Query 015577
Match_columns 404
No_of_seqs 142 out of 256
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:36:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2608 Endoplasmic reticulum 100.0 7E-125 1E-129 946.4 19.5 357 21-398 2-391 (469)
2 PF04137 ERO1: Endoplasmic Ret 100.0 1E-113 2E-118 862.4 5.3 298 90-392 1-328 (357)
3 COG5061 ERO1 Oxidoreductin, en 100.0 6.7E-84 1.5E-88 634.6 7.6 308 71-401 22-350 (425)
4 PF13746 Fer4_18: 4Fe-4S diclu 45.7 11 0.00024 29.8 1.2 27 344-370 34-60 (69)
5 PF15264 TSSC4: Tumour suppres 43.2 9.5 0.00021 33.7 0.5 15 201-215 56-70 (115)
6 PRK13159 cytochrome c-type bio 31.7 21 0.00046 33.1 0.9 57 20-76 6-62 (155)
7 PF13677 MotB_plug: Membrane M 29.5 43 0.00092 25.8 2.1 11 18-28 12-22 (58)
8 PF13124 DUF3963: Protein of u 27.7 1E+02 0.0022 22.3 3.5 29 261-289 7-36 (40)
9 PF14812 PBP1_TM: Transmembran 27.4 4.8 0.0001 33.6 -3.7 15 19-33 63-77 (81)
10 PRK12785 fliL flagellar basal 25.6 31 0.00067 31.8 0.8 35 1-35 1-37 (166)
11 PRK08455 fliL flagellar basal 21.7 46 0.001 31.3 1.2 7 1-7 1-7 (182)
12 PF13260 DUF4051: Protein of u 20.2 71 0.0015 24.5 1.7 10 22-31 4-13 (54)
No 1
>KOG2608 consensus Endoplasmic reticulum membrane-associated oxidoreductin involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-125 Score=946.36 Aligned_cols=357 Identities=47% Similarity=0.852 Sum_probs=323.8
Q ss_pred CcchHHHHHHHHHHHHHhhhhcccCcccccccCCCCcccccCCCCCCccccccccCcccchhhhhhhhhchhhHHhHHhh
Q 015577 21 GRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLV 100 (404)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~G~vdDc~c~~etId~~N~~~i~P~L~~L~ 100 (404)
+||.|+++++.+|.+++ .++ +.|.. ..|||+ +.|+|+||+||++|||++|+++|+|+|+.|+
T Consensus 2 ~r~~~l~~l~~~~~l~~-~v~-------~~~~~--~~~~ck--------~~~~i~dc~c~~~~i~nln~~~i~~~lq~l~ 63 (469)
T KOG2608|consen 2 KRAIALLGLIAAVKLIS-VVN-------TQFAS--SICFCK--------VDGIIEDCTCDYETIDNLNNEVIYPLLQKLL 63 (469)
T ss_pred chhHHHHHHHHHHHHHH-hcc-------ccccc--cceeee--------cccccccCCCCHHHHHHhhccccchHHHHHh
Confidence 34788777777777776 344 22222 689999 7899999999999999999999999999999
Q ss_pred cCCCceEEeccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCC-ccccccCCC-CcccccccchhhhcC
Q 015577 101 TTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPSD-DLMCQEGKP-EATVDRTLDKRAFRG 178 (404)
Q Consensus 101 ~t~fFRyfKVNL~~~CPFW~dd~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~~-~~~c~~~~~-~~~vd~~l~~~~~~~ 178 (404)
++||||||||||+++||||+||++|++++|+|++|+|+|||++||++.++++++ -..|+.+++ ++++|++++.++|..
