Query 015582
Match_columns 404
No_of_seqs 236 out of 1749
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 15:07:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tze_A Tryptophanyl-tRNA synth 100.0 3E-101 1E-105 780.1 29.6 381 10-399 20-406 (406)
2 3hv0_A Tryptophanyl-tRNA synth 100.0 1E-100 4E-105 774.3 25.9 381 16-402 3-386 (393)
3 3i05_A Tryptophanyl-tRNA synth 100.0 3E-100 1E-104 771.9 25.9 381 13-402 8-389 (395)
4 3hzr_A Tryptophanyl-tRNA synth 100.0 3.8E-97 1E-101 746.6 30.9 376 14-399 11-386 (386)
5 3jxe_A Tryptophanyl-tRNA synth 100.0 4.9E-96 2E-100 739.9 30.0 366 13-399 3-370 (392)
6 1r6t_A Tryptophanyl-tRNA synth 100.0 6.9E-96 2E-100 756.3 28.5 389 10-403 78-470 (477)
7 1r6u_A Tryptophanyl-tRNA synth 100.0 4.6E-96 2E-100 748.7 24.6 389 10-403 31-423 (437)
8 2ip1_A Tryptophanyl-tRNA synth 100.0 1.1E-94 3.9E-99 739.1 29.8 388 9-401 19-414 (432)
9 3foc_A Tryptophanyl-tRNA synth 100.0 3E-93 1E-97 727.7 28.0 370 26-400 32-451 (451)
10 3a04_A Tryptophanyl-tRNA synth 100.0 1.6E-89 5.5E-94 690.3 27.2 362 13-396 2-369 (372)
11 3prh_A Tryptophanyl-tRNA synth 100.0 2.9E-64 9.9E-69 506.9 20.1 302 66-396 11-336 (388)
12 2cya_A Tyrosyl-tRNA synthetase 100.0 1.6E-62 5.4E-67 493.2 22.4 295 59-384 10-347 (364)
13 2cyc_A Tyrosyl-tRNA synthetase 100.0 1.4E-62 4.7E-67 495.2 20.0 297 59-385 7-361 (375)
14 3tzl_A Tryptophanyl-tRNA synth 100.0 4.8E-62 1.7E-66 482.1 20.5 280 85-396 3-300 (322)
15 2j5b_A Tyrosyl-tRNA synthetase 100.0 1.1E-61 3.7E-66 484.5 20.7 304 59-398 15-348 (348)
16 3sz3_A Tryptophanyl-tRNA synth 100.0 6.8E-62 2.3E-66 483.6 15.2 284 86-396 7-315 (341)
17 2g36_A Tryptophanyl-tRNA synth 100.0 3.2E-61 1.1E-65 479.5 19.6 286 84-396 11-316 (340)
18 2yxn_A Tyrosyl-tRNA synthetase 100.0 8.8E-62 3E-66 480.6 14.6 290 58-385 7-321 (322)
19 1yi8_B Tryptophanyl-tRNA synth 100.0 6.3E-61 2.1E-65 479.3 20.8 288 83-396 20-326 (351)
20 3vgj_A Tyrosyl-tRNA synthetase 100.0 1.2E-60 4E-65 480.4 22.6 303 58-387 30-358 (373)
21 3n9i_A Tryptophanyl-tRNA synth 100.0 5.2E-61 1.8E-65 477.4 17.6 284 85-396 15-320 (346)
22 2el7_A Tryptophanyl-tRNA synth 100.0 5.5E-60 1.9E-64 470.3 23.9 284 87-396 3-305 (337)
23 2yy5_A Tryptophanyl-tRNA synth 100.0 2.9E-60 9.8E-65 474.0 17.5 286 84-397 3-321 (348)
24 1i6k_A TRPRS, tryptophanyl-tRN 100.0 4.4E-60 1.5E-64 469.4 18.6 280 86-396 2-302 (328)
25 2cyb_A Tyrosyl-tRNA synthetase 100.0 4.1E-59 1.4E-63 462.1 23.8 292 59-384 7-321 (323)
26 2jan_A Tyrosyl-tRNA synthetase 100.0 2.3E-59 7.9E-64 477.4 19.6 290 58-387 6-320 (432)
27 3p0j_A Tyrosyl-tRNA synthetase 100.0 5.6E-58 1.9E-62 491.1 25.7 316 60-395 16-360 (690)
28 1n3l_A Tyrosyl-tRNA synthetase 100.0 5.7E-58 2E-62 461.5 22.6 290 58-383 10-329 (372)
29 2zp1_A Tyrosyl-tRNA synthetase 100.0 8.5E-58 2.9E-62 450.8 23.2 285 59-384 4-308 (314)
30 2pid_A Tyrosyl-tRNA synthetase 100.0 2.2E-58 7.4E-63 461.5 16.7 289 58-387 12-342 (356)
31 2ts1_A Tyrosyl-tRNA synthetase 100.0 5.5E-58 1.9E-62 466.4 19.7 290 59-386 5-317 (419)
32 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 7.4E-57 2.5E-61 459.1 23.3 290 59-387 7-319 (420)
33 2dlc_X Tyrosyl-tRNA synthetase 100.0 4.6E-57 1.6E-61 458.0 20.5 302 59-394 13-351 (394)
34 1h3f_A Tyrosyl-tRNA synthetase 100.0 4.8E-57 1.7E-61 461.4 19.9 290 58-395 11-325 (432)
35 1y42_X Tyrosyl-tRNA synthetase 100.0 1.4E-55 5E-60 445.7 21.5 292 58-387 37-381 (392)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 3.2E-48 1.1E-52 415.7 18.6 272 83-386 380-672 (690)
37 1nzj_A Hypothetical protein YA 98.5 1.8E-07 6.1E-12 91.1 9.4 178 93-296 13-242 (298)
38 1j09_A Glutamyl-tRNA synthetas 98.5 3.2E-07 1.1E-11 94.5 10.0 188 93-307 9-272 (468)
39 2cfo_A Glutamyl-tRNA synthetas 98.5 1.8E-06 6.3E-11 89.4 14.6 189 93-307 9-276 (492)
40 2ja2_A Glutamyl-tRNA synthetas 98.3 2.1E-06 7.1E-11 89.0 10.3 188 93-307 14-286 (498)
41 3afh_A Glutamyl-tRNA synthetas 98.2 2.3E-06 7.9E-11 88.5 7.2 189 91-307 31-284 (488)
42 3al0_C Glutamyl-tRNA(Gln) amid 98.1 5.9E-06 2E-10 87.4 9.9 194 86-307 130-388 (592)
43 2o5r_A Glutamyl-tRNA synthetas 97.7 0.00058 2E-08 70.5 16.1 64 240-307 222-291 (481)
44 4g6z_A Glutamate-tRNA ligase; 97.6 0.0017 5.8E-08 67.0 16.4 69 93-171 33-102 (490)
45 3aii_A Glutamyl-tRNA synthetas 97.4 0.00046 1.6E-08 72.1 9.9 73 88-171 97-172 (553)
46 1irx_A Lysyl-tRNA synthetase; 97.4 0.00059 2E-08 71.1 10.0 65 241-307 235-308 (523)
47 4gri_A Glutamate--tRNA ligase; 96.7 0.044 1.5E-06 56.9 16.7 49 239-289 232-280 (512)
48 1qtq_A GLNRS, protein (glutami 93.5 0.14 4.7E-06 53.5 7.7 84 78-171 17-103 (553)
49 3fnr_A Arginyl-tRNA synthetase 92.3 0.035 1.2E-06 56.9 1.2 57 239-296 239-298 (464)
50 2hz7_A Glutaminyl-tRNA synthet 91.8 0.36 1.2E-05 52.7 8.3 84 78-171 57-143 (851)
51 3u1f_A Methionyl-tRNA syntheta 90.9 0.45 1.5E-05 49.2 7.7 79 81-160 6-96 (542)
52 2csx_A Methionyl-tRNA syntheta 90.1 0.14 4.8E-06 52.5 3.0 73 87-160 7-92 (497)
53 2d5b_A Methionyl-tRNA syntheta 89.3 0.18 6.2E-06 51.6 3.1 55 239-296 254-310 (500)
54 3kfl_A Methionyl-tRNA syntheta 87.1 0.18 6.2E-06 52.7 1.5 54 239-296 297-352 (564)
55 3u1f_A Methionyl-tRNA syntheta 85.7 0.33 1.1E-05 50.2 2.5 52 239-296 281-336 (542)
56 1ile_A Ilers, isoleucyl-tRNA s 85.1 0.39 1.3E-05 52.5 2.9 55 239-296 547-604 (821)
57 1iq0_A Arginyl-tRNA synthetase 83.9 0.17 5.8E-06 53.3 -0.7 54 239-296 350-407 (592)
58 4dlp_A Aminoacyl-tRNA syntheta 83.4 0.35 1.2E-05 50.1 1.5 74 85-160 26-112 (536)
59 3h99_A Methionyl-tRNA syntheta 82.4 0.45 1.5E-05 49.6 1.8 75 84-160 18-105 (560)
