Query 015582
Match_columns 404
No_of_seqs 236 out of 1749
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2145 Cytoplasmic tryptophan 100.0 2E-119 4E-124 849.3 28.2 389 8-401 6-397 (397)
2 PLN02486 aminoacyl-tRNA ligase 100.0 1E-105 2E-110 807.2 34.9 381 15-400 1-383 (383)
3 PRK12285 tryptophanyl-tRNA syn 100.0 8.3E-93 1.8E-97 712.0 32.0 361 13-399 2-367 (368)
4 COG0180 TrpS Tryptophanyl-tRNA 100.0 5.6E-68 1.2E-72 516.9 25.7 291 83-397 3-311 (314)
5 TIGR00233 trpS tryptophanyl-tR 100.0 1.9E-63 4.1E-68 494.3 26.2 293 84-397 1-307 (328)
6 PRK08560 tyrosyl-tRNA syntheta 100.0 3.2E-63 7E-68 493.4 25.0 297 59-386 5-324 (329)
7 PRK00927 tryptophanyl-tRNA syn 100.0 3.1E-62 6.6E-67 487.0 23.1 286 86-397 2-309 (333)
8 PRK12282 tryptophanyl-tRNA syn 100.0 1.2E-61 2.7E-66 481.7 23.7 287 86-397 3-308 (333)
9 cd00806 TrpRS_core catalytic c 100.0 1E-60 2.3E-65 465.7 23.5 264 87-374 1-280 (280)
10 PRK12556 tryptophanyl-tRNA syn 100.0 2.8E-59 6.1E-64 464.4 25.1 283 86-397 4-310 (332)
11 PRK12283 tryptophanyl-tRNA syn 100.0 7E-58 1.5E-62 458.6 25.0 285 87-397 4-375 (398)
12 PTZ00126 tyrosyl-tRNA syntheta 100.0 3.2E-57 6.8E-62 456.5 27.0 296 59-385 41-366 (383)
13 PLN02886 aminoacyl-tRNA ligase 100.0 2.4E-57 5.2E-62 455.1 24.0 283 86-397 47-363 (389)
14 PRK13354 tyrosyl-tRNA syntheta 100.0 2.4E-56 5.2E-61 454.7 28.2 290 60-387 8-318 (410)
15 PRK12284 tryptophanyl-tRNA syn 100.0 2.8E-56 6.2E-61 450.3 25.6 283 85-397 2-310 (431)
16 PRK05912 tyrosyl-tRNA syntheta 100.0 3.7E-55 8.1E-60 446.2 27.0 290 59-387 8-320 (408)
17 cd00805 TyrRS_core catalytic c 100.0 3.3E-55 7.3E-60 425.0 20.1 249 87-374 2-269 (269)
18 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.6E-53 3.5E-58 452.8 27.7 308 59-386 7-341 (682)
19 PF00579 tRNA-synt_1b: tRNA sy 100.0 3.9E-55 8.4E-60 429.2 13.1 273 82-376 2-292 (292)
20 cd00395 Tyr_Trp_RS_core cataly 100.0 1.8E-53 3.8E-58 413.4 20.4 251 87-374 1-273 (273)
21 KOG2713 Mitochondrial tryptoph 100.0 9E-49 1.9E-53 369.3 19.9 286 85-397 13-323 (347)
22 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 7.8E-47 1.7E-51 381.6 22.2 281 59-384 6-301 (377)
23 COG0162 TyrS Tyrosyl-tRNA synt 100.0 1.8E-45 4E-50 370.6 24.7 299 59-397 7-320 (401)
24 KOG2144 Tyrosyl-tRNA synthetas 100.0 3.3E-42 7.2E-47 325.4 20.3 300 59-387 10-336 (360)
25 KOG2623 Tyrosyl-tRNA synthetas 100.0 8.6E-40 1.9E-44 319.8 13.0 290 59-382 34-356 (467)
26 PTZ00348 tyrosyl-tRNA syntheta 100.0 2E-34 4.4E-39 307.0 20.5 243 111-383 400-661 (682)
27 cd00802 class_I_aaRS_core cata 99.3 4.2E-12 9.1E-17 111.8 8.5 65 208-287 78-143 (143)
28 cd00808 GluRS_core catalytic c 99.2 7.8E-11 1.7E-15 112.5 11.2 155 93-292 9-172 (239)
29 PRK00750 lysK lysyl-tRNA synth 99.0 5.8E-09 1.3E-13 110.1 17.2 207 74-296 13-293 (510)
30 cd00674 LysRS_core_class_I cat 98.9 3.1E-08 6.8E-13 99.8 14.7 211 74-296 9-288 (353)
31 cd00418 GlxRS_core catalytic c 98.8 5.5E-08 1.2E-12 92.4 11.2 152 93-290 9-161 (230)
32 TIGR00467 lysS_arch lysyl-tRNA 98.4 4.4E-06 9.5E-11 88.3 13.2 203 84-296 18-287 (515)
33 cd09287 GluRS_non_core catalyt 97.8 0.0002 4.3E-09 68.7 10.8 165 90-288 6-172 (240)
34 PF01921 tRNA-synt_1f: tRNA sy 97.8 8.2E-05 1.8E-09 75.0 8.3 202 83-302 22-306 (360)
35 TIGR00464 gltX_bact glutamyl-t 97.7 0.0022 4.8E-08 67.4 17.7 63 239-305 200-268 (470)
36 COG1384 LysS Lysyl-tRNA synthe 97.7 0.00099 2.1E-08 69.5 14.4 94 84-181 19-142 (521)
37 PRK14895 gltX glutamyl-tRNA sy 97.6 0.0029 6.2E-08 66.9 17.9 116 240-372 200-331 (513)
38 cd00807 GlnRS_core catalytic c 97.5 0.00073 1.6E-08 64.7 10.2 159 93-289 9-171 (238)
39 PRK01611 argS arginyl-tRNA syn 97.4 0.00056 1.2E-08 72.6 8.6 62 238-300 275-339 (507)
40 PRK05710 glutamyl-Q tRNA(Asp) 97.3 0.0024 5.2E-08 63.3 12.0 69 93-171 13-82 (299)
41 PRK04156 gltX glutamyl-tRNA sy 97.3 0.0038 8.3E-08 66.8 14.1 79 84-171 100-179 (567)
42 PRK01406 gltX glutamyl-tRNA sy 97.1 0.011 2.4E-07 62.3 15.2 63 239-305 210-278 (476)
43 cd00672 CysRS_core catalytic c 97.1 0.004 8.6E-08 58.8 10.5 76 83-159 19-105 (213)
44 PLN02627 glutamyl-tRNA synthet 97.0 0.049 1.1E-06 58.0 18.2 75 88-171 46-130 (535)
45 TIGR03838 queuosine_YadB gluta 96.9 0.0098 2.1E-07 58.2 11.6 69 93-171 8-77 (272)
46 PLN03233 putative glutamate-tR 96.9 0.0085 1.8E-07 63.5 11.7 73 88-171 12-87 (523)
47 PRK12410 glutamylglutaminyl-tR 96.9 0.046 1E-06 56.9 16.7 68 93-171 7-75 (433)
48 PTZ00402 glutamyl-tRNA synthet 96.8 0.017 3.6E-07 62.1 13.0 74 88-171 53-129 (601)
49 cd00671 ArgRS_core catalytic c 96.6 0.008 1.7E-07 56.4 8.2 46 241-288 164-212 (212)
50 PLN02907 glutamate-tRNA ligase 96.6 0.026 5.6E-07 62.4 13.2 73 88-171 214-289 (722)
51 PLN02859 glutamine-tRNA ligase 96.6 0.071 1.5E-06 59.0 16.3 88 71-171 249-340 (788)
52 COG0008 GlnS Glutamyl- and glu 96.5 0.02 4.4E-07 60.1 11.1 74 88-171 10-86 (472)
53 PRK00260 cysS cysteinyl-tRNA s 96.4 0.043 9.3E-07 57.7 12.8 75 85-160 23-110 (463)
54 COG0215 CysS Cysteinyl-tRNA sy 96.2 0.033 7.2E-07 58.0 10.6 72 86-158 23-106 (464)
55 PRK12558 glutamyl-tRNA synthet 96.1 0.048 1E-06 57.0 11.3 68 93-171 10-78 (445)
56 TIGR00234 tyrS tyrosyl-tRNA sy 96.1 0.0039 8.4E-08 63.8 3.1 63 251-315 196-263 (377)
57 TIGR00463 gltX_arch glutamyl-t 93.2 0.21 4.5E-06 53.6 6.9 73 88-171 94-169 (560)
58 cd00668 Ile_Leu_Val_MetRS_core 92.9 0.084 1.8E-06 52.4 3.2 55 239-296 229-286 (312)
59 PRK05347 glutaminyl-tRNA synth 92.7 0.57 1.2E-05 50.2 9.2 86 76-171 18-106 (554)
60 PF00749 tRNA-synt_1c: tRNA sy 92.1 0.31 6.6E-06 48.8 6.1 69 93-171 9-78 (314)
61 COG0162 TyrS Tyrosyl-tRNA synt 92.0 0.21 4.6E-06 51.5 4.8 102 280-384 231-356 (401)
62 PTZ00437 glutaminyl-tRNA synth 91.7 0.39 8.4E-06 51.6 6.6 77 85-172 51-128 (574)
63 TIGR00440 glnS glutaminyl-tRNA 91.5 0.49 1.1E-05 50.4 7.1 69 93-171 8-77 (522)
64 PRK14703 glutaminyl-tRNA synth 90.7 1.2 2.5E-05 49.8 9.3 86 76-171 20-108 (771)
65 cd00818 IleRS_core catalytic c 90.6 0.23 4.9E-06 50.1 3.4 54 239-296 255-312 (338)
66 KOG0432 Valyl-tRNA synthetase 90.2 0.53 1.1E-05 52.4 5.9 51 239-293 549-603 (995)
67 PRK00133 metG methionyl-tRNA s 90.1 0.86 1.9E-05 50.2 7.7 76 84-160 2-89 (673)
68 cd00817 ValRS_core catalytic c 88.6 0.32 6.9E-06 49.9 2.8 55 239-296 299-356 (382)
69 TIGR00456 argS arginyl-tRNA sy 88.6 0.39 8.5E-06 51.8 3.6 58 239-300 331-389 (566)
70 cd02156 nt_trans nucleotidyl t 88.5 1.3 2.8E-05 36.6 5.9 64 88-158 2-65 (105)
71 PLN02224 methionine-tRNA ligas 88.1 1.1 2.3E-05 49.0 6.5 93 64-160 52-156 (616)
72 cd00812 LeuRS_core catalytic c 87.8 0.27 5.9E-06 48.9 1.7 54 239-296 227-288 (314)
73 KOG1147 Glutamyl-tRNA syntheta 87.3 1.4 3.1E-05 46.7 6.6 65 91-163 206-270 (712)
74 PRK00390 leuS leucyl-tRNA synt 86.2 1.8 3.8E-05 48.8 7.1 76 83-160 31-119 (805)
75 PRK13804 ileS isoleucyl-tRNA s 85.7 0.7 1.5E-05 53.0 3.7 54 239-295 586-642 (961)
76 PRK11893 methionyl-tRNA synthe 85.6 0.46 9.9E-06 50.3 2.0 54 239-296 257-312 (511)
77 TIGR00392 ileS isoleucyl-tRNA 85.0 0.67 1.4E-05 52.5 3.1 55 239-296 567-624 (861)
78 PRK05743 ileS isoleucyl-tRNA s 84.8 0.73 1.6E-05 52.6 3.3 52 239-294 548-603 (912)
79 PF00133 tRNA-synt_1: tRNA syn 84.5 0.69 1.5E-05 50.3 2.8 53 239-294 517-572 (601)
80 COG0143 MetG Methionyl-tRNA sy 83.4 2.8 6.1E-05 45.2 6.8 74 84-158 5-90 (558)
81 PF09334 tRNA-synt_1g: tRNA sy 82.5 2.4 5.3E-05 43.6 5.7 54 239-296 285-340 (391)
82 COG0060 IleS Isoleucyl-tRNA sy 82.4 1.6 3.5E-05 49.5 4.7 59 239-304 558-619 (933)
83 PRK12268 methionyl-tRNA synthe 81.8 3.5 7.5E-05 44.3 6.8 54 239-296 290-347 (556)
84 cd00814 MetRS_core catalytic c 81.1 0.95 2E-05 45.1 2.1 54 239-296 238-293 (319)
85 PLN02286 arginine-tRNA ligase 80.5 4.3 9.4E-05 44.0 7.0 62 238-302 330-397 (576)
86 COG0018 ArgS Arginyl-tRNA synt 80.0 6.9 0.00015 42.5 8.3 67 238-305 337-405 (577)
87 PRK12451 arginyl-tRNA syntheta 79.1 2.2 4.7E-05 46.1 4.2 58 239-300 328-388 (562)
88 TIGR00422 valS valyl-tRNA synt 78.9 1.6 3.5E-05 49.5 3.3 54 239-296 481-538 (861)
89 PRK06039 ileS isoleucyl-tRNA s 78.6 1.7 3.6E-05 50.1 3.3 55 239-296 548-605 (975)
90 PLN02843 isoleucyl-tRNA synthe 78.5 1.9 4.1E-05 49.6 3.7 52 239-294 567-622 (974)
91 PRK05729 valS valyl-tRNA synth 78.0 1.8 3.9E-05 49.2 3.3 54 239-296 476-533 (874)
92 PRK13208 valS valyl-tRNA synth 77.9 1.7 3.7E-05 48.9 3.1 54 239-296 489-546 (800)
93 PRK00133 metG methionyl-tRNA s 77.7 11 0.00023 41.7 9.1 51 240-296 288-342 (673)
94 COG0495 LeuS Leucyl-tRNA synth 77.6 4 8.7E-05 45.8 5.7 93 59-160 16-121 (814)
95 TIGR00398 metG methionyl-tRNA 77.0 1.7 3.7E-05 46.3 2.6 54 239-296 285-340 (530)
96 TIGR00396 leuS_bact leucyl-tRN 76.8 15 0.00033 41.7 10.1 92 60-159 13-115 (842)
97 PTZ00399 cysteinyl-tRNA-synthe 76.5 9.2 0.0002 42.1 8.1 75 84-159 59-147 (651)
98 PRK12267 methionyl-tRNA synthe 76.4 1.3 2.9E-05 48.5 1.6 54 239-296 257-312 (648)
99 PRK11893 methionyl-tRNA synthe 76.2 7.1 0.00015 41.3 7.0 65 94-160 12-88 (511)
100 PRK14900 valS valyl-tRNA synth 76.1 2.3 4.9E-05 49.4 3.5 54 239-296 494-551 (1052)
101 PRK12268 methionyl-tRNA synthe 75.7 1.6 3.5E-05 46.9 2.0 72 88-160 6-91 (556)
102 TIGR00398 metG methionyl-tRNA 75.0 7 0.00015 41.7 6.6 66 94-160 10-86 (530)
103 PF09334 tRNA-synt_1g: tRNA sy 74.9 1 2.2E-05 46.4 0.2 36 94-131 10-50 (391)
104 PRK12300 leuS leucyl-tRNA synt 74.8 17 0.00037 41.6 10.0 53 239-296 533-590 (897)
105 PLN02946 cysteine-tRNA ligase 74.6 12 0.00027 40.4 8.2 72 85-158 80-164 (557)
106 PLN02381 valyl-tRNA synthetase 74.5 2.5 5.5E-05 49.1 3.3 54 239-296 611-668 (1066)
107 cd00814 MetRS_core catalytic c 74.1 8.1 0.00018 38.4 6.4 65 95-160 12-87 (319)
108 PLN02959 aminoacyl-tRNA ligase 73.8 2.8 6.1E-05 48.8 3.4 54 239-296 674-731 (1084)
109 PRK12418 cysteinyl-tRNA synthe 73.6 2.8 6.1E-05 43.2 3.0 71 85-157 9-92 (384)
110 TIGR00435 cysS cysteinyl-tRNA 73.2 11 0.00023 39.9 7.4 77 82-160 19-107 (465)
111 PLN02943 aminoacyl-tRNA ligase 72.9 2.3 4.9E-05 48.9 2.4 54 239-296 539-596 (958)
112 PRK12267 methionyl-tRNA synthe 72.8 12 0.00027 41.0 8.0 76 84-160 4-91 (648)
113 PLN02563 aminoacyl-tRNA ligase 72.7 2 4.3E-05 49.3 1.9 14 282-296 723-736 (963)
114 PF06543 Lac_bphage_repr: Lact 72.4 3.1 6.8E-05 29.7 2.1 31 26-57 16-46 (49)
115 PRK14536 cysS cysteinyl-tRNA s 72.0 12 0.00026 39.8 7.4 74 85-160 23-119 (490)
116 cd00668 Ile_Leu_Val_MetRS_core 71.6 8.3 0.00018 38.1 5.8 35 94-130 11-50 (312)
117 PF01406 tRNA-synt_1e: tRNA sy 70.2 14 0.0003 36.8 6.9 74 84-159 7-93 (300)
118 cd00812 LeuRS_core catalytic c 70.1 9.1 0.0002 38.0 5.7 65 94-160 11-87 (314)
119 PTZ00427 isoleucine-tRNA ligas 69.9 4.7 0.0001 47.4 4.1 52 239-293 676-730 (1205)
120 TIGR03447 mycothiol_MshC cyste 69.6 3.8 8.2E-05 42.6 2.9 69 88-158 40-120 (411)
121 PRK12418 cysteinyl-tRNA synthe 69.5 16 0.00036 37.6 7.5 27 267-296 248-274 (384)
122 TIGR00395 leuS_arch leucyl-tRN 69.1 3.1 6.7E-05 47.7 2.4 53 239-296 576-633 (938)
123 PLN02224 methionine-tRNA ligas 68.2 3.7 7.9E-05 44.9 2.6 53 240-296 325-379 (616)
124 KOG0435 Leucyl-tRNA synthetase 67.8 13 0.00029 40.8 6.5 63 59-131 40-106 (876)
125 PLN02882 aminoacyl-tRNA ligase 67.5 4.7 0.0001 47.3 3.5 51 239-293 570-624 (1159)
126 TIGR00435 cysS cysteinyl-tRNA 67.2 4.3 9.2E-05 42.9 2.8 53 240-296 223-278 (465)
127 PTZ00419 valyl-tRNA synthetase 66.9 4.1 8.9E-05 47.0 2.8 52 239-294 541-596 (995)
128 PRK14534 cysS cysteinyl-tRNA s 66.4 20 0.00043 38.1 7.5 74 85-160 21-117 (481)
129 PF01406 tRNA-synt_1e: tRNA sy 64.4 2.6 5.7E-05 41.9 0.5 50 242-296 212-265 (300)
130 cd00818 IleRS_core catalytic c 63.5 20 0.00043 36.1 6.7 44 86-130 3-51 (338)
131 COG0143 MetG Methionyl-tRNA sy 63.4 4.9 0.00011 43.4 2.4 53 241-296 293-346 (558)
132 TIGR00396 leuS_bact leucyl-tRN 63.2 3.1 6.7E-05 47.2 0.9 14 282-296 604-617 (842)
133 PLN02610 probable methionyl-tR 63.1 24 0.00051 40.0 7.8 76 84-160 17-105 (801)
134 TIGR03447 mycothiol_MshC cyste 62.3 27 0.00059 36.3 7.5 26 267-295 275-300 (411)
135 KOG0437 Leucyl-tRNA synthetase 61.9 23 0.00051 39.4 7.1 34 352-386 777-810 (1080)
136 PF00750 tRNA-synt_1d: tRNA sy 60.6 3.8 8.1E-05 41.6 0.9 62 238-302 241-307 (354)
137 COG0525 ValS Valyl-tRNA synthe 60.2 11 0.00024 42.7 4.4 52 239-294 481-536 (877)
138 cd00817 ValRS_core catalytic c 59.8 26 0.00056 35.9 6.9 43 86-129 3-50 (382)
139 KOG1148 Glutaminyl-tRNA synthe 59.3 34 0.00073 37.2 7.5 97 88-197 249-356 (764)
140 COG0495 LeuS Leucyl-tRNA synth 57.9 80 0.0017 35.9 10.6 24 270-296 569-592 (814)
141 PLN02563 aminoacyl-tRNA ligase 56.6 30 0.00065 40.0 7.3 76 83-158 109-196 (963)
142 PLN02610 probable methionyl-tR 56.0 6.8 0.00015 44.2 2.0 54 239-296 304-361 (801)
143 PRK14535 cysS cysteinyl-tRNA s 54.5 42 0.00091 37.2 7.6 75 84-160 247-334 (699)
144 PRK00390 leuS leucyl-tRNA synt 53.7 6.6 0.00014 44.3 1.5 49 239-296 526-583 (805)
145 cd02168 NMNAT_Nudix Nicotinami 52.7 58 0.0013 29.8 7.3 69 88-166 3-73 (181)
146 PF00133 tRNA-synt_1: tRNA syn 52.6 46 0.001 36.3 7.7 44 82-126 21-68 (601)
147 PRK14536 cysS cysteinyl-tRNA s 51.1 9.7 0.00021 40.5 2.1 26 268-296 267-292 (490)
148 COG0414 PanC Panthothenate syn 49.2 1.7E+02 0.0036 29.0 10.0 48 241-296 148-195 (285)
149 PTZ00399 cysteinyl-tRNA-synthe 49.2 8.5 0.00018 42.4 1.4 25 268-296 304-328 (651)
150 PLN02946 cysteine-tRNA ligase 48.8 6.7 0.00014 42.4 0.5 25 268-296 312-336 (557)
151 KOG0433 Isoleucyl-tRNA synthet 48.0 16 0.00035 40.5 3.2 57 239-304 569-630 (937)
152 PRK13208 valS valyl-tRNA synth 47.4 24 0.00053 39.8 4.7 61 60-129 22-86 (800)
153 PRK14535 cysS cysteinyl-tRNA s 46.2 8 0.00017 42.7 0.6 25 268-296 497-521 (699)
154 TIGR00422 valS valyl-tRNA synt 45.0 42 0.00092 38.2 6.2 61 60-129 17-81 (861)
155 KOG2007 Cysteinyl-tRNA synthet 41.3 24 0.00051 37.6 3.1 47 82-129 52-105 (586)
156 PRK14534 cysS cysteinyl-tRNA s 41.0 14 0.00031 39.2 1.4 24 269-296 269-292 (481)
157 PLN02943 aminoacyl-tRNA ligase 37.9 44 0.00096 38.6 4.9 61 60-129 72-136 (958)
158 PLN02381 valyl-tRNA synthetase 37.6 48 0.001 38.8 5.1 62 59-129 111-176 (1066)
159 cd02166 NMNAT_Archaea Nicotina 33.7 3.4E+02 0.0075 24.1 9.3 67 97-170 9-77 (163)
160 COG5309 Exo-beta-1,3-glucanase 33.4 3E+02 0.0066 27.2 9.0 115 38-160 57-173 (305)
161 TIGR00456 argS arginyl-tRNA sy 32.9 44 0.00095 36.2 3.7 42 87-130 116-163 (566)
162 PLN02660 pantoate--beta-alanin 31.8 4E+02 0.0086 26.4 9.8 56 242-305 153-208 (284)
163 KOG1149 Glutamyl-tRNA syntheta 31.6 73 0.0016 33.5 4.7 40 87-128 35-75 (524)
164 PLN02843 isoleucyl-tRNA synthe 30.9 1.1E+02 0.0025 35.4 6.7 59 60-126 15-77 (974)
165 COG0525 ValS Valyl-tRNA synthe 30.4 38 0.00083 38.5 2.7 36 94-130 44-82 (877)
166 PF00749 tRNA-synt_1c: tRNA sy 30.2 45 0.00097 33.3 3.0 52 238-291 201-252 (314)
167 PRK05729 valS valyl-tRNA synth 29.3 67 0.0015 36.7 4.5 60 60-129 21-84 (874)
168 PF00750 tRNA-synt_1d: tRNA sy 29.3 60 0.0013 32.9 3.8 41 89-130 26-71 (354)
169 PRK14900 valS valyl-tRNA synth 29.1 49 0.0011 38.7 3.4 63 59-129 30-96 (1052)
170 PRK13793 nicotinamide-nucleoti 27.8 3.7E+02 0.008 25.1 8.4 58 85-149 5-64 (196)
171 PRK07217 replication factor A; 27.0 1.9E+02 0.0041 29.1 6.6 51 344-395 6-59 (311)
172 COG0018 ArgS Arginyl-tRNA synt 26.8 66 0.0014 35.1 3.7 40 89-130 123-168 (577)
173 PTZ00419 valyl-tRNA synthetase 26.2 66 0.0014 37.4 3.8 65 60-129 40-108 (995)
174 KOG0434 Isoleucyl-tRNA synthet 24.0 85 0.0018 35.0 3.8 75 198-289 531-608 (1070)
175 PRK05379 bifunctional nicotina 23.0 3.3E+02 0.0071 27.4 7.7 71 84-166 6-78 (340)
176 TIGR00125 cyt_tran_rel cytidyl 22.3 1.1E+02 0.0024 22.2 3.2 27 97-127 9-35 (66)
177 COG1219 ClpX ATP-dependent pro 21.6 1.5E+02 0.0031 30.4 4.6 63 92-167 103-169 (408)
178 TIGR03586 PseI pseudaminic aci 21.0 1.4E+02 0.003 30.1 4.5 97 13-127 91-200 (327)
179 PRK12451 arginyl-tRNA syntheta 20.4 1E+02 0.0022 33.5 3.6 40 89-130 119-164 (562)
No 1
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-119 Score=849.35 Aligned_cols=389 Identities=66% Similarity=1.143 Sum_probs=381.7
Q ss_pred hhhhccCcccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCc
Q 015582 8 QREEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEK 85 (404)
Q Consensus 8 ~~~~~~~~~~~pw~~~~--~~~~dy~~l~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~ 85 (404)
..++.+|++||||+|++ ..+|||||||.+|||++|++++++|++++||+++|+|+|||+||+|||++.||+++++|+|
T Consensus 6 ~~~~~~Eq~vtPW~V~~~~~~~IDYdklI~~FG~~k~deeli~R~ek~tg~~~h~flRrg~fFshRDf~~iLd~~eq~kp 85 (397)
T KOG2145|consen 6 GATEVEEQRVTPWDVETSSADGIDYDKLIVQFGCSKIDEELIDRFEKLTGKPPHHFLRRGIFFSHRDFNLILDAYEQGKP 85 (397)
T ss_pred cccchhhcccCcceeecccCCCccHHHHHHHhCcccCCHHHHHHHHHhcCCCchHHhhhcceeecccHHHHHHHHHcCCc
Confidence 34677899999999977 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 015582 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (404)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~ 165 (404)
||+|||++||+++|||||++|+++++|||++|++|++|+++|+++++|+.++.+++.++++||+++|+|+||||++|+||
T Consensus 86 FyLYTGRGpSS~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfIF 165 (397)
T KOG2145|consen 86 FYLYTGRGPSSESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFIF 165 (397)
T ss_pred eEEEeCCCCCccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCccCc-cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCccccccccc
Q 015582 166 SDFDYVG-GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAI 244 (404)
Q Consensus 166 ~~s~~~~-~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~ 244 (404)
+|.++++ +.+|.++++|++++|.|+++++|||+++.++|++.||..| |||||++|||.|+..+.|++|+|||++
T Consensus 166 sn~~y~g~~~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~q-----aap~fssSFp~if~~~~~~~CLiPcAi 240 (397)
T KOG2145|consen 166 SNLDYMGGPAFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQ-----AAPSFSSSFPFIFGGRDDIPCLIPCAI 240 (397)
T ss_pred echhhccCcHHHHHHHHHhheechhhheeeeccCCccccccccCchhh-----hcccccccchhhcCCCcCCceeceeec
Confidence 9999997 4999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcC
Q 015582 245 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLG 324 (404)
Q Consensus 245 DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g 324 (404)
|||||+|||||+|+|+|++||+.+++.|+|.|+|+.+|||.|+|||+|||+|++++|++||++|||+||+.|+|+||++|
T Consensus 241 DQDPyFRmtRDvA~rlg~~Kpali~stffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~G 320 (397)
T KOG2145|consen 241 DQDPYFRMTRDVAPRLGYPKPALIHSTFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELG 320 (397)
T ss_pred cCChHHHhhhhhhhhhCCCCcceeehhhchhhhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCCC
Q 015582 325 ANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 401 (404)
Q Consensus 325 ~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
|||+|||+|+||+||++||+++|+++.+|.+|+|.+||+|+.|++.+++++..+|++|++++|+.|++||..|+|+|
T Consensus 321 Gn~dVDV~~~YLsFFldDD~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk~Vtde~ld~Fm~~r~l~~ 397 (397)
T KOG2145|consen 321 GNPDVDVSFQYLSFFLDDDDKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFVSRHQAARKEVTDETLDAFMDPRKLSF 397 (397)
T ss_pred CCCcceehHHHHHHHhccHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=9.8e-106 Score=807.19 Aligned_cols=381 Identities=87% Similarity=1.390 Sum_probs=366.3
Q ss_pred cccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceEEEEec
Q 015582 15 QVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (404)
Q Consensus 15 ~~~~pw~~~~--~~~~dy~~l~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~ 92 (404)
+.||||+|++ .+.|||+|||++|||++||+++++|++++||+++|+|+|||+||+|||++.+++++++|+++++|||+
T Consensus 1 ~~v~pw~v~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~h~~lrRgi~~~hrd~~~~l~~~e~~~~~~vYtG~ 80 (383)
T PLN02486 1 QVVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRDLEEILDAYEKGEKFYLYTGR 80 (383)
T ss_pred CccCCccccCCCCCCcCHHHHHHHhCCCcCCHHHHHHHHHhcCCCCCcccccceeeeccCHHHHHHHHhcCCCeEEEeCC
Confidence 4699999994 24799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCc
Q 015582 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~ 172 (404)
+|||++|||||++|+++++|||+++|++++|+|||+++++++.+++|++++++++|+++|+||||||++++||+|++|.+
T Consensus 81 ~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~ 160 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVG 160 (383)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHh
Confidence 99998899999999999999999999999999999999998889999999999999999999999999999999999986
Q ss_pred cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHH
Q 015582 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRM 252 (404)
Q Consensus 173 ~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l 252 (404)
..+|.+++++++++|++++++++||+++.|+|+++||+|| |||+|+.+||.++....+++|+||||+||+||++|
T Consensus 161 ~~~~~~~~~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQ-----aadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~l 235 (383)
T PLN02486 161 GAFYKNMVKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQ-----AAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRM 235 (383)
T ss_pred HhHHHHHHHHHhhCcHHHHHHhhCcCCCCCchhhhhHHHH-----HhhhhhhccHHHhCCCcCCcceeecccchHHHHHH
Confidence 6799999999999999999999999889999999999999 99999999988776656688999999999999999
Q ss_pred HHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhH
Q 015582 253 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIP 332 (404)
Q Consensus 253 ~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~ 332 (404)
|||+|+|+|+.+|+.++++++|+|+|+++|||||.|||+|||+|+|++|++||++|||||++.|+++|++.||||++|++
T Consensus 236 tRdia~r~~~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~ 315 (383)
T PLN02486 236 TRDVAPRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIP 315 (383)
T ss_pred HHHHHHHhCCCCcceeccccccCCCCCCCcCcCcCCCCeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchH
Confidence 99999999999999999999999999878999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCC
Q 015582 333 VKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP 400 (404)
Q Consensus 333 ~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~~~~~~~~~~~~~ 400 (404)
|+||++|+++++++++|+++|++|+++|++||+.||+.|+++|+++|++|++++++.|++||.+|+|+
T Consensus 316 ~~~l~~f~~dd~~~eei~~~y~~G~l~~ge~K~~lae~i~~~l~~~qerr~~~~~~~~~~~~~~~~~~ 383 (383)
T PLN02486 316 WKYLNFFLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP 383 (383)
T ss_pred HHHHHHHcCCchHHHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 99999998778999999999999999999999999999999999999999999999999999999974
No 3
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.3e-93 Score=712.02 Aligned_cols=361 Identities=39% Similarity=0.679 Sum_probs=338.8
Q ss_pred cCcccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceEEEEec
Q 015582 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (404)
Q Consensus 13 ~~~~~~pw~~~~~~~~dy~~l~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~ 92 (404)
.++.||||+|++ .+||+||+++||++|||+++++ +++ +|+|+|||+||+|||++.+++++++|+++++|||+
T Consensus 2 ~~~~v~pw~~~~--~~dy~kl~~~fg~~~~~~~~~~-~~~-----~h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG~ 73 (368)
T PRK12285 2 DEFMVTPWEVSG--IVDYDKLFEEFGIEPFTEVLPE-LPE-----PHPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTGF 73 (368)
T ss_pred CCceeCCCcCcC--cccHHHHHHHhCCCcCChHHHh-ccc-----cchHHhcCeeeecCCHHHHHHHHhcCCCeEEEEcc
Confidence 578999999998 8999999999999999999998 988 59999999999999999999999999999999999
Q ss_pred CCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCc
Q 015582 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~ 172 (404)
+||| +|||||++++++++|||+ +|++++|+|||+||++.+..+++++++++++++++|+||||||++++||.||+|.
