Query 015578
Match_columns 404
No_of_seqs 127 out of 361
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 9.3E-86 2E-90 636.2 20.5 240 139-402 1-258 (258)
2 PF00651 BTB: BTB/POZ domain; 98.1 4.1E-06 8.9E-11 69.3 5.7 77 2-86 32-110 (111)
3 smart00225 BTB Broad-Complex, 98.0 1.1E-05 2.4E-10 62.5 5.2 65 2-68 20-84 (90)
4 PHA03098 kelch-like protein; P 97.9 9.7E-05 2.1E-09 78.0 12.6 139 2-179 32-179 (534)
5 KOG4441 Proteins containing BT 97.5 0.0014 3.1E-08 70.9 13.8 198 2-269 57-260 (571)
6 PHA02713 hypothetical protein; 97.1 0.0018 3.9E-08 69.7 9.5 85 2-98 47-132 (557)
7 PHA02790 Kelch-like protein; P 96.7 0.0025 5.4E-08 67.3 6.0 80 2-88 42-121 (480)
8 PF11822 DUF3342: Domain of un 92.6 0.099 2.2E-06 52.9 3.3 78 2-86 25-103 (317)
9 smart00512 Skp1 Found in Skp1 81.5 2.4 5.2E-05 35.5 4.4 62 3-66 23-104 (104)
10 KOG2075 Topoisomerase TOP1-int 81.1 11 0.00023 40.5 9.8 151 4-180 142-294 (521)
11 KOG4682 Uncharacterized conser 59.7 14 0.00029 39.1 4.7 107 1-122 88-199 (488)
12 PF14363 AAA_assoc: Domain ass 57.6 5.6 0.00012 33.3 1.3 35 362-398 29-63 (98)
13 PF10929 DUF2811: Protein of u 45.4 14 0.0003 28.6 1.6 19 373-391 9-27 (57)
14 COG3510 CmcI Cephalosporin hyd 42.8 11 0.00023 36.3 0.8 31 359-389 182-214 (237)
15 KOG2016 NEDD8-activating compl 40.6 38 0.00082 36.3 4.4 62 329-390 343-434 (523)
16 KOG0783 Uncharacterized conser 39.3 37 0.0008 39.1 4.3 85 2-114 579-675 (1267)
17 PF03931 Skp1_POZ: Skp1 family 37.8 27 0.00059 26.6 2.2 37 3-43 22-58 (62)
18 PF11123 DNA_Packaging_2: DNA 35.3 20 0.00043 29.3 1.1 16 372-387 31-46 (82)
19 KOG4350 Uncharacterized conser 34.5 53 0.0011 35.0 4.3 81 2-87 65-145 (620)
20 PHA00617 ribbon-helix-helix do 32.1 62 0.0013 26.6 3.5 36 147-182 44-80 (80)
21 PF01402 RHH_1: Ribbon-helix-h 30.6 62 0.0013 21.9 2.9 34 148-181 5-39 (39)
22 PF13764 E3_UbLigase_R4: E3 ub 28.1 34 0.00073 39.2 1.8 51 338-388 277-335 (802)
23 PRK15322 invasion protein OrgB 23.7 1.1E+02 0.0025 29.4 4.2 85 302-386 89-204 (210)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=9.3e-86 Score=636.19 Aligned_cols=240 Identities=43% Similarity=0.784 Sum_probs=214.0
Q ss_pred CCceehhccccChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcCCCccccccccCCCCCCcchhhhhhccCCcccccc
Q 015578 139 QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVG 218 (404)
Q Consensus 139 ~dWW~eDl~~L~~~~f~rvi~am~~~g~~~~~i~~~L~~Ya~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (404)
+|||||||+.|++++|+|||.+|+++||++++||++|+|||+||||++.+...+.... ..+....