T Consensus 64 ksdffryYkvnL~~~CpFW~Dd~~C~~r~C~V~~c~e~evPe~~k~~~~~~~~~~~~e~~~~~~~~~~~d~tl~dr~f~~ 143 (469)
T KOG2608|consen 64 KSDFFRYYKVNLYRDCPFWPDDGMCLNRACSVEPCPEDEVPEGWKKSLGKYEPELCSECEDADSELGAKDRTLSDRAFLL 143 (469)
T ss_pred cccchhheeccccCCCCCCCchhhhhhcCCccccCcccccchhhhhhhhccChhhhhhhhhccccccchhcccccccccc
Confidence 999999999999999999999999999999999999999999999966666552 234655666 889999999999999
Q ss_pred ccccCCC-CCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCCC------C------CCCC-------
Q 015577 179 WIETDNP-WTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWM------A------IVPA------- 238 (404)
Q Consensus 179 w~~~d~~-~~~~De~~~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~~------~------~~~C------- 238 (404)
|..+|+. ||..|+.++++++||||++||||||||+|++|+|||++||+||||++. . .++|
T Consensus 144 w~~~d~~~~C~~dd~~s~~~~YVdLl~NPERyTGY~G~sa~rIW~sIYeeNCf~~~~~~~~~~~~~~~l~g~clEkrvfY 223 (469)
T KOG2608|consen 144 WDKHDDLSFCEVDDEESPEMVYVDLLLNPERYTGYKGPSAARIWRSIYEENCFKPDPLFDPNSIPYNWLEGLCLEKRVFY 223 (469)
T ss_pred ccccCCccceeecCCCCCCcEEEehhcChhhhcCCCCCCHHHHHHHHHHhhCCCCCcccCCcccccchhccccHHHHHHH
Confidence 9999998 999888889999999999999999999999999999999999999875 1 3677
Q ss_pred -----CCCCccCCCCCC----CCC-CCCCChHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCccccH
Q 015577 239 -----NPQTRPNPPAKT----RPL-RWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDL 308 (404)
Q Consensus 239 -----LHsSIsiHl~~~----~~~-~wgpNl~~F~~Rv~~~PeRl~NLYF~Y~~vLRAl~Ka~p~L~~~~f~tGn~~eD~ 308 (404)
|||||+||||++ .++ .||||+++|+.||++||+||+||||+|++|+|||.||+|||++.+|+||+..||+
T Consensus 224 rLISGlHsSIstHl~~~~y~~~e~~~WgpNl~~f~~Rf~~~P~Rl~NlYF~Yll~lrAl~Ki~pyl~~~~~~tgn~~eD~ 303 (469)
T KOG2608|consen 224 RLISGLHSSISTHLCSFYYLLEETKRWGPNLDLFRARFGNGPDRLRNLYFTYLLVLRALGKIAPYLEELDFYTGNVEEDA 303 (469)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCcccccCcCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhcchhhhhhhcccccccch
Confidence 999999999995 444 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccCCCCcccccccCCC-CcchHHHHHHHHHhhhhhhhcCccCCccccchhhhhHHHHHHHHHhc
Q 015577 309 KTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQ-SGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILF 387 (404)
Q Consensus 309 ~t~~ll~~Ll~~~~l~~sc~~~FDE~~lF~~~-~~~~LK~efr~~FrNISrIMDCVgCeKCRLWGKLQt~GLgTALKILF 387 (404)
+|+.+|.++++.++ +||.||||+.||+|+ .++.||++||+|||||||||||||||||||||||||+||||||||||
T Consensus 304 e~k~~i~~il~~i~---~~p~hFdE~~~f~gd~~a~~lKe~fr~hFrnISrIMDCVgCdKCRLWGKlQt~GlGTALKILf 380 (469)
T KOG2608|consen 304 ETKSLLSDILSQIK---AFPKHFDEAELFAGDSEAPALKEEFRKHFRNISRIMDCVGCDKCRLWGKLQTQGLGTALKILF 380 (469)
T ss_pred HHHHHHHHHHHHHh---hCccccchHhhhcccccchhHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHHHHh
Confidence 99999999998765 699999999999999 78999999999999999999999999999999999999999999999
Q ss_pred CcCcCCCcCcc
Q 015577 388 SVEGQNHAAQS 398 (404)
Q Consensus 388 s~~~~~~~~~~ 398 (404)
+..+.++..+.
T Consensus 381 s~~~~~~~~~~ 391 (469)
T KOG2608|consen 381 SVKDADPFTQL 391 (469)
T ss_pred ccCCCCccccc
Confidence 99986654443
No 2
>PF04137 ERO1: Endoplasmic Reticulum Oxidoreductin 1 (ERO1); InterPro: IPR007266 Members of this family are required for the formation of disulphide bonds in the endoplasmic reticulum [, ].; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0050660 flavin adenine dinucleotide binding, 0006467 protein thiol-disulfide exchange, 0055114 oxidation-reduction process, 0005789 endoplasmic reticulum membrane; PDB: 1RQ1_A 1RP4_A 3NVJ_A 3M31_A 3AHR_A 3AHQ_A.