T Consensus 74 ~PSG-~lHLGh~~~~~~~~~lQ~-~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~- 150 (368)
T PRK12285 74 MPSG-PMHIGHKMVFDELKWHQE-FGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENI- 150 (368)
T ss_pred CCCC-CccHHHHHHHHHHHHHHh-cCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchH-
Confidence 9998 899999999999999999 6899999999999998878999999999999999999999999999999999996
Q ss_pred cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHH
Q 015582 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRM 252 (404)
Q Consensus 173 ~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l 252 (404)
.+|..++.+++++|++++++.+||+++.|+|+++||+|| |||+|.+ ++.. ...+|+||||.||+||+++
T Consensus 151 -~~~~l~~~l~~~~t~~~l~r~~~f~~~~~~g~~~YP~lQ-----aADil~~---~~~~--~~~~~lvPvG~DQ~~h~~l 219 (368)
T PRK12285 151 -KVYDLAFELAKKVNFSELKAIYGFTGETNIGHIFYPATQ-----AADILHP---QLEE--GPKPTLVPVGIDQDPHIRL 219 (368)
T ss_pred -HHHHHHHHHHhhCcHHHHHHhhCCCCCCchhhhhhhHHH-----HHHHHhh---cccc--cCCceEEEeccchHHHHHH
Confidence 478888899999999999999999999999999999999 9955532 2221 1246999999999999999
Q ss_pred HHHHHhHh----CCCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCc
Q 015582 253 TRDVAPRI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLE 328 (404)
Q Consensus 253 ~rdla~r~----~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd 328 (404)
|||+|+|+ |+++|+.++++++|||+| +|||||+|+|+|||+|+|++|++||++ ||||++.|+++||+.||||+
T Consensus 220 tRdiA~r~n~~~gf~~P~~l~~~~lpgL~G--~KMSkS~~~s~I~L~D~p~~I~kKI~k-A~Td~~~t~~~~~~~~g~p~ 296 (368)
T PRK12285 220 TRDIAERLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKIMK-ALTGGRATLEEQRKLGGEPD 296 (368)
T ss_pred HHHHHHHHhhhcCCCCchhHhhhcccCCCC--CcCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCCcccccccccCCCCC
Confidence 99999999 899999999999999998 799999999999999999999999999 99999999999999999999
Q ss_pred chhHHHHHHhhc-CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCC
Q 015582 329 VDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399 (404)
Q Consensus 329 ~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~~~~~~~~~~~~ 399 (404)
+|++|+|+++|+ ++++++++|+++|++|+++|++||+.||+.|+++|+++|++|+++++ .|++|+...++
T Consensus 297 ~~~v~~~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~~~-~~~~~~~~~~~ 367 (368)
T PRK12285 297 ECVVYELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEARE-ILEKYLYDGKL 367 (368)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccC
Confidence 999999999997 57889999999999999999999999999999999999999999999 99999877654
No 4
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-68 Score=516.86 Aligned_cols=291 Identities=29% Similarity=0.419 Sum_probs=260.7
Q ss_pred CCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCH-HHHHHHHHHHHHHHHHcCCCCCc
Q 015582 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV-EESQRLARENAKDIIACGFDVTK 161 (404)
Q Consensus 83 ~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~-e~i~~~~~~~~~~ilA~G~dp~k 161 (404)
+.+++++||++||| .||||||++++...|.|+..+..+++.|||+||++.+..++ +.+++++++++++|+|||+||+|
T Consensus 3 ~~~~~vlSG~~PSG-~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k 81 (314)
T COG0180 3 MKKFRVLSGIQPSG-KLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEK 81 (314)
T ss_pred CCCceEEecCCCCC-CcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccc
Confidence 46889999999998 69999999998877766554467788889999999876444 88999999999999999999999
Q ss_pred eEEEeCCccCccchHHHHHHHHhhcCHHHHHHhhCCCCCcc-------ccccccccccchhhhhcCCCCCCCCccccCCC
Q 015582 162 TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDH-------IGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKD 234 (404)
Q Consensus 162 t~i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~-------~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~ 234 (404)
++||.||++++ .+...+.++..++++++.+.++|++..+ +|.++||+|| || |||.+++
T Consensus 82 ~~if~QS~v~e--~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~~~~~~Gl~~YPvlq-----AA--------DILl~~a 146 (314)
T COG0180 82 STIFLQSEVPE--HAELAWLLSCVTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQ-----AA--------DILLYQA 146 (314)
T ss_pred cEEEEccCchH--HHHHHHHHHccCcHHHHHhhcCcchhhhcccccccccchhccHHH-----HH--------HhhhccC
Confidence 99999999975 5556677888899999999888876544 9999999999 99 9999987
Q ss_pred CcccccccccCchhHHHHHHHHHhHhC------CCCcceeecc--cccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhc
Q 015582 235 HLRCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIESS--FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 306 (404)
Q Consensus 235 ~~~~~vp~G~DQd~~~~l~rdla~r~~------~~kp~~l~~~--~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~ 306 (404)
|+||||.||+||+|||||||+|+| +++|..+++. ++|||+|+ +|||||+|||+|+|+|+|++|++||+
T Consensus 147 ---~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~ 222 (314)
T COG0180 147 ---TLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKIK 222 (314)
T ss_pred ---CeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCC-CcccccCCCCeeeccCCHHHHHHHHH
Confidence 799999999999999999999999 7899999988 99999998 99999999999999999999999999
Q ss_pred cccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 015582 307 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 386 (404)
Q Consensus 307 kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~ 386 (404)
+ |.|++ .+.+++++ ||+|++|++|+|+.+|+. +++.+++++.|++|.++||+||+.||+.|+++|.++|+||++++
T Consensus 223 ~-~~td~-~~~~~~~~-~g~Pe~~~l~~~~~~~~~-~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~ 298 (314)
T COG0180 223 K-AATDG-PTLIEYRK-GGKPEVCNLFEIYSAFFE-DDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELR 298 (314)
T ss_pred H-hccCC-CCccccCC-CCCCCcchHHHHHHHhcC-CCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 77777 77888888 999999999999999975 56667999999999999999999999999999999999999998
Q ss_pred HH--HHHHHHhcC
Q 015582 387 DE--MVDAFMAVR 397 (404)
Q Consensus 387 ~~--~~~~~~~~~ 397 (404)
++ ++.+++..+
T Consensus 299 ~~~~~l~~il~~g 311 (314)
T COG0180 299 EDPAYLDDILRKG 311 (314)
T ss_pred hCHHHHHHHHhcc
Confidence 75 577766543
No 5
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=1.9e-63 Score=494.28 Aligned_cols=293 Identities=38% Similarity=0.574 Sum_probs=264.3
Q ss_pred CceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCC-CHHHHHHHHHHHHHHHHHcCCCCCce
Q 015582 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL-SVEESQRLARENAKDIIACGFDVTKT 162 (404)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~-~~e~i~~~~~~~~~~ilA~G~dp~kt 162 (404)
+|+++|||++||| .|||||++++++.+++|+ .|+.++|+|||+||++.+.. +.+.++.++++++++|+|||+||+++
T Consensus 1 ~~~~v~~G~~PTG-~~HlG~~l~~~~~~~~~q-~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~ 78 (328)
T TIGR00233 1 KKFRVLTGIQPSG-KMHLGHYLGAIQTKWLQQ-FGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKT 78 (328)
T ss_pred CCCEEEEeeCCCc-HhHHHHHHHHHHHHHHHh-CCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhhe
Confidence 4789999999998 999999999988888886 58999999999999996654 67888988889999999999999999
Q ss_pred EEEeCCccCccchHHHHHHHHhhcCHHHHHHhhCCCCC-----ccccccccccccchhhhhcCCCCCCCCccccCCCCcc
Q 015582 163 FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGE-----DHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLR 237 (404)
Q Consensus 163 ~i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~~~~-----~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~ 237 (404)
+||.||+|+ .++..++.+++++|++++.+..+|++. .++|+++||+|| || ||+.++++
T Consensus 79 ~if~qS~~~--e~~el~~~l~~~~t~~~l~r~~~~k~k~~~~~~~~g~l~YP~lq-----aa--------Dil~~~~d-- 141 (328)
T TIGR00233 79 FIFLQSDYP--EHYELAWLLSCQVTFGELKRMTQFKDKSQAENVPIGLFSYPVLQ-----AA--------DILLYQAD-- 141 (328)
T ss_pred EEEEcCCcH--HHHHHHHHHHccCCHHHHHhccCcchhccCCCCCchhhcchHHH-----Hh--------hhhhcCCC--
Confidence 999999997 578888889999999999988777544 499999999999 99 99999885
Q ss_pred cccccccCchhHHHHHHHHHhHhC------CCCcceeecccccCCCCCC-CCCCCCCCCCeeeecCCHHHHHHHhccccc
Q 015582 238 CLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIESSFFPALQGET-GKMSASDPNSAIYVTDSAKAIKNKINKYAF 310 (404)
Q Consensus 238 ~~vp~G~DQd~~~~l~rdla~r~~------~~kp~~l~~~~lp~L~G~~-~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~ 310 (404)
+||+|.||+||++||||+|+|+| +++|..++++++|.|.|.. +|||||+|||+|||+|+|++|++||++ |+
T Consensus 142 -~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D~~e~I~~KI~~-a~ 219 (328)
T TIGR00233 142 -LVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTDTPKQIKKKIRK-AA 219 (328)
T ss_pred -eeecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecCCHHHHHHHHHh-cC
Confidence 89999999999999999999999 7899988877755555542 699999999999999999999999999 88
Q ss_pred cCCc-chhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHHH
Q 015582 311 SGGQ-ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEM 389 (404)
Q Consensus 311 t~~~-~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~~ 389 (404)
|++. .+.+++++.+|+|+++++|+++.+|+.+++++++++++|.+|+++|++||+.||+.|+++|.|+|++|+++++++
T Consensus 220 td~~~~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~~ 299 (328)
T TIGR00233 220 TDGGRVTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEEI 299 (328)
T ss_pred CCCCCCcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765 566778889999999999999999987778999999999999999999999999999999999999999999989
Q ss_pred HHHHHhcC
Q 015582 390 VDAFMAVR 397 (404)
Q Consensus 390 ~~~~~~~~ 397 (404)
|++++..+
T Consensus 300 ~~~~l~~g 307 (328)
T TIGR00233 300 LDKILEPG 307 (328)
T ss_pred HHHHHHHH
Confidence 99998763
No 6
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.2e-63 Score=493.45 Aligned_cols=297 Identities=25% Similarity=0.360 Sum_probs=266.2
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCH
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV 138 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~ 138 (404)
-.+++||.....++ ++|.+.+++++++++|+||+||| .|||||+++++..+|||++ |+.++|+|||+||++.++.++
T Consensus 5 ~~~~~~~~~e~~~~-~el~~~l~~~~~~~v~~G~~PTG-~lHLG~~~~~~~~~~lq~~-g~~~~i~IaD~ha~~~~~~~~ 81 (329)
T PRK08560 5 LELITRNTEEVVTE-EELRELLESKEEPKAYIGFEPSG-KIHLGHLLTMNKLADLQKA-GFKVTVLLADWHAYLNDKGDL 81 (329)
T ss_pred HHHHHhCceeecCH-HHHHHHHhCCCCCEEEEccCCCC-cchhhhhHHHHHHHHHHHC-CCeEEEEEccchhhcCCCCCH
Confidence 35678887665554 77777888789999999999998 7999999999999999995 889999999999999777899
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCcc-chHHHHHHHHhhcCHHHHHHh---hCCC-CCccccccccccccc
Q 015582 139 EESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGI---FGFT-GEDHIGKVSFPPVQE 213 (404)
Q Consensus 139 e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~-~~~~~~~~l~~~~t~~~~~~~---~g~~-~~~~~g~~~YpllQ~ 213 (404)
+++++++++++++|+|||+||+++.||.||+|+.+ .||..++++++++|++++.+. +++. ++.|+|+|+||+||
T Consensus 82 ~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~~~~~~~~g~l~YP~lq- 160 (329)
T PRK08560 82 EEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGRRMEEPDVSKLVYPLMQ- 160 (329)
T ss_pred HHHHHHHHHHHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcccCCCCCHHHHHHHHHH-
Confidence 99999999999999999999999999999999865 588899999999999999873 4543 34599999999999
Q ss_pred hhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeee
Q 015582 214 MIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 293 (404)
Q Consensus 214 ~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~ 293 (404)
|| |++.++++ +||+|.||+||+++|||+|+|+|+.+|..+++++||+|+|+++|||||+|+++||
T Consensus 161 ----aa--------Dil~~~ad---~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~ 225 (329)
T PRK08560 161 ----VA--------DIFYLDVD---IAVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIF 225 (329)
T ss_pred ----HH--------HHHHhCCC---EEEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeec
Confidence 99 99999885 8999999999999999999999999999999999999999767999999888999
Q ss_pred ecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCCh------------------HHHHHHHHHHhc
Q 015582 294 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDD------------------AELEHIKKEYGA 355 (404)
Q Consensus 294 L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~------------------~eleei~~~~~~ 355 (404)
|+|+|++|++||++ |||++. +|+.|++++|+++|..++ +++++++++|++
T Consensus 226 L~D~~~~I~~KI~k-A~t~~~-----------~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~ 293 (329)
T PRK08560 226 VHDSPEEIRRKIKK-AYCPPG-----------EVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAE 293 (329)
T ss_pred ccCCHHHHHHHHHh-ccCCCC-----------CcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHc
Confidence 99999999999999 999863 466677899999876332 679999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 015582 356 GGMLTGEVKQRLAKVLTELVERHQVARAAVT 386 (404)
Q Consensus 356 G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~ 386 (404)
|.++|++||+.||+.|+++|.|+|+++++-.
T Consensus 294 g~l~~~~lK~~la~~i~~~l~pir~~~~~~~ 324 (329)
T PRK08560 294 GKLHPMDLKNAVAEYLIEILEPVREYLEEGP 324 (329)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 9999999999999999999999999998643
No 7
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-62 Score=487.00 Aligned_cols=286 Identities=26% Similarity=0.353 Sum_probs=251.1
Q ss_pred eEEEEecCCCCCCcchhchHHHhhHHH--HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015582 86 FYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (404)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~v~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (404)
.++|+|++||| .|||||++|++ .+| ||++ +.++++|||+||++.+ .+++++++++++++++|+|||+||+|++
T Consensus 2 ~~v~~G~~PTG-~lHLG~~~g~~-~~~~~lQ~~--~~~~~~IaD~ha~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~ 76 (333)
T PRK00927 2 KRVLSGIQPTG-KLHLGNYLGAI-KNWVELQDE--YECFFCIADLHALTVP-QDPEELRENTRELAADYLACGIDPEKST 76 (333)
T ss_pred CEEEEeeCCCc-cchHHhHHHHH-HHHHHHHhc--CCeEEEEecHHHHhCC-CCHHHHHHHHHHHHHHHHeEccChhheE
Confidence 36999999998 69999999885 566 9986 5567778999999865 5899999999999999999999999999
Q ss_pred EEeCCccCccc--hHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCc
Q 015582 164 IFSDFDYVGGA--FYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHL 236 (404)
Q Consensus 164 i~~~s~~~~~~--~~~-----~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~ 236 (404)
||.||+|.++. +|. .+.++.|+.++++...+ +.+++|+|+++||+|| || ||+.+++
T Consensus 77 if~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~--~~~~~~~g~~~YP~lQ-----aa--------Dil~~~~-- 139 (333)
T PRK00927 77 IFVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAK--QKENVSAGLFTYPVLM-----AA--------DILLYKA-- 139 (333)
T ss_pred EEEeCCCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhc--cCCCCCcHhhhcHHHH-----HH--------HHHhcCC--
Confidence 99999998652 222 34566677777665433 2468899999999999 99 9998877
Q ss_pred ccccccccCchhHHHHHHHHHhHhCC------CCcceee---cccccCCCCCCCCCCCCCCC--CeeeecCCHHHHHHHh
Q 015582 237 RCLIPCAIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKI 305 (404)
Q Consensus 237 ~~~vp~G~DQd~~~~l~rdla~r~~~------~kp~~l~---~~~lp~L~G~~~KMSkS~~n--saI~L~D~~~~i~~KI 305 (404)
|+||+|.||+||+++|||+|+|+|+ ++|..++ +++||||+|+++|||||+++ |+|||+|+|++|++||
T Consensus 140 -divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI 218 (333)
T PRK00927 140 -DLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKI 218 (333)
T ss_pred -CEEeeccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHH
Confidence 6999999999999999999999984 5787665 37899999977799999996 7999999999999999
Q ss_pred ccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 015582 306 NKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 385 (404)
Q Consensus 306 ~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~ 385 (404)
++ |+|++..+.+++++.|++|++|++++|+++|+ ++++++++++|.+|.++|++||+.||+.|+++|.|+|++|+++
T Consensus 219 ~~-a~td~~~~~~~~~~~~~~p~~~~l~~~~~~~~--~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~ 295 (333)
T PRK00927 219 KK-AVTDSERLREIRYDLPNKPEVSNLLTIYSALS--GESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEEL 295 (333)
T ss_pred Hh-CCCCCCcccccccCCCCCCccccHHHHHHHhC--CCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 99999888888899999999999999999995 6789999999999999999999999999999999999999999
Q ss_pred hHH--HHHHHHhcC
Q 015582 386 TDE--MVDAFMAVR 397 (404)
Q Consensus 386 ~~~--~~~~~~~~~ 397 (404)
+++ +|++++..+
T Consensus 296 ~~~~~~~~~il~~G 309 (333)
T PRK00927 296 LADPAYLDEILAEG 309 (333)
T ss_pred HcCHHHHHHHHHHH
Confidence 864 899988753
No 8
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=1.2e-61 Score=481.70 Aligned_cols=287 Identities=28% Similarity=0.388 Sum_probs=249.3
Q ss_pred eEEEEecCCCCCCcchhchHHHhhHH-HHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015582 86 FYLYTGRGPSSEALHLGHLVPFMFTK-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (404)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~v~~~~~~-~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (404)
.++|||++||| .|||||++++++.. +||++++ ++|+|||+|+++++..+++++++++++++++|+|||+||+|++|
T Consensus 3 ~~v~sG~~PTG-~~HLGn~l~~~~~~~~lQ~~~~--~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i 79 (333)
T PRK12282 3 PIILTGDRPTG-KLHLGHYVGSLKNRVALQNEHE--QFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTI 79 (333)
T ss_pred CEEEEeeCCCC-cchHHHHHHHHHHHHHHHhCCC--EEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEE
Confidence 47999999998 79999999976544 7999865 57778999999876789999999999999999999999999999
Q ss_pred EeCCccCcc----chHHH---HHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcc
Q 015582 165 FSDFDYVGG----AFYKN---MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLR 237 (404)
Q Consensus 165 ~~~s~~~~~----~~~~~---~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~ 237 (404)
|.||+|.++ ++|.+ +.++.|+.++++..+++|+.+++++|+++||+|| || ||+.+++
T Consensus 80 ~~qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lq-----aa--------DIl~~~~--- 143 (333)
T PRK12282 80 FIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQ-----AA--------DITAFKA--- 143 (333)
T ss_pred EECCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHH-----HH--------HHHhhCC---
Confidence 999999753 33443 3466667777766666677788899999999999 99 9998887
Q ss_pred cccccccCchhHHHHHHHHHhHhCC--CCccee-------ecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccc
Q 015582 238 CLIPCAIDQDPYFRMTRDVAPRIGY--HKPALI-------ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKY 308 (404)
Q Consensus 238 ~~vp~G~DQd~~~~l~rdla~r~~~--~kp~~l-------~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~ky 308 (404)
|+||||.||+||++||||+|+|+|. .+|..+ .+++||||+| ++|||||++| +|||+|+|++|++||++
T Consensus 144 d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g-~~KMSKS~~~-~I~L~D~pe~I~kKI~~- 220 (333)
T PRK12282 144 TLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDG-KAKMSKSLGN-AIYLSDDADTIKKKVMS- 220 (333)
T ss_pred CEEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCC-CCcCCCCCCC-eeeeeCCHHHHHHHHHh-
Confidence 6999999999999999999999993 333322 3679999998 4899999976 99999999999999999
Q ss_pred cccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHH
Q 015582 309 AFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE 388 (404)
Q Consensus 309 A~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~ 388 (404)
|||++.. .+++.+++|++|++++|+++|..+++++++++++|.+|+++|++||+.||+.|+++|.|+|++|++++.+
T Consensus 221 A~td~~~---~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~ 297 (333)
T PRK12282 221 MYTDPNH---IRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKD 297 (333)
T ss_pred CcCCCCC---ccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9998732 3567899999999999999997668899999999999999999999999999999999999999998764
Q ss_pred --HHHHHHhcC
Q 015582 389 --MVDAFMAVR 397 (404)
Q Consensus 389 --~~~~~~~~~ 397 (404)
+|++++..+
T Consensus 298 ~~~~~~vl~~G 308 (333)
T PRK12282 298 PGYVLEILKAG 308 (333)
T ss_pred HHHHHHHHHHH
Confidence 798888653
No 9
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=1e-60 Score=465.71 Aligned_cols=264 Identities=41% Similarity=0.632 Sum_probs=243.0
Q ss_pred EEEEecCCCCCCcchhchHH-HhhHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 015582 87 YLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (404)
Q Consensus 87 ~iytG~~PTg~~lHlGh~v~-~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~ 165 (404)
++|||++||| +|||||+++ +....+||++ |+.++|+|||+||++.+..+++++++++++++++++|||+||++++||
T Consensus 1 ~i~tG~~PTG-~lHLG~~~~al~~~~~lQ~a-g~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~ 78 (280)
T cd00806 1 RVLSGIQPSG-SLHLGHYLGAFRFWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIF 78 (280)
T ss_pred CEEEeeCCCc-hhhHHHHHHHHHHHHHHHhC-CCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEE
Confidence 4899999998 999999999 7788889996 889999999999999766799999999999999999999999999999
Q ss_pred eCCccCccchHHHHHHHHhhcCHHHHHHhhCCCC------CccccccccccccchhhhhcCCCCCCCCccccCCCCcccc
Q 015582 166 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG------EDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCL 239 (404)
Q Consensus 166 ~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~~~------~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~ 239 (404)
.||+|. .++...+.+++.+|++++.+..+|++ +.|+|+|+||+|| || ||+.+++ |+
T Consensus 79 ~qS~~~--~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~~~~~~~g~~~YP~lq-----aa--------Dil~~~~---~~ 140 (280)
T cd00806 79 FQSDVP--EHYELAWLLSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQ-----AA--------DILLYKA---CL 140 (280)
T ss_pred EcCCcH--HHHHHHHHHhCcCCHHHHHhccchhhhhccCCCCcchhhcchHHH-----Hh--------hhhhccC---CE
Confidence 999997 46777788999999999998888765 8899999999999 99 9998887 79
Q ss_pred cccccCchhHHHHHHHHHhHhC------CCCcceeec--ccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhcccccc
Q 015582 240 IPCAIDQDPYFRMTRDVAPRIG------YHKPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFS 311 (404)
Q Consensus 240 vp~G~DQd~~~~l~rdla~r~~------~~kp~~l~~--~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t 311 (404)
||+|.||+||++++||+|+|+| +++|..+++ ++||+|+|+++|||||+++|+|||+|+|++|++||++ |+|
T Consensus 141 vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI~~-a~t 219 (280)
T cd00806 141 VPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMK-AAT 219 (280)
T ss_pred EeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHHHh-ccC
Confidence 9999999999999999999999 789999988 9999999976899999997799999999999999999 999
Q ss_pred CCcchhHHHhhcCCCCcchhHHHHHHhhc-CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 015582 312 GGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 374 (404)
Q Consensus 312 ~~~~t~e~~~~~g~~pd~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~ 374 (404)
++..+ ++++.+++|++|++++|+.+|+ .+.++++++ ++|++|.+++++||+.||+.|+++
T Consensus 220 d~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 220 DGGRT--EHRRDGGGPGVSNLVEIYSAFFNDDDEELEEI-DEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred CCCCc--eecCCCCCCCcChHHHHHHHHhCCCHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHhC
Confidence 98764 6788999999999999999875 567788888 899999999999999999999864
No 10
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.8e-59 Score=464.38 Aligned_cols=283 Identities=18% Similarity=0.249 Sum_probs=244.8
Q ss_pred eEEEEecCCCCCCcchhchHHHhh-HHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015582 86 FYLYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (404)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~v~~~~-~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (404)
.++|+|++||| .||||||++++. ..++|+.+++.+++.|||+||++. ..+++++++++++++++|+|||+||+|++|
T Consensus 4 ~~v~sGiqPTG-~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~-~~~~~~l~~~~~~~~~~~lA~GlDP~k~~i 81 (332)
T PRK12556 4 KIMLTGIKPTG-YPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNA-VHDPEQFRSYTREVAATWLSLGLDPEDVIF 81 (332)
T ss_pred CEEEEEECCCC-cchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccC-CCCHHHHHHHHHHHHHHHhheeecccceEE
Confidence 47999999998 899999999864 345888788888888999999863 479999999999999999999999999999
Q ss_pred EeCCccCccc---hHH----HHHHHHhhcCHHHHHHh-----hCCCCCccccccccccccchhhhhcCCCCCCCCccccC
Q 015582 165 FSDFDYVGGA---FYK----NMVKVAKCVTYNKVVGI-----FGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSG 232 (404)
Q Consensus 165 ~~~s~~~~~~---~~~----~~~~l~~~~t~~~~~~~-----~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~ 232 (404)
|.||+++++. |+. .+.++.|+.++++.... .|+++++|+|+++||+|| || ||+.+
T Consensus 82 f~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLq-----AA--------DIl~~ 148 (332)
T PRK12556 82 YRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILM-----AA--------DILLF 148 (332)
T ss_pred EECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHH-----hh--------hhhhc
Confidence 9999998642 211 24567888887766442 245567899999999999 99 99999
Q ss_pred CCCcccccccccCchhHHHHHHHHHhHhC------CCCccee---ecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHH
Q 015582 233 KDHLRCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 303 (404)
Q Consensus 233 ~~~~~~~vp~G~DQd~~~~l~rdla~r~~------~~kp~~l---~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~ 303 (404)
++ |+||||.||+||+++|||+|+|+| +++|..+ +++++|||+| +|||||++| +|+|+|+|++|++
T Consensus 149 ~~---d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg--~KMSKS~~n-~I~L~D~p~~I~k 222 (332)
T PRK12556 149 QA---THVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDG--RKMSKSYGN-VIPLFAEQEKLRK 222 (332)
T ss_pred cC---CEEEeccccHHHHHHHHHHHHHHHHhccccCCCceeccccccccccCCCC--CCCCCCCCC-cccccCCHHHHHH
Confidence 87 589999999999999999999999 5778766 6899999998 699999976 8999999999999
Q ss_pred HhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHH
Q 015582 304 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 383 (404)
Q Consensus 304 KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~ 383 (404)
||++ |+|++... +.+++|++|++++|+++|.. ++++++++++|++ .++|++||+.||+.|+++|.|+|++++
T Consensus 223 KI~k-a~Td~~~~-----~~~~~p~~~~l~~i~~~~~~-~~~~eei~~~y~~-~~~~~~~K~~lae~i~~~l~pire~~~ 294 (332)
T PRK12556 223 LIFK-IKTDSSLP-----NEPKDPETSALFTIYKEFAT-EEEVQSMREKYET-GIGWGDVKKELFRVVDRELAGPREKYA 294 (332)
T ss_pred HHHH-hccCCCcc-----cCCCCcchhHHHHHHHHHCC-chhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99998542 34789999999999999963 4789999999987 489999999999999999999999999
Q ss_pred HhhHH--HHHHHHhcC
Q 015582 384 AVTDE--MVDAFMAVR 397 (404)
Q Consensus 384 ~~~~~--~~~~~~~~~ 397 (404)
++..+ +|++++..+
T Consensus 295 ~~~~~~~~~~~il~~G 310 (332)
T PRK12556 295 MYMNEPSLLDEALEKG 310 (332)
T ss_pred HHHcCHHHHHHHHHHH
Confidence 99863 799888653
No 11
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7e-58 Score=458.55 Aligned_cols=285 Identities=20% Similarity=0.236 Sum_probs=243.9
Q ss_pred EEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 015582 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 166 (404)
Q Consensus 87 ~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~ 166 (404)
++|+|++||| .||||||++++ .+|.+-..+..+++.|||+||++.+..+++++++++.+++++|+|||+||+|+.||.
T Consensus 4 ~v~sGiqPSG-~~HLGnylG~i-k~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~ 81 (398)
T PRK12283 4 RVLSGMRPTG-RLHLGHYHGVL-KNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFI 81 (398)
T ss_pred EEEEEeCCCC-cchHHHHHHHH-HHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 6999999998 89999999985 788543335677888999999987667999999999999999999999999999999
Q ss_pred CCccCcc--chHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccc
Q 015582 167 DFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCL 239 (404)
Q Consensus 167 ~s~~~~~--~~~~-----~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~ 239 (404)
||+++++ .+|. .+.++.|++++++...+.+..++.++|.++||+|| || |||.+++ ++
T Consensus 82 QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLq-----AA--------DILl~~a---~i 145 (398)
T PRK12283 82 QSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQ-----SA--------DILIYRA---GL 145 (398)
T ss_pred CCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHH-----HH--------HHHhcCC---CE
Confidence 9999864 2222 24567777888776554333457799999999999 99 9999987 58
Q ss_pred cccccCchhHHHHHHHHHhHhCC---------------------------------------------------------
Q 015582 240 IPCAIDQDPYFRMTRDVAPRIGY--------------------------------------------------------- 262 (404)
Q Consensus 240 vp~G~DQd~~~~l~rdla~r~~~--------------------------------------------------------- 262 (404)
||||.||+||++||||+|+|||.
T Consensus 146 VPVG~DQ~qHleLaRdIA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (398)
T PRK12283 146 VPVGEDQVPHVEMTREIARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLS 225 (398)
T ss_pred eeeccccHHHHHHHHHHHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhh
Confidence 99999999999999999999664
Q ss_pred -------------------CCcce--eecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHh
Q 015582 263 -------------------HKPAL--IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHR 321 (404)
Q Consensus 263 -------------------~kp~~--l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~ 321 (404)
+.|.. .++++||||+| +|||||.+| +|+|+|+|++|++||++ |+|++. ++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~I~gLdg--~KMSKS~~n-~I~L~Ds~~~I~kKI~~-a~TDs~---~~~~ 298 (398)
T PRK12283 226 MGDRERLFGYLEGAGKIILPEPQALLTEASKMPGLDG--QKMSKSYGN-TIGLREDPESVTKKIRT-MPTDPA---RVRR 298 (398)
T ss_pred hhhhccccccccccCCcccCCCcccccCCCcccCCCC--CcCCCCCCC-eeeCcCCHHHHHHHHHh-CCCCCc---cccc
Confidence 23333 24689999987 799999765 99999999999999999 999853 5678
Q ss_pred hcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHH--HHHHHHhcC
Q 015582 322 KLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 397 (404)
Q Consensus 322 ~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~--~~~~~~~~~ 397 (404)
..||+|++|++++|+.+|+ ++++++++.++|++|++.|++||+.||+.|.++|.++|++++++.++ +|++++..+
T Consensus 299 ~~~g~Pe~~nl~~i~~~~~-~~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G 375 (398)
T PRK12283 299 TDPGDPEKCPVWQLHQVYS-DEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADG 375 (398)
T ss_pred CCCCCCCcCHHHHHHHHhC-CChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 8899999999999999994 45579999999999999999999999999999999999999999764 788887653
No 12
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.2e-57 Score=456.51 Aligned_cols=296 Identities=19% Similarity=0.269 Sum_probs=250.9
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhch-HHHhhHHHHHhhCCCeEEEEccCcccccccC--
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHL-VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~-v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 135 (404)
-.++.||..... ..++|.+.+++++++++|+|++||| .|||||. +..+...+||++ |+.++++|||+||++.++
T Consensus 41 ~~~i~r~~~e~i-~~eel~~~l~~~~~~~v~~G~~PTG-~lHLG~g~i~~~~~~~lq~~-G~~v~~~IaD~hA~~~~~~g 117 (383)
T PTZ00126 41 VKLCLSIGEECI-QPEELRELLKLKERPICYDGFEPSG-RMHIAQGILKAINVNKLTKA-GCVFVFWVADWFALLNNKMG 117 (383)
T ss_pred HHHHhcCceeec-CHHHHHHHHhcCCCCEEEEEECCCC-cccccchHhHhHHHHHHHhC-CCeEEEEEccceeecCCCCC
Confidence 356778866544 4567777788889999999999999 7999994 444455679985 788999999999998754
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCc---cchHHHHHHHHhhcCHHHHHH---hhCCC--CCccccccc
Q 015582 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG---GAFYKNMVKVAKCVTYNKVVG---IFGFT--GEDHIGKVS 207 (404)
Q Consensus 136 ~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~---~~~~~~~~~l~~~~t~~~~~~---~~g~~--~~~~~g~~~ 207 (404)
.+++++++++.++++.++|||+||+++.||.||+|.. ..+|..++++++++|+++|++ .+++. ++.++|+|+
T Consensus 118 ~~l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~~~~~~~g~l~ 197 (383)
T PTZ00126 118 GDLEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSEGDEQPCAQIL 197 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhccccCCCCCchhhh
Confidence 6899999999999999999999999999999999863 257899999999999999974 34543 356899999
Q ss_pred cccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCC-CCcceeecccccCCCCCCCCCCCC
Q 015582 208 FPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSAS 286 (404)
Q Consensus 208 YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~-~kp~~l~~~~lp~L~G~~~KMSkS 286 (404)
||+|| || |++.+++| ++|+|.||+||+++|||+|+|+|+ ++|.++++++||||++.++|||||
T Consensus 198 YP~LQ-----aa--------Dil~l~ad---ivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS 261 (383)
T PTZ00126 198 YPCMQ-----CA--------DIFYLKAD---ICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKS 261 (383)
T ss_pred hhHHH-----hh--------hhhccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcC
Confidence 99999 99 99999986 789999999999999999999995 678888999999997546899999
Q ss_pred CCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhc---------C---------ChHHHHH
Q 015582 287 DPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL---------E---------DDAELEH 348 (404)
Q Consensus 287 ~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~---------~---------~~~elee 348 (404)
++|++|||+|+|++|++||++ |||++... ++|| ++.|++++. . +.+++++
T Consensus 262 ~~ns~I~L~Dspe~I~kKI~k-A~t~p~~~-------~~np----v~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~ee 329 (383)
T PTZ00126 262 DPNSAIFMEDSEEDVNRKIKK-AYCPPGVI-------EGNP----ILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEE 329 (383)
T ss_pred CCCCeecCCCCHHHHHHHHHh-CcCCCCCC-------CCCc----chhhhhhcccccccceeEeccccccCccCcCCHHH
Confidence 999999999999999999999 99986431 3444 456665421 1 1258999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 015582 349 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 385 (404)
Q Consensus 349 i~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~ 385 (404)
++++|++|.++|++||+.||+.|+++|.|+|++++.-
T Consensus 330 l~~~y~~g~l~p~dlK~~lae~i~~~L~PIRe~~~~~ 366 (383)
T PTZ00126 330 LEKDYLSGALHPGDLKPALAKYLNLMLQPVRDHFQNN 366 (383)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999854
No 13
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.4e-57 Score=455.10 Aligned_cols=283 Identities=21% Similarity=0.308 Sum_probs=243.8
Q ss_pred eEEEEecCCCCCCcchhchHHHhhHHH--HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015582 86 FYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (404)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~v~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (404)
.++|+||+||| .||||||++.+ .+| ||+ ++.+++.|||+||++. ..+++++++++++++++|+|||+||+|+.
T Consensus 47 ~~v~sGiqPSG-~lHLGnylGai-~~~v~lQ~--~~~~~~~IADlHAlt~-~~~~~~lr~~~~~~~a~~lA~GlDP~ks~ 121 (389)
T PLN02886 47 KRVVSGVQPTG-SIHLGNYLGAI-KNWVALQE--TYDTFFCVVDLHAITL-PHDPRELGKATRSTAAIYLACGIDPSKAS 121 (389)
T ss_pred CeEEEEECCCC-ccHHHHHHHHH-HHHHHHhc--cCCEEEEEecHHHhhC-CCCHHHHHHHHHHHHHHHHHcCcCccceE
Confidence 46999999998 89999999985 556 897 4556777899999985 46999999999999999999999999999
Q ss_pred EEeCCccCcc--chHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCc
Q 015582 164 IFSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHL 236 (404)
Q Consensus 164 i~~~s~~~~~--~~~~-----~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~ 236 (404)
||.||++.++ .+|. .+.++.|+++++++.+..+ .+++++|.|+||+|| || |||.++++
T Consensus 122 if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~-~~~~~~gll~YPvLq-----AA--------DILl~~a~- 186 (389)
T PLN02886 122 VFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAG-DENVGVGLLTYPVLM-----AS--------DILLYQAD- 186 (389)
T ss_pred EEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcC-CCCCChHhhhChHHH-----Hh--------hhhhcCCC-
Confidence 9999998865 3333 2468999999999887765 356899999999999 99 99999985
Q ss_pred ccccccccCchhHHHHHHHHHhHhCC------------------CCcceee---cccccCCCCCCCCCCCCCCC--Ceee
Q 015582 237 RCLIPCAIDQDPYFRMTRDVAPRIGY------------------HKPALIE---SSFFPALQGETGKMSASDPN--SAIY 293 (404)
Q Consensus 237 ~~~vp~G~DQd~~~~l~rdla~r~~~------------------~kp~~l~---~~~lp~L~G~~~KMSkS~~n--saI~ 293 (404)
+||||.||+||++||||+|+|||+ +.|..++ +.+||+|+|+.+|||||+|| |+|+
T Consensus 187 --~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~ 264 (389)
T PLN02886 187 --LVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRIN 264 (389)
T ss_pred --eEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEE
Confidence 899999999999999999999984 3555554 45899999876899999985 7999
Q ss_pred ecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 015582 294 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE 373 (404)
Q Consensus 294 L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~ 373 (404)
|+|+|++|++||++ |+||+..++++ ..+++|++++++.++..| ++.++++++++|+ + +++++||+.|++.|++
T Consensus 265 L~Ds~e~I~kKI~~-a~TD~~~~i~~--~~p~~p~v~nl~~i~~~~--~~~~~eei~~~~~-~-~~~g~~K~~Lae~I~~ 337 (389)
T PLN02886 265 LLDPPDVIANKIKR-CKTDSFPGLEF--DNPERPECNNLLSIYQLV--TGKTKEEVLAECG-D-MRWGDFKPLLTDALIE 337 (389)
T ss_pred ecCCHHHHHHHHhc-CCCCCCCCccC--CCCCCcccccHHHHHHHc--cCCCHHHHHHHhc-C-CCCchHHHHHHHHHHH
Confidence 99999999999999 99999876543 455778888888888887 4678899999997 3 6899999999999999
Q ss_pred HhhhHHHHHHHhhHH--HHHHHHhcC
Q 015582 374 LVERHQVARAAVTDE--MVDAFMAVR 397 (404)
Q Consensus 374 ~l~~~r~~~~~~~~~--~~~~~~~~~ 397 (404)
+|.|+|++|+++.++ +|++++..+
T Consensus 338 ~L~Pirer~~~l~~d~~~l~~iL~~G 363 (389)
T PLN02886 338 HLSPIQVRYEEIMSDPSYLDSVLKEG 363 (389)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 999999999998864 899988753
No 14
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-56 Score=454.66 Aligned_cols=290 Identities=22% Similarity=0.270 Sum_probs=252.5
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccc------
Q 015582 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW------ 133 (404)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~------ 133 (404)
.|.+||+|++|++++++.+.+++++|+++|+||+|||++|||||++++++++|||++ |+.++++|||+|+...
