BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015582
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 476 bits (1225), Expect = e-135, Method: Compositional matrix adjust.
Identities = 225/387 (58%), Positives = 288/387 (74%), Gaps = 9/387 (2%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK 204
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V
Sbjct: 205 DLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVK 264
Query: 193 GIFGFTGEDHIGKVSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRM 252
GIFGFT D IGK+SFP +Q A + ++CLIPCAIDQDPYFRM
Sbjct: 265 GIFGFTDSDCIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRM 319
Query: 253 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSG 312
TRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+ +AFSG
Sbjct: 320 TRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSG 379
Query: 313 GQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 372
G++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL
Sbjct: 380 GRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQ 439
Query: 373 ELVERHQVARAAVTDEMVDAFMAVRPL 399
L+ HQ R VTDE+V FM R L
Sbjct: 440 PLIAEHQARRKEVTDEIVKEFMTPRKL 466
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 476 bits (1224), Expect = e-134, Method: Compositional matrix adjust.
Identities = 225/387 (58%), Positives = 288/387 (74%), Gaps = 9/387 (2%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N
Sbjct: 4 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMN 63
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK
Sbjct: 64 QVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK 123
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V
Sbjct: 124 DLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVK 183
Query: 193 GIFGFTGEDHIGKVSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRM 252
GIFGFT D IGK+SFP +Q A + ++CLIPCAIDQDPYFRM
Sbjct: 184 GIFGFTDSDCIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRM 238
Query: 253 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSG 312
TRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+ +AFSG
Sbjct: 239 TRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSG 298
Query: 313 GQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 372
G++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL
Sbjct: 299 GRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQ 358
Query: 373 ELVERHQVARAAVTDEMVDAFMAVRPL 399
L+ HQ R VTDE+V FM R L
Sbjct: 359 PLIAEHQARRKEVTDEIVKEFMTPRKL 385
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 469 bits (1206), Expect = e-132, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 283/378 (74%), Gaps = 7/378 (1%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+ FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 144 LARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 202 HIGKVSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 261
IGK+SFP +Q A + ++CLIPCAIDQDPYFRMTRDVAPRIG
Sbjct: 181 CIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG 235
Query: 262 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHR 321
Y KPAL+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++E HR
Sbjct: 236 YPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHR 295
Query: 322 KLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVA 381
+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL L+ HQ
Sbjct: 296 QFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQAR 355
Query: 382 RAAVTDEMVDAFMAVRPL 399
R VTDE+V FM R L
Sbjct: 356 RKEVTDEIVKEFMTPRKL 373
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 469 bits (1206), Expect = e-132, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 283/378 (74%), Gaps = 7/378 (1%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+ FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 144 LARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 202 HIGKVSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 261
IGK+SFP +Q A + ++CLIPCAIDQDPYFRMTRDVAPRIG
Sbjct: 181 CIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG 235
Query: 262 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHR 321
Y KPAL+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++E HR
Sbjct: 236 YPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHR 295
Query: 322 KLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVA 381
+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL L+ HQ
Sbjct: 296 QFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQAR 355
Query: 382 RAAVTDEMVDAFMAVRPL 399
R VTDE+V FM R L
Sbjct: 356 RKEVTDEIVKEFMTPRKL 373
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 469 bits (1206), Expect = e-132, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 283/378 (74%), Gaps = 7/378 (1%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+ FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 144 LARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 202 HIGKVSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 261
IGK+SFP +Q A + ++CLIPCAIDQDPYFRMTRDVAPRIG
Sbjct: 181 CIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG 235
