Query 015574
Match_columns 404
No_of_seqs 119 out of 140
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 14:59:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghg_A Fibrinogen alpha chain; 82.9 3.2 0.00011 43.7 8.3 73 289-379 119-191 (562)
2 3twe_A Alpha4H; unknown functi 69.2 5.8 0.0002 25.9 3.6 22 253-274 3-24 (27)
3 3f4m_A Tumor necrosis factor, 66.2 74 0.0025 28.6 11.6 121 234-379 28-158 (161)
4 1deq_A Fibrinogen (alpha chain 48.7 50 0.0017 33.6 8.1 12 366-377 181-192 (390)
5 1z23_A CRK-associated substrat 33.5 2.1E+02 0.0072 25.8 9.0 30 138-167 20-61 (163)
6 4g63_A Cytosolic IMP-GMP speci 30.5 42 0.0014 34.6 4.4 20 288-307 376-395 (470)
7 3mp7_B Preprotein translocase 26.6 18 0.00062 27.7 0.7 32 190-221 2-33 (61)
8 3oja_B Anopheles plasmodium-re 24.6 3.7E+02 0.013 26.7 9.9 19 289-307 546-564 (597)
9 1t3j_A Mitofusin 1; coiled coi 22.4 2E+02 0.0069 23.9 6.3 52 207-258 23-78 (96)
10 3hd7_B Syntaxin-1A; membrane p 21.2 3.2E+02 0.011 22.3 7.3 34 238-271 18-59 (109)
11 1fyj_A Multifunctional aminoac 21.2 1.2E+02 0.0041 22.3 4.3 47 290-340 3-49 (57)
12 3pdy_A Plectin; cytoskeleton, 21.1 4.1E+02 0.014 23.1 9.0 39 232-270 90-128 (210)
13 4aj5_A SKA1, spindle and kinet 21.1 1.8E+02 0.006 24.2 5.6 15 253-267 39-53 (91)
14 3mq9_A Bone marrow stromal ant 20.3 4.8E+02 0.016 25.3 9.6 19 289-307 452-470 (471)
No 1
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.86 E-value=3.2 Score=43.71 Aligned_cols=73 Identities=11% Similarity=0.268 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCccchhhhhhHHH
Q 015574 289 FAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYAN 368 (404)
Q Consensus 289 l~~lqqklk~QRq~VK~LKk~SLWsrt~D~VVekLvriV~tI~~rI~~VFG~~~~~~p~~~s~~~~~tLG~AgLALHYAN 368 (404)
+..|+.+|..|-+.++.|+. ++++.+.++-|.=--|-..|..-.|++-...... --| =-|-|
T Consensus 119 IqyLKekVdnQlsnIrvLQs------nLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~------vd~------~sY~~ 180 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQK------NVRAQLVDMKRLEVDIDIKIRSCRGSCSRALARE------VDL------KDYED 180 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCC------CCH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhccccccchheee------cch------HHHHH
Confidence 45556666666655555553 3555555555544445566666667665322111 111 14889
Q ss_pred HHHHHHHHHhh
Q 015574 369 IILQIDSLVSL 379 (404)
Q Consensus 369 iI~qIe~lvsr 379 (404)
+=-|++.+++.
T Consensus 181 ~QKQLeQv~a~ 191 (562)
T 3ghg_A 181 QQKQLEQVIAK 191 (562)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhhc
Confidence 99999988854
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=69.19 E-value=5.8 Score=25.91 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=16.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHh
Q 015574 253 TAELYNELQILDRFEQDCQHKR 274 (404)
Q Consensus 253 TA~LY~ELeaL~elEq~~Rrk~ 274 (404)
.-+||.|||-|.+-=..+|+|+
T Consensus 3 adelykeledlqerlrklrkkl 24 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999998877666666655
No 3
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=66.24 E-value=74 Score=28.64 Aligned_cols=121 Identities=20% Similarity=0.238 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHhhhcC-C--CCCCCCCccHHHHHHHHHHHHHHH
Q 015574 234 QLKQEAELLMEQLMTLVQHTAELYN-------ELQILDRFEQDCQHKRQEED-N--PVGSQKGESFAILRAELKSQRKQV 303 (404)
Q Consensus 234 ~~~k~ae~kmkKmerlV~~TA~LY~-------ELeaL~elEq~~Rrk~~~~e-~--~~~~~~g~~l~~lqqklk~QRq~V 303 (404)
+.+++|++.++.+.+.|--..-||+ ||..+++|-+.++.- .-.- + -.... =....|.+-+..-|+..
