BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015582
(404 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2
SV=2
Length = 472
Score = 518 bits (1334), Expect = e-146, Method: Compositional matrix adjust.
Identities = 241/393 (61%), Positives = 307/393 (78%), Gaps = 9/393 (2%)
Query: 11 EEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF
Sbjct: 80 EAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHRFLRRGIFF 139
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDD
Sbjct: 140 SHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDD 199
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCV 186
EK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K V
Sbjct: 200 EKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHV 259
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 246
T+N+V GIFGFT D IGK+SFP +Q A PSF +SFP +F + ++CLIPCAIDQ
Sbjct: 260 TFNQVKGIFGFTDSDCIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDIQCLIPCAIDQ 314
Query: 247 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 306
DPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK K+N
Sbjct: 315 DPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVN 374
Query: 307 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQR 366
K+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+
Sbjct: 375 KHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKA 434
Query: 367 LAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
L +VL L+ HQ R VTDE+V FM R L
Sbjct: 435 LIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 467
>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus
GN=WARS PE=2 SV=3
Length = 475
Score = 518 bits (1333), Expect = e-146, Method: Compositional matrix adjust.
Identities = 244/402 (60%), Positives = 312/402 (77%), Gaps = 9/402 (2%)
Query: 2 DKNEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPH 59
D + + + +++E V PW V SS+ IDYDKLI +FG ++D+ LV+R++R TG+ PH
Sbjct: 74 DSHGDPEAVDDKEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELVNRIERATGQRPH 133
Query: 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKV 119
FLRRG+FF+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F V
Sbjct: 134 RFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFDV 193
Query: 120 PLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FYK 177
PLV+Q++DDEK +WK+L++E+ ENAKDIIACGFDV KTFIFSD DY+G + FYK
Sbjct: 194 PLVVQMSDDEKYLWKDLTLEQVYGYTLENAKDIIACGFDVNKTFIFSDLDYMGMSPGFYK 253
Query: 178 NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLR 237
N+VK+ K VT+N+V GIFGFT D IGK+SFP +Q A PSF +SFP +F G+ ++
Sbjct: 254 NVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQ-----AAPSFSNSFPQIFHGQADIQ 308
Query: 238 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 297
CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+
Sbjct: 309 CLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDT 368
Query: 298 AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGG 357
AK IK K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G
Sbjct: 369 AKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYSSGA 428
Query: 358 MLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
MLTGE+K+ L VL LV HQ R VTDEMV FM R L
Sbjct: 429 MLTGELKKELIDVLQPLVAEHQARRKEVTDEMVKEFMTPRQL 470
>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1
SV=2
Length = 471
Score = 518 bits (1333), Expect = e-146, Method: Compositional matrix adjust.
Identities = 241/393 (61%), Positives = 307/393 (78%), Gaps = 9/393 (2%)
Query: 11 EEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF
Sbjct: 79 EAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFF 138
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDD
Sbjct: 139 SHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDD 198
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCV 186
EK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K V
Sbjct: 199 EKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHV 258
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 246
T+N+V GIFGFT D IGK+SFP +Q A PSF +SFP +F + ++CLIPCAIDQ
Sbjct: 259 TFNQVKGIFGFTDSDCIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDIQCLIPCAIDQ 313
Query: 247 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 306
DPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK K+N
Sbjct: 314 DPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVN 373
Query: 307 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQR 366
K+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+
Sbjct: 374 KHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKA 433
Query: 367 LAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
L +VL L+ HQ R VTDE+V FM R L
Sbjct: 434 LIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466
>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars
PE=1 SV=2
Length = 481
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/400 (61%), Positives = 309/400 (77%), Gaps = 9/400 (2%)
Query: 4 NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
N + + E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH F
Sbjct: 76 NGDPDATKASEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELINRIERATGQRPHRF 135
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
LRRG+FF+HRD+N ILDAYE + FYLYTGRGPSSEA+HLGHLVPF+FTK+LQD F VPL
Sbjct: 136 LRRGIFFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHLGHLVPFIFTKWLQDVFDVPL 195
Query: 122 VIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FYKNM 179
VIQ++DDEK +WK+L++E++ ENAKDIIACGFDV KTFIFSD +Y+G + FYKN+
Sbjct: 196 VIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDVNKTFIFSDLEYMGQSPGFYKNV 255
Query: 180 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCL 239
VK+ K VT+N+V GIFGFT D IGK+SFP VQ A PSF +SFP +F + ++CL
Sbjct: 256 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQ-----AAPSFSNSFPKIFRDRTDIQCL 310
Query: 240 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 299
IPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK
Sbjct: 311 IPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAK 370
Query: 300 AIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGML 359
IK+K+NK+AFSGG+++VE HR+ G N EVD+ YL+FFLEDD LE I+K+Y +G ML
Sbjct: 371 QIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIRKDYTSGAML 430
Query: 360 TGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
TGE+K+ L VL L+ HQ R AVT+E V FMA R L
Sbjct: 431 TGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQL 470
>sp|P17248|SYWC_BOVIN Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus GN=WARS PE=1
SV=3
Length = 476
Score = 513 bits (1320), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/393 (61%), Positives = 308/393 (78%), Gaps = 9/393 (2%)
Query: 11 EEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
E E V PW V SS+ IDYDKLI +FG ++D+ LV+R++R TG+ PH FLRRG+FF
Sbjct: 84 EADEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELVNRIERATGQRPHRFLRRGIFF 143
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+HRD++ ILDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDD
Sbjct: 144 SHRDMHQILDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDD 203
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FYKNMVKVAKCV 186
EK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G + FYKN+VK+ K V
Sbjct: 204 EKYLWKDLTLDQAYGYAVENAKDIIACGFDINKTFIFSDLDYMGMSPGFYKNVVKIQKHV 263
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 246
T+N+V GIFGFT D IGK+SFP +Q A PSF +SFP +F + ++CLIPCAIDQ
Sbjct: 264 TFNQVKGIFGFTDSDCIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDVQCLIPCAIDQ 318
Query: 247 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 306
DPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK K+N
Sbjct: 319 DPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVN 378
Query: 307 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQR 366
K+AFSGG+++VE HR+ G N +VD+ YL+FFLEDD +LE I+++Y +G MLTGE+K+
Sbjct: 379 KHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRRDYTSGAMLTGELKKE 438
Query: 367 LAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
L +VL L+ HQ R VTDE+V FM R L
Sbjct: 439 LIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 471
>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1
SV=2
Length = 481
Score = 513 bits (1320), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/401 (60%), Positives = 309/401 (77%), Gaps = 9/401 (2%)
Query: 3 KNEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHV 60
+N + + E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH
Sbjct: 75 RNCDSDATKASEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELINRIERATGQRPHR 134
Query: 61 FLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVP 120
FLRRG+FF+HRD+N ILDAYE + FYLYTGRGPSSEA+HLGHLVPF+FTK+LQD F VP
Sbjct: 135 FLRRGIFFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHLGHLVPFIFTKWLQDVFNVP 194
Query: 121 LVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FYKN 178
LVIQ++DDEK +WK+L++E++ ENAKDIIACGFD+ KTFIFSD +Y+G + FY+N
Sbjct: 195 LVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDINKTFIFSDLEYMGQSPGFYRN 254
Query: 179 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRC 238
+VK+ K VT+N+V GIFGFT D IGK+SFP VQ A PSF +SFP +F + ++C
Sbjct: 255 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQ-----AAPSFSNSFPKIFRDRTDIQC 309
Query: 239 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 298
LIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG KMSASDPNS+I++TD+A
Sbjct: 310 LIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTA 369
Query: 299 KAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGM 358
K IK+K+NK+AFSGG+++VE HR+ G N EVD+ YL+FFLEDD LE I+K+Y +G M
Sbjct: 370 KQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQIRKDYTSGAM 429
Query: 359 LTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
LTGE+K+ L VL L+ HQ R AVT+E V FM R L
Sbjct: 430 LTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMTPRQL 470
>sp|Q55DZ8|SYWC_DICDI Tryptophan--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=trpS PE=3 SV=1
Length = 400
Score = 462 bits (1189), Expect = e-129, Method: Compositional matrix adjust.
