BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015577
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AHQ|A Chain A, Hyperactive Human Ero1
Length = 465
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 186/381 (48%), Gaps = 66/381 (17%)
Query: 71 TGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDC 130
+G ++DC CD ET+D N L P LQ+L+ + +FRY+K L CPFW D C RDC
Sbjct: 37 SGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVNLKRPCPFWNDISQCGRRDC 96
Query: 131 SVXXXXXXXXXXXXXXXXHILP--SDDLMCQEGKPE--ATVDRTLD---KRAFRGWIETD 183
+V + +++L+ + + E VD +L ++A W + D
Sbjct: 97 AVKPAQSDEVPDGIKSASYKYSEEANNLIEEAEQAERLGAVDESLSEETQKAVLQWTKHD 156
Query: 184 NPWTNDDETDN---GEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIV-PAN 239
+ N E D+ E YV+LLLNPERYTGY GP A +IW+ +Y ENC K I P N
Sbjct: 157 DSSDNFAEADDIQSPEAEYVDLLLNPERYTGYKGPDAWKIWNVIYEENCFKPQTIKRPLN 216
Query: 240 P----------------------------------QTRPNPPAKTRPL--------RWGK 257
P N R L +WG
Sbjct: 217 PLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINVHLSARYLLQETWLEKKWGH 276
Query: 258 NP---ELMYDRVLRYQD---RVRNLYFTFLFVLRAVTKATDYLEQAEYD--TGNHEDDLK 309
N + +D +L + R++NLYF +L LRA++K + E+ ++ TGN D +
Sbjct: 277 NITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKVLPFFERPDFQLFTGNKIQDEE 336
Query: 310 TVSLMKQLLYNPKLQAACPLPFDEAKLWQG--QSGPELKQQIQEQFRNISALMDCVGCEK 367
L+ ++L+ K + PL FDE + G + +LK+ + FRNIS +MDCVGC K
Sbjct: 337 NKMLLLEILHEIK---SFPLHFDENSFFAGDKKEAHKLKEDFRLHFRNISRIMDCVGCFK 393
Query: 368 CRLWGKLQVLGLGTALKILFS 388
CRLWGKLQ GLGTALKILFS
Sbjct: 394 CRLWGKLQTQGLGTALKILFS 414
>pdb|3AHR|A Chain A, Inactive Human Ero1
Length = 465
Score = 194 bits (492), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 132/381 (34%), Positives = 186/381 (48%), Gaps = 66/381 (17%)
Query: 71 TGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDC 130
+G ++DC CD ET+D N L P LQ+L+ + +FRY+K L CPFW D C RD
Sbjct: 37 SGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVNLKRPCPFWNDISQCGRRDA 96
Query: 131 SVXXXXXXXXXXXXXXXXHILP--SDDLM--CQEGKPEATVDRTLD---KRAFRGWIETD 183
+V + +++L+ C++ + VD +L ++A W + D
Sbjct: 97 AVKPAQSDEVPDGIKSASYKYSEEANNLIEECEQAERLGAVDESLSEETQKAVLQWTKHD 156
Query: 184 NPWTNDDETDN---GEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIV-PAN 239
+ N E D+ E YV+LLLNPERYTGY GP A +IW+ +Y ENC K I P N
Sbjct: 157 DSSDNFAEADDIQSPEAEYVDLLLNPERYTGYKGPDAWKIWNVIYEENCFKPQTIKRPLN 216
Query: 240 P----------------------------------QTRPNPPAKTRPL--------RWGK 257
P N R L +WG
Sbjct: 217 PLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINVHLSARYLLQETWLEKKWGH 276
Query: 258 NP---ELMYDRVLRYQD---RVRNLYFTFLFVLRAVTKATDYLEQAEYD--TGNHEDDLK 309
N + +D +L + R++NLYF +L LRA++K + E+ ++ TGN D +
Sbjct: 277 NITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKVLPFFERPDFQLFTGNKIQDEE 336
Query: 310 TVSLMKQLLYNPKLQAACPLPFDEAKLWQG--QSGPELKQQIQEQFRNISALMDCVGCEK 367
L+ ++L+ K + PL FDE + G + +LK+ + FRNIS +MDCVGC K
Sbjct: 337 NKMLLLEILHEIK---SFPLHFDENSFFAGDKKEAHKLKEDFRLHFRNISRIMDCVGCFK 393
Query: 368 CRLWGKLQVLGLGTALKILFS 388
CRLWGKLQ GLGTALKILFS
Sbjct: 394 CRLWGKLQTQGLGTALKILFS 414
>pdb|3NVJ|A Chain A, Crystal Structure Of The C143aC166A MUTANT OF ERO1P
Length = 393
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 155/344 (45%), Gaps = 58/344 (16%)
Query: 81 YETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFW-PDDGMCRLRDCSVXXXX--- 136
+ ++++N E + L L+ + FF+YF+ L+ C FW +DG+C R CSV
Sbjct: 18 FNELNAIN-ENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWD 76
Query: 137 --------XXXXXXXXXXXXHILPSDD------LMCQEGKPEATVDRTLDKRAFRGWIET 182
SDD +CQ K ++ T++
Sbjct: 77 TLPEYWQPEILGSFNNDTMKEADDSDDEAKFLDQLCQTSKKPVDIEDTIN---------- 126