Query: 262 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHR 321
Y KPAL+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++E HR
Sbjct: 236 YPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHR 295
Query: 322 KLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVA 381
+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL L+ HQ
Sbjct: 296 QFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQAR 355
Query: 382 RAAVTDEMVDAFMAVRPL 399
R VTDE+V FM R L
Sbjct: 356 RKEVTDEIVKEFMTPRKL 373
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 459 bits (1182), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/387 (57%), Positives = 280/387 (72%), Gaps = 9/387 (2%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FTK+LQD F VPLVIQ TDDEK +WK
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDVFNVPLVIQXTDDEKYLWK 204
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 205 DLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK 264
Query: 193 GIFGFTGEDHIGKVSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRM 252
GIFGFT D IGK+SFP +Q A + ++CLIPCAIDQDPYFR
Sbjct: 265 GIFGFTDSDCIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRX 319
Query: 253 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSG 312
TRDVAPRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+ +AFSG
Sbjct: 320 TRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSG 379
Query: 313 GQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 372
G++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G LTGE+K+ L +VL
Sbjct: 380 GRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGELKKALIEVLQ 439
Query: 373 ELVERHQVARAAVTDEMVDAFMAVRPL 399
L+ HQ R VTDE+V F R L
Sbjct: 440 PLIAEHQARRKEVTDEIVKEFXTPRKL 466
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 459 bits (1182), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/387 (57%), Positives = 280/387 (72%), Gaps = 9/387 (2%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FTK+LQD F VPLVIQ TDDEK +WK
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDVFNVPLVIQXTDDEKYLWK 204
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 205 DLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK 264
Query: 193 GIFGFTGEDHIGKVSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRM 252
GIFGFT D IGK+SFP +Q A + ++CLIPCAIDQDPYFR
Sbjct: 265 GIFGFTDSDCIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRX 319
Query: 253 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSG 312
TRDVAPRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+ +AFSG
Sbjct: 320 TRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSG 379
Query: 313 GQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 372
G++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G LTGE+K+ L +VL
Sbjct: 380 GRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGELKKALIEVLQ 439
Query: 373 ELVERHQVARAAVTDEMVDAFMAVRPL 399
L+ HQ R VTDE+V F R L
Sbjct: 440 PLIAEHQARRKEVTDEIVKEFXTPRKL 466
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/387 (57%), Positives = 280/387 (72%), Gaps = 9/387 (2%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 38 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 97
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FTK+LQD F VPLVIQ TDDEK +WK
Sbjct: 98 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDVFNVPLVIQXTDDEKYLWK 157
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 158 DLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK 217
Query: 193 GIFGFTGEDHIGKVSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRM 252
GIFGFT D IGK+SFP +Q A + ++CLIPCAIDQDPYFR
Sbjct: 218 GIFGFTDSDCIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRX 272
Query: 253 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSG 312
TRDVAPRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+ +AFSG
Sbjct: 273 TRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSG 332
Query: 313 GQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 372
G++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G LTGE+K+ L +VL
Sbjct: 333 GRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGELKKALIEVLQ 392
Query: 373 ELVERHQVARAAVTDEMVDAFMAVRPL 399
L+ HQ R VTDE+V F R L
Sbjct: 393 PLIAEHQARRKEVTDEIVKEFXTPRKL 419
>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
pdb|3I05|B Chain B, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
Length = 395
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/382 (51%), Positives = 263/382 (68%), Gaps = 8/382 (2%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
VV+PW V G ++YDKLI FG +D++L++R++R+ G+ PH FLRRG+FF+HRDLN
Sbjct: 11 VVTPWSVE--GDVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHRDLNL 68
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
+LD YE G+ FYLYTGRGPSSE++H+GHL+PFMFTK+LQD+F+VPLVIQ+TDDEK ++N
Sbjct: 69 LLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRN 128
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
+ +E+ + + EN KDIIA GFD TFIF DFDY+ G Y+ + K+ + T ++V G F
Sbjct: 129 IPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM-GCMYRTVAKIERAFTASQVRGCF 187
Query: 196 GFTGEDHIGKVSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRD 255