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~---------------~~~~~~~ 65 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSS---------------AESSTSS 65 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccccc---------------ccccchh
Confidence 5899999999999999999999999999999999999999999999985541111100 1223446
Q ss_pred hhhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhcccccccccccCCCCccccccCCCC
Q 015578 219 QKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPE 298 (404)
Q Consensus 219 ~~~qr~llE~iv~LLP~e~~~vsc~fLf~LLr~a~~l~as~~cr~~LE~rIg~qLd~AtldDLLIPs~~~~~~~~~~~~~ 298 (404)
..+||.+||+||+|||.+++++||+|||+|||+|+++++|++||.+||+|||+|||||||||||||+.+...+
T Consensus 66 ~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~------- 138 (258)
T PF03000_consen 66 ENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGED------- 138 (258)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCccc-------
Confidence 7899999999999999999999999999999999999999999999999999999999999999999323332
Q ss_pred CCcccchHHHHHHHHHHHhhHhhh----------hhhhcchhhhhhhhchhhHhhhhcCCCCCChhHHHHHHHhcCCccc
Q 015578 299 HNTMHNIDVVQRIMDYFLMHEQQQ----------QQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENAR 368 (404)
Q Consensus 299 ~~tlyDVd~V~riv~~Fl~~~~~~----------~~~~~~~~~~~VakLvD~YLaEiA~D~nL~~~kF~~Lae~lP~~aR 368 (404)
|+||||+|+|||++||.+.+.. ...++.+++.+||||||+||+|||+|+||+|+||++|||++|++||
T Consensus 139 --t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR 216 (258)
T PF03000_consen 139 --TLYDVDLVQRIVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSAR 216 (258)
T ss_pred --chhhHHHHHHHHHHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhh
Confidence 9999999999999999984321 1125678999999999999999999999999999999999999999
Q ss_pred ccCcchhHHHHHhhhcCCCCchHHH--------hhccccccc
Q 015578 369 TCHDGLYRAIDTYLKPIVFFSHIRH--------YLNMIGEGC 402 (404)
Q Consensus 369 ~~hDgLYRAIDiYLKaHp~ls~~e~--------~~~~~~~~~ 402 (404)
++|||||||||||||+||++|++|| |+|||+|+|
T Consensus 217 ~~hD~LYrAID~YLk~Hp~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 217 PSHDGLYRAIDIYLKAHPGLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred hccchHHHHHHHHHHHcccCCHHHHHHHHhhCCcccCCcccC
Confidence 9999999999999999999999987 689999999
No 2
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.14 E-value=4.1e-06 Score=69.26 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=67.0
Q ss_pred ccccHHHHHHcCCC-CCCCccceeecCCCCChHHHHHHHHhhcCCccccC-CcchHHHHhhHhhhcCccccCCCchHHHH
Q 015578 2 SKCGYIARLELQPS-ISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFN-PNNIAPLRCASEFLDMSEEYEDGNLISKT 79 (404)
Q Consensus 2 SkSg~l~rl~~~~~-~~~~~~~i~l~dfPGGaeaFEl~akFCYg~~i~lt-~~NVa~LrCAAeyLeMtE~~~~~NLi~~t 79 (404)
++|.||++++.... ......+|.+++++ +++|+...+|||+..+.++ ..|+..+...|.+++|.+ |...+
T Consensus 32 ~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~------L~~~~ 103 (111)
T PF00651_consen 32 ARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPE------LKKAC 103 (111)
T ss_dssp HHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHH------HHHHH
T ss_pred ccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHH------HHHHH
Confidence 57999999999883 22233478888887 8899999999999999998 999999999999999995 99999
Q ss_pred HHHhhhh
Q 015578 80 EAFLTLV 86 (404)
Q Consensus 80 E~fL~~~ 86 (404)
+.||.+.
T Consensus 104 ~~~l~~~ 110 (111)
T PF00651_consen 104 EKFLQES 110 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999863
No 3
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.98 E-value=1.1e-05 Score=62.53 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=54.9
Q ss_pred ccccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCcc
Q 015578 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSE 68 (404)
Q Consensus 2 SkSg~l~rl~~~~~~~~~~~~i~l~dfPGGaeaFEl~akFCYg~~i~lt~~NVa~LrCAAeyLeMtE 68 (404)
++|.+|++++...........+.+.| ..+++|+.+-+|+|+.++.+++.|+..+..+|+|++|.+
T Consensus 20 ~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~ 84 (90)
T smart00225 20 ACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPG 84 (90)
T ss_pred hcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHH
Confidence 46899999998654332345677766 579999999999999999999999999999999999985
No 4
>PHA03098 kelch-like protein; Provisional
Probab=97.93 E-value=9.7e-05 Score=78.05 Aligned_cols=139 Identities=14% Similarity=0.271 Sum_probs=99.8
Q ss_pred ccccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCccccCCCchHHHHHH
Q 015578 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (404)
Q Consensus 2 SkSg~l~rl~~~~~~~~~~~~i~l~dfPGGaeaFEl~akFCYg~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~~tE~ 81 (404)
++|.||+.++...-. ..+|+|.+ -+++|+.+.+|-|.++++|+..||..|--||.+|+|.+ |....+.