Identities = 215/391 (54%), Positives = 289/391 (73%), Gaps = 12/391 (3%)
Query: 15 QVVSPWEVSSS--GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72
QV++PWEV ++ G +DY KL+D+FG + + L+ R +++TG+ H FLRRG+FF+HRD
Sbjct: 14 QVITPWEVEAAPGGSVDYMKLVDQFGSTVISEELIARFEKVTGKRAHHFLRRGIFFSHRD 73
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
L +ILD +E G+K++LYTGRGPSS +LH GHL+PF FTKYLQDAF VPLV+Q+T+DEK +
Sbjct: 74 LKEILDHHESGKKWFLYTGRGPSSGSLHFGHLLPFTFTKYLQDAFNVPLVVQMTNDEKFL 133
Query: 133 WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
WK++++EES + N KDIIA GFD+ KTFIFS+ +Y+ Y N++K+A+CV N++
Sbjct: 134 WKDMTLEESIKFTHNNVKDIIALGFDIQKTFIFSNLEYIH-HLYPNVLKIARCVNLNQIQ 192
Query: 193 GIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKD----HLRCLIPCAIDQDP 248
IFGF D IGK +FPPVQ A P FP SFPH+F D ++RCLIPCAIDQDP
Sbjct: 193 NIFGFKESDAIGKFTFPPVQ-----AAPCFPDSFPHIFPLNDPEIKNIRCLIPCAIDQDP 247
Query: 249 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKY 308
YFRMTRD+A RIG+ KPALI S FFPALQG KMSASD NSA+Y++D+ +K+KI K+
Sbjct: 248 YFRMTRDIAHRIGHQKPALIHSKFFPALQGHNTKMSASDTNSAVYLSDTPDQVKDKIKKH 307
Query: 309 AFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLA 368
AFSGG + E K GA+L VDI +YL+F LEDD +L+ I Y G M+TGE+KQ L
Sbjct: 308 AFSGGGATKEEQEKNGADLSVDITYEYLTFMLEDDEQLKDIAHRYSTGKMMTGEIKQILI 367
Query: 369 KVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
++ +++ RH+ ARA +TDE++ FM++R L
Sbjct: 368 DLMNKIIIRHKEARAKITDEVLSTFMSIRKL 398
>sp|Q09692|SYWC_SCHPO Tryptophan--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wrs1 PE=1 SV=1
Length = 395
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/388 (54%), Positives = 285/388 (73%), Gaps = 12/388 (3%)
Query: 14 EQVVSPWEVSSS------GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVF 67
EQ+V+PW+V S IDY++LI +FG +++ ++R ++LTG+ PH+ LRRG F
Sbjct: 5 EQIVTPWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLRRGAF 64
Query: 68 FAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
F+HRD + ILD YE+ + FYLYTGRGPSS+++HLGH++PFMF K+LQD F+VPLVIQLTD
Sbjct: 65 FSHRDFDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKWLQDVFQVPLVIQLTD 124
Query: 128 DEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV 186
DEK ++K +S+E+ QR ARENAKDIIA GFD KTFIF + YVGGAFY+N+V++AKC+
Sbjct: 125 DEKFLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFMNSTYVGGAFYQNVVRIAKCI 184
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 246
T N+ FGFT D IGK+ F +Q A PSF SSFPH+F+G + CLIPCAIDQ
Sbjct: 185 TANQSKACFGFTDSDSIGKIHFASIQ-----AAPSFSSSFPHIFNGAKDIPCLIPCAIDQ 239
Query: 247 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 306
DPYFR+TRDV+ R+ + KPAL+ S FFPALQG KMSAS +SAI++TD+ IKNKIN
Sbjct: 240 DPYFRLTRDVSGRLKFKKPALLHSRFFPALQGPQSKMSASKDSSAIFMTDTPNKIKNKIN 299
Query: 307 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQR 366
++AFSGG ++E+HR+ G N +VD+ +YLSFFL+DD +L+ + Y AG + TGE+K
Sbjct: 300 RHAFSGGGATIEIHREKGGNPDVDVAYQYLSFFLDDDEKLKQLYNTYKAGTLSTGEMKGE 359
Query: 367 LAKVLTELVERHQVARAAVTDEMVDAFM 394
K+L + V Q AR+ V + +D FM
Sbjct: 360 CIKLLQQFVSDFQAARSKVDEATLDMFM 387
>sp|Q12109|SYWC_YEAST Tryptophan--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=WRS1 PE=1 SV=1
Length = 432
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/395 (51%), Positives = 279/395 (70%), Gaps = 13/395 (3%)
Query: 13 REQVVSPWEVSS-------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRG 65
+EQVV+PW+V + IDYDKLI +FG + +++ + R +++TGR PH FLR+G
Sbjct: 23 KEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKG 82
Query: 66 VFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQL 125
+FF+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ+ F VPLVI+L
Sbjct: 83 LFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIEL 142
Query: 126 TDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAK 184
TDDEK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GGAFY+ +V+V++
Sbjct: 143 TDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSR 202
Query: 185 CVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAI 244
+T + +FGF D IGK F +Q +FPSSFP++ D CLIPCAI
Sbjct: 203 QITGSTAKAVFGFNDSDCIGKFHFASIQ-----IATAFPSSFPNVLGLPDKTPCLIPCAI 257
Query: 245 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 304
DQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+ K I+ K
Sbjct: 258 DQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKK 317
Query: 305 INKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVK 364
INKYAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y +G +L+GE+K
Sbjct: 318 INKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMK 377
Query: 365 QRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
+ + L E V+ Q RA V +E +D FM L
Sbjct: 378 KLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>sp|O96771|SYW_ENCCU Tryptophan--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU11_0530 PE=1 SV=2
Length = 385
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/389 (45%), Positives = 264/389 (67%), Gaps = 15/389 (3%)
Query: 14 EQVVSPW--EVSSSGK----IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVF 67
EQ ++PW EV S+ + IDYDK+I++FGC++ +Q+L DR+++L+G+P H F RRG+
Sbjct: 3 EQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIV 62
Query: 68 FAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
FAHRD N +LD FYLYTGRGPSS+ +H+GH +PF+ KY+QDAFK+ LVIQ+TD
Sbjct: 63 FAHRDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITD 122
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
DEK +WK++ +E++ REN KDI+A GFD T+IFS+ + F +N++K++K +
Sbjct: 123 DEKFLWKSMRLEDAMAYGRENIKDIVALGFDPKLTYIFSNVE-ASHHFEENILKISKTIN 181
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQD 247
N+ + +FGF +IG+V FP + P F SSF F GK + CL+P A+DQD
Sbjct: 182 LNEAIKVFGFDMSSNIGQVGFPAKE-----IAPCFSSSFR--FIGKGAM-CLVPAAVDQD 233
Query: 248 PYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
P+FR+ RD A +G KP+ I S P L+G KMSASDPNS+IY+ D+ I+ KI
Sbjct: 234 PFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIA 293
Query: 308 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRL 367
YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE + Y G + + E+K++
Sbjct: 294 YAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKC 353
Query: 368 AKVLTELVERHQVARAAVTDEMVDAFMAV 396
V+ E V R+Q +R VTD+ + AF+ +
Sbjct: 354 VVVIQEFVSRYQESRKRVTDDDLRAFIDI 382
>sp|Q4JBG7|SYW_SULAC Tryptophan--tRNA ligase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=trpS PE=3 SV=1
Length = 381
Score = 335 bits (860), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 176/381 (46%), Positives = 244/381 (64%), Gaps = 24/381 (6%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
V+PWEV GK+DYDKLI +FG Q++ L +R +R HV LRR VFF+HRD +
Sbjct: 6 TVTPWEVK--GKVDYDKLIVQFGTQKMTSELKERAKRAINDELHVMLRRDVFFSHRDFDL 63
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
IL+ YEKG F+LYTGR PS +H+GHL+PF+FTK+LQ+ FKV + I++TDDEK + +N
Sbjct: 64 ILNDYEKGNGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQEKFKVNVYIEITDDEKFL-RN 121
Query: 136 L--SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVG 193
+ ++++++ + EN DIIA GFD KTFIF D +Y+ Y VK+AK +T+N+V
Sbjct: 122 VDYTLDQTKEWSYENILDIIAVGFDPNKTFIFQDTEYIKN-MYPLSVKIAKKLTFNEVRA 180
Query: 194 IFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT 253
FG +IG + +P +Q + P +F + RCLIP IDQDPY+R+
Sbjct: 181 TFGLDTSSNIGIIFYPALQIV------------PTMFEKR---RCLIPAGIDQDPYWRLQ 225
Query: 254 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 313
RD+A +GY K A I S F P L G GKMS+S P +AIY+TD K ++ KI KYAFSGG
Sbjct: 226 RDIAESLGYFKAAQIHSKFLPPLTGPEGKMSSSQPETAIYLTDDPKTVERKIMKYAFSGG 285
Query: 314 QESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 372
Q +VELHRK G N ++D+ ++L F E DD + I+++Y +G MLTGE+KQ L L
Sbjct: 286 QATVELHRKYGGNPDIDVAFQWLYMFFEPDDQRIRKIEEDYRSGAMLTGELKQILVDKLN 345
Query: 373 ELVERHQVARAAVTDEMVDAF 393
+E H+ R D +V+ F
Sbjct: 346 AFLEEHREKREKAKD-LVNVF 365
>sp|Q97ZX0|SYW_SULSO Tryptophan--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=trpS PE=3 SV=2
Length = 380
Score = 328 bits (842), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 170/364 (46%), Positives = 237/364 (65%), Gaps = 22/364 (6%)
Query: 14 EQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDL 73
E V+PWEV GK+DYDKLI +FG Q++ + L R++ L G HV LRR VFF+HRDL
Sbjct: 4 EFTVTPWEVK--GKVDYDKLIVQFGTQKITEELKQRIKNLAGDL-HVMLRRNVFFSHRDL 60
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW 133
+ +L+ YEK + F+LYTGR PS +H+GHL+PF+FTK+LQ+ F L I++TDDEK M
Sbjct: 61 DLVLNDYEKSKGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQEKFNANLYIEITDDEKYMR 119
Query: 134 K-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
++++++ A +N DIIA GF+ KTFIF D +Y+ Y VK+AK +T+++V