T Consensus 28 ~nkkeA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr~k~~~~-amt~iSF~eVdfT--fD~~~L~~~L~ec~~lL 104 (161)
T 3f4m_A 28 HSRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQG-AMTALSFGEVDFT--FEAAVLAGLLTECRDVL 104 (161)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-HHHHHHHTSTTSC--CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHHHHHHHH-HHHHhhhhccCcc--ccHHHHHHHHHHHHHHH
Confidence 4589999999999999999999996 555555544444221 1000 0 00000 12344555555555555
Q ss_pred HhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCccchhhhhhHHHHHHHHHHHHhh
Q 015574 304 KILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYANIILQIDSLVSL 379 (404)
Q Consensus 304 K~LKk~SLWsrt~D~VVekLvriV~tI~~rI~~VFG~~~~~~p~~~s~~~~~tLG~AgLALHYANiI~qIe~lvsr 379 (404)
..|=+.-|=-+| +.||.+||+-..... +-.+.= ++ -...|--+|+.-+++|+-+
T Consensus 105 ~~lv~~HLT~KS---------------~~Ri~~vF~~f~~~e-fL~~lf-----~~-~~~~~L~kI~~~Lnklld~ 158 (161)
T 3f4m_A 105 LELVEHHLTPKS---------------HGRIRHVFDHFSDPG-LLTALY-----GP-DFTQHLGKICDGLRKLLDE 158 (161)
T ss_dssp HHHHTTTSCHHH---------------HHHHHHHHHHHTCHH-HHHHHT-----SG-GGHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhCCcch---------------HHHHHHHHHHhCCHH-HHHHHh-----Cc-HHHHHHHHHHHHHHHHHhC
Confidence 444443333332 578888887443211 110000 01 3456677888888887643
No 4
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=48.74 E-value=50 Score=33.61 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 015574 366 YANIILQIDSLV 377 (404)
Q Consensus 366 YANiI~qIe~lv 377 (404)
|-|+--|++.+.
T Consensus 181 ye~qqKQL~qv~ 192 (390)
T 1deq_A 181 YKNQQKQLEQVI 192 (390)
T ss_pred HHHHHHHHHhhh
Confidence 445555555554
No 5
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=33.54 E-value=2.1e+02 Score=25.77 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHh---------hhcC---ChHHHHHhhhhc
Q 015574 138 AFEVANTIVKGSNL---------MLSI---SESSVRQLKEVV 167 (404)
Q Consensus 138 AFEVAntMSKl~~L---------~~SL---Sd~eI~rLR~ev 167 (404)
==||+..++++..+ ||+. -+.+|..+|.-+
T Consensus 20 Q~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~ 61 (163)
T 1z23_A 20 QQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAV 61 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHH
Confidence 34677777777776 8877 345565555543
No 6
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=30.54 E-value=42 Score=34.57 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=10.1
Q ss_pred cHHHHHHHHHHHHHHHHhhh
Q 015574 288 SFAILRAELKSQRKQVKILR 307 (404)
Q Consensus 288 ~l~~lqqklk~QRq~VK~LK 307 (404)
.+.+++.++..-+++++.++
T Consensus 376 e~~~l~~~~~~~~~~~~~~~ 395 (470)
T 4g63_A 376 EIHDLQLQISTVDLQISRLL 395 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544443
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=26.57 E-value=18 Score=27.69 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=23.7
Q ss_pred HHHHHHHhHHHHhHhhhhccCCCccccchhHH
Q 015574 190 ADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRY 221 (404)
Q Consensus 190 AEk~eeL~~~A~sVaRLG~rC~DP~lh~fdr~ 221 (404)
++..|.++.|.++..|+=++|+-|.|..|-.+
T Consensus 2 ~~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~i 33 (61)
T 3mp7_B 2 AELQERIRHFWKESRRAFLVTKKPNWATYKRA 33 (61)
T ss_dssp ------CTTHHHHHTHHHHHSCCCCTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 56778899999999999999999999988754
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.57 E-value=3.7e+02 Score=26.74 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 015574 289 FAILRAELKSQRKQVKILR 307 (404)
Q Consensus 289 l~~lqqklk~QRq~VK~LK 307 (404)