GF ED+ G+ FP +Q A ++ CLIP AIDQDPYFR+TRD
Sbjct: 188 GFAMEDNCGRWMFPAIQ----AAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRD 243
Query: 256 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQE 315
+APR+GY KPA+I S FFP L G GKMS+S +A+ +TD+ +AFSGG
Sbjct: 244 IAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSS-GTAVLLTDTEKMVKDKINKHAFSGGGA 302
Query: 316 SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 375
+ + H LGAN+EVD+P+++LSFFLEDD EL +KKEY G ++TGEVK+ L +T +
Sbjct: 303 TKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAIT 362
Query: 376 ERHQVARAAVTDEMVDAFMAVR 397
+ HQ R VTDE V F + R
Sbjct: 363 KTHQEKRKLVTDEDVQLFTSTR 384
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 400 bits (1028), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/378 (51%), Positives = 260/378 (68%), Gaps = 9/378 (2%)
Query: 19 PWEVSSSGK--IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
PWEV + IDY+KLIDKFGC+ + + +++R++RLTG+ H F RR +F +HRD I
Sbjct: 6 PWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDFEKI 65
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
LD YEKGE FYLYTGRGPSSE+LH+GHLVPF+FTKYLQD FKVPLVIQLTDDEK ++K N
Sbjct: 66 LDVYEKGELFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSN 125
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L++EE+ A EN KDIIACGFD TFIF++ +Y+ Y +++++ K ++ +++ IF
Sbjct: 126 LTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA-ELYPDILRIEKKISCSQIKSIF 184
Query: 196 GFTGEDHIGKVSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRD 255
GF ++GK +FP VQ A G+ + CL+P AIDQDPYFRM RD
Sbjct: 185 GFKDSCNVGKFAFPAVQ-----AAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRD 239
Query: 256 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQE 315
VAPR+GY KP+ I S F P+LQG KMSAS NS+I+V D+ YAFSGGQ
Sbjct: 240 VAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQA 299
Query: 316 SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 375
+ E R+LGANL+VD+ +YL F +EDD +LE I K+Y +G ML+GE+K L + L +L
Sbjct: 300 TEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLT 359
Query: 376 ERHQVARAAVTDEMVDAF 393
+ HQ R A+ D+++ F
Sbjct: 360 KNHQKNREAINDDVIAKF 377
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet
pdb|3KT3|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT6|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT8|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
Length = 438
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/393 (48%), Positives = 262/393 (66%), Gaps = 15/393 (3%)
Query: 16 VVSPWEVSS-------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
VV+PW+V + IDYDKLI +FG + +++ + R +++TGR PH FLR+G+FF
Sbjct: 26 VVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFF 85
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ+ F VPLVI+LTDD
Sbjct: 86 SERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDD 145
Query: 129 EKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
EK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GGAFY+ +V+V++ +T
Sbjct: 146 EKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQIT 205
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVXXXXXXXXXXXXG-KDHLRCLIPCAIDQ 246
+ +FGF D IGK F +Q + G D CLIPCAIDQ
Sbjct: 206 GSTAKAVFGFNDSDCIGKFHFASIQ------IATAFPSSFPNVLGLPDKTPCLIPCAIDQ 259
Query: 247 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXX 306
DPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+
Sbjct: 260 DPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKIN 319
Query: 307 XYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQR 366
YAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y +G +L+GE+K+
Sbjct: 320 KYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKL 379
Query: 367 LAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
+ L E V+ Q RA V +E +D FM L
Sbjct: 380 CIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl
Trna Synthetase
Length = 432
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/393 (48%), Positives = 262/393 (66%), Gaps = 15/393 (3%)
Query: 16 VVSPWEVSS-------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
VV+PW+V + IDYDKLI +FG + +++ + R +++TGR PH FLR+G+FF
Sbjct: 26 VVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFF 85
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ+ F VPLVI+LTDD
Sbjct: 86 SERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDD 145
Query: 129 EKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
EK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GGAFY+ +V+V++ +T
Sbjct: 146 EKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQIT 205
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVXXXXXXXXXXXXG-KDHLRCLIPCAIDQ 246
+ +FGF D IGK F +Q + G D CLIPCAIDQ
Sbjct: 206 GSTAKAVFGFNDSDCIGKFHFASIQ------IATAFPSSFPNVLGLPDKTPCLIPCAIDQ 259
Query: 247 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXX 306
DPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+
Sbjct: 260 DPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKIN 319
Query: 307 XYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQR 366
YAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y +G +L+GE+K+