T Consensus 8 ~l~~Rg~~~~~~~~~~l~~~~~~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~-G~~~~~ligd~ta~igDpsgk~ 86 (410)
T PRK13354 8 QLKWRGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDA-GHRPVILIGGFTGKIGDPSGKS 86 (410)
T ss_pred HHHHcCCchhcCCHHHHHHHHhcCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHc-CCeEEEEEcccccccCCCCccc
Confidence 456799999999999999888888999999999999988999999999999999997 4555666777776543
Q ss_pred --c-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCccchHHHHH-HHHhhcCHHHHHHh------hCCCCCccc
Q 015582 134 --K-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGI------FGFTGEDHI 203 (404)
Q Consensus 134 --~-~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~-~l~~~~t~~~~~~~------~g~~~~~~~ 203 (404)
| .++.+++++|+..+.+++.+ |+||++++|+.||+|+++..|..++ ++++++|+++|.++ ++.++++++
T Consensus 87 ~~R~~l~~e~i~~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~ 165 (410)
T PRK13354 87 KERKLLTDEQVQHNAKTYTEQIFK-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISF 165 (410)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHH-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCch
Confidence 2 38999999999877777666 8999999999999999888889999 59999999999763 333467899
Q ss_pred cccccccccchhhhhcCCCCCCCCccccCCCCccccc-ccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCC
Q 015582 204 GKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGK 282 (404)
Q Consensus 204 g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~v-p~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~K 282 (404)
++|+||+|| || |++.+..+++|.+ |+|.||++|++++||+|+|+|..+|..++.|+|++++| .|
T Consensus 166 ~ef~YpllQ-----a~--------D~~~l~~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG--~K 230 (410)
T PRK13354 166 TEFFYPLLQ-----AY--------DFVHLNRKEDVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADG--TK 230 (410)
T ss_pred hhhccHHHH-----hh--------hHHHHhccCCCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCC--Cc
Confidence 999999999 99 9998855556655 79999999999999999999998898888999999987 59
Q ss_pred CCCCCCCCeeeecCC---HHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcC-ChHHHHHHHHHHhcCCC
Q 015582 283 MSASDPNSAIYVTDS---AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGM 358 (404)
Q Consensus 283 MSkS~~nsaI~L~D~---~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~-~~~eleei~~~~~~G~~ 358 (404)
||||.+| +|||+|+ |+++++||++ + ||.++ ++||++|+. +.+++++|+++|+.|.
T Consensus 231 MsKS~~n-aI~L~d~~tsp~~i~qki~~-~-----------------~D~~v-~~~l~~~t~l~~~ei~~l~~~~~~~~- 289 (410)
T PRK13354 231 MGKSAGG-AIWLDPEKTSPYEFYQFWMN-I-----------------DDRDV-VKYLKLFTDLSPDEIDELEAQLETEP- 289 (410)
T ss_pred cCCCCCC-ceeccCCCCCHHHHHHHHHc-C-----------------ChHHH-HHHHHHHhCCCHHHHHHHHHHHhcCC-
Confidence 9999876 9999999 9999999998 2 45555 899999864 7899999999999984
Q ss_pred CHHHHHHHHHHHHHHHhhhHHHHHHHhhH
Q 015582 359 LTGEVKQRLAKVLTELVERHQVARAAVTD 387 (404)
Q Consensus 359 ~~~~lK~~La~~i~~~l~~~r~~~~~~~~ 387 (404)
+++++|+.||++|++++|+.+++.++...
T Consensus 290 ~~~~~Kk~LA~~v~~~vhg~~~~~~a~~~ 318 (410)
T PRK13354 290 NPRDAKKVLAEEITKFVHGEEAAEEAEKI 318 (410)
T ss_pred ChHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 59999999999999999999999887664
No 15
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-56 Score=450.29 Aligned_cols=283 Identities=19% Similarity=0.195 Sum_probs=240.2
Q ss_pred ceEEEEecCCCCCCcchhchHHHhhHHH--HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015582 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (404)
Q Consensus 85 ~~~iytG~~PTg~~lHlGh~v~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt 162 (404)
..++||||+||| .||||||++.+ .+| +|+..++.+++.|||+||++ +..+++++++++++++++|+|||+||+|+
T Consensus 2 ~~rvlSGiqPTG-~lHLGNylGai-k~~v~lq~q~~~~~~~~IADlHAlT-~~~dp~~lr~~~~e~aa~~LA~GlDPek~ 78 (431)
T PRK12284 2 TTRVLTGITTTG-TPHLGNYAGAI-RPAIAASRQPGVESFYFLADYHALI-KCDDPARIQRSTLEIAATWLAAGLDPERV 78 (431)
T ss_pred ceEEEEEecCCC-cchHHHHHHHH-HHHHHHHHhCCCcEEEEeechhhcc-CCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 357999999998 89999999995 445 55545778888899999998 45799999999999999999999999999
Q ss_pred EEEeCCccCcc--chHH-----HHHHHHhhcCHHHHHHhh---CCC--CCccccccccccccchhhhhcCCCCCCCCccc
Q 015582 163 FIFSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIF---GFT--GEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLF 230 (404)
Q Consensus 163 ~i~~~s~~~~~--~~~~-----~~~~l~~~~t~~~~~~~~---g~~--~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~ 230 (404)
.||.||+++++ .+|. .+.++.|+.++++..... |++ +++++|.|+||+|| || ||+
T Consensus 79 ~if~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLq-----AA--------DIL 145 (431)
T PRK12284 79 TFYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLM-----AA--------DIL 145 (431)
T ss_pred EEEECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHH-----Hh--------hhh
Confidence 99999999865 2222 245688888888765332 332 45799999999999 99 999
Q ss_pred cCCCCcccccccccCchhHHHHHHHHHhHhCC-------CCcceee---cccccCCCCCCCCCCCCCCCCeeeecCCHHH
Q 015582 231 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-------HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKA 300 (404)
Q Consensus 231 ~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~-------~kp~~l~---~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~ 300 (404)
.++++ +||||.||.||++||||||+|||+ +.|..+. +++||||+| +|||||.+| +|+|+|+|++
T Consensus 146 ly~ad---~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg--~KMSKS~~n-~I~L~Ds~~~ 219 (431)
T PRK12284 146 MFNAH---KVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDG--RKMSKSYDN-TIPLFAPREE 219 (431)
T ss_pred hcCCC---EEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCC--ccccCCCCC-EeeecCCHHH
Confidence 99985 899999999999999999999983 2454333 689999997 799999976 9999999999
Q ss_pred HHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHH
Q 015582 301 IKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQV 380 (404)
Q Consensus 301 i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~ 380 (404)
|++||++ |+||+..+. ..++|++|++++|+++|. +.+++++++++|..| ++|++||+.|++.|+++|.|+|+
T Consensus 220 I~kKI~~-A~TDs~~~~-----~~~~pe~snLl~i~~~~~-~~~~~eel~~~~~~g-~~~g~~K~~Lae~i~~~L~PiRe 291 (431)
T PRK12284 220 LKKAIFS-IVTDSRAPG-----EPKDTEGSALFQLYQAFA-TPEETAAFRQALADG-IGWGDAKQRLFERIDRELAPMRE 291 (431)
T ss_pred HHHHHhc-CCCCCCCCC-----CCCCCCcchHHHHHHHhC-CcchHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999986532 247899999999999995 346799999999866 99999999999999999999999
Q ss_pred HHHHhhHH--HHHHHHhcC
Q 015582 381 ARAAVTDE--MVDAFMAVR 397 (404)
Q Consensus 381 ~~~~~~~~--~~~~~~~~~ 397 (404)
+++++.++ +|++++..+
T Consensus 292 r~~~l~~d~~~l~~iL~~G 310 (431)
T PRK12284 292 RYEALIARPADIEDILLAG 310 (431)
T ss_pred HHHHHHcCHHHHHHHHHHH
Confidence 99999864 798888653
No 16
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.7e-55 Score=446.24 Aligned_cols=290 Identities=22% Similarity=0.286 Sum_probs=247.4
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCccccccc----
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK---- 134 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~---- 134 (404)
..|.+||++++|+|++++++.++ ++++++|+||+|||++|||||+++++.++|||++ |..++++|||+||.+..
T Consensus 8 ~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~dPTg~slHlGhlv~l~~l~~lQ~~-G~~~~~ligd~ta~igDpsgk 85 (408)
T PRK05912 8 EELKERGLIEQITDEEELEEKLA-KEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDA-GHKPIALIGGFTGMIGDPSGK 85 (408)
T ss_pred HHHHhCCCeeecCCHHHHHHHhh-CCCCEEEEeecCCCCCccHHhHHHHHHHHHHHHC-CCcEEEEEcCceeEcCCCCCC
Confidence 45666999999999999999987 6899999999999988999999999999999996 55566667888877632
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHcCCCCCc--eEEEeCCccCccchHHHHHH-HHhhcCHHHHHHh------hCCCCC
Q 015582 135 -----NLSVEESQRLARENAKDIIACGFDVTK--TFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGI------FGFTGE 200 (404)
Q Consensus 135 -----~~~~e~i~~~~~~~~~~ilA~G~dp~k--t~i~~~s~~~~~~~~~~~~~-l~~~~t~~~~~~~------~g~~~~ 200 (404)
.++.+++++|+.. +...+|+|+||++ +.||.||+|+++..|..+++ +++++|+++|.++ ++.+.+
T Consensus 86 ~~~r~~l~~e~i~~n~~~-i~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~~~~ 164 (408)
T PRK05912 86 SETRKLLTREQVAENAET-IKEQLFKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLREGQG 164 (408)
T ss_pred chhhccCCHHHHHHHHHH-HHHHHHHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhccCCC
Confidence 3689999999964 4667799999998 99999999998888888888 9999999999764 333468
Q ss_pred ccccccccccccchhhhhcCCCCCCCCccccCCCCccccc-ccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCC
Q 015582 201 DHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGE 279 (404)
Q Consensus 201 ~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~v-p~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~ 279 (404)
+|+|+|+||+|| || ||+.+..+++|.+ |+|.||++|++++||+|+|+|..++..++.|+||+++|
T Consensus 165 is~~ef~Yp~LQ-----a~--------D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G- 230 (408)
T PRK05912 165 ISFTEFLYPLLQ-----GY--------DFVALNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDG- 230 (408)
T ss_pred CchhhhhhHHHH-----Hh--------hHHHHhccCCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCC-
Confidence 999999999999 99 9988745555655 67999999999999999999987777788889999987
Q ss_pred CCCCCCCCCCCeeeecC---CHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcC-ChHHHHHHHHHHhc
Q 015582 280 TGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGA 355 (404)
Q Consensus 280 ~~KMSkS~~nsaI~L~D---~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~-~~~eleei~~~~~~ 355 (404)
+|||||.+ ++|||+| +|+++++||++ + .++++ ++||++|+. +.+++++|+++|++
T Consensus 231 -~KMsKS~~-naI~L~d~~tsp~~i~qki~~-~---------------~D~~v---~~~l~~~t~~~~~ei~~l~~~~~~ 289 (408)
T PRK05912 231 -KKMGKSEG-NAVWLDEEKTSPYEMYQKWMN-I---------------SDADV---WRYLKLLTFLSLEEIEELEEELAE 289 (408)
T ss_pred -CcccCCCC-CceeCCCCCCCHHHHHHHHhc-C---------------ChHHH---HHHHHHHhcCCHHHHHHHHHHHhc
Confidence 89999985 4999999 99999999999 2 13343 566666653 78899999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhH
Q 015582 356 GGMLTGEVKQRLAKVLTELVERHQVARAAVTD 387 (404)
Q Consensus 356 G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~ 387 (404)
|. +++++|+.||++|++++|+.+++.++...
T Consensus 290 g~-~~~~~Kk~LA~~v~~~lhg~~~~~~a~~~ 320 (408)
T PRK05912 290 GP-NPREAKKVLAEEITALVHGEEAAEAAEEA 320 (408)
T ss_pred CC-ChHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 86 99999999999999999999888776553
No 17
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=3.3e-55 Score=424.97 Aligned_cols=249 Identities=26% Similarity=0.352 Sum_probs=227.1
Q ss_pred EEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC---------CCHHHHHHHHHHHHHHHHHcCC
Q 015582 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGF 157 (404)
Q Consensus 87 ~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~---------~~~e~i~~~~~~~~~~ilA~G~ 157 (404)
++|+||+|||++|||||+++++.++|||++ |+.++|+|||+||++.++ .+++++++|+.+++++++|+|+
T Consensus 2 ~iy~G~~PTg~~lHLG~~~~~~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~ 80 (269)
T cd00805 2 KVYIGFDPTAPSLHLGHLVPLMKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILD 80 (269)
T ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 699999999889999999999999999996 889999999999998654 7999999999999999999999
Q ss_pred C--CCceEEEeCCccCccchHHHHHHHHhhcCHHHHHHhhCC------CCCccccccccccccchhhhhcCCCCCCCCcc
Q 015582 158 D--VTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHL 229 (404)
Q Consensus 158 d--p~kt~i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~------~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di 229 (404)
+ |+++.||.||+|+++.+|.+++++++++++++|.++.++ .+++|+|+|+||+|| || |+
T Consensus 81 ~~~p~k~~i~~~s~~~~~l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQ-----aa--------Di 147 (269)
T cd00805 81 FIPPEKAKFVNNSDWLLSLYTLDFLRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQ-----AY--------DF 147 (269)
T ss_pred cCCCcceEEEEchHhhccCCHHHHHHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-----Hh--------hH
Confidence 6 999999999999988899999999999999999987644 357899999999999 99 99
Q ss_pred ccCCCCcccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCe-eeecCCHHHHHHHhccc
Q 015582 230 FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKY 308 (404)
Q Consensus 230 ~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsa-I~L~D~~~~i~~KI~ky 308 (404)
+.+++ |++|+|.||+||++++||+|+|+++.+|..++++++|+|+| +|||||.+|+. |+++|+|++|++||++
T Consensus 148 ~~l~~---~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G--~KMSKS~~~~~~i~l~dsp~~i~~Ki~~- 221 (269)
T cd00805 148 VYLDV---DLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN- 221 (269)
T ss_pred HHHhC---CeeEecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccCCCC--CcccCCCCCcccccCCCCHHHHHHHHHc-
Confidence 98887 69999999999999999999999999999999999999998 69999999966 7999999999999999
Q ss_pred cccCCcchhHHHhhcCCCCcchhHHHHHHhhc-CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 015582 309 AFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 374 (404)
Q Consensus 309 A~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~ 374 (404)
|+|+ + +++|+++|+ .+++++++++++|++|.+ ++++|+.||++|+++
T Consensus 222 a~~~---------------~---v~~~l~~~~~~~~~~~eel~~~~~~~~~-~~~~K~~la~~i~~l 269 (269)
T cd00805 222 AFDP---------------D---VLEFLKLFTFLDYEEIEELEEEHAEGPL-PRDAKKALAEELTKL 269 (269)
T ss_pred CCcH---------------H---HHHHHHHHHcCCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhC
Confidence 9986 2 256666654 278999999999999976 999999999999864
No 18
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-53 Score=452.77 Aligned_cols=308 Identities=18% Similarity=0.228 Sum_probs=254.8
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhch-HHHhhHHHHHhhCCCeEEEEccCcccccccC--
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHL-VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~-v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 135 (404)
..+++||.-... ..++|.+.+++|+++++|+|++||| .|||||+ +..+...-+++ .|+.++++|||+||+++..
T Consensus 7 ~~ll~r~~~Evi-~~eeL~~ll~~~~~~rv~sGi~PTG-~lHLGng~~~aik~~~~~q-~g~~~~~lIAD~HAlt~~~~~ 83 (682)
T PTZ00348 7 YKLLRSVGEECI-QESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTQ-AGCEFVFWVADWFALMNDKVG 83 (682)
T ss_pred HHHHhcCceeec-CHHHHHHHHhcCCCCEEEEeeCCCC-cCeeccHHHHHHHHHHHHh-CCCeEEEEEcchhhhcCCCCC
Confidence 356677765444 4577777788888999999999998 7999994 44432222444 3788899999999998643
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC-cc--chHHHHHHHHhhcCHHHHHHh---hCCCC-Ccccccccc
Q 015582 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG--AFYKNMVKVAKCVTYNKVVGI---FGFTG-EDHIGKVSF 208 (404)
Q Consensus 136 ~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~-~~--~~~~~~~~l~~~~t~~~~~~~---~g~~~-~~~~g~~~Y 208 (404)
.+.++++.++.++++.|+|+|+||+|+.||.||+|. ++ .+|..++.+++++|++++++. +|+.+ ++++|+++|
T Consensus 84 ~~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~Y 163 (682)
T PTZ00348 84 GELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLY 163 (682)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhh
Confidence 588999988889999999999999999999999855 33 578889999999999999874 55544 489999999
Q ss_pred ccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCC-CCcceeecccccCCCCCCCCCCCCC
Q 015582 209 PPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASD 287 (404)
Q Consensus 209 pllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~-~kp~~l~~~~lp~L~G~~~KMSkS~ 287 (404)
|+|| || ||+.+++| ++|||.||+||++||||+|+++|. ++|.+++++++|||+|.++|||||+
T Consensus 164 PvLQ-----AA--------DIl~l~ad---ivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~ 227 (682)
T PTZ00348 164 PLMQ-----CA--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSD 227 (682)
T ss_pred hHHH-----hh--------cccccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCC
Confidence 9999 99 99989886 799999999999999999999995 4788888999999997668999999
Q ss_pred CCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCC----cchhHHHHHHhhcC--C-------h---HHHHHHHH
Q 015582 288 PNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANL----EVDIPVKYLSFFLE--D-------D---AELEHIKK 351 (404)
Q Consensus 288 ~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p----d~~v~~~~l~~f~~--~-------~---~eleei~~ 351 (404)
|+|+|||+|+|++|++||++ |||++..........+|+| +.++++.|++++.. . + ++++++++
T Consensus 228 p~naI~L~Dspe~I~kKI~k-A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i~~~~~~~~eele~ 306 (682)
T PTZ00348 228 PDSAIFMEDTEEDVARKIRQ-AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATIDGTTYATYEDLEQ 306 (682)
T ss_pred CCCeecccCCHHHHHHHHHh-CCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhcccCCcccCcHHHHHH
Confidence 98899999999999999999 9998742100111345666 67888999888631 1 2 67899999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 015582 352 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 386 (404)
Q Consensus 352 ~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~ 386 (404)
+|++|.+++++||+.||+.|+++|.|+|++++.-.
T Consensus 307 ~y~~g~l~~~dlK~~lae~l~~~L~PIRe~~~~~~ 341 (682)
T PTZ00348 307 AFVSDEVSEEALKSCLIDEVNALLEPVRQHFASNP 341 (682)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 99999999999999999999999999999998654
No 19
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=3.9e-55 Score=429.19 Aligned_cols=273 Identities=33% Similarity=0.499 Sum_probs=236.8
Q ss_pred hCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC--CCHHHHHHHHHHHHHH--HHHcCC
Q 015582 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKD--IIACGF 157 (404)
Q Consensus 82 ~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~--~~~e~i~~~~~~~~~~--ilA~G~ 157 (404)
+++++++||||+||| .|||||+++++.+.|||+ .|+.++|+|||+||++.++ .+++.++.++.+++.. ++|+|+
T Consensus 2 ~~~~~~~y~G~~PTg-~lHlG~l~~~~~~~~lq~-~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~ 79 (292)
T PF00579_consen 2 ENKPFRVYTGIDPTG-DLHLGHLVPIMKLIWLQK-AGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGL 79 (292)
T ss_dssp THSSEEEEEEEESSS-S-BHHHHHHHHHHHHHHH-TTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEeECCCC-cccchHHHHHHHHHHHHh-cCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 468999999999999 599999999999999999 5999999999999998765 4899999999988888 999999
Q ss_pred CCCceEEEeCCccCccc-hHHHHHHHHhhcCHHHHHH------hhCCCCCccccccccccccchhhhhcCCCCCCCCccc
Q 015582 158 DVTKTFIFSDFDYVGGA-FYKNMVKVAKCVTYNKVVG------IFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLF 230 (404)
Q Consensus 158 dp~kt~i~~~s~~~~~~-~~~~~~~l~~~~t~~~~~~------~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~ 230 (404)
||+++.||.||+|.++. ++..+..+++..+++++.+ +++.++++++|+|+||+|| || |++
T Consensus 80 d~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQ-----aa--------D~~ 146 (292)
T PF00579_consen 80 DPEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQ-----AA--------DIL 146 (292)
T ss_dssp HTTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHH-----HH--------HHH
T ss_pred CccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEccccc-----cc--------cee
Confidence 99999999999998653 3344444666666655544 4555568999999999999 99 999
Q ss_pred cCCCCcccccccccCchhHHHHHHHHHhHhCCC----CcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhc
Q 015582 231 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH----KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 306 (404)
Q Consensus 231 ~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~----kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~ 306 (404)
.++++ ++|||.||++|++++||+|+|+|.. +|+.++++++|+|+|. +|||||++|++|||+|++++|++||+
T Consensus 147 ~l~~~---~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~-~KMSKS~~ns~I~L~d~~~~i~~Ki~ 222 (292)
T PF00579_consen 147 LLKAD---LVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQ-KKMSKSDPNSAIFLDDSPEEIRKKIK 222 (292)
T ss_dssp HTTHS---EEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSS-SBTTTTTTGGS-BTTTTHHHHHHHHH
T ss_pred eeccc---cccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCc-cccCccCCccEEEEeccchhHHHHHH
Confidence 99885 8999999999999999999999987 9999999999999984 49999999999999999999999999
Q ss_pred cccccCCcchhHHHhhcCCCCcchh-HHHHHHhhcCCh--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 015582 307 KYAFSGGQESVELHRKLGANLEVDI-PVKYLSFFLEDD--AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 376 (404)
Q Consensus 307 kyA~t~~~~t~e~~~~~g~~pd~~v-~~~~l~~f~~~~--~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~ 376 (404)
+ |+|++.. +.++..++.|.+++ +++++..+..++ .+++++.++|.+|.++++++|++++++++++|+
T Consensus 223 ~-a~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 223 K-AFCDPDR--ENPRLLKGRPFISPFLIERLEAFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp H-SHTSTTS--HHHHHHHHHHTHHHHHHHHHHHHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred H-HhhCCCc--ccccccccCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 9 9999987 55667778888888 788888775333 378999999999999999999999999999874
No 20
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.8e-53 Score=413.41 Aligned_cols=251 Identities=20% Similarity=0.271 Sum_probs=219.8
Q ss_pred EEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC---------CCHHHHHHHHHHHHHHHHHcCC
Q 015582 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGF 157 (404)
Q Consensus 87 ~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~---------~~~e~i~~~~~~~~~~ilA~G~ 157 (404)
.+|+||+|||++|||||++|++.++|||++ |+.++++|||+||++..+ ++.+++++|+.+++++++|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~l~~~~~lq~~-g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIGLLTFRRFQHA-GHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHHHHHHHHHHHC-CCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 489999999978999999999899999995 777888899999997542 2899999999999999999999
Q ss_pred C--CCceEEEeCCccCcc-chHHHHHHHHhhcCHHHHHHhhCCC----CCccccccccccccchhhhhcCCCCCCCCccc
Q 015582 158 D--VTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGFT----GEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLF 230 (404)
Q Consensus 158 d--p~kt~i~~~s~~~~~-~~~~~~~~l~~~~t~~~~~~~~g~~----~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~ 230 (404)
| |++++||.||+|++. .++..+..+++++|+++|+++.+++ .++++|+|+||+|| || ||+
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQ-----aa--------D~l 146 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQ-----AA--------DFL 146 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHH-----HH--------HHH
Confidence 9 999999999999865 4455555699999999999987764 37899999999999 99 999
Q ss_pred cCCCCccc-ccccccCchhHHHHHHHHHhHhC-CCCcceeecccccCCCCCCCCCCCCCCCCeee---ecCCHHHHHHHh
Q 015582 231 SGKDHLRC-LIPCAIDQDPYFRMTRDVAPRIG-YHKPALIESSFFPALQGETGKMSASDPNSAIY---VTDSAKAIKNKI 305 (404)
Q Consensus 231 ~~~~~~~~-~vp~G~DQd~~~~l~rdla~r~~-~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~---L~D~~~~i~~KI 305 (404)
.++++++| ++|+|.||+||++++||+|+|+| +++|..++.++||+|+| .|||||.+| +|| ++|+|++|++||
T Consensus 147 ~l~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G--~KMSKS~~~-~i~l~~~~dsp~~i~~ki 223 (273)
T cd00395 147 LLNTTEGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDG--PKFGKSESG-PKWLDTEKTSPYEFYQFW 223 (273)
T ss_pred HHhcccCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCC--CcCCCCCCC-CccccccCCCHHHHHHHH
Confidence 88877777 89999999999999999999997 57898899999999998 599999998 666 589999999999
Q ss_pred ccccccCCcchhHHHhhcCCCCcchhHHHHHHhhc-CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 015582 306 NKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 374 (404)
Q Consensus 306 ~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~ 374 (404)
++ |+ .+.++.|+++|+ .+.+++++|++++.+| .+.+++|+.||++|+++
T Consensus 224 ~~-a~------------------d~~v~~~~~~~t~~~~~ei~~i~~~~~~~-~~~~~~K~~La~~i~~~ 273 (273)
T cd00395 224 IN-AV------------------DSDVINILKYFTFLSKEEIERLEQEQYEA-PGYRVAQKTLAEEVTKT 273 (273)
T ss_pred Hc-cc------------------HhHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhC
Confidence 99 76 123478888775 4789999999999887 47899999999999874
No 21
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-49 Score=369.34 Aligned_cols=286 Identities=22% Similarity=0.316 Sum_probs=244.3
Q ss_pred ceEEEEecCCCCCCcchhchHHHhhHHH--HHhhCCC--eEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 015582 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKV--PLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVT 160 (404)
Q Consensus 85 ~~~iytG~~PTg~~lHlGh~v~~~~~~~--lQ~~~~~--~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~ 160 (404)
|-++++|++||| ++|||||++.+ ..| ||+..+. .+.+.|+|.||.+....+. +++++..+.++.++|||+||+
T Consensus 13 ~~rvfSGIQPTG-~~HLGNYLGai-~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~-~lrq~~~dm~A~lLAcGIdp~ 89 (347)
T KOG2713|consen 13 PKRVFSGIQPTG-IPHLGNYLGAI-KPWVQLQNEYDKNILVLFSVVDLHAITVPQDPA-ELRQATHDMAASLLACGIDPE 89 (347)
T ss_pred cceeEeccCCCC-Cchhhhhhhhh-hHHHHHHHHhcCCceEEEEEeeceeecCCCChH-HHHHHHHHHHHHHHHhccCcc
Confidence 568999999998 99999999994 788 8887543 4566689999997644444 999999999999999999999
Q ss_pred ceEEEeCCccCcc---chHH----HHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCC
Q 015582 161 KTFIFSDFDYVGG---AFYK----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGK 233 (404)
Q Consensus 161 kt~i~~~s~~~~~---~~~~----~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~ 233 (404)
|+.+|.||+++.| .|++ .+.+++|++.|++...+++. +..++|.|+||+|| || ||+.|+
T Consensus 90 Ks~lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~-~~~~vGLftYPvLq-----AA--------DILLYk 155 (347)
T KOG2713|consen 90 KSSLFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKV-GDVPVGLFTYPVLQ-----AA--------DILLYK 155 (347)
T ss_pred cceeeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhcc-CccceeeecchhHh-----hh--------hHhhhc
Confidence 9999999999875 3333 26789999999988876553 56799999999999 99 999999
Q ss_pred CCcccccccccCchhHHHHHHHHHhHhCC-------CCcceee---cccccCCCCCCCCCCCCCCC--CeeeecCCHHHH
Q 015582 234 DHLRCLIPCAIDQDPYFRMTRDVAPRIGY-------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAI 301 (404)
Q Consensus 234 ~~~~~~vp~G~DQd~~~~l~rdla~r~~~-------~kp~~l~---~~~lp~L~G~~~KMSkS~~n--saI~L~D~~~~i 301 (404)
++ .||||.||-||++|+|++|+++|. +.|..+. +..+.+|..|.+|||||+|| +.|.|+|+|+.|
T Consensus 156 sT---hVPVGeDQsQHleL~r~lA~~fN~~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I 232 (347)
T KOG2713|consen 156 ST---HVPVGEDQSQHLELARHLAQAFNKTYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLI 232 (347)
T ss_pred cc---cccCCccHHHHHHHHHHHHHHHhhhccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHH
Confidence 85 699999999999999999999984 4554443 67899999999999999987 699999999999
Q ss_pred HHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHH
Q 015582 302 KNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVA 381 (404)
Q Consensus 302 ~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~ 381 (404)
.+||+| |.|+....+. .+.+++|.+.++..++... ++.+++++.+.+++ +.+++.|..||++|.+-|.|+|++
T Consensus 233 ~~Ki~k-a~TD~~~~vt--Yd~~~RpgvsNLlni~aaV--t~~s~eeV~~~~a~--~~~~~fK~~vaeAvie~L~PIr~~ 305 (347)
T KOG2713|consen 233 VKKIKK-AQTDNTSGVT--YDPANRPGVSNLLNIYAAV--TGKSIEEVVEESAN--MSTADFKDNVAEAVIEHLAPIRTE 305 (347)
T ss_pred HHHHHH-Hhccccccee--eCCccccchhHHHHHHHHH--cCCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHhccHHHH
Confidence 999999 9999654333 4667899999888888877 56788999987764 899999999999999999999999
Q ss_pred HHHhhHH--HHHHHHhcC
Q 015582 382 RAAVTDE--MVDAFMAVR 397 (404)
Q Consensus 382 ~~~~~~~--~~~~~~~~~ 397 (404)
+++...+ +|++++..+
T Consensus 306 fee~~~~~~~l~kvl~~G 323 (347)
T KOG2713|consen 306 FEELINEPEYLDKVLEEG 323 (347)
T ss_pred HHHHhcCHHHHHHHHHHh
Confidence 9999864 888888754
No 22
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=7.8e-47 Score=381.62 Aligned_cols=281 Identities=25% Similarity=0.284 Sum_probs=233.7
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC---
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~--- 135 (404)
..+.+||++..+++.+.+.+.+++ ++++|+||+|||++|||||+++++.+++||++ |+.++++|||+|+++.++
T Consensus 6 ~~l~~rg~~~~~t~~~~l~~ll~~--~~~vy~G~dPTg~~lHlGh~v~l~~l~~lq~~-G~~~~iligd~ta~igdpsg~ 82 (377)
T TIGR00234 6 LLLKKRGLEVQVPEEEELLKLLER--KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQA-GHEVIVLLGDATALIGDPSGK 82 (377)
T ss_pred HHHHHCCCEEEcCCHHHHHHHhcC--CCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEeccchhhcCCCCh
Confidence 567899999999998877776654 89999999999989999999999999999996 667777799999987643
Q ss_pred ------CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCccchHHH-HHHHHhhcCHHHHHHhhCCC----CCcccc
Q 015582 136 ------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN-MVKVAKCVTYNKVVGIFGFT----GEDHIG 204 (404)
Q Consensus 136 ------~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~-~~~l~~~~t~~~~~~~~g~~----~~~~~g 204 (404)
++.+++++|+ ++++.++|+|+||+++.|+.||+|.....|.. +.++++++|+++|+++.++. ++++++
T Consensus 83 ~~~R~~~~~~~i~~n~-~~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~~~is~~ 161 (377)
T TIGR00234 83 SEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLERGISLS 161 (377)
T ss_pred HHHhhcCCHHHHHHHH-HHHHHHHHHhCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHHhcCCCch
Confidence 6788888888 77888999999999999999999997654444 45599999999999986652 469999
Q ss_pred ccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCC
Q 015582 205 KVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMS 284 (404)
Q Consensus 205 ~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMS 284 (404)
+|+||+|| || |++.+.+| ++++|.||++|++.+||+|+|++...+..++.+++++++| .|||
T Consensus 162 ef~YpllQ-----a~--------D~~~l~~d---i~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg--~Kmg 223 (377)
T TIGR00234 162 EFIYPLLQ-----AY--------DFVYLNVD---LQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADG--EKMG 223 (377)
T ss_pred hhhhHHHH-----HH--------HHHHHcCC---eeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCC--CCcc
Confidence 99999999 99 99999886 8999999999999999999999876677777888888885 8999
Q ss_pred CCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcC-ChHHHHHHHHHHhcCCCCHHHH
Q 015582 285 ASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEV 363 (404)
Q Consensus 285 kS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~-~~~eleei~~~~~~G~~~~~~l 363 (404)
||.+| +||+++++ |.+++++.+ .|| +++.+|+++|+. +.+++++|.+ ..+ .+++++
T Consensus 224 KS~~~-~i~l~~~~---------~~~~i~~~d---------~~D-~~~~Ki~k~~t~~~~~ei~~l~~--~~~-~~~~~~ 280 (377)
T TIGR00234 224 KSGGG-AVSLDEGK---------YDFYQFWIN---------TPD-EDVKKILKLFTFLGLEEIEALVE--LKG-PSPREV 280 (377)
T ss_pred CCCCC-cccCCccH---------hhhhhhhcC---------CcH-HHHHHHHHHcCCCcHHHHHHHHH--hcc-cCHHHH
Confidence 99887 89998854 566666553 233 344677777653 5678888865 334 689999
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 015582 364 KQRLAKVLTELVERHQVARAA 384 (404)
Q Consensus 364 K~~La~~i~~~l~~~r~~~~~ 384 (404)
|+.||.++++++|+.....++
T Consensus 281 q~~la~ei~~~vhg~~~~~~a 301 (377)
T TIGR00234 281 KENLAKEITKYVHGEEAALAA 301 (377)
T ss_pred HHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999997776544
No 23
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-45 Score=370.60 Aligned_cols=299 Identities=25% Similarity=0.336 Sum_probs=249.6
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC-CC
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LS 137 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-~~ 137 (404)
..|+.||++...++.+.+.+.++++ ++.+|+||+|||+++||||+++++++++||++ |+.++++|||+|+++.++ ..
T Consensus 7 ~~L~~Rg~~~~i~~ee~l~~ll~~~-~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~a-Gh~~ivLigd~ta~IgDpsGk 84 (401)
T COG0162 7 LELIKRGLIEQITDEEELRKLLEEG-PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDA-GHKPIVLIGDATAMIGDPSGK 84 (401)
T ss_pred HHHHHcCchhccCcHHHHHHHHhcC-CceEEEeeCCCCCccchhhHHHHHHHHHHHHC-CCeEEEEecccceecCCCCCC
Confidence 5788999999999999888888775 99999999999999999999999999999997 666777789999998765 55
Q ss_pred HHHHHHHHH----HHHHHHH-HcCCCCC-ceEEEeCCccCccchHHHHH-HHHhhcCHHHHHHhhCC------CCCcccc
Q 015582 138 VEESQRLAR----ENAKDII-ACGFDVT-KTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFGF------TGEDHIG 204 (404)
Q Consensus 138 ~e~i~~~~~----~~~~~il-A~G~dp~-kt~i~~~s~~~~~~~~~~~~-~l~~~~t~~~~~~~~g~------~~~~~~g 204 (404)
.++++.++. +|++.+. ++|..++ ++.++.||+|....-|.+++ ++++++|+++|+++..+ ++++++.