T Consensus 32 a~S~yF~~mf~~~~~---~~~i~l~~---~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~------l~~~C~~ 99 (534)
T PHA03098 32 SSSEYFKKMFKNNFK---ENEINLNI---DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF------LINLCIN 99 (534)
T ss_pred hhhHHHHHHHhCCCC---CceEEecC---CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence 579999999976432 35777776 78999999999999999999999999999999999996 9999999
Q ss_pred HhhhhhccChHHHHHHHhhhccccchhhhh---hhHHHHHHHHHHHh---ccCCCcccccccCCCceehhccccChHHHH
Q 015578 82 FLTLVILSSWKETITVLKSCKNLSPWAENL---QIVRRCCDSIAWKA---SRENSTTEDIANRQGWWFDDVATLGIDHFM 155 (404)
Q Consensus 82 fL~~~v~~sW~dsi~vL~sc~~llp~AE~l---~Iv~RCidsla~ka---~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~ 155 (404)
||.+.+ +-.. |-.++..|+.. .+.+.|.+-|+... +.+ +|...|+.+..+
T Consensus 100 ~l~~~l--~~~n-------c~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~---------------~~f~~l~~~~l~ 155 (534)
T PHA03098 100 YIIKII--DDNN-------CIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYND---------------PDFIYLSKNELI 155 (534)
T ss_pred HHHHhC--CHhH-------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcC---------------chhhcCCHHHHH
Confidence 998865 2333 44444455544 36667777666442 211 456678877666
Q ss_pred HHHHHHHhcC--C-CchhHHHHHHHHH
Q 015578 156 RIITTIKVKG--T-KPEIIGKCIMHYA 179 (404)
Q Consensus 156 rvi~am~~~g--~-~~~~i~~~L~~Ya 179 (404)
.++. +.. + +++.+-++++.++
T Consensus 156 ~ll~---~~~L~v~~E~~v~~av~~W~ 179 (534)
T PHA03098 156 KILS---DDKLNVSSEDVVLEIIIKWL 179 (534)
T ss_pred HHhc---CCCcCcCCHHHHHHHHHHHH
Confidence 5543 333 2 4556777765444
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.51 E-value=0.0014 Score=70.86 Aligned_cols=198 Identities=16% Similarity=0.275 Sum_probs=132.8
Q ss_pred ccccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCccccCCCchHHHHHH
Q 015578 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (404)
Q Consensus 2 SkSg~l~rl~~~~~~~~~~~~i~l~dfPGGaeaFEl~akFCYg~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~~tE~ 81 (404)
+-|.||+-+++..-.+....+|+|.+ .-++++++...|+|.++++|+-.||-.|--||.+|+|++ +..-.-.
T Consensus 57 a~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~ 128 (571)
T KOG4441|consen 57 ACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPE------VVDACCE 128 (571)
T ss_pred hccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHH------HHHHHHH
Confidence 45789999988533333556899998 789999999999999999999999999999999999996 8888999
Q ss_pred HhhhhhccChHHHH-----HHHhhhccccchhhhhhhHHHHHHHHHHHhccCCCcccccccCCCceehhccccChHHHHH
Q 015578 82 FLTLVILSSWKETI-----TVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMR 156 (404)
Q Consensus 82 fL~~~v~~sW~dsi-----~vL~sc~~llp~AE~l~Iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~r 156 (404)
||.+.+.. ..++ +-+.+|..|...|.+ .|.+...+-.. -||-..||.+.+..
T Consensus 129 fL~~~l~~--~Nclgi~~~a~~~~~~~L~~~a~~-~i~~~F~~v~~--------------------~eefl~L~~~~l~~ 185 (571)
T KOG4441|consen 129 FLESQLDP--SNCLGIRRFAELHSCTELLEVADE-YILQHFAEVSK--------------------TEEFLLLSLEELIG 185 (571)
T ss_pred HHHhcCCH--HHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHHhc--------------------cHHhhCCCHHHHHh
Confidence 99986533 3333 334567777766654 24444333211 15555688777666
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhcCCCccccccccCCCCCCcchhhhhhccCCcccccchhhhHHHHHHHHHhCCCC
Q 015578 157 IITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQ 236 (404)
Q Consensus 157 vi~am~~~g~~~~~i~~~L~~Ya~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llE~iv~LLP~e 236 (404)
+|..-.-.--+++-+..+ +-+|+..= . ..+++ .+..+|..-
T Consensus 186 ll~~d~l~v~~E~~vf~a----~~~Wv~~d----------------------------~---~~R~~----~~~~ll~~v 226 (571)
T KOG4441|consen 186 LLSSDDLNVDSEEEVFEA----AMRWVKHD----------------------------F---EEREE----HLPALLEAV 226 (571)
T ss_pred hccccCCCcCCHHHHHHH----HHHHHhcC----------------------------H---hhHHH----HHHHHHHhc
Confidence 665533333345555555 45555530 0 00111 122233222
Q ss_pred C-CcccHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 015578 237 D-EGVSCKFFLQMLKMAMVYNASPALISELEKRV 269 (404)
Q Consensus 237 ~-~~vsc~fLf~LLr~a~~l~as~~cr~~LE~rI 269 (404)
+ .-++-.||.......-.+.....||..|..=.