Sbjct: 320 KYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKL 379
Query: 367 LAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
+ L E V+ Q RA V +E +D FM L
Sbjct: 380 CIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
pdb|3TZE|B Chain B, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
Length = 406
Score = 346 bits (887), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 166/386 (43%), Positives = 251/386 (65%), Gaps = 15/386 (3%)
Query: 17 VSPW--EVSSSGK----IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAH 70
++PW EV S+ + IDYDK+I++FGC++ +Q+L DR+++L+G+P H F RRG+ FAH
Sbjct: 27 ITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAH 86
Query: 71 RDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130
RD N +LD FYLYTGRGPSS+ +H+GH +PF+ KY+QDAFK+ LVIQ+TDDEK
Sbjct: 87 RDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEK 146
Query: 131 CMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
+WK++ +E++ REN KDI+ GFD T+IFS+ + F +N++K++K + N+
Sbjct: 147 FLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVE-ASHHFEENILKISKTINLNE 205
Query: 191 VVGIFGFTGEDHIGKVSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYF 250
+ +FGF +IG+V FP + GK + CL+P A+DQDP+F
Sbjct: 206 AIKVFGFDMSSNIGQVGFPAKE-------IAPCFSSSFRFIGKGAM-CLVPAAVDQDPFF 257
Query: 251 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAF 310
R+ RD A +G KP+ I S P L+G KMSASDPNS+IY+ D+ YA+
Sbjct: 258 RLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAY 317
Query: 311 SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKV 370
SGG++++E HR+ G +++VD+P +YL +FL+DD ELE + Y G + + E+K++ V
Sbjct: 318 SGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVV 377
Query: 371 LTELVERHQVARAAVTDEMVDAFMAV 396
+ E V R+Q +R VTD+ + AF+ +
Sbjct: 378 IQEFVSRYQESRKRVTDDDLRAFIDI 403
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 270 bits (691), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 219/379 (57%), Gaps = 23/379 (6%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV G +DYDKLI FG L + L+++ LT +F RR FF+HRD + I
Sbjct: 7 VTPWEVE--GVVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLI 64
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE+G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K N
Sbjct: 65 LKDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKEN 123
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ ++++R A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++ +F
Sbjct: 124 LTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVF 181
Query: 196 GFTGEDHIGKVSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRD 255
GFT + IG + FP +Q + RCLIP AIDQDPY+R+ RD
Sbjct: 182 GFTEQSKIGMIFFPAIQ---------------IAPTFFERKRCLIPAAIDQDPYWRLQRD 226
Query: 256 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQE 315
A +GY+K A + S F P+L +GKMSAS P +AIY+TDS + +GG+
Sbjct: 227 FAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRP 286
Query: 316 SVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 374
+++ R+ G E + K+L FF EDD +L+ G + GE K+ L + E
Sbjct: 287 TLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEF 346
Query: 375 VERHQVARAAVTDEMVDAF 393
++ HQ R +++V+ F
Sbjct: 347 LKEHQRRRKKA-EKLVEKF 364
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 261 bits (668), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 220/413 (53%), Gaps = 47/413 (11%)
Query: 33 LIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92
+I +FG + L+ R + +TG H LRRG+F+AHRD + L YEKG Y+YTGR
Sbjct: 39 IITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGR 98
Query: 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW-KNLSVEE----------- 140
GPSS ALHLGHL+PF+FTKYLQDAFK +VIQ+TDDEK + ++LS E
Sbjct: 99 GPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKD 158
Query: 141 ----------------SQRLARENAKDIIACGFD-------VTKTFIFSDFDYVGGAFY- 176
SQ L+ +N + +C D + +F FS+ VG A +
Sbjct: 159 IIACGFDPDKTFIFINSQYLSLKN-RYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFP 217
Query: 177 -KNMVKVAKC----VTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVXXXXXXXXXXXX 231
K M+ V + + +V G ED VS + K
Sbjct: 218 PKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEEL 277
Query: 232 GKDHLR-----CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSAS 286
D R CLI I+QDPYFR+ RD+APR+G+ K A + F P LQG KMSAS
Sbjct: 278 FPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSAS 337
Query: 287 DPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL 346
DPNSAIY+TD+ YAFSGG+++ E HR GA+L VD+ V+YL F++DDAEL
Sbjct: 338 DPNSAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAEL 397
Query: 347 EHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
E +K +Y G +LTGEVK L +L L++ H R V M+++F + L
Sbjct: 398 EKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDTTMIESFTVKKEL 450
>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|B Chain B, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|C Chain C, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|D Chain D, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|E Chain E, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|F Chain F, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