T Consensus 85 ~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~is~~ 164 (401)
T COG0162 85 SEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISFT 164 (401)
T ss_pred HHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhccCCCCchh
Confidence 566555553 5555555 4676666 99999999999765555555 59999999999986533 3579999
Q ss_pred ccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCC
Q 015582 205 KVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMS 284 (404)
Q Consensus 205 ~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMS 284 (404)
+|.||+|| || |++.++.| +..+|.||+.++.++||+++|+|..++.+++.|+|++++| +|||
T Consensus 165 Ef~YpLmQ-----ay--------D~~~L~~d---lq~GG~DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG--~Kmg 226 (401)
T COG0162 165 EFNYPLLQ-----AY--------DFVYLNKD---LQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDG--KKMG 226 (401)
T ss_pred hhhhHHHH-----HH--------HHHHHccc---hhcCChHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCC--Cccc
Confidence 99999999 99 99999986 5567888888888889999999999999999999999998 5999
Q ss_pred CCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhc-CChHHHHHHHHHHhcCCCCHHHH
Q 015582 285 ASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEV 363 (404)
Q Consensus 285 kS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~l 363 (404)
||.+| ++|++. ++.++|+++|+|.+++ |.+ +..|+.+++ .+.+++++|.+....+. ++.++
T Consensus 227 Ks~~~-a~~~~s------~~~Sp~~~yq~~~~i~---------D~~-~~~~~~~~t~l~~~eI~~i~~~~~~~~-~~r~~ 288 (401)
T COG0162 227 KSEGG-AVWLDS------EKTSPYDFYQYWMNIE---------DAD-VKRFLKLLTFLSLEEIEEIEKYVLKGP-EPREA 288 (401)
T ss_pred ccCCC-ceEccC------CCCCcHhhhhcHhcCc---------HHH-HHHHHHHhCcCChHHHHHHHHHhhcCC-ChHHH
Confidence 99998 999998 8889999999998753 443 468888774 35589999999888885 89999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcC
Q 015582 364 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 397 (404)
Q Consensus 364 K~~La~~i~~~l~~~r~~~~~~~~~~~~~~~~~~ 397 (404)
|+.||.+++..+|+-....++... .+..+..+
T Consensus 289 k~~LA~e~~~~~hG~~~a~~a~~~--~~~~F~~g 320 (401)
T COG0162 289 KKLLAKEVTKLVHGEEAAEAAEEE--FEKLFSEG 320 (401)
T ss_pred HHHHHHHhhHhhcCHHHHHHHHHH--HHHHHhcC
Confidence 999999999999999888877654 55555444
No 24
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-42 Score=325.42 Aligned_cols=300 Identities=21% Similarity=0.239 Sum_probs=238.0
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC-CC
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LS 137 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-~~ 137 (404)
-.+++|++=. +-..+.|.+.+++ +.+.+|+|+.||| +||+|.++|++.++.|-++ ||.|.|++||+||++++. .+
T Consensus 10 ~~lItrnlqE-~lgee~lk~iL~e-r~l~~YwGtaptG-rpHiay~vpm~kiadflkA-GC~VtIl~AD~hA~LdNmkap 85 (360)
T KOG2144|consen 10 YKLITRNLQE-VLGEEELKNILAE-RALKCYWGTAPTG-RPHIAYFVPMMKIADFLKA-GCEVTILFADLHAFLDNMKAP 85 (360)
T ss_pred HHHHHHHHHH-HhCHHHHHHHHhc-cCceeeecCCCCC-CcceeeeeehhHHHHHHhc-CCeEEEEehHHHHHHhcccch
Confidence 3455555421 1223445555566 7889999999998 9999999999988888885 999999999999999874 78
Q ss_pred HHHHHHHHHHHHHHHHH----cCCCCCceEEEeCCccCc-cchHHHHHHHHhhcCHHHHHHh--hCCC--CCcccccccc
Q 015582 138 VEESQRLARENAKDIIA----CGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKCVTYNKVVGI--FGFT--GEDHIGKVSF 208 (404)
Q Consensus 138 ~e~i~~~~~~~~~~ilA----~G~dp~kt~i~~~s~~~~-~~~~~~~~~l~~~~t~~~~~~~--~g~~--~~~~~g~~~Y 208 (404)
++.+.+.+.++-+.|.| .+.+.++..+..-|++-. ..|-.++.++.+.+|-..++.. .+.+ +...++.+.|
T Consensus 86 ~e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~agaevvkqve~plls~llY 165 (360)
T KOG2144|consen 86 DELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGAEVVKQVENPLLSGLLY 165 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhhhHHHhhcchhhhhhhh
Confidence 88888888776665553 345556655554455543 3455677888888888777653 3332 4567888999
Q ss_pred ccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCC
Q 015582 209 PPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 288 (404)
Q Consensus 209 pllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~ 288 (404)
|.|| |+ |++.+..| ..++|.||+..+.++|++.+.+|++||.+++++++|||++ |+|||||+|
T Consensus 166 P~MQ-----al--------De~~L~vD---~qfgGvDQRKIf~~A~eylp~l~ykKrihLmnpMvPGL~q-~~KMSsSd~ 228 (360)
T KOG2144|consen 166 PGMQ-----AL--------DEFYLEVD---AQFGGVDQRKIFVLAEEYLPDLGYKKRIHLMNPMVPGLAQ-GEKMSSSDP 228 (360)
T ss_pred hhHH-----Hh--------hHHHHhhh---HHhcCccHHHHHHHHHHhhhhhCcccceeecCCCCccccc-cCccccCCc
Confidence 9999 99 99989987 5789999999999999999999999999999999999997 699999999
Q ss_pred CCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchh----HHHHHHhhcC-------------ChHHHHHHHH
Q 015582 289 NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI----PVKYLSFFLE-------------DDAELEHIKK 351 (404)
Q Consensus 289 nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v----~~~~l~~f~~-------------~~~eleei~~ 351 (404)
+|+|+|.|+|++|.+||++ |||.+... .+|+.... +|.++..|.. ...++|++++
T Consensus 229 ~SkIdllD~~~~V~kKI~k-AfCePg~v-------e~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed~e~ 300 (360)
T KOG2144|consen 229 LSKIDLLDEPADVNKKIKK-AFCEPGNV-------EGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYEDIEK 300 (360)
T ss_pred ccccccccCHHHHHHHHHH-hcCCCCCc-------CCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHHHHH
Confidence 9999999999999999999 99998653 35776443 2333333210 3578999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhH
Q 015582 352 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 387 (404)
Q Consensus 352 ~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~ 387 (404)
+|.+|++||+|||+.|+.+|+++|.++|+..+...+
T Consensus 301 ~y~~~~lhPgDLK~~l~~alN~lL~~ir~~~~~~~~ 336 (360)
T KOG2144|consen 301 DYEEGELHPGDLKKGLEKALNELLQPIREEFSNWPE 336 (360)
T ss_pred HHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 999999999999999999999999999998877444
No 25
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-40 Score=319.77 Aligned_cols=290 Identities=19% Similarity=0.248 Sum_probs=224.3
Q ss_pred hhHHhcCcccccCCHH---HHHHHHH-hCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEE------ccCc
Q 015582 59 HVFLRRGVFFAHRDLN---DILDAYE-KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQ------LTDD 128 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~---~ll~~~~-~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~------I~D~ 128 (404)
-.+..||+| ++.-.+ ...+.+. .|-|.+||+|||||++|+|+||++++|-+.|+|.+++.++.++ ||||
T Consensus 34 ~~l~aR~l~-~~s~Pet~~~~~~~L~~rglp~~vYcGfDPTA~SLHvGNLl~lm~L~hfqr~Gh~~ialIGgATa~vGDP 112 (467)
T KOG2623|consen 34 TELKARGLF-QTSFPETLSKCSEDLNGRGLPQYVYCGFDPTAESLHVGNLLALMVLIHFQRAGHRPIALIGGATASVGDP 112 (467)
T ss_pred HHHHhcccc-cccCCCccchhhhhhhcCCCCceEEecCCCcHHhhhhcchHHHHHHHHHHHcCCCceEEeccccccccCC
Confidence 467789987 443322 2333444 4458999999999999999999999999999999988888775 8999
Q ss_pred ccc-cccC-CCHHHHHHHHHHHHHHHH---H-------cCCCCCceEEEeCCccCccchHHHHHH-HHhhcCHHHHHHh-
Q 015582 129 EKC-MWKN-LSVEESQRLARENAKDII---A-------CGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGI- 194 (404)
Q Consensus 129 ~a~-~~~~-~~~e~i~~~~~~~~~~il---A-------~G~dp~kt~i~~~s~~~~~~~~~~~~~-l~~~~t~~~~~~~- 194 (404)
++. +.|+ +.-+.+++|++.....+. + +|..-.+-+|++|++|.+..-+.+++. +++++.+..|.++
T Consensus 113 SGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~ 192 (467)
T KOG2623|consen 113 SGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARD 192 (467)
T ss_pred CCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHH
Confidence 975 5554 777777777754433332 2 244335679999999997766666664 7788777777664
Q ss_pred -----hCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHH--HHHHhHhCCCCcce
Q 015582 195 -----FGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT--RDVAPRIGYHKPAL 267 (404)
Q Consensus 195 -----~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~--rdla~r~~~~kp~~ 267 (404)
+...+++|++||+|.+|| || |++++-.+++|.+|+|+. |||++++ .|+++|+-..+ +.
T Consensus 193 SV~~RLes~~GlSftEFtYQ~lQ-----AY--------Dfy~L~~~~g~~~QlGGs-DQwGNitaG~dlI~ki~~~~-~~ 257 (467)
T KOG2623|consen 193 SVKSRLESPNGLSFTEFTYQLLQ-----AY--------DFYHLYENYGCRFQLGGS-DQWGNITAGTDLIRKIMPIQ-AF 257 (467)
T ss_pred HHHHhhcCCCCCcHHHHHHHHHH-----HH--------hHHHHHHhcCeeEEeccc-ccccccchHHHHHHHhcccc-cc
Confidence 566789999999999999 99 999888889999997665 5555555 99999975321 44
Q ss_pred eecccccCCCCC-CCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhc-CChHH
Q 015582 268 IESSFFPALQGE-TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAE 345 (404)
Q Consensus 268 l~~~~lp~L~G~-~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~-~~~~e 345 (404)
.++.++|.|+.+ |.|++||.+| ||||+. .|.++|++||++.. -||.++ .++|+.|+ .+.++
T Consensus 258 vfGlT~PLlTsstG~KlGKSaGn-AvWLdp------~~tspy~lYQfF~~---------~pDd~v-~k~LklfTfl~l~e 320 (467)
T KOG2623|consen 258 VFGLTFPLLTSSTGAKLGKSAGN-AVWLDP------SKTSPYHLYQFFAS---------LPDDDV-EKFLKLFTFLPLEE 320 (467)
T ss_pred eeeeeeeeEecCcchhhccCCCc-eEEecC------ccCCcHHHHHHHHh---------CchhHH-HHHHHHHhcCCHHH
Confidence 566666666543 6999999999 999999 99999999999875 477665 57777764 38899
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHH
Q 015582 346 LEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVAR 382 (404)
Q Consensus 346 leei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~ 382 (404)
+++|.+++.+. +..+-.++.||++|++++|+...-.
T Consensus 321 I~~I~~~H~k~-P~~r~aQ~~LA~eVTr~VHG~egL~ 356 (467)
T KOG2623|consen 321 IKQILEEHRKE-PSQRIAQKLLAAEVTRMVHGKEGLE 356 (467)
T ss_pred HHHHHHHHhcC-hhhhhHHHHHHHHHHHHHcccchHH
Confidence 99999999876 6889999999999999999976543
No 26
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2e-34 Score=306.96 Aligned_cols=243 Identities=14% Similarity=0.170 Sum_probs=209.7
Q ss_pred HHHHhhCCCeEEEEccCcccccccC--CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC-c--cchHHHHHHHHhh
Q 015582 111 KYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-G--GAFYKNMVKVAKC 185 (404)
Q Consensus 111 ~~lQ~~~~~~v~I~I~D~~a~~~~~--~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~-~--~~~~~~~~~l~~~ 185 (404)
..|+++.||.++|+||||||+++++ .++++|+..++++++.|.|+|+|++ +.++..|+.. + +.||..+++++++
T Consensus 400 ~~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~ 478 (682)
T PTZ00348 400 DFIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARK 478 (682)
T ss_pred HHHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHh
Confidence 3478888999999999999999876 8999999999999999999999998 8666666665 3 2899999999999
Q ss_pred cCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCCCc
Q 015582 186 VTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP 265 (404)
Q Consensus 186 ~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp 265 (404)
+|++++++..| .+..+++++.||+|| ++ |++.++.| +..+|.||+..++++|+++++..+ |
T Consensus 479 ~tl~r~~r~~g-~~~~~~s~~iYP~MQ-----~~--------Di~~L~~d---i~~gG~DQRki~mlAre~~~~~~~--~ 539 (682)
T PTZ00348 479 NLLSHVEELYG-GELRNAGQVIAALMR-----VA--------TALMLSAS---HVISTSLDGGINEFAREYTKGRIE--C 539 (682)
T ss_pred ccHHHHHHHhc-CCcccHHHHHHHHHH-----HH--------HHHhcCCC---eeecChhHHHHHHHHHHhcccccc--c
Confidence 99999999887 566699999999999 99 99999987 578999999999999999996543 4
Q ss_pred ceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHH-Hhh---c-
Q 015582 266 ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL-SFF---L- 340 (404)
Q Consensus 266 ~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l-~~f---~- 340 (404)
..+++.++|+|.++..+|++|+++|+|||+|++++|++||++ |||.... .+||..+++ +|+ ..+ .
T Consensus 540 ~~~~~~~~p~l~~~~~~~~~~s~~s~i~~~D~~~~i~~Ki~k-A~Cpp~~--------~~Npvl~~~-~y~~~~~~~~~i 609 (682)
T PTZ00348 540 IQALEGRVPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNE--------EANPVISVA-QHLLAQQGALSI 609 (682)
T ss_pred hhhcCCCCccccccccccCCCCCCCeeeecCCHHHHHHHHHh-CCCCCCC--------CCCcHHHHH-HHHhcCCCeEEE
Confidence 446788999999777889998889999999999999999999 9998732 258876553 443 111 1
Q ss_pred C---------ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHH
Q 015582 341 E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 383 (404)
Q Consensus 341 ~---------~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~ 383 (404)
+ ...++++|+++|.+|++||.|||.++|+.|+++|+|+|+.++
T Consensus 610 ~R~e~~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 610 ERGEANGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred ecccccCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 246799999999999999999999999999999999999997
No 27
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.32 E-value=4.2e-12 Score=111.75 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=55.2
Q ss_pred cccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCC-CcceeecccccCCCCCCCCCCCC
Q 015582 208 FPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSAS 286 (404)
Q Consensus 208 YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~-kp~~l~~~~lp~L~G~~~KMSkS 286 (404)
|++.| +| |++.+.....+++++|.||.+|++..++++++++.. +|..++..+|++..| +|||||
T Consensus 78 y~~~~-----~a--------~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g--~KmSks 142 (143)
T cd00802 78 YMFLQ-----AA--------DFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADG--TKMSKS 142 (143)
T ss_pred HHHHH-----HH--------HHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCC--CcCCCC
Confidence 99999 99 777666544568899999999999999999999754 688888889988875 799998
Q ss_pred C
Q 015582 287 D 287 (404)
Q Consensus 287 ~ 287 (404)
.
T Consensus 143 ~ 143 (143)
T cd00802 143 K 143 (143)
T ss_pred C
Confidence 4
No 28
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.21 E-value=7.8e-11 Score=112.53 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=110.2
Q ss_pred CCCCCCcchhchHHHhhHHHH-HhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 015582 93 GPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 164 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~-------i 164 (404)
.||| .|||||+..++ .+|+ .+..|..+++-|-|.. ...+. ..+...+.+++..+|+++++.. +
T Consensus 9 sPtG-~LHlG~~~~al-~n~l~ar~~~G~~ilRieDtd----~~r~~---~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~ 79 (239)
T cd00808 9 SPTG-FLHIGGARTAL-FNYLFARKHGGKFILRIEDTD----QERSV---PEAEEAILEALKWLGLDWDEGPDVGGPYGP 79 (239)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCeEEEEECcCC----CCCCc---hHHHHHHHHHHHHcCCCCCcCCccCCCCCC
Confidence 4777 89999999995 6774 3334666777677732 12222 2333456677778899998742 7
Q ss_pred EeCCccCccchHHHHH-HHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccc
Q 015582 165 FSDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCA 243 (404)
Q Consensus 165 ~~~s~~~~~~~~~~~~-~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G 243 (404)
|.||+-. ..|..++ ++- + .| -|..+|++.+ ++ |-...+. +.|+.|
T Consensus 80 ~~QS~r~--~~y~~~~~~L~---------~-~g------dg~ptY~~a~-----~v--------DD~~~~i---thViRG 125 (239)
T cd00808 80 YRQSERL--EIYRKYAEKLL---------E-KG------DGFPTYHLAN-----VV--------DDHLMGI---THVIRG 125 (239)
T ss_pred EeeeCCH--HHHHHHHHHHH---------H-cC------CCCcccccHH-----HH--------hHHhcCC---CEEEEC
Confidence 8888643 3333332 221 1 11 2778999999 99 7666666 468999
Q ss_pred cCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCee
Q 015582 244 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 292 (404)
Q Consensus 244 ~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI 292 (404)
.|+..+....+.+++.+|.+.|...+.+.+++.+| .||||+.++.+|
T Consensus 126 ~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~~~~g--~KLSKR~~~~~l 172 (239)
T cd00808 126 EEHLSSTPKQILLYEALGWEPPKFAHLPLILNPDG--KKLSKRKGDTSI 172 (239)
T ss_pred hhhhhChHHHHHHHHHcCCCCCceEeeccccCCCC--CcccCCCCCccH
Confidence 99999999999999999999998878888888776 899999887444
No 29
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.05 E-value=5.8e-09 Score=110.11 Aligned_cols=207 Identities=18% Similarity=0.241 Sum_probs=116.6
Q ss_pred HHHHHHHHhCCceEEEEecCCCCCCcchhchHHHh----hHHHHHhhCCCeE-EEEccCcccccccC---CCH-HH----
Q 015582 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPL-VIQLTDDEKCMWKN---LSV-EE---- 140 (404)
Q Consensus 74 ~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v-~I~I~D~~a~~~~~---~~~-e~---- 140 (404)
++|++...++.++.+-||+.||| .+||||+-.++ +.++|+.. |.++ +|..+|++.-+++. ++. +.
T Consensus 13 ~~~~~r~~~~~~~~~~~g~~psG-~~HiG~~~e~~~~d~v~r~lr~~-G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~ 90 (510)
T PRK00750 13 EKIIKRLGKKPPVVVETGIGPSG-LPHIGNFREVARTDMVRRALRDL-GIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEY 90 (510)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCC-CcccccccchhhHHHHHHHHHHc-CCcEEEEEEEecCCcccccCCCCCchHHHHHh
Confidence 44555444444589999999998 89999976543 44556665 5555 45578998654331 221 11
Q ss_pred --------------HHHHHHHHH----HHHHHcCCCCCceEEEeCCccCccchHHHHHH--HHhhcCHHHHHHhh-CCC-
Q 015582 141 --------------SQRLARENA----KDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF-GFT- 198 (404)
Q Consensus 141 --------------i~~~~~~~~----~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~--l~~~~t~~~~~~~~-g~~- 198 (404)
-.+++..+. +.+-.+|++.+ ++.+++...+..|...++ |.++=.+.++...+ |..
T Consensus 91 ~G~pl~~~p~p~G~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~ 167 (510)
T PRK00750 91 LGKPLTEIPDPFGCHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIMEILLPYLGEER 167 (510)
T ss_pred cCcccccCCCCCCCchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCcc
Confidence 134443333 34446899754 666666554333333222 33333344443322 210
Q ss_pred -----------------CC-------cccccccccc----------ccchhhhhcC--CCCCCCC-ccccCCCCcccccc
Q 015582 199 -----------------GE-------DHIGKVSFPP----------VQEMIYKAVP--SFPSSFP-HLFSGKDHLRCLIP 241 (404)
Q Consensus 199 -----------------~~-------~~~g~~~Ypl----------lQ~~~~~aa~--~~~~~~~-Di~~~~~~~~~~vp 241 (404)
.. ..-|.+.|-+ .. +.- .+..++| -...++. .+.|
T Consensus 168 ~~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~-----g~~KL~Wr~dW~~rW~~l~V---d~e~ 239 (510)
T PRK00750 168 QATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTG-----GHGKLQWKVDWPMRWAALGV---DFEP 239 (510)
T ss_pred CCCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCC-----CCcccCCCCCcHHHHHHcCC---CEEe
Confidence 00 0112233311 11 000 0000000 0111233 3679
Q ss_pred cccCchh-HHHHHHHHHh-HhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 242 CAIDQDP-YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 242 ~G~DQd~-~~~l~rdla~-r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
.|.||.. ...+++.+++ .+|.+.|..+...++..-+| +|||||.+| .|.+.|
T Consensus 240 ~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G--~KMSKSkGN-~i~~~d 293 (510)
T PRK00750 240 FGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKG--EKISKSKGN-VITIED 293 (510)
T ss_pred eCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCC--CcccccCCC-ccCHHH
Confidence 9999999 9999999999 89998898877777776654 899999987 888766
No 30
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.89 E-value=3.1e-08 Score=99.77 Aligned_cols=211 Identities=19% Similarity=0.298 Sum_probs=112.3
Q ss_pred HHHHHHHHhCCceEEEEecCCCCCCcchhchHHHh----hHHHHHhhCCCeE-EEEccCccccccc-------------C
Q 015582 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPL-VIQLTDDEKCMWK-------------N 135 (404)
Q Consensus 74 ~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v-~I~I~D~~a~~~~-------------~ 135 (404)
++|++....+.++.+-||+-||| .+||||+...+ +.+++... |.++ +|..+|.+.-+++ .
T Consensus 9 ~~~~~~~~~~~~~~v~tgi~psG-~~HIG~~~e~i~~D~i~R~lr~~-G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G 86 (353)
T cd00674 9 EKIIEERKGKEKYVVASGISPSG-HIHIGNFREVITADLVARALRDL-GFEVRLIYSWDDYDRLRKVPPNVPESYEQYIG 86 (353)
T ss_pred HHHHHhccCCCeEEEecCCCCCC-CcccCccHHHHHHHHHHHHHHHc-CCCEEEEEEEcCCCcccccccchhhHHHHhcC
Confidence 34444333345788999999998 89999977543 33445554 5555 4557888843222 1
Q ss_pred CC-----------HHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCccchHHH-HHH-HHhhcCHHHHHHhh-CCC--C
Q 015582 136 LS-----------VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN-MVK-VAKCVTYNKVVGIF-GFT--G 199 (404)
Q Consensus 136 ~~-----------~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~-~~~-l~~~~t~~~~~~~~-g~~--~ 199 (404)
.+ .+-+.++.......+-.+|++.+ ++++++...+-.|.. +.. |.+.-.+.++...+ |.. +
T Consensus 87 ~pi~~ip~p~g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~ 163 (353)
T cd00674 87 MPLSSVPDPFGCCESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQE 163 (353)
T ss_pred ccchhchhhcCCCHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCC
Confidence 11 22233333444455557899764 566655544323332 222 44444444444322 110 0
Q ss_pred --------Cccc--------------cccccccccchhhhhcCC--------CCCCCC-ccccCCCCcccccccccCchh
Q 015582 200 --------EDHI--------------GKVSFPPVQEMIYKAVPS--------FPSSFP-HLFSGKDHLRCLIPCAIDQDP 248 (404)
Q Consensus 200 --------~~~~--------------g~~~YpllQ~~~~~aa~~--------~~~~~~-Di~~~~~~~~~~vp~G~DQd~ 248 (404)
..+. +.+.|-+=-+--- -++. +...+| ....++. ..-|.|.||..
T Consensus 164 ~~~P~~p~c~~cg~~~~~v~~~d~~~~~v~y~c~cG~~g-~~~~~~g~~KL~Wr~dW~~rW~~l~V---d~E~~GkDh~~ 239 (353)
T cd00674 164 TWYPFMPYCEKCGKDTTTVEAYDAKAGTVTYKCECGHEE-TVDIRTGRGKLTWRVDWPMRWAILGV---DFEPFGKDHAS 239 (353)
T ss_pred CceeeeeecCCcCcceeEEEEEeCCCCeEEEEcCCCCEE-EEeecCCCcccCCCCCchhhhhhcCC---CEEeeCccccc
Confidence 0011 2233321000000 0000 000011 1112232 25689999988
Q ss_pred H---HHHHHHHHh-HhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 249 Y---FRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 249 ~---~~l~rdla~-r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+ +...+.+++ .+|.+.|..+...++- +.| +.|||||.+| .|.+.|
T Consensus 240 ~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~-l~g-g~KMSKSkGn-vI~~~d 288 (353)
T cd00674 240 AGGSYDTGKEIAREIFGGEPPVPVMYEFIG-LKG-GGKMSSSKGN-VITPSD 288 (353)
T ss_pred cccHHHHHHHHHHHHhCCCCCeEEEeeeEE-eCC-CCccCCCCCC-cCCHHH
Confidence 8 999999999 8998888766555553 554 3699999987 888766
No 31
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.77 E-value=5.5e-08 Score=92.45 Aligned_cols=152 Identities=14% Similarity=0.200 Sum_probs=100.5
Q ss_pred CCCCCCcchhchHHHhhHHHH-HhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC
Q 015582 93 GPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (404)
.||| .|||||+..++ ..|+ .+..|..+++-|=|.-. ..+. ......+..++..+|++.+.- ++.||+-.
T Consensus 9 sPtG-~lHlG~~r~al-~n~l~Ar~~~G~~iLRieDtD~----~R~~---~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~ 78 (230)
T cd00418 9 SPTG-YLHIGHARTAL-FNFAFARKYGGKFILRIEDTDP----ERSR---PEYVESILEDLKWLGLDWDEG-PYRQSDRF 78 (230)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCeEEEEeCcCCC----CCCC---hHHHHHHHHHHHHcCCCCCCC-eeehhcCH
Confidence 4777 89999999995 6774 45567777777766332 1121 233345667777889998754 56677654
Q ss_pred ccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHH
Q 015582 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFR 251 (404)
Q Consensus 172 ~~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~ 251 (404)
..|+..+-++.+. | .||..| -|.+.. |.+. +- +.|..|.|+...-.
T Consensus 79 -~~y~~~~~~L~~~----------g----------g~p~Y~-----la~vvD----D~~~-gI---ThViRG~D~l~st~ 124 (230)
T cd00418 79 -DLYRAYAEELIKK----------G----------GYPLYN-----FVHPVD----DALM-GI---THVLRGEDHLDNTP 124 (230)
T ss_pred -HHHHHHHHHHHHc----------C----------CCcccc-----cccccc----cccc-CC---CEEEECHhhhhchH
Confidence 2333322222211 1 455555 332222 5443 22 46889999888888
Q ss_pred HHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCC
Q 015582 252 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 290 (404)
Q Consensus 252 l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~ns 290 (404)
.-+.+++.+|.++|...|.+++...+| +||||+.++.
T Consensus 125 ~q~~l~~~Lg~~~P~~~H~pll~~~~g--~KLSKr~~~~ 161 (230)
T cd00418 125 IQDWLYEALGWEPPRFYHFPRLLLEDG--TKLSKRKLNT 161 (230)
T ss_pred HHHHHHHHcCCCCCeEEEeeeeeCCCC--CCccCcCCCc
Confidence 889999999999999999999988876 8999998763
No 32
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.36 E-value=4.4e-06 Score=88.30 Aligned_cols=203 Identities=16% Similarity=0.217 Sum_probs=102.1
Q ss_pred CceEEEEecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEEccCccccccc---CCC-----------------HH
Q 015582 84 EKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDEKCMWK---NLS-----------------VE 139 (404)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~I~D~~a~~~~---~~~-----------------~e 139 (404)
+++.+=||+.||| .+||||+..++ +.+++...+.-..+|..+|++--+++ .++ ..
T Consensus 18 ~~~~~~tg~~psG-~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g 96 (515)
T TIGR00467 18 NLYTVASGITPSG-HIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEG 96 (515)
T ss_pred CeEEEecCCCCCC-CccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCC
Confidence 4799999999998 89999977653 34456665433345567888832222 011 11
Q ss_pred HHHHHHHHH----HHHHHHcCCCCCceEEEeCCccCccchHHHHHH--HHhhcCHHHHHHhh-CCC--C--------Ccc
Q 015582 140 ESQRLAREN----AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF-GFT--G--------EDH 202 (404)
Q Consensus 140 ~i~~~~~~~----~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~--l~~~~t~~~~~~~~-g~~--~--------~~~ 202 (404)
...+++..+ ...+-.+|++ ..++++++....-.|...++ |.+.-.+.++...+ |.. + ..+
T Consensus 97 ~~~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~~~~~~~~P~~pic~~ 173 (515)
T TIGR00467 97 CKTSYAEHFLIPFLESLPVLGIN---PEFIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTSKLEENWYPISVFCEN 173 (515)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCe---EEEEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCCccCCCceeeeeecCC
Confidence 123334333 3344458985 46778777664434444333 34433444443322 210 0 113
Q ss_pred ccccccccccchhhh---hcC--CCCCCCCccc-----------------cCCCCcccccccccCchhHH---HHHHHHH
Q 015582 203 IGKVSFPPVQEMIYK---AVP--SFPSSFPHLF-----------------SGKDHLRCLIPCAIDQDPYF---RMTRDVA 257 (404)
Q Consensus 203 ~g~~~YpllQ~~~~~---aa~--~~~~~~~Di~-----------------~~~~~~~~~vp~G~DQd~~~---~l~rdla 257 (404)
.|.+..|+.- .-.. -|. |=+.--.|+. .++. ..-|.|.|+..-. ....++|
T Consensus 174 cGrv~~~~~~-~~~~~~v~Y~c~cG~~g~~~~~~g~~KL~WkvdW~~RW~~lgV---~~Ep~GkDH~~~ggsy~~~~~ia 249 (515)
T TIGR00467 174 CGRDTTTVNN-YDNEYSIEYSCECGNQESVDIYTGAIKLPWRVDWPARWKIEKV---TFEPAGKDHAAAGGSYDTGVNIA 249 (515)
T ss_pred cCccCceEEE-ecCCceEEEEcCCCCEEEEeecCCCcccCCCCCcHhhHhhhCc---ccccCCCCccCccCCchhHHHHH
Confidence 3444333332 0000 000 0000000111 1122 2457788875533 4445666
Q ss_pred h-HhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 258 P-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 258 ~-r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+ -+|...|..+..-++- |.|.|.|||||.+| .|.+.|
T Consensus 250 ~~~l~~~~P~~~~ye~v~-L~~~g~KMSKS~Gn-~itl~d 287 (515)
T TIGR00467 250 KEIFQYSPPVTVQYEWIS-LKGKGGKMSSSKGD-VISVKD 287 (515)
T ss_pred HHHhCCCCCcCcEEEEEE-EcCCCccccCCCCC-CccHHH
Confidence 5 4766666543322222 55666899999998 777654
No 33
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.78 E-value=0.0002 Score=68.67 Aligned_cols=165 Identities=16% Similarity=0.180 Sum_probs=97.1
Q ss_pred EecCCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCC
Q 015582 90 TGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 168 (404)
Q Consensus 90 tG~~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s 168 (404)
.|-.||| .|||||+..++ ..| +.+..+..+++=|.|...-. ....++.. ..+.+++..+|++++ .++.||
T Consensus 6 faPsPtG-~lHiG~~rtal-~~~l~Ar~~~G~~ilRieDtD~~r--~~~~~~~~---~~i~~dL~wLGl~~d--~~~~qS 76 (240)
T cd09287 6 FAPNPNG-PLHLGHARAAI-LNGEYAKMYGGKFILRFDDTDPRT--KRPDPEAY---DMIPEDLEWLGVKWD--EVVIAS 76 (240)
T ss_pred CCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEeeCcCCCCc--ccchHHHH---HHHHHHHHHcCCCCC--Cccchh
Confidence 4556887 89999999995 566 55667888888888854211 00222222 246677788999987 467788
Q ss_pred ccCccchHHHHHHH-HhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCch
Q 015582 169 DYVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQD 247 (404)
Q Consensus 169 ~~~~~~~~~~~~~l-~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd 247 (404)
+.. ..|+.-+-++ .+-..+. .... .+. .+.||..| -|.+.. |.+..= +.|..|.|..
T Consensus 77 ~r~-~~y~~~~~~Li~~G~aY~--~~~~---~~~---~~i~ptY~-----la~vVD----D~~~gI----ThViRg~d~~ 134 (240)
T cd09287 77 DRI-ELYYEYARKLIEMGGAYV--HPRT---GSK---YRVWPTLN-----FAVAVD----DHLLGV----THVLRGKDHI 134 (240)
T ss_pred ccH-HHHHHHHHHHHHcCCccc--Cccc---CCc---EEEEEccc-----cceeee----ccccCC----CeEEechhhh
Confidence 764 2232222222 1111111 0111 111 13356666 332222 443221 3577898866
Q ss_pred hHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCC
Q 015582 248 PYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 288 (404)
Q Consensus 248 ~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~ 288 (404)
..-..-+-+.+.+|.+.|...|.+++. .. |+||||...
T Consensus 135 ~~t~~q~~l~~~Lg~~~P~~~H~pll~-~~--~~kLSKR~~ 172 (240)
T cd09287 135 DNTEKQRYIYEYFGWEYPETIHWGRLK-IE--GGKLSTSKI 172 (240)
T ss_pred hCCHHHHHHHHHcCCCCCcEEeeeeec-CC--CCeeccccc
Confidence 655555778888999889888877764 23 589999964
No 34
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.76 E-value=8.2e-05 Score=74.98 Aligned_cols=202 Identities=18% Similarity=0.271 Sum_probs=81.1
Q ss_pred CCceEEEEecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEEccCccccccc----------------CC-----C
Q 015582 83 GEKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDEKCMWK----------------NL-----S 137 (404)
Q Consensus 83 ~~~~~iytG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~I~D~~a~~~~----------------~~-----~ 137 (404)
+.+..+-||+.||| .+||||+--++ ..+-|++.+.---+|..+|+.--+++ ++ +
T Consensus 22 ~~~~v~~sG~sPSG-~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP 100 (360)
T PF01921_consen 22 KEPYVFASGISPSG-LPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDP 100 (360)
T ss_dssp -SEEEEEEEE--SS----HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-T
T ss_pred CccEEEecCCCCCC-CcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCC
Confidence 46899999999998 89999976543 34447776443334556665432222 11 1
Q ss_pred HHHHHHHHHHHHHH----HHHcCCCCCceEEEeCCccCccchHHHHHH--HHhhcCHHHHHHhh----------------
Q 015582 138 VEESQRLARENAKD----IIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF---------------- 195 (404)
Q Consensus 138 ~e~i~~~~~~~~~~----ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~--l~~~~t~~~~~~~~---------------- 195 (404)
......++..+.+. +-.+|+++ .++++++....-.|...++ |.+.-.+.++...+
T Consensus 101 ~G~~~SyaeH~~~~~~~~L~~~gie~---e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~~~~~y~Pf~piC 177 (360)
T PF01921_consen 101 FGCHESYAEHFNAPFEEFLDEFGIEY---EFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRERPETYSPFLPIC 177 (360)
T ss_dssp TSSSSCHHHHHHHHHHHHHHTTT------EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT--TT--SEEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHHcCCce---EEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcCCCCCeeeeeeec
Confidence 11123344433333 33579865 6777777665434444332 44444444443322
Q ss_pred ---CCCCC-----c--cccccccccccchhhhhcCCCCCCCCccc-----------------cCCCCcccccccccCchh
Q 015582 196 ---GFTGE-----D--HIGKVSFPPVQEMIYKAVPSFPSSFPHLF-----------------SGKDHLRCLIPCAIDQDP 248 (404)
Q Consensus 196 ---g~~~~-----~--~~g~~~YpllQ~~~~~aa~~~~~~~~Di~-----------------~~~~~~~~~vp~G~DQd~ 248 (404)
|.-.. . .-+.+.|-+-. +- +.--.++. .++. +.-|.|.|+-.
T Consensus 178 ~~cGri~tt~v~~~d~~~~~v~Y~c~~-----cG---~~g~~~i~~g~gKL~WkvDW~mRW~~lgV---dfEp~GKDH~~ 246 (360)
T PF01921_consen 178 EKCGRIDTTEVTEYDPEGGTVTYRCEE-----CG---HEGEVDITGGNGKLQWKVDWPMRWAALGV---DFEPFGKDHAS 246 (360)
T ss_dssp TTTEE--EEEEEEE--SSSEEEEE--T-----TS------EEETTTT-EEE-HHHHHHHHHHHTT----SEEEEEHHHHC
T ss_pred cccCCcccceeeEeecCCCEEEEEecC-----CC---CEEEEecCCCcccccCCCcChhhhhhcCc---eeccCCCccCC
Confidence 11000 0 12344444300 00 00000111 1222 24678888777
Q ss_pred ---HHHHHHHHHhH-hCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecC-----CHHHHH
Q 015582 249 ---YFRMTRDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK 302 (404)
Q Consensus 249 ---~~~l~rdla~r-~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D-----~~~~i~ 302 (404)
-...+.+||++ +|.+.|..+.--++ ++.| ++|||||.+| .|-+.| +|+.++
T Consensus 247 ~GGS~d~~~~I~~~i~g~~pP~~~~YE~~-~~~g-~~kmSsSkG~-~~t~~e~L~~~~PE~lr 306 (360)
T PF01921_consen 247 PGGSYDTSKRIAREILGYEPPVPFPYEFF-LDKG-GGKMSSSKGN-GITPEEWLEYAPPESLR 306 (360)
T ss_dssp TTSHHHHHHHHHHHCC-----EEEEE--E-EES----------------HHHHHTTS-HHHHH
T ss_pred CCCChhhHHHHHHHHhCCCCCCCCCeeEE-EeCC-CcccccCCCC-ccCHHHHHHhcCHHHHH
Confidence 78888999955 78877866543232 3444 3699999998 776655 555554
No 35
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.67 E-value=0.0022 Score=67.41 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=48.3
Q ss_pred ccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecC------CHHHHHHHh
Q 015582 239 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKI 305 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~~~~i~~KI 305 (404)
.|..|.||..+...-+-+.+.+|.+.|...|.+++..++| +||||..+ ++.|.+ .|+.+.+-+
T Consensus 200 hvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g--~kLSKR~g--~~~l~~l~~~g~~p~a~~~~~ 268 (470)
T TIGR00464 200 HVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG--KKLSKRDG--ATSIMQFKEQGYLPEALINYL 268 (470)
T ss_pred EEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC--ccccccCC--CccHHHHHHCCCCHHHHHHHH
Confidence 3449999999888888899999998888888888778876 89999966 555543 455555444
No 36
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00099 Score=69.51 Aligned_cols=94 Identities=22% Similarity=0.346 Sum_probs=58.0
Q ss_pred CceEEEEecCCCCCCcchhchHHH----hhHHHHHhhCCCeEEEEccCccccccc---CCC-HHHH--------------
Q 015582 84 EKFYLYTGRGPSSEALHLGHLVPF----MFTKYLQDAFKVPLVIQLTDDEKCMWK---NLS-VEES-------------- 141 (404)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~v~~----~~~~~lQ~~~~~~v~I~I~D~~a~~~~---~~~-~e~i-------------- 141 (404)
....+=||+.||| .+||||+-=+ +..+-|.+.++---+|.++|+..-+++ +++ .+..
