Citrus Sinensis ID: 015581

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----

MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVRFQLG

cccccccccEEEHHHHHHccccEEEEEEEEEEccccEEEccccEEEEEEEEEcccccccEEEEEEcccccccccccccccEEEEcEEEEEEEccEEEEEEEccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccEEcccccccEEEEEEEEEEEEEEccccEEEEEEEccccccccccccccccccccccccccccccccHHHHHcccccEEEEEEEEccccHHHHHcccccccEEEEEccEEEEEccEEEEEEEccccEEEcccccHHHHHHHHHHHHHHccccccccccccccccccEEEcccccccEEHHHHHHccccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEccccEEEEEEEcccccccccc

ccccccccEEEEHHHHHHccccEEEEEEEEEEcccccccccccEEEEEEEEEcccccccEEEEEEcccHHHcccEcccccEEEEEEEEEEEEcccEEEEEEccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccEEEHHHcccccccEEEEEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccHHHHcccccccEEEEEEEccccHHHHHHHcccccEEEEEEEEEEEcccEEEEEEcccccEEEcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccccEEEEEEEEEEEEccccHHHHccccccEEEEEEEEEEccccEEEEEEEcccHHHHccc

mssqrnqggivRIKELAMHVKHKVNLLGVVLefsiprksqgtdYVCVLKIVddsqqspeLLVNIFTSsidqlprvlsprdliLLKNVMIKKHQAELSAVfykdsssfalfdgnsgsnllpyqsspqrfeiTEAEERRINVLRQWCVgfefssgsndyllslkdisehrYFDLVCKVFHVSYDDSKGLWMLFVwdgtdvpplsipgkledeehnplplhiesspldletlrnffpvgtVLRVSTDRSYENFGRYFTATGKWVRIRNMscqvssgmwhgllqssskirlfsdndnVVWDYMRRFRERisgghghmpiwtdpssqfltevDWVNVASVTLMKIATQLQGNVRCCCIVRVvsihpfqaehysspngsseytmkltledpTARIHALLCGKEWVRFQLG

mssqrnqggivrikelamhVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFtssidqlprvLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVlrvstdrsyenfgryftatgkwvrIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHpfqaehysspngssEYTMKLTLEDPTARIHALLCGKEWVRFQLG

MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNvrcccivrvvSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVRFQLG

********GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDG*****************ITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSI*******************PLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHY*********TMKLTLEDPTARIHALLCGKEWVRF***

******Q***VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGS***************EAEERRINVLRQWC*****************DISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGK*******PLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDN*******************************TEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVRFQLG

********GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVRFQLG

*****NQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVRFQLG

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		404	2.2.26 [Sep-21-2011]
Q56Y52		467	Protection of telomeres p	yes	no	0.948	0.820	0.327	3e-52
Q6NKX5		454	Protection of telomeres p	no	no	0.948	0.843	0.331	2e-44
P62597		778	Protection of telomeres p	yes	no	0.410	0.213	0.303	2e-15
Q9NUX5		634	Protection of telomeres p	yes	no	0.410	0.261	0.320	6e-14
Q95K48		634	Protection of telomeres p	N/A	no	0.410	0.261	0.320	7e-14
A9JTY4		144	Protection of telomeres p	no	no	0.277	0.777	0.315	7e-14
Q91WC1		640	Protection of telomeres p	no	no	0.403	0.254	0.302	8e-12
P29550		493	Telomere-binding protein	N/A	no	0.371	0.304	0.244	0.0008

>sp\|Q56Y52\|POT1A_ARATH Protection of telomeres protein 1a OS=Arabidopsis thaliana GN=POT1A PE=1 SV=1	Back alignment and function desciption

 Score =  206 bits (523), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/412 (32%), Positives = 218/412 (52%), Gaps = 29/412 (7%)

Query: 1   MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPEL 60
           M+ +R    +++IK+    +  +V+L+G+VLE   P++ +  D++C L+I+DD+  SP L
Sbjct: 1   MAKKRESPKLIKIKDAIKLINQQVSLIGIVLEQREPKQCRNNDWICTLRIIDDTYPSPGL 60

Query: 61  LVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQA--ELSAVFYKDSSSFALFDGNSGSNL 118
            VN+F+ +++QLP++ +  D+IL   + ++   +   ++A   +  SSFALF+G    + 
Sbjct: 61  TVNVFSKTLEQLPQIKNHDDMILFTRIKMQTFDSGERVNAACSRWVSSFALFEG---VDF 117

Query: 119 LPYQSSPQRFEITEAEERRINVLRQWCVG----------FEFSSGSNDYLLS-LKDISEH 167
           + YQ S    E     +  ++ LR+   G            + +     + S L++I   
Sbjct: 118 VCYQCSTNFHEEEALYKSAMDDLRKVFAGCSQVIKAMQSISYRTKPCSEVFSFLREIKIG 177

Query: 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKL--EDEEHNPLPLHIESSPLD 225
           + FDLVC++ H   D S     +FVWDGTD PP SI  K   ED+  + L +H   + L 
Sbjct: 178 KRFDLVCRILHADEDTS----AVFVWDGTDAPPASILAKRSEEDKAFSSLSVH---TLLS 230

Query: 226 LETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKI 285
            + L +F  VGT+LRV    S   F  Y    G WV++ ++ C+V  G W   + SS+K+
Sbjct: 231 RDVLLSFPTVGTILRVHL--SSHLF--YRVKPGDWVKLYHLLCEVDRGSWVIKVTSSTKV 286

Query: 286 RLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQ 345
              + +D +V   MR + +R+S   GH+  W  PS   LTE D      VTLM I T  +
Sbjct: 287 HHLAQDDRLVEKIMRIYDKRLSSKLGHISFWCFPSPPGLTETDDNCAPFVTLMDIITFPK 346

Query: 346 GNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKE 397
              +  CIVRVV+ +P+Q E + S      + + LTLED TA + A LC K+
Sbjct: 347 VTCKYRCIVRVVAAYPWQVEDFCSDENRRHHQVLLTLEDSTATLEAFLCNKD 398

Component of the telomerase ribonucleoprotein (RNP) complex that is essential for positive telomere length regulation. Binds specifically the telomerase RNA template component TER1. Does not bind single-stranded telomeric DNA.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q6NKX5\|POT1B_ARATH Protection of telomeres protein 1b OS=Arabidopsis thaliana GN=POT1B PE=1 SV=1	Back alignment and function description

>sp\|P62597\|POTE1_CHICK Protection of telomeres protein 1 OS=Gallus gallus GN=POT1 PE=1 SV=1	Back alignment and function description

