Query 015579
Match_columns 404
No_of_seqs 98 out of 116
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 15:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015579.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015579hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fnaa1 a.4.5.11 (A:284-356) H 13.1 31 0.0022 25.6 1.1 21 376-397 9-30 (73)
2 d2nn6a2 d.101.1.1 (A:185-302) 11.0 1.1E+02 0.0077 23.3 3.8 32 324-355 57-88 (118)
3 d2nn6c2 d.101.1.1 (C:188-276) 9.9 1.3E+02 0.0094 21.3 3.8 29 324-352 55-83 (89)
4 d2cvoa1 c.2.1.3 (A:68-218,A:38 9.0 54 0.0039 26.5 1.4 15 73-87 17-31 (183)
5 d1cmza_ a.91.1.1 (A:) Galpha i 8.5 58 0.0042 24.4 1.3 49 157-213 62-110 (128)
6 d2nn6e2 d.101.1.1 (E:192-285) 8.3 1.6E+02 0.012 21.1 3.8 29 324-352 55-83 (94)
7 d2g17a1 c.2.1.3 (A:1-153,A:309 7.8 68 0.0049 25.5 1.5 15 73-87 13-27 (179)
8 d1v4aa2 d.218.1.9 (A:2-286) Gl 7.8 45 0.0033 29.5 0.4 20 75-94 39-58 (285)
9 d2f6ma1 a.2.17.1 (A:322-385) V 7.5 83 0.0061 22.6 1.7 10 149-158 15-24 (64)
10 d1h9aa2 d.81.1.5 (A:182-412,A: 7.5 39 0.0028 30.2 -0.3 22 201-222 52-73 (290)
No 1
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=13.08 E-value=31 Score=25.60 Aligned_cols=21 Identities=10% Similarity=0.257 Sum_probs=15.1
Q ss_pred HHHHHHHhhhhhhh-hhhccccc
Q 015579 376 RLVLEAIAFGSFLW-DAEEYADA 397 (404)
Q Consensus 376 rLVLEAVAFGSFLW-DvEsyVDs 397 (404)
..||+|||+|+- | ++=.||+.
T Consensus 9 ~~ILkaia~G~r-Ws~IK~yle~ 30 (73)
T d2fnaa1 9 LNIMRTLSKCGK-WSDVKRALEL 30 (73)
T ss_dssp HHHHHHHTTCBC-HHHHHHHHHH
T ss_pred HHHHHHHHccCc-HHHHHHHHHH
Confidence 579999999975 6 45555543
No 2
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.04 E-value=1.1e+02 Score=23.28 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=28.7
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhhccC
Q 015579 324 GFDPETLQRCAKLRSREAVNLVEKHSCALFGD 355 (404)
Q Consensus 324 sFD~eTLqr~A~irSkEAv~lIEkhT~ALFG~ 355 (404)
.|+++++.+|..+..+.+-.|.+..-.||-.+
T Consensus 57 ~l~~~~l~~~~~~A~~~~~el~~~i~~aLk~~ 88 (118)
T d2nn6a2 57 MLLKDQVLRCSKIAGVKVAEITELILKALEND 88 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999998643
No 3
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.87 E-value=1.3e+02 Score=21.33 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=26.3
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhh
Q 015579 324 GFDPETLQRCAKLRSREAVNLVEKHSCAL 352 (404)
Q Consensus 324 sFD~eTLqr~A~irSkEAv~lIEkhT~AL 352 (404)
.|++++|+.|..+..+.+-.|.+..-+||
T Consensus 55 ~l~~~~l~~~~~~A~~~~~~l~~~l~~al 83 (89)
T d2nn6c2 55 GLTGAKLQDCMSRAVTRHKEVKKLMDEVI 83 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999888877
No 4
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=9.01 E-value=54 Score=26.52 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.7
Q ss_pred hhhHHHHHHhhcccc
Q 015579 73 AGKFLSRVLQNQRQY 87 (404)
Q Consensus 73 ~GqfL~~iL~~~phL 87 (404)
+||-|-++|.+||+.
T Consensus 17 vG~elirLL~~HP~~ 31 (183)
T d2cvoa1 17 TGAEIVRLLANHPQF 31 (183)
T ss_dssp HHHHHHHHHTTCSSE
T ss_pred HHHHHHHHHHhCCCc
Confidence 799999999999974
No 5
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.46 E-value=58 Score=24.37 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCccccCCcccccCCccccCCcccccccccCchHHHHHHHHHHHHhh
Q 015579 157 MLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVI 213 (404)
Q Consensus 157 ~lIv~KF~e~~V~mvP~ls~~~~~Grld~wP~~d~~Le~ihS~Ev~EmI~~hl~~vL 213 (404)
.-|..||...+-+.-+.++..+.+. | ...++.++ +++++-++++|..+|
T Consensus 62 ~~Iy~~yi~~~s~~~~~i~~~~r~~-i------~~~~~~~~-~~~F~~aq~~V~~~l 110 (128)
T d1cmza_ 62 RLIYEDYVSILSPKEVSLDSRVREG-I------NKKMQEPS-AHTFDDAQLQIYTLM 110 (128)
T ss_dssp HHHHHHTTTCSSSCCCSCCSHHHHH-H------HHHSSSCC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCccCCcCHHHHHH-H------HHHhcCCC-HHHHHHHHHHHHHHH
Confidence 5689999988887777776532110 1 11233333 566777777776666
No 6
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.27 E-value=1.6e+02 Score=21.08 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=27.1
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhh
Q 015579 324 GFDPETLQRCAKLRSREAVNLVEKHSCAL 352 (404)
Q Consensus 324 sFD~eTLqr~A~irSkEAv~lIEkhT~AL 352 (404)
.|+++++..|-.+..+-+..|.+..-+||
T Consensus 55 ~l~~~~i~~~i~~A~~~~~el~~~l~~~L 83 (94)
T d2nn6e2 55 SLDPESIFEMMETGKRVGKVLHASLQSVV 83 (94)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999988887
No 7
>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}
Probab=7.79 E-value=68 Score=25.52 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=13.7
Q ss_pred hhhHHHHHHhhcccc
Q 015579 73 AGKFLSRVLQNQRQY 87 (404)
Q Consensus 73 ~GqfL~~iL~~~phL 87 (404)
+|+-|-++|.+||+.
T Consensus 13 vG~eLlrlL~~HP~~ 27 (179)
T d2g17a1 13 AGAELVSYVNRHPHM 27 (179)
T ss_dssp HHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHhCCCC
Confidence 699999999999985
No 8
>d1v4aa2 d.218.1.9 (A:2-286) Glutamine synthase adenylyltransferase GlnE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.77 E-value=45 Score=29.54 Aligned_cols=20 Identities=10% Similarity=0.228 Sum_probs=17.0
Q ss_pred hHHHHHHhhcccchHHHHHH
Q 015579 75 KFLSRVLQNQRQYFNLAVSD 94 (404)
Q Consensus 75 qfL~~iL~~~phLf~~Av~~ 94 (404)
.||+.+|..||+++....+.
T Consensus 39 ~~L~~~L~r~P~~l~~L~~~ 58 (285)
T d1v4aa2 39 DFVQDSVIAHPEWLTELESQ 58 (285)
T ss_dssp HHHHHHHHHCTHHHHHHHHS
T ss_pred HHHHHHHHHCHHHHHHHHhC
Confidence 68999999999999887654
No 9
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.47 E-value=83 Score=22.62 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=8.8
Q ss_pred HHHHHHHHHH
Q 015579 149 TAVEDVMYML 158 (404)
Q Consensus 149 ~alEdImY~l 158 (404)
.|+||.||+|
T Consensus 15 ~AieDaiy~L 24 (64)
T d2f6ma1 15 YALTDTIEAL 24 (64)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5899999986
No 10
>d1h9aa2 d.81.1.5 (A:182-412,A:427-485) Glucose 6-phosphate dehydrogenase {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=7.45 E-value=39 Score=30.24 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhccccCCCCC
Q 015579 201 VLEMIREHISTVIGLRANCSVT 222 (404)
Q Consensus 201 v~EmI~~hl~~vLG~~~~~~~~ 222 (404)
+.+||+|||..||...+-+...
T Consensus 52 iRDmvQNHLlQll~lvaMe~P~ 73 (290)
T d1h9aa2 52 LLDMIQNHTMQIVGWLAMEKPE 73 (290)
T ss_dssp HHHTTTTHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 5899999999999988776554
Done!