60 2x1l_A Methionyl-tRNA syntheta 82.1 0.34 1.2E-05 50.0 0.7 76 84-160 12-99 (524)
61 2zue_A Arginyl-tRNA synthetase 81.7 0.42 1.4E-05 50.8 1.2 56 238-297 379-440 (629)
62 1rqg_A Methionyl-tRNA syntheta 81.6 2.8 9.6E-05 45.1 7.7 76 84-160 2-90 (722)
63 3h99_A Methionyl-tRNA syntheta 81.0 3.4 0.00012 42.8 8.0 54 239-296 303-358 (560)
64 3foc_A Tryptophanyl-tRNA synth 80.6 0.28 9.7E-06 49.9 -0.4 33 213-250 213-247 (451)
65 1ffy_A Isoleucyl-tRNA syntheta 80.3 0.98 3.3E-05 50.0 3.7 53 239-296 551-608 (917)
66 3c8z_A Cysteinyl-tRNA syntheta 80.0 0.65 2.2E-05 46.6 2.0 72 87-160 42-126 (414)
67 2csx_A Methionyl-tRNA syntheta 79.2 3.3 0.00011 42.2 7.0 54 239-296 253-308 (497)
68 2d5b_A Methionyl-tRNA syntheta 78.8 3.9 0.00013 41.5 7.4 73 87-160 5-90 (500)
69 4arc_A Leucine--tRNA ligase; l 78.4 8 0.00027 42.6 10.1 92 60-160 37-140 (880)
70 3tqo_A Cysteinyl-tRNA syntheta 78.2 4.2 0.00014 41.4 7.3 72 87-160 28-111 (462)
71 1li5_A Cysrs, cysteinyl-tRNA s 77.6 0.81 2.8E-05 46.6 1.8 72 86-159 23-107 (461)
72 4dlp_A Aminoacyl-tRNA syntheta 77.4 7.6 0.00026 39.9 9.2 52 239-296 279-334 (536)
73 3kfl_A Methionyl-tRNA syntheta 76.4 6.3 0.00021 41.0 8.2 76 83-160 25-113 (564)
74 1gax_A Valrs, valyl-tRNA synth 76.0 1.4 4.8E-05 48.5 3.3 53 239-296 484-541 (862)
75 3sp1_A Cysteinyl-tRNA syntheta 71.8 8.6 0.0003 39.5 7.7 70 90-161 48-139 (501)
76 1wz2_A Leucyl-tRNA synthetase; 70.2 2.5 8.6E-05 47.0 3.6 54 239-296 606-663 (967)
77 3c8z_A Cysteinyl-tRNA syntheta 68.6 8.4 0.00029 38.4 6.8 54 239-296 247-304 (414)
78 2x1l_A Methionyl-tRNA syntheta 68.1 12 0.00039 38.3 7.8 54 239-296 268-323 (524)
79 1wkb_A Leucyl-tRNA synthetase; 67.3 2.3 7.7E-05 46.3 2.4 54 239-296 606-663 (810)
80 1f7u_A Arginyl-tRNA synthetase 65.8 2.1 7.1E-05 45.2 1.6 57 239-301 368-425 (607)
81 1li5_A Cysrs, cysteinyl-tRNA s 65.0 9.9 0.00034 38.5 6.5 54 239-296 223-279 (461)
82 3tqo_A Cysteinyl-tRNA syntheta 63.1 2 6.8E-05 43.9 0.9 24 270-296 259-282 (462)
83 1rqg_A Methionyl-tRNA syntheta 57.4 2.8 9.6E-05 45.1 0.8 30 263-296 327-357 (722)
84 2v0c_A Aminoacyl-tRNA syntheta 54.1 20 0.00068 39.4 6.9 90 60-159 16-119 (878)
85 2v0c_A Aminoacyl-tRNA syntheta 53.9 3.4 0.00012 45.5 0.8 15 281-296 636-650 (878)
86 1ffy_A Isoleucyl-tRNA syntheta 51.6 16 0.00055 40.3 5.7 43 83-126 47-93 (917)
87 1ile_A Ilers, isoleucyl-tRNA s 47.7 8.1 0.00028 42.0 2.5 48 82-130 36-88 (821)
88 3sp1_A Cysteinyl-tRNA syntheta 47.5 5.2 0.00018 41.2 0.9 52 240-295 257-311 (501)
89 3oqi_A YVMC, putative uncharac 47.2 1.4E+02 0.0047 27.8 10.5 93 81-180 27-130 (257)
90 1iq0_A Arginyl-tRNA synthetase 46.6 12 0.0004 39.2 3.5 41 86-128 106-152 (592)
91 4arc_A Leucine--tRNA ligase; l 44.3 12 0.00041 41.1 3.2 14 282-296 639-652 (880)
92 1f7u_A Arginyl-tRNA synthetase 44.2 16 0.00056 38.3 4.1 38 89-128 149-192 (607)
93 2ejc_A Pantoate--beta-alanine 43.3 2.1E+02 0.0073 26.8 17.4 45 247-298 151-195 (280)
94 1gax_A Valrs, valyl-tRNA synth 42.7 19 0.00066 39.4 4.5 60 60-129 19-82 (862)
95 2zue_A Arginyl-tRNA synthetase 40.9 18 0.00062 38.1 3.8 38 89-128 125-168 (629)
96 3fnr_A Arginyl-tRNA synthetase 33.5 33 0.0011 34.7 4.3 47 83-130 29-81 (464)
97 1wkb_A Leucyl-tRNA synthetase; 21.9 35 0.0012 36.9 2.1 58 60-124 16-77 (810)
98 3oqv_A ALBC; rossman fold, cyc 20.9 2.2E+02 0.0074 26.3 6.9 98 87-187 31-140 (247)
99 3ci9_A Heat shock factor-bindi 20.5 1.6E+02 0.0055 20.2 4.5 29 365-393 5-33 (48)
No 1
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=3.4e-101 Score=780.08 Aligned_cols=381 Identities=45% Similarity=0.867 Sum_probs=344.4
Q ss_pred hhccCcccccCCccCC------CCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhC
Q 015582 10 EEEREQVVSPWEVSSS------GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83 (404)
Q Consensus 10 ~~~~~~~~~pw~~~~~------~~~dy~~l~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~ 83 (404)
.++.++.||||+|++. ..|||+|||++||+++||+++++||+++||+++|+|++||+||+|+|++.+++++++|
T Consensus 20 ~~~~~~~v~pw~v~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~RG~i~~~~d~~~ll~~~~~~ 99 (406)
T 3tze_A 20 GSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAHRDFNLLLDEIANN 99 (406)
T ss_dssp --------------------CCSCCCHHHHHHTTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTT
T ss_pred CccCCcccCccccccccccCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCCCeeccccHHHHHHHHhcC
Confidence 3557899999999862 3699999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015582 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (404)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (404)
+|+++|+||+|||++|||||++++++++|||+++|++++|+|||+||++.++++++++++|+++++++|+|||+||++++
T Consensus 100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~ 179 (406)
T 3tze_A 100 RPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTY 179 (406)
T ss_dssp CCEEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEE
T ss_pred CCeEEEEeeCCCCCcccHHHHHHHHHHHHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 99999999999988999999999989999999989999999999999977779999999999999999999999999999
Q ss_pred EEeCCccCccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccc
Q 015582 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCA 243 (404)
Q Consensus 164 i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G 243 (404)
||+||+|.+ .+|.++++|+|++|++++++++||++++|+|+|+||+|| |||+|+++||.++.+. .|+||||
T Consensus 180 i~~qs~~~~-~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQ-----aaD~~~~~~p~il~~~---a~lvpvG 250 (406)