Sbjct: 120 NPEFTLDQTRSWAYDNILDIIAVGFNPDKTFIFQDTEYIRN-MYPITVKIAKKLTFSEVR 178
Query: 193 GIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRM 252
FG +IG + +P +Q P +F K RCLIP IDQDPY+R+
Sbjct: 179 ATFGLDASSNIGLIFYPALQIA------------PTMFEKK---RCLIPAGIDQDPYWRL 223
Query: 253 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSG 312
RD+A +GY+K A I S F P L G GKMS+S+P +AIY+ D K ++ KI KYAFSG
Sbjct: 224 QRDIAESLGYYKAAQIHSKFLPPLTGPEGKMSSSNPETAIYLVDDPKTVERKIMKYAFSG 283
Query: 313 GQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVL 371
GQ ++ELHRK G N E+D+P ++L +F EDD ++ I++EY +G MLTGE+KQ L L
Sbjct: 284 GQPTIELHRKYGGNPEIDVPFQWLYYFFEEDDNRIKEIEEEYRSGKMLTGELKQILIDKL 343
Query: 372 TELV 375
+
Sbjct: 344 NNFL 347
>sp|Q976M1|SYW_SULTO Tryptophan--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=trpS PE=3 SV=2
Length = 381
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 167/379 (44%), Positives = 246/379 (64%), Gaps = 22/379 (5%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV GK+DYDKLI +FG Q++ L ++++ + HV LRR VFF+HRDL+ +
Sbjct: 7 VTPWEVK--GKVDYDKLIVQFGTQKITSELKEKIKSIINDELHVMLRRDVFFSHRDLDLV 64
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L Y+ G+ F+LYTGR PS +H+GHL+PF+FTK+LQD F V L I++TDDEK M
Sbjct: 65 LKDYQDGKGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQDKFNVNLYIEITDDEKFMRNPE 123
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
+++++++ A +N DIIA GF+ KTFIF D +Y+ Y +K+AK +T+++V F
Sbjct: 124 YTLDQTRQWAYDNILDIIAVGFNPDKTFIFQDTEYIRN-MYPIAIKIAKKLTFSEVRATF 182
Query: 196 GFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 255
G +IG + +P +Q P +F + RCLIP IDQDPY+R+ RD
Sbjct: 183 GLDTSSNIGIIWYPALQIA------------PTMFEKR---RCLIPAGIDQDPYWRLQRD 227
Query: 256 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 315
+A +GY+K A I S F P L G GKMS+S P +AIY+TD K ++ KI KYAFSGGQ
Sbjct: 228 IAESLGYYKAAQIHSKFLPPLTGPEGKMSSSQPETAIYLTDDPKTVERKIMKYAFSGGQP 287
Query: 316 SVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 374
++ELHRK G N ++D+ ++L F E DD +++ I+++Y +G +LTGE+KQ L + L +
Sbjct: 288 TIELHRKYGGNPDIDVSFQWLYMFFEPDDNKIKKIEEDYRSGALLTGELKQILIEKLNDF 347
Query: 375 VERHQVARAAVTDEMVDAF 393
+E H+ R ++V+ F
Sbjct: 348 LEEHRQKREEAK-KLVNVF 365
>sp|Q8U453|SYW_PYRFU Tryptophan--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=trpS PE=3 SV=1
Length = 385
Score = 299 bits (765), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 166/384 (43%), Positives = 235/384 (61%), Gaps = 23/384 (5%)
Query: 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
E E V+PWEV G IDY+KLI++FG L L++R RLT +F RR FF+HR
Sbjct: 2 EEEFKVTPWEVE--GIIDYNKLIEQFGTSPLTDDLLERTARLTKSELPIFFRRKFFFSHR 59
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
D + +LD YE+G+ F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK
Sbjct: 60 DYDKVLDDYEQGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFDVNLYIQITDDEKF 118
Query: 132 MWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
++K NL+ E+++ A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++
Sbjct: 119 LFKENLTFEDTKYWAYQNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSM 176
Query: 191 VVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 250
+FGFT + IG + FP +Q A P+F F K RCLIP AIDQDPY+
Sbjct: 177 AKAVFGFTEQSKIGMIFFPAIQ-----AAPTF-------FEKK---RCLIPAAIDQDPYW 221
Query: 251 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 310
R+ RD A +GY+K A + S FFP L G GKMSAS P +AIY+TD+ + KI K+A
Sbjct: 222 RLQRDFAESLGYYKTAALHSKFFPPLTGLEGKMSASKPETAIYLTDNPEEAGKKIWKFAL 281
Query: 311 SGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAK 369
+GGQ +++ R+ G N E + K+L F E DD +L G +L GE K+ L +
Sbjct: 282 TGGQPTLKEQREKGGNPEKCVVFKWLEIFFEPDDKKLMERYYACKNGELLCGECKRYLIQ 341
Query: 370 VLTELVERHQVARAAVTDEMVDAF 393
+ E ++ HQ R +++V+ F
Sbjct: 342 RVQEFLKEHQEKRKKA-EKLVEKF 364
>sp|Q9UY11|SYW_PYRAB Tryptophan--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=trpS PE=3 SV=1
Length = 385
Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 225/375 (60%), Gaps = 22/375 (5%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV G +DY+KLI+ FG L + L+++ LT +F RR FF+HRD + +
Sbjct: 7 VTPWEVE--GVVDYNKLIEHFGTSPLTEELLEKTAELTKSELPLFFRRKFFFSHRDYDKV 64
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE+G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K N
Sbjct: 65 LQDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKEN 123
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ E+++ A EN DIIA GFD KTFIF + ++ Y+ + +AK + ++ +F
Sbjct: 124 LTFEDTKHWAYENILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVF 181
Query: 196 GFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 255
GFT + IG + FP +Q P+F + RCLIP AIDQDPY+R+ RD
Sbjct: 182 GFTEQSKIGMIFFPAIQ-----IAPTF----------FEKRRCLIPAAIDQDPYWRLQRD 226
Query: 256 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 315
A +GY+K A I S F P+L +GKMSAS P +AIY+TDS + ++ K+ K+A +GG+
Sbjct: 227 FAESLGYYKTAAIHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFALTGGRP 286
Query: 316 SVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 374
+++ R+ G E + K+L FF EDD +L+ G + GE K+ L + E
Sbjct: 287 TLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEF 346
Query: 375 VERHQVARAAVTDEM 389
++ HQ R ++
Sbjct: 347 LKEHQKRRKKAEKQI 361
>sp|O59584|SYW_PYRHO Tryptophan--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=trpS PE=1 SV=2
Length = 386
Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 156/379 (41%), Positives = 229/379 (60%), Gaps = 23/379 (6%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV G +DYDKLI FG L + L+++ LT +F RR FF+HRD + I
Sbjct: 7 VTPWEVE--GVVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLI 64
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE+G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K N
Sbjct: 65 LKDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKEN 123
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ ++++R A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++ +F
Sbjct: 124 LTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVF 181
Query: 196 GFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 255
GFT + IG + FP +Q P+F F K RCLIP AIDQDPY+R+ RD
Sbjct: 182 GFTEQSKIGMIFFPAIQ-----IAPTF-------FERK---RCLIPAAIDQDPYWRLQRD 226
Query: 256 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 315
A +GY+K A + S F P+L +GKMSAS P +AIY+TDS + ++ K+ K+ +GG+
Sbjct: 227 FAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRP 286
Query: 316 SVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 374
+++ R+ G E + K+L FF EDD +L+ G + GE K+ L + E
Sbjct: 287 TLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEF 346
Query: 375 VERHQVARAAVTDEMVDAF 393
++ HQ R +++V+ F
Sbjct: 347 LKEHQRRRKKA-EKLVEKF 364
>sp|C6A032|SYW_THESM Tryptophan--tRNA ligase OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=trpS PE=3 SV=1
Length = 384
Score = 275 bits (703), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 224/377 (59%), Gaps = 26/377 (6%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV+ G +DY+KLI++FG L L+ + + LT + ++ +R FF+HRD + +
Sbjct: 6 VTPWEVT--GVVDYNKLIEEFGTTPLTDDLLKKTEELTKKELPMYFKRKFFFSHRDYDLV 63
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE G+ F+LYTGRGPS +H+GH++PF TK+LQ+ F V L +Q+TDDEK ++K
Sbjct: 64 LKDYEAGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQENFGVNLYVQITDDEKFLFKPQ 122
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ E ++R A EN DIIA GFD KTFIF D ++ Y+ + +AK VTY+ +F
Sbjct: 123 LTFEGTKRWAYENILDIIAVGFDPDKTFIFQDSEFT--KIYEMAIPIAKKVTYSMAKAVF 180
Query: 196 GFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 255
GF + IG + FP +Q A P+F F K R LIP AIDQDPY+R+ RD
Sbjct: 181 GFNEQSKIGMIFFPAIQ-----AAPTF-------FEEK---RSLIPAAIDQDPYWRIQRD 225
Query: 256 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 315
A +GY+K A + S F P L G GKMSAS P +AIY+TD + KI KYA +GG+
Sbjct: 226 FAESLGYYKTAALHSKFVPGLMGLGGKMSASKPETAIYLTDDPEEAGKKIWKYALTGGRA 285
Query: 316 SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA---GGMLTGEVKQRLAKVLT 372
+ + R+LG + + K+L F E D + + + Y A G +L G+ K+ L + +
Sbjct: 286 TAKEQRELGGEPDKCVVFKWLEIFFEPDE--KKLLERYIACKNGEILCGQCKRYLIEKVQ 343
Query: 373 ELVERHQVARAAVTDEM 389
++ HQ R E+
Sbjct: 344 NFLKEHQEKREKAKKEI 360
>sp|A3MX72|SYW_PYRCJ Tryptophan--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=trpS PE=3 SV=1
Length = 374
Score = 271 bits (694), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 164/386 (42%), Positives = 227/386 (58%), Gaps = 24/386 (6%)
Query: 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
+ E VV+PWEV G++DY KL+ +FG + L Q+ V +++ G H +RRG F+AHR
Sbjct: 2 DEEFVVTPWEVR--GRVDYQKLMQQFGARPLTQAEVSLLEKYAGEV-HPLIRRGFFYAHR 58
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