T Consensus 19 ~~~~v~tGisPSG-~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGISPSG-LIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecCcCCCC-CcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 5688999999998 8999996533 233447776553335668888765543 233 1222
Q ss_pred ----HHHHHHHHHHHH----HcCCCCCceEEEeCCccCccchHHHHHH
Q 015582 142 ----QRLARENAKDII----ACGFDVTKTFIFSDFDYVGGAFYKNMVK 181 (404)
Q Consensus 142 ----~~~~~~~~~~il----A~G~dp~kt~i~~~s~~~~~~~~~~~~~ 181 (404)
..++..+.+.+. -+|+++ .++++++..+.-.|...++
T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~Yk~G~~~~~i~ 142 (521)
T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATELYKSGLYDEAIR 142 (521)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCce---EEEEhHHhhhcccHHHHHH
Confidence 344444544444 368865 6777776665555555444
No 37
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.64 E-value=0.0029 Score=66.91 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=73.7
Q ss_pred cccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecC------CHHHHHHHhccccccCC
Q 015582 240 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINKYAFSGG 313 (404)
Q Consensus 240 vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~~~~i~~KI~kyA~t~~ 313 (404)
|..|.||..+.-.-+-+.+.+|...|...|.++|.+++| +||||..+..+| .+ .|+.|.+-+.....+.+
T Consensus 200 VIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g--~KLSKR~g~~~i--~~~r~~G~~Peai~n~la~LG~s~~ 275 (513)
T PRK14895 200 IIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG--AKLSKRHGALGI--EAYKDMGYLPESLCNYLLRLGWSHG 275 (513)
T ss_pred EEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCC--CccccccCchhH--HHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 448888888877778888999998898888899888886 899999765333 22 56666655533112211
Q ss_pred cchhHHHhhcCCCCcchhHHHHHHhhc----------CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 015582 314 QESVELHRKLGANLEVDIPVKYLSFFL----------EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 372 (404)
Q Consensus 314 ~~t~e~~~~~g~~pd~~v~~~~l~~f~----------~~~~eleei~~~~~~G~~~~~~lK~~La~~i~ 372 (404)
+.++...-++...|. -|.+++..+-..|-.. +...++...+...+.
T Consensus 276 ------------~~e~~~~~el~~~F~~~~v~~s~~~FD~~KL~wlN~~yi~~-l~~~el~~~~~~~l~ 331 (513)
T PRK14895 276 ------------DDEIISMTQAIDWFNLDSLGKSPSKLDFAKMNSLNAHYLRM-LDNDSLTSKTVEILE 331 (513)
T ss_pred ------------CcCCCCHHHHHhhCCHHhCcCCcCcCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Confidence 111222223333331 1678888888888753 666666665554443
No 38
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.50 E-value=0.00073 Score=64.69 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=88.6
Q ss_pred CCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC
Q 015582 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (404)
.||| .|||||+..++ ..| +.+..|..+++-|=|.-. .. ........+..++..+|++.+ .++.||+-.
T Consensus 9 sPtG-~lHlG~~~~al-~~~l~Ar~~~G~~iLRieDtD~----~R---~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~ 77 (238)
T cd00807 9 EPNG-YLHIGHAKAIL-LNFGYAKKYGGRCNLRFDDTNP----EK---EEEEYVDSIKEDVKWLGIKPY--KVTYASDYF 77 (238)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEecCCCC----cc---cchHHHHHHHHHHHHcCCCCC--CceecccCH
Confidence 4777 89999999995 666 445567777776655321 11 122333355677778999998 467788754
Q ss_pred ccchHHHHH-HHH-hhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhH
Q 015582 172 GGAFYKNMV-KVA-KCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPY 249 (404)
Q Consensus 172 ~~~~~~~~~-~l~-~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~ 249 (404)
..|..++ ++- +-..+-. .+ .+. ....||..| -|.... |.+..= +.|..|.|....
T Consensus 78 --~~Y~~~~~~L~~~g~aY~~--~~----~~~--~~~i~ptY~-----lA~vVD----D~~~gI----ThVvRG~D~l~~ 134 (238)
T cd00807 78 --DQLYEYAEQLIKKGKAYVH--HR----TGD--KWCIYPTYD-----FAHPIV----DSIEGI----THSLCTLEFEDR 134 (238)
T ss_pred --HHHHHHHHHHHHcCCeecC--CC----CCC--CEEEEeccc-----cceEee----ccccCC----CeEEechhhhcC
Confidence 2333322 221 1111110 00 011 112367777 332222 544322 356778885554
Q ss_pred HHHHHHHHhHhCCCCccee-ecccccCCCCCCCCCCCCCCC
Q 015582 250 FRMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPN 289 (404)
Q Consensus 250 ~~l~rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSkS~~n 289 (404)
-..-.-+.+.+|.+.|..+ ++. + ..+ |.|+||....
T Consensus 135 t~~Q~~l~~aLg~~~P~~~~~~h-l-n~~--g~kLSKR~~~ 171 (238)
T cd00807 135 RPSYYWLCDALRLYRPHQWEFSR-L-NLT--YTVMSKRKLL 171 (238)
T ss_pred CHHHHHHHHHcCCCCCceeEEEE-E-CCC--CCCccCcCch
Confidence 4344667788999888644 232 2 455 4899999753
No 39
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.37 E-value=0.00056 Score=72.57 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=42.9
Q ss_pred cccccccCchhHHHHHHHHHhHhCCCCcc--eeecccccC-CCCCCCCCCCCCCCCeeeecCCHHH
Q 015582 238 CLIPCAIDQDPYFRMTRDVAPRIGYHKPA--LIESSFFPA-LQGETGKMSASDPNSAIYVTDSAKA 300 (404)
Q Consensus 238 ~~vp~G~DQd~~~~l~rdla~r~~~~kp~--~l~~~~lp~-L~G~~~KMSkS~~nsaI~L~D~~~~ 300 (404)
++-.+|.||..|+.-...+++.+|..++. .+.+..+-. +.+.|+|||||.+| .|++.|=-++
T Consensus 275 ~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn-~i~l~dll~~ 339 (507)
T PRK01611 275 VIYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGN-VVTLDDLLDE 339 (507)
T ss_pred EEEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCc-eeEHHHHHHH
Confidence 34478999999999999999999976332 122222111 22235899999998 9998874444
No 40
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.34 E-value=0.0024 Score=63.28 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=46.2
Q ss_pred CCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC
Q 015582 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (404)
.||| .|||||+..++ .+| +.++.|..+++-|-|.-. .. ........+..++..+|++.+.. ++.||+-.
T Consensus 13 SPTG-~LHlG~~rtAL-~n~l~Ar~~~G~~iLRiEDtD~----~R---~~~~~~~~I~~dL~wlGl~wDe~-~~~QS~r~ 82 (299)
T PRK05710 13 SPSG-PLHFGSLVAAL-GSWLDARAHGGRWLLRIEDIDP----PR---EVPGAADAILADLEWLGLHWDGP-VLYQSQRH 82 (299)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCC----Cc---cchHHHHHHHHHHHHCCCCCCCC-ceEeeccH
Confidence 3667 89999999995 677 445567788887776422 11 12233446678888899999854 45577654
No 41
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.32 E-value=0.0038 Score=66.77 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=53.8
Q ss_pred CceEEEEecCCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015582 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (404)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt 162 (404)
..+....+=.||| .|||||+..++ ++| +.+.+|..+++-|-|.-..+. .. .......+..++..+|++++.
T Consensus 100 g~V~tRFaPsPtG-~LHIGharaal-ln~~~Ar~~~G~~iLRidDTDpk~~--R~---~~e~~~~I~edL~wLGl~wD~- 171 (567)
T PRK04156 100 GKVVMRFAPNPSG-PLHLGHARAAI-LNDEYAKMYGGKFILRFEDTDPRTK--RP---DPEAYDMILEDLKWLGVKWDE- 171 (567)
T ss_pred CeEEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEeEccCCCCcc--cc---hHHHHHHHHHHHHHcCCCCCC-
Confidence 3467777778888 89999999995 666 556678888887877533111 11 222234556777788999874
Q ss_pred EEEeCCccC
Q 015582 163 FIFSDFDYV 171 (404)
Q Consensus 163 ~i~~~s~~~ 171 (404)
++.||+..
T Consensus 172 -~~~qSdr~ 179 (567)
T PRK04156 172 -VVIQSDRL 179 (567)
T ss_pred -ccCcccCH
Confidence 67788776
No 42
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.14 E-value=0.011 Score=62.26 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=47.3
Q ss_pred ccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecC------CHHHHHHHh
Q 015582 239 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKI 305 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~~~~i~~KI 305 (404)
.|..|.||..+.-.-+.+.+.+|...|...|.+++..++| +||||-.+ ++.+.+ .|+.+.+-+
T Consensus 210 hvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g--~klSKR~g--~~~l~~l~~~G~~p~Ai~n~l 278 (476)
T PRK01406 210 HVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDG--KKLSKRHG--ATSVEQYRDMGYLPEALLNYL 278 (476)
T ss_pred EEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccCcCC--ccCHHHHHHCCCCHHHHHHHH
Confidence 3458999888887778899999998888888888777776 89999966 555543 455554433
No 43
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.12 E-value=0.004 Score=58.79 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=44.5
Q ss_pred CCceEEEEecCCCCCCcchhchHHHh---hHHHHHhhCCCeEEEEc-cCcccc--c---cc-CCCHHH-HHHHHHHHHHH
Q 015582 83 GEKFYLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEKC--M---WK-NLSVEE-SQRLARENAKD 151 (404)
Q Consensus 83 ~~~~~iytG~~PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I-~D~~a~--~---~~-~~~~e~-i~~~~~~~~~~ 151 (404)
++.-...||-=|-+ .+||||+-+++ .+.++++..|..|.... .|++.. . .+ ..++.+ ++.+.....++
T Consensus 19 ~~~~~y~~gpt~y~-~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~ 97 (213)
T cd00672 19 GLVTMYVCGPTVYD-YAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFED 97 (213)
T ss_pred CCceEEEeCCccCC-CcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44445567777786 89999976653 33333344566665542 222321 1 11 355555 45555666777
Q ss_pred HHHcCCCC
Q 015582 152 IIACGFDV 159 (404)
Q Consensus 152 ilA~G~dp 159 (404)
+.++|+.+
T Consensus 98 ~~~l~i~~ 105 (213)
T cd00672 98 MKALNVLP 105 (213)
T ss_pred HHHcCCCC
Confidence 88899976
No 44
>PLN02627 glutamyl-tRNA synthetase
Probab=96.99 E-value=0.049 Score=57.98 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=46.6
Q ss_pred EEEec--CCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce--
Q 015582 88 LYTGR--GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-- 162 (404)
Q Consensus 88 iytG~--~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt-- 162 (404)
+-+=| -||| .|||||+-.++ .+| +.+..|..+++-|=|.-. ..+.+ .....+..++.-+|++.+..
T Consensus 46 vr~RFAPSPTG-~LHiG~aRtAL-~n~l~Ar~~gG~fiLRIEDTD~----~R~~~---e~~~~I~~~L~WLGl~wDegp~ 116 (535)
T PLN02627 46 VRVRFAPSPTG-NLHVGGARTAL-FNYLFARSKGGKFVLRIEDTDL----ARSTK---ESEEAVLRDLKWLGLDWDEGPD 116 (535)
T ss_pred eEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHhCCEEEEEeCcCCC----CCCCh---HHHHHHHHHHHHcCCCCCcCcc
Confidence 44444 4567 89999999995 677 455667788877766322 11222 22224556666789998753
Q ss_pred -----EEEeCCccC
Q 015582 163 -----FIFSDFDYV 171 (404)
Q Consensus 163 -----~i~~~s~~~ 171 (404)
-.|.||+-.
T Consensus 117 ~gg~~gpy~QSeR~ 130 (535)
T PLN02627 117 VGGEYGPYRQSERN 130 (535)
T ss_pred cCCCCCCeeeeccH
Confidence 247787754
No 45
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=96.93 E-value=0.0098 Score=58.21 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=45.1
Q ss_pred CCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC
Q 015582 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (404)
.||| .|||||+..++ .+| +.+..|..+++-|=|.-. ..+.+ .....+..++.-+|++.+.. ++.||+..
T Consensus 8 SPtG-~lHiG~~rtAL-~n~l~Ar~~gG~~iLRiEDtD~----~R~~~---~~~~~I~~dL~wLGl~wDe~-~~~QS~r~ 77 (272)
T TIGR03838 8 SPSG-PLHFGSLVAAL-GSYLDARAHGGRWLVRIEDLDP----PREVP---GAADDILRTLEAYGLHWDGE-VVYQSQRH 77 (272)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEeCcCCC----CCCCh---HHHHHHHHHHHHcCCCCCCC-eeeeeCCH
Confidence 4777 89999999995 666 455567788887766332 11211 22234556666789998754 45787765
No 46
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=96.91 E-value=0.0085 Score=63.50 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=46.9
Q ss_pred EEEecC--CCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015582 88 LYTGRG--PSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (404)
Q Consensus 88 iytG~~--PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (404)
+.|=|. ||| .|||||+-.++ ++| +.+.+|..+++-|=|.-. .. ....+...+..++.-+|++++. +
T Consensus 12 v~tRFAPsPtG-~LHiGharaAl-ln~l~Ar~~gG~~iLRiEDTDp----~R---~~~e~~~~I~~dL~WLGl~wD~--~ 80 (523)
T PLN03233 12 IVTRFPPEPSG-YLHIGHAKAAL-LNDYYARRYKGRLILRFDDTNP----SK---EKAEFEESIIEDLGKIEIKPDS--V 80 (523)
T ss_pred EEEeeCCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEECCCCC----Cc---cchHHHHHHHHHHHHhCCCCCC--C
Confidence 445554 556 89999999995 677 455567777776644221 11 1223334566677778999874 5
Q ss_pred EeCCccC
Q 015582 165 FSDFDYV 171 (404)
Q Consensus 165 ~~~s~~~ 171 (404)
+.||+..
T Consensus 81 ~~qSdr~ 87 (523)
T PLN03233 81 SFTSDYF 87 (523)
T ss_pred ccccccH
Confidence 7788876
No 47
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=96.88 E-value=0.046 Score=56.88 Aligned_cols=68 Identities=18% Similarity=0.342 Sum_probs=45.2
Q ss_pred CCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC
Q 015582 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (404)
-||| .|||||+..++ .+| +.+..|..+++-|=|.-. ..+.+ .....+..++.-+|++.+. .|.||+-.
T Consensus 7 SPTG-~LHiG~artAL-~n~l~Ar~~gG~fiLRiEDTD~----~R~~~---e~~~~I~~~L~WlGl~wDe--~y~QSeR~ 75 (433)
T PRK12410 7 SPTG-DMHIGNLRAAI-FNYIVAKQQNEDFLIRIEDTDK----ERNIE---GKDKEILEILNLFGISWDK--LVYQSENL 75 (433)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCEEEEEeCcCCC----CcCCh---HHHHHHHHHHHHcCCCCCC--CeehhccH
Confidence 4787 89999999995 677 456678888887766322 11222 2222455666678999985 57888765
No 48
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=96.80 E-value=0.017 Score=62.14 Aligned_cols=74 Identities=23% Similarity=0.301 Sum_probs=47.8
Q ss_pred EEEecC--CCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015582 88 LYTGRG--PSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (404)
Q Consensus 88 iytG~~--PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (404)
+.|=|. ||| .|||||+..++ ++| +.+.+|..+++-|=|.-. .. +...+...+..++..+|++.+.- +
T Consensus 53 v~tRFAPsPtG-yLHIGharaAl-lN~l~Ar~~gG~~iLRiEDTDp----~R---~~~e~~d~IleDL~WLGl~wDe~-~ 122 (601)
T PTZ00402 53 VVTRFPPEASG-FLHIGHAKAAL-INSMLADKYKGKLVFRFDDTNP----SK---EKEHFEQAILDDLATLGVSWDVG-P 122 (601)
T ss_pred eEEeeCCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEEcCCCC----cc---cCHHHHHHHHHHHHHCCCCCCCc-e
Confidence 445554 567 89999999995 677 556667777776654211 11 22334446667788899998743 4
Q ss_pred EeCCccC
Q 015582 165 FSDFDYV 171 (404)
Q Consensus 165 ~~~s~~~ 171 (404)
+.||+..
T Consensus 123 ~~QSdr~ 129 (601)
T PTZ00402 123 TYSSDYM 129 (601)
T ss_pred eeccccH
Confidence 5677775
No 49
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=96.63 E-value=0.008 Score=56.45 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=33.9
Q ss_pred ccccCchhHHHHHHHHHhHhCCC-Ccceee--cccccCCCCCCCCCCCCCC
Q 015582 241 PCAIDQDPYFRMTRDVAPRIGYH-KPALIE--SSFFPALQGETGKMSASDP 288 (404)
Q Consensus 241 p~G~DQd~~~~l~rdla~r~~~~-kp~~l~--~~~lp~L~G~~~KMSkS~~ 288 (404)
.+|.||..|+.-.+.+++.+|.. +|...+ ..++.+-+ |+||||..+
T Consensus 164 v~g~~~~~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~--~~kmS~R~G 212 (212)
T cd00671 164 VVGADHHGHFKRLFAALELLGYDEAKKLEHLLYGMVNLPK--EGKMSTRAG 212 (212)
T ss_pred EECCCHHHHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCC--CCCCCCCCC
Confidence 78999999999999999999975 333222 35565433 489999753
No 50
>PLN02907 glutamate-tRNA ligase
Probab=96.61 E-value=0.026 Score=62.36 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=47.2
Q ss_pred EEEecC--CCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015582 88 LYTGRG--PSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (404)
Q Consensus 88 iytG~~--PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (404)
+.|=|. ||| .|||||.-.++ ++| +.+.+|..+++-|=|.-. ..+. ..+...+..++.-+|+++++ +
T Consensus 214 v~tRFaPsPtG-~LHiG~ar~al-~n~~~Ar~~~G~~iLR~eDTdp----~r~~---~e~~~~I~~dl~wLG~~~d~--~ 282 (722)
T PLN02907 214 VCTRFPPEPSG-YLHIGHAKAAL-LNQYFARRYKGKLIVRFDDTNP----SKES---DEFVENILKDIETLGIKYDA--V 282 (722)
T ss_pred eEEeeCCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEecCCCC----CcCC---hHHHHHHHHHHHHcCCCCCC--c
Confidence 555555 456 89999999995 676 566677777776644221 1111 22333555667778999985 4
Q ss_pred EeCCccC
Q 015582 165 FSDFDYV 171 (404)
Q Consensus 165 ~~~s~~~ 171 (404)
+.||++.
T Consensus 283 ~~qS~r~ 289 (722)
T PLN02907 283 TYTSDYF 289 (722)
T ss_pred ccccccH
Confidence 6788876
No 51
>PLN02859 glutamine-tRNA ligase
Probab=96.60 E-value=0.071 Score=58.95 Aligned_cols=88 Identities=19% Similarity=0.264 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHh-CCceEEEEec--CCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHH
Q 015582 71 RDLNDILDAYEK-GEKFYLYTGR--GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAR 146 (404)
Q Consensus 71 ~d~~~ll~~~~~-~~~~~iytG~--~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~ 146 (404)
...+.+-+.++. +.+ +.|=| .||| .|||||+-.++ ++| +.+..|..+++-|=|.-- .. +...+..
T Consensus 249 ~~~~~~~~hl~~t~g~--V~tRFaPsPtG-~LHiGharaal-lN~~~Ar~~~G~~~LRieDTdp----~r---~~~e~~~ 317 (788)
T PLN02859 249 NTKEILEKHLKATGGK--VYTRFPPEPNG-YLHIGHAKAMF-VDFGLAKERGGCCYLRFDDTNP----EA---EKKEYID 317 (788)
T ss_pred CcHHHHHHHHhhcCCc--eEEEeCCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEecCCCC----Cc---cchHHHH
Confidence 334444444443 333 44555 4567 89999999985 666 555567777776544211 11 1223333
Q ss_pred HHHHHHHHcCCCCCceEEEeCCccC
Q 015582 147 ENAKDIIACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 147 ~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (404)
.+..++.-+|+++++ ++.||++.
T Consensus 318 ~I~edL~WLG~~~d~--~~~qSd~f 340 (788)
T PLN02859 318 HIEEIVEWMGWEPFK--ITYTSDYF 340 (788)
T ss_pred HHHHHHHHcCCCCCC--cccccHhH
Confidence 555666678999874 56788776
No 52
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.02 Score=60.11 Aligned_cols=74 Identities=16% Similarity=0.282 Sum_probs=47.5
Q ss_pred EEEecCC--CCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015582 88 LYTGRGP--SSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (404)
Q Consensus 88 iytG~~P--Tg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (404)
+.|=|.| || .|||||....+ .+| +.+++|..+++-|=|.-. ..+..+ ....+..++.-+|++++.. +
T Consensus 10 v~tRFAPsPtG-~LHiG~artAl-~N~~~Ar~~~G~fiLRiEDTD~----~R~~~e---~~~~I~~~L~WLGl~wde~-~ 79 (472)
T COG0008 10 VRTRFAPSPTG-YLHIGHARTAL-LNYLYARKYGGKFILRIEDTDP----ERETPE---AEDAILEDLEWLGLDWDEG-P 79 (472)
T ss_pred eEEEECcCCCC-ccchHHHHHHH-HHHHHHHHhCCEEEEEecCCCC----CCCCHH---HHHHHHHHHHhcCCCCCCc-e
Confidence 4555555 56 89999999994 677 455677777777655321 122222 2224455666789999866 6
Q ss_pred EeCCccC
Q 015582 165 FSDFDYV 171 (404)
Q Consensus 165 ~~~s~~~ 171 (404)
+.||+..
T Consensus 80 ~~QS~r~ 86 (472)
T COG0008 80 YYQSERF 86 (472)
T ss_pred eehhhhH
Confidence 7787765
No 53
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=96.40 E-value=0.043 Score=57.70 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=45.4
Q ss_pred ceEEE-EecCCCCCCcchhchHHHh---hHHHHHhhCCCeEEEE--ccCccc-ccc----cCCCHHHH-HHHHHHHHHHH
Q 015582 85 KFYLY-TGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDEK-CMW----KNLSVEES-QRLARENAKDI 152 (404)
Q Consensus 85 ~~~iy-tG~~PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~--I~D~~a-~~~----~~~~~e~i-~~~~~~~~~~i 152 (404)
.+.+| ||--|.+ .+||||..+.+ ++.++++..|..|..+ ++|..- ... ...++.++ ..+..+..+++
T Consensus 23 ~v~~yvcgPtvy~-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 23 KVKMYVCGPTVYD-YAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred cceEEEeCCccCC-CcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34555 8888987 89999977643 3333344457666655 444332 221 13555554 44556777788
Q ss_pred HHcCC-CCC
Q 015582 153 IACGF-DVT 160 (404)
Q Consensus 153 lA~G~-dp~ 160 (404)
.++|+ .|+
T Consensus 102 ~~Lgi~~~d 110 (463)
T PRK00260 102 DALNVLPPD 110 (463)
T ss_pred HHcCCCCCC
Confidence 88998 443
No 54
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.24 E-value=0.033 Score=58.00 Aligned_cols=72 Identities=28% Similarity=0.365 Sum_probs=44.1
Q ss_pred eEEEEecCCC-CCCcchhchHH---Hh-hHHHHHhhCC-CeEEEEccCcc-ccccc----CCCHHHHH-HHHHHHHHHHH
Q 015582 86 FYLYTGRGPS-SEALHLGHLVP---FM-FTKYLQDAFK-VPLVIQLTDDE-KCMWK----NLSVEESQ-RLARENAKDII 153 (404)
Q Consensus 86 ~~iytG~~PT-g~~lHlGh~v~---~~-~~~~lQ~~~~-~~v~I~I~D~~-a~~~~----~~~~e~i~-~~~~~~~~~il 153 (404)
+.+|+ -+|| -+..||||.-+ +. +.+||+..+. +..+-=|+|.. +...+ ..++.++. ++..++.+++-
T Consensus 23 V~mYv-CGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~ 101 (464)
T COG0215 23 VKMYV-CGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMD 101 (464)
T ss_pred EEEEe-cCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 55553 3455 25899999555 43 4566877655 33333399977 44433 35666654 45567777777
Q ss_pred HcCCC
Q 015582 154 ACGFD 158 (404)
Q Consensus 154 A~G~d 158 (404)
|+|+-
T Consensus 102 aL~v~ 106 (464)
T COG0215 102 ALNVL 106 (464)
T ss_pred HhCCC
Confidence 88873
No 55
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=96.13 E-value=0.048 Score=56.98 Aligned_cols=68 Identities=19% Similarity=0.319 Sum_probs=43.8
Q ss_pred CCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC
Q 015582 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (404)
-||| .|||||+..++ .+| +.+..|..+++-|-|.-. ..+.++ ....+..++..+|++.+. .|.||+..
T Consensus 10 SPTG-~lHiG~artAL-~n~l~Ar~~gG~fiLRIEDTD~----~Rs~~~---~~~~I~e~L~wLGI~~De--~y~QSer~ 78 (445)
T PRK12558 10 SPTG-YLHVGNARTAL-LNWLYARKHGGKFILRIDDTDL----ERSKQE---YADAIAEDLKWLGINWDR--TFRQSDRF 78 (445)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEeccCCc----ccchHH---HHHHHHHHHHHcCCCCCc--cccHHHHH
Confidence 4677 89999999995 677 455667888887776432 122222 222444566678998874 46676654
No 56
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.10 E-value=0.0039 Score=63.80 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=53.3
Q ss_pred HHHHHHHhHhCCCCcceeecc---cccCCCCCCCCCCCCCC--CCeeeecCCHHHHHHHhccccccCCcc
Q 015582 251 RMTRDVAPRIGYHKPALIESS---FFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQE 315 (404)
Q Consensus 251 ~l~rdla~r~~~~kp~~l~~~---~lp~L~G~~~KMSkS~~--nsaI~L~D~~~~i~~KI~kyA~t~~~~ 315 (404)
.++|++..+..+..|..++.. ..+|.++ ++|||+|.+ +++||+.|+|+++.+|+++ +||....
T Consensus 196 dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~-~~~i~l~~~~~~~~i~~~d~~D~~~~Ki~k-~~t~~~~ 263 (377)
T TIGR00234 196 DLIRRNLPSLGFGLTVPLLTPADGEKMGKSG-GGAVSLDEGKYDFYQFWINTPDEDVKKILK-LFTFLGL 263 (377)
T ss_pred HHHHHhcCCCceeeceeeecCCCCCCccCCC-CCcccCCccHhhhhhhhcCCcHHHHHHHHH-HcCCCcH
Confidence 388998887777677667655 7889986 589999988 7899999999999999999 9998654
No 57
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=93.18 E-value=0.21 Score=53.65 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=48.5
Q ss_pred EEEecCC--CCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015582 88 LYTGRGP--SSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (404)
Q Consensus 88 iytG~~P--Tg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (404)
+.|=|.| || .|||||+..++ ++| +.+.+|..+++-|-|.-. ... ...+...+..++..+|++++ .+
T Consensus 94 vvtRFaPsPtG-~LHiGharaal-ln~~~Ar~~~G~~iLRidDTDp----~R~---~~e~~~~I~edL~wLGi~~d--~~ 162 (560)
T TIGR00463 94 VVMRFAPNPSG-PLHIGHARAAI-LNQYFAKKYKGKLIIRFDDTDP----RRV---KPEAYDMILEDLDWLGVKGD--EV 162 (560)
T ss_pred eEEEeCCCCCC-CccHHHHHHHH-HHHHHHHhcCCEEEEEeCcCCc----ccc---cHHHHHHHHHHHHHcCCCCC--cc
Confidence 5555554 56 89999999995 566 566678777777766321 111 12344456677778999987 46
Q ss_pred EeCCccC
Q 015582 165 FSDFDYV 171 (404)
Q Consensus 165 ~~~s~~~ 171 (404)
+.||+.+
T Consensus 163 ~~qSd~~ 169 (560)
T TIGR00463 163 VYQSDRI 169 (560)
T ss_pred ccccccH
Confidence 7788876
No 58
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=92.86 E-value=0.084 Score=52.38 Aligned_cols=55 Identities=22% Similarity=0.132 Sum_probs=36.4
Q ss_pred ccccccCch-hHHHHHHHHHhHhCCC-Ccc-eeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQD-PYFRMTRDVAPRIGYH-KPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd-~~~~l~rdla~r~~~~-kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+..+|.||. +|+....-....++.. .|. .+.+.++.. .| |+|||||.+| .|++.|
T Consensus 229 i~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~-g~KmSKS~gn-~v~~~d 286 (312)
T cd00668 229 WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLD-EG-GQKMSKSKGN-VIDPSD 286 (312)
T ss_pred EEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEc-CC-CccccccCCC-cCCHHH
Confidence 567899999 7766655555555543 333 233555553 33 4899999998 998865
No 59
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=92.71 E-value=0.57 Score=50.24 Aligned_cols=86 Identities=20% Similarity=0.287 Sum_probs=51.4
Q ss_pred HHHHHHhCCceEEEEecC--CCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHH
Q 015582 76 ILDAYEKGEKFYLYTGRG--PSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDI 152 (404)
Q Consensus 76 ll~~~~~~~~~~iytG~~--PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~i 152 (404)
+.+.+++|+--.+.|=|. ||| .|||||+-.++ ++| +.+..|..+++-|=|.-. ... ...+...+..++
T Consensus 18 ~~~dl~~~~~~~v~tRFaPsPtG-~LHiG~ar~al-~n~~~Ar~~~G~~iLRieDTd~----~r~---~~e~~~~I~~dL 88 (554)
T PRK05347 18 IDEDLASGKHTRVHTRFPPEPNG-YLHIGHAKSIC-LNFGLAQDYGGKCNLRFDDTNP----EKE---DQEYVDSIKEDV 88 (554)
T ss_pred HHhHHhcCCcCceEEEeCCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEECCCCC----CcC---ChHHHHHHHHHH
Confidence 334455554223555555 456 89999999995 566 556667777776654211 111 123333555667
Q ss_pred HHcCCCCCceEEEeCCccC
Q 015582 153 IACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 153 lA~G~dp~kt~i~~~s~~~ 171 (404)
.-+|++++.- ++.||+..
T Consensus 89 ~wLGi~~d~~-~~~qS~r~ 106 (554)
T PRK05347 89 RWLGFDWSGE-LRYASDYF 106 (554)
T ss_pred HHcCCCCCCC-ceeeecCH
Confidence 7789998432 46677765
No 60
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=92.10 E-value=0.31 Score=48.76 Aligned_cols=69 Identities=14% Similarity=0.274 Sum_probs=40.9
Q ss_pred CCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC
Q 015582 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (404)
.||| .|||||+..++ .+| +.+..|..+++-|=|.-. ..... .....++.++..+|++++ --++.||+-.
T Consensus 9 sPtG-~lHiG~~r~al-~n~~~Ar~~~G~~iLRieDtD~----~R~~~---~~~~~i~~~L~wlGl~~D-~~~~~QS~r~ 78 (314)
T PF00749_consen 9 SPTG-YLHIGHARTAL-LNYLFARKYGGKFILRIEDTDP----ERCRP---EFYDAILEDLRWLGLEWD-YGPYYQSDRL 78 (314)
T ss_dssp -SSS-S-BHHHHHHHH-HHHHHHHHTTSEEEEEEETSST----TTCHH---HHHHHHHHHHHHHT---S-TCEEEGGGGH
T ss_pred CCCC-CcccchhHHHH-HHHHHHhccCceEEEecccccc----ccchh---hHHHHHHhheeEEEEecC-CeEEeHHHHH
Confidence 4777 89999999995 677 456678888877766322 12222 233355566777899886 3355577654
No 61
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.95 E-value=0.21 Score=51.49 Aligned_cols=102 Identities=16% Similarity=0.068 Sum_probs=70.3
Q ss_pred CCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchh--H---HHh---hcCCCCcchhHHHHHHh------hcC--Ch
Q 015582 280 TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESV--E---LHR---KLGANLEVDIPVKYLSF------FLE--DD 343 (404)
Q Consensus 280 ~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~--e---~~~---~~g~~pd~~v~~~~l~~------f~~--~~ 343 (404)
|.+||+|+++|++.+.+.+..|..|++. +||.....+ + +-. ..+.+|-. +=.+|.+ +-+ -.
T Consensus 231 ~a~~~~s~~~Sp~~~yq~~~~i~D~~~~-~~~~~~t~l~~~eI~~i~~~~~~~~~~r~--~k~~LA~e~~~~~hG~~~a~ 307 (401)
T COG0162 231 GAVWLDSEKTSPYDFYQYWMNIEDADVK-RFLKLLTFLSLEEIEEIEKYVLKGPEPRE--AKKLLAKEVTKLVHGEEAAE 307 (401)
T ss_pred CceEccCCCCCcHhhhhcHhcCcHHHHH-HHHHHhCcCChHHHHHHHHHhhcCCChHH--HHHHHHHHhhHhhcCHHHHH
Confidence 3699999999999999999999999999 999765221 1 111 11223311 1112221 111 13
Q ss_pred HHHHHHHHHHhcC---CCCHHHHHH-----HHHHHHHHHhhhHHHHHHH
Q 015582 344 AELEHIKKEYGAG---GMLTGEVKQ-----RLAKVLTELVERHQVARAA 384 (404)
Q Consensus 344 ~eleei~~~~~~G---~~~~~~lK~-----~La~~i~~~l~~~r~~~~~ 384 (404)
+..++.++.|..| .+++.++|. .++..+...|.|.+.....
T Consensus 308 ~a~~~~~~~F~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr 356 (401)
T COG0162 308 AAEEEFEKLFSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARR 356 (401)
T ss_pred HHHHHHHHHHhcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHh
Confidence 4577889999998 899999999 8888888888887765443
No 62
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=91.73 E-value=0.39 Score=51.56 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=47.7
Q ss_pred ceEEEEecCCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015582 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (404)
Q Consensus 85 ~~~iytG~~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (404)
++..=-.=.||| .|||||+-.++ ++| +.+..|..+++-|=|.-.- . ....+...+..++.-+|++++..
T Consensus 51 kv~tRFaPsPtG-~LHiGharaal-ln~~~Ar~~gG~~iLRiEDTDp~----r---~~~e~~~~I~~dL~wLGi~~D~~- 120 (574)
T PTZ00437 51 KPYFRFPPEPNG-FLHIGHAKSMN-LNFGSARAHGGKCYLRYDDTNPE----T---EEQVYIDAIMEMVKWMGWKPDWV- 120 (574)
T ss_pred cEEEEeCCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEECCCCcc----c---cChHHHHHHHHHHHHcCCCCCCC-
Confidence 333333345667 89999999995 566 5566677777766553211 1 22334445666777789998754
Q ss_pred EEeCCccCc
Q 015582 164 IFSDFDYVG 172 (404)
Q Consensus 164 i~~~s~~~~ 172 (404)
+.||++..
T Consensus 121 -~~qS~y~~ 128 (574)
T PTZ00437 121 -TFSSDYFD 128 (574)
T ss_pred -CcCchhHH
Confidence 46777763
No 63
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=91.54 E-value=0.49 Score=50.42 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=44.2
Q ss_pred CCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC
Q 015582 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (404)
.||| .|||||+-.++ ++| +.+.+|..+++-|=|.-. ..+. ..+...+..++.-+|++++.. ++.||+..
T Consensus 8 sPtG-~LHiG~ar~al-~n~~~A~~~~G~~iLRieDTd~----~r~~---~e~~~~I~~dL~wLG~~~d~~-~~~qS~~~ 77 (522)
T TIGR00440 8 EPNG-YLHIGHAKSIC-LNFGYAKYYNGTCNLRFDDTNP----VKED---PEYVESIKRDVEWLGFKWEGK-IRYSSDYF 77 (522)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEEcCCCc----ccCC---hHHHHHHHHHHHHcCCCCCCC-ceEccccH
Confidence 5787 89999999995 666 556677777776655221 1111 233335556677789998432 45577775
No 64
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=90.73 E-value=1.2 Score=49.80 Aligned_cols=86 Identities=20% Similarity=0.331 Sum_probs=51.8
Q ss_pred HHHHHHhCCceEEEEecCC--CCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHH
Q 015582 76 ILDAYEKGEKFYLYTGRGP--SSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDI 152 (404)
Q Consensus 76 ll~~~~~~~~~~iytG~~P--Tg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~i 152 (404)
+.+.++.|+.-.+.|=|.| || .|||||+-.++ ++| +.+.+|..+++-|=|.-. .. ....+...+..++
T Consensus 20 ~~~~l~~g~~~~v~tRFaPsPtG-~lHiGhar~al-ln~~~A~~~~G~~~LR~eDTd~----~r---~~~e~~~~I~~dl 90 (771)
T PRK14703 20 IEEDLEAGRYPRVVTRFPPEPNG-YLHIGHAKSIL-LNFGIARDYGGRCHLRMDDTNP----ET---EDTEYVEAIKDDV 90 (771)
T ss_pred HHHHHhcCCCCceEEEeCcCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEeCCCCC----Cc---CChHHHHHHHHHH
Confidence 3344555443346666655 56 89999999995 666 556667777776644211 11 1123333555666
Q ss_pred HHcCCCCCceEEEeCCccC
Q 015582 153 IACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 153 lA~G~dp~kt~i~~~s~~~ 171 (404)
.-+|++++.. ++.||+..