T 3tze_A 180 IFSNVEASH-HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKE-----IAPCFSSSFRFIGKGA---MCLVPAA 250 (406)
T ss_dssp EEEHHHHGG-GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHH-----HGGGSGGGSTTSCTTC---EEEEEEE
T ss_pred EEeccHhHH-HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHh-----hhhhhccchHHhccCC---CeEEeec
Confidence 999999985 889999999999999999999999899999999999999 9999999999987654 4899999
Q ss_pred cCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhc
Q 015582 244 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKL 323 (404)
Q Consensus 244 ~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~ 323 (404)
.||+||+++|||+|+|+|+++|.++++++||+|+|+++|||||.|||+|||+|+|++|++||++|||||++.+++++++.
T Consensus 251 ~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~ 330 (406)
T 3tze_A 251 VDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREK 330 (406)
T ss_dssp GGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHHHCCCCCCCC-------
T ss_pred cchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHhhccCCCcccccccccC
Confidence 99999999999999999999999999999999999767999999888999999999999999999999999999999999
Q ss_pred CCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCC
Q 015582 324 GANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399 (404)
Q Consensus 324 g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~~~~~~~~~~~~ 399 (404)
|+||++|++|+|+++|+++++++++|+++|++|+++|++||+.||+.|+++|+|+|++|++++++.|++||.+|+|
T Consensus 331 ~g~p~v~~l~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~ 406 (406)
T 3tze_A 331 GGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406 (406)
T ss_dssp CCCGGGCHHHHHHHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCGGGC
T ss_pred CCCCcccHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcCCC
Confidence 9999999999999999878899999999999999999999999999999999999999999999999999999875
No 2
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=1.2e-100 Score=774.31 Aligned_cols=381 Identities=55% Similarity=0.985 Sum_probs=337.5
Q ss_pred ccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceEEEEecC
Q 015582 16 VVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG 93 (404)
Q Consensus 16 ~~~pw~~~~--~~~~dy~~l~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~ 93 (404)
-||||+|++ .+.+||+|||++||+++||+++++||+++||+++|+|++||+|++|+|++.+++++++|+|+++|+||+
T Consensus 3 ~~~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~~ 82 (393)
T 3hv0_A 3 GSMPWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDFEKILDVYEKGELFYLYTGRG 82 (393)
T ss_dssp -----------------CCHHHHTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCCcccccCCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccCCHHHHHHHHhcCCCeEEEeCCC
Confidence 589999987 347999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCccccccc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCc
Q 015582 94 PSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (404)
Q Consensus 94 PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~-~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~ 172 (404)
|||++|||||++++++++|||+++|++++|+|||+||++.+ .++++++++++++++++|+|+|+||++++||+||+|++
T Consensus 83 PTa~~lHlGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~ 162 (393)
T 3hv0_A 83 PSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA 162 (393)
T ss_dssp CSSSSCBSTTHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHHH
Confidence 99879999999999999999999999999999999998766 69999999999999999999999999999999999984
Q ss_pred cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHH
Q 015582 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRM 252 (404)
Q Consensus 173 ~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l 252 (404)
.+|.++++++|++|+++|++++||++++|+|+|+||+|| |||+|+.+||+++..+.|.+|+||||.||+||+++
T Consensus 163 -~~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQ-----aaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l 236 (393)
T 3hv0_A 163 -ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQ-----AAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRM 236 (393)
T ss_dssp -HHHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHH-----HGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHH
T ss_pred -HHHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHH-----HHHHHhhhhHHHhcccCCCceecccccchHHHHHH
Confidence 668999999999999999999999999999999999999 99999999998887777778999999999999999
Q ss_pred HHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhH
Q 015582 253 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIP 332 (404)
Q Consensus 253 ~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~ 332 (404)
+||+|+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++||++|||||+..+.+++++.||||++|++
T Consensus 237 ~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~ 316 (393)
T 3hv0_A 237 VRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVS 316 (393)
T ss_dssp HHHHTGGGTCCCCEEEEECCCCC-------------CCCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHH
T ss_pred HHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHH
Confidence 99999999999999999999999999768999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCCCC
Q 015582 333 VKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNM 402 (404)
Q Consensus 333 ~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
|+|+++|+.+++++++|+++|++|+++|++||+.||+.|+++|+|+|++|++++++.|++||.+|++.+.