Length = 386
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 191/367 (52%), Gaps = 10/367 (2%)
Query: 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88
DY++LI+ G + + R+++L+G+ PH +L RGVF A + L+ LD E + ++
Sbjct: 26 DYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFI 85
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAREN 148
+ + P E + L + F +YLQDAF + ++IQ+ DD K + + ++ E+ +++ +
Sbjct: 86 FIQKYPQKE-VALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDL 144
Query: 149 AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSF 208
K I+A GF+ KTFI++D+ Y G Y+ + V K YN V F F D+IGK++
Sbjct: 145 MKYILAFGFNEDKTFIYTDYQYFGK-MYRTISLVEKATAYNVVQPFFNFEYSDNIGKLAS 203
Query: 209 PPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALI 268
P + + RCL+ +I + + +A + + +P ++
Sbjct: 204 PSI-------MTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVL 256
Query: 269 ESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLE 328
P L G T SD NS I ++D+ AFSGG+ + E H+KLG +
Sbjct: 257 FHKMVPLLSGVTKFDIPSDHNS-ILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCD 315
Query: 329 VDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE 388
+D+ + L+ F D+A+++ ++++Y G +L+GE+K+ ++ + + + + + +T
Sbjct: 316 IDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTA 375
Query: 389 MVDAFMA 395
+ A+++
Sbjct: 376 YLKAYIS 382
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 124 bits (311), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 106/360 (29%), Positives = 164/360 (45%), Gaps = 31/360 (8%)
Query: 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88
DYD+L+ FG + + L + R G P +RRG+ F HRD + IL+A +GE+ +
Sbjct: 16 DYDRLLRTFGIRPFSEVLP--LLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAV 73
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQ-DAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-R 146
TG PS + H GH + YLQ + FKV + + D E + + EE+ R+A
Sbjct: 74 LTGFMPSGK-FHFGHKLTVDQLIYLQKNGFKV--FVAIADAEAFAVRRIGREEAVRIAVE 130
Query: 147 ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGK 205
E ++IA G D T + F G Y ++++ + VT ++ I+G
Sbjct: 131 EYIANMIALGLDPKDTEFY--FQTNRGTPYFRLIQLFSGKVTAAEMEAIYG--------- 179
Query: 206 VSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG---- 261
P + M G + ++P DQDP+ R+TRD+A R+
Sbjct: 180 -ELTPAKMMASLTQAADILHVQLDEYG-GYRHVVVPVGADQDPHLRLTRDLADRMAGVVE 237
Query: 262 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHR 321
+PA P L G KMS+S P+S I++TD A +GG+ + E R
Sbjct: 238 LERPASTYHKLQPGLDGR--KMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQR 294
Query: 322 KLGANLEVDIPVKYLSFF--LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 379
+LG EV V ++ + + DD E++HI G +L GE KQ + L + HQ
Sbjct: 295 RLGGVPEV-CSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQ 353
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 23/213 (10%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVE 139
E EK Y G PS E +HLGH++ LQ+A F++ ++ L D + + + E
Sbjct: 28 ETKEKPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEI--IVLLADIHAYLNEKGTFE 84
Query: 140 ESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT 198
E +A N K IA G D ++ F+ + + +++K+A+ T N+
Sbjct: 85 EIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNR-----ARR 139
Query: 199 GEDHIGKVSFPP-VQEMIYKAVXXXXXXXXXXXXGKDHLRC-LIPCAIDQDPYFRMTRDV 256
D + + P V +MIY + HL L IDQ + R+
Sbjct: 140 SMDEVSRRKEDPMVSQMIYPLMQALDIA---------HLGVDLAVGGIDQRKIHMLAREN 190
Query: 257 APRIGYHKPALIESSFFPALQGETGKMSASDPN 289
PR+GY P + + L G+ KMS+S N
Sbjct: 191 LPRLGYSSPVCLHTPILVGLDGQ--KMSSSKGN 221
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-239629
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-243545
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
Length = 420
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ + Q+ P+V+
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70
>pdb|2DLC|X Chain X, Crystal Structure Of The Ternary Complex Of Yeast
Tyrosyl-Trna Synthetase
Length = 394
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 243 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 292
+DQ F + + P +GY K A + + P L + GKMSASDPNS I
Sbjct: 189 GVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGL-AQGGKMSASDPNSKI 237
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 26/156 (16%)
Query: 244 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------------ETGKMSASDP 288
+DQ + RDVA ++G KP I + +LQG KMS S P
Sbjct: 185 MDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244
Query: 289 NSAIYVTDSXXXXXXXXXXYAFSG----GQESVELHRKL-----GANLEVDIPVKYLSFF 339
+A++V DS G +E+ R + G L VD P KY
Sbjct: 245 ETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPV 304
Query: 340 LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 375
+ E ++++Y G + ++K +A+ L E+V
Sbjct: 305 --EYTSYEELERDYTDGRLHPLDLKNAVAESLIEVV 338
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 239 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 295
++P DQ + +TRD+A R + E+ +L T KMS SDPN Y+T
Sbjct: 128 IVPVGEDQKQHIELTRDLAERFNKRYFTIPEARRIMSLVDPTKKMSKSDPNPKAYIT 184