T Consensus 91 ~wLG~~wd~~-~~~qS~~~ 108 (771)
T PRK14703 91 RWLGFDWGEH-LYYASDYF 108 (771)
T ss_pred HHcCCCCCCC-ceEeecCH
Confidence 6789997643 46677775
No 65
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=90.56 E-value=0.23 Score=50.09 Aligned_cols=54 Identities=26% Similarity=0.204 Sum_probs=32.6
Q ss_pred ccccccCchh-HHHHH--HHHHhHhCCCCc-ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDP-YFRMT--RDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~-~~~l~--rdla~r~~~~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.|+-+ |+-.. .-++ -.+...+ ..+.+.++....| +|||||.+| +|++.|
T Consensus 255 ~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g--~KmSKS~gn-~i~~~~ 312 (338)
T cd00818 255 FILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDG--RKMSKSLGN-YVDPQE 312 (338)
T ss_pred EEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCC--CCCCCCCCC-cCCHHH
Confidence 5677999975 33222 2222 1233222 3334667755665 899999999 998754
No 66
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.16 E-value=0.53 Score=52.39 Aligned_cols=51 Identities=25% Similarity=0.270 Sum_probs=35.2
Q ss_pred ccccccCchhHHHHHHHHH--hHhCCCCcc--eeecccccCCCCCCCCCCCCCCCCeee
Q 015582 239 LIPCAIDQDPYFRMTRDVA--PRIGYHKPA--LIESSFFPALQGETGKMSASDPNSAIY 293 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla--~r~~~~kp~--~l~~~~lp~L~G~~~KMSkS~~nsaI~ 293 (404)
++.-|-| -=+|=++|-++ -++...-|. .+.++++..-+| .|||||.+| .|.
T Consensus 549 llETG~D-ILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~G--RKMSKSLGN-VID 603 (995)
T KOG0432|consen 549 LLETGHD-ILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHG--RKMSKSLGN-VID 603 (995)
T ss_pred hhhcCch-HHHHHHHHHHHhhhhhcCCCCchheeechhhccccc--cccchhhcc-ccC
Confidence 5567888 66666666554 344444553 356889988887 899999999 554
No 67
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=90.13 E-value=0.86 Score=50.25 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=45.3
Q ss_pred CceEEEEec-CCCCCCcchhchHHHh---hHHHHHhhCCCeEEEEccCcc-cc--cc----cCCCHHH-HHHHHHHHHHH
Q 015582 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE-KC--MW----KNLSVEE-SQRLARENAKD 151 (404)
Q Consensus 84 ~~~~iytG~-~PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~D~~-a~--~~----~~~~~e~-i~~~~~~~~~~ 151 (404)
++++|-|++ -|+| .+||||+.+.+ .+.++++.-|..|..+-|+++ .. .. ...++.+ +.++..+..++
T Consensus 2 ~~~~itt~~py~ng-~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANG-PIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCC-cccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 467888888 6887 89999988754 233334445767766655544 32 11 1345444 44455555666
Q ss_pred HHHcCCCCC
Q 015582 152 IIACGFDVT 160 (404)
Q Consensus 152 ilA~G~dp~ 160 (404)
+.++|++.+
T Consensus 81 ~~~l~i~~d 89 (673)
T PRK00133 81 FAGFGISFD 89 (673)
T ss_pred HHHhCCCCC
Confidence 667776543
No 68
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=88.64 E-value=0.32 Score=49.85 Aligned_cols=55 Identities=20% Similarity=0.096 Sum_probs=34.3
Q ss_pred ccccccCchhHHH-HHHHHHhHhCCCCc--ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFR-MTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~-l~rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||-...- ...-.+..+....| .++.+.++..+.| +|||||.+| .|++.|
T Consensus 299 ~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g--~KMSKS~Gn-~v~~~d 356 (382)
T cd00817 299 LLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDG--RKMSKSLGN-VIDPLD 356 (382)
T ss_pred eeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCC--CCccccCCC-CCCHHH
Confidence 5678999875432 22222233333344 3445777766675 899999998 888755
No 69
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=88.63 E-value=0.39 Score=51.79 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=41.9
Q ss_pred ccccccCchhHHHHHHHHHhHhCCCCccee-ecccccCCCCCCCCCCCCCCCCeeeecCCHHH
Q 015582 239 LIPCAIDQDPYFRMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTDSAKA 300 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~ 300 (404)
+-.+|.||..|+.-...++..+|++.|.-+ ++.+-. ..+ .|||||.+| .|.+.|=.++
T Consensus 331 I~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~-V~~--~kmSkr~Gn-~V~~~dll~~ 389 (566)
T TIGR00456 331 IYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGM-VPL--GSMKTRRGN-VISLDNLLDE 389 (566)
T ss_pred EEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEE-EEC--CCCCccCCc-eeeHHHHHHH
Confidence 336899999999999999999998666433 332211 122 699999987 9999864443
No 70
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=88.51 E-value=1.3 Score=36.56 Aligned_cols=64 Identities=22% Similarity=0.245 Sum_probs=35.9
Q ss_pred EEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCC
Q 015582 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD 158 (404)
Q Consensus 88 iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~d 158 (404)
+++|-.| +.+|+||+..+.....++ + .+++.++|.+....+ .....++++.....+.++.+|.+
T Consensus 2 ~~~~G~F--dp~H~GH~~l~~~a~~~~---d-~~i~~i~~~~~~~~~-~~~~~~~~R~~~l~~~~~~~G~~ 65 (105)
T cd02156 2 ARFPGEP--GYLHIGHAKLICRAKGIA---D-QCVVRIDDNPPVKVW-QDPHELEERKESIEEDISVCGED 65 (105)
T ss_pred EEeCCCC--CCCCHHHHHHHHHHHHhC---C-cEEEEEcCCCccccc-CChHHHHHHHHHHHHHHHHHHhh
Confidence 3445455 479999998753322233 3 466778888765422 23455555554444444555653
No 71
>PLN02224 methionine-tRNA ligase
Probab=88.11 E-value=1.1 Score=49.00 Aligned_cols=93 Identities=11% Similarity=0.083 Sum_probs=53.0
Q ss_pred cCcccccCCHHHHHHHHHhCCceEEEEec-CCCCCCcchhchHHHh---hHHHHHhhCCCeEEEE-ccCcccc--cc---
Q 015582 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC--MW--- 133 (404)
Q Consensus 64 Rgi~~~~~d~~~ll~~~~~~~~~~iytG~-~PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~-I~D~~a~--~~--- 133 (404)
|.||+..++.+.- ..++++++|-|+. -|+| .+||||+.+.+ ++.++++.-|..|..+ =.|.|+. ..
T Consensus 52 ~~~~~~~~~~~~~---~~~~~~~~ittp~pY~NG-~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~ 127 (616)
T PLN02224 52 RALYCTSSSQEST---VDEADTFVLTTPLYYVNA-PPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAA 127 (616)
T ss_pred ceeeccCCCcccC---CCCCCeEEEeCCCCCCCC-CCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHH
Confidence 4455555554431 2345678888888 7777 89999988754 2223344446555554 3555652 11
Q ss_pred c-CCCH-HHHHHHHHHHHHHHHHcCCCCC
Q 015582 134 K-NLSV-EESQRLARENAKDIIACGFDVT 160 (404)
Q Consensus 134 ~-~~~~-e~i~~~~~~~~~~ilA~G~dp~ 160 (404)
+ ..+. +-+++++....+.+.++|++++
T Consensus 128 ~~g~~p~e~~~~~~~~~~~~~~~l~I~~D 156 (616)
T PLN02224 128 ANGRNPPEHCDIISQSYRTLWKDLDIAYD 156 (616)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHcCCCCC
Confidence 1 2333 4455555555566667777654
No 72
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=87.78 E-value=0.27 Score=48.92 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=33.1
Q ss_pred ccccccCchhHH----HHHHHHHhHhCC---CCcce-eecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYF----RMTRDVAPRIGY---HKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~----~l~rdla~r~~~---~kp~~-l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+-.+|.||-++. .+-..++...++ +.|.. +.+.++. +.| +|||||.+| +|++.|
T Consensus 227 i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g--~KmSkS~Gn-~v~~~d 288 (314)
T cd00812 227 IYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEG--EKMSKSKGN-VVTPDE 288 (314)
T ss_pred eeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCc--cccCCcCCC-CCCHHH
Confidence 446799985533 233444444553 33432 2344444 554 899999998 999876
No 73
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.35 E-value=1.4 Score=46.67 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=42.6
Q ss_pred ecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015582 91 GRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (404)
Q Consensus 91 G~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (404)
-=+||| .|||||.-..++-.++|.++...+++-.-| + +..-.-++.+ ..++.++--+|+.|++..
T Consensus 206 PPEpSG-yLHIGHAKAALLNqYfa~~~~G~LIvRFDD-T---NPaKE~~eFe---~~IleDl~~LgIkpd~~T 270 (712)
T KOG1147|consen 206 PPEPSG-YLHIGHAKAALLNQYFAQAYQGKLIVRFDD-T---NPAKENEEFE---DVILEDLSLLGIKPDRVT 270 (712)
T ss_pred CCCCCc-eeehhhHHHHHHHHHHHHhcCceEEEEecC-C---CcchhhHHHH---HHHHHHHHHhCcCcceee
Confidence 347787 999999999876667999988888775433 2 1112223333 244566666899987544
No 74
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=86.21 E-value=1.8 Score=48.84 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=46.6
Q ss_pred CCceEEEEecCCC--CCCcchhchHHHh---hHHHHHhhCCCeEEEEcc-Ccccc-cc-----cCCCH-HHHHHHHHHHH
Q 015582 83 GEKFYLYTGRGPS--SEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKC-MW-----KNLSV-EESQRLARENA 149 (404)
Q Consensus 83 ~~~~~iytG~~PT--g~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~-D~~a~-~~-----~~~~~-e~i~~~~~~~~ 149 (404)
++++++..|+ |+ | .||+||+.... +..++|+.-|..|....| |.|+. +. ...+. +-+.++..+..
T Consensus 31 ~~~~~i~~~p-Py~nG-~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 108 (805)
T PRK00390 31 SKKYYVLDMF-PYPSG-GLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMK 108 (805)
T ss_pred CCCEEEEccC-CCCCC-CcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3578888887 76 6 89999988753 333456655766665554 44333 11 12343 33455555666
Q ss_pred HHHHHcCCCCC
Q 015582 150 KDIIACGFDVT 160 (404)
Q Consensus 150 ~~ilA~G~dp~ 160 (404)
.++.++|+..+
T Consensus 109 ~~~~~lGi~~D 119 (805)
T PRK00390 109 KQLKSLGFSYD 119 (805)
T ss_pred HHHHHhCCccc
Confidence 77778888544
No 75
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=85.74 E-value=0.7 Score=53.02 Aligned_cols=54 Identities=24% Similarity=0.185 Sum_probs=32.9
Q ss_pred ccccccCchh-HHHHHHHHHhHhCCCCc--ceeecccccCCCCCCCCCCCCCCCCeeeec
Q 015582 239 LIPCAIDQDP-YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 295 (404)
Q Consensus 239 ~vp~G~DQd~-~~~l~rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~ 295 (404)
+...|.||.. ||.-+--.+--+....| .++.+.++...+| +|||||.+| .|...
T Consensus 586 ~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G--~KMSKSlGN-vIdP~ 642 (961)
T PRK13804 586 LYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKG--EKMSKSLGN-TVSPQ 642 (961)
T ss_pred EEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCC--CCccCCCCC-cCCHH
Confidence 5678999985 44332111111222234 4455778877776 899999998 77543
No 76
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=85.58 E-value=0.46 Score=50.25 Aligned_cols=54 Identities=24% Similarity=0.220 Sum_probs=33.9
Q ss_pred ccccccCchhHHHHH-HHHHhHhCCCCc-ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMT-RDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~-rdla~r~~~~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||..+.-+. .-++..++.+.| ..+++.++. +.| +|||||.+| .|++.|
T Consensus 257 ~~~~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~-~~G--~KMSKS~GN-~i~~~d 312 (511)
T PRK11893 257 VHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLT-LDG--EKMSKSLGN-VIDPFD 312 (511)
T ss_pred ceEecccccccchhHHHHHHHhCCCCCCCEEEeeccEE-ECC--eeecccCCc-EEcHHH
Confidence 467899998743221 112222355556 334466665 565 899999998 999865
No 77
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=85.00 E-value=0.67 Score=52.53 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=33.3
Q ss_pred ccccccCchh-HHHHHHHHHhH-hCCCCcc-eeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDP-YFRMTRDVAPR-IGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~-~~~l~rdla~r-~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||-. |+-.....+-- .+...|. ++.+.++...+| +|||||.+| .|+..|
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G--~KMSKSkGN-vI~p~d 624 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKG--RKMSKSLGN-VVDPLK 624 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCC--CCcCCCCCC-CCCHHH
Confidence 6678999965 44333333322 2433333 333666665565 899999998 887654
No 78
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=84.84 E-value=0.73 Score=52.58 Aligned_cols=52 Identities=29% Similarity=0.250 Sum_probs=33.2
Q ss_pred ccccccCchh-HH--HHHHHHHhHhCCCCcc-eeecccccCCCCCCCCCCCCCCCCeeee
Q 015582 239 LIPCAIDQDP-YF--RMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYV 294 (404)
Q Consensus 239 ~vp~G~DQd~-~~--~l~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L 294 (404)
+...|.||.. |+ .+-..++- .|.+.+. .+.+.++...+| .|||||.+| .|..
T Consensus 548 l~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G--~KMSKSlGN-vIdP 603 (912)
T PRK05743 548 LYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKG--RKMSKSLGN-VIDP 603 (912)
T ss_pred EEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCC--CCCCCCCCC-cCCH
Confidence 5678999964 43 23344443 4544443 334677777776 899999998 6643
No 79
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=84.53 E-value=0.69 Score=50.27 Aligned_cols=53 Identities=26% Similarity=0.226 Sum_probs=30.2
Q ss_pred ccccccCchh-HHHHHHHHHhHhCCCCc--ceeecccccCCCCCCCCCCCCCCCCeeee
Q 015582 239 LIPCAIDQDP-YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV 294 (404)
Q Consensus 239 ~vp~G~DQd~-~~~l~rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L 294 (404)
+..-|.||-. |+....-+...+....| ..+.+.++...+| +|||||.+| .|.+
T Consensus 517 ~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p 572 (601)
T PF00133_consen 517 LYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDG--RKMSKSKGN-VIDP 572 (601)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTS--SB-BTTTTB---BH
T ss_pred cccCCccchhhHHHHhHhhccccccCCchheeeecccccccce--eecccCCCc-ccCH
Confidence 5567999875 44333333333333334 4456778877776 999999998 7754
No 80
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.44 E-value=2.8 Score=45.19 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=42.5
Q ss_pred CceEEEEecC-CCCCCcchhchHHHh---hHHHHHhhCCCeEEEE-ccCcccc--ccc----CCCHHH-HHHHHHHHHHH
Q 015582 84 EKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC--MWK----NLSVEE-SQRLARENAKD 151 (404)
Q Consensus 84 ~~~~iytG~~-PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~-I~D~~a~--~~~----~~~~e~-i~~~~~~~~~~ 151 (404)
++++|-|.+= |.| .+||||+.+.+ ...++|+.-|..++.+ =+|.|+. ..+ ..++++ +.++..+....
T Consensus 5 ~~~~VTtalpY~Ng-~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~ 83 (558)
T COG0143 5 KKILVTTALPYPNG-PPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKEL 83 (558)
T ss_pred CcEEEecCCCCCCC-CcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4556666553 555 89999987654 3344566556666555 4555553 211 366655 44455455555
Q ss_pred HHHcCCC
Q 015582 152 IIACGFD 158 (404)
Q Consensus 152 ilA~G~d 158 (404)
+.+++++
T Consensus 84 ~~~l~Is 90 (558)
T COG0143 84 FKALNIS 90 (558)
T ss_pred HHHhCCc
Confidence 5565553
No 81
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=82.55 E-value=2.4 Score=43.63 Aligned_cols=54 Identities=26% Similarity=0.289 Sum_probs=28.4
Q ss_pred ccccccCchhHHHHH-HHHHhHhCCCCcceee-cccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~-rdla~r~~~~kp~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+..+|.|--++.-+- =-+.--.+.+.|..+. +.++. +.| +|||||.+| +||..|
T Consensus 285 v~~iGkDi~~fH~i~~pa~l~a~~~~lP~~i~~~~~~~-~~g--~K~SkS~gn-~i~~~~ 340 (391)
T PF09334_consen 285 VHFIGKDIIRFHAIYWPAMLLAAGLPLPRRIVVHGFLT-LDG--EKMSKSRGN-VIWPDD 340 (391)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHCTB---SEEEEE--EE-ETT--CCEETTTTE-SSBHHH
T ss_pred EEEEccchhHHHHHHhHHHHhcccCCCCCEEEeeeeEE-ECC--eeccccCCc-ccCHHH
Confidence 445677755544333 1111225556665544 33443 565 899999988 998744
No 82
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.37 E-value=1.6 Score=49.51 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=36.9
Q ss_pred ccccccCch-hHHHHHHHHHhHhCCCCc--ceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHH
Q 015582 239 LIPCAIDQD-PYFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 304 (404)
Q Consensus 239 ~vp~G~DQd-~~~~l~rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~K 304 (404)
++.=|.||. .||.-.--+.--+....| ..+.+.|+..=+| .|||||.+| .| +|++|-+|
T Consensus 558 ~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~G--rKMSKSlGN-~v----~P~~V~~~ 619 (933)
T COG0060 558 FYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKG--RKMSKSLGN-VV----DPQDVIDK 619 (933)
T ss_pred EEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCC--CCccccCCC-cC----CHHHHHHh
Confidence 566699995 677655333333333345 3455667666665 999999999 54 45556554
No 83
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=81.79 E-value=3.5 Score=44.27 Aligned_cols=54 Identities=26% Similarity=0.432 Sum_probs=32.5
Q ss_pred ccccccCchhHHHHH-HHHHhHhC--CCCcc-eeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMT-RDVAPRIG--YHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~-rdla~r~~--~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.|+-++..+. --+..-.+ ++.|. ++.+.++. ++| +|||||.+| .|+..|
T Consensus 290 ~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~~G--~KMSKS~GN-~I~p~d 347 (556)
T PRK12268 290 YYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-LEG--GKFSKSRGW-GIWVDD 347 (556)
T ss_pred EEEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-ECC--eeeccCCCc-ccCHHH
Confidence 456799987755432 22233333 44453 33355554 454 899999998 887655
No 84
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=81.06 E-value=0.95 Score=45.12 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=32.1
Q ss_pred ccccccCchhHHHHH-HHHHhHhCCCCcceee-cccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~-rdla~r~~~~kp~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+..+|.|+-.+.-+. --+..-.+.+.|..++ +.++ .+.| +|||||.+| .|++.|
T Consensus 238 v~~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~-~~~g--~kmSkS~gn-~i~~~~ 293 (319)
T cd00814 238 VHFIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYL-TVEG--KKMSKSRGN-VVDPDD 293 (319)
T ss_pred EEEEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeE-EECC--eeecccCCc-ccCHHH
Confidence 446899988754322 1122234555454443 4443 4454 899999998 998754
No 85
>PLN02286 arginine-tRNA ligase
Probab=80.52 E-value=4.3 Score=44.00 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=45.6
Q ss_pred cccccccCchhHHHHHHHHHhHhCCCCc------ceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHH
Q 015582 238 CLIPCAIDQDPYFRMTRDVAPRIGYHKP------ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 302 (404)
Q Consensus 238 ~~vp~G~DQd~~~~l~rdla~r~~~~kp------~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~ 302 (404)
++-.+|.||..|+.-...+++.+|+.++ .++...+|-++.| +||||-.++ .|+|.|=-+++.
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g--~kmStR~G~-~v~L~dlldea~ 397 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG--KRFRTRSGE-VVRLVDLLDEAK 397 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC--CcccCCCCC-eeEHHHHHHHHH
Confidence 4456899999999999999999997522 2233456755665 799887776 999998555443
No 86
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=80.04 E-value=6.9 Score=42.46 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=49.7
Q ss_pred cccccccCchhHHHHHHHHHhHhCCCCcc-eeecccccCCC-CCCCCCCCCCCCCeeeecCCHHHHHHHh
Q 015582 238 CLIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQ-GETGKMSASDPNSAIYVTDSAKAIKNKI 305 (404)
Q Consensus 238 ~~vp~G~DQd~~~~l~rdla~r~~~~kp~-~l~~~~lp~L~-G~~~KMSkS~~nsaI~L~D~~~~i~~KI 305 (404)
++--+|.||..|+.-.+-++..+|+..+. .+.+..+.... |.+.||||=.++ .|.|.|--+++.+|-
T Consensus 337 ~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~-~vtl~dllde~~era 405 (577)
T COG0018 337 LIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN-VVTLDDLLDEAGERA 405 (577)
T ss_pred EEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc-eEEHHHHHHHHHHHh
Confidence 55578999999999999999999987663 33333333333 346899999888 999999777776443
No 87
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=79.13 E-value=2.2 Score=46.12 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=42.1
Q ss_pred ccccccCchhHHHHHHHHHhHhCCCCcc-e--eecccccCCCCCCCCCCCCCCCCeeeecCCHHH
Q 015582 239 LIPCAIDQDPYFRMTRDVAPRIGYHKPA-L--IESSFFPALQGETGKMSASDPNSAIYVTDSAKA 300 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r~~~~kp~-~--l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~ 300 (404)
+-.+|.||..|+.-...+++.+|+..+. . +...+|- +. |+||||-.++ +|.|+|=-++
T Consensus 328 IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~--g~kmStR~G~-~v~l~dLlde 388 (562)
T PRK12451 328 LYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KD--GKKMSTRKGR-VVLLEEVLEE 388 (562)
T ss_pred EEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cC--CCCCcCCCCC-eeEHHHHHHH
Confidence 3368999999999999999999975332 2 2223343 34 4799999887 9999884443
No 88
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=78.88 E-value=1.6 Score=49.45 Aligned_cols=54 Identities=24% Similarity=0.210 Sum_probs=35.1
Q ss_pred ccccccCchhHHHHHHHHHh--HhCCCCc--ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMTRDVAP--RIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~--r~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||-.+. +++-++. .+....| .++.+.++...+| +|||||.+| .|++.|
T Consensus 481 ~~~~G~Dii~fw-~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKS~GN-~i~p~~ 538 (861)
T TIGR00422 481 LLVTGYDIIFFW-VARMIFRSLALTGQVPFKEVYIHGLVRDEQG--RKMSKSLGN-VIDPLD 538 (861)
T ss_pred eeecchhhhhHH-HHHHHHHHHHhcCCCchheEEEeeEEECCCC--CCCCcCCCC-CCCHHH
Confidence 567899987654 2333332 2322445 3445778877776 899999998 887654
No 89
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=78.61 E-value=1.7 Score=50.07 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=31.2
Q ss_pred ccccccCchh-HHHHHHHHHhH-hCCCCc-ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDP-YFRMTRDVAPR-IGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~-~~~l~rdla~r-~~~~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
++..|.||-. |+-....+.-- ++.+.+ ..+.+.++...+| +|||||.+| .|+..|
T Consensus 548 ~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G--~KMSKSlGN-vIdP~d 605 (975)
T PRK06039 548 FIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDG--QKMSKSLGN-YVDPFE 605 (975)
T ss_pred EEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCC--CCcCCCCCC-cCCHHH
Confidence 5567999975 22222222111 232222 3334666666665 899999998 776544
No 90
>PLN02843 isoleucyl-tRNA synthetase
Probab=78.47 E-value=1.9 Score=49.61 Aligned_cols=52 Identities=27% Similarity=0.224 Sum_probs=31.0
Q ss_pred ccccccCchh-HH-HHH-HHHHhHhCCCCc-ceeecccccCCCCCCCCCCCCCCCCeeee
Q 015582 239 LIPCAIDQDP-YF-RMT-RDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 294 (404)
Q Consensus 239 ~vp~G~DQd~-~~-~l~-rdla~r~~~~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L 294 (404)
+...|.||.. |+ .+. .-++- .|...+ ..+.|.++..-+| +|||||.+| .|..
T Consensus 567 l~~eG~Di~rgWf~s~l~~~~~~-~g~~Pfk~v~~HG~vld~~G--~KMSKSlGN-vI~p 622 (974)
T PLN02843 567 LYLEGSDQHRGWFQSSLLTSVAT-KGKAPYKSVLTHGFVLDEKG--FKMSKSLGN-VVDP 622 (974)
T ss_pred eeeeeccccchHHHHHHHHHHHh-cCCCccceEEEeccEECCCC--CCcCCCCCC-cCCH
Confidence 5678999987 22 222 22221 333222 3345777766665 899999998 6654
No 91
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=77.98 E-value=1.8 Score=49.18 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=35.5
Q ss_pred ccccccCchhHHHHHHHHHhHh--CCCCc--ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMTRDVAPRI--GYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r~--~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||-.+. ++|-++..+ ....| .++.+.++...+| +|||||.+| .|+..|
T Consensus 476 ~~~~G~Dii~~W-~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKSlGN-vIdP~d 533 (874)
T PRK05729 476 VLVTGFDIIFFW-VARMIMMGLHFTGQVPFKDVYIHGLVRDEQG--RKMSKSKGN-VIDPLD 533 (874)
T ss_pred cccccccccchH-HHHHHHHHHHhcCCCchhheEEeeeEECCCC--CCcccCCCC-CCCHHH
Confidence 567899987653 344444332 22345 4445778877776 899999998 787654
No 92
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=77.92 E-value=1.7 Score=48.86 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=32.0
Q ss_pred ccccccCchhHHHHHHHHHhH--hCCCCc--ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r--~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||-.+ -+.+-++.. +....| ..+.+.++...+| +|||||.+| .|++.|
T Consensus 489 ~~~~G~Di~~~-w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~ 546 (800)
T PRK13208 489 LRPQGHDIIRT-WLFYTILRAYLLTGKLPWKNIMISGMVLDPDG--KKMSKSKGN-VVTPEE 546 (800)
T ss_pred EEEeecchhhh-HHHHHHHHHHHhcCCCCcceEEEeeEEECCCC--CCCCCCCCC-CCCHHH
Confidence 45678898752 223333222 222234 3344667766675 899999998 787644
No 93
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=77.67 E-value=11 Score=41.70 Aligned_cols=51 Identities=22% Similarity=0.237 Sum_probs=32.4
Q ss_pred cccccCchhHHHHH---HHHHhHhCCCCcceee-cccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 240 IPCAIDQDPYFRMT---RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 240 vp~G~DQd~~~~l~---rdla~r~~~~kp~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
..+|.|=..++.+. .=++ .|++.|..+. +.++.. +| +|||||.+| .|+..|
T Consensus 288 ~~iGkDi~~fH~i~wpa~l~a--~g~~lP~~v~~hg~v~~-~G--~KMSKS~GN-vV~p~d 342 (673)
T PRK00133 288 HFIGKDIIYFHTLFWPAMLEG--AGYRLPTNVFAHGFLTV-EG--AKMSKSRGT-FIWART 342 (673)
T ss_pred EEEeecchhHHHHHHHHHHHh--CCCCCCCEEeeeccEEe-cC--CcccccCCc-ccCHHH
Confidence 35788866654332 2223 5566664443 556654 65 899999998 888755
No 94
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=77.61 E-value=4 Score=45.85 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=54.0
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEec-CCCCCCcchhchHHHh---hHHHHHhhCCCeEEEEccCcccc-c-
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDEKC-M- 132 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~-~PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~D~~a~-~- 132 (404)
....+-++|....|.+. .+++++..=| =||| .||+||.-... +..++++.-|-.|.--+| ++++ +
T Consensus 16 ~~W~e~~~Fe~~~d~~~-------~~Kfyvl~mfPYpSG-~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlP 86 (814)
T COG0495 16 KRWEEAKVFEADEDSDK-------PEKFYVLVMFPYPSG-ALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLP 86 (814)
T ss_pred HHHHhcCCcccCCCCCC-------CCceEEEeCCCCCCC-CcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCch
Confidence 45556666665554221 0467776655 4787 79999966543 444556655776666666 6665 1
Q ss_pred -c-----cC-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 015582 133 -W-----KN-LSVEESQRLARENAKDIIACGFDVT 160 (404)
Q Consensus 133 -~-----~~-~~~e~i~~~~~~~~~~ilA~G~dp~ 160 (404)
. .. .+..=+..|.....+++.++||.-+
T Consensus 87 ae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siD 121 (814)
T COG0495 87 AENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSID 121 (814)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCccc
Confidence 0 11 2222244455555667778888654
No 95
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=76.99 E-value=1.7 Score=46.32 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=33.0
Q ss_pred ccccccCchhHHHHH-HHHHhHhCCCCccee-ecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~-rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+..+|.|...+.-+. .-+..-++.+.|..+ .+.++. +.| .|||||.+| .|++.|
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~-~~g--~KmSKS~Gn-~i~~~d 340 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLT-VEG--GKMSKSLGN-VVDPSD 340 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEE-ECC--ceecccCCc-eecHHH
Confidence 567899988854332 122333455545333 344553 334 899999998 898765
No 96
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=76.81 E-value=15 Score=41.73 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=51.1
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHh---hHHHHHhhCCCeEEEEccCc-ccc-cc-
Q 015582 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDD-EKC-MW- 133 (404)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~D~-~a~-~~- 133 (404)
.+.+.++|....+ ..++++++..|+=...+.||+||+.... +..++++.-|..|....|-+ ++. +.
T Consensus 13 ~W~~~~~f~~~~~--------~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~ 84 (842)
T TIGR00396 13 KWKENKVFKFTDD--------SNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAEN 84 (842)
T ss_pred HHHhcCCcccCCC--------CCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHH
Confidence 4455566644322 2334577877743223489999988753 33345555577776665533 333 11
Q ss_pred ----cCCCH-HHHHHHHHHHHHHHHHcCCCC
Q 015582 134 ----KNLSV-EESQRLARENAKDIIACGFDV 159 (404)
Q Consensus 134 ----~~~~~-e~i~~~~~~~~~~ilA~G~dp 159 (404)
...+. +-+.++..+..+++.++|+..
T Consensus 85 ~a~~~g~~p~~~~~~~~~~~~~~~~~lG~~~ 115 (842)
T TIGR00396 85 AAIKRGIHPAKWTYENIANMKKQLQALGFSY 115 (842)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 12333 334555566667777888643
No 97
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=76.55 E-value=9.2 Score=42.15 Aligned_cols=75 Identities=28% Similarity=0.415 Sum_probs=43.5
Q ss_pred CceEEEEecCCC-CCCcchhchHH---Hh-hHHHHHhhCCCeEEEE--ccCcc-ccccc----CCC-HHH-HHHHHHHHH
Q 015582 84 EKFYLYTGRGPS-SEALHLGHLVP---FM-FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLS-VEE-SQRLARENA 149 (404)
Q Consensus 84 ~~~~iytG~~PT-g~~lHlGh~v~---~~-~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~-~e~-i~~~~~~~~ 149 (404)
+.+.+|+ -+|| -+.+||||.-. +. +.++|++.+|..|..+ |+|.. +...+ .++ +.+ ++.+..+..
T Consensus 59 ~~v~~Y~-CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~ 137 (651)
T PTZ00399 59 RQVRWYT-CGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFF 137 (651)
T ss_pred CeeEEEE-eCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3444443 3455 24899999655 43 4455665667665544 67655 33322 355 544 455556777
Q ss_pred HHHHHcCCCC
Q 015582 150 KDIIACGFDV 159 (404)
Q Consensus 150 ~~ilA~G~dp 159 (404)
.++-++|+.+
T Consensus 138 ~d~~~Lni~~ 147 (651)
T PTZ00399 138 EDMKALNVRP 147 (651)
T ss_pred HHHHHcCCCC
Confidence 7777888754
No 98
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=76.35 E-value=1.3 Score=48.50 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=32.7
Q ss_pred ccccccCchhHHHHH-HHHHhHhCCCCcceee-cccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~-rdla~r~~~~kp~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||..+.-+- --+..-.+.+.|..+. +.++. +. |+|||||.+| .|+..|
T Consensus 257 ~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~-~e--g~KMSKS~GN-~i~p~d 312 (648)
T PRK12267 257 VHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWL-MK--DGKMSKSKGN-VVDPEE 312 (648)
T ss_pred eEEEeeeecchhHHHHHHHHHhCCCCCCcEEEecceEE-EC--CceecccCCc-ccCHHH
Confidence 456899998744322 1112224565664443 44443 34 4899999998 888755
No 99
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=76.24 E-value=7.1 Score=41.26 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=37.5
Q ss_pred CCCCCcchhchHHHh----hHHHHHhhCCCeEEEE-ccCcccc--cc---c-CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 015582 94 PSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ-LTDDEKC--MW---K-NLSVEE-SQRLARENAKDIIACGFDVT 160 (404)
Q Consensus 94 PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~-I~D~~a~--~~---~-~~~~e~-i~~~~~~~~~~ilA~G~dp~ 160 (404)
|+| .+||||+.+++ +.++++. .|..|..+ =.|++.. .. + ..+..+ ++++..+..+++.++|++++
T Consensus 12 ~~g-~~HiGh~~~~~~~Dv~~R~~r~-~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D 88 (511)
T PRK11893 12 PNG-KPHIGHAYTTLAADVLARFKRL-RGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYD 88 (511)
T ss_pred CCC-CcccchhHHHHHHHHHHHHHHh-cCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 345 89999977653 3444544 46666554 3444432 11 1 245544 44455666677888898765
No 100
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=76.12 E-value=2.3 Score=49.39 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=34.7
Q ss_pred ccccccCchhHHHHHHHHHhHhC--CCCc--ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r~~--~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||-.++ ++|-++..+. ...| .++.+.++..-+| +|||||.+| .|+..|
T Consensus 494 ~~~~G~Dii~~W-~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G--~KMSKSkGN-vIdP~d 551 (1052)
T PRK14900 494 VMETGHDIIFFW-VARMMMMGLHFMGEVPFRTVYLHPMVRDEKG--QKMSKTKGN-VIDPLV 551 (1052)
T ss_pred hhcccccHHhHH-HHHHHHHHHHhcCCCccceeEecccEECCCC--CCccCCCCC-CCCHHH
Confidence 556798987543 3454544332 2345 3445777776665 899999998 887655
No 101
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=75.74 E-value=1.6 Score=46.85 Aligned_cols=72 Identities=24% Similarity=0.381 Sum_probs=32.6
Q ss_pred EEEecCCC-CCCcchhchHHH-----hhHHHHHhhCCCeEEEEc-cCcccc-c----cc-CCCHHH-HHHHHHHHHHHHH
Q 015582 88 LYTGRGPS-SEALHLGHLVPF-----MFTKYLQDAFKVPLVIQL-TDDEKC-M----WK-NLSVEE-SQRLARENAKDII 153 (404)
Q Consensus 88 iytG~~PT-g~~lHlGh~v~~-----~~~~~lQ~~~~~~v~I~I-~D~~a~-~----~~-~~~~e~-i~~~~~~~~~~il 153 (404)
+.|+-=|+ .+.+||||+.+. ++.+++. .-|..|..+. .|.|.. + .+ ..+..+ +.+++....+++.
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r-~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 84 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQR-LKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFK 84 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHH-hcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 33444444 126888886654 2344433 3355555442 233322 1 11 244433 2344444445555
Q ss_pred HcCCCCC
Q 015582 154 ACGFDVT 160 (404)
Q Consensus 154 A~G~dp~ 160 (404)
++|++++
T Consensus 85 ~l~i~~d 91 (556)
T PRK12268 85 KLGISYD 91 (556)
T ss_pred HcCCcCC
Confidence 5665543
No 102
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=75.00 E-value=7 Score=41.66 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=38.3
Q ss_pred CCCCCcchhchHHHh---hHHHHHhhCCCeEEEEc-cCcccc--c---cc-CCCHHHHHH-HHHHHHHHHHHcCCCCC
Q 015582 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEKC--M---WK-NLSVEESQR-LARENAKDIIACGFDVT 160 (404)
Q Consensus 94 PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I-~D~~a~--~---~~-~~~~e~i~~-~~~~~~~~ilA~G~dp~ 160 (404)
|+| .+||||+.+++ ++.+.++..|..|..+. .|.+.. . .+ ..+..++.. +.....+++.++|++++
T Consensus 10 ~ng-~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 86 (530)
T TIGR00398 10 ANG-KPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFD 86 (530)
T ss_pred CCC-CcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 666 89999988754 23333444576666543 344322 1 11 356665444 44555667778888765
No 103
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=74.95 E-value=1 Score=46.42 Aligned_cols=36 Identities=33% Similarity=0.641 Sum_probs=20.8
Q ss_pred CCCCCcchhchHHHh----hHHHHHhhCCCeEEEE-ccCcccc
Q 015582 94 PSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ-LTDDEKC 131 (404)
Q Consensus 94 PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~-I~D~~a~ 131 (404)
|.| .|||||+.+.+ +.+|++. -|..+.++ =+|.|+.