T Consensus 317 ~~~~~~~~~~~~~~eei~~~y~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~~~~ 386 (393)
T 3hv0_A 317 WQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKSREQLL 386 (393)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCCCCCC
T ss_pred HHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCcCHHHHH
Confidence 9999999888999999999999999999999999999999999999999999999999999999998764
No 3
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=3e-100 Score=771.90 Aligned_cols=381 Identities=55% Similarity=0.984 Sum_probs=314.3
Q ss_pred cCcccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceEEEEec
Q 015582 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (404)
Q Consensus 13 ~~~~~~pw~~~~~~~~dy~~l~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~ 92 (404)
.+.+||||+|++ .|||+|||++||+++||+++++||+++||+++|+|++||+||+|+|++.+++++++|+|+++|+||
T Consensus 8 ~~~~~~~~~~~~--~~dy~~l~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~RG~~~~~~d~~~~l~~~~~~~~~~vy~G~ 85 (395)
T 3i05_A 8 HEAVVTPWSVEG--DVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHRDLNLLLDVYESGQPFYLYTGR 85 (395)
T ss_dssp ----------------CHHHHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEE
T ss_pred ccceeccccccC--cccHHHHHHHhCCCcCCHHHHHHHHHhhCcchHHHHhcCCccccccHHHHHHHHhcCCCeEEEEee
Confidence 467899999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCc
Q 015582 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~ 172 (404)
+|||++|||||++|+++++|||+++|++++|+|||++++++++++++++++|+++++++|+|||+||++++||+||+|.+
T Consensus 86 ~PTg~~lHLGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~ 165 (395)
T 3i05_A 86 GPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYMG 165 (395)
T ss_dssp CCCSSCCBGGGSHHHHHHHHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHTT
T ss_pred cCCCccchHHHHHHHHHHHHHHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHHH
Confidence 99998999999999999999999999999999999999877779999999999999999999999999999999999986
Q ss_pred cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCC-CCcccccccccCchhHHH
Q 015582 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFR 251 (404)
Q Consensus 173 ~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~-~~~~~~vp~G~DQd~~~~ 251 (404)
.||.++++|+|++|++++++++||++++|+|+|+||+|| |||+|+++||||+.++ .+++|+||||.||+||++
T Consensus 166 -~~~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQ-----aaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~ 239 (395)
T 3i05_A 166 -CMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQ-----AAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFR 239 (395)
T ss_dssp -TSHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHH-----HGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHH
T ss_pred -HHHHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHH-----HHhhhcccchhhhcccccCCceEEEeccchHHHHH
Confidence 889999999999999999999999999999999999999 9999999999999887 445799999999999999
Q ss_pred HHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchh
Q 015582 252 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI 331 (404)
Q Consensus 252 l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v 331 (404)
++||+|+|+|+++|+++++++||+|+|+++||||| ++|+|||+|+|++|++||+++||||+..+.+++++.|+||++|+
T Consensus 240 l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS-~~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~ 318 (395)
T 3i05_A 240 LTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSS-SGTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDV 318 (395)
T ss_dssp HHHHTHHHHTCCCCEEEEECCCCCC--------------CCBTTCCHHHHHHHHC----------------------CCH
T ss_pred HHHHHHHHcCCCCceeeccccccCCCCCcccCCCC-CCCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhH
Confidence 99999999999999999999999999977899999 77799999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCCCC
Q 015582 332 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNM 402 (404)
Q Consensus 332 ~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
+|+|+++|+++++++++|+++|++|+++|++||+.||+.|+++|+|+|++|++++++.|++||..+++...
T Consensus 319 ~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~~~~ 389 (395)
T 3i05_A 319 PIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMGPA 389 (395)
T ss_dssp HHHHHHHHCCCSHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCTTT
T ss_pred HHHHHHHHcCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhChhcccch
Confidence 99999999878899999999999999999999999999999999999999999999999999999998654
No 4
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=3.8e-97 Score=746.63 Aligned_cols=376 Identities=28% Similarity=0.610 Sum_probs=358.6
Q ss_pred CcccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceEEEEecC
Q 015582 14 EQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG 93 (404)
Q Consensus 14 ~~~~~pw~~~~~~~~dy~~l~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~ 93 (404)
...++||..+..+.+||+|||++||+++||+++++||+++||+++|+|++||+||+|||++.+++++++|+++++|+||+
T Consensus 11 ~~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~d~~~ll~~~~~~~~~~vysG~~ 90 (386)
T 3hzr_A 11 QTPSQLLQSFTTRTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQKY 90 (386)
T ss_dssp --CCCSSCCCCSSSCCSHHHHHHHTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEESSHHHHHHHHHTTCCEEEEEEEC
T ss_pred CCCcchhhhcCcccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCchHHHHCcCccccccHHHHHHHHhcCCCeEEEeccC
Confidence 34689998776778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCcc
Q 015582 94 PSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 173 (404)
Q Consensus 94 PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~ 173 (404)
|||. |||||++++++++|||+++|++++|+|||++|++.|+++++++++|+++++++|+|||+||++++||.||+|++
T Consensus 91 PTG~-lHLGh~v~~~~~~~lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~- 168 (386)
T 3hzr_A 91 PQKE-VALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG- 168 (386)
T ss_dssp CCSS-CBGGGHHHHHHHHHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH-
T ss_pred CCCC-ccHHHHHHHHHHHHHHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH-
Confidence 9995 99999999988999999889999999999999987779999999999999999999999999999999999986
Q ss_pred chHHHHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHH
Q 015582 174 AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT 253 (404)
Q Consensus 174 ~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~ 253 (404)
.+|..+.+++|++|++++++++|+++++|+|+|+||+|| |||+|+.+|||++.++ ++|+||||.||+||+++|
T Consensus 169 ~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQ-----aaD~~~~~~pdil~~~--~a~~VpvG~DQ~~hl~l~ 241 (386)
T 3hzr_A 169 KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIM-----TASMFSQSYSHFFSSP--ARCLVLDSIKNVQFHSII 241 (386)
T ss_dssp HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHH-----HHTTSGGGCTTTCSSC--CEEEEEEEGGGHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHH-----HHHHhhhcchHhhCCC--CccccccccchHHHHHHH
Confidence 788899999999999999999999899999999999999 9999999999998764 459999999999999999
Q ss_pred HHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHH
Q 015582 254 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV 333 (404)
Q Consensus 254 rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~ 333 (404)
||+|+|+|+++|+++++++||||+|+ +|||||+++|+|||+|+|++|++||+++||||++.|.+++++.|++|++|+++
T Consensus 242 Rdla~r~n~~~p~~l~~~~l~gLdG~-~KMSKSd~~~~I~L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~ 320 (386)
T 3hzr_A 242 DQIATTLNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSF 320 (386)
T ss_dssp HHHHHHHTCCCCEEEEECCCCCTTCT-TCCCCCCTTTSCBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHH
T ss_pred HHHHHHcCCCCceEeecCeeeCCCCC-CccCcCCCCCeeecCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHH
Confidence 99999999999999999999999996 49999998899999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCC
Q 015582 334 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399 (404)
Q Consensus 334 ~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~~~~~~~~~~~~ 399 (404)
+|+++|+.+++++++|+++|++|+++|++||+.||++|+++|+|+|++|++++++.|++||.+|++
T Consensus 321 ~~~~~~~~~~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~~~~~~~~~ 386 (386)
T 3hzr_A 321 QLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTKF 386 (386)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHCC
T ss_pred HHHHHHcCChhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 999999877889999999999999999999999999999999999999999999999999999875
No 5
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.9e-96 Score=739.92 Aligned_cols=366 Identities=42% Similarity=0.759 Sum_probs=330.6
Q ss_pred cCcccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceEEEEec
Q 015582 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (404)
Q Consensus 13 ~~~~~~pw~~~~~~~~dy~~l~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~ 92 (404)
+++.||||+|++ .+||+|||++||+++||+++++||+++||+++|+|++||+|++|+|++.+++++++|+|+++|+|+
T Consensus 3 ~~~~v~pw~v~~--~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~Rg~i~~~~d~~~l~~~~~~~~p~~i~sG~ 80 (392)
T 3jxe_A 3 EEFKVTPWEVEG--VVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLILKDYEEGRGFFLYTGR 80 (392)
T ss_dssp CCCEECSSCEES--CCCHHHHHHHTTCEECCHHHHHHHHHHTTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCeeCCccccC--cccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCcCcccccCHHHHHHHHhcCCCeEEEecc
Confidence 578999999998 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC
Q 015582 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (404)
+||| +|||||++++++++|||+.+|++++|+|||+||++.++ .+++++++++++++++|+|||+||++++||.||+|+
T Consensus 81 ~PTG-~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~ 159 (392)
T 3jxe_A 81 GPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT 159 (392)
T ss_dssp CCSS-CCBHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTST
T ss_pred CCCC-chhHHHHHHHHHHHHHHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchhH
Confidence 9997 99999999998899999966999999999999998765 899999999999999999999999999999999998
Q ss_pred ccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHH
Q 015582 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFR 251 (404)
Q Consensus 172 ~~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~ 251 (404)
+ ++..++.+++++|+++|+++++|++++|+|+|+||+|| || ||+.++ ..|+||||.||+||++
T Consensus 160 ~--~~~~~~~l~~~~t~~~~~~~~~~~~~~~~g~f~YP~LQ-----aa--------Dil~~~--~a~~vpvG~DQ~~hl~ 222 (392)
T 3jxe_A 160 K--IYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQ-----IA--------PTFFER--KRCLIPAAIDQDPYWR 222 (392)
T ss_dssp H--HHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHH-----HG--------GGGSSS--SCEEEEEEGGGHHHHH
T ss_pred H--HHHHHHHHHhhCCHHHHhhhhccCCCCchHHHHHHHHH-----Hh--------hHHhhc--CCceeecccchHHHHH
Confidence 5 88888999999999999999999999999999999999 99 998884 2489999999999999
Q ss_pred HHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchh
Q 015582 252 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI 331 (404)
Q Consensus 252 l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v 331 (404)
+|||+|+|+|+++|..+++++||||+|+++|||||.+||+|||+|+|++|++||++||+||+..+++++++.|+||++|+
T Consensus 223 l~Rdla~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~ 302 (392)
T 3jxe_A 223 LQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCV 302 (392)
T ss_dssp HHHHHTGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTCCHHHHHHHHHTCC--------------------CH
T ss_pred HHHHHHHHcCCCCCeeeecccccCCCCCccccccCCCCCeeeCCCCHHHHHHHHHhhccCCCCcccccccccCCCCchhH
Confidence 99999999999999999999999999987799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc-CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCC
Q 015582 332 PVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399 (404)
Q Consensus 332 ~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~~~~~~~~~~~~ 399 (404)
+|+|+.+|+ .+++++++|+++|++|+++|++||+.||+.|+++|+|+|++|++++ ++|++||..+++
T Consensus 303 ~~~~l~~~~~~~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~-~~v~~~l~~g~~ 370 (392)
T 3jxe_A 303 VFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE-KLVEKFKYTGKL 370 (392)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSHHHHHTTSHH
T ss_pred HHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcc
Confidence 999999997 5889999999999999999999999999999999999999999999 699999988765
No 6
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=6.9e-96 Score=756.29 Aligned_cols=389 Identities=62% Similarity=1.099 Sum_probs=357.8
Q ss_pred hhccCcccccCCccCC--CCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceE
Q 015582 10 EEEREQVVSPWEVSSS--GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFY 87 (404)
Q Consensus 10 ~~~~~~~~~pw~~~~~--~~~dy~~l~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~ 87 (404)
++..++.||||+|++. +.|||+|||++|||++||+++++||+++||+++|+|++||+|++|+|++.|++++++|++++
T Consensus 78 ~~~~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~ 157 (477)
T 1r6t_A 78 TEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFY 157 (477)
T ss_dssp ----CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEE
T ss_pred cccccceeCCccccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCcccHHHHhCCCccccCCHHHHHHHHhcCCCcE
Confidence 4456899999999872 34999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeC
Q 015582 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (404)
Q Consensus 88 iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~ 167 (404)
+|+||+|||++|||||++|+++++|||+.+|++++|+|||+|+++.+.++.+++++|+++++++|+|||+||++++||.|
T Consensus 158 vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~n 237 (477)
T 1r6t_A 158 LYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 237 (477)
T ss_dssp EEEEECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEH
T ss_pred EEEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEec
Confidence 99999999779999999999889999996699999999999999876799999999999999999999999999999999
Q ss_pred CccCc--cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccC
Q 015582 168 FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAID 245 (404)
Q Consensus 168 s~~~~--~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~D 245 (404)
|+|++ ..++.++++|++++|++++++++++.+++|+|+|+||+|| |||+|..+++..++.+...+|+||||.|
T Consensus 238 sd~~~~l~~~~~~~~~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQ-----AaDil~l~~d~~~g~~~~~~~~VpvG~D 312 (477)
T 1r6t_A 238 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDIQCLIPCAID 312 (477)
T ss_dssp HHHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHH-----HGGGSGGGCHHHHTTCCCCEEEEEEEGG
T ss_pred hhhhcccHHHHHHHHHHHhhccHHHHHHHhCCCCCCChhhhhhHHHH-----HHHHHHhccchhhccccCCceeEecccc
Confidence 99985 3789999999999999999999998889999999999999 9955555443333334445699999999
Q ss_pred chhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCC
Q 015582 246 QDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGA 325 (404)
Q Consensus 246 Qd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~ 325 (404)
|+||++++||+|+|+|+++|..+++++||+|+|+++|||||.+||+|||+|+|++|++||++|||||+..+.+++++.|+
T Consensus 313 Q~~~i~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~ 392 (477)
T 1r6t_A 313 QDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGG 392 (477)
T ss_dssp GHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCCceeecCCHHHHHHHhccccccCCccchhhccccCC
Confidence 99999999999999999999999999999999865799999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCCCCC
Q 015582 326 NLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 403 (404)
Q Consensus 326 ~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
||++|++++||++|+.+++++++|+++|.+|+++++++|+.||++|+++||++|++|++++++.|++||..|+|.|.+