>sp\|Q9NUX5\|POTE1_HUMAN Protection of telomeres protein 1 OS=Homo sapiens GN=POT1 PE=1 SV=1	Back alignment and function description

>sp\|Q95K48\|POTE1_MACFA Protection of telomeres protein 1 OS=Macaca fascicularis GN=POT1 PE=2 SV=1	Back alignment and function description

>sp\|A9JTY4\|POT1C_ARATH Protection of telomeres protein 1c OS=Arabidopsis thaliana GN=POT1C PE=2 SV=2	Back alignment and function description

>sp\|Q91WC1\|POTE1_MOUSE Protection of telomeres protein 1 OS=Mus musculus GN=Pot1 PE=2 SV=1	Back alignment and function description

>sp\|P29550\|TEBA_STYMY Telomere-binding protein subunit alpha OS=Stylonychia mytilis GN=STY56V PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		404
255556592		460	conserved hypothetical protein [Ricinus	0.957	0.841	0.492	9e-97
255579267		449	conserved hypothetical protein [Ricinus	0.940	0.846	0.411	6e-80
225456171		487	PREDICTED: uncharacterized protein LOC10	0.957	0.794	0.400	1e-77
297734334		491	unnamed protein product [Vitis vinifera]	0.957	0.788	0.400	1e-77
213495898		466	protection of telomeres 1 protein [Solan	0.980	0.849	0.396	2e-77
213495900		466	protection of telomeres 1 protein [Nicot	0.955	0.828	0.391	3e-74
213495878		462	protection of telomeres 1 protein [Popul	0.970	0.848	0.382	1e-73
213495876		466	protection of telomeres 1 protein [Lactu	0.955	0.828	0.393	3e-73
449439461		449	PREDICTED: protection of telomeres prote	0.930	0.837	0.379	2e-71
213495880		467	protection of telomeres 1 protein [Helia	0.985	0.852	0.384	2e-71

>gi\|255556592\|ref\|XP_002519330.1\| conserved hypothetical protein [Ricinus communis] gi\|223541645\|gb\|EEF43194.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 197/400 (49%), Positives = 268/400 (67%), Gaps = 13/400 (3%)

Query: 11  VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID 70
           + I E+A +V  KVNL+G+V+EFS PRKS GTD+V +LKIVD S QSPEL  NIFT  ++
Sbjct: 8   IPIGEVANYVDKKVNLIGIVVEFSFPRKSNGTDFVSILKIVDQSPQSPELSANIFTEKVE 67

Query: 71  QLPRVLSPRDLILLKNVMIKKHQ--AELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRF 128
            LP V S  DLI L+NV I+K+     ++AVF K  SSF LF G+   ++  YQ+  + F
Sbjct: 68  HLPVVKSHGDLIFLQNVTIEKYDDGGVVNAVFDKRFSSFGLFWGSYADDIFCYQTF-RSF 126

Query: 129 EITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLW 188
            ++ +E   +  LR W       SG+N+YL+S+KDI++  YFDLVC+V HVSYD S+G+W
Sbjct: 127 SLSWSERNDLINLRNWWPNAHLDSGTNEYLVSVKDINKGTYFDLVCQVLHVSYDVSRGVW 186

Query: 189 MLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYE 248
           +LFVWDGTD P LS+  KL+DEE +PLPL +ES PL  + L NF  +GTVLRV  D  +E
Sbjct: 187 ILFVWDGTDAPLLSLDQKLKDEEKDPLPLQVESVPLGRDILCNFHHIGTVLRVMADECHE 246

Query: 249 NFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISG 308
           N    F   GKWVRIRNMS +V +GMW+G L  SSK+RL +DND +V DY R+F+ER S 
Sbjct: 247 NLCPQFQGIGKWVRIRNMSGKVWAGMWYGALNPSSKVRLLADNDGIVVDYKRKFKERKS- 305

Query: 309 GHGHMPIWTDPSSQFLTEVDWVN----VASVTLMKIATQLQGNVRCCCIVRVVSIHPFQA 364
               +P+W+ P+   LTE+++ +    +  +TLM + T+ + +    CIVRVV+IHP++ 
Sbjct: 306 ERDRLPLWS-PNDD-LTEIEYDDEGDSIQFMTLMDVLTRKKDDDLFYCIVRVVAIHPYEL 363

Query: 365 EHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVRFQLG 404
           +   S   S E  M+LTLEDPT RIHA L G++ V+F  G
Sbjct: 364 KVLCS---SDEGVMRLTLEDPTGRIHAYLLGEDLVKFVNG 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255579267\|ref\|XP_002530479.1\| conserved hypothetical protein [Ricinus communis] gi\|223529976\|gb\|EEF31902.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|225456171\|ref\|XP_002278684.1\| PREDICTED: uncharacterized protein LOC100262869 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297734334\|emb\|CBI15581.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|213495898\|gb\|ACJ49169.1\| protection of telomeres 1 protein [Solanum tuberosum]	Back alignment and taxonomy information

>gi\|213495900\|gb\|ACJ49170.1\| protection of telomeres 1 protein [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|213495878\|gb\|ACJ49159.1\| protection of telomeres 1 protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|213495876\|gb\|ACJ49158.1\| protection of telomeres 1 protein [Lactuca sativa]	Back alignment and taxonomy information

>gi\|449439461\|ref\|XP_004137504.1\| PREDICTED: protection of telomeres protein 1a-like [Cucumis sativus] gi\|449503109\|ref\|XP_004161838.1\| PREDICTED: protection of telomeres protein 1a-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|213495880\|gb\|ACJ49160.1\| protection of telomeres 1 protein [Helianthus argophyllus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		404
TAIR\|locus:2051214		467	AtPOT1a "Protection of Telomer	0.948	0.820	0.315	3.8e-46
TAIR\|locus:2164295		454	AtPOT1b "protection of telomer	0.948	0.843	0.329	4e-42
UNIPROTKB\|F1NSB0		778	POT1 "Protection of telomeres	0.519	0.269	0.275	2.2e-15
UNIPROTKB\|P62597		778	POT1 "Protection of telomeres	0.519	0.269	0.275	2.2e-15
UNIPROTKB\|F1P716		785	POT1 "Uncharacterized protein"	0.519	0.267	0.293	1.1e-13
UNIPROTKB\|Q9NUX5		634	POT1 "Protection of telomeres	0.519	0.331	0.293	1.3e-13
UNIPROTKB\|Q95K48		634	POT1 "Protection of telomeres	0.519	0.331	0.293	1.3e-13
UNIPROTKB\|E1BGK3		782	POT1 "Uncharacterized protein"	0.653	0.337	0.266	1.9e-13
ZFIN\|ZDB-GENE-110324-1		773	pot1 "protection of telomeres	0.450	0.235	0.312	8.7e-13
RGD\|1582873		636	Pot1b "protection of telomeres	0.408	0.259	0.294	1.8e-11