Probab=100.00 E-value=1e-113 Score=862.40 Aligned_cols=298 Identities=50% Similarity=0.940 Sum_probs=239.8
Q ss_pred chhhHHhHHhhcCCCceEEeccCCCCCCCCCCC-CCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccc
Q 015577 90 EVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDD-GMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMCQEGKPEATVD 168 (404)
Q Consensus 90 ~~i~P~L~~L~~t~fFRyfKVNL~~~CPFW~dd-~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~~~~~c~~~~~~~~vd 168 (404)
++|+|+|++|+++||||||||||+++||||+++ ++|++++|+|++|+|+|||++||++.+.+.. ..|.+++.+..+|
T Consensus 1 ~~i~p~L~~L~~~~fFRyfKVnL~k~CpFW~dd~~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~--~~~~~~~~~~~~~ 78 (357)
T PF04137_consen 1 EKIFPLLQELVKTDFFRYFKVNLYKECPFWNDDNGMCGSRDCAVCECDENEIPEPWRAELSKLEQ--SACEEGSDQSDLD 78 (357)
T ss_dssp -CCHHHHHHHHCSCCCCEEEEESS---SSSSSSSS---TCCCBB-TSS-GGS-GGGSHHHTS--T--TTECCHCCHCSGG
T ss_pred CcchHHHHHHhCCCCeEEEeecCCCCCCCCCCcccCcCCCCCeeeeCChhhcCcccccccccccc--hhcccccchhhhc
Confidence 358999999999999999999999999999998 9999999999999999999999982233332 2355555455678
Q ss_pred cccch-hhhcCccccCCC--CCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCCCCC-------CCC
Q 015577 169 RTLDK-RAFRGWIETDNP--WTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAI-------VPA 238 (404)
Q Consensus 169 ~~l~~-~~~~~w~~~d~~--~~~~De~~~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~~~~-------~~C 238 (404)
.+++. .++..|..+++. ||..|++++++++||||++||||||||+|++|+|||++||+||||++... ++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~c~~dd~~~~~~~YVDL~~NPEryTGY~G~~a~rIW~aIY~ENCF~~~~~~~~~~~~~~C 158 (357)
T PF04137_consen 79 RTLSDCDEFCDWEDHDDSDDFCDLDDESSEEGVYVDLLLNPERYTGYSGPSAHRIWRAIYEENCFKPGSPSDPSWLDGMC 158 (357)
T ss_dssp GSBGHCCCCCCCHHCCCCTTHHHHTT---TTEEEEECCCS------B-CHHHHHHHHHHHCT--B-TTSTTH-------H
T ss_pred CChhhhhhhcCccccccchhcCcCCCCCCCCceEEEcccCcccccCCCCCcHHHHHHHHHHHhCCCCCcccccccccccc
Confidence 88776 678889988652 77766666689999999999999999999999999999999999986542 578
Q ss_pred ------------CCCCccCCCCCC----CC---CCCCCChHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhhhhhhhhcc
Q 015577 239 ------------NPQTRPNPPAKT----RP---LRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEY 299 (404)
Q Consensus 239 ------------LHsSIsiHl~~~----~~---~~wgpNl~~F~~Rv~~~PeRl~NLYF~Y~~vLRAl~Ka~p~L~~~~f 299 (404)
||||||||||++ .+ |.||||+++|++|||+|||||+||||+|++|||||+||+|||.+++|
T Consensus 159 ~EkrvfyrlISGlHaSIs~Hl~~~y~~~~~~~~g~w~pNl~~F~~R~g~~peRl~NLYF~y~~~lRAl~K~~p~l~~~~~ 238 (357)
T PF04137_consen 159 LEKRVFYRLISGLHASISIHLCAEYLNDETWEEGEWGPNLEEFMERFGEHPERLKNLYFTYLLVLRALAKAAPYLENYDF 238 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTEEECCTSS-EEEE--HHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCCHHHHHST--
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCcccccccCCCCHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999998 44 68999999999999999999999999999999999999999999999
Q ss_pred CCCCccccHHHHHHHHHHhcCccccccCCCCcccccccCCCCcchHHHHHHHHHhhhhhhhcCccCCccccchhhhhHHH
Q 015577 300 DTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGL 379 (404)
Q Consensus 300 ~tGn~~eD~~t~~ll~~Ll~~~~l~~sc~~~FDE~~lF~~~~~~~LK~efr~~FrNISrIMDCVgCeKCRLWGKLQt~GL 379 (404)
+||+..+|.+|+++|.+||+... +||.+|||+.||+++.+.+||+|||+|||||||||||||||||||||||||+||
T Consensus 239 ~tg~~~eD~~t~~~l~~ll~~~~---~~~~~FdE~~lf~~~~~~~Lk~efr~~F~NIs~IMDCV~CeKCRLWGKlQt~Gl 315 (357)
T PF04137_consen 239 NTGNDEEDAETKKLLRDLLSSAK---SCPSHFDESSLFKGDEAPQLKEEFRQHFRNISRIMDCVGCEKCRLWGKLQTQGL 315 (357)
T ss_dssp -STTSCCCCCHHHHHHHHHHCCH---HS-CCCGTTTTTTTTCHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHH
T ss_pred ccCChhhhHHHHHHHHHHHHHHH---hccccCCHHHHcCCccHHHHHHHHHHHHhhHHHHHcCcccchheeechhhhhhH
Confidence 99999999999999999998754 699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcCcC
Q 015577 380 GTALKILFSVEGQ 392 (404)
Q Consensus 380 gTALKILFs~~~~ 392 (404)
||||||||++++.