T Consensus 393 ~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~Lae~i~~~l~pirer~~~~~~~~v~~~~~~~~~~~~~ 470 (477)
T 1r6t_A 393 NCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAAAL 470 (477)
T ss_dssp CTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC---
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhh
Confidence 999999999999998889999999999999999999999999999999999999999999998899999999999864
No 7
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=4.6e-96 Score=748.67 Aligned_cols=389 Identities=62% Similarity=1.098 Sum_probs=357.7
Q ss_pred hhccCcccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceE
Q 015582 10 EEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFY 87 (404)
Q Consensus 10 ~~~~~~~~~pw~~~~--~~~~dy~~l~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~ 87 (404)
+++.++.||||+|++ .+.|||+|||++|||++||+++++||+++||+++|+|++||+|++|+|++.+++++++|++++
T Consensus 31 ~~~~~~~v~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~ 110 (437)
T 1r6u_A 31 TEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFY 110 (437)
T ss_dssp ----CCEEETTEEECSCTTCSCTTTHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHHTSEEEEESHHHHHHHHTTTCCEE
T ss_pred cccccceeCCCcccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCCCcHHHHhCCCccCCCCHHHHHHHHhcCCCcE
Confidence 456689999999987 234999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeC
Q 015582 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (404)
Q Consensus 88 iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~ 167 (404)
+|+||+|||++|||||++|+++++|||+.+|++++|+|||+|+++.+.++.+++++|+++++++|+|+|+||++++||.|
T Consensus 111 vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~n 190 (437)
T 1r6u_A 111 LYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 190 (437)
T ss_dssp EEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEH
T ss_pred EEEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence 99999999779999999999889999996699999999999999876799999999999999999999999999999999
Q ss_pred CccCc--cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccC
Q 015582 168 FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAID 245 (404)
Q Consensus 168 s~~~~--~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~D 245 (404)
|+|++ ..++.++++|+++++++++++++++.+++|+|+|+||+|| |||+|..+++..++.+...+|+||||.|
T Consensus 191 Sd~~~~l~~~~~l~~~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQ-----AaDil~l~~d~~~g~~~~~~~lVpvG~D 265 (437)
T 1r6u_A 191 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDIQCLIPCAID 265 (437)
T ss_dssp HHHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHH-----HGGGSGGGCHHHHTTCCCCEEEEEEEGG
T ss_pred hhhhhhHHHHHHHHHHHHhhccHHHHHHHhCCCCCCchHhHHHHHHH-----HHHHHHhhcchhcccccCCceEEEeehh
Confidence 99985 3789999999999999999999998889999999999999 9944444332222223445699999999
Q ss_pred chhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCC
Q 015582 246 QDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGA 325 (404)
Q Consensus 246 Qd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~ 325 (404)
|+||++++||+|+|+|+++|..+++++||+|+|+++|||||.+||+|||+|+|++|++||++|||||+..+.+++++.|+
T Consensus 266 Q~~~i~l~Rdla~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~ 345 (437)
T 1r6u_A 266 QDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGG 345 (437)
T ss_dssp GHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCB
T ss_pred hHHHHHHHHHHHHHhCCCCceEeecccccCCCCCccccCCCCCCCeeeccCCHHHHHHHhhccccCCCccchhhccccCC
Confidence 99999999999999999999999999999999866799999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCCCCC
Q 015582 326 NLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 403 (404)
Q Consensus 326 ~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
||++|++++||++|+.+++++++|+++|.+|+++++++|+.||++|+++|+++|++|++++++.|++||..++|.|.+
T Consensus 346 ~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~LAe~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~~~ 423 (437)
T 1r6u_A 346 NCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 423 (437)
T ss_dssp CTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTSCCCCSCC-
T ss_pred CccHHHHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcch
Confidence 999999999999998889999999999999999999999999999999999999999999998899999999998854
No 8
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=1.1e-94 Score=739.11 Aligned_cols=388 Identities=53% Similarity=0.948 Sum_probs=336.6
Q ss_pred hhhccCcccccCCccCC-------CCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHH
Q 015582 9 REEEREQVVSPWEVSSS-------GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYE 81 (404)
Q Consensus 9 ~~~~~~~~~~pw~~~~~-------~~~dy~~l~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~ 81 (404)
..++.++.||||+|++. +.|||+|||++|||+|||+++++||+++||+++|+|++||+|++|+|++.|+++++
T Consensus 19 ~~~~~~~~v~pw~~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~ 98 (432)
T 2ip1_A 19 STDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFFSERDFTKILDLYE 98 (432)
T ss_dssp ---------------------------CHHHHHHHHTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHH
T ss_pred ccccccceeCCCcccCccccccccccCCHHHHHHHhCCCcCCHHHHHHHHHhhCCccHHHHhCCCcccCCCHHHHHHHHh
Confidence 34556899999999872 23999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 015582 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVT 160 (404)
Q Consensus 82 ~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-~~~e~i~~~~~~~~~~ilA~G~dp~ 160 (404)
+|+|+++|+||+|||++|||||++++++++|||+.+|++++++|||+||++.++ ++++++++++.+++++|+|||+||+
T Consensus 99 ~g~~~~vy~G~dPTag~LHLGh~v~~~~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 99 QGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK 178 (432)
T ss_dssp HTCCCEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred cCCCeEEEEeecCCCCCccHHHHHHHHHHHHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999997799999999998899999966899999999999988764 8999999999999999999999999
Q ss_pred ceEEEeCCccCccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCccccc
Q 015582 161 KTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLI 240 (404)
Q Consensus 161 kt~i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~v 240 (404)
+++||.||+|++..++..+++++|+++++++++++|+.+++|+|+|+||+|| |||+|..+++..+..+....|+|
T Consensus 179 k~~i~~nSd~~~~~~~~~~~~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQ-----AaDil~l~~d~~~~~~~~~~~lv 253 (432)
T 2ip1_A 179 NTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQ-----IATAFPSSFPNVLGLPDKTPCLI 253 (432)
T ss_dssp GEEEEEHHHHCSHHHHHHHHHHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHH-----HHTTSGGGCTTTTCCCTTCCEEE
T ss_pred ceEEEeCchhhhhhHHHHHHHHHhhhcHHHHHHHhCCCCCCchhhhhHHHHH-----HHHHHHhccchhhcccCCCceEE
Confidence 9999999999866778888899999999999999998889999999999999 99666666643333112345899
Q ss_pred ccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHH
Q 015582 241 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELH 320 (404)
Q Consensus 241 p~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~ 320 (404)
|||.||+||++++||+|+|+|+++|.++++++||+|+|+++|||||.+|++|||+|+|++|++||++|||||++.+.+++
T Consensus 254 p~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI~~yA~t~~~~~~~~~ 333 (432)
T 2ip1_A 254 PCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQVSADLH 333 (432)
T ss_dssp EEEGGGHHHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGGGCCBTTCCHHHHHHHHHHHSCCCSCSSHHHH
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCCCeEeccCCHHHHHHHhhhhcccCCccchhhc
Confidence 99999999999999999999999999999999999999778999999998999999999999999999999999999999
Q ss_pred hhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCC
Q 015582 321 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP 400 (404)
Q Consensus 321 ~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~~~~~~~~~~~~~ 400 (404)
++.|+||++|++++||++|+.+++++++|+++|.+|++++++||+.||++|++++||+|++|++++++.|++|+..+++.