>pdb|2JAN|A Chain A, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|B Chain B, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|C Chain C, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|D Chain D, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
Length = 432
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ DL+ + ++G +Y G P++ +LH GHLVP + + Q A P+V+
Sbjct: 12 RGLIAQSTDLDTLAAEAQRG-PMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVL 70
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
LY G P++++LHLGHLVP + K Q A P+ +
Sbjct: 36 LYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 71
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
LY G P++++LHLGHLVP + K Q A P+ +
Sbjct: 32 LYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 67
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 119/316 (37%), Gaps = 49/316 (15%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAR 146
+ TG P+ ALHLGHL + + LQD ++ L D + + + E R
Sbjct: 25 VLTGDRPTG-ALHLGHLAGSLQNRVRLQDEAEL---FVLLADVQALTDHFDRPEQ---VR 77
Query: 147 EN----AKDIIACGFDVTKT--FIFSDFDYVG--GAFYKNMVKVA---KCVTYNKVVGIF 195
EN A D +A G D KT + S + ++ N+V V+ + T +
Sbjct: 78 ENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQK 137
Query: 196 GFTGEDHIGKVSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRD 255
G+ G +P Q A L+P DQ P TR+
Sbjct: 138 GYGERVPAGFFVYPVSQAADIAAFGA----------------TLVPVGDDQLPMLEQTRE 181
Query: 256 VAPRI-GYHKPALIES----SFFPALQGETG--KMSASDPNSAIYVTDSXXXXXXXXXXY 308
+ R + P L E S P L G G KMS S N AI + DS
Sbjct: 182 IVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGN-AIALGDSADEVARKVMGM 240
Query: 309 AFSGGQESVELHRKLGANLEVDIPV-KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRL 367
G ++ N PV +L F D A ++ +K +Y AGG+ +VK+ L
Sbjct: 241 YTDPGHLRASDPGRVEGN-----PVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHL 295
Query: 368 AKVLTELVERHQVARA 383
VL ++ + RA
Sbjct: 296 IDVLNGVLAPIRTRRA 311
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 119/316 (37%), Gaps = 49/316 (15%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAR 146
+ TG P+ ALHLGHL + + LQD ++ L D + + + E R
Sbjct: 5 VLTGDRPTG-ALHLGHLAGSLQNRVRLQDEAEL---FVLLADVQALTDHFDRPEQ---VR 57
Query: 147 EN----AKDIIACGFDVTKT--FIFSDFDYVG--GAFYKNMVKVA---KCVTYNKVVGIF 195
EN A D +A G D KT + S + ++ N+V V+ + T +
Sbjct: 58 ENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQK 117
Query: 196 GFTGEDHIGKVSFPPVQEMIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRD 255
G+ G +P Q A L+P DQ P TR+
Sbjct: 118 GYGERVPAGFFVYPVSQAADIAAFGA----------------TLVPVGDDQLPMLEQTRE 161
Query: 256 VAPRI-GYHKPALIES----SFFPALQGETG--KMSASDPNSAIYVTDSXXXXXXXXXXY 308
+ R + P L E S P L G G KMS S N AI + DS
Sbjct: 162 IVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGN-AIALGDSADEVARKVMGM 220
Query: 309 AFSGGQESVELHRKLGANLEVDIPV-KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRL 367
G ++ N PV +L F D A ++ +K +Y AGG+ +VK+ L
Sbjct: 221 YTDPGHLRASDPGRVEGN-----PVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHL 275
Query: 368 AKVLTELVERHQVARA 383
VL ++ + RA
Sbjct: 276 IDVLNGVLAPIRTRRA 291
>pdb|1TYC|A Chain A, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL P + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAPILTMRRFQQAGHRPIAL 68
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 34/157 (21%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 202 HIGKVSFPPVQE---MIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAP 258
G +++PP+ ++Y ++P DQ + +TRD+A
Sbjct: 104 SAGLLTYPPLMAADILLYNT-------------------DIVPVGEDQKQHIELTRDLAE 144
Query: 259 RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 295
R ++K +L T KMS SDPN Y+T
Sbjct: 145 R--FNKRYFTIPERIMSLVDPTKKMSKSDPNPKAYIT 179
>pdb|1VBN|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
pdb|1VBN|B Chain B, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
Length = 318
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
L G P++++LHLGHLVP + K Q A P+ +
Sbjct: 32 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 67
>pdb|1WQ3|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Comlexed
With 3-Iodo- L-Tyrosine
pdb|2YXN|A Chain A, Structual Basis Of Azido-Tyrosine Recognition By
Engineered Bacterial Tyrosyl-Trna Synthetase
Length = 322
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
L G P++++LHLGHLVP + K Q A P+ +
Sbjct: 36 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 71
>pdb|1WQ4|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With L- Tyrosine
Length = 321
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
L G P++++LHLGHLVP + K Q A P+ +
Sbjct: 35 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 70
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 34/159 (21%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 55 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 108
Query: 202 HIGKVSFPPVQE---MIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAP 258
G +++PP+ ++Y ++P DQ + +TRD+A
Sbjct: 109 SAGLLTYPPLMAADILLYNT-------------------DIVPVGEDQKQHIELTRDLAE 149
Query: 259 RIGYHKPALIES--SFFPALQGETGKMSASDPNSAIYVT 295
R A I + +L T KMS SDPN Y+T
Sbjct: 150 RFFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 188