TAIR\|locus:2051214 AtPOT1a "Protection of Telomeres 1a" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 130/412 (31%), Positives = 211/412 (51%)

Query:     1 MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPEL 60
             M+ +R    +++IK+    +  +V+L+G+VLE   P++ +  D++C L+I+DD+  SP L
Sbjct:     1 MAKKRESPKLIKIKDAIKLINQQVSLIGIVLEQREPKQCRNNDWICTLRIIDDTYPSPGL 60

Query:    61 LVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQA--ELSAVFYKDSSSFALFDGNSGSNL 118
              VN+F+ +++QLP++ +  D+IL   + ++   +   ++A   +  SSFALF+G    + 
Sbjct:    61 TVNVFSKTLEQLPQIKNHDDMILFTRIKMQTFDSGERVNAACSRWVSSFALFEG---VDF 117

Query:   119 LPYQSSPQRFEITEAEERRINVLRQWCVGFE-----FSSGS------NDYLLSLKDISEH 167
             + YQ S    E     +  ++ LR+   G         S S      ++    L++I   
Sbjct:   118 VCYQCSTNFHEEEALYKSAMDDLRKVFAGCSQVIKAMQSISYRTKPCSEVFSFLREIKIG 177

Query:   168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKL--EDEEHNPLPLHIESSPLD 225
             + FDLVC++ H   D S     +FVWDGTD PP SI  K   ED+  + L +H   + L 
Sbjct:   178 KRFDLVCRILHADEDTSA----VFVWDGTDAPPASILAKRSEEDKAFSSLSVH---TLLS 230

Query:   226 LETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKI 285
              + L +F  VGT+LRV    S   F  Y    G WV++ ++ C+V  G W   + SS+K+
Sbjct:   231 RDVLLSFPTVGTILRVHL--SSHLF--YRVKPGDWVKLYHLLCEVDRGSWVIKVTSSTKV 286

Query:   286 RLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQ 345
                + +D +V   MR + +R+S   GH+  W  PS   LTE D      VTLM I T  +
Sbjct:   287 HHLAQDDRLVEKIMRIYDKRLSSKLGHISFWCFPSPPGLTETDDNCAPFVTLMDIITFPK 346

Query:   346 GNXXXXXXXXXXSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKE 397
                         + +P+Q E + S      + + LTLED TA + A LC K+
Sbjct:   347 VTCKYRCIVRVVAAYPWQVEDFCSDENRRHHQVLLTLEDSTATLEAFLCNKD 398

GO:0000723 "telomere maintenance" evidence=IEA;IMP

GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0032206 "positive regulation of telomere maintenance" evidence=IMP

GO:0043047 "single-stranded telomeric DNA binding" evidence=TAS

GO:0032212 "positive regulation of telomere maintenance via telomerase" evidence=IMP

GO:0042162 "telomeric DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR\|locus:2164295 AtPOT1b "protection of telomeres 1b" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NSB0 POT1 "Protection of telomeres protein 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|P62597 POT1 "Protection of telomeres protein 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P716 POT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NUX5 POT1 "Protection of telomeres protein 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q95K48 POT1 "Protection of telomeres protein 1" [Macaca fascicularis (taxid:9541)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BGK3 POT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-110324-1 pot1 "protection of telomeres 1 homolog" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|1582873 Pot1b "protection of telomeres 1B" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q56Y52	POT1A_ARATH	No assigned EC number	0.3276	0.9480	0.8201	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017843001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (448 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)	•	•	0.484
	GSVIVG00001485001	SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (307 aa)	•	•	0.471
	GSVIVG00004199001	SubName- Full=Chromosome undetermined scaffold_623, whole genome shotgun sequence; (295 aa)	•	•	0.445

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		404
cd04497		138	cd04497, hPOT1_OB1_like, hPOT1_OB1_like: A subfami	2e-26
pfam02765		141	pfam02765, Telo_bind, Telomeric single stranded DN	3e-26
smart00976		137	smart00976, Telo_bind, Telomeric single stranded D	6e-22

>gnl\|CDD\|239943 cd04497, hPOT1_OB1_like, hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP)	Back alignment and domain information

 Score =  102 bits (257), Expect = 2e-26
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 11  VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDS-QQSPELLVNIFTSSI 69
             +          VN++GVV++   P +S+GTDY C L I D S   S  L V +F  + 
Sbjct: 4   TPLSSALKESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNE 63

Query: 70  DQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFE 129
           + LP V    D+ILL+ V I+ +  +   +     SS+A+F G+ G   +P QSS    E
Sbjct: 64  ESLPIV-KVGDIILLRRVKIQSYNGKPQGISNDRGSSWAVFRGDDGVVPIPQQSSKP-VE 121

Query: 130 ITEAEERRINVLRQW 144
               EE  +  LR+W
Sbjct: 122 FGPEEEPSVEELRKW 136

POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB2) which cooperate to bind telomeric ssDNA. OB1 makes more extensive contact with the ssDNA than OB2. OB2 protects the 3' end of the ssDNA. A second OB fold has not been predicted in S. pombe POT1. OnTEBP binds the extreme 3-prime end of telomeric DNA. It is heterodimeric and contains four OB folds - three in the alpha subunit (two in the N-terminal domain and one in the C-terminal domain) and one in the beta subunit. OB1Nalpha, together with the second OB fold of the N-terminal domain of OnTEBP alpha subunit and the beta subunit OB fold, forms a deep cleft that binds ssDNA. Length = 138

>gnl\|CDD\|217218 pfam02765, Telo_bind, Telomeric single stranded DNA binding POT1/CDC13	Back alignment and domain information