T Consensus 316 gTALKILf~~~~~ 328 (357)
T PF04137_consen 316 GTALKILFSDDEK 328 (357)
T ss_dssp HHHHHHHCHHHCH
T ss_pred HHHHHHHhCccCc
Confidence 9999999999983
No 3
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=6.7e-84 Score=634.60 Aligned_cols=308 Identities=30% Similarity=0.530 Sum_probs=258.1
Q ss_pred cccccC-cccchhhhhhhhhchhhHHhHHhhcCCCceEEeccCC-CCCCCCCC-CCCCCCCCcccccCCCCC-CCCCCCC
Q 015577 71 TGMVED-CCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLW-CDCPFWPD-DGMCRLRDCSVCECPENE-FPEPFKK 146 (404)
Q Consensus 71 ~G~vdD-c~c~~etId~~N~~~i~P~L~~L~~t~fFRyfKVNL~-~~CPFW~d-d~~C~~~~C~V~~c~e~e-iP~~wr~ 146 (404)
.-+|.+ |+.++. |.++|.+ +.|+|-.|+++|||+||++||+ +.||||+| ++||.+++|+|..-+|.+ ||+.|+.
T Consensus 22 ~~iis~t~nss~~-i~~~ns~-vr~ll~~LteSDym~yyrlnLy~k~c~lw~ddn~mc~s~acnv~v~~e~d~vpkvW~~ 99 (425)
T COG5061 22 EIIISQTDNSSTG-IYQMNSK-VRSLLPVLTESDYMFYYRLNLYAKACTLWPDDNDMCVSKACNVTVRSEEDLVPKVWKD 99 (425)
T ss_pred hheecCcccccch-HHHHhhh-hhhhhHHhhhhhHHHHHHHHHHHhhCCCCCCcchhhhcccccceehhhhhcchhHhHh
Confidence 344544 777888 9999886 7999999999999999999999 79999998 689999999999999877 9999986
Q ss_pred CCCCCCCCccccccCCCCcccccccchhhhcCcccc-CCCCCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHHHHH
Q 015577 147 PFHILPSDDLMCQEGKPEATVDRTLDKRAFRGWIET-DNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVY 225 (404)
Q Consensus 147 ~~~~~~~~~~~c~~~~~~~~vd~~l~~~~~~~w~~~-d~~~~~~De~~~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY 225 (404)
.-+...+ .| + .+| .+..|..- |..+|..|+....+.+||||+.||||||||+|++|.+||+.||
T Consensus 100 kls~f~p---h~---k---kld------q~c~~sk~pd~~YCyvdn~~~~n~vyisLlenpErfTGY~g~hSa~IWr~Iy 164 (425)
T COG5061 100 KLSLFKP---HS---K---KLD------QFCSESKCPDLSYCYVDNKSIFNDVYISLLENPERFTGYKGNHSAEIWRKIY 164 (425)
T ss_pred hhhhhcc---ch---h---hhh------hccccccCCchhheeecCCCCCCcEEeehhcChHhhcCCCCCchHHHHHHHH
Confidence 3221111 01 0 111 11122222 2347777766778899999999999999999999999999999
Q ss_pred hhcCCCCCCC------------CCCCCCCccCCCCCC----CCCCCCCChHHHHHHHhhhcchhhhHHHHHHHHHHHHHH
Q 015577 226 TENCPKWMAI------------VPANPQTRPNPPAKT----RPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTK 289 (404)
Q Consensus 226 ~ENCF~~~~~------------~~CLHsSIsiHl~~~----~~~~wgpNl~~F~~Rv~~~PeRl~NLYF~Y~~vLRAl~K 289 (404)
+.|||..... .++|||||+||+|.+ .+|.|+||+++|++|||++||||.|+||+|++|.+||.|
T Consensus 165 eqncfd~~~~p~~Lekr~FyRlvSGfhaSIsTHls~~yln~~~g~w~pNldlfrarvgnfpdRieN~yfnYalv~~al~k 244 (425)
T COG5061 165 EQNCFDTLLPPTLLEKRMFYRLVSGFHASISTHLSSFYLNVFFGTWLPNLDLFRARVGNFPDRIENFYFNYALVRSALGK 244 (425)
T ss_pred HhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcceecCCHHHHHHHhccchHHHHHHHHHHHHHHHHHHh