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 38/163 (23%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 202 HIGKVSFPPVQE---MIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAP 258
G +++PP+ ++Y ++P DQ + +TRD+A
Sbjct: 104 SAGLLTYPPLMAADILLYNT-------------------DIVPVGEDQKQHIELTRDLAE 144
Query: 259 RIGYHKPALIESSF------FPALQGETGKMSASDPNSAIYVT 295
R + E+ +L T KMS SDPN Y+T
Sbjct: 145 RFNKRYFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 38/163 (23%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 202 HIGKVSFPPVQE---MIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAP 258
G +++PP+ ++Y ++P DQ + +TRD+A
Sbjct: 104 SAGLLTYPPLMAADILLYNT-------------------DIVPVGEDQKQHIELTRDLAE 144
Query: 259 RIGYHKPALIESSF------FPALQGETGKMSASDPNSAIYVT 295
R + E+ +L T KMS SDPN Y+T
Sbjct: 145 RFNKRYFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 38/163 (23%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 202 HIGKVSFPPVQE---MIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAP 258
G +++PP+ ++Y ++P DQ + +TRD+A
Sbjct: 104 SAGLLTYPPLMAADILLYNT-------------------DIVPVGEDQKQHIELTRDLAE 144
Query: 259 RIGYHKPALIESSF------FPALQGETGKMSASDPNSAIYVT 295
R + E+ +L T KMS SDPN Y+T
Sbjct: 145 RFNKRYFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 239 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 289
++P DQ + +TRD+A R Y + I + P +L T KMS SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPN 199
Query: 290 SAIYVT 295
Y+T
Sbjct: 200 PKAYIT 205
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 239 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 289
++P DQ + +TRD+A R Y + I + P +L T KMS SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPN 199
Query: 290 SAIYVT 295
Y+T
Sbjct: 200 PKAYIT 205
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 244 IDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDS 297
+DQ + R+ IG KP ++ L+ KMS SDP+SAI++ D+
Sbjct: 191 LDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDT 245
>pdb|1TYD|E Chain E, Structure Of Tyrosyl-Trna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 319
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLASILTMRRFQQAGHRPIAL 68
>pdb|1TYA|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAAILTMRRFQQAGHRPIAL 68
>pdb|2TS1|A Chain A, Structure Of Tyrosyl-TRNA SYNTHETASE REFINED AT 2.3
ANGSTROMS Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
pdb|3TS1|A Chain A, Structure Of Tyrosyl-t/rna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 419
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIAL 68
>pdb|4TS1|A Chain A, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
pdb|4TS1|B Chain B, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
Length = 319
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIAL 68
>pdb|1TYB|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAGILTMRRFQQAGHRPIAL 68
>pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution.
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
Length = 814
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 141 SQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-----AFYKNMVKVAKCVT 187
+Q+L NAK+I A D +TF++ D D + A Y+ + +AK +T
Sbjct: 110 NQKLDETNAKNIEAIKLDSNRTFLWKDLDNLNNSAQLTATYRRLEDLAKQIT 161
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 27/228 (11%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTD--DEKCMWKNLS 137
+ G F Y G PS +H+ L+ M T + + ++I + D + + N
Sbjct: 36 DSGRIFTAYNGFEPSGR-IHIAQALITVMNTNNMIECGG-QMIIYIADWFAKMNLKMNGD 93
Query: 138 VEESQRLARENAKDIIACGFDVTKT-FIF-SDFDYVGGAFYKNMVKVAKCVTYNKV---V 192
+ + + L R + ACG ++ T FI+ S+F ++ + M+ +A+ T ++V
Sbjct: 94 INKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCC 153
Query: 193 GIFGFTGEDHI--GKVSFPPVQEM-IYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPY 249
I G D + ++ +P +Q +++ V G D + IDQ
Sbjct: 154 QIMGRNESDCLKASQIFYPCMQAADVFELVPE----------GID----ICQLGIDQRKV 199
Query: 250 FRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 297
+ + A G P + +L G KMS SDP AI++ D+
Sbjct: 200 NMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT 247
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
Length = 328
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 239 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 289
++P DQ + +TRD+A R Y + I + P +L T K S SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPN 199
Query: 290 SAIYVT 295
Y+T
Sbjct: 200 PKAYIT 205
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
Length = 326
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 239 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 289
++P DQ + +TRD+A R Y + I + P +L T K S SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPN 199
Query: 290 SAIYVT 295
Y+T
Sbjct: 200 PKAYIT 205
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 58/229 (25%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM-----WKNLS----- 137
+ +G P+ + LH+GHLV A + + +Q +E C W L+
Sbjct: 15 ILSGMRPTGK-LHIGHLV---------GALENWVKLQEEGNE-CFYFVADWHALTTHYDD 63
Query: 138 VEESQRLARENAKDIIACGFDVTKTFIFSDF---DYVGGAFYKNMV----KVAKCVTYNK 190
V + + R+ + +ACG D K+ IF ++ A +M+ ++ + TY +