>gnl\|CDD\|214949 smart00976, Telo_bind, Telomeric single stranded DNA binding POT1/CDC13	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		404
KOG4757		522	consensus Predicted telomere binding protein [Gene	100.0
cd04497		138	hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f	100.0
PF02765		146	POT1: Telomeric single stranded DNA binding POT1/C	100.0
cd04498		123	hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds simil	99.91
PRK12366		637	replication factor A; Reviewed	99.45
PRK12366		637	replication factor A; Reviewed	99.28
TIGR00617		608	rpa1 replication factor-a protein 1 (rpa1). This f	99.27
PRK07218		423	replication factor A; Provisional	99.08
PRK14699		484	replication factor A; Provisional	99.03
PRK15491		374	replication factor A; Provisional	98.98
PRK07211		485	replication factor A; Reviewed	98.97
PRK06386		358	replication factor A; Reviewed	98.96
PRK15491		374	replication factor A; Provisional	98.82
PRK14699		484	replication factor A; Provisional	98.66
PRK07211		485	replication factor A; Reviewed	98.6
PRK08402		355	replication factor A; Reviewed	98.23
cd04475		101	RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor	98.17
TIGR00617		608	rpa1 replication factor-a protein 1 (rpa1). This f	98.1
PRK06461		129	single-stranded DNA-binding protein; Reviewed	98.05
cd04491		82	SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil	97.69
PRK07218		423	replication factor A; Provisional	97.58
PRK08402		355	replication factor A; Reviewed	97.3
PRK06461		129	single-stranded DNA-binding protein; Reviewed	97.1
cd04497		138	hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f	96.91
cd03524		75	RPA2_OBF_family RPA2_OBF_family: A family of oligo	96.8
KOG3416		134	consensus Predicted nucleic acid binding protein [	96.36
PRK07217		311	replication factor A; Reviewed	96.33
PF02765		146	POT1: Telomeric single stranded DNA binding POT1/C	95.98
PRK07217		311	replication factor A; Reviewed	95.93
PF01336		75	tRNA_anti-codon: OB-fold nucleic acid binding doma	95.88
cd04489		78	ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol	95.82
cd04481		106	RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of unc	95.75
PRK06386		358	replication factor A; Reviewed	95.49
cd04476		166	RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds cor	95.27
cd04474		104	RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor	95.26
PF15489		1144	CTC1: CST, telomere maintenance, complex subunit C	94.97
cd04478		95	RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor	94.64
PRK13480		314	3'-5' exoribonuclease YhaM; Provisional	94.53
cd04485		84	DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp	94.37
cd04475		101	RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor	94.28
cd04491		82	SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil	93.69
cd04492		83	YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol	93.65
cd04483		92	hOBFC1_like hOBFC1_like: A subfamily of OB folds s	93.15
PF13742		99	tRNA_anti_2: OB-fold nucleic acid binding domain	91.64
PF08646		146	Rep_fac-A_C: Replication factor-A C terminal domai	90.75
cd04487		73	RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f	86.83
cd03524		75	RPA2_OBF_family RPA2_OBF_family: A family of oligo	86.1
cd04488		75	RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f	85.56
PF09104		143	BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide	84.8
PRK07373		449	DNA polymerase III subunit alpha; Reviewed	83.54
cd04484		82	polC_OBF polC_OBF: A subfamily of OB folds corresp	81.69
PF09104		143	BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide	80.78
cd04490		79	PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds	80.63

>KOG4757 consensus Predicted telomere binding protein [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=2.2e-43  Score=340.53  Aligned_cols=337  Identities=25%  Similarity=0.283  Sum_probs=244.2

Q ss_pred             CCCCCcceeehHhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEE
Q 015581            3 SQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLI   82 (404)
Q Consensus         3 ~~~~~y~y~~i~~~~~~~~~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII   82 (404)
                      .-++.+.|..+++++.+.+..||+||||++++||++++|+||+||++|+|+...+.||+|++|+++-++||.|+++||||
T Consensus         2 ~~~ds~k~Iri~da~kk~~tiVNl~GiVkef~pp~qs~g~D~~~tv~IvDp~~ss~gLtv~lfSkt~edLP~Ik~~GDii   81 (522)
T KOG4757|consen    2 DVRDSLKLIRISDALKKKNTIVNLIGIVKEFTPPRQSLGKDWVCTVYIVDPDYSSIGLTVHLFSKTGEDLPVIKQVGDII   81 (522)
T ss_pred             CcccchheeechHHHHhcCcEEEEEEEEEeccChhhccCCceEEEEEEeCCCCCCCCcEEEEecCchhhCccccccCcEE
Confidence            45678999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             EEeeEEEEEEcCeeEEEeecCc-eEEEEEeCCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCccccccc
Q 015581           83 LLKNVMIKKHQAELSAVFYKDS-SSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSL  161 (404)
Q Consensus        83 ~l~rvki~~~~g~~~~~~~~~~-ss~~vf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~w~~~~~~~~~~~~f~~~L  161 (404)
                      +|||+|||.|+.+.||+++..+ |+|++|+|+ +.+..|||+|+. |-++       .+||+|++.+.....+ .+ ..+
T Consensus        82 llhRiKiq~y~~rtqgl~s~~fss~~~~Feg~-svd~i~~qssp~-f~~t-------~nlrew~a~~~s~~w~-c~-t~~  150 (522)
T KOG4757|consen   82 LLHRIKIQSYRDRTQGLCSDQFSSAWALFEGN-SVDTICYQSSPR-FMKT-------GNLREWFALYKSKIWD-CQ-TNL  150 (522)
T ss_pred             EEEEEEEEEhhhhhhhhhhcchhhhhhhhcCC-CCCccCCCCchh-hhcc-------chHHHHHHHHhCcccc-cc-cCH
Confidence            9999999999999999998776 459999999 889999999888 8887       7899999988776665 34 566


Q ss_pred             ccccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCC-ccCCCCCccccCCCCChhhhccCCCCceEEE
Q 015581          162 KDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLED-EEHNPLPLHIESSPLDLETLRNFFPVGTVLR  240 (404)
Q Consensus       162 ~di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~pp~G~~l~  240 (404)
                      .++.++.--.|-||+++.. ......|. .|||-|.+-.-++.+..-- --++..|++|++  ++-..+..||..|.+..
T Consensus       151 ~k~fel~cs~l~~q~v~g~-s~~~~~w~-lv~d~~~h~~~s~~~~~~~~~ySlr~~l~~~~--~~T~~~l~Fp~~g~ts~  226 (522)
T KOG4757|consen  151 HKNFELLCSSLARQNVTGL-SYPSVSWS-LVSDITPHQRCSFYAQVIKTWYSLRNPLLYVT--DPTENLLFFPMSGYTSS  226 (522)
T ss_pred             hHhhhhhcchhhhheeecc-ccccceee-eeecccccccccccccceeeEeeccccccccc--CchHhhhhcccCCceee
Confidence            6666666666777777776 44455666 6889665544433331100 011234555544  55566788887777777