DL+ IL + +G+ + LYTGRGPS +H+GH+VP++ K+L D F V + Q+TDDEK
Sbjct: 59 DLDAILKWHGEGKPWALYTGRGPSG-PVHIGHMVPWILLKWLSDKFGVEVYFQMTDDEKF 117
Query: 132 MW-KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
+ +EE+ + A ENA D+IA GF K + D + Y KVAK +T+N
Sbjct: 118 YDDPEMRLEEATKWAYENALDVIALGFTPDKLHLIIDTKDIK-PLYPIAAKVAKKLTWNT 176
Query: 191 VVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLR---CLIPCAIDQD 247
V FGFT +IG + +P +Q AV P+ H R LIPCAIDQD
Sbjct: 177 VKATFGFTDSTNIGLIFYPSLQ----IAVAFLPTEL--------HGRPTPVLIPCAIDQD 224
Query: 248 PYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
PYFR+ RD+A +GY KPA + S F AL GE+ KMSAS+PNSAIY D K I+ KI
Sbjct: 225 PYFRLARDIAESLGYPKPATLYSKFIMALTGES-KMSASNPNSAIYTIDDEKTIRRKIAN 283
Query: 308 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRL 367
A++GG+ + E R+LG N +V Y F DDA +E I +G +L GE KQ L
Sbjct: 284 -AYTGGRPTAEEQRRLGGNPDVCPVYHYHMLFDPDDASVEKIYHSCKSGALLCGECKQML 342
Query: 368 AKVLTELVERHQVARAAVTDEMVDAF 393
+ + + V++HQ AR D+ VDA+
Sbjct: 343 YEKIRKFVKQHQEAREKARDK-VDAY 367
>sp|B6YUH1|SYW_THEON Tryptophan--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=trpS PE=3 SV=1
Length = 384
Score = 270 bits (691), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/368 (41%), Positives = 223/368 (60%), Gaps = 22/368 (5%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PW+V G +DY+KLI++FG L L+++ +LT ++ RR FF+HRD + +
Sbjct: 6 VTPWDVE--GLVDYNKLIEEFGTSPLTDELLEKTAQLTKSELPLYFRRRFFFSHRDYDKV 63
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN- 135
L YE G+ F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K+
Sbjct: 64 LQDYESGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKDK 122
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ E+++ A +N DIIA GFD +TFIF D ++ Y+ + +AK + ++ +F
Sbjct: 123 LTFEDTKYWAYQNILDIIAVGFDPDRTFIFQDSEFT--KIYEMAIPIAKKINFSMAKAVF 180
Query: 196 GFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 255
GFT + IG + +P +Q A P+F F K RCLIP AIDQDPY+R+ RD
Sbjct: 181 GFTEQSKIGMIFYPAIQ-----AAPTF-------FEKK---RCLIPAAIDQDPYWRLQRD 225
Query: 256 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 315
A +GY+K A I S F P L G GKMSAS P +AIY+TD + + KI KYA +GG+
Sbjct: 226 FAESLGYYKTAAIHSKFVPGLMGLEGKMSASKPETAIYLTDDPEEVGRKIWKYALTGGRA 285
Query: 316 SVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 374
+ + R+ G E + K+L FF EDD +L G +L G+ K+ L K + E
Sbjct: 286 TAKEQREKGGEPEKCVVFKWLEIFFEEDDKKLMERYHACKNGELLCGQCKRYLIKKVQEF 345
Query: 375 VERHQVAR 382
++ HQ R
Sbjct: 346 LKEHQKKR 353
>sp|Q5JEP3|SYW_PYRKO Tryptophan--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=trpS PE=3 SV=1
Length = 384
Score = 263 bits (673), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/368 (41%), Positives = 219/368 (59%), Gaps = 22/368 (5%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PW+V G +DY+KLI++FG L L+++ LT +F RR FF+HRD + +
Sbjct: 6 VTPWDVE--GVVDYNKLIEQFGTSPLTDELIEKTAELTKSELPLFFRRRFFFSHRDYDKV 63
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K
Sbjct: 64 LADYESGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQENFDVNLYIQITDDEKFLFKEK 122
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
LS E+++R A EN DIIA GFD KTFIF + ++ Y+ + +AK + ++ +F
Sbjct: 123 LSFEDTKRWAYENILDIIAVGFDPDKTFIFQNSEFT--KIYEMALPIAKKINFSMARAVF 180
Query: 196 GFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 255
GF + IG + +P +Q A P+F F K RCLIP AIDQDPY+R+ RD
Sbjct: 181 GFNEQSKIGMIFYPAIQ-----AAPTF-------FEKK---RCLIPAAIDQDPYWRLQRD 225
Query: 256 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 315
A +GY+K A I S F P L GKMSAS P +A+Y+TD + KI K+A +GGQ
Sbjct: 226 FAESLGYYKTAAIHSKFVPGLTSLEGKMSASKPETAVYLTDDPEEAGKKIWKFALTGGQP 285
Query: 316 SVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 374
+++ R+ G N E + K+ F E DD +L + AG + G+ K+ L + + +
Sbjct: 286 TLKEQREKGGNPEKCVVFKWFEIFFEPDDEKLMERYRACKAGELTCGQCKRELIERVQKF 345
Query: 375 VERHQVAR 382
++ HQ R
Sbjct: 346 LKEHQKKR 353
>sp|Q8ZTU5|SYW_PYRAE Tryptophan--tRNA ligase OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=trpS
PE=3 SV=1
Length = 375
Score = 255 bits (651), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 219/379 (57%), Gaps = 21/379 (5%)
Query: 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
E E VV+PWEV G++DY+KL+ FG + L + V +++ G H +RRG F+AHR
Sbjct: 2 EEEFVVTPWEVR--GRVDYEKLLKHFGAKPLTKDEVALLEKYAGEV-HPLIRRGFFYAHR 58
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
D + I+ + +G + LYTGRGPS +H+GH+VP++ K+ D F + + Q+TDDEK
Sbjct: 59 DFDFIMKWHGEGRPWALYTGRGPSG-PVHIGHMVPWILLKWFSDKFGLEVYFQITDDEKF 117
Query: 132 MWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
+ +EE+ A ENA D+IA GF + + D + Y V+VAK +T+N
Sbjct: 118 YDDPEMKLEEATNWAYENALDVIALGFSPERLHLIIDTKDIK-PLYPIAVRVAKKLTWNT 176
Query: 191 VVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 250
V FGFT +IG + +P +Q AV P+ ++ LIPCAIDQDPYF
Sbjct: 177 VKATFGFTDSTNIGLIFYPSLQ----IAVAFLPTEL-----RREATPVLIPCAIDQDPYF 227
Query: 251 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 310
R+ RD+A +GY KP+ + S F AL GE+ KMSAS+P+SAIY D K ++ K+ AF
Sbjct: 228 RLARDIADALGYPKPSTLYSKFIMALTGES-KMSASNPDSAIYTLDDEKTVRRKVMN-AF 285
Query: 311 SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVK----QR 366
+GG+ + E RK G N EV Y F DDA +E I+++ +G +L GE K ++
Sbjct: 286 TGGRPTAEEQRKYGGNPEVCPVFHYHMLFDPDDASVEKIRQDCKSGALLCGECKLKLHEK 345
Query: 367 LAKVLTELVERHQVARAAV 385
+ K L E ER + AR V
Sbjct: 346 ITKFLKEHRERREKARGKV 364
>sp|A4WL99|SYW_PYRAR Tryptophan--tRNA ligase OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=trpS PE=3 SV=1
Length = 374
Score = 253 bits (645), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 217/375 (57%), Gaps = 21/375 (5%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
VV+PWEV GK+DY+KL+ +FG + L V +++ G H ++RG F+AHRD +
Sbjct: 6 VVTPWEVR--GKVDYEKLLRQFGAKPLTAEEVALLEKYAGDV-HPLIKRGFFYAHRDFDF 62
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK- 134
IL + +G + LYTGRGPS +H+GH+VP++ K+ D F V + Q+TDDEK
Sbjct: 63 ILKWHGEGRPWALYTGRGPSG-PVHIGHMVPWILLKWFSDKFGVEVYFQMTDDEKFFDDP 121
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 194
+ +EE+ A ENA D+IA GF K + D + Y V+VAK +T+N V
Sbjct: 122 EMKLEEATGWAYENALDVIALGFGPDKLHLIVDTKDIA-PLYPIAVRVAKKLTWNTVKAT 180
Query: 195 FGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTR 254
FGFT +IG + +P +Q AV P+ K+ LIPCAIDQDPYFR+ R
Sbjct: 181 FGFTDSSNIGLIFYPSLQ----IAVAFLPTEL-----KKEPTPVLIPCAIDQDPYFRLAR 231
Query: 255 DVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ 314
D+A + Y KP + S F AL GE+ KMSAS+P+SAIY D K +K+KI AF+GG+
Sbjct: 232 DIADSLSYPKPTTLYSKFIMALTGES-KMSASNPDSAIYTMDDDKTVKHKILN-AFTGGR 289
Query: 315 ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVK----QRLAKV 370
+ E RK G N ++ Y F DDA +E I+++ +G +L GE K ++++K
Sbjct: 290 PTAEEQRKYGGNPDICPVFHYHMLFDPDDASVEKIRQDCKSGALLCGECKLKLHEKISKF 349
Query: 371 LTELVERHQVARAAV 385
L E ER + AR V
Sbjct: 350 LKEHRERREKARGKV 364
>sp|Q9HN66|SYW2_HALSA Tryptophan--tRNA ligase 2 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS2 PE=3 SV=1
Length = 380
Score = 208 bits (529), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 206/382 (53%), Gaps = 32/382 (8%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+P+ V S +DY+KL+ +FG L D+ R P H + RG+F+A RD++D
Sbjct: 8 VTPYAVESD-DLDYEKLLARFGADELTD---DQRARF---PDHPLVNRGLFYAGRDVDDF 60
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL 136
L A E+ + TG GPS +HLGH + F F + LQD F + + L+DDEK +K+
Sbjct: 61 LTAGEQS----IVTGVGPSG-PMHLGHAMVFYFARRLQDEFGARVYVPLSDDEKYWFKDQ 115
Query: 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFG 196
+ E+ R N +D++A GFD T I D Y A V + + ++G
Sbjct: 116 TPAETGDYLRANLRDLLAVGFDPELTRIVVD-TRDADVLYPLATAFAGDVRHATLQNVYG 174
Query: 197 FTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 256
D++G+ +P VQ P L G+ L+P A+DQDP+ R++RDV
Sbjct: 175 --EPDNVGQAFYPAVQTAHLL--------LPQLVHGEHE--TLVPIAVDQDPHVRVSRDV 222
Query: 257 APRIGY--HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ 314
A + Y KP + F P+L G GKMS+S +I +TDS ++ K+ +A++GG+
Sbjct: 223 AAKARYPVGKPGALLMQFLPSLAG-PGKMSSS-AGVSIRLTDSPDTVREKVRTHAYTGGR 280
Query: 315 ESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE 373
SVE HR G D+P +YLS F E DDAEL I++EY AG +L+GE+K A +TE
Sbjct: 281 ASVEEHRAKGGVPAEDVPFQYLSAFFEPDDAELARIEREYRAGDLLSGELKDLAADRITE 340
Query: 374 LVERHQVARAAVTD--EMVDAF 393
+ HQ RAA+ D E +DAF
Sbjct: 341 FLAAHQRRRAALGDVTEALDAF 362
>sp|Q8TYF7|SYW_METKA Tryptophan--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=trpS PE=3 SV=1
Length = 374
Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 188/385 (48%), Gaps = 31/385 (8%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
++ PW+V ++DY++L ++FG + +D+ + + + R R P L RG+ F HRD +