...+++++..++++++.||
T Consensus 546 ~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 546 NIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhhHHHHHH
Confidence 4455555566666665555
No 9
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.37 E-value=2e+02 Score=23.88 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=19.5
Q ss_pred hccCCCccccchhHHHHHHhhcccch-hhhH---HHHHHHHHHHHHHHHHHHHHHH
Q 015574 207 GNRSKDPQWHNLGRYFEKISRELIPQ-KQLK---QEAELLMEQLMTLVQHTAELYN 258 (404)
Q Consensus 207 G~rC~DP~lh~fdr~F~~l~~~~~~~-~~~~---k~ae~kmkKmerlV~~TA~LY~ 258 (404)
+..|..--=+.++-+|++|......- ..++ +.+++++.+||........|.+
T Consensus 23 SsncshQVQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRn 78 (96)
T 1t3j_A 23 SANCSHQVQQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRN 78 (96)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 56788777788888898887653211 1121 3444444444444444444433
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=21.23 E-value=3.2e+02 Score=22.30 Aligned_cols=34 Identities=12% Similarity=0.359 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHH
Q 015574 238 EAELLMEQLMTLVQHTAELYNEL--------QILDRFEQDCQ 271 (404)
Q Consensus 238 ~ae~kmkKmerlV~~TA~LY~EL--------eaL~elEq~~R 271 (404)
+=+..++++|+=+.--.++|.+| +.+|+.|...-
T Consensus 18 eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~ 59 (109)
T 3hd7_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVE 59 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44556777777777778888888 44556665553
No 11
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=21.19 E-value=1.2e+02 Score=22.29 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhhCC
Q 015574 290 AILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGS 340 (404)
Q Consensus 290 ~~lqqklk~QRq~VK~LKk~SLWsrt~D~VVekLvriV~tI~~rI~~VFG~ 340 (404)
..++..|..|.-.||.||...-=....|..|..| ..+-......-|.
T Consensus 3 ~~l~~~v~~qG~~VR~LKa~kA~k~~i~~aV~~L----l~lK~~~~~~tg~ 49 (57)
T 1fyj_A 3 LVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQL----LSLKAEYKEKTGQ 49 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH----HHHHHHHHHHhCC
Confidence 5788999999999999998655455566667665 3445555555664
No 12
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=21.14 E-value=4.1e+02 Score=23.10 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015574 232 QKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDC 270 (404)
Q Consensus 232 ~~~~~k~ae~kmkKmerlV~~TA~LY~ELeaL~elEq~~ 270 (404)
|..+.+-++.+.++|+.|-+.-.+...++.=|++-|+.+
T Consensus 90 ~~~L~~~a~~R~~~L~~L~~f~~~~~~~~~Wl~eke~~~ 128 (210)
T 3pdy_A 90 YAKLLNSSKARLRSLESLHSFVAAATKELMWLNEKEEEE 128 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777888888865444444444455555555544
No 13
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=21.06 E-value=1.8e+02 Score=24.16 Aligned_cols=15 Identities=7% Similarity=0.286 Sum_probs=10.2
Q ss_pred HHHHHHHHhHHHHHH
Q 015574 253 TAELYNELQILDRFE 267 (404)
Q Consensus 253 TA~LY~ELeaL~elE 267 (404)
-..+++|+.++.+|=
T Consensus 39 L~Kig~Ei~~l~eLL 53 (91)
T 4aj5_A 39 LNKIGDEIIVINELL 53 (91)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356788887776653
No 14
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.27 E-value=4.8e+02 Score=25.30 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 015574 289 FAILRAELKSQRKQVKILR 307 (404)
Q Consensus 289 l~~lqqklk~QRq~VK~LK 307 (404)
+..+.++|+-+|-+|+++|
T Consensus 452 ~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 452 ITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4556666667777777665
Done!