Query: 183 DNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENC------------P 230
+ + ++ + ++L NPER+TGY G A +IW +Y +NC
Sbjct: 127 ---YADVNDFNGKNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGETGESLAKD 183
Query: 231 KWMAIVPANPQTRPNPPAK----TRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRA 286
+ +V + +K T+ +W N +L R+ + DRV N+YF + V +A
Sbjct: 184 AFYRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKA 243
Query: 287 VTKATDYLEQAEY-DTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPEL 345
+ K YL + + D N E K +++ QL + K+ F+E ++ L
Sbjct: 244 LWKIQPYLPEFSFCDLVNKEIKNKMDNVISQL--DTKI-------FNEDLVFANDLSLTL 294
Query: 346 KQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSV 389
K + + +F+N++ +MDCV C++CRLWGK+Q G TALKILF +
Sbjct: 295 KDEFRSRFKNVTKIMDCVQCDRCRLWGKIQTTGYATALKILFEI 338
>pdb|1RQ1|A Chain A, Structure Of Ero1p, Source Of Disulfide Bonds For
Oxidative Protein Folding In The Cell
Length = 386
Score = 127 bits (320), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 155/344 (45%), Gaps = 58/344 (16%)
Query: 81 YETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFW-PDDGMCRLRDCSVXXXX--- 136
+ ++++N E + L L+ + FF+YF+ L+ C FW +DG+C R CSV
Sbjct: 18 FNELNAIN-ENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWD 76
Query: 137 --------XXXXXXXXXXXXHILPSDD------LMCQEGKPEATVDRTLDKRAFRGWIET 182
SDD +CQ K ++ T++
Sbjct: 77 TLPEYWQPEILGSFNNDTMKEADDSDDECKFLDQLCQTSKKPVDIEDTIN---------- 126
Query: 183 DNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENC------------P 230
+ + ++ + ++L NPER+TGY G A +IW +Y +NC
Sbjct: 127 ---YCDVNDFNGKNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGETGESLAKD 183
Query: 231 KWMAIVPANPQTRPNPPAK----TRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRA 286
+ +V + +K T+ +W N +L R+ + DRV N+YF + V +A
Sbjct: 184 AFYRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKA 243
Query: 287 VTKATDYLEQAEY-DTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPEL 345
+ K YL + + D N E K +++ QL + K+ F+E ++ L
Sbjct: 244 LWKIQPYLPEFSFCDLVNKEIKNKMDNVISQL--DTKI-------FNEDLVFANDLSLTL 294
Query: 346 KQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSV 389
K + + +F+N++ +MDCV C++CRLWGK+Q G TALKILF +
Sbjct: 295 KDEFRSRFKNVTKIMDCVQCDRCRLWGKIQTTGYATALKILFEI 338
>pdb|3M31|A Chain A, Structure Of The C150aC295A MUTANT OF S. CEREVISIAE ERO1P
Length = 388
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 155/331 (46%), Gaps = 32/331 (9%)
Query: 81 YETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFW-PDDGMCRLRDCSVXXXXXXX 139
+ ++++N E + L L+ + FF+YF+ L+ C FW +DG+C R CSV
Sbjct: 17 FNELNAIN-ENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWD 75
Query: 140 XXXXXXXXXHILPSDDLMCQEGKPEATVDRTLDKRAFRGW----IETDNPWTNDDETDNG 195
+ ++ +E + LD+ A IE + + ++ +
Sbjct: 76 TLPEYWQPEILGSFNNDTMKEADDSDDECKFLDQLAQTSKKPVDIEDTINYCDVNDFNGK 135
Query: 196 EMTYVNLLLNPERYTGYTGPSARRIWDAVYTENC------------PKWMAIVPANPQTR 243
++L NPER+TGY G A +IW +Y +NC + +V +
Sbjct: 136 NAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGETGESLAKDAFYRLVSGFHASI 195
Query: 244 PNPPAK----TRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEY 299
+K T+ +W N +L R+ + DRV N+YF + V +A+ K YL + +
Sbjct: 196 GTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKALWKIQPYLPEFSF 255
Query: 300 -DTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISA 358
D N E K +++ QL + K+ F+E ++ LK + + +F+N++
Sbjct: 256 ADLVNKEIKNKMDNVISQL--DTKI-------FNEDLVFANDLSLTLKDEFRSRFKNVTK 306
Query: 359 LMDCVGCEKCRLWGKLQVLGLGTALKILFSV 389
+MDCV C++CRLWGK+Q G TALKILF +
Sbjct: 307 IMDCVQCDRCRLWGKIQTTGYATALKILFEI 337
>pdb|1RP4|A Chain A, Structure Of Ero1p, Source Of Disulfide Bonds For