Sbjct: 1 MIDPWDVE---EVDYERLTEEFGIRPIDEKVRELLPR---RFP--LLDRGIVFGHRDYDS 52
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
L Y G+ + +G PS +HLGH + Q V + + + D E +N
Sbjct: 53 FLKDYNDGKLVSVLSGMMPSGR-MHLGHKTVVDQLVFYQQEMDVKVYVPIADLEAHHARN 111
Query: 136 LSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 194
+ ++ + R+A E + A G D+ + + +A +T+N V
Sbjct: 112 MDLDRAHRIAVEEYVLNYAALGLDLDPDRCEIYLQSERKTVQRMALLLAGRLTWNTVKNT 171
Query: 195 FGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSF--PHLFSGKDHLRCLIPCAIDQDPYFRM 252
+GFTGE ++G P VQ A P PH R L+P +DQDP+ R+
Sbjct: 172 YGFTGETNMGHAFAPIVQ----AADILHPQEIEGPH--------RVLVPVGVDQDPHLRL 219
Query: 253 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSG 312
TRD+A + KPA F L G GKMS+S PN+AI++TD + K K+ A +G
Sbjct: 220 TRDIAEKEDLIKPASTYHRFMTGLTG--GKMSSSKPNTAIFLTDDPETAKEKVWN-AKTG 276
Query: 313 GQESVELHRKLGANLEVDIPVKYLSFFLED----DAELEHIKKEYGAGGMLTGEVKQRLA 368
G ++E HR+ G N + + + + + L D D +L I+K+ G ++ GE K+ +
Sbjct: 277 GGATLEEHREHGGNPDECVVYELMVYHLADRIGGDEKLREIRKKCREGDIICGECKRMVG 336
Query: 369 KVLTELVERHQVARAAVTDEMVDAF 393
+ L E++E + R V DE+ D
Sbjct: 337 EALAEILEELERRREDVRDELPDLL 361
>sp|O26352|SYW_METTH Tryptophan--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=trpS PE=3 SV=1
Length = 364
Score = 139 bits (349), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 110/385 (28%), Positives = 181/385 (47%), Gaps = 52/385 (13%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
++ PW S K++Y LI+ FG + + L D V P +RRG+ F HRD
Sbjct: 1 MIDPW---GSAKLEYQDLIENFGVRPFSEVL-DEVPE-----PSWLMRRGIIFGHRDYER 51
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
I+ A +KGE F + TG PS +H+GH + ++ D + I + D E +
Sbjct: 52 IISAMKKGEDFAVVTGMMPSGR-MHIGHKMIVDQLRWY-DRMGAEIFIPIADMEAYSARG 109
Query: 136 LSVEESQRLA-RENAKDIIACGFDVTK----------TFIFSDFDYVGGAFYKNMVKVAK 184
+ E+S+R+A E IA G D+ K + D YV +A
Sbjct: 110 VDFEDSRRIAIEEYIAGYIALGLDLEKDNIHVYLQSENLMVEDLAYV----------LAG 159
Query: 185 CVTYNKVVGIFGFTGEDHIGKVSFPPVQ--EMIYKAVPSFPSSFPHLFSGKDHLRCLIPC 242
V +N++ I+GFTG + + P +Q ++++ + P ++P
Sbjct: 160 KVNFNELRAIYGFTGSTSMAHMYAPIIQVSDILHPQLDELGGPRP----------VIVPV 209
Query: 243 AIDQDPYFRMTRDVAPRI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 298
DQDP+ R+TRD+A R G+ P+ F L G GKMS++ P SAI+++D+
Sbjct: 210 GPDQDPHIRLTRDIAARFRDRYGFILPSSTYHRFMGGLTG--GKMSSNRPKSAIFLSDTP 267
Query: 299 KAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGG 357
+ + KI + A +GG+E+++ R+LG E I + L + + D+ LE I + G
Sbjct: 268 EEAEAKI-RNAKTGGRETLKEQRELGGVPEECIIYETLLYHMSGSDSRLEEIYESCRNGT 326
Query: 358 MLTGEVKQRLAKVLTELVERHQVAR 382
++ GE K A+ + + E V R
Sbjct: 327 LMCGECKNNTAEFIRKFFEELSVKR 351
>sp|Q58810|SYW_METJA Tryptophan--tRNA ligase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=trpS PE=3 SV=1
Length = 370
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 192/380 (50%), Gaps = 40/380 (10%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
++PWE + IDY K +++FG + +VD + L + H F RR + HRD I
Sbjct: 6 LTPWETPAV--IDYKKTMEQFGVK----PIVDVLGDL--KEEHHFFRRNIILGHRDFERI 57
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ---DAFKVPLVIQLTDDEKCMW 133
+DA + ++F + +G PS + +H GH + K+ Q D +P+ D + W
Sbjct: 58 VDAIKNNKEFAVVSGMMPSGK-MHFGHKMVVDLLKFYQKYTDNINIPIA-----DLEAYW 111
Query: 134 -KNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNK 190
+N+S E ++ LA E + IA G D K ++ Y K++ + +K +++
Sbjct: 112 ARNMSFETTKELALNEYITNYIALGLDPEKINVYLQSKYQK---VKDLALILSKRTNWSE 168
Query: 191 VVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 250
+ I+GF GE +IG V F P+ ++ P + + ++P IDQDP+
Sbjct: 169 MKAIYGFKGETNIGHV-FAPIVQVADILHPQLDENL-----SPEPKPVVVPVGIDQDPHI 222
Query: 251 RMTRDVAPRIGYHK---PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
R+TRD+A R K P+ F L G GKMS+S P +AI++TD K +K KI
Sbjct: 223 RLTRDIANRAKEFKFIPPSSTYHRFMTGLLG--GKMSSSKPETAIFLTDDEKTVKKKIFS 280
Query: 308 YAFSGGQESVELHRKLGANLEVDIPVK-YLSFFLEDDAELEHIKKEYGAGGMLTGEVK-- 364
A +GG+E++E H+K G E + + +L + DD EL I ++ +G + G+ K
Sbjct: 281 -AKTGGRETLEEHKKYGGVPEECVVYELFLYHLILDDKELAEIYQKCRSGELTCGKCKKM 339
Query: 365 --QRLAKVLTELVERHQVAR 382
+R+ + L +L E+ + A+
Sbjct: 340 AYERVVEFLKDLKEKREQAK 359
>sp|Q9Y924|SYW_AERPE Tryptophan--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=trpS PE=1
SV=2
Length = 372
Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 177/364 (48%), Gaps = 39/364 (10%)
Query: 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88
DYD+L+ FG + + L + R G P +RRG+ F HRD + IL+A +GE+ +
Sbjct: 16 DYDRLLRTFGIRPFSEVLP--LLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAV 73
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQ-DAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-R 146
TG PS + H GH + YLQ + FKV + + D E + + EE+ R+A
Sbjct: 74 LTGFMPSGK-FHFGHKLTVDQLIYLQKNGFKV--FVAIADAEAFAVRRIGREEAVRIAVE 130
Query: 147 ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGK 205
E ++IA G D T + F G Y ++++ + VT ++ I+G
Sbjct: 131 EYIANMIALGLDPKDTEFY--FQTNRGTPYFRLIQLFSGKVTAAEMEAIYG--------- 179
Query: 206 VSFPPVQEMIYKAVPSFPSSFPHL----FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 261
P + M A + + H+ + G H+ ++P DQDP+ R+TRD+A R+
Sbjct: 180 -ELTPAKMM---ASLTQAADILHVQLDEYGGYRHV--VVPVGADQDPHLRLTRDLADRMA 233
Query: 262 ----YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESV 317
+PA P L G KMS+S P+S I++TD + +NK+ + A +GG+ +
Sbjct: 234 GVVELERPASTYHKLQPGLDGR--KMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATA 290
Query: 318 ELHRKLGANLEVDIPVKYLSFF--LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 375
E R+LG EV V ++ + + DD E++HI G +L GE KQ + L +
Sbjct: 291 EEQRRLGGVPEV-CSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFL 349
Query: 376 ERHQ 379
HQ
Sbjct: 350 AEHQ 353
>sp|A2BLD4|SYW_HYPBU Tryptophan--tRNA ligase OS=Hyperthermus butylicus (strain DSM 5456
/ JCM 9403) GN=trpS PE=3 SV=1
Length = 373
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 110/383 (28%), Positives = 186/383 (48%), Gaps = 30/383 (7%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
+ PW +S+ +++Y+KL FG + Q L+ V++ G+P H +RRG+ F HRD I
Sbjct: 6 LDPW--ASAIRLEYEKLFRYFGIKPF-QPLLPEVEKAFGKP-HRLMRRGIIFGHRDYEKI 61
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
L+AY GE+ L TG PS + H GH +V Y + F++ +VI D E +
Sbjct: 62 LEAYRSGERIALVTGFMPSGK-FHFGHKMVADQIIYYQKLGFEIFVVI--ADAEAYAVRR 118
Query: 136 LSVEESQRLA-RENAKDIIACGFDVTK-TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVG 193
L + + E ++IA G + K T I+ +Y +Y+ + ++ VT ++
Sbjct: 119 LDRRKIIEIGLYEYVANLIALGLEKNKHTHIYFQTNY-ETPYYRLIQMFSRRVTLEEMSA 177
Query: 194 IFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT 253
I+G I + ++++ + F F ++ ++P DQDP+ R+T
Sbjct: 178 IYGDLEPSKI-MAALTQAADILHPQLDYF-GGFKYV---------VVPVGADQDPHIRLT 226
Query: 254 RDVAPR----IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYA 309
RD+A R +G +PA F L G KMS+S P I++TD K+ + A
Sbjct: 227 RDIAARFENELGLRRPASTYHRFQTGLDG--NKMSSSRPEYTIFLTDPVDIAVRKLKR-A 283
Query: 310 FSGGQESVELHRKLGANLE-VDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLA 368
+GG+ +VE R+LG E + YL +EDD +L I ++ +L G K+ A
Sbjct: 284 LTGGRATVEEQRRLGGEPEKCTVYEFYLYHLIEDDTQLRKIYEDCRGSRLLCGPDKEYAA 343
Query: 369 KVLTELVERHQVARAAVTDEMVD 391
++L + +E HQ D +++
Sbjct: 344 ELLAKFLEEHQRRLERARDRVLE 366
>sp|O28579|SYW_ARCFU Tryptophan--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=trpS PE=3 SV=1
Length = 420
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 180/428 (42%), Gaps = 78/428 (18%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSL--VDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V+PWEV G IDY KLI++FG Q + L +D PH+ +RRG F HRD
Sbjct: 3 VTPWEVE--GVIDYSKLIEEFGMQPFSEVLPEIDN--------PHILMRRGAIFGHRDYW 52
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
I++A +K E + + +G PS H GH + + Q A V + D E +
Sbjct: 53 RIIEAMQKKEPWAVMSGFMPSGLP-HFGHKMTMDEIVWHQSAGGKAFV-AIADMEAHSVR 110
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVG 193
LS E+++ L K IIA G F + K++ +++ V ++++
Sbjct: 111 GLSWEKTRELGMLYIKSIIALGLREDAVIYFQS----KSSHVKDLAFELSAEVNFSELRA 166
Query: 194 IFGFTGEDHIGKVSFPPVQ--EMIYK-----------AVPSFPSSFPHL----------- 229
I+GF + + K+ +Q ++++ VP PH+
Sbjct: 167 IYGFNSDTSLAKMFVTAIQAADILHPQLSDFGGPKPVVVPVGADQDPHMRLTRDLAARIS 226
Query: 230 -FS--------------GKDHLRCLIPCAIDQDPYF-------------RMTRDVAPRIG 261
FS G ++L L D+ Y R R + IG
Sbjct: 227 IFSFEPVEGGVRVRSRKGAEYLSSLRDLEFDKKIYEEHMDIFGEAEEIERAVRKIEVEIG 286
Query: 262 ---YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVE 318
+ P+ F L G GKMS+S P S I + D + K+ K AF+GG+ + E
Sbjct: 287 GFAFIPPSSTYHRFTTGLTG--GKMSSSKPESYISLLDPPEEGAKKVMK-AFTGGRATAE 343
Query: 319 LHRKLGANLEVDIPVKYLSFFLED-DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 377
