BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015579
         (404 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
          Length = 163

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 48  QARAGPSPCEFSSSPLNTPLEPNSPAGKFLSRVLQNQ 84
           Q   GP P  ++   +NTPL PN   G F +RV+Q +
Sbjct: 78  QPLGGPEPGPYAQPSINTPL-PNLQNGPFYARVIQKR 113


>pdb|3HLK|A Chain A, Crystal Structure Of Human Mitochondrial Acyl-Coa
           Thioesterase (Acot2)
 pdb|3HLK|B Chain B, Crystal Structure Of Human Mitochondrial Acyl-Coa
           Thioesterase (Acot2)
          Length = 446

 Score = 28.9 bits (63), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 239 YVASILYGYFLKSASLRYYLEECLASAHQDLHLTHRNSLQFPEAWSYGLKQNQVVGCVNN 298
           Y AS+L G      +L YY  E L    + LHL +     F EA +Y L   +V G    
Sbjct: 190 YRASLLAGKGFAVXALAYYNYEDLPKTXETLHLEY-----FEEAXNYLLSHPEVKGPGVG 244

Query: 299 TQSISLG 305
              IS G
Sbjct: 245 LLGISKG 251


>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
          Length = 304

 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 48  QARAGPSPCEFSSSPLNTPLEPNSPAGKFLSRVLQNQ 84
           Q   GP P  ++   +NTPL PN   G   +RV+Q +
Sbjct: 211 QPLGGPEPGPYAQPSVNTPL-PNLQNGPIYARVIQKR 246


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,717,325
Number of Sequences: 62578
Number of extensions: 455178
Number of successful extensions: 1148
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 5
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)