T Consensus 227 r~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 227 RLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred CccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 2 34778899999999989999999999886544
No 6
>PHA02713 hypothetical protein; Provisional
Probab=97.14 E-value=0.0018 Score=69.71 Aligned_cols=85 Identities=16% Similarity=0.316 Sum_probs=68.0
Q ss_pred ccccHHHHHHcCCCC-CCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCccccCCCchHHHHH
Q 015578 2 SKCGYIARLELQPSI-SNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE 80 (404)
Q Consensus 2 SkSg~l~rl~~~~~~-~~~~~~i~l~dfPGGaeaFEl~akFCYg~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~~tE 80 (404)
+.|.||+.|++..-. +....+|+|.++ .+++|+.+.+|.|.++ ||+.||-.|-.||.+|+|++ |....+
T Consensus 47 a~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~------l~~~C~ 116 (557)
T PHA02713 47 AGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDD------LVTDCE 116 (557)
T ss_pred hcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHH------HHHHHH
Confidence 579999999975322 112457889876 5899999999999886 79999999999999999996 999999
Q ss_pred HHhhhhhccChHHHHHHH
Q 015578 81 AFLTLVILSSWKETITVL 98 (404)
Q Consensus 81 ~fL~~~v~~sW~dsi~vL 98 (404)
.||.+.+- -..++.++
T Consensus 117 ~~l~~~l~--~~NCl~i~ 132 (557)
T PHA02713 117 SYIKDYTN--HDTCIYMY 132 (557)
T ss_pred HHHHhhCC--ccchHHHH
Confidence 99988653 23455554
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=96.72 E-value=0.0025 Score=67.29 Aligned_cols=80 Identities=13% Similarity=0.042 Sum_probs=65.1
Q ss_pred ccccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCccccCCCchHHHHHH
Q 015578 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (404)
Q Consensus 2 SkSg~l~rl~~~~~~~~~~~~i~l~dfPGGaeaFEl~akFCYg~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~~tE~ 81 (404)
+-|.|||-|++..-.+ ...+|.+..+.-.+++++.+.+|-|.++++||..||-.+-.||.||+|++ ++.....
T Consensus 42 a~S~YFraMF~~~~~E-s~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~------v~~~C~~ 114 (480)
T PHA02790 42 KLSPYFRTHLRQKYTK-NKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEF------IIYTCIN 114 (480)
T ss_pred hcCHHHHHHhcCCccc-cccceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHH------HHHHHHH
Confidence 4688999998753222 12345554234468999999999999999999999999999999999996 9999999
Q ss_pred Hhhhhhc
Q 015578 82 FLTLVIL 88 (404)
Q Consensus 82 fL~~~v~ 88 (404)
||.+.+-
T Consensus 115 fL~~~l~ 121 (480)
T PHA02790 115 FILRDFR 121 (480)
T ss_pred HHHhhCC
Confidence 9998763
No 8
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=92.64 E-value=0.099 Score=52.87 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=57.8
Q ss_pred ccccHHHHHHcCC-CCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCccccCCCchHHHHH
Q 015578 2 SKCGYIARLELQP-SISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE 80 (404)
Q Consensus 2 SkSg~l~rl~~~~-~~~~~~~~i~l~dfPGGaeaFEl~akFCYg~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~~tE 80 (404)
++=+||+..+... +++....+|.|. +-=.-..||.-.++++|..+.|||.||+++---++||+|++ |++.+=
T Consensus 25 ~~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~------Lve~cl 97 (317)
T PF11822_consen 25 SEMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES------LVEECL 97 (317)
T ss_pred HhhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH------HHHHHH
Confidence 3447888888541 111122233332 22345799999999999999999999999999999999996 999998
Q ss_pred HHhhhh
Q 015578 81 AFLTLV 86 (404)
Q Consensus 81 ~fL~~~ 86 (404)
.|....