R+LG + + + SF L D D EL I+ E G +L G+ K+ A+++ ++
Sbjct: 344 EQRRLGGEPDRCVVFELYSFHLIDSDEELNQIEAECREGRLLCGKCKKMAAELVKSFLKE 403
Query: 378 HQVARAAV 385
HQ AV
Sbjct: 404 HQEKMEAV 411
>sp|Q8PWV5|SYW_METMA Tryptophan--tRNA ligase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=trpS PE=3 SV=2
Length = 491
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 108/248 (43%), Gaps = 28/248 (11%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
+ PW SSS DY KL ++FG + L + PH ++RR + F HRD I
Sbjct: 5 LDPW--SSSNITDYSKLFEEFGISPFENILPEIPS------PHKYMRRRIIFGHRDYEQI 56
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL 136
+A G F + G PS + +HLGH + + Q+ + + D E +
Sbjct: 57 AEAMRTGAPFSVMDGFMPSGK-VHLGHKMVMDQIVWHQEK-GASAFVGIADREAFSVRGF 114
Query: 137 SVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGI 194
S ++ + + E +IA GF F G K++ ++ V ++++ I
Sbjct: 115 SWQKCREIGVEEYILSLIALGFKPEGLIYFQS----GCGSVKDLAFELGAKVNFSELSAI 170
Query: 195 FGFTGEDHIGKVSFPPVQ--EMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRM 252
+GF+GE + + Q +++ + F S P ++P DQDP+ R+
Sbjct: 171 YGFSGETSLSHMLSVATQAADILQPQLEEFGGSKP----------VVVPVGPDQDPHLRL 220
Query: 253 TRDVAPRI 260
TR +A ++
Sbjct: 221 TRGLAGKM 228
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 265 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLG 324
PA F LQG GKMS+S P+S I +TD K K+ K A +GG ++E +KLG
Sbjct: 360 PASTYHRFMSGLQG--GKMSSSIPDSHIALTDDPKEGAKKV-KRAKTGGCITLEEQKKLG 416
Query: 325 ANL-EVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 383
E + L +EDD EL I++E G + G KQ A+ + E ++ HQ R
Sbjct: 417 GKPDECSVFELMLFHLIEDDEELLEIREECIYGTRMCGSCKQLAAEKMQEFLKDHQEKRE 476
Query: 384 AVTDEM 389
+++
Sbjct: 477 LAREQL 482
>sp|Q8TUA1|SYW_METAC Tryptophan--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=trpS PE=3 SV=1
Length = 437
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 24/246 (9%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
+ PW SSS DY KL ++FG + L + PH+++RR V F HRD I
Sbjct: 5 LDPW--SSSDITDYSKLFEEFGISPFENVLPEIPS------PHMYMRRKVIFGHRDYEQI 56
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL 136
+A G F + G PS + +HLGH + + Q+ + + D E +
Sbjct: 57 AEAMRTGAPFSVMDGFMPSGK-VHLGHKMVMDQIVWHQE-MGASAFVGIADREAFSVRGF 114
Query: 137 SVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGI 194
S ++ + + E +IA GF F G K++ ++ V ++++ I
Sbjct: 115 SWQKCREIGVEEYILSLIALGFKPDGLIYFQS----GCGSVKDLAFELGAKVNFSELSAI 170
Query: 195 FGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTR 254
+GF+GE + M+ A + P L ++P DQDP+ R+TR
Sbjct: 171 YGFSGETSL--------SHMLSVATQAADILQPQLEEFGGPKPVVVPVGPDQDPHLRLTR 222
Query: 255 DVAPRI 260
+A ++
Sbjct: 223 GLAGKM 228
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 251 RMTRDVAPRIG---YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
++ R+V G + PA F LQG GKMS+S P S I +TDS K K+ K
Sbjct: 289 KLVREVTVEFGGYAFIPPASTYHRFMSGLQG--GKMSSSIPESQIALTDSPKEGAKKV-K 345
Query: 308 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQR 366
A +GG ++E +KLG E + + F L D EL IK+E +G + G KQ
Sbjct: 346 RAKTGGCVTLEEQKKLGGKPEECSVFELMLFHLIASDEELLEIKQECISGTRMCGSCKQL 405
Query: 367 LAKVLTELVERHQVAR 382
A+ + E ++ HQ R
Sbjct: 406 AAEKMQEFLKDHQEKR 421
>sp|O29482|SYY_ARCFU Tyrosine--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC 49558
/ VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=tyrS
PE=1 SV=1
Length = 323
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 134/318 (42%), Gaps = 54/318 (16%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEE 140
E EK Y G PS E +HLGH++ LQ+A +++ L D + + + EE
Sbjct: 28 ETKEKPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEA-GFEIIVLLADIHAYLNEKGTFEE 85
Query: 141 SQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG 199
+A N K IA G D ++ F+ + + +++K+A+ T N+
Sbjct: 86 IAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNR-----ARRS 140
Query: 200 EDHIGKVSFPP-VQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 258
D + + P V +MIY + + HL G D L IDQ + R+ P
Sbjct: 141 MDEVSRRKEDPMVSQMIYPLMQAL--DIAHL--GVD----LAVGGIDQRKIHMLARENLP 192
Query: 259 RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK-YAFSG----- 312
R+GY P + + L G+ KMS+S N I V D + ++ KI K Y +G
Sbjct: 193 RLGYSSPVCLHTPILVGLDGQ--KMSSSKGNY-ISVRDPPEEVERKIRKAYCPAGVVEEN 249
Query: 313 --------------GQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGM 358
G+ VE K G ++E Y SF E + +++ +G +
Sbjct: 250 PILDIAKYHILPRFGKIVVERDAKFGGDVE------YASF--------EELAEDFKSGQL 295
Query: 359 LTGEVKQRLAKVLTELVE 376
++K +AK L L+E
Sbjct: 296 HPLDLKIAVAKYLNMLLE 313
>sp|Q9HN83|SYW1_HALSA Tryptophan--tRNA ligase 1 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS1 PE=3 SV=1
Length = 513
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 102/257 (39%), Gaps = 39/257 (15%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRP-PHVFLRRGVFFAHRDLN 74
+ PW S+ DY L D+FG + + L G P PH +RR + F HRD
Sbjct: 16 ALDPW--GSATISDYRALFDEFGIEAFEDVL-------DGVPTPHSLMRRAIIFGHRDYR 66
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ----DAFKVPLVIQLTDDEK 130
+ A E F +G P+ + H+GH + F + Q DA+ + + D E
Sbjct: 67 RVAAAMRNDEPFAALSGFMPTGDP-HIGHKMVFDELIWHQQQGGDAYAL-----IADLEA 120
Query: 131 CMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF---SDFDYVGGAFYKNMVKVAKCVT 187
+ L E A + ++A GFD + ++ ++ + AF + A
Sbjct: 121 HSARGLDWAEIDEHAEDYLLSLLALGFDADEGELYRQSTNRELQDLAFELGI--EANTSE 178
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQD 247
+ + G G T H+ V V +M P + P +IP DQD
Sbjct: 179 FEAIYGFGGDTDVSHMQSV----VTQMADILYPQLDAPKP----------TVIPVGPDQD 224
Query: 248 PYFRMTRDVAPRIGYHK 264
P+ R RD+A R Y K
Sbjct: 225 PHVRFARDLAERTRYFK 241
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 7/134 (5%)
Query: 261 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELH 320
G+ P+ + F L G GKMS+S+P S I + D + +K+ A +GG+++
Sbjct: 374 GFVPPSSVYHRFMTGLTG--GKMSSSEPASHISLLDDPETGADKVAA-ATTGGRDTAAEQ 430
Query: 321 RKLGANLEVDIPVKYLSFFL---EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 377
R+ G + D PV L +L +DDA E + E G L G K++ A ++ + +E
Sbjct: 431 RERGGEPD-DCPVYELYAYLLAGDDDALAEEVYAECANGDRLCGGCKEQAADLMAQFLET 489
Query: 378 HQVARAAVTDEMVD 391
HQ R A D + +
Sbjct: 490 HQENREAARDVLAE 503
>sp|Q978Y8|SYW_THEVO Tryptophan--tRNA ligase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=trpS
PE=3 SV=1
Length = 426
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 108/248 (43%), Gaps = 32/248 (12%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
+++PW SSS DY++L +FG DQS D + H RR V R
Sbjct: 1 MINPW--SSSDFFDYERLKKEFGIS--DQS--DNID-------HFLFRRKVILGQRGFEY 47
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
I A + KF + TG PS E +HLG+ Y Q + I + D E +
Sbjct: 48 IKYAIDNKIKFNVMTGLMPSGE-MHLGNKSAIDQVIYFQ-KLGGSVSIAVADLESYSTRG 105
Query: 136 LSVEESQRLAREN-AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 194
+ +++++ +A E + IA G + + S V Y + N++ +
Sbjct: 106 IPLDKAREIAIEKYILNYIAMGLQPCEIYFQSKNKDVQFLSYI----LGNWTNMNELKAL 161
Query: 195 FGFTGEDHIGKVSFPPVQ--EMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRM 252
+GFT + I ++ P +Q ++++ + ++ P ++P DQDP+ R+
Sbjct: 162 YGFTDSNDILHINAPLIQAADVLHTQLNNYGGPAP----------TVVPVGFDQDPHIRL 211
Query: 253 TRDVAPRI 260
RD+A R+
Sbjct: 212 MRDLAKRM 219
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 265 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLG 324
P+ L+G GKMS+S P+S I + D + K KI + A +GG+++ E RKLG
Sbjct: 299 PSATYQKLMKGLKG--GKMSSSVPDSLISMNDDVEEAKRKIMR-ALTGGRDTEEEQRKLG 355
Query: 325 ANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTG----EVKQRLAKVLTELVERHQV 380
E ++ ++DD + + +E +G + G E+ +++ L ++ E+ ++
Sbjct: 356 GEPEKCPVFDLYNYEIDDDKYVNEVFEECKSGKRMCGYCKREIADKMSIFLKDIKEKREI 415
Query: 381 ARAAVT 386
AR ++
Sbjct: 416 AREKLS 421
>sp|Q8TSI1|SYY_METAC Tyrosine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=tyrS PE=3 SV=1
Length = 317
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 24/223 (10%)
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
Y G PS + +H+GH++ LQ A FK+ ++ L D + K ++EE +++A
Sbjct: 33 YVGYEPSGK-IHMGHVLTVNKLIDLQKAGFKITVL--LADVHAYLNKKGTLEEVRKIADY 89
Query: 148 NAKDIIACGFDVTKT-FIF-SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK 205
N + IA G D +T F++ SDF +G + N++K+++ VT N+ D +G+
Sbjct: 90 NRRCFIALGLDEEQTDFVYGSDFQ-LGAEYMLNVLKLSRAVTLNR-----AKRSMDEVGR 143
Query: 206 -VSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK 264
+ P V +M+Y + + + + + IDQ + R+ +G+
Sbjct: 144 AMDDPTVSQMVYPLMQAIDIALLEV--------DVAVGGIDQRKIHMLARENLKSLGFET 195
Query: 265 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
P I + P L G G AS ++ I + D+ + I K K
Sbjct: 196 PICIHT---PILLGLDGTKMASSKDNFISIDDTGEDIYRKFKK 235