T Consensus 334 ~~~g~~pd~~~v~~~l~~f~~~~~eieel~~~~~~G~~~~~~~K~~La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~ 413 (432)
T 2ip1_A 334 RELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLV 413 (432)
T ss_dssp HHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCCC
T ss_pred cccCCCchHHHHHHHHHHHCCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHH
Confidence 99999999999999999998789999999999999999999999999999999999999999999998899999998875
Q ss_pred C
Q 015582 401 N 401 (404)
Q Consensus 401 ~ 401 (404)
+
T Consensus 414 ~ 414 (432)
T 2ip1_A 414 W 414 (432)
T ss_dssp C
T ss_pred H
Confidence 4
No 9
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=3e-93 Score=727.73 Aligned_cols=370 Identities=48% Similarity=0.854 Sum_probs=349.4
Q ss_pred CCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchH
Q 015582 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLV 105 (404)
Q Consensus 26 ~~~dy~~l~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v 105 (404)
..+||+|||++||+++||+++++||+++||+++|+|++||+||+|+|++.|++++++|+|+++||||+|||++|||||++
T Consensus 32 ~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~dl~~ll~~l~~g~p~~vytG~dPTagsLHLGH~v 111 (451)
T 3foc_A 32 AAVAYEDIITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLL 111 (451)
T ss_dssp HHHHHHHHHHTTTCBCCCHHHHHHHHHHHTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBHHHHH
T ss_pred ccCcHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccccHHHHHHHHhcCCCeEEEecCCCCCCCccHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999997799999999
Q ss_pred HHhhHHHHHhhCCCeEEEEccCccccccc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCc-cchHHHHHHHH
Q 015582 106 PFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVA 183 (404)
Q Consensus 106 ~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~-~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~-~~~~~~~~~l~ 183 (404)
++++++|||+++|++++|+|||||+++++ .++++++++|+++++++|+|||+||++++||.||+|++ ..+|..+.+++
T Consensus 112 ~~~~l~~lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~ 191 (451)
T 3foc_A 112 PFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVD 191 (451)
T ss_dssp HHHHHHHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHH
Confidence 99999999999999999999999999876 69999999999999999999999999999999999996 67888888999
Q ss_pred hhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCC----------------------------------Ccc
Q 015582 184 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSF----------------------------------PHL 229 (404)
Q Consensus 184 ~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~----------------------------------~Di 229 (404)
+++|+++|++++||++++|+|+|+||+|| |||+|+.+| .||
T Consensus 192 r~~Tv~~m~~~~~f~~~is~gef~YPlLQ-----AaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 266 (451)
T 3foc_A 192 RMLPISQLRASFGFSNDANVGYAAFPPKQ-----MLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDA 266 (451)
T ss_dssp HTCCHHHHHHHHCCCSSSCHHHHTCHHHH-----HGGGSGGGGTTSGGGCCBCC-------------------------C
T ss_pred hhCCHHHHHhhcccCCCCchHHHhhHHHH-----HHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhh
Confidence 99999999999999999999999999999 998887766 133
Q ss_pred ccCCCC--------------cccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeec
Q 015582 230 FSGKDH--------------LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 295 (404)
Q Consensus 230 ~~~~~~--------------~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~ 295 (404)
+.++++ .+|+||||.||+||+++|||+|+|+|+++|.++++++||||+|+++|||||.+||+|+|+
T Consensus 267 ~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~ 346 (451)
T 3foc_A 267 VLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLT 346 (451)
T ss_dssp CCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTT
T ss_pred hhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeec
Confidence 444433 789999999999999999999999999999999999999999976799999999899999
Q ss_pred CCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 015582 296 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 375 (404)
Q Consensus 296 D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l 375 (404)
|+|++|++||+++|||++..+++++++.|+||++|++|+||++|+.+++++++|+++|++|+++|++||+.||+.|+++|
T Consensus 347 D~p~~I~kKI~k~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l 426 (451)
T 3foc_A 347 DTPAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLI 426 (451)
T ss_dssp CCHHHHHHHHHHHSCCCSCSSHHHHHTTCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhhccCCCCccchhcccCCCCcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999878899999999999999999999999999999999
Q ss_pred hhHHHHHHHhhHHHHHHHHhcCCCC
Q 015582 376 ERHQVARAAVTDEMVDAFMAVRPLP 400 (404)
Q Consensus 376 ~~~r~~~~~~~~~~~~~~~~~~~~~ 400 (404)
+|+|+||++++++.|++||.+|+|.