Sbjct: 64 VSKLKEYTRDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKE 123
Query: 191 VVGIFGFTGEDHIGKVSFPPVQE---MIYKAVXXXXXXXXXXXXGKDHLRCLIPCAIDQD 247
+ + G + +P +Q +IYKA +P DQ
Sbjct: 124 IKSELNYKDLSTAGFLIYPVLQAADILIYKAEG-------------------VPVGEDQV 164
Query: 248 PYFRMTRDVAPRIGY------HKPALIESSFFPALQGETG-KMSASDPN 289
+ +TR++A R Y +P I S P L G G KMS S N
Sbjct: 165 YHIELTREIARRFNYLYDEVFPEPEAILSR-VPKLPGTDGRKMSKSYGN 212
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
Length = 388
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 239 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 289
L+P DQ + +TR++A R Y+ I P +L KMS SDPN
Sbjct: 174 LVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPN 233
Query: 290 SAIYVT 295
Y+T
Sbjct: 234 QKAYIT 239
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 265 PALIESSFFPALQGETGKMSASDPNSAIYVTDS 297
P ++ P L KMS SD NSAI++ DS
Sbjct: 230 PVILSHGMLPGLLEGQEKMSKSDENSAIFMDDS 262
>pdb|1Y42|X Chain X, Crystal Structure Of A C-Terminally Truncated Cyt-18
Protein
pdb|2RKJ|A Chain A, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|B Chain B, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|E Chain E, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|F Chain F, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|I Chain I, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|J Chain J, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|M Chain M, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|N Chain N, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
Length = 392
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 89 YTGRGPSSEALHLGHLVPFM--FTKYLQ 114
Y G P++ +LH+GHL+P M F YL+
Sbjct: 68 YVGIDPTAPSLHVGHLLPLMPLFWMYLE 95
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 354 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 387
G G ++T E+ + AK+L+E +ER V+ A VT+
Sbjct: 129 GKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN 162
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 244 IDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDS 297
+DQ + R+ IG KP ++ L+ K S SDP+SAI+ D+
Sbjct: 191 LDQRKVNXLAREYCDLIGRKLKPVILSHHXLAGLKQGQAKXSKSDPDSAIFXEDT 245
>pdb|3IZB|A Chain A, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|A Chain A, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|A Chain A, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|A Chain A, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|A Chain A, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 252
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
KF +TG P + G P FT Y+ +FK P ++ +TD
Sbjct: 88 KFAAHTGATPIA-----GRFTPGSFTNYITRSFKEPRLVIVTD 125
>pdb|2Y50|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum At 2.80 Angstrom Resolution
pdb|2Y6I|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum In Complex With
Isoamylphosphonyl-Gly-Pro-Ala At 3.25 Angstrom
Resolution
Length = 785
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 167 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT 198
DF+Y+ G Y + + K + +N++ G+F ++
Sbjct: 25 DFEYLNGLSYTELTNLIKNIKWNQINGLFNYS 56
>pdb|1S1H|B Chain B, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 185
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
KF +TG P + G P FT Y+ +FK P ++ +TD
Sbjct: 75 KFAAHTGATPIA-----GRFTPGSFTNYITRSFKEPRLVIVTD 112
>pdb|2Y3U|A Chain A, Crystal Structure Of Apo Collagenase G From Clostridium
Histolyticum At 2.55 Angstrom Resolution
Length = 785
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 167 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT 198
DF+Y+ G Y + + K + +N++ G+F ++
Sbjct: 25 DFEYLNGLSYTELTNLIKNIKWNQINGLFNYS 56
>pdb|3JYV|B Chain B, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 193
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
KF +TG P + G P FT Y+ +FK P ++ +TD
Sbjct: 80 KFAAHTGATPIA-----GRFTPGSFTNYITRSFKEPRLVIVTD 117
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 321 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH-- 378
R+LGA+ + +P Y+ E + + + AG GE+ A+V+TE+V
Sbjct: 25 RELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFD 84
Query: 379 ------QVARAAVTDEMVDAFMAVR 397
+ A VT ++ A +AVR
Sbjct: 85 KVPAAIEGCDAVVTTGLLPAAVAVR 109
>pdb|1PN3|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PN3|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PNV|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
pdb|1PNV|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
Length = 404
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 321 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH-- 378
R+LGA+ + +P Y+ E + + + AG GE+ A+V+TE+V
Sbjct: 25 RELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFD 84
Query: 379 ------QVARAAVTDEMVDAFMAVR 397
+ A VT ++ A +AVR
Sbjct: 85 KVPAAIEGCDAVVTTGLLPAAVAVR 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,130,379
Number of Sequences: 62578
Number of extensions: 441136
Number of successful extensions: 1237
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1141
Number of HSP's gapped (non-prelim): 68
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)