T Consensus 98 ~y~~~~ 103 (317)
T PF11822_consen 98 QYCHDH 103 (317)
T ss_pred HHHHHh
Confidence 888653
No 9
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=81.45 E-value=2.4 Score=35.47 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=40.2
Q ss_pred cccHHHHHHcCCCCCC-CccceeecCCCCChHHHHHHHHhhcCCc---c----------------ccCCcchHHHHhhHh
Q 015578 3 KCGYIARLELQPSISN-LGYDLKLENFPGGSETFEIILKFCYGLP---I----------------AFNPNNIAPLRCASE 62 (404)
Q Consensus 3 kSg~l~rl~~~~~~~~-~~~~i~l~dfPGGaeaFEl~akFCYg~~---i----------------~lt~~NVa~LrCAAe 62 (404)
.|+.++.++.+..... +...|.|++++ +.+++.+.+||+--+ . .+...++--|-.||.
T Consensus 23 ~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAn 100 (104)
T smart00512 23 QSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAAN 100 (104)
T ss_pred HHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHH
Confidence 5888999998654321 12356666665 689999999998321 0 034445666677777
Q ss_pred hhcC
Q 015578 63 FLDM 66 (404)
Q Consensus 63 yLeM 66 (404)
||++
T Consensus 101 yL~I 104 (104)
T smart00512 101 YLDI 104 (104)
T ss_pred hhCC
Confidence 7764
No 10
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=81.08 E-value=11 Score=40.51 Aligned_cols=151 Identities=12% Similarity=0.177 Sum_probs=100.0
Q ss_pred ccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCccccCCCchHHHHHHHh
Q 015578 4 CGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFL 83 (404)
Q Consensus 4 Sg~l~rl~~~~~~~~~~~~i~l~dfPGGaeaFEl~akFCYg~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~~tE~fL 83 (404)
|..+-+|+.+........+|+++|+ -|.+|+---||=|+..+.+.|.||-.+.-+|.= |-.+-|...+-+||
T Consensus 142 S~VFdaMf~g~~a~~~s~ei~lpdv--epaaFl~~L~flYsdev~~~~dtvi~tl~~AkK------Y~VpaLer~CVkfl 213 (521)
T KOG2075|consen 142 SDVFDAMFYGGLAEDASLEIRLPDV--EPAAFLAFLRFLYSDEVKLAADTVITTLYAAKK------YLVPALERQCVKFL 213 (521)
T ss_pred hHHHHHHhccCcccccCceeecCCc--ChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHH------hhhHHHHHHHHHHH
Confidence 3445666665443323668999976 589999999999999999999999887766642 23345888888899
Q ss_pred hhhhccChHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHh--ccCCCcccccccCCCceehhccccChHHHHHHHHHH
Q 015578 84 TLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKA--SRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTI 161 (404)
Q Consensus 84 ~~~v~~sW~dsi~vL~sc~~llp~AE~l~Iv~RCidsla~ka--~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvi~am 161 (404)
+...+. .....-|-+|-.++ ++=.+.++|++.|.-.. |.++ -||-|.-.+ .++|..|++-
T Consensus 214 r~~l~~--~naf~~L~q~A~lf---~ep~Li~~c~e~id~~~~~al~~-----------EGf~did~~-~dt~~evl~r- 275 (521)
T KOG2075|consen 214 RKNLMA--DNAFLELFQRAKLF---DEPSLISICLEVIDKSFEDALTP-----------EGFCDIDST-RDTYEEVLRR- 275 (521)
T ss_pred HHhcCC--hHHHHHHHHHHHhh---cCHHHHHHHHHHhhhHHHhhhCc-----------cceeehhhH-HHHHHHHHhh-
Confidence 886643 44455555554443 44459999999986332 3222 377777666 7888776643
Q ss_pred HhcCCCchhHHHHHHHHHH
Q 015578 162 KVKGTKPEIIGKCIMHYAK 180 (404)
Q Consensus 162 ~~~g~~~~~i~~~L~~Ya~ 180 (404)
....++.-.+-+++..|++
T Consensus 276 ~~l~~~e~~lfeA~lkw~~ 294 (521)
T KOG2075|consen 276 DTLEAREFRLFEAALKWAE 294 (521)
T ss_pred cccchhHHHHHHHHHhhcc
Confidence 1123455556677555554
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=59.75 E-value=14 Score=39.10 Aligned_cols=107 Identities=9% Similarity=0.105 Sum_probs=77.4
Q ss_pred CccccHHHHHHcCCCCCC--CccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCccccCCCchHHH
Q 015578 1 MSKCGYIARLELQPSISN--LGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISK 78 (404)