T Consensus 10 ~Ng-~lHlGH~~~~l~ADv~aR~~r~-~G~~v~~~tGtDehG~ 50 (391)
T PF09334_consen 10 PNG-DLHLGHLYPYLAADVLARYLRL-RGHDVLFVTGTDEHGS 50 (391)
T ss_dssp TSS-S-BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEE-SSH
T ss_pred CCC-CCCCChhHHHHHHHHHHHHHhh-cccceeeEEecchhhH
Confidence 566 79999988764 3444444 46666554 4676653
No 104
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=74.84 E-value=17 Score=41.60 Aligned_cols=53 Identities=21% Similarity=0.173 Sum_probs=29.8
Q ss_pred ccccccCchhH-HHHHHHHHhHhCC---CCc-ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPY-FRMTRDVAPRIGY---HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~-~~l~rdla~r~~~---~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||-.+ .-..+-. ...-+ +-| ..+.+.++.. +| +|||||.+| .|++.+
T Consensus 533 ~~~~GkDii~~Hl~~~~~~-~~a~~~~~~~Pk~v~~hG~vl~-~G--~KMSKS~GN-vVdp~e 590 (897)
T PRK12300 533 WRHSGKDLIPNHLTFFIFN-HVAIFPEEKWPRGIVVNGFVLL-EG--KKMSKSKGN-VIPLRK 590 (897)
T ss_pred EEEeeeccCccHHHHHHHH-HHHhcCCCccCcEEEEcceEEE-CC--ccccCcCCC-CCCHHH
Confidence 55789999652 2222111 11111 233 3444666654 54 899999999 776544
No 105
>PLN02946 cysteine-tRNA ligase
Probab=74.60 E-value=12 Score=40.38 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=42.0
Q ss_pred ceEEEEecCCC-CCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCcc-ccccc----CCCHHHH-HHHHHHHHHH
Q 015582 85 KFYLYTGRGPS-SEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAKD 151 (404)
Q Consensus 85 ~~~iytG~~PT-g~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i-~~~~~~~~~~ 151 (404)
.+.+|+ -+|| -+.+||||+.+++ +.+||. ..|..|..+ ++|.. +...+ ..++.++ .++..+..++
T Consensus 80 ~v~~Y~-CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr-~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d 157 (557)
T PLN02946 80 KVGMYV-CGVTAYDLSHIGHARVYVTFDVLYRYLK-HLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSD 157 (557)
T ss_pred ceeEEE-eCCccCCCCccccchhhHHHHHHHHHHH-hcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 455553 2566 2389999976653 344454 456666544 55544 33322 3666554 4555666777
Q ss_pred HHHcCCC
Q 015582 152 IIACGFD 158 (404)
Q Consensus 152 ilA~G~d 158 (404)
+.++|+.
T Consensus 158 ~~~LnI~ 164 (557)
T PLN02946 158 MAYLHCL 164 (557)
T ss_pred HHHCCCC
Confidence 8888875
No 106
>PLN02381 valyl-tRNA synthetase
Probab=74.47 E-value=2.5 Score=49.06 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=33.9
Q ss_pred ccccccCchhHHHHHHHHHhH--hCCCCc--ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r--~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
++..|.||-.+. ++|-++.. +....| .++.+.++..-+| .|||||.+| .|...|
T Consensus 611 ~~~~G~Dii~~W-~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G--~KMSKS~GN-vIdP~~ 668 (1066)
T PLN02381 611 VLETGHDILFFW-VARMVMMGMQLGGDVPFRKVYLHPMIRDAHG--RKMSKSLGN-VIDPLE 668 (1066)
T ss_pred eeeecchhhhhH-HHHHHHHHHHhCCCCchHHheecceEECCCC--CCCCCCCCC-CCCHHH
Confidence 456788876432 33333333 333455 3445778888776 899999998 775433
No 107
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=74.09 E-value=8.1 Score=38.43 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=37.0
Q ss_pred CCCCcchhchHHHh---hHHHHHhhCCCeEEEE-ccCcccc-c-c---c-CCCHHHHHH-HHHHHHHHHHHcCCCCC
Q 015582 95 SSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC-M-W---K-NLSVEESQR-LARENAKDIIACGFDVT 160 (404)
Q Consensus 95 Tg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~-I~D~~a~-~-~---~-~~~~e~i~~-~~~~~~~~ilA~G~dp~ 160 (404)
+| .+||||+.+.. ++.++++..|..|..+ =.|.+.. + . + ..++.++.+ +...+.+++.++|++++
T Consensus 12 ng-~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 87 (319)
T cd00814 12 NG-VPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFD 87 (319)
T ss_pred CC-CcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 46 89999988754 2223344446555544 2444432 1 1 1 356665544 34455667778898775
No 108
>PLN02959 aminoacyl-tRNA ligase
Probab=73.84 E-value=2.8 Score=48.81 Aligned_cols=54 Identities=17% Similarity=0.005 Sum_probs=29.3
Q ss_pred ccccccCchhHH-HHHHHHHhHhCCCCcc---eeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYF-RMTRDVAPRIGYHKPA---LIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~-~l~rdla~r~~~~kp~---~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+..-|.||-... ..++-...-+....|. .+.+.++. ++| +|||||.+| .|.+.|
T Consensus 674 l~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G--~KMSKSkGN-vI~p~d 731 (1084)
T PLN02959 674 LRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLM-LNS--EKMSKSTGN-FLTLRQ 731 (1084)
T ss_pred EEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEe-cCC--cCccccCCC-cCCHHH
Confidence 456688986543 3332111111112332 22344444 565 999999998 777654
No 109
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=73.63 E-value=2.8 Score=43.16 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=40.4
Q ss_pred ceEEE-EecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCcc-ccccc----CCCHHHH-HHHHHHHHHH
Q 015582 85 KFYLY-TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAKD 151 (404)
Q Consensus 85 ~~~iy-tG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i-~~~~~~~~~~ 151 (404)
.+.+| ||-=|-+ .+||||+.+++ +.+||+. .|..|..+ ++|.. +...+ ..+++++ +++.....++
T Consensus 9 ~v~~YvCGpTvY~-~~HIGh~r~~V~~Dvl~R~lr~-~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d 86 (384)
T PRK12418 9 TATMYVCGITPYD-ATHLGHAATYLAFDLVNRVWRD-AGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRED 86 (384)
T ss_pred eeEEEecCCCCCC-CCccchhHHHHHHHHHHHHHHH-cCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44444 4544445 89999977653 3444554 56555444 45433 23221 3666664 4455566677
Q ss_pred HHHcCC
Q 015582 152 IIACGF 157 (404)
Q Consensus 152 ilA~G~ 157 (404)
+.++|+
T Consensus 87 ~~~Lni 92 (384)
T PRK12418 87 MEALRV 92 (384)
T ss_pred HHHhCC
Confidence 778886
No 110
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=73.25 E-value=11 Score=39.86 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=45.1
Q ss_pred hCCceEEEEecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCcc-cccc----cCCCHHHHH-HHHHHHH
Q 015582 82 KGEKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMW----KNLSVEESQ-RLARENA 149 (404)
Q Consensus 82 ~~~~~~iytG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~~-a~~~----~~~~~e~i~-~~~~~~~ 149 (404)
.++.-...||-=|.+ .+||||..+++ +.++|+. .|..|..+ ++|.. +... ...++.++. .+.....
T Consensus 19 ~~~v~~yvcgptvy~-~~HiGhar~~v~~Dvl~R~lr~-~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~ 96 (465)
T TIGR00435 19 QGKVKMYVCGPTVYD-YCHIGHARTAIVFDVLRRYLRY-LGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYF 96 (465)
T ss_pred CCcceEEEecCccCC-CcccccchHHHHHHHHHHHHHH-cCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344455667888887 89999976653 3444554 46665544 33322 2221 136665554 4445666
Q ss_pred HHHHHcCCCCC
Q 015582 150 KDIIACGFDVT 160 (404)
Q Consensus 150 ~~ilA~G~dp~ 160 (404)
.++.++|+.++
T Consensus 97 ~dl~~LgI~~d 107 (465)
T TIGR00435 97 EDMKALNVLPP 107 (465)
T ss_pred HHHHHhCCCCC
Confidence 77778888643
No 111
>PLN02943 aminoacyl-tRNA ligase
Probab=72.94 E-value=2.3 Score=48.90 Aligned_cols=54 Identities=24% Similarity=0.174 Sum_probs=34.9
Q ss_pred ccccccCchhHHHHHHHHHhHhC--CCCc-c-eeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMTRDVAPRIG--YHKP-A-LIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r~~--~~kp-~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||-.+ =++|-++..+. ...| . .+.+.++...+| +|||||.+| .|+..|
T Consensus 539 l~~~G~Dii~f-W~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~ 596 (958)
T PLN02943 539 VLETGHDILFF-WVARMVMMGIEFTGTVPFSYVYLHGLIRDSQG--RKMSKTLGN-VIDPLD 596 (958)
T ss_pred EEEEeehHHHH-HHHHHHHhhhhhcCCCChheEEEeccEECCCC--CcccCcCCC-CCCHHH
Confidence 55679998743 34454443322 2345 2 445777777776 899999998 887655
No 112
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=72.75 E-value=12 Score=40.98 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=41.4
Q ss_pred CceEEEEecC-CCCCCcchhchHHHh---hHHHHHhhCCCeEEEE-ccCcccc-c-c----cCCCHHHH-HHHHHHHHHH
Q 015582 84 EKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC-M-W----KNLSVEES-QRLARENAKD 151 (404)
Q Consensus 84 ~~~~iytG~~-PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~-I~D~~a~-~-~----~~~~~e~i-~~~~~~~~~~ 151 (404)
++++|-|.+= |+| .+||||+.+.+ +..++++..|..+..+ =+|.|.. + . ...+..++ .++......+
T Consensus 4 ~~~~it~~~py~ng-~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~ 82 (648)
T PRK12267 4 KTFYITTPIYYPNG-KPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKEL 82 (648)
T ss_pred CCEEEeeCCCCCCC-CcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455444432 346 89999987654 2233344446555444 4565543 1 1 13555554 3444555566
Q ss_pred HHHcCCCCC
Q 015582 152 IIACGFDVT 160 (404)
Q Consensus 152 ilA~G~dp~ 160 (404)
+.++|++.+
T Consensus 83 l~~lgI~~D 91 (648)
T PRK12267 83 WKKLDISYD 91 (648)
T ss_pred HHHcCCCCC
Confidence 778888665
No 113
>PLN02563 aminoacyl-tRNA ligase
Probab=72.75 E-value=2 Score=49.35 Aligned_cols=14 Identities=43% Similarity=0.432 Sum_probs=11.0
Q ss_pred CCCCCCCCCeeeecC
Q 015582 282 KMSASDPNSAIYVTD 296 (404)
Q Consensus 282 KMSkS~~nsaI~L~D 296 (404)
|||||.+| .|...+
T Consensus 723 KMSKSKGN-vVdP~e 736 (963)
T PLN02563 723 KMSKSRGN-VVNPDD 736 (963)
T ss_pred ccccccCC-cCCHHH
Confidence 99999998 775433
No 114
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=72.37 E-value=3.1 Score=29.74 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=26.4
Q ss_pred CCccHHHHHHhhCCCcCChHHHHHHHHhhCCC
Q 015582 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRP 57 (404)
Q Consensus 26 ~~~dy~~l~~~fg~~~i~~~~~~~~~~~~~~~ 57 (404)
..||+++++. ||-+|||++.-.-+..++|++
T Consensus 16 ~kvdWd~wvS-f~GrPltdevK~a~k~i~~~~ 46 (49)
T PF06543_consen 16 PKVDWDKWVS-FDGRPLTDEVKEAMKLIFGKR 46 (49)
T ss_pred cccchHHhee-eCCeeCCHHHHHHHHHHHhhh
Confidence 4699999998 999999999888888877763
No 115
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=71.96 E-value=12 Score=39.78 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=42.8
Q ss_pred ceEEE-EecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCc----------c-cccc----cCCCHHH-H
Q 015582 85 KFYLY-TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDD----------E-KCMW----KNLSVEE-S 141 (404)
Q Consensus 85 ~~~iy-tG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~----------~-a~~~----~~~~~e~-i 141 (404)
.+.+| ||--+-+ .+||||+.+++ +.+||+ ..|..|..+ |+|. . +... ...++.+ +
T Consensus 23 ~v~mYvCGpTvy~-~~HiGhar~~v~~Dvl~R~l~-~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a 100 (490)
T PRK14536 23 HVRLYGCGPTVYN-YAHIGNLRTYVFQDTLRRTLH-FLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIA 100 (490)
T ss_pred ceEEEeeCCccCC-CcccchhHHHHHHHHHHHHHH-hcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHH
Confidence 45555 4444445 89999976643 344555 456555444 6776 2 2221 1355544 4
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 015582 142 QRLARENAKDIIACGFDVT 160 (404)
Q Consensus 142 ~~~~~~~~~~ilA~G~dp~ 160 (404)
.++..+..+++.++|+.+.
T Consensus 101 ~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 101 AHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 4555677778888888653
No 116
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=71.64 E-value=8.3 Score=38.12 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=20.1
Q ss_pred CCCCCcchhchHHHh----hHHHHHhhCCCeEEEE-ccCccc
Q 015582 94 PSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ-LTDDEK 130 (404)
Q Consensus 94 PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~-I~D~~a 130 (404)
|+| .+||||+.+.+ +.+++.. -|..|..+ =.|.+.
T Consensus 11 ~~g-~~HiGH~~~~i~~D~i~R~~r~-~G~~v~~~~g~D~~g 50 (312)
T cd00668 11 ANG-SLHLGHALTHIIADFIARYKRM-RGYEVPFLPGWDTHG 50 (312)
T ss_pred CCC-CcchhHHHHHHHHHHHHHHHHh-CCCCCCCCCccCCCC
Confidence 355 89999988743 3444544 35444333 345554
No 117
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=70.21 E-value=14 Score=36.84 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=40.4
Q ss_pred CceEEE-EecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCcc-ccccc----CCCHHHH-HHHHHHHHH
Q 015582 84 EKFYLY-TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAK 150 (404)
Q Consensus 84 ~~~~iy-tG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i-~~~~~~~~~ 150 (404)
+.+.+| ||--+-. .+||||+-+++ +.++|+. .|..|..+ |+|.. +.+.+ ..++.++ +.+..+...
T Consensus 7 ~~v~~Y~CGPTVYd-~~HiGhaR~~v~~D~l~R~L~~-~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~ 84 (300)
T PF01406_consen 7 GKVRMYVCGPTVYD-YAHIGHARTYVFFDVLRRYLEY-LGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFE 84 (300)
T ss_dssp TEEEEEEEEEBTTS---BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCCC-CCCCcceeeeeeHHHHHHHHHH-cCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 455565 4544444 89999977754 3445665 57766444 89977 33332 3666664 445566777
Q ss_pred HHHHcCCCC
Q 015582 151 DIIACGFDV 159 (404)
Q Consensus 151 ~ilA~G~dp 159 (404)
++.++|+.+
T Consensus 85 dm~~Lnv~~ 93 (300)
T PF01406_consen 85 DMKALNVLP 93 (300)
T ss_dssp HHHHTT---
T ss_pred HHHHcCCCC
Confidence 777888764
No 118
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=70.12 E-value=9.1 Score=38.05 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=35.7
Q ss_pred CCCCCcchhchHHHh----hHHHHHhhCCCeEEEE-ccCcccc-c----cc-CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 015582 94 PSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ-LTDDEKC-M----WK-NLSVEE-SQRLARENAKDIIACGFDVT 160 (404)
Q Consensus 94 PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~-I~D~~a~-~----~~-~~~~e~-i~~~~~~~~~~ilA~G~dp~ 160 (404)
|+| .+||||+.+.+ +.+++.. -|..|..+ =.|.+.. + .+ ..+..+ +.++..+..+++.++|+.++
T Consensus 11 ~ng-~~HiGH~~~~v~~Dv~~R~lr~-~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 11 PSG-ALHVGHVRTYTIGDIIARYKRM-QGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCC-CccccchHHHHHHHHHHHHHHH-cCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 455 89999988754 3344443 35554333 3444432 1 11 244444 34444566667778888664
No 119
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=69.91 E-value=4.7 Score=47.44 Aligned_cols=52 Identities=25% Similarity=0.160 Sum_probs=30.8
Q ss_pred ccccccCchhHHHHH-HHHHhHhCCCCc--ceeecccccCCCCCCCCCCCCCCCCeee
Q 015582 239 LIPCAIDQDPYFRMT-RDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIY 293 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~-rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~ 293 (404)
++.-|.||....-.+ .-+.--+....| .++.+.++..-+| +|||||.+| .|.
T Consensus 676 ~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG--~KMSKSlGN-vID 730 (1205)
T PTZ00427 676 FIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDG--KKMSKRLKN-YPD 730 (1205)
T ss_pred EEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCC--CCcccCCCC-CCC
Confidence 677899998643222 111111222344 3344667766665 899999998 654
No 120
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=69.58 E-value=3.8 Score=42.57 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=39.8
Q ss_pred EEEecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCcc-ccccc----CCCHHHH-HHHHHHHHHHHHHc
Q 015582 88 LYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAKDIIAC 155 (404)
Q Consensus 88 iytG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i-~~~~~~~~~~ilA~ 155 (404)
..||-=|-+ .+||||+.+++ +.+||+. .|..|..+ ++|.. +...+ ..+++++ .++..+...++-++
T Consensus 40 YvCGpTvY~-~~HIGhart~V~~Dvl~R~lr~-~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~L 117 (411)
T TIGR03447 40 YVCGITPYD-ATHLGHAATYLTFDLVNRVWRD-AGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEAL 117 (411)
T ss_pred EEeCCccCC-CcccccchHHHHHHHHHHHHHh-cCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 445666665 89999977653 3444544 56666554 44433 33221 3666554 44555666677777
Q ss_pred CCC
Q 015582 156 GFD 158 (404)
Q Consensus 156 G~d 158 (404)
|+.
T Consensus 118 ni~ 120 (411)
T TIGR03447 118 RVL 120 (411)
T ss_pred CCC
Confidence 753
No 121
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=69.48 E-value=16 Score=37.58 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=18.5
Q ss_pred eeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 267 LIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 267 ~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
...+.-+....| +|||||.+| .|.+.+
T Consensus 248 ~w~H~g~l~~~G--~KMSKSlGN-~i~~~e 274 (384)
T PRK12418 248 HYVHAGMIGLDG--EKMSKSRGN-LVFVSR 274 (384)
T ss_pred EEEECCEECCCC--CcccCcCCC-cCCHHH
Confidence 334444556665 899999998 777643
No 122
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=69.06 E-value=3.1 Score=47.73 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=29.9
Q ss_pred ccccccCchh-HHHHHHHHHhHhCCC---Cc-ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDP-YFRMTRDVAPRIGYH---KP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~-~~~l~rdla~r~~~~---kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||-+ |....+-. ....++ -| ..+++.++.. + |+|||||.+| .|++.+
T Consensus 576 ~~~~GkDii~~H~~~~i~~-~~a~~~~~~~Pk~i~~~G~vl~-~--G~KMSKSlGN-vI~p~d 633 (938)
T TIGR00395 576 WRISGKDLIPNHLTFYIFH-HVAIFPEKFWPRGIVVNGYVML-E--GKKMSKSKGN-VLTLEQ 633 (938)
T ss_pred EEEEeeccccchHHHHHHH-HHHcCCccccCcEEEEeceEEe-C--CccccCcCCC-CCCHHH
Confidence 5678999976 32222111 111211 23 3444555554 5 4899999998 887655
No 123
>PLN02224 methionine-tRNA ligase
Probab=68.23 E-value=3.7 Score=44.93 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=31.9
Q ss_pred cccccCchhHHHHH-HHHHhHhCCCCcceee-cccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 240 IPCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 240 vp~G~DQd~~~~l~-rdla~r~~~~kp~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
-.+|.|-.++.-+. --+.-..|.+.|..+. +.++ .+.| +|||||.+| .|++.+
T Consensus 325 ~~iGKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l-~~eG--~KMSKS~GN-~i~p~e 379 (616)
T PLN02224 325 HLIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFL-TKDG--MKMGKSLGN-TLEPFE 379 (616)
T ss_pred EEEeecccccHHHHHHHHHHHCCCCCCcEEEecccE-ecCC--ccccccCCc-cCCHHH
Confidence 35688877653332 1112234566664443 4454 4565 899999998 888765
No 124
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.78 E-value=13 Score=40.75 Aligned_cols=63 Identities=21% Similarity=0.320 Sum_probs=40.4
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEec-CCCCCCcchhchHHH---hhHHHHHhhCCCeEEEEccCcccc
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQLTDDEKC 131 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~-~PTg~~lHlGh~v~~---~~~~~lQ~~~~~~v~I~I~D~~a~ 131 (404)
+..+.+|..+.. | .-.++++ ||++=| -||| .||+||.... ..+.++|+.-|-.|+=-+| |.||
T Consensus 40 ~~~~~~~~~~~~-~------~d~sk~K-YiLsMFPYPSG-~LHiGHvRVYTIsD~laRf~rm~GynVihPMG-WDaF 106 (876)
T KOG0435|consen 40 KQYLKDGFPFSK-D------SDKSKKK-YILSMFPYPSG-ALHIGHVRVYTISDILARFYRMKGYNVIHPMG-WDAF 106 (876)
T ss_pred HHHHhcCCcccc-c------cccCCCc-eEEEecCCCCC-cccccceEEEEehHHHHHHHHhcCceeecCCc-cccc
Confidence 455677877764 1 1124344 888877 4887 8999996653 3566788776666554465 5555
No 125
>PLN02882 aminoacyl-tRNA ligase
Probab=67.49 E-value=4.7 Score=47.29 Aligned_cols=51 Identities=22% Similarity=0.100 Sum_probs=30.6
Q ss_pred ccccccCchhHHHHHHHHHhH---hCCCCcc-eeecccccCCCCCCCCCCCCCCCCeee
Q 015582 239 LIPCAIDQDPYFRMTRDVAPR---IGYHKPA-LIESSFFPALQGETGKMSASDPNSAIY 293 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r---~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~ 293 (404)
++.-|.||.... +.+-++.. +|.+.|. .+.+.++..=+| +|||||.+| .|.
T Consensus 570 ~i~eG~Dq~RgW-f~~ll~~s~~l~~~~pfk~VivhG~vlde~G--~KMSKSlGN-vId 624 (1159)
T PLN02882 570 FVAEGLDQTRGW-FYTLMVLSTALFDKPAFKNLICNGLVLAEDG--KKMSKSLKN-YPD 624 (1159)
T ss_pred EEEEecchhhhH-HHHHHHHHHHhcCCCCcceeEEccEEECCCC--CCcccCCCC-CCC
Confidence 677899998643 22222221 3444443 334666655555 899999998 664
No 126
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=67.16 E-value=4.3 Score=42.86 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=29.4
Q ss_pred cccccCch-hHHHHHHHHHhH-hCCCCcce-eecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 240 IPCAIDQD-PYFRMTRDVAPR-IGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 240 vp~G~DQd-~~~~l~rdla~r-~~~~kp~~-l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
-.+|.|.. ||++--+-.... .|.+.+.. +++-++ .+.| +|||||.+| .|.+.|
T Consensus 223 h~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~v-~~~g--~KMSKS~GN-~i~~~d 278 (465)
T TIGR00435 223 HGGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFL-MIDN--EKMSKSLGN-FFTVRD 278 (465)
T ss_pred eccccccccchHHHHHHHHHHhcCCCCCcEEEEeeEE-EecC--ccccccCCC-cCCHHH
Confidence 46777753 455433333232 34322222 344443 4665 899999998 777755
No 127
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=66.87 E-value=4.1 Score=47.03 Aligned_cols=52 Identities=25% Similarity=0.202 Sum_probs=32.6
Q ss_pred ccccccCchhHHHHHHHHHhHh--CCCCcc--eeecccccCCCCCCCCCCCCCCCCeeee
Q 015582 239 LIPCAIDQDPYFRMTRDVAPRI--GYHKPA--LIESSFFPALQGETGKMSASDPNSAIYV 294 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r~--~~~kp~--~l~~~~lp~L~G~~~KMSkS~~nsaI~L 294 (404)
+...|.||-.+ =.+|-++..+ ....|. .+.|.++..-+| .|||||.+| .|..
T Consensus 541 ~~~~G~Dii~~-W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G--~KMSKSlGN-vIdP 596 (995)
T PTZ00419 541 LLETGSDILFF-WVARMVMMSLHLTDKLPFKTVFLHAMVRDSQG--EKMSKSKGN-VIDP 596 (995)
T ss_pred EEEechhHHhH-HHHHHHHHHHHhcCCCChHHHhccceEECCCC--CCcccCCCC-cCCh
Confidence 56678887652 2334344433 224563 445777777775 899999998 6643
No 128
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=66.39 E-value=20 Score=38.13 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=42.4
Q ss_pred ceEEEEecCCC-CCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCc-----------cccccc----CCCHHH-H
Q 015582 85 KFYLYTGRGPS-SEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDD-----------EKCMWK----NLSVEE-S 141 (404)
Q Consensus 85 ~~~iytG~~PT-g~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~-----------~a~~~~----~~~~e~-i 141 (404)
.+.+|+ -+|| -+.+||||+.+++ +.+||+. .|..|..+ |+|. .+...+ ..++.+ +
T Consensus 21 ~v~mY~-CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~-~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a 98 (481)
T PRK14534 21 DVKVYA-CGPTVYNYAHIGNFRTYIFEDLLIKSLRL-LKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEIS 98 (481)
T ss_pred ceEEEe-CCCCCCCCCCccchhHHHHHHHHHHHHHH-cCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHH
Confidence 345554 4555 2479999977643 3445554 46555443 7776 233221 356655 4
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 015582 142 QRLARENAKDIIACGFDVT 160 (404)
Q Consensus 142 ~~~~~~~~~~ilA~G~dp~ 160 (404)
.++.....+++-++|+.+.
T Consensus 99 ~~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 99 RFFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 4455666777778887643
No 129
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=64.38 E-value=2.6 Score=41.86 Aligned_cols=50 Identities=24% Similarity=0.167 Sum_probs=22.3
Q ss_pred cccCc-hhHHHHHHHHHhHhCCCCcce---eecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 242 CAIDQ-DPYFRMTRDVAPRIGYHKPAL---IESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 242 ~G~DQ-d~~~~l~rdla~r~~~~kp~~---l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+|+|- -||.+=-+-.++.... +|.. +|+.+|. +. |+|||||.+| .|.+.|
T Consensus 212 GG~DL~FPHHENEiAqs~a~~g-~~~a~~W~H~g~l~-~~--g~KMSKSlgN-~~~i~d 265 (300)
T PF01406_consen 212 GGIDLIFPHHENEIAQSEAATG-KPFANYWMHNGHLN-VD--GEKMSKSLGN-FITIRD 265 (300)
T ss_dssp EEGGGTTTHHHHHHHHHHHHHS-S-SEEEEEEE--EE-ET--TCE--TTTT----BHHH
T ss_pred cccccCCCCccchHHHHHHhhC-chHHHHHHHHHHHh-hc--CccccccCCC-EEEHHH
Confidence 45552 2666555444444433 3322 2344432 34 4899999998 887755
No 130
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=63.53 E-value=20 Score=36.08 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=23.9
Q ss_pred eEEEEecC-CCCCCcchhchHHHh---hHHHHHhhCCCeEEEE-ccCccc
Q 015582 86 FYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEK 130 (404)
Q Consensus 86 ~~iytG~~-PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~-I~D~~a 130 (404)
|++.+|-= |+| .+||||+.+.. ++.++++..|..|..+ =.|.|+
T Consensus 3 f~i~~~pP~vnG-~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG 51 (338)
T cd00818 3 FVFHDGPPYANG-LPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHG 51 (338)
T ss_pred eEEecCCCCCCC-CchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCC
Confidence 44444432 345 89999988753 2333344456665444 345443
No 131
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.43 E-value=4.9 Score=43.37 Aligned_cols=53 Identities=23% Similarity=0.175 Sum_probs=30.0
Q ss_pred ccccCchhHHHHH-HHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 241 PCAIDQDPYFRMT-RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 241 p~G~DQd~~~~l~-rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
.+|.|=-+++-+- =-+.--.+.+.|..+.+.-.-.+.| +|||||.+| .||..+
T Consensus 293 fIGKDii~FHav~wPamL~~~~~~lP~~i~ahg~l~~~G--~KmSKSrG~-~V~~~~ 346 (558)
T COG0143 293 FIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFLTLEG--QKMSKSRGN-VVDPDE 346 (558)
T ss_pred EeccccCcchhhHHHHHHHhCCCCCCCEEEeeeeEEECC--ccccccCCc-EEeHHH
Confidence 4566644444333 1112223445666555433344554 899999998 999765
No 132
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=63.23 E-value=3.1 Score=47.15 Aligned_cols=14 Identities=43% Similarity=0.401 Sum_probs=11.5
Q ss_pred CCCCCCCCCeeeecC
Q 015582 282 KMSASDPNSAIYVTD 296 (404)
Q Consensus 282 KMSkS~~nsaI~L~D 296 (404)
|||||.+| .|.+.|
T Consensus 604 KMSKS~GN-~v~p~~ 617 (842)
T TIGR00396 604 KMSKSKGN-GIDPQE 617 (842)
T ss_pred hhhhcCCC-cCCHHH
Confidence 99999998 776644
No 133
>PLN02610 probable methionyl-tRNA synthetase
Probab=63.07 E-value=24 Score=39.96 Aligned_cols=76 Identities=8% Similarity=-0.018 Sum_probs=41.8
Q ss_pred CceEEEEecC-CCCCCcchhchHHH----hhHHHHHhhCCCeEEEEcc-Ccccc-cc-----cCCCHHHH-HHHHHHHHH
Q 015582 84 EKFYLYTGRG-PSSEALHLGHLVPF----MFTKYLQDAFKVPLVIQLT-DDEKC-MW-----KNLSVEES-QRLARENAK 150 (404)
Q Consensus 84 ~~~~iytG~~-PTg~~lHlGh~v~~----~~~~~lQ~~~~~~v~I~I~-D~~a~-~~-----~~~~~e~i-~~~~~~~~~ 150 (404)
++++|-|.+= |+| .+||||+.+. ....++++.-|..|.++.| |.|+. +. ...++.++ .++......
T Consensus 17 ~~~~ITt~~pY~Ng-~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~ 95 (801)
T PLN02610 17 RNILITSALPYVNN-VPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKE 95 (801)
T ss_pred CCEEEeCCCCCCCC-CcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3566666553 445 8999998852 2334455555777766655 44553 11 13555443 334444444
Q ss_pred HHHHcCCCCC
Q 015582 151 DIIACGFDVT 160 (404)
Q Consensus 151 ~ilA~G~dp~ 160 (404)
.+.++|++.+
T Consensus 96 ~~~~l~i~~D 105 (801)
T PLN02610 96 VYDWFDISFD 105 (801)
T ss_pred HHHHcCCccc
Confidence 5556666543
No 134
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=62.34 E-value=27 Score=36.32 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=18.4
Q ss_pred eeecccccCCCCCCCCCCCCCCCCeeeec
Q 015582 267 LIESSFFPALQGETGKMSASDPNSAIYVT 295 (404)
Q Consensus 267 ~l~~~~lp~L~G~~~KMSkS~~nsaI~L~ 295 (404)
...+..+....| +|||||.+| .|.+.
T Consensus 275 ~w~H~g~l~~~G--~KMSKSlGN-~i~~~ 300 (411)
T TIGR03447 275 HYVHAGMIGLDG--EKMSKSLGN-LVFVS 300 (411)
T ss_pred EEEECCEECcCC--CCccCcCCC-CCCHH
Confidence 344555556665 899999998 77764
No 135
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.91 E-value=23 Score=39.39 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=21.1
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 015582 352 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 386 (404)
Q Consensus 352 ~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~ 386 (404)
..++|. ..--.-+.++.+++..+.--.++++.-.
T Consensus 777 ~LrtGp-~~~FaDrvf~nemN~~i~~t~~aye~~~ 810 (1080)
T KOG0437|consen 777 SLRTGP-ASTFADRVFENEMNALIAKTERAYEDTL 810 (1080)
T ss_pred hhccCc-hhhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345552 2224567788888888877776666533
No 136
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=60.64 E-value=3.8 Score=41.62 Aligned_cols=62 Identities=21% Similarity=0.216 Sum_probs=39.9
Q ss_pred cccccccCchhHHHHHHHHHhHhCCCC--cceee--cccccCCCCCCC-CCCCCCCCCeeeecCCHHHHH
Q 015582 238 CLIPCAIDQDPYFRMTRDVAPRIGYHK--PALIE--SSFFPALQGETG-KMSASDPNSAIYVTDSAKAIK 302 (404)
Q Consensus 238 ~~vp~G~DQd~~~~l~rdla~r~~~~k--p~~l~--~~~lp~L~G~~~-KMSkS~~nsaI~L~D~~~~i~ 302 (404)
++-.+|.||..|+.-...+++.+|+.. ....| -.++.+-+| + |||+-.++ .|.|+|=-++..
T Consensus 241 ~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~g--k~~mstR~G~-~i~l~dllde~~ 307 (354)
T PF00750_consen 241 IIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDG--KVKMSTRKGN-VITLDDLLDEAV 307 (354)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTB--EESS-TTTTS-STBHHHHHHHHH
T ss_pred EEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCC--CccccCCCCC-ceEHHHHHHHHH
Confidence 444789999999999999999999721 12222 223333343 4 79999887 999977444443
No 137
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.16 E-value=11 Score=42.71 Aligned_cols=52 Identities=25% Similarity=0.235 Sum_probs=33.2
Q ss_pred ccccccCchhHHHHHHHHHhHh--CCCCcc--eeecccccCCCCCCCCCCCCCCCCeeee
Q 015582 239 LIPCAIDQDPYFRMTRDVAPRI--GYHKPA--LIESSFFPALQGETGKMSASDPNSAIYV 294 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r~--~~~kp~--~l~~~~lp~L~G~~~KMSkS~~nsaI~L 294 (404)
+.+.|-| -=++=.+|-+...+ ....|. ...+.++-.-+| .|||||.+| .|-.
T Consensus 481 llvtG~D-IIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G--~KMSKS~GN-vIDP 536 (877)
T COG0525 481 LLVTGHD-IIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQG--RKMSKSKGN-VIDP 536 (877)
T ss_pred cccccch-hhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCC--CCCcccCCC-cCCH
Confidence 5678988 55555666666543 334553 223556666665 999999999 6643
No 138
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=59.82 E-value=26 Score=35.91 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=24.8
Q ss_pred eEEEEecC-CCCCCcchhchHHHh---hHHHHHhhCCCeEEEEc-cCcc
Q 015582 86 FYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDE 129 (404)
Q Consensus 86 ~~iytG~~-PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I-~D~~ 129 (404)
+++.+|.= |+| .+||||+.+.. +..++++.-|..|.... .|.|
T Consensus 3 f~i~~~pPy~nG-~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~h 50 (382)
T cd00817 3 FVIDTPPPNVTG-SLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHA 50 (382)
T ss_pred EEEecCCCCCCC-cchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCC
Confidence 44444443 455 89999988754 33334555566665543 4544
No 139
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.31 E-value=34 Score=37.19 Aligned_cols=97 Identities=25% Similarity=0.348 Sum_probs=48.8
Q ss_pred EEEec--CCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHH-cCCCCCceE
Q 015582 88 LYTGR--GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA-CGFDVTKTF 163 (404)
Q Consensus 88 iytG~--~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA-~G~dp~kt~ 163 (404)
++|-| +|-| .|||||.-.+. +++ +.++.|.-.++- =|++- .....++.- +-|+++.+ +|+.|=|+
T Consensus 249 V~TRFPPEPNG-~LHIGHaKAIn-vNFgyAk~~~G~cyLR-fDDTN---PEkEee~yf----~sI~e~V~WLG~~P~kv- 317 (764)
T KOG1148|consen 249 VVTRFPPEPNG-ILHIGHAKAIN-VNFGYAKAHGGVCYLR-FDDTN---PEKEEEEYF----ESIKEMVAWLGFEPYKV- 317 (764)
T ss_pred eEEeCCCCCCc-eeeecchhhee-echhhhhhhCCeEEEe-cCCCC---cchhhHHHH----HHHHHHHHHhCCCceee-
Confidence 66666 5667 89999987773 555 555544444442 23221 011112222 33444444 59998544
Q ss_pred EEeCCccCccchHHHHHHHHh-------hcCHHHHHHhhCC
Q 015582 164 IFSDFDYVGGAFYKNMVKVAK-------CVTYNKVVGIFGF 197 (404)
Q Consensus 164 i~~~s~~~~~~~~~~~~~l~~-------~~t~~~~~~~~g~ 197 (404)
-.+||+.. .+|.....+-+ |.|..+++.+-|+
T Consensus 318 -TysSDyFd-qLy~~av~LIrkG~AYVcHqt~eEik~~rg~ 356 (764)
T KOG1148|consen 318 -TYSSDYFD-QLYELAVELIRKGKAYVCHQTAEEIKERRGF 356 (764)
T ss_pred -ecchhHHH-HHHHHHHHHHhcCceeEEeccHHHHHhhcCC
Confidence 34566653 33433333222 3455666644333
No 140
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.91 E-value=80 Score=35.85 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=16.0
Q ss_pred cccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 270 SSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 270 ~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
..++.+-. |+|||||.+| .|-+++
T Consensus 569 qGmVl~~~--g~KMSKSKgN-~v~p~~ 592 (814)
T COG0495 569 QGMVLGEE--GEKMSKSKGN-VVDPEE 592 (814)
T ss_pred cceEEecC--CCccccccCC-CCCHHH
Confidence 44444444 4899999998 665544
No 141
>PLN02563 aminoacyl-tRNA ligase
Probab=56.65 E-value=30 Score=39.97 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=44.1
Q ss_pred CCceEEEEecCCCCCC-cchhchHHHh---hHHHHHhhCCCeEEEEccCcc-cc-ccc-----CCC-HHHHHHHHHHHHH
Q 015582 83 GEKFYLYTGRGPSSEA-LHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE-KC-MWK-----NLS-VEESQRLARENAK 150 (404)
Q Consensus 83 ~~~~~iytG~~PTg~~-lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~D~~-a~-~~~-----~~~-~e~i~~~~~~~~~ 150 (404)
+.++++.+|+=...+. ||+||+.... +..++++.-|..|...+|=++ +. +.. ..+ .+-+.++.....+
T Consensus 109 k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~ 188 (963)
T PLN02563 109 KPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRS 188 (963)
T ss_pred CCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHH
Confidence 4568888888322345 9999988753 334456655777766666443 43 111 122 2334455556666
Q ss_pred HHHHcCCC
Q 015582 151 DIIACGFD 158 (404)
Q Consensus 151 ~ilA~G~d 158 (404)
++..+|+.
