Query 015579
Match_columns 404
No_of_seqs 98 out of 116
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 15:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dve_B Voltage-dependent N-typ 46.0 7.1 0.00024 25.1 1.0 19 234-252 1-19 (23)
2 3dvk_B Voltage-dependent R-typ 41.3 12 0.00043 24.0 1.6 19 234-252 2-20 (23)
3 3bxl_B CAM, voltage-dependent 30.9 25 0.00086 23.2 1.8 20 237-256 1-20 (26)
4 3g43_E Voltage-dependent L-typ 29.7 16 0.00054 29.8 0.9 20 231-250 56-75 (81)
5 2xf7_A GP23.1; viral protein; 21.3 23 0.00078 26.3 0.3 21 242-262 4-24 (51)
6 2f6m_A Suppressor protein STP2 8.8 1.4E+02 0.0049 23.1 1.7 18 139-158 8-25 (65)
7 2kbv_A Sodium/hydrogen exchang 8.7 84 0.0029 20.8 0.3 22 367-392 5-27 (28)
8 2liu_A CURA; holo state, trans 6.6 3.1E+02 0.01 20.3 2.7 26 192-217 13-38 (99)
9 2lht_A Cellophane-induced prot 8.9 1.1E+02 0.0037 26.0 0.0 30 120-152 64-93 (122)
10 1y74_B MLIN-2/CASK, peripheral 6.4 1.1E+02 0.0036 21.8 -0.1 21 65-87 13-33 (50)
No 1
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=46.00 E-value=7.1 Score=25.11 Aligned_cols=19 Identities=21% Similarity=0.787 Sum_probs=15.7
Q ss_pred hhhhHHHHHhhhhHhhhhh
Q 015579 234 RLGRVYVASILYGYFLKSA 252 (404)
Q Consensus 234 ~Lg~vYAASmMyGYFLr~a 252 (404)
.+|++||+=|++-||=+.-
T Consensus 1 ~VGKiYAallI~d~~r~~k 19 (23)
T 3dve_B 1 HMGKVYAALMIFDFYKQNK 19 (26)
T ss_dssp CCHHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHHHHHh
Confidence 3799999999999996543
No 2
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=41.31 E-value=12 Score=23.97 Aligned_cols=19 Identities=26% Similarity=0.772 Sum_probs=16.1
Q ss_pred hhhhHHHHHhhhhHhhhhh
Q 015579 234 RLGRVYVASILYGYFLKSA 252 (404)
Q Consensus 234 ~Lg~vYAASmMyGYFLr~a 252 (404)
.+|++||+=|++-||-+.-
T Consensus 2 ~VGKiYA~llI~d~~r~~k 20 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSK 20 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHh
Confidence 4799999999999997653
No 3
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=30.85 E-value=25 Score=23.17 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=16.2
Q ss_pred hHHHHHhhhhHhhhhhhhHh
Q 015579 237 RVYVASILYGYFLKSASLRY 256 (404)
Q Consensus 237 ~vYAASmMyGYFLr~aeqR~ 256 (404)
+||||=||+-||=+.=..|-
T Consensus 1 KvYAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 1 KIYAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred ChhHHHHHHHHHHHHHhhhh
Confidence 48999999999977666554
No 4
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=29.74 E-value=16 Score=29.77 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=15.4
Q ss_pred chhhhhhHHHHHhhhhHhhh
Q 015579 231 QRLRLGRVYVASILYGYFLK 250 (404)
Q Consensus 231 sr~~Lg~vYAASmMyGYFLr 250 (404)
+.+++|++||+=|++-||=+
T Consensus 56 ~~lTVGKiYA~llI~d~~r~ 75 (81)
T 3g43_E 56 DEVTVGKFYATFLIQEYFRK 75 (81)
T ss_dssp ---CCCCHHHHHHHHHHHHH
T ss_pred CcEeehHHHHHHHHHHHHHH
Confidence 56889999999999999944
No 5
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=21.34 E-value=23 Score=26.34 Aligned_cols=21 Identities=52% Similarity=0.599 Sum_probs=13.2
Q ss_pred HhhhhHhhhhhhhHhHHHHHH
Q 015579 242 SILYGYFLKSASLRYYLEECL 262 (404)
Q Consensus 242 SmMyGYFLr~aeqR~qLE~sl 262 (404)
|++||||+-.-..--.+|.-|
T Consensus 4 S~L~G~F~D~W~~GT~~~~~m 24 (51)
T 2xf7_A 4 SLLYGYFLDSWLDGTASEELL 24 (51)
T ss_dssp CTTHHHHHHHHHHTCCCHHHH
T ss_pred hHHHHHHHHHHhcchhhHHHH
Confidence 689999997654433334333
No 6
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=8.77 E-value=1.4e+02 Score=23.14 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=12.1
Q ss_pred HHHhhHHHHHHHHHHHHHHH
Q 015579 139 IAQLKEHECQTAVEDVMYML 158 (404)
Q Consensus 139 IAevKe~Err~alEdImY~l 158 (404)
+=++-+.| .|+||.||.|
T Consensus 8 ll~l~Aed--~AieDaiy~L 25 (65)
T 2f6m_A 8 LYNLVAQD--YALTDTIEAL 25 (65)
T ss_dssp HHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHH
Confidence 33444444 5999999986
No 7
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=8.73 E-value=84 Score=20.78 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=14.7
Q ss_pred EEechhhhHHHHHHHHhhh-hhhhhhh
Q 015579 367 ILTSFSSLKRLVLEAIAFG-SFLWDAE 392 (404)
Q Consensus 367 I~isfssLkrLVLEAVAFG-SFLWDvE 392 (404)
..+.|+|||= ||||+ +|+||.|
T Consensus 5 ~i~~~~GLRG----AvafaL~~~l~~~ 27 (28)
T 2kbv_A 5 FIIAYGGLRG----AIAFSLGYLLDKK 27 (28)
T ss_dssp HHTTTTSSCH----HHHHHHHHHHHHC
T ss_pred eEEEeecchH----HHHHHHHHhccCC
Confidence 3478889887 67776 4555554
No 8
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Probab=6.64 E-value=3.1e+02 Score=20.28 Aligned_cols=26 Identities=4% Similarity=0.276 Sum_probs=20.0
Q ss_pred cccccCchHHHHHHHHHHHHhhcccc
Q 015579 192 ELESIHEFEVLEMIREHISTVIGLRA 217 (404)
Q Consensus 192 ~Le~ihS~Ev~EmI~~hl~~vLG~~~ 217 (404)
.+......++.+.|++.+..+||.-+
T Consensus 13 ~~~~~~~~~~~~~l~~~~~~~l~~~~ 38 (99)
T 2liu_A 13 QVNQVNLSEIKQVLKQQLAEALYTEE 38 (99)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTTSCG
T ss_pred ccCcCCHHHHHHHHHHHHHHHHCcCH
Confidence 34445667889999999999998754
No 9
>2lht_A Cellophane-induced protein 1; secreted repeat domain, cell adhesion; NMR {Venturia inaequalis}
Probab=8.94 E-value=1.1e+02 Score=26.04 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=22.5
Q ss_pred ceeeeccCCCCCCCchhhhHHHhhHHHHHHHHH
Q 015579 120 PLHRVVSGSAHGADSCFCWIAQLKEHECQTAVE 152 (404)
Q Consensus 120 ~LyrR~~~~~~~~~~~~~~IAevKe~Err~alE 152 (404)
++|.- ...--|.-||-.+-.||+|||+-+.
T Consensus 64 ~vygy---dgkpld~~fc~~~g~~e~~crkd~~ 93 (122)
T 2lht_A 64 VVYGY---DGKPLDLGFCTLAGIREVDCRKDAQ 93 (122)
Confidence 55554 3344678899999999999998654
No 10
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=6.37 E-value=1.1e+02 Score=21.76 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=16.5
Q ss_pred CCCCCCCchhhHHHHHHhhcccc
Q 015579 65 TPLEPNSPAGKFLSRVLQNQRQY 87 (404)
Q Consensus 65 aPl~~~Sp~GqfL~~iL~~~phL 87 (404)
+|+. .++.++-|..+|+. ||+
T Consensus 13 ~~~~-~~~~~~EL~~lL~~-PHf 33 (50)
T 1y74_B 13 SCYP-ENNDAKELKRILTQ-PHF 33 (50)
T ss_dssp HTCS-SCHHHHHHHHHHHS-HHH
T ss_pred hcCC-CChHHHHHHHHHcC-HHH
Confidence 4553 48999999999987 885
Done!