>sp|Q46BQ5|SYY_METBF Tyrosine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=tyrS PE=3 SV=1
Length = 317
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 98/221 (44%), Gaps = 20/221 (9%)
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAREN 148
Y G PS + +H+GH++ LQ A + + L D + + ++EE +++A N
Sbjct: 33 YVGYEPSGK-IHMGHVLTVNKLIDLQKA-GFEITVLLADVHAYLNRKGTLEEVRKIADYN 90
Query: 149 AKDIIACGFDVTKTFIFSDFDYVGGAFYK-NMVKVAKCVTYNKVVGIFGFTGEDHIGK-V 206
+ IA G D KT DY GA Y N++K+++ VT N+ D +G+ +
Sbjct: 91 KRCFIALGLDKEKTNFVYGSDYQLGAEYMLNVLKLSRSVTLNR-----ARRSMDEVGRAM 145
Query: 207 SFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 266
P V +M+Y + + + G D + IDQ + R+ +G+ P
Sbjct: 146 DDPTVSQMVYPLMQAIDIA----MLGVD----IAVGGIDQRKIHMLARENLKNLGFETPI 197
Query: 267 LIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
I + P L G G AS + I V D+ + I K+ K
Sbjct: 198 CIHT---PILLGLDGTKMASSKENFISVDDTEEEIYRKLKK 235
>sp|Q8PVK0|SYY_METMA Tyrosine--tRNA ligase OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=tyrS
PE=3 SV=1
Length = 317
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 24/223 (10%)
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
Y G PS + +H+GH++ LQ A FK+ ++ L D + + ++EE +++A
Sbjct: 33 YVGYEPSGK-IHMGHVLTVNKLIDLQKAGFKITVL--LADVHAYLNRKGTLEEVRKIADY 89
Query: 148 NAKDIIACGFDVTKT-FIF-SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK 205
N + IA G D +T F++ SDF +G + N++K+++ VT N+ D +G+
Sbjct: 90 NRRCFIALGLDEEQTDFVYGSDFQ-LGAEYMLNVLKLSRAVTLNR-----AKRSMDEVGR 143
Query: 206 -VSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK 264
+ P V +M+Y + + + + + IDQ + R+ +G+
Sbjct: 144 AMDDPTVSQMVYPLMQAIDIALLEV--------DVAVGGIDQRKIHMLARENLKSLGFET 195
Query: 265 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
P I + P L G G AS ++ I V D+ + I K K
Sbjct: 196 PICIHT---PILLGLDGTKMASSKDNFISVDDTEEEIYRKFKK 235
>sp|P0DG61|SYW_STRPQ Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=trpS PE=3 SV=1
Length = 340
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 128/312 (41%), Gaps = 49/312 (15%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTK-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAR 146
+ TG P+ + LHLGH V + + +LQ+ K + + L D + E Q
Sbjct: 6 ILTGDRPTGK-LHLGHYVGSLKNRVFLQNENKYKMFVFLADQQALTDHAKESELIQESIG 64
Query: 147 ENAKDIIACGFDVTKTFIF--SDFDYVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTG 199
A D ++ G D ++ IF S + +Y N+V +A+ T + GF
Sbjct: 65 NVALDYLSVGLDPKQSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGE 124
Query: 200 EDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 259
G + +P Q + +F ++ L+P DQ P TR++
Sbjct: 125 SIPSGFLVYPVSQA---ADITAFKAN-------------LVPVGNDQKPMIEQTREIVRS 168
Query: 260 IG--YHKPALIE----------SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
YH L+E + P L G KMS S N IY++D A ++ K+
Sbjct: 169 FNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKSLGN-GIYLSDDADTVRKKVMS 226
Query: 308 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFL--EDDAELEHIKKEYGAGGMLTGEVKQ 365
+E ++ N+ YL F ED A++E +K+ Y GG+ G+VK
Sbjct: 227 MYTDPNHIKIEDPGQIEGNM----VFHYLDIFARKEDQADIEAMKEHYQRGGL--GDVKT 280
Query: 366 RLAKVLTELVER 377
+ + L +++ER
Sbjct: 281 K--RYLLDILER 290
>sp|P67598|SYW_STRP8 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=trpS PE=3 SV=1
Length = 340
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 128/312 (41%), Gaps = 49/312 (15%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTK-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAR 146
+ TG P+ + LHLGH V + + +LQ+ K + + L D + E Q
Sbjct: 6 ILTGDRPTGK-LHLGHYVGSLKNRVFLQNENKYKMFVFLADQQALTDHAKESELIQESIG 64
Query: 147 ENAKDIIACGFDVTKTFIF--SDFDYVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTG 199
A D ++ G D ++ IF S + +Y N+V +A+ T + GF
Sbjct: 65 NVALDYLSVGLDPKQSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGE 124
Query: 200 EDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 259
G + +P Q + +F ++ L+P DQ P TR++
Sbjct: 125 SIPSGFLVYPVSQA---ADITAFKAN-------------LVPVGNDQKPMIEQTREIVRS 168
Query: 260 IG--YHKPALIE----------SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
YH L+E + P L G KMS S N IY++D A ++ K+
Sbjct: 169 FNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKSLGN-GIYLSDDADTVRKKVMS 226
Query: 308 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFL--EDDAELEHIKKEYGAGGMLTGEVKQ 365
+E ++ N+ YL F ED A++E +K+ Y GG+ G+VK
Sbjct: 227 MYTDPNHIKIEDPGQIEGNM----VFHYLDIFARKEDQADIEAMKEHYQRGGL--GDVKT 280
Query: 366 RLAKVLTELVER 377
+ + L +++ER
Sbjct: 281 K--RYLLDILER 290
>sp|Q5X9A2|SYW_STRP6 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=trpS PE=3 SV=2
Length = 340
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 128/312 (41%), Gaps = 49/312 (15%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTK-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAR 146
+ TG P+ + LHLGH V + + +LQ+ K + + L D + E Q
Sbjct: 6 ILTGDRPTGK-LHLGHYVGSLKNRVFLQNENKYKMFVFLADQQALTDHAKESELIQESIG 64
Query: 147 ENAKDIIACGFDVTKTFIF--SDFDYVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTG 199
A D ++ G D ++ IF S + +Y N+V +A+ T + GF
Sbjct: 65 NVALDYLSVGLDPKQSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGE 124
Query: 200 EDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 259
G + +P Q + +F ++ L+P DQ P TR++
Sbjct: 125 SIPSGFLVYPVSQA---ADITAFKAN-------------LVPVGNDQKPMIEQTREIVRS 168
Query: 260 IG--YHKPALIE----------SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
YH L+E + P L G KMS S N IY++D A ++ K+
Sbjct: 169 FNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKSLGN-GIYLSDDADTVRKKVMS 226
Query: 308 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFL--EDDAELEHIKKEYGAGGMLTGEVKQ 365
+E ++ N+ YL F ED A++E +K+ Y GG+ G+VK
Sbjct: 227 MYTDPNHIKIEDPGQIEGNM----VFHYLDIFARKEDQADIEAMKEHYQRGGL--GDVKT 280
Query: 366 RLAKVLTELVER 377
+ + L +++ER
Sbjct: 281 K--RYLLDILER 290
>sp|P0DG60|SYW_STRP3 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=trpS PE=3 SV=1
Length = 340
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 128/312 (41%), Gaps = 49/312 (15%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTK-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAR 146
+ TG P+ + LHLGH V + + +LQ+ K + + L D + E Q
Sbjct: 6 ILTGDRPTGK-LHLGHYVGSLKNRVFLQNENKYKMFVFLADQQALTDHAKESELIQESIG 64
Query: 147 ENAKDIIACGFDVTKTFIF--SDFDYVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTG 199
A D ++ G D ++ IF S + +Y N+V +A+ T + GF
Sbjct: 65 NVALDYLSVGLDPKQSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGE 124
Query: 200 EDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 259
G + +P Q + +F ++ L+P DQ P TR++
Sbjct: 125 SIPSGFLVYPVSQA---ADITAFKAN-------------LVPVGNDQKPMIEQTREIVRS 168
Query: 260 IG--YHKPALIE----------SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
YH L+E + P L G KMS S N IY++D A ++ K+
Sbjct: 169 FNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKSLGN-GIYLSDDADTVRKKVMS 226
Query: 308 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFL--EDDAELEHIKKEYGAGGMLTGEVKQ 365
+E ++ N+ YL F ED A++E +K+ Y GG+ G+VK
Sbjct: 227 MYTDPNHIKIEDPGQIEGNM----VFHYLDIFARKEDQADIEAMKEHYQRGGL--GDVKT 280
Query: 366 RLAKVLTELVER 377
+ + L +++ER
Sbjct: 281 K--RYLLDILER 290
>sp|Q99XH4|SYW_STRP1 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M1
GN=trpS PE=3 SV=1
Length = 340
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 128/312 (41%), Gaps = 49/312 (15%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTK-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAR 146
+ TG P+ + LHLGH V + + +LQ+ K + + L D + E Q
Sbjct: 6 ILTGDRPTGK-LHLGHYVGSLKNRVFLQNENKYKMFVFLADQQALTDHAKESELIQESIG 64
Query: 147 ENAKDIIACGFDVTKTFIF--SDFDYVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTG 199
A D ++ G D ++ IF S + +Y N+V +A+ T + GF
Sbjct: 65 NVALDYLSVGLDPKQSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGE 124
Query: 200 EDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 259
G + +P Q + +F ++ L+P DQ P TR++
Sbjct: 125 SIPSGFLVYPVSQA---ADITAFKAN-------------LVPVGNDQKPMIEQTREIVRS 168
Query: 260 IG--YHKPALIE----------SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
YH L+E + P L G KMS S N IY++D A ++ K+
Sbjct: 169 FNHTYHTDCLVEPEGIYPENEKAGRLPGLDG-NAKMSKSLGN-GIYLSDDADTVRKKVMS 226
Query: 308 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFL--EDDAELEHIKKEYGAGGMLTGEVKQ 365
+E ++ N+ YL F ED A++E +K+ Y GG+ G+VK
Sbjct: 227 MYTDPNHIKIEDPGQIEGNM----VFHYLDIFARKEDQADIEAMKEHYQIGGL--GDVKT 280
Query: 366 RLAKVLTELVER 377
+ + L +++ER
Sbjct: 281 K--RYLLDILER 290
>sp|Q9HIW5|SYW_THEAC Tryptophan--tRNA ligase OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=trpS PE=3 SV=1
Length = 426
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 106/248 (42%), Gaps = 32/248 (12%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
+++PW SSS DY++L +FG ++ H RR + R ++
Sbjct: 1 MINPW--SSSDFFDYERLKREFGIGDMNVPF-----------DHFLFRRHLILGQRSIDY 47
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
I A + KF + TG PS E +HLG+ + Q + I + D E +
Sbjct: 48 IDYALKHHMKFNVMTGLMPSGE-MHLGNKSAIDQVIFFQ-KLGGRVSIAVADLESYSTRG 105
Query: 136 LSVEESQRLAREN-AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 194
+S+E ++ +A E + IA G + + + S V Y + +++ +
Sbjct: 106 ISLERAREVAIEKYILNYIAMGLEPCEIYFQSRNSDVQFLAYM----LGNRTNMSELRSL 161
Query: 195 FGFTGEDHIGKVSFPPVQ--EMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRM 252
+GFT + ++ P +Q ++++ + + P ++P DQDP+ R+
Sbjct: 162 YGFTDTHDLLHINAPLIQAADVLHTQMKKYGGPAP----------TVVPVGFDQDPHLRL 211
Query: 253 TRDVAPRI 260
RD+A R+
Sbjct: 212 MRDLAKRM 219
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 256 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 315
+AP Y K L+G GKMS+S P+S I + D K + KI +GG++
Sbjct: 297 IAPSATYQK-------LMKGLKG--GKMSSSVPDSLISLNDDPKEARRKIMA-GMTGGRD 346
Query: 316 SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTG----EVKQRLAKVL 371
+ E R+LG + ++ ++DD ++ + + G + G E+ R+A L
Sbjct: 347 TEEEQRRLGGEPDRCPIFDLYNYEIDDDKHVKEVYDDCRNGKRMCGFCKREIADRMASWL 406
Query: 372 TELVERHQVARAAVT 386
++L ++ + AR ++
Sbjct: 407 SDLSKKREEAREKLS 421
>sp|Q2NHE1|SYY_METST Tyrosine--tRNA ligase OS=Methanosphaera stadtmanae (strain DSM
3091) GN=tyrS PE=3 SV=1
Length = 318
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 91/222 (40%), Gaps = 24/222 (10%)
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
Y G PS + +HLGH + K LQDA FK+ + I + + +++E +A+
Sbjct: 35 YVGFEPSGK-VHLGHALTIKKMKTLQDAGFKITIFI--ANLHAYLNNKGTLDELNEVAKY 91
Query: 148 NAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVS 207
N K A G FI D + + + K AK T + + + VS
Sbjct: 92 NIKCFKALGLSEDTNFILGS-DRMTPEYITEVFKAAKLTTIQR--------AQRSMALVS 142
Query: 208 FPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPAL 267
++ P + H + ++Q + R++ PR+GY P
Sbjct: 143 RNETHDVAQTLYPIMQALDIHDLDAD-----IAVGGMEQRKIHMLAREILPRLGYRPPVC 197
Query: 268 IESSFFPALQGETG--KMSASDPNSAIYVTDSAKAIKNKINK 307
I P + G G KMS+S N I + D+ K IKNKINK
Sbjct: 198 IH---IPLIHGTDGSDKMSSSKGN-FIAIDDTPKEIKNKINK 235
>sp|Q8TXZ2|SYY_METKA Tyrosine--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=tyrS PE=3 SV=1
Length = 324
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 22/231 (9%)
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
Y G PS + +HLGH + LQ+A F V +I L D + + ++EE + LA
Sbjct: 36 YVGFEPSGK-VHLGHKLVIDKMIDLQEAGFHV--IILLADLHAYLNEKGTLEEVRELADY 92
Query: 148 NAKDIIACGFDVTKT-FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKV 206
N + +A G D KT F+ + + ++ ++A+ T + D I +
Sbjct: 93 NRRCFLAMGLDPNKTEFVLGSEFQLDEDYALDVYRMARHTTMRR-----ARRSMDMIARS 147
Query: 207 S-FPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP 265
PPV +++Y + + HL L ++Q + RDV P++GY P
Sbjct: 148 EENPPVSQVVYPLMQAL--DIVHLNVD------LAVGGLEQRKIHMLARDVLPKLGYDSP 199
Query: 266 ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQES 316
+ + L G+ KMS+S N+ I V D + I+ K+ K A+ +E+
Sbjct: 200 TCLHTPIIHGLDGDE-KMSSSK-NNFIAVDDEPEVIREKLRK-AYCPAREA 247
>sp|A6URQ1|SYY_METVS Tyrosine--tRNA ligase OS=Methanococcus vannielii (strain SB / ATCC
35089 / DSM 1224) GN=tyrS PE=3 SV=1
Length = 319
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 141/323 (43%), Gaps = 57/323 (17%)
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEK 130
++N++L ++GEK Y G PS + +HLGH + LQ A FK+ +I L D
Sbjct: 27 EMNELLK--KEGEKI-AYIGFEPSGK-IHLGHYLQIKKMIDLQKAGFKI--IILLADLHA 80
Query: 131 CMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN------MVKVAK 184
+ + ++EE + L EN K + G + +D+ Y G F N + K+A
Sbjct: 81 YLNQKGTMEEIRALGEENKKAFESMG-------LIADYVY-GSEFQLNEEYTIDVYKLAL 132
Query: 185 CVTYNKV---VGIFGFTGED-HIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLI 240
T N+ + + E+ + V +P +Q + HL +
Sbjct: 133 ATTLNRAKRSMEVIAREDENPKVASVVYPLMQ-----------------VNDIKHLNVDV 175
Query: 241 PCA-IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 299
++Q ++R++ P +GY P I + L GE GKMS+S N I V D
Sbjct: 176 AVGGMEQRKIHMLSREILPNMGYKAPICIHNPILTGLDGE-GKMSSSKGN-LIAVDDDEV 233
Query: 300 AIKNKINKYAFSG-----GQESVELHR-KLGANLEVDIPVKY-LSFFLEDDAELEHIKKE 352
IKNK+ K AF G +E+ R L + ++ P KY + L + ELE E
Sbjct: 234 TIKNKL-KNAFCPMKEVFGNPVLEIARYYLDYPVNINRPEKYGGNLVLNNYGELETAYIE 292
Query: 353 YGAGGMLTGEVKQRLAKVLTELV 375
G+ +VK +A+ L E++
Sbjct: 293 ----GLHPMDVKTLVAEQLIEIL 311
>sp|A3CYG9|SYY_METMJ Tyrosine--tRNA ligase OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=tyrS PE=3 SV=1
Length = 315
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 22/222 (9%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLAR 146
+YTG PS E +HLGH+V LQ A F+V ++I D + + ++EE + A
Sbjct: 31 VYTGYEPSGE-IHLGHMVTVNKLMDLQQAGFEVTVLI--ADLHAFLNRKGTMEEIRETAE 87
Query: 147 ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK- 205
N + G + SD + + ++++++ +T N+ D +G+
Sbjct: 88 YNRRCFEGLGLRGANYVLGSDVQ-LTPEYELAVLELSQAITLNR-----AKRSMDEVGRQ 141
Query: 206 VSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP 265
+ P V +M+Y + + + + IDQ + R+ P IGY P
Sbjct: 142 MDNPTVSQMVYPIMQMVDIATLGVDAAVG--------GIDQRKIHMLAREHLPSIGYPAP 193
Query: 266 ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
I + P + G GK +S + I V DS + IK K+ K
Sbjct: 194 VCIHT---PIINGLDGKKMSSSAGNVISVADSEEDIKKKMKK 232
>sp|P36421|SYYC_YEAST Tyrosine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TYS1 PE=1 SV=3
Length = 394
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 17/144 (11%)
Query: 198 TGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHL---FSGKDHLRCLIPCAIDQDPYFRMTR 254
G D + +V+ P + +IY + + F + F G +DQ F +
Sbjct: 152 AGADVVKQVANPLLSGLIYPLMQALDEQFLDVDCQFGG-----------VDQRKIFVLAE 200
Query: 255 DVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ 314
+ P +GY K A + + P L + GKMSASDPNS I + + K +K KIN S G
Sbjct: 201 ENLPSLGYKKRAHLMNPMVPGL-AQGGKMSASDPNSKIDLLEEPKQVKKKINSAFCSPG- 258
Query: 315 ESVELHRKLGANLEVDIPVKYLSF 338
+VE + L V P++ L F
Sbjct: 259 -NVEENGLLSFVQYVIAPIQELKF 281
>sp|A2SU89|SYY_METLZ Tyrosine--tRNA ligase OS=Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z) GN=tyrS PE=3 SV=1
Length = 317
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 26/224 (11%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLAR 146
+YTG PS E +HLGHLV ++ A F V V+ + + + + + E+ + LA
Sbjct: 31 VYTGYEPSGE-IHLGHLVTINKLMDMKAAGFDV--VVLIANLHAYLNRKGTFEQIKELAD 87
Query: 147 ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK- 205
N I A G + + +D + + ++ + + +T N+ D +G+
Sbjct: 88 YNKACIEAVGLKGAEFVLGTDVQ-LTPKYQTEVLTLCQQITLNRAT-----RSMDEVGRA 141
Query: 206 VSFPPVQEMIYKA--VPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH 263
+ P V +M+Y V P+ G IDQ + R+ P +GY
Sbjct: 142 MDNPMVSQMVYPVMQVVDIPTLNVDAAVG----------GIDQRKIHMLAREHLPTLGYK 191
Query: 264 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
P I + L GE KMS+S N + V DS + IK K+ K
Sbjct: 192 PPVCIHTPIVNGLDGE--KMSSSKGN-VVSVADSPEEIKKKMKK 232
>sp|O27795|SYY_METTH Tyrosine--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=tyrS PE=3 SV=1
Length = 319
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 102/243 (41%), Gaps = 36/243 (14%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMW 133
+++D +K E +YTG PS +HLGH + + LQDA F+V ++ L D +
Sbjct: 20 ELMDVLKKDEPV-VYTGYEPSGR-IHLGHALTVRKLRELQDAGFRVKIL--LADYHAYLN 75
Query: 134 KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY----N 189
S+E + LA N K +A G +T + Y ++V +T
Sbjct: 76 GKGSMERIRELADYNQKCFLALGLSPERTEFILGSSFQTEPEYTDLVYRLALITTLLRAK 135
Query: 190 KVVGIFGFTGEDH-IGKVSFPPVQ--EMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 246
+ + DH + +V +P +Q +M+Y V + ++Q
Sbjct: 136 RSMAQITRESRDHKVAEVIYPLMQVIDMVYLGVD------------------VALGGMEQ 177
Query: 247 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETG--KMSASDPNSAIYVTDSAKAIKNK 304
+ R+ PR+G+ P I + P L G G KMS+S N I V DS I+ K
Sbjct: 178 RKIHMLARENLPRLGFDAPVCIHT---PLLHGTDGSEKMSSSKGN-FIAVDDSPDEIREK 233
Query: 305 INK 307
+ K
Sbjct: 234 VKK 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,567,054
Number of Sequences: 539616
Number of extensions: 6777928
Number of successful extensions: 20481
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 19984
Number of HSP's gapped (non-prelim): 456
length of query: 404
length of database: 191,569,459
effective HSP length: 120
effective length of query: 284
effective length of database: 126,815,539
effective search space: 36015613076
effective search space used: 36015613076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)