Confidence 9999975432 346999999999998 689999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCccccHHHHHHHHHHhcCccccccCCCCcccccccCCCCcchHHHHHHHHHhhhhhhhcCccCCccc
Q 015577 290 ATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCR 369 (404)
Q Consensus 290 a~p~L~~~~f~tGn~~eD~~t~~ll~~Ll~~~~l~~sc~~~FDE~~lF~~~~~~~LK~efr~~FrNISrIMDCVgCeKCR 369 (404)
+.++|....|+..+. .+++..|.+|++... +-|..|||..+|+++.+.+||++||+|||+||||||||||||||
T Consensus 245 I~~~l~sftFC~~~~---~e~~~k~~~lis~i~---~~~k~fne~q~fa~e~Si~lKd~frehfr~vs~lMdcVgCekCr 318 (425)
T COG5061 245 IDVDLSSFTFCPTDK---DELSGKLSSLISAIR---AQGKTFNEIQPFALEKSIQLKDRFREHFRDVSRLMDCVGCEKCR 318 (425)
T ss_pred hccCCcccccCCccH---HHHHhHHHHHHHHHH---hccccccceecccCccchhhhHHHHHHHHhHHHHHHhcCchhhh
Confidence 999999999985432 288889999997532 45789999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHhcCcCcCCCcCcccce
Q 015577 370 LWGKLQVLGLGTALKILFSVEGQNHAAQSVSC 401 (404)
Q Consensus 370 LWGKLQt~GLgTALKILFs~~~~~~~~~~~~~ 401 (404)
|||||||+|+||||||||+.+-+..-.+++++
T Consensus 319 LWGkIQttGygtALKilfe~et~~fdLr~~E~ 350 (425)
T COG5061 319 LWGKIQTTGYGTALKILFESETQLFDLRSLER 350 (425)
T ss_pred eeeeeeecchHHHHHHHhccccccccccHHHH
Confidence 99999999999999999999654444555444
No 4
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=45.66 E-value=11 Score=29.77 Aligned_cols=27 Identities=26% Similarity=0.658 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhhhhhhhcCccCCcccc
Q 015577 344 ELKQQIQEQFRNISALMDCVGCEKCRL 370 (404)
Q Consensus 344 ~LK~efr~~FrNISrIMDCVgCeKCRL 370 (404)
.++..+..+++.-.-..+||||.+|--
T Consensus 34 r~r~r~~~k~~~~~~~~~CVgCgrCv~ 60 (69)
T PF13746_consen 34 RMRYRFMHKLRDRYGEGDCVGCGRCVR 60 (69)
T ss_pred ccchhhhhhhhhhcCCccCCCcChHhh
Confidence 344445555665567889999999964
No 5
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=43.22 E-value=9.5 Score=33.67 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=11.8
Q ss_pred eCCCCCCCCCCCCCC
Q 015577 201 NLLLNPERYTGYTGP 215 (404)
Q Consensus 201 DLl~NPERyTGY~G~ 215 (404)
|-++||||||-|+=.
T Consensus 56 DYv~nP~KwTkYSL~ 70 (115)
T PF15264_consen 56 DYVRNPEKWTKYSLD 70 (115)
T ss_pred CCcCCcccceeeecC
Confidence 444999999999743
No 6
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=31.70 E-value=21 Score=33.10 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=32.1
Q ss_pred CCcchHHHHHHHHHHHHHhhhhcccCcccccccCCCCcccccCCCCCCccccccccC
Q 015577 20 LGRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVED 76 (404)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~G~vdD 76 (404)
.+|..+++++++++.+|++.+.+.-..+++.|-.+++-=-=.....+..++-|.|..
T Consensus 6 ~rRl~~v~~~~~~~~~a~~Lv~~al~~n~~yF~tpsEv~~~~~~~~~~~RlGG~V~~ 62 (155)
T PRK13159 6 KQRLWLVIGVLTAAALAVTLIVLALQRNMSYLFTPSQVRAGAAAGYQQFRLGGMVKA 62 (155)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCceEEECHHHHhcCCcccCCeEEEccEEec
Confidence 346666666666666666555555556667776555411111122355667777764
No 7
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=29.53 E-value=43 Score=25.81 Aligned_cols=11 Identities=27% Similarity=0.093 Sum_probs=6.0
Q ss_pred hcCCcchHHHH
Q 015577 18 KGLGRGLWSVW 28 (404)
Q Consensus 18 ~~~~~~~~~~~ 28 (404)
.+.++|.-+-+
T Consensus 12 ~~~~~Wlvtya 22 (58)
T PF13677_consen 12 EGSPRWLVTYA 22 (58)
T ss_pred CCCccHHHHHH
Confidence 44667854444
No 8
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=27.71 E-value=1e+02 Score=22.30 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=22.0
Q ss_pred HHHHH-HhhhcchhhhHHHHHHHHHHHHHH
Q 015577 261 LMYDR-VLRYQDRVRNLYFTFLFVLRAVTK 289 (404)
Q Consensus 261 ~F~~R-v~~~PeRl~NLYF~Y~~vLRAl~K 289 (404)
-|.+| +..-..+|+|+-|.++++.-+|..
T Consensus 7 ~fieryfddiqkwirnit~cfal~vv~lvs 36 (40)
T PF13124_consen 7 AFIERYFDDIQKWIRNITFCFALLVVVLVS 36 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777 345678999999999888766653
No 9
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=27.42 E-value=4.8 Score=33.58 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=3.9
Q ss_pred cCCcchHHHHHHHHH
Q 015577 19 GLGRGLWSVWAVIVV 33 (404)
Q Consensus 19 ~~~~~~~~~~~~~~~ 33 (404)
..++|.|+++.|++|
T Consensus 63 kKrrwlwLlikl~lV 77 (81)
T PF14812_consen 63 KKRRWLWLLIKLFLV 77 (81)
T ss_dssp --------TTTTHCC
T ss_pred ccchhHHHHHHHHHH
Confidence 345577776655544
No 10
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=25.62 E-value=31 Score=31.82 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=16.5
Q ss_pred Cccccchhh-hhhHHHHh-hcCCcchHHHHHHHHHHH
Q 015577 1 MAKDKKRND-QISKEKKK-KGLGRGLWSVWAVIVVLF 35 (404)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 35 (404)
||++++.|. +-.++.++ ++.++..+++++++++++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~kkk~liii~~~~lll~ 37 (166)
T PRK12785 1 MAKKPKKAPAAEGGEGAAPPKKKKKLIIIAAAAVLLL 37 (166)
T ss_pred CCCCcccccccccccccCCCCCcceEeeHHHHHHHHH
Confidence 777666654 43333332 334555444443333333
No 11
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.68 E-value=46 Score=31.29 Aligned_cols=7 Identities=29% Similarity=0.648 Sum_probs=4.1
Q ss_pred Cccccch
Q 015577 1 MAKDKKR 7 (404)
Q Consensus 1 ~~~~~~~ 7 (404)
||++.+.
T Consensus 1 MAee~~~ 7 (182)
T PRK08455 1 MAEEQEN 7 (182)
T ss_pred CCcchhh
Confidence 7765544
No 12
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=20.21 E-value=71 Score=24.48 Aligned_cols=10 Identities=30% Similarity=0.531 Sum_probs=6.3
Q ss_pred cchHHHHHHH
Q 015577 22 RGLWSVWAVI 31 (404)
Q Consensus 22 ~~~~~~~~~~ 31 (404)
-|+|+|..+|
T Consensus 4 awywivli~l 13 (54)
T PF13260_consen 4 AWYWIVLIVL 13 (54)
T ss_pred HHHHHHHHHH
Confidence 3889765433
Done!