Q Consensus 1 ~SkSg~l~rl~~~~~~~~--~~~~i~l~dfPGGaeaFEl~akFCYg~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~~ 78 (404)
++.|+||+-++..+-... +-..++|.|=.....+|..|-+==|-..|+|.++-|+.+-.||.+|... .|++|
T Consensus 88 L~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqld------gl~qr 161 (488)
T KOG4682|consen 88 LFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLD------GLIQR 161 (488)
T ss_pred eeccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHh------hHHHH
Confidence 457899999998754332 3346788999999999999999999999999999999999999999987 47777
Q ss_pred HHHHhhhhhccChHHHHHHHhhhccccchhhhhhhH---HHHHHHHH
Q 015578 79 TEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIV---RRCCDSIA 122 (404)
Q Consensus 79 tE~fL~~~v~~sW~dsi~vL~sc~~llp~AE~l~Iv---~RCidsla 122 (404)
.-.-+-+.+- -+ +.-.+...+..+|++ ..|.+-+-
T Consensus 162 C~evMie~ls--pk-------ta~~yYea~ckYgle~vk~kc~ewl~ 199 (488)
T KOG4682|consen 162 CGEVMIETLS--PK-------TACGYYEAACKYGLESVKKKCLEWLL 199 (488)
T ss_pred HHHHHHHhcC--hh-------hhhHhhhhhhhhhhHHHHHHHHHHHH
Confidence 6554433221 11 112244566666654 45666554
No 12
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=57.63 E-value=5.6 Score=33.31 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=26.9
Q ss_pred hcCCcccccCcchhHHHHHhhhcCCCCchHHHhhccc
Q 015578 362 SLPENARTCHDGLYRAIDTYLKPIVFFSHIRHYLNMI 398 (404)
Q Consensus 362 ~lP~~aR~~hDgLYRAIDiYLKaHp~ls~~e~~~~~~ 398 (404)
.+|++.......+|+|+..||.+.+..+. +++|++
T Consensus 29 ~I~E~~g~~~N~ly~a~~~YL~s~~s~~a--~rL~~~ 63 (98)
T PF14363_consen 29 VIPEFDGLSRNELYDAAQAYLSSKISPSA--RRLKAS 63 (98)
T ss_pred EEEeCCCccccHHHHHHHHHHhhccCccc--ceeeec
Confidence 35666667788999999999999986654 666654
No 13
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=45.36 E-value=14 Score=28.56 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=16.6
Q ss_pred chhHHHHHhhhcCCCCchH
Q 015578 373 GLYRAIDTYLKPIVFFSHI 391 (404)
Q Consensus 373 gLYRAIDiYLKaHp~ls~~ 391 (404)
-||.|+..||+.||+-.+-
T Consensus 9 ~L~~~m~~fie~hP~WDQ~ 27 (57)
T PF10929_consen 9 DLHQAMKDFIETHPNWDQY 27 (57)
T ss_pred HHHHHHHHHHHcCCCchHH
Confidence 5899999999999998653
No 14
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=42.76 E-value=11 Score=36.34 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=24.4
Q ss_pred HHHhcC--CcccccCcchhHHHHHhhhcCCCCc
Q 015578 359 LAESLP--ENARTCHDGLYRAIDTYLKPIVFFS 389 (404)
Q Consensus 359 Lae~lP--~~aR~~hDgLYRAIDiYLKaHp~ls 389 (404)
+.+-+| +..+..-+|=|+||.-|||.||+=-
T Consensus 182 ~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~y 214 (237)
T COG3510 182 NVNDLPGPVLPWRFGGGPYEAVEAYLREFPQDY 214 (237)
T ss_pred cccCCCCcccchhcCCChHHHHHHHHHhCCccc
Confidence 345577 5666679999999999999999543
No 15
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=40.63 E-value=38 Score=36.33 Aligned_cols=62 Identities=23% Similarity=0.394 Sum_probs=45.8
Q ss_pred hhhhhhhhchhhHhhhhcCCC----------------CCChhHHHHHHHhcCCccc-----ccCcc---------hhHHH
Q 015578 329 MGKTNVSKILDNYLAEVARDP----------------NLSITKFQVLAESLPENAR-----TCHDG---------LYRAI 378 (404)
Q Consensus 329 ~~~~~VakLvD~YLaEiA~D~----------------nL~~~kF~~Lae~lP~~aR-----~~hDg---------LYRAI 378 (404)
....+|.+.+-.+|.+++.+| +|++-.|..++|-.-++.+ .+.|. +|||+
T Consensus 343 ~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRav 422 (523)
T KOG2016|consen 343 ADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAV 422 (523)
T ss_pred hhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHH
Confidence 345689999999999999884 4666666677776655544 33444 79999
Q ss_pred HHhhhcCCCCch
Q 015578 379 DTYLKPIVFFSH 390 (404)
Q Consensus 379 DiYLKaHp~ls~ 390 (404)
|.||+.|-....