T Consensus 427 ~pirer~~~l~~d~v~~f~~~~~~~ 451 (451)
T 3foc_A 427 KEHAERRDKVDTTMIESFTVKKELQ 451 (451)
T ss_dssp HHHHHHHHTCCHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhCcccCC
Confidence 9999999999999999999999873
No 10
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=1.6e-89 Score=690.27 Aligned_cols=362 Identities=28% Similarity=0.454 Sum_probs=325.6
Q ss_pred cCcccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceEEEEec
Q 015582 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (404)
Q Consensus 13 ~~~~~~pw~~~~~~~~dy~~l~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~ 92 (404)
.++.||||+|++ .+||+|||++||+++||+. + ++.++||.++|+|+||||||+|||++.||+++++|+|++||||+
T Consensus 2 ~~~~v~pw~~~~--~~dy~kl~~~fg~~~i~~~-l-~~~~~~~~~~h~~lrRgi~f~hRd~d~il~~~e~gk~~~v~sG~ 77 (372)
T 3a04_A 2 AAERLDPWGAVE--IKDYDRLLRTFGIRPFSEV-L-PLLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAVLTGF 77 (372)
T ss_dssp ----CCSSCSTT--TTTTHHHHHTTTCEEGGGG-H-HHHHHTTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCeeCCCCCCC--CcCHHHHHHHhCCCCcchH-H-HHHHhccCCcchhhccceeeeccCHHHHHHHHHcCCCCEEEeCc
Confidence 467899999998 8999999999999999976 4 77888999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCC-CHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC
Q 015582 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL-SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~-~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (404)
+||| +||||||+++++.+|+|+. ++.++++|||+||++.+.. +.+.++.++++++++|+|||+||+|++||.||++.
T Consensus 78 ~PTG-~lHLGhyv~~~~~~~lq~~-~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~ 155 (372)
T 3a04_A 78 MPSG-KFHFGHKLTVDQLIYLQKN-GFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRG 155 (372)
T ss_dssp CCCS-CCBHHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSC
T ss_pred CCCc-HhHHHHHHHHHHHHHHHhC-CCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccch
Confidence 9998 7999999999989999986 8899999999999987764 45668899999999999999999999999999875
Q ss_pred ccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHH
Q 015582 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFR 251 (404)
Q Consensus 172 ~~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~ 251 (404)
..++..+..+++++|++++.+.++ ..+.|.+.||++| |||+|..+++..++++ +|+||||.||+||++
T Consensus 156 -~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~yP~lq-----AaDil~~~~d~~~gy~---a~~VPVG~DQ~~hle 223 (372)
T 3a04_A 156 -TPYFRLIQLFSGKVTAAEMEAIYG---ELTPAKMMASLTQ-----AADILHVQLDEYGGYR---HVVVPVGADQDPHLR 223 (372)
T ss_dssp -HHHHHHHHHHTTSSCHHHHHHHHS---SCCHHHHHHHHHH-----HHHHHGGGSGGGTCCC---CEEEEEEGGGHHHHH
T ss_pred -HHHHHHHHHHHhhhhHHHHhhhhh---ccCcccccCCcch-----hHHHhhhcCccccCcc---ceecccchhhHHHHH
Confidence 567777888999999999999886 4688999999999 9955555553333344 489999999999999
Q ss_pred HHHHHHhHhC----CCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCC
Q 015582 252 MTRDVAPRIG----YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANL 327 (404)
Q Consensus 252 l~rdla~r~~----~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p 327 (404)
+|||+|+|+| .++|+.++++++|||+| .|||||.+||+|+|+|+|++|++||++ |+||+..+.+++++.||+|
T Consensus 224 ltRdiA~rfn~~~~~~~P~~~~~~~~pgldG--~KmS~S~~ns~I~l~D~p~~i~kKI~k-a~td~~~~~~~~~~~~G~p 300 (372)
T 3a04_A 224 LTRDLADRMAGVVELERPASTYHKLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVP 300 (372)
T ss_dssp HHHHHHHHTTTTSCCCCCEEEEECCCBCTTS--SBCCTTSGGGSCBTTCCHHHHHHHHHT-CCCSCCSSHHHHHHHCCCG
T ss_pred HHHHHHHHhcCcccccChhhhhhcccCCCCC--CccCCCCCCcccccCCCHHHHHHHHhc-CccCCCCCcccccccCCCC
Confidence 9999999998 57899999999999997 799999999999999999999999999 9999999999999999999
Q ss_pred cchhHHHHHHh-hcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhc
Q 015582 328 EVDIPVKYLSF-FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 396 (404)
Q Consensus 328 d~~v~~~~l~~-f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~~~~~~~~~ 396 (404)
++|++|+++.+ +.++++++++|+++|++|+++||+||+.|++.|+++|+|+|+||+++.+ ++.+++..
T Consensus 301 ~~~~i~~~~l~~~~~d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer~e~~~~-~~~kile~ 369 (372)
T 3a04_A 301 EVCSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQSRLEKAKT-IAWKLVEP 369 (372)
T ss_dssp GGCHHHHHHHHTTCCSHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTSCCC
T ss_pred chhhHHHHHHHccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhcc
Confidence 99999998655 4568899999999999999999999999999999999999999999877 77776643
No 11
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=2.9e-64 Score=506.91 Aligned_cols=302 Identities=21% Similarity=0.256 Sum_probs=238.0
Q ss_pred cccccCCHHHHHHHHHhC-CceE----EEEecCCCCCCcchhchHHHhh-HHHHHhhCCCeEEEEccCcccccccCCCHH
Q 015582 66 VFFAHRDLNDILDAYEKG-EKFY----LYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSVE 139 (404)
Q Consensus 66 i~~~~~d~~~ll~~~~~~-~~~~----iytG~~PTg~~lHlGh~v~~~~-~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e 139 (404)
|--+|||++.|++++++| +|++ +|||++||| .||||||+|++. ..+||+ ++.++++|||+||++. ..+++
T Consensus 11 ~~~~hrdld~il~~~e~g~~p~~m~~ri~sG~~PTG-~lHLGhyvGal~~~~~LQ~--~~~~~~~IaD~hAlt~-~~~~~ 86 (388)
T 3prh_A 11 IPNPLLGLDSTENLYFQGIDPFTMKQTIFSGIQPSG-SVTLGNYIGAMKQFVELQH--DYNSYFCIVDQHAITV-PQDRL 86 (388)
T ss_dssp ------------------------CCEEEEEECCCS-CCBHHHHHHTHHHHHHTTT--TSEEEEEECHHHHTTS-CCCHH
T ss_pred CCCccCCHHHHHHHHHcCCCCcccCCeEEEeeCCCC-cchHHHHHHHHHHHHHHHc--cCcEEEEEecceeeec-CCCHH
Confidence 446899999999999999 8998 999999998 699999999874 566997 6778888999999986 68999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEeCCccCccchHHHHHHHHhhcCHHHHHHhhCCC------CCccccccccccccc
Q 015582 140 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT------GEDHIGKVSFPPVQE 213 (404)
Q Consensus 140 ~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~~------~~~~~g~~~YpllQ~ 213 (404)
++++++++++++|+|||+||+|++||.||+|+++ ....+.++..+|++++.+..+|+ +++++|+|+||+||
T Consensus 87 ~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~~--~el~w~l~~~~~~~~L~R~~~fk~k~~~~~~~~~g~~~YPvLQ- 163 (388)
T 3prh_A 87 ELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAH--AQAGWMMQCVAYIGELERMTQFKDKