Query 015579
Match_columns 404
No_of_seqs 98 out of 116
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 07:37:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05542 DUF760: Protein of un 99.9 2.2E-25 4.9E-30 182.5 7.2 65 196-263 21-86 (86)
2 PF05542 DUF760: Protein of un 97.6 0.00028 6E-09 58.3 7.2 76 317-393 2-77 (86)
3 PF08763 Ca_chan_IQ: Voltage g 69.3 4.5 9.7E-05 29.3 2.4 25 232-256 3-27 (35)
4 PRK04750 ubiB putative ubiquin 25.8 47 0.001 36.1 2.4 28 76-103 68-95 (537)
5 PF12037 DUF3523: Domain of un 25.0 99 0.0022 31.4 4.3 27 322-348 26-60 (276)
6 TIGR01982 UbiB 2-polyprenylphe 23.5 61 0.0013 33.8 2.6 32 72-103 62-93 (437)
7 TIGR01010 BexC_CtrB_KpsE polys 22.3 2.3E+02 0.005 28.5 6.3 67 84-169 241-307 (362)
8 PF10691 DUF2497: Protein of u 20.8 97 0.0021 25.6 2.7 26 76-101 46-72 (73)
9 PF07439 DUF1515: Protein of u 16.3 2.1E+02 0.0045 25.8 3.9 51 89-155 3-56 (112)
10 PF11943 DUF3460: Protein of u 14.4 1.1E+02 0.0024 24.7 1.5 20 69-88 3-22 (60)
No 1
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=99.92 E-value=2.2e-25 Score=182.51 Aligned_cols=65 Identities=31% Similarity=0.452 Sum_probs=62.3
Q ss_pred cCchHHHHHHHHHHHHhhccc-cCCCCCCCcceEEechhhhhhHHHHHhhhhHhhhhhhhHhHHHHHHh
Q 015579 196 IHEFEVLEMIREHISTVIGLR-ANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLA 263 (404)
Q Consensus 196 ihS~Ev~EmI~~hl~~vLG~~-~~~~~~~~~~~v~isr~~Lg~vYAASmMyGYFLr~aeqR~qLE~sl~ 263 (404)
+|||||+|+|++||.+|||++ |++.|+ ++++++|++||+||+++||||||||++|+|++||++|+
T Consensus 21 ~~s~ev~e~m~~~v~~llG~l~p~~~~~---~~i~~s~~~La~L~~~~mm~GYfLr~~E~R~~Le~sL~ 86 (86)
T PF05542_consen 21 PASPEVLEAMKQHVSGLLGNLSPSDQFN---VTIQTSRENLAQLLAWSMMTGYFLRNAEQRLELERSLK 86 (86)
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCcccCc---ceeEECHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999 887665 89999999999999999999999999999999999985
No 2
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=97.57 E-value=0.00028 Score=58.34 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=68.7
Q ss_pred hhhhhhhcCCHHHHHHHhhhhhHHHHHHHHHhhhhhccCCCCCCCCCCceEEechhhhHHHHHHHHhhhhhhhhhhc
Q 015579 317 NLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEE 393 (404)
Q Consensus 317 ~Lr~YVmsFD~eTLqr~A~irSkEAv~lIEkhT~ALFG~~~~g~~~~DE~I~isfssLkrLVLEAVAFGSFLWDvEs 393 (404)
.|=.||.+.+||++++-+++.|.|.+++|++|+..+-|.-. -....+-+|.++-..|-+|..=++.+|=|||.+|-
T Consensus 2 ~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~-p~~~~~~~i~~s~~~La~L~~~~mm~GYfLr~~E~ 77 (86)
T PF05542_consen 2 DLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLS-PSDQFNVTIQTSRENLAQLLAWSMMTGYFLRNAEQ 77 (86)
T ss_pred hHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCC-CcccCcceeEECHHHHHHHHHHHHHHhHHHHHHHH
Confidence 57789999999999999999999999999999999999875 23346678999999999999999999999999884
No 3
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=69.33 E-value=4.5 Score=29.35 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=20.3
Q ss_pred hhhhhhHHHHHhhhhHhhhhhhhHh
Q 015579 232 RLRLGRVYVASILYGYFLKSASLRY 256 (404)
Q Consensus 232 r~~Lg~vYAASmMyGYFLr~aeqR~ 256 (404)
..++|++|||=|++-||-+.-..|.
T Consensus 3 ~~TVGK~YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 3 EVTVGKFYATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999987666554
No 4
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=25.80 E-value=47 Score=36.10 Aligned_cols=28 Identities=29% Similarity=0.492 Sum_probs=24.3
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHHhH
Q 015579 76 FLSRVLQNQRQYFNLAVSDELKLLANDR 103 (404)
Q Consensus 76 fL~~iL~~~phLf~~Av~~qL~~L~~dr 103 (404)
-|.|+|-++|+|||..+.++|.+||++-
T Consensus 68 KlGQ~LStR~DllP~~~~~eL~~Lqd~v 95 (537)
T PRK04750 68 KFGQMLSTRRDLFPPDIADELALLQDRV 95 (537)
T ss_pred HHHHHHHcCcccCCHHHHHHHHHHHcCC
Confidence 3567777999999999999999999864
No 5
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=25.00 E-value=99 Score=31.40 Aligned_cols=27 Identities=44% Similarity=0.759 Sum_probs=20.3
Q ss_pred hhcCCHHHHHHHhhhh--------hHHHHHHHHHh
Q 015579 322 VMGFDPETLQRCAKLR--------SREAVNLVEKH 348 (404)
Q Consensus 322 VmsFD~eTLqr~A~ir--------SkEAv~lIEkh 348 (404)
--+|||+.|.|.|+-- .|+|.+|+-+|
T Consensus 26 ~~~FDP~aLERaAkAlrel~~S~~Ak~afel~k~Q 60 (276)
T PF12037_consen 26 ASGFDPEALERAAKALRELNSSPHAKKAFELMKKQ 60 (276)
T ss_pred cCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Confidence 3489999999999853 46677776555
No 6
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=23.46 E-value=61 Score=33.84 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=26.3
Q ss_pred chhhHHHHHHhhcccchHHHHHHHHHHHHHhH
Q 015579 72 PAGKFLSRVLQNQRQYFNLAVSDELKLLANDR 103 (404)
Q Consensus 72 p~GqfL~~iL~~~phLf~~Av~~qL~~L~~dr 103 (404)
|.---|.|+|-++|+|||...-++|+.||++-
T Consensus 62 p~fiKlGQ~lS~r~dllp~~~~~~L~~Lqd~v 93 (437)
T TIGR01982 62 PTFIKFGQTLSTRADLLPADIAEELSLLQDRV 93 (437)
T ss_pred chhHHHhHHHHhCcccCCHHHHHHHHHHhcCC
Confidence 34445677777999999999999999999853
No 7
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.28 E-value=2.3e+02 Score=28.46 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=49.6
Q ss_pred cccchHHHHHHHHHHHHHhHHHHHHhccCCCCCCCCceeeeccCCCCCCCchhhhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 015579 84 QRQYFNLAVSDELKLLANDRDAAVARMSLSSGSDEGPLHRVVSGSAHGADSCFCWIAQLKEHECQTAVEDVMYMLILYKF 163 (404)
Q Consensus 84 ~phLf~~Av~~qL~~L~~drdaa~~~~~~ss~~~e~~LyrR~~~~~~~~~~~~~~IAevKe~Err~alEdImY~lIv~KF 163 (404)
||++- ++..+++.|....++...+...+. ...+=.. .++..+.+|..++.+-+|...+.++
T Consensus 241 ~P~v~--~l~~~i~~l~~~i~~e~~~i~~~~---~~~l~~~--------------~~~~~~L~re~~~a~~~y~~~l~r~ 301 (362)
T TIGR01010 241 NPQVP--SLQARIKSLRKQIDEQRNQLSGGL---GDSLNEQ--------------TADYQRLVLQNELAQQQLKAALTSL 301 (362)
T ss_pred CCchH--HHHHHHHHHHHHHHHHHHHhhcCC---CccHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77764 556777777777777666553221 1233344 7899999999999999999999999
Q ss_pred HhcCCc
Q 015579 164 SEIRVQ 169 (404)
Q Consensus 164 ~e~~V~ 169 (404)
.++++.
T Consensus 302 ~~a~~~ 307 (362)
T TIGR01010 302 QQTRVE 307 (362)
T ss_pred HHHHHH
Confidence 999865
No 8
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=20.79 E-value=97 Score=25.56 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.7
Q ss_pred HHHHHHhhc-ccchHHHHHHHHHHHHH
Q 015579 76 FLSRVLQNQ-RQYFNLAVSDELKLLAN 101 (404)
Q Consensus 76 fL~~iL~~~-phLf~~Av~~qL~~L~~ 101 (404)
+|.+-|..| |.+++..|..+++++..
T Consensus 46 mLkeWLD~nLP~lVErlVr~EIeRi~r 72 (73)
T PF10691_consen 46 MLKEWLDENLPGLVERLVREEIERIAR 72 (73)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhc
Confidence 677888888 99999999999998763
No 9
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=16.33 E-value=2.1e+02 Score=25.76 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHh---ccCCCCCCCCceeeeccCCCCCCCchhhhHHHhhHHHHHHHHHHHH
Q 015579 89 NLAVSDELKLLANDRDAAVAR---MSLSSGSDEGPLHRVVSGSAHGADSCFCWIAQLKEHECQTAVEDVM 155 (404)
Q Consensus 89 ~~Av~~qL~~L~~drdaa~~~---~~~ss~~~e~~LyrR~~~~~~~~~~~~~~IAevKe~Err~alEdIm 155 (404)
.+.+.||++.|+.+-+...+. .+.-+.......||| |-|| .+|-..+|--|
T Consensus 3 ~a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrR--------------lDEl--V~Rv~~lEs~~ 56 (112)
T PF07439_consen 3 DAGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRR--------------LDEL--VERVTTLESSV 56 (112)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHh--------------HHHH--HHHHHHHHHHH
Confidence 466778888777776654432 222234455789999 9999 56777777443
No 10
>PF11943 DUF3460: Protein of unknown function (DUF3460); InterPro: IPR021853 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.
Probab=14.43 E-value=1.1e+02 Score=24.70 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=17.6
Q ss_pred CCCchhhHHHHHHhhcccch
Q 015579 69 PNSPAGKFLSRVLQNQRQYF 88 (404)
Q Consensus 69 ~~Sp~GqfL~~iL~~~phLf 88 (404)
-+|.+-|||.+++..||+|-
T Consensus 3 Y~Se~TqFl~~lk~~~Pele 22 (60)
T PF11943_consen 3 YQSEITQFLNQLKAKHPELE 22 (60)
T ss_pred ccCHHHHHHHHHHHhCCchH
Confidence 36889999999999999973
Done!