T Consensus 423 drfl~~~gk~pG 434 (523)
T KOG2016|consen 423 DRFLKEKGKYPG 434 (523)
T ss_pred HHHHHHhcCCCC
Confidence 999999866543
No 16
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=39.31 E-value=37 Score=39.09 Aligned_cols=85 Identities=22% Similarity=0.432 Sum_probs=54.8
Q ss_pred ccccHHHHHHcCCCCC------------CCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCccc
Q 015578 2 SKCGYIARLELQPSIS------------NLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEE 69 (404)
Q Consensus 2 SkSg~l~rl~~~~~~~------------~~~~~i~l~dfPGGaeaFEl~akFCYg~~i~lt~~NVa~LrCAAeyLeMtE~ 69 (404)
+||..||+|+.+-.++ ...++|.+.|+| |.+||+.-.|-|..+ -+.|+--=-.-|.+- +
T Consensus 579 ~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt-~~~P~heDdidci~f------s 649 (1267)
T KOG0783|consen 579 ARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDT-LLSPWHEDDIDCIRF------S 649 (1267)
T ss_pred eccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccc-ccCCccccchhhhhc------c
Confidence 6889999998864432 135677889998 479999999999755 456622212222221 1
Q ss_pred cCCCchHHHHHHHhhhhhccChHHHHHHHhhhccccchhhhhhhH
Q 015578 70 YEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIV 114 (404)
Q Consensus 70 ~~~~NLi~~tE~fL~~~v~~sW~dsi~vL~sc~~llp~AE~l~Iv 114 (404)
..+.|+.+|| |+|+.|.|.+|...++
T Consensus 650 ~~k~N~~qrt-------------------rtCeMl~~~lekf~l~ 675 (1267)
T KOG0783|consen 650 PLKENLSQRT-------------------RTCEMLANLLEKFHLA 675 (1267)
T ss_pred ccccChhhcc-------------------cHHHHHHHHHhhhhHH
Confidence 2355776643 5677777777776654
No 17
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=37.77 E-value=27 Score=26.56 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=28.1
Q ss_pred cccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHhhc
Q 015578 3 KCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCY 43 (404)
Q Consensus 3 kSg~l~rl~~~~~~~~~~~~i~l~dfPGGaeaFEl~akFCY 43 (404)
.|+.|+.++...... +. .|.|+++. +++++.+..+|+
T Consensus 22 ~S~~i~~ml~~~~~~-~~-~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 22 QSKTIKNMLEDLGDE-DE-PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp TSHHHHHHHHCTCCC-GT-EEEETTS---HHHHHHHHHHHH
T ss_pred HhHHHHHHHhhhccc-cc-ccccCccC--HHHHHHHHHHHH
Confidence 588999999876644 22 57777655 579999999997
No 18
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=35.33 E-value=20 Score=29.32 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=14.2
Q ss_pred cchhHHHHHhhhcCCC
Q 015578 372 DGLYRAIDTYLKPIVF 387 (404)
Q Consensus 372 DgLYRAIDiYLKaHp~ 387 (404)
=+||-||+.||+.|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 3799999999999975
No 19
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=34.48 E-value=53 Score=35.01 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=58.9
Q ss_pred ccccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhHhhhcCccccCCCchHHHHHH
Q 015578 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (404)
Q Consensus 2 SkSg~l~rl~~~~~~~~~~~~i~l~dfPGGaeaFEl~akFCYg~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~~tE~ 81 (404)
.||.|||-|+..--.+.....|-|. --.+|||-..-|+-|.+++.++----- ---+||+|.-.|+-..|-.-+-.
T Consensus 65 aRs~yFRAlLYgGm~Es~q~~ipLq--~t~~eAF~~lLrYiYtg~~~l~~~~ed---~lld~LslAh~Ygf~~Le~aiSe 139 (620)
T KOG4350|consen 65 ARSSYFRALLYGGMQESHQQLIPLQ--ETNSEAFRALLRYIYTGKIDLAGVEED---ILLDYLSLAHRYGFIQLETAISE 139 (620)
T ss_pred HHHHHHHHHHhhhhhhhhhcccccc--cccHHHHHHHHHHHhhcceecccchHH---HHHHHHHHHHhcCcHHHHHHHHH
Confidence 4899999998753221111223332 235899999999999999998765443 33589999999998888888899
Q ss_pred Hhhhhh
Q 015578 82 FLTLVI 87 (404)
Q Consensus 82 fL~~~v 87 (404)
||.++.
T Consensus 140 Yl~~iL 145 (620)
T KOG4350|consen 140 YLKEIL 145 (620)
T ss_pred HHHHHH
Confidence 998853
No 20
>PHA00617 ribbon-helix-helix domain containing protein
Probab=32.14 E-value=62 Score=26.64 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=32.5
Q ss_pred cccChHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhh
Q 015578 147 ATLGIDHFMRIITTIKVKGT-KPEIIGKCIMHYAKKW 182 (404)
Q Consensus 147 ~~L~~~~f~rvi~am~~~g~-~~~~i~~~L~~Ya~~~ 182 (404)
..||.++.+++-.-.+..|. ++++|-++|..|...|
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee~ 80 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEEV 80 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhC
Confidence 57999999999999999996 7899999999999876
No 21
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=30.58 E-value=62 Score=21.85 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=28.6
Q ss_pred ccChHHHHHHHHHHHhcCC-CchhHHHHHHHHHHh
Q 015578 148 TLGIDHFMRIITTIKVKGT-KPEIIGKCIMHYAKK 181 (404)
Q Consensus 148 ~L~~~~f~rvi~am~~~g~-~~~~i~~~L~~Ya~~ 181 (404)
.||.+.++++=...+..|+ ..++|-.+|..|+.+
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 5788889998888888998 588999999999864
No 22
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=28.06 E-value=34 Score=39.18 Aligned_cols=51 Identities=27% Similarity=0.445 Sum_probs=37.6
Q ss_pred hhhHhhhhcCCCCCChhHHHHHHHhcCCcc--c-----ccCcchhH-HHHHhhhcCCCC
Q 015578 338 LDNYLAEVARDPNLSITKFQVLAESLPENA--R-----TCHDGLYR-AIDTYLKPIVFF 388 (404)
Q Consensus 338 vD~YLaEiA~D~nL~~~kF~~Lae~lP~~a--R-----~~hDgLYR-AIDiYLKaHp~l 388 (404)
+|.|=.+-.+|..+.+..|..+++.+|.++ . ..+=|+.. |++--.+.+|..
T Consensus 277 f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~ 335 (802)
T PF13764_consen 277 FDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSL 335 (802)
T ss_pred hhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCccc
Confidence 566656777888899999999999999887 2 34556776 888444455665
No 23
>PRK15322 invasion protein OrgB; Provisional
Probab=23.72 E-value=1.1e+02 Score=29.41 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=59.5
Q ss_pred ccchHHHHHHHHHHHhhHhhhhh-h--hcchhhhhhhhchhhHhhhhcCCC--------------------CCChhHHHH
Q 015578 302 MHNIDVVQRIMDYFLMHEQQQQQ-K--QQNMGKTNVSKILDNYLAEVARDP--------------------NLSITKFQV 358 (404)
Q Consensus 302 lyDVd~V~riv~~Fl~~~~~~~~-~--~~~~~~~~VakLvD~YLaEiA~D~--------------------nL~~~kF~~ 358 (404)
+-++|...++++.|+........ . .-+..-++-+.-+-.||.+..+++ ..+|..|++
T Consensus 89 Ld~pd~LL~~le~Wl~~l~~~~~pL~l~lP~~ak~~~~~L~~~l~e~w~~~~~i~yhd~~rFV~~~g~qIaEFsPq~~v~ 168 (210)
T PRK15322 89 VDHPETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKLMVLLMENWPGTFNLKYHQEQRFIMSCGDQIAEFSPEQFVE 168 (210)
T ss_pred ccCHHHHHHHHHHHHHhCccccCceeEecChhhhhhHHHHHHHHHHhcCCCeEEEEcCCCceEEEeCCchhccCHHHHHH
Confidence 34688999999999986543221 0 112334455556667777766543 468999999
Q ss_pred HHHh--------cCCcccccCcchhHHHHHhhhcCC
Q 015578 359 LAES--------LPENARTCHDGLYRAIDTYLKPIV 386 (404)
Q Consensus 359 Lae~--------lP~~aR~~hDgLYRAIDiYLKaHp 386 (404)
.|+. +|.-+|...||=-.|.=-|||.|-
T Consensus 169 ~a~~~l~~~~d~~~~~~r~ls~~~l~al~~~~~~~~ 204 (210)
T PRK15322 169 TAVGVIKHHLDELPQDCRTISDNAINALIDEWKTKT 204 (210)
T ss_pred HHHHHHHhCccchHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9986 677888888888888888888874
Done!