Oxidative Protein Folding In The Cell
Length = 389
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 154/344 (44%), Gaps = 58/344 (16%)
Query: 81 YETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFW-PDDGMCRLRDCSVXXXX--- 136
+ ++++N E + L L+ + FF+YF+ L+ C FW +DG+C R CSV
Sbjct: 18 FNELNAIN-ENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWD 76
Query: 137 --------XXXXXXXXXXXXHILPSDD------LMCQEGKPEATVDRTLDKRAFRGWIET 182
SDD +CQ K ++ T++
Sbjct: 77 TLPEYWQPEILGSFNNDTXKEADDSDDECKFLDQLCQTSKKPVDIEDTIN---------- 126
Query: 183 DNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENC------------P 230
+ + ++ + ++L NPER+TGY G A +IW +Y +NC
Sbjct: 127 ---YCDVNDFNGKNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGETGESLAKD 183
Query: 231 KWMAIVPANPQTRPNPPAK----TRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRA 286
+ +V + +K T+ +W N +L R+ + DRV N YF + V +A
Sbjct: 184 AFYRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFXARIGNFPDRVTNXYFNYAVVAKA 243
Query: 287 VTKATDYLEQAEY-DTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPEL 345
+ K YL + + D N E K +++ QL + K+ F+E ++ L
Sbjct: 244 LWKIQPYLPEFSFCDLVNKEIKNKXDNVISQL--DTKI-------FNEDLVFANDLSLTL 294
Query: 346 KQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSV 389
K + + +F+N++ + DCV C++CRLWGK+Q G TALKILF +
Sbjct: 295 KDEFRSRFKNVTKIXDCVQCDRCRLWGKIQTTGYATALKILFEI 338
>pdb|2IGL|A Chain A, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
pdb|2IGL|B Chain B, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
pdb|2IGL|C Chain C, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
pdb|2IGL|D Chain D, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
Length = 118
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 149 HILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDD 190
+IL L Q GKP A V TL+K+A GW++ + T+ D
Sbjct: 8 NILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKD 49
>pdb|2G2N|A Chain A, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2N|B Chain B, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2N|C Chain C, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2N|D Chain D, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2P|A Chain A, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
pdb|2G2P|B Chain B, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
pdb|2G2P|C Chain C, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
pdb|2G2P|D Chain D, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
Length = 114
Score = 32.7 bits (73), Expect = 0.42, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 149 HILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDD 190
+IL L Q GKP A V TL+K+A GW++ + T+ D
Sbjct: 4 NILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKD 45
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 275 NLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEA 334
NLYF + +LRA + + +++ H DL +S++ + P A +PF
Sbjct: 17 NLYFQSMRLLRASGRTPEAVQKLLEQGLRHSQDLAFLSMLNDIAAVP----ATAMPFRGY 72
Query: 335 KLWQGQ-SGPELKQ 347
+ G+ GPE++Q
Sbjct: 73 AVLGGERGGPEVQQ 86
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 275 NLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEA 334
NLYF + +LRA + + +++ H DL +S++ + P A +PF
Sbjct: 17 NLYFQSMRLLRASGRTPEAVQKLLEQGLRHSQDLAFLSMLNDIAAVP----ATAMPFRGY 72
Query: 335 KLWQGQ-SGPELKQ 347
+ G+ GPE++Q
Sbjct: 73 AVLGGERGGPEVQQ 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,771,206
Number of Sequences: 62578
Number of extensions: 470377
Number of successful extensions: 894
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 22
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)