Q ss_pred             EEecCchhhhhhccCCCCcEEEEeceE------------EEE-eCcEEEEEEecCC------ceEEcCCCChHHHHHHHH
Q 015581          241 VSTDRSYENFGRYFTATGKWVRIRNMS------------CQV-SSGMWHGLLQSSS------KIRLFSDNDNVVWDYMRR  301 (404)
Q Consensus       241 V~~~~~~~~~~~~~~k~g~wv~l~Nv~------------~k~-~~g~leG~l~~~s------ki~~l~~~d~~v~~r~r~  301 (404)
                      +.-+.+.+++...-+..|.-+..+|+-            ... |-|..+..+++++      .+.+...+.+.+.     
T Consensus       227 ~r~~rv~~e~~i~ilq~~~d~~~~Nl~~e~D~~f~~~~~sl~dh~~lsrc~~~~~saprl~~sl~lhc~~ehll~-----  301 (522)
T KOG4757|consen  227 SRWDRVSEEFSICILQDEHDFYCRNLIKEGDYVFMKNVRSLIDHLGLSRCILHGDSAPRLNMSLELHCSEEHLLN-----  301 (522)
T ss_pred             eeeecccccccchhccccchhhhhhhcccccccccccchhhhHHHHHHHHHHHhhccccccceeEeecCcchhhc-----
Confidence            666665555444444555555555554            333 2232222222221      1111111111110     


Q ss_pred             HHHHHhCCCCCCCCcCCCCCCCCcccccCCCccccHHHHhcCCCCCceEE-EEEEEEe---ecCCCccccc
Q 015581          302 FRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCC-CIVRVVS---IHPFQAEHYS  368 (404)
Q Consensus       302 y~~~~~~~~~~~~~~~~p~~~~~t~~~~~~~p~ttL~~IL~~~~~~~kyr-~~VRVV~---~~P~~l~df~  368 (404)
                             +++  |...+-.++..|-+++...|+++|||+++-+.++.||| |.||+|+   .+|..+|.+.
T Consensus       302 -------ev~--~e~r~~~q~~~tgi~~v~a~fvsl~Ds~t~~~vt~k~R~~vvrfva~~~~~P~sve~l~  363 (522)
T KOG4757|consen  302 -------EVK--PEKRLYVQNCQTGIEAVIAPFVSLMDSETPFIVTEKKRTCVVRFVAHVINYPASVELLT  363 (522)
T ss_pred             -------ccC--cccceeecccccCcchhhcccchhhhhccccccchhcceeeeeehhhcccccchhhhhh
Confidence                   111  00001123567778888999999999999999999999 9999999   9999999984

>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP)	Back alignment and domain information

>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold []	Back alignment and domain information

>cd04498 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1)	Back alignment and domain information

>PRK12366 replication factor A; Reviewed	Back alignment and domain information

>PRK12366 replication factor A; Reviewed	Back alignment and domain information

>TIGR00617 rpa1 replication factor-a protein 1 (rpa1)	Back alignment and domain information

>PRK07218 replication factor A; Provisional	Back alignment and domain information

>PRK14699 replication factor A; Provisional	Back alignment and domain information

>PRK15491 replication factor A; Provisional	Back alignment and domain information

>PRK07211 replication factor A; Reviewed	Back alignment and domain information

>PRK06386 replication factor A; Reviewed	Back alignment and domain information

>PRK15491 replication factor A; Provisional	Back alignment and domain information

>PRK14699 replication factor A; Provisional	Back alignment and domain information

>PRK07211 replication factor A; Reviewed	Back alignment and domain information

>PRK08402 replication factor A; Reviewed	Back alignment and domain information

>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)	Back alignment and domain information

>TIGR00617 rpa1 replication factor-a protein 1 (rpa1)	Back alignment and domain information

>PRK06461 single-stranded DNA-binding protein; Reviewed	Back alignment and domain information

>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB)	Back alignment and domain information

>PRK07218 replication factor A; Provisional	Back alignment and domain information

>PRK08402 replication factor A; Reviewed	Back alignment and domain information

>PRK06461 single-stranded DNA-binding protein; Reviewed	Back alignment and domain information

>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP)	Back alignment and domain information

>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]	Back alignment and domain information

>PRK07217 replication factor A; Reviewed	Back alignment and domain information

>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold []	Back alignment and domain information

>PRK07217 replication factor A; Reviewed	Back alignment and domain information

>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands	Back alignment and domain information

>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit	Back alignment and domain information

>cd04481 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)	Back alignment and domain information

>PRK06386 replication factor A; Reviewed	Back alignment and domain information

>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70)	Back alignment and domain information

>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70)	Back alignment and domain information

>PF15489 CTC1: CST, telomere maintenance, complex subunit CTC1	Back alignment and domain information

>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>PRK13480 3'-5' exoribonuclease YhaM; Provisional	Back alignment and domain information

>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE)	Back alignment and domain information

>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)	Back alignment and domain information

>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB)	Back alignment and domain information

>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1)	Back alignment and domain information

>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1)	Back alignment and domain information

>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain	Back alignment and domain information

>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing	Back alignment and domain information

>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ	Back alignment and domain information

>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG	Back alignment and domain information

>PF09104 BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide-binding, domain 3; InterPro: IPR015188 This domain assumes an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel	Back alignment and domain information

>PRK07373 DNA polymerase III subunit alpha; Reviewed	Back alignment and domain information

>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC)	Back alignment and domain information

>PF09104 BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide-binding, domain 3; InterPro: IPR015188 This domain assumes an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel	Back alignment and domain information

>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		404
1xjv_A		294	Crystal Structure Of Human Pot1 Bound To Telomeric		2e-15
3kjo_A		299	Crystal Structure Of Hpot1v2-Dtrud(Agggttag) Length		2e-15

>pdb|1XJV|A Chain A, Crystal Structure Of Human Pot1 Bound To Telomeric Single- Stranded Dna (Ttagggttag) Length = 294

Back alignment and structure

Iteration: 1

Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 12/178 (6%) Query: 24 VNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLIL 83 VN+ GVV F P S+GTDY V+ IVD Q + +L +F+ + + LP + D++ Sbjct: 18 VNVYGVVKFFKPPYLSKGTDYCSVVTIVD--QTNVKLTCLLFSGNYEALPIIYKNGDIVR 75 Query: 84 LKNVMIKKHQAELSAVFYKDSSSFA--LFDGNSGSNLLPYQSSPQRFEITEAEERRINVL 141 + I+ ++ E + SS FA F+G G+ ++P ++S + F T + + + L Sbjct: 76 FHRLKIQVYKKETQGI---TSSGFASLTFEGTLGAPIIP-RTSSKYFNFTTEDHKMVEAL 131 Query: 142 RQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVP 199 R W S + LL L D+ +YFDL C++ + D ++L VWDGT P Sbjct: 132 RVWASTHMSPSWT---LLKLCDVQPMQYFDLTCQLLGKAEVDGAS-FLLKVWDGTRTP 185