T Consensus 189 q~~~lG~s 196 (963)
T PLN02563 189 QLKSLGFS 196 (963)
T ss_pred HHHHhCcE
Confidence 77778864
No 142
>PLN02610 probable methionyl-tRNA synthetase
Probab=56.01 E-value=6.8 Score=44.21 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=31.2
Q ss_pred ccccccCchhHHHHH-HHHHhHhC--CCCcceee-cccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMT-RDVAPRIG--YHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~-rdla~r~~--~~kp~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+-.+|.|--.++-+. =-+.--.+ ++.|..+. +.++ .+.| +|||||.+| .||..+
T Consensus 304 ~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l-~~eG--~KMSKS~GN-vV~p~~ 361 (801)
T PLN02610 304 YQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYL-NYEG--GKFSKSKGV-GVFGND 361 (801)
T ss_pred EEEEeeecchhHHHHHHHHHHhCCCCcCCCCEEEeccCE-ecCC--ceecCcCCc-ccCHHH
Confidence 345788866655443 11111233 33565554 4443 3454 899999998 888755
No 143
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=54.49 E-value=42 Score=37.22 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=43.8
Q ss_pred CceEEEEecCCC-CCCcchhchHHHh---h-HHHHHhhCCCeEEEE--ccCcc-ccccc----CCCHHHH-HHHHHHHHH
Q 015582 84 EKFYLYTGRGPS-SEALHLGHLVPFM---F-TKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAK 150 (404)
Q Consensus 84 ~~~~iytG~~PT-g~~lHlGh~v~~~---~-~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i-~~~~~~~~~ 150 (404)
+.+.+|+ -+|| -+.+||||+.+++ . .++|+. .|..|..+ ++|.. +...+ ..++.++ .++..+...
T Consensus 247 ~~V~mYv-CGPTVYd~~HIGHaRt~V~~DVL~R~Lr~-~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~ 324 (699)
T PRK14535 247 ENVRMYV-CGMTVYDYCHLGHARVMVVFDMIARWLRE-CGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHE 324 (699)
T ss_pred CceEEEe-cCCcCCCCCcccchhHHHHHHHHHHHHHH-cCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3455554 4555 2489999977653 3 444544 56666554 56544 33222 3666554 445566777
Q ss_pred HHHHcCCCCC
Q 015582 151 DIIACGFDVT 160 (404)
Q Consensus 151 ~ilA~G~dp~ 160 (404)
++.++|+.+.
T Consensus 325 d~~~LnI~~p 334 (699)
T PRK14535 325 DADALGVLRP 334 (699)
T ss_pred HHHHcCCCCC
Confidence 7888888654
No 144
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=53.70 E-value=6.6 Score=44.31 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=27.1
Q ss_pred ccccccCch-hHHHHHHHHHhH---hC---CCCc--ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQD-PYFRMTRDVAPR---IG---YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd-~~~~l~rdla~r---~~---~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||. -|+-.+|-.... .+ ...| ..+++.++ |||||.+| .|...|
T Consensus 526 ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v--------KMSKS~GN-~i~p~~ 583 (805)
T PRK00390 526 QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV--------KMSKSKGN-VVDPDD 583 (805)
T ss_pred EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE--------EeCCCCCC-CCCHHH
Confidence 567899984 333333322211 12 2344 23345555 99999998 666544
No 145
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=52.66 E-value=58 Score=29.83 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=40.3
Q ss_pred EEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCccc-cc-ccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 015582 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK-CM-WKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (404)
Q Consensus 88 iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a-~~-~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~ 165 (404)
+|.|.- +.+|+||+..+. .-++. ++ .++|+|+.... .. .+..+.++-.++++..+. ..|++.+++.|.
T Consensus 3 l~~GrF---~P~H~GHl~~i~--~a~~~-~~-~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~---~~~~~~~rv~i~ 72 (181)
T cd02168 3 VYIGRF---QPFHNGHLAVVL--IALEK-AK-KVIILIGSARTARNIKNPWTSEEREVMIEAALS---DAGADLARVHFR 72 (181)
T ss_pred EEeecc---CCCCHHHHHHHH--HHHHH-CC-eEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHh---ccCCCcceEEEE
Confidence 455543 458999986653 23443 45 67776765432 22 234677777655543332 358888888666
Q ss_pred e
Q 015582 166 S 166 (404)
Q Consensus 166 ~ 166 (404)
.
T Consensus 73 p 73 (181)
T cd02168 73 P 73 (181)
T ss_pred e
Confidence 4
No 146
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=52.56 E-value=46 Score=36.28 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=25.4
Q ss_pred hCCceEEEEecC-CCCCCcchhchHHHh---hHHHHHhhCCCeEEEEcc
Q 015582 82 KGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (404)
Q Consensus 82 ~~~~~~iytG~~-PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~ 126 (404)
++++|++..|.= +|| .||+||.+... +..++++.-|..|....|
T Consensus 21 ~~~~f~i~~~PPy~nG-~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G 68 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANG-DLHIGHALNKTIKDIIARYKRMQGYNVLFPPG 68 (601)
T ss_dssp TSGEEEEEE---BTSS-S-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCCcEEEEeCCCCCCC-cccHHHHHHHHHHHHHHHHHHhCCcEeCCCCC
Confidence 446677777653 355 89999988864 233355555766666533
No 147
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=51.06 E-value=9.7 Score=40.52 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=18.2
Q ss_pred eecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 268 IESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 268 l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
..+.-+-.+.| +|||||.+| .|.+.|
T Consensus 267 w~h~g~l~~~g--~KMSKSlGN-~itl~d 292 (490)
T PRK14536 267 WLHHEFLLMNK--GKMSKSAGQ-FLTLSS 292 (490)
T ss_pred EEEcCEEeecC--ccccccCCC-cccHHH
Confidence 33444445665 899999998 888754
No 148
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=49.23 E-value=1.7e+02 Score=28.98 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=32.8
Q ss_pred ccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 241 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 241 p~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
++=.| .|-+.+.|.+++-++++ ..++-.+++..-+| =-||+= .+||+.
T Consensus 148 FGeKD-~QQl~vIr~mV~DL~~~-VeIv~vptVRe~DG--LA~SSR----N~YLs~ 195 (285)
T COG0414 148 FGEKD-YQQLAVIRRMVADLNLP-VEIVGVPTVREEDG--LALSSR----NVYLSA 195 (285)
T ss_pred eccch-HHHHHHHHHHHHHcCCC-eEEEecceeEcCCc--cchhhc----cccCCH
Confidence 34445 77788889999999973 34445788888887 456643 467765
No 149
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=49.18 E-value=8.5 Score=42.40 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=17.6
Q ss_pred eecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 268 IESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 268 l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+|+.+| .+.| .|||||.+| .|.+.|
T Consensus 304 ~H~G~L-~i~G--~KMSKSLGN-fItp~d 328 (651)
T PTZ00399 304 LHSGHL-HIKG--LKMSKSLKN-FITIRQ 328 (651)
T ss_pred EEEEEE-Eecc--chhhhcCCC-cccHHH
Confidence 344553 3555 899999998 887765
No 150
>PLN02946 cysteine-tRNA ligase
Probab=48.76 E-value=6.7 Score=42.37 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=17.8
Q ss_pred eecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 268 IESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 268 l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+|+-+|. +.| +|||||.+| .|.+.|
T Consensus 312 ~H~G~v~-~~G--~KMSKSlGN-~itl~d 336 (557)
T PLN02946 312 IHNGFVT-VDS--EKMSKSLGN-FFTIRQ 336 (557)
T ss_pred eEeeEEE-eCC--CCcCCcCCC-cCCHHH
Confidence 4566665 665 899999998 666543
No 151
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.02 E-value=16 Score=40.52 Aligned_cols=57 Identities=25% Similarity=0.298 Sum_probs=34.5
Q ss_pred ccccccCch-hHHHHH--HHHHhHhCCCCc--ceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHH
Q 015582 239 LIPCAIDQD-PYFRMT--RDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 304 (404)
Q Consensus 239 ~vp~G~DQd-~~~~l~--rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~K 304 (404)
+..=|.||. .||.-. --+|-+-. .| +.+.+.|.-.=.| .|||||.+| .| +|+.|-+.
T Consensus 569 v~LEG~DQ~rGWFQSsLLTsvA~q~k--APYk~vivHGFtlDE~G--~KMSKSlGN-Vi----dP~~v~~G 630 (937)
T KOG0433|consen 569 VYLEGVDQFRGWFQSSLLTSVAVQNK--APYKKVIVHGFTLDENG--NKMSKSLGN-VV----DPTMVTDG 630 (937)
T ss_pred eEEecchhcchHHHHHHHHHHHHhcc--CCchheeeeeeEecCCc--cchhhcccC-cC----CHHHHhCC
Confidence 445688985 576533 44554422 33 3445666655554 899999999 54 46655544
No 152
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=47.44 E-value=24 Score=39.77 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=35.7
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceEEEEec-CCCCCCcchhchHHHh---hHHHHHhhCCCeEEEEccCcc
Q 015582 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (404)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~-~PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (404)
...+.|+|....+ .+++++++.+|. =|+| .+||||+.... +..++++.-|..|....|=++
T Consensus 22 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~ 86 (800)
T PRK13208 22 IWEEEGTYKFDPD--------ERKPVYSIDTPPPTVSG-SLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDD 86 (800)
T ss_pred HHHHCCCcccccc--------cCCCcEEEecCcCCCCC-CccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCC
Confidence 4556677654322 123567777643 4566 89999988754 233345555766666555443
No 153
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=46.16 E-value=8 Score=42.67 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=17.8
Q ss_pred eecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 268 IESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 268 l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+|+.+|. +.| +|||||.+| .|.+.|
T Consensus 497 mHnG~V~-vdG--eKMSKSLGN-~it~~d 521 (699)
T PRK14535 497 LHNGFIR-VDG--EKMSKSLGN-FFTIRE 521 (699)
T ss_pred EECCeEe-eCC--CccCCCCCC-cCCHHH
Confidence 4555655 665 899999998 666644
No 154
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=45.03 E-value=42 Score=38.19 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=37.6
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceEEEEecC-CCCCCcchhchHHHh---hHHHHHhhCCCeEEEEccCcc
Q 015582 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (404)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~-PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (404)
.+.+.|+|....+ ..+++|++++|.= +|| .||+||.+... +..++++.-|..|....|=+|
T Consensus 17 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 81 (861)
T TIGR00422 17 KWEKSGFFKPDGN--------SNKPPFCIDIPPPNVTG-SLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDH 81 (861)
T ss_pred HHHHCCCcccCcc--------cCCCeEEEEeCCCCCCC-CCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCc
Confidence 5566787765432 2345688888653 456 89999988753 233355555666665555444
No 155
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.26 E-value=24 Score=37.56 Aligned_cols=47 Identities=32% Similarity=0.593 Sum_probs=32.8
Q ss_pred hCCceEEEEecCCC-CCCcchhc---hHHHhhH-HHHHhhCCCeEEEE--ccCcc
Q 015582 82 KGEKFYLYTGRGPS-SEALHLGH---LVPFMFT-KYLQDAFKVPLVIQ--LTDDE 129 (404)
Q Consensus 82 ~~~~~~iytG~~PT-g~~lHlGh---~v~~~~~-~~lQ~~~~~~v~I~--I~D~~ 129 (404)
.++.+..|+ -+|| -++-|+|| |+.+.++ +.|++.+|..|..+ |+|..
T Consensus 52 ~~~~v~wY~-CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVD 105 (586)
T KOG2007|consen 52 NGNKVTWYI-CGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVD 105 (586)
T ss_pred CCCeEEEEE-ecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchh
Confidence 344566665 4777 36899999 6666544 45899999887665 78865
No 156
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=40.96 E-value=14 Score=39.21 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=17.1
Q ss_pred ecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 269 ESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 269 ~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
|+-++ .+.| +|||||.+| .|++.|
T Consensus 269 H~g~l-~~~g--~KMSKSlGN-~i~l~d 292 (481)
T PRK14534 269 HGEFL-IMEY--EKMSKSNNN-FITIKD 292 (481)
T ss_pred EecEE-EecC--ceecccCCC-cccHHH
Confidence 34444 4565 899999998 888854
No 157
>PLN02943 aminoacyl-tRNA ligase
Probab=37.88 E-value=44 Score=38.61 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=37.5
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceEEEEe-cCCCCCCcchhchHHHh---hHHHHHhhCCCeEEEEccCcc
Q 015582 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (404)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG-~~PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (404)
.+.+.|+|....+ .++++|.+.+| =-+|| .||+||.+... ++.++++.-|..|....|=+|
T Consensus 72 ~W~~~~~f~~~~~--------~~~~~f~i~~pPP~~tG-~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 136 (958)
T PLN02943 72 WWESQGYFKPNFD--------RGGDPFVIPMPPPNVTG-SLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDH 136 (958)
T ss_pred HHHHCCCcccCcc--------cCCCCEEEecCCCCCCC-chhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCc
Confidence 5556777765432 23466777776 55687 89999988653 233344445666665555444
No 158
>PLN02381 valyl-tRNA synthetase
Probab=37.57 E-value=48 Score=38.82 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=38.2
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecC-CCCCCcchhchHHHh---hHHHHHhhCCCeEEEEccCcc
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~-PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (404)
..+.+.|+|....+ ..+++|++.+|.= +|| .||+||..... +..++++.-|..|....|=+|
T Consensus 111 ~~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~ 176 (1066)
T PLN02381 111 AWWEKSGYFGADAK--------SSKPPFVIVLPPPNVTG-ALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDH 176 (1066)
T ss_pred HHHHHCCCccCCcc--------CCCCcEEEEeCCCCCCC-CccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCC
Confidence 35667787765321 2345688888764 455 89999988753 333455555766666555444
No 159
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=33.67 E-value=3.4e+02 Score=24.11 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=32.8
Q ss_pred CCcchhchHHHhhHHHHHhhCCCeEEEEccC-cccccc-cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCcc
Q 015582 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTD-DEKCMW-KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 170 (404)
Q Consensus 97 ~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D-~~a~~~-~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~ 170 (404)
+.+|+||+..+. ..++. ++ .++|+|+. ...... ...+.++-.++++..+ ...|++-+++.+....++
T Consensus 9 dP~H~GHl~~i~--~a~~~-~d-~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~~~---~~~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 9 QPFHLGHLKVIK--WILEE-VD-ELIIGIGSAQESHTLENPFTAGERVLMIRRAL---EEEGIDLSRYYIIPVPDI 77 (163)
T ss_pred CCCCHHHHHHHH--HHHHH-CC-EEEEEecCCCCCCCCCCCCCHHHHHHHHHHHH---HhcCCCcCeEEEEecCCC
Confidence 459999976553 22333 33 45555533 323222 2366665443332222 223566667766654433
No 160
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=33.40 E-value=3e+02 Score=27.23 Aligned_cols=115 Identities=16% Similarity=0.222 Sum_probs=73.9
Q ss_pred CCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhC
Q 015582 38 GCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAF 117 (404)
Q Consensus 38 g~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~ 117 (404)
|.-+=+++....|+.|++. .|. + |=.--.|.-++.++.+.++ .+|.++.|+=||. ..|=+---.+ +..+++. .
T Consensus 57 GtCKSa~~~~sDLe~l~~~-t~~-I-R~Y~sDCn~le~v~pAa~~-~g~kv~lGiw~td-d~~~~~~~ti-l~ay~~~-~ 129 (305)
T COG5309 57 GTCKSADQVASDLELLASY-THS-I-RTYGSDCNTLENVLPAAEA-SGFKVFLGIWPTD-DIHDAVEKTI-LSAYLPY-N 129 (305)
T ss_pred CCCcCHHHHHhHHHHhccC-Cce-E-EEeeccchhhhhhHHHHHh-cCceEEEEEeecc-chhhhHHHHH-HHHHhcc-C
Confidence 5555566667777777765 231 1 2222346668888888776 5699999999995 7885543222 3445554 3
Q ss_pred CCe--EEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 015582 118 KVP--LVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVT 160 (404)
Q Consensus 118 ~~~--v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~ 160 (404)
+-+ ..|.+| -|+.-++.++.+++.+++......+.+.|++..
T Consensus 130 ~~d~v~~v~VG-nEal~r~~~tasql~~~I~~vrsav~~agy~gp 173 (305)
T COG5309 130 GWDDVTTVTVG-NEALNRNDLTASQLIEYIDDVRSAVKEAGYDGP 173 (305)
T ss_pred CCCceEEEEec-hhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 333 344445 677766679999999888666555667898753
No 161
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=32.88 E-value=44 Score=36.17 Aligned_cols=42 Identities=19% Similarity=0.406 Sum_probs=27.4
Q ss_pred EEEEecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEE--EccCccc
Q 015582 87 YLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVI--QLTDDEK 130 (404)
Q Consensus 87 ~iytG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I--~I~D~~a 130 (404)
.=|++-=|++ .|||||+-..+ +.++|. ..|..|.= .|+||=.
T Consensus 116 ve~~spn~~~-~~hiGh~r~~~~gd~l~r~~~-~~g~~v~r~~yinD~G~ 163 (566)
T TIGR00456 116 IEFSSANPAG-PLHIGHLRNAIIGDSLARILE-FLGYDVIREYYVNDWGR 163 (566)
T ss_pred EEecCCCCCC-CCchhhhHHHHHHHHHHHHHH-HCCCCeeEEeeecchHH
Confidence 3477888887 79999987765 344454 44555543 2788653
No 162
>PLN02660 pantoate--beta-alanine ligase
Probab=31.85 E-value=4e+02 Score=26.43 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=36.2
Q ss_pred cccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHh
Q 015582 242 CAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 305 (404)
Q Consensus 242 ~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI 305 (404)
+=.| .|-+.+.|.+++.++++ ..++-.+++.--+| =-||+= ..||++...+....|
T Consensus 153 GeKD-~QQl~vIrrmV~dL~~~-v~I~~~ptvRe~dG--LA~SSR----N~yLs~~eR~~A~~l 208 (284)
T PLN02660 153 GKKD-YQQWRVIRRMVRDLDFD-IEVVGSPIVREADG--LAMSSR----NVRLSAEEREKALSI 208 (284)
T ss_pred cchH-HHHHHHHHHHHHHcCCC-ceEEeeCceECCCC--Ceeccc----cccCCHHHHHHHHHH
Confidence 3345 77788889999999984 34445788888776 467754 356766443333333
No 163
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=31.60 E-value=73 Score=33.50 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=27.2
Q ss_pred EEEEecCCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCc
Q 015582 87 YLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDD 128 (404)
Q Consensus 87 ~iytG~~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~ 128 (404)
++=--=-||| -+|||-+-..+ -+| +.+..|..+++-|-|.
T Consensus 35 RvRFAPSPTG-fLHlGgLRTAL-fNYLfArk~gGkFiLRiEDT 75 (524)
T KOG1149|consen 35 RVRFAPSPTG-FLHLGGLRTAL-FNYLFARKKGGKFILRIEDT 75 (524)
T ss_pred EEeecCCCCc-ceehhhHHHHH-HHHHHHHhcCCeEEEEeccc
Confidence 3333334667 89999999885 455 5666777777777663
No 164
>PLN02843 isoleucyl-tRNA synthetase
Probab=30.91 E-value=1.1e+02 Score=35.41 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=33.2
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceEEEEecC-CCCCCcchhchHHHh---hHHHHHhhCCCeEEEEcc
Q 015582 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (404)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~-PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~ 126 (404)
...+.|++....+. .++++|++..|.= ++| .+||||.+... +..++++.-|..+....|
T Consensus 15 ~W~~~~~y~~~~~~-------~~~~~f~i~~~PPy~nG-~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG 77 (974)
T PLN02843 15 LWEENQVYKRVSDR-------NNGESFTLHDGPPYANG-DLHIGHALNKILKDFINRYQLLQGKKVHYVPG 77 (974)
T ss_pred HHHHCCCccccccc-------cCCCCEEEeCCCCCCCC-CcchhHHHHHHHHHHHHHHHHhcCCccccCCc
Confidence 34455666543321 2356777777753 456 89999988754 223344444555544433
No 165
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.44 E-value=38 Score=38.53 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=23.1
Q ss_pred CCCCCcchhchHHHh---hHHHHHhhCCCeEEEEccCccc
Q 015582 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDEK 130 (404)
Q Consensus 94 PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~D~~a 130 (404)
+|| +||+||.+..- ++.++++.-|..+..+-|=+||
T Consensus 44 VTG-~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhA 82 (877)
T COG0525 44 VTG-SLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHA 82 (877)
T ss_pred CCC-cccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCC
Confidence 377 99999987643 3334455557777666565554
No 166
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=30.25 E-value=45 Score=33.30 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=38.5
Q ss_pred cccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCe
Q 015582 238 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 291 (404)
Q Consensus 238 ~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsa 291 (404)
+.|.-|.|.-..--.-+-|.+.+|.+.|...|.+.+...+| +|+||++...+
T Consensus 201 THViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~~g--~kLSKR~~~~~ 252 (314)
T PF00749_consen 201 THVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNEDG--KKLSKRKGAKS 252 (314)
T ss_dssp SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEETTS--SBSSTTCSHHB
T ss_pred CeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecCCC--cEechhhcccc
Confidence 35677887655544447778889998898888888888876 89999977534
No 167
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=29.27 E-value=67 Score=36.71 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=35.8
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceEEEEecC-CCCCCcchhchHHHh---hHHHHHhhCCCeEEEEccCcc
Q 015582 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (404)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~-PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (404)
...+.|+|....+ ++++|.+.+|.= +|| .||+||.+... +..++++.-|..|...-|=+|
T Consensus 21 ~W~~~~~f~~~~~---------~~~~f~i~~ppP~~~G-~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 84 (874)
T PRK05729 21 KWEEKGYFKPDDN---------SKKPFSIVIPPPNVTG-SLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDH 84 (874)
T ss_pred HHHHCCCcccCcC---------CCCCEEEecCCCCCCC-cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCc
Confidence 5566787765331 345666666542 456 89999988753 233345555666655545444
No 168
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=29.26 E-value=60 Score=32.87 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=24.2
Q ss_pred EEecCCCCCCcchhchHHHhh---HHHHHhhCCCeEEEE--ccCccc
Q 015582 89 YTGRGPSSEALHLGHLVPFMF---TKYLQDAFKVPLVIQ--LTDDEK 130 (404)
Q Consensus 89 ytG~~PTg~~lHlGh~v~~~~---~~~lQ~~~~~~v~I~--I~D~~a 130 (404)
|+.-=|++ .||+||+-..++ +..+-++.|..|.-. |+|+=.
T Consensus 26 ~sSpNp~k-plHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~ 71 (354)
T PF00750_consen 26 FSSPNPTK-PLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGT 71 (354)
T ss_dssp E---BTTS-S-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSH
T ss_pred ecCCCCCC-CCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCH
Confidence 88888998 799999877642 223334457666544 788753
No 169
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=29.08 E-value=49 Score=38.69 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=38.0
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecC-CCCCCcchhchHHHh---hHHHHHhhCCCeEEEEccCcc
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~-PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (404)
..+.+.|+|..... + ..+.+|+++.|.= +|| .||+||.+... ++.++++.-|..|....|-++
T Consensus 30 ~~W~~~~~f~~~~~-~------~~~~~f~i~~pPP~~nG-~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~ 96 (1052)
T PRK14900 30 PFWQERGYFHGDEH-D------RTRPPFSIVLPPPNVTG-SLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDH 96 (1052)
T ss_pred HHHHHCCCccCCcc-c------CCCCCEEEecCCCCCCC-cchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCc
Confidence 35566777755211 0 2345688888764 455 89999988753 333455555766666555544
No 170
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=27.80 E-value=3.7e+02 Score=25.12 Aligned_cols=58 Identities=17% Similarity=0.326 Sum_probs=35.1
Q ss_pred ceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcc-cc-cccCCCHHHHHHHHHHHH
Q 015582 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KC-MWKNLSVEESQRLARENA 149 (404)
Q Consensus 85 ~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~-a~-~~~~~~~e~i~~~~~~~~ 149 (404)
...+|.|+- ..+|+||+-.+ ..-+.+ .+ .++|.||--. +. ..++.|+.+-....+..+
T Consensus 5 d~~v~iGRF---QPfH~GHl~~I--~~al~~-~d-evII~IGSA~~s~t~~NPFTa~ER~~MI~~aL 64 (196)
T PRK13793 5 DYLVFIGRF---QPFHLAHMQTI--EIALQQ-SR-YVILALGSAQMERNIKNPFLAIEREQMILSNF 64 (196)
T ss_pred eEEEEEecC---CCCcHHHHHHH--HHHHHh-CC-EEEEEEccCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 356888875 45899997555 233554 34 6777776533 22 334588877665554444
No 171
>PRK07217 replication factor A; Reviewed
Probab=27.01 E-value=1.9e+02 Score=29.08 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhc-CCCC--HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHh
Q 015582 344 AELEHIKKEYGA-GGML--TGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMA 395 (404)
Q Consensus 344 ~eleei~~~~~~-G~~~--~~~lK~~La~~i~~~l~~~r~~~~~~~~~~~~~~~~ 395 (404)
+..++|.++|.. | +. ..++++.|-..|++|=-|..+++..+++.++++|=-
T Consensus 6 ~~aeei~~~~s~lg-vdv~~~~ie~~L~~Lv~ey~VP~~EA~rSv~~~~~~k~g~ 59 (311)
T PRK07217 6 QHAEEIHEQFSDLG-VDVSVEDVEERLDTLVTEFKVPEDEARRSVTNYYLKEAGI 59 (311)
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 346788878876 5 44 889999999999999999999999999989899843
No 172
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.77 E-value=66 Score=35.07 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=27.3
Q ss_pred EEecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCccc
Q 015582 89 YTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDEK 130 (404)
Q Consensus 89 ytG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~~a 130 (404)
|+.--||| .|||||+-..+ +.+-|.- .|..|+-. |+||-.
T Consensus 123 ~sSaNptk-plHiGHlR~aiiGDsLaril~~-~Gy~V~r~~yvnD~G~ 168 (577)
T COG0018 123 YSSANPTG-PLHIGHLRNAIIGDSLARILEF-LGYDVTRENYVNDWGT 168 (577)
T ss_pred EeCCCCCC-CcccchhhhhHHHHHHHHHHHH-cCCCeeEEeeECcHHH
Confidence 78888998 79999987764 2333444 45555443 788764
No 173
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=26.20 E-value=66 Score=37.37 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=38.0
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceEEEEecC-CCCCCcchhchHHHh---hHHHHHhhCCCeEEEEccCcc
Q 015582 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (404)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~-PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (404)
.+.+.|+|....+.+. -..+++|++.+|.= ||| .||+||.+... ++.++++.-|..|....|=++
T Consensus 40 ~W~~~~~f~~~~~~~~----~~~~~~f~i~~ppP~~~G-~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~ 108 (995)
T PTZ00419 40 WWEKSGFFKPAEDAKS----LNSGKKFVIVLPPPNVTG-YLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDH 108 (995)
T ss_pred HHHHCCCcccCccccc----cCCCCeEEEEeCCCCCCC-CCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCC
Confidence 5566777765321110 02345577777663 456 89999988753 333455555777766655444
No 174
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.04 E-value=85 Score=34.99 Aligned_cols=75 Identities=25% Similarity=0.288 Sum_probs=44.0
Q ss_pred CCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCCCcc---eeeccccc
Q 015582 198 TGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA---LIESSFFP 274 (404)
Q Consensus 198 ~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~---~l~~~~lp 274 (404)
+++++++...||.=- -- .|-..|| + ..|.=|+||..-.=.|--+....-+.+|. .+-+.++.
T Consensus 531 SGSMPYAq~HyPFen-----k~-~fe~~fP------a---dFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVL 595 (1070)
T KOG0434|consen 531 SGSMPYAQRHYPFEN-----KE-EFEENFP------A---DFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVL 595 (1070)
T ss_pred cCCCcchhhcCCccc-----hH-HHhhcCc------h---HhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEE
Confidence 467888888888654 21 1222222 3 36778999975433443343332233443 23466677
Q ss_pred CCCCCCCCCCCCCCC
Q 015582 275 ALQGETGKMSASDPN 289 (404)
Q Consensus 275 ~L~G~~~KMSkS~~n 289 (404)
+-+| +||||+..|
T Consensus 596 AeDG--~KMSKrlkN 608 (1070)
T KOG0434|consen 596 AEDG--KKMSKRLKN 608 (1070)
T ss_pred eccc--HHHhhhhhc
Confidence 7776 999999876
No 175
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=22.95 E-value=3.3e+02 Score=27.40 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=39.8
Q ss_pred CceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCc-ccc-cccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 015582 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD-EKC-MWKNLSVEESQRLARENAKDIIACGFDVTK 161 (404)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~-~a~-~~~~~~~e~i~~~~~~~~~~ilA~G~dp~k 161 (404)
..+.+|.|.- +.+|+||+..+. .-++. ++ .++|+|+.. ... ..+..+.++-.+.+ +..++ +++..+
T Consensus 6 ~~~~~~~G~F---~P~H~GHl~~i~--~a~~~-~d-~l~v~i~s~~~~~~~~~~~~~~~R~~mi----~~~~~-~~~~~r 73 (340)
T PRK05379 6 YDYLVFIGRF---QPFHNGHLAVIR--EALSR-AK-KVIVLIGSADLARSIKNPFSFEERAQMI----RAALA-GIDLAR 73 (340)
T ss_pred ceEEEEeecc---CCCCHHHHHHHH--HHHHH-CC-EEEEEEccCCCCCcCCCCCCHHHHHHHH----HHHhh-cCCCce
Confidence 3456777755 468999976653 22333 33 577777632 222 22346777766444 33333 676667
Q ss_pred eEEEe
Q 015582 162 TFIFS 166 (404)
Q Consensus 162 t~i~~ 166 (404)
+.|..
T Consensus 74 ~~~~p 78 (340)
T PRK05379 74 VTIRP 78 (340)
T ss_pred EEEEE
Confidence 75553
No 176
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=22.30 E-value=1.1e+02 Score=22.19 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=16.6
Q ss_pred CCcchhchHHHhhHHHHHhhCCCeEEEEccC
Q 015582 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127 (404)
Q Consensus 97 ~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D 127 (404)
+.+|.||.--+ ++..+.++ .+++.|+-
T Consensus 9 dp~H~GH~~~l---~~a~~~~~-~~vv~i~~ 35 (66)
T TIGR00125 9 DPFHLGHLDLL---ERAKELFD-ELIVGVGS 35 (66)
T ss_pred CCCCHHHHHHH---HHHHHhCC-EEEEEECc
Confidence 56999996655 34444445 56665654
No 177
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.60 E-value=1.5e+02 Score=30.36 Aligned_cols=63 Identities=24% Similarity=0.405 Sum_probs=38.7
Q ss_pred cCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHH-HHHHHcCCCCCc---eEEEeC
Q 015582 92 RGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENA-KDIIACGFDVTK---TFIFSD 167 (404)
Q Consensus 92 ~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~-~~ilA~G~dp~k---t~i~~~ 167 (404)
++|||. |- .++..-|.+..++|+.| ||-+..+.-.+=-|+++ ..+ +.+.||.+|.++ -+||.+
T Consensus 103 iGPTGs----GK---TlLAqTLAk~LnVPFai--ADATtLTEAGYVGEDVE----NillkLlqaadydV~rAerGIIyID 169 (408)
T COG1219 103 IGPTGS----GK---TLLAQTLAKILNVPFAI--ADATTLTEAGYVGEDVE----NILLKLLQAADYDVERAERGIIYID 169 (408)
T ss_pred ECCCCC----cH---HHHHHHHHHHhCCCeee--ccccchhhccccchhHH----HHHHHHHHHcccCHHHHhCCeEEEe
Confidence 478872 22 22344466667999986 99888775444445554 222 344588888654 477765
No 178
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.95 E-value=1.4e+02 Score=30.12 Aligned_cols=97 Identities=19% Similarity=0.430 Sum_probs=47.9
Q ss_pred cCcccccCCccCCCCccHHHHHHhhCC-------CcCC-hHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHH-hC
Q 015582 13 REQVVSPWEVSSSGKIDYDKLIDKFGC-------QRLD-QSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYE-KG 83 (404)
Q Consensus 13 ~~~~~~pw~~~~~~~~dy~~l~~~fg~-------~~i~-~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~-~~ 83 (404)
-++..|||+... +|+ ++++|+ .-++ -++|+.+-+ +|+ .-++++|. ....+.+..++.+. .|
T Consensus 91 i~~~stpfd~~s---vd~---l~~~~v~~~KI~S~~~~n~~LL~~va~-~gk--PvilstG~-~t~~Ei~~Av~~i~~~g 160 (327)
T TIGR03586 91 LTIFSSPFDETA---VDF---LESLDVPAYKIASFEITDLPLIRYVAK-TGK--PIIMSTGI-ATLEEIQEAVEACREAG 160 (327)
T ss_pred CcEEEccCCHHH---HHH---HHHcCCCEEEECCccccCHHHHHHHHh-cCC--cEEEECCC-CCHHHHHHHHHHHHHCC
Confidence 356677777653 433 344432 2222 224444444 344 45688887 34444444444443 33
Q ss_pred C-ceEEE---EecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccC
Q 015582 84 E-KFYLY---TGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127 (404)
Q Consensus 84 ~-~~~iy---tG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D 127 (404)
. ++.++ +++ |+. . +-+.+..+..|++.+++||-+ .|
T Consensus 161 ~~~i~LlhC~s~Y-P~~--~---~~~nL~~i~~lk~~f~~pVG~--SD 200 (327)
T TIGR03586 161 CKDLVLLKCTSSY-PAP--L---EDANLRTIPDLAERFNVPVGL--SD 200 (327)
T ss_pred CCcEEEEecCCCC-CCC--c---ccCCHHHHHHHHHHhCCCEEe--eC
Confidence 3 34432 232 442 1 223344456788888888754 55
No 179
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=20.44 E-value=1e+02 Score=33.46 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=26.6
Q ss_pred EEecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCccc
Q 015582 89 YTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDEK 130 (404)
Q Consensus 89 ytG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~~a 130 (404)
|+.-=|++ .||+||+-..+ +.+-|.- .|..|.-. |+||=.
T Consensus 119 ~sSpNp~k-plHvGH~R~aiiGd~l~ril~~-~G~~V~r~nyinD~G~ 164 (562)
T PRK12451 119 YSSPNIAK-PFSMGHLRSTMIGNALKHIAEK-CGYEVVGINYIGDWGT 164 (562)
T ss_pred ecCCCCCC-CcccchhhhHHHHHHHHHHHHH-CCCCeEEEeeecCchH
Confidence 78888998 79999987654 2333444 46555433 788754
Done!