PyMOL of 1xjv

>pdb|3KJO|A Chain A, Crystal Structure Of Hpot1v2-Dtrud(Agggttag) Length = 299

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		404
1xjv_A		294	Protection of telomeres 1; protein-DNA complex, si	2e-53
1jb7_A		495	Telomere-binding protein alpha subunit; DNA-protei	5e-49
1qzg_A		187	Protection of telomeres protein 1; protrein-DNA co	3e-23
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A Length = 294	Back alignment and structure

 Score =  178 bits (453), Expect = 2e-53
 Identities = 71/297 (23%), Positives = 127/297 (42%), Gaps = 40/297 (13%)

Query: 23  KVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLI 82
            VN+ GVV  F  P  S+GTDY  V+ IVD +  + +L   +F+ + + LP +    D++
Sbjct: 17  IVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT--NVKLTCLLFSGNYEALPIIYKNGDIV 74

Query: 83  LLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLR 142
               + I+ ++ E   +     +S   F+G  G+ ++P  SS   F  T  + + +  LR
Sbjct: 75  RFHRLKIQVYKKETQGITSSGFASL-TFEGTLGAPIIPRTSSK-YFNFTTEDHKMVEALR 132

Query: 143 QWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLS 202
            W          +  LL L D+   +YFDL C++   +  D    ++L VWDGT  P  S
Sbjct: 133 VW---ASTHMSPSWTLLKLCDVQPMQYFDLTCQLLGKAEVD-GASFLLKVWDGTRTPFPS 188

Query: 203 IPGKLED---EEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGK 259
               ++D   E        +++  +D+    N   V   L+V                G 
Sbjct: 189 WRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHVARSLKV----------------GS 232

Query: 260 WVRIRNMSCQVSS------------GMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRE 304
           ++RI ++  ++ S               HG       IR+  ++++ V D +++  E
Sbjct: 233 FLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDV-DQLKKDLE 288

PyMOL of 1xjv

>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A Length = 495	Back alignment and structure

>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A Length = 187	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		404
1jb7_A		495	Telomere-binding protein alpha subunit; DNA-protei	100.0
1xjv_A		294	Protection of telomeres 1; protein-DNA complex, si	100.0
4hik_A		143	Protection of telomeres protein 1; specificity, pl	100.0
1qzg_A		187	Protection of telomeres protein 1; protrein-DNA co	100.0
4gop_C		444	Putative uncharacterized protein; OB fold, ssDNA b	99.28
1jmc_A		246	Protein (replication protein A (RPA)); human ssDNA	98.76
2k50_A		115	Replication factor A related protein; uncharacteri	98.56
2k75_A		106	Uncharacterized protein TA0387; closed beta barrel	98.39
1o7i_A		119	SSB, SSO2364, single stranded DNA binding protein;	98.25
1jmc_A		246	Protein (replication protein A (RPA)); human ssDNA	98.21
4gop_C		444	Putative uncharacterized protein; OB fold, ssDNA b	98.2
2kbn_A		109	Conserved protein; nucleic acid binding protein, b	97.88
3dm3_A		105	Replication factor A; probably plays AN essential	97.82
3e0e_A		97	Replication protein A; structural genomics, PSI-2,	97.69
2k75_A		106	Uncharacterized protein TA0387; closed beta barrel	97.62
2k50_A		115	Replication factor A related protein; uncharacteri	97.44
1o7i_A		119	SSB, SSO2364, single stranded DNA binding protein;	97.41
2kbn_A		109	Conserved protein; nucleic acid binding protein, b	97.39
1wjj_A		145	Hypothetical protein F20O9.120; DNA-binding protei	97.26
1wjj_A		145	Hypothetical protein F20O9.120; DNA-binding protei	97.22
3dm3_A		105	Replication factor A; probably plays AN essential	96.61
3e0e_A		97	Replication protein A; structural genomics, PSI-2,	95.94
1ynx_A		114	Replication factor-A protein 1; canonical OB fold,	95.56
1xjv_A		294	Protection of telomeres 1; protein-DNA complex, si	94.98
1jb7_A		495	Telomere-binding protein alpha subunit; DNA-protei	94.6
1ynx_A		114	Replication factor-A protein 1; canonical OB fold,	94.5
1qzg_A		187	Protection of telomeres protein 1; protrein-DNA co	94.44
3u4z_A		109	Telomerase-associated protein 82; TEB1, processivi	94.27
1miu_A		738	BRCA2, breast cancer type 2 susceptibility protein	93.92
1l1o_C		181	Replication protein A 70 kDa DNA-binding subunit;	93.71
4gop_B		136	Putative uncharacterized protein; OB fold, ssDNA b	93.32
3kdf_D		132	Replication protein A 32 kDa subunit; wheat GERM c	92.98
3ebe_A		200	Protein MCM10 homolog; OB-fold, zinc finger, CCCH,	91.37
4hik_A		143	Protection of telomeres protein 1; specificity, pl	91.2
3u58_A		213	Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1	90.88
2pi2_A		270	Replication protein A 32 kDa subunit; FULL-length	90.09

>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A	Back alignment and structure

Probab=100.00  E-value=3.8e-77  Score=611.07  Aligned_cols=348  Identities=19%  Similarity=0.250  Sum_probs=299.7

Q ss_pred             CCCCCcceeehHhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCC-----CCe-----EEEEecCCCCCC
Q 015581            3 SQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQS-----PEL-----LVNIFTSSIDQL   72 (404)
Q Consensus         3 ~~~~~y~y~~i~~~~~~~~~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~-----~gl-----~v~iF~~~~~~L   72 (404)
                      +..++|+|++|++|....++.|||||||+|+++|++|+|+||+|+|+|+|+|+..     .||     +|+||++++++|
T Consensus        31 ~~~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~L  110 (495)
T 1jb7_A           31 DKGHKYEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDL  110 (495)
T ss_dssp             -----CCBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGS
T ss_pred             cccCCCccEEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHC
Confidence            4578899999999987789999999999999999999999999999999999982     389     999999999999


Q ss_pred             CCCCCCCCEEEEeeEEEEEEcCeeEEEeecCc-eEEEEEeCCC------------CCCCCCCccCCCCCCCCHHHHHHHH
Q 015581           73 PRVLSPRDLILLKNVMIKKHQAELSAVFYKDS-SSFALFDGNS------------GSNLLPYQSSPQRFEITEAEERRIN  139 (404)
Q Consensus        73 P~v~~~GDII~l~rvki~~~~g~~~~~~~~~~-ss~~vf~~~~------------~~~~~P~~~s~~~~~~~~~e~~~v~  139 (404)
                      |.|.++||||+|||++|+.|+|++++++++++ |+|+||++..            +.++.||+.|+.+|+++++|++++.
T Consensus       111 P~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v~  190 (495)
T 1jb7_A          111 PIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQ  190 (495)
T ss_dssp             CCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHH
T ss_pred             CCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHHHH
Confidence            99988999999999999999999999999776 8999999987            6778999988667999999999999


Q ss_pred             HHHHhhhcCccc---CCCcccccccc-cccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCCccCCCC
Q 015581          140 VLRQWCVGFEFS---SGSNDYLLSLK-DISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPL  215 (404)
Q Consensus       140 ~Lr~w~~~~~~~---~~~~~f~~~L~-di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~  215 (404)
                      .||+|+.++...   .++++| .+|+ ||++++||||+||||+++ ..++++++|||||||++|+++             
T Consensus       191 ~LR~W~~~~~~~~~~~~~~~f-~~L~~di~~~~f~DLv~qVv~~~-~~d~~~~~L~VwDgT~~~~~~-------------  255 (495)
T 1jb7_A          191 NLRKWANQYFSSYSVISSDMY-TALNKAQAQKGDFDVVAKILQVH-ELDEYTNELKLKDASGQVFYT-------------  255 (495)
T ss_dssp             HHHHHHHHHHHHSCSSCGGGS-CCGGGGGGCSSCEEEEEEEEEEE-ECSSSEEEEEEEETTCCEEEE-------------
T ss_pred             HHHHHHHhcccccccccccch-hhhhhhhccCCceeEEEEEeEEe-ccCCCeEEEEEEeCCCCCcce-------------
Confidence            999999887652   356678 8999 999999999999999999 547899999999999998872             


Q ss_pred             CccccCCCCChhhhccCCCC--ceEEEEEecCchhhhh-hccCCCCcEEEEeceEEEEeCcEEEEEEecCCceE------
Q 015581          216 PLHIESSPLDLETLRNFFPV--GTVLRVSTDRSYENFG-RYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR------  286 (404)
Q Consensus       216 ~~~~~~~~l~~~~~~~~pp~--G~~l~V~~~~~~~~~~-~~~~k~g~wv~l~Nv~~k~~~g~leG~l~~~ski~------  286 (404)
                                .+.++++|.+  |++|+|..++..++.+ .+.++.|.|   +||.          ++..+++++      
T Consensus       256 ----------~~~~~~fP~~~~G~Vlri~~~~~de~~~~l~~~~~~~w---~ni~----------~~~~~sk~~ke~~~~  312 (495)
T 1jb7_A          256 ----------LSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHY---SNII----------TFIQSSKLAKELRAK  312 (495)
T ss_dssp             ----------EEETTTCTTCCTTCEEEEEEEEECTTCCSSCEEEEEEE---EEEE----------EECTTCHHHHHHHHH
T ss_pred             ----------eeccccCCceeeEEEEEEecCccchhhhhhhhhccccc---ccee----------EEcccchhhhhhhhc
Confidence                      2457889988  9999999986655443 466889999   5666          455567777      


Q ss_pred             EcCCCChHHHHHHHHHHHHHhCCCCCCCCcCCCCCCCCcccc--cCCCccccHHHHhcC----CCCCce--EEEEEEEEe
Q 015581          287 LFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVD--WVNVASVTLMKIATQ----LQGNVR--CCCIVRVVS  358 (404)
Q Consensus       287 ~l~~~d~~v~~r~r~y~~~~~~~~~~~~~~~~p~~~~~t~~~--~~~~p~ttL~~IL~~----~~~~~k--yr~~VRVV~  358 (404)
                      +++++   +.++.     +       +|+++.++++.+|+++  |+++|+|||||||++    +++++|  |||+||||+
T Consensus       313 ~l~~~---~~~~~-----~-------~~~~~~~~~~~lT~~~~~~~~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~  377 (495)
T 1jb7_A          313 IQDDH---SVEVA-----S-------LKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTK  377 (495)
T ss_dssp             SCCCC---HHHHH-----H-------TTSSSCSSCEECEEECGGGTTSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEE
T ss_pred             ccchh---hhhhh-----h-------cccccCCCCCcCCeecccCCCCCcEEHHHHhcCcccCccccccccEEEEEEEEE
Confidence            67665   33321     1       5677777778899988  999999999999988    778887  999999999


Q ss_pred             ecCCCccccccC-----------C-----CCcEEEEEEEEeCCC-------ceEEEEEeccccccccc
Q 015581          359 IHPFQAEHYSSP-----------N-----GSSEYTMKLTLEDPT-------ARIHALLCGKEWVRFQL  403 (404)
Q Consensus       359 ~~P~~l~df~~~-----------~-----~~~~~~f~L~leD~t-------~~~~~~v~~~da~~f~~  403 (404)
                      |||+++||||++           .     ++.+|||||||||+|       +||+|||||+||+.||+
T Consensus       378 ~~P~~i~df~~~~~~~~~~~~s~~g~~~~~~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~  445 (495)
T 1jb7_A          378 IEPSDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFN  445 (495)
T ss_dssp             EESSSGGGGEEEEETTTTEEECSTTCGGGCEEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTS
T ss_pred             ecCCCHHHhhhhhccccccccccccccCCCCceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecC
Confidence            999999999954           2     367999999999999       99999999998888884

PyMOL of 1jb7

>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A	Back alignment and structure

>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*	Back alignment and structure

>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A	Back alignment and structure

>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}	Back alignment and structure

>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A	Back alignment and structure

>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}	Back alignment and structure

>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}	Back alignment and structure

>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3	Back alignment and structure

>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A	Back alignment and structure

>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}	Back alignment and structure

>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A	Back alignment and structure

>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}	Back alignment and structure

>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A	Back alignment and structure

>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}	Back alignment and structure

>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}	Back alignment and structure

>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3	Back alignment and structure

>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A	Back alignment and structure

>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3	Back alignment and structure

>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3	Back alignment and structure

>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}	Back alignment and structure

>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A	Back alignment and structure

>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A	Back alignment and structure

>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A	Back alignment and structure

>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A	Back alignment and structure

>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}	Back alignment and structure

>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A	Back alignment and structure

>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3	Back alignment and structure

>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}	Back alignment and structure

>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B	Back alignment and structure

>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A	Back alignment and structure

>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*	Back alignment and structure

>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}	Back alignment and structure

>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		404
d1xjva1		140	b.40.4.3 (A:6-145) Protection of telomeres protein	2e-33
d1jb7a1		169	b.40.4.3 (A:36-204) Telomere end binding protein a	2e-31
d1qzga_		170	b.40.4.3 (A:) Protection of telomeres protein 1, P	6e-29
d1xjva2		151	b.40.4.3 (A:149-299) Protection of telomeres prote	8e-16

>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140	Back information, alignment and structure


class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Protection of telomeres protein 1, Pot1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 2e-33
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 24  VNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLIL 83
           VN+ GVV  F  P  S+GTDY  V+ IVD +  + +L   +F+ + + LP +    D++ 
Sbjct: 18  VNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT--NVKLTCLLFSGNYEALPIIYKNGDIVR 75

Query: 84  LKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQ 143
              + I+ ++ E   +     +S   F+G  G+ ++P  SS   F  T  + + +  LR 
Sbjct: 76  FHRLKIQVYKKETQGITSSGFASLT-FEGTLGAPIIPRTSSK-YFNFTTEDHKMVEALRV 133

Query: 144 W 144
           W
Sbjct: 134 W 134

PyMOL of d1xjva1

>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Length = 169	Back information, alignment and structure

>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 170	Back information, alignment and structure

>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Length = 151	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		404
d1xjva1		140	Protection of telomeres protein 1, Pot1 {Human (Ho	100.0
d1jb7a1		169	Telomere end binding protein alpha subunit {Oxytri	100.0
d1qzga_		170	Protection of telomeres protein 1, Pot1 {Fission y	100.0
d1xjva2		151	Protection of telomeres protein 1, Pot1 {Human (Ho	99.95
d1jmca2		122	Replication protein A 70 KDa subunit (RPA70) {Huma	98.78
d1o7ia_		115	Archaeal ssDNA-binding protein {Archaeon Sulfolobu	97.75
d1o7ia_		115	Archaeal ssDNA-binding protein {Archaeon Sulfolobu	97.7
d1jb7a3		167	Telomere end binding protein alpha subunit {Oxytri	97.48
d1wjja_		145	Hypothetical protein At4g28440 (F20O9.120) {Thale	97.45
d1wjja_		145	Hypothetical protein At4g28440 (F20O9.120) {Thale	97.37
d1jb7a2		124	Telomere end binding protein alpha subunit {Oxytri	96.76
d1jmca2		122	Replication protein A 70 KDa subunit (RPA70) {Huma	96.65
d1xjva1		140	Protection of telomeres protein 1, Pot1 {Human (Ho	95.7
d1jb7a2		124	Telomere end binding protein alpha subunit {Oxytri	95.34
d1jmca1		116	Replication protein A 70 KDa subunit (RPA70) {Huma	95.26
d1l1oc_		178	Replication protein A 70 KDa subunit (RPA70) {Huma	94.46
d1jb7a1		169	Telomere end binding protein alpha subunit {Oxytri	94.35
d1jmca1		116	Replication protein A 70 KDa subunit (RPA70) {Huma	93.26
d1qzga_		170	Protection of telomeres protein 1, Pot1 {Fission y	91.04
d1xjva2		151	Protection of telomeres protein 1, Pot1 {Human (Ho	89.81
d2pi2a1		128	Replication protein A 32 KDa subunit (RPA32) fragm	83.26

>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Protection of telomeres protein 1, Pot1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=278.32  Aligned_cols=138  Identities=25%  Similarity=0.413  Sum_probs=128.7

Q ss_pred             CCcceeehHhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 015581            6 NQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK   85 (404)
Q Consensus         6 ~~y~y~~i~~~~~~~~~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~   85 (404)
                      ++|.|++|+++  ..|+.|||||||+|+++|++|||+||+|+|+|+|+|+  .||+|+||++++++||.+.++||||+||
T Consensus         2 ~~Y~Y~~la~l--~~~~~vnv~gVV~~~~~p~~s~g~D~~~tl~I~D~S~--~gl~v~iF~~~~~~LP~v~~~GDII~l~   77 (140)
T d1xjva1           2 TNYIYTPLNQL--KGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN--VKLTCLLFSGNYEALPIIYKNGDIVRFH   77 (140)
T ss_dssp             CCCCCCCGGGC--CSSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC--CEEEEEEEESSGGGSCCCCSTTCEEEEE
T ss_pred             CcceEeEHHHc--cCCCEEEEEEEEeecCCCEEcCCCeEEEEEEEEeCCC--CCeEEEEECCChHHCCCCCCCCCEEEEE
Confidence            68999999998  4688999999999999999999999999999999997  4699999999999999998899999999


Q ss_pred             eEEEEEEcCeeEEEeecCceEEEEEeCCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHhhhcCc
Q 015581           86 NVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFE  149 (404)
Q Consensus        86 rvki~~~~g~~~~~~~~~~ss~~vf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~w~~~~~  149 (404)
                      |++|+.|+|+++++++.+ ++|++|+|..+.++.||++++. |+++++|+++++.||+|+++|.
T Consensus        78 r~~v~~~~~~~~~~~~~~-~ss~~F~g~~g~~~~p~~ss~~-~~~~~~d~~~~~~LR~Wa~~~~  139 (140)
T d1xjva1          78 RLKIQVYKKETQGITSSG-FASLTFEGTLGAPIIPRTSSKY-FNFTTEDHKMVEALRVWASTHM  139 (140)
T ss_dssp             EEEEEEETTEEEEEEEEE-EEEEEECCSTTCCCCCBCSCSS-CCCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEECCeEEEEecCC-EEEEEEeCCCCCcccceEcCCc-ccCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999876 5678899999999999887666 9999999999999999998764

PyMOL of d1xjva1

>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}	Back information, alignment and structure

>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1jb7a3 b.40.4.3 (A:329-495) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}	Back information, alignment and structure

>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1jb7a2 b.40.4.3 (A:205-328) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}	Back information, alignment and structure

>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jb7a2 b.40.4.3 (A:205-328) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}	Back information, alignment and structure

>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}	Back information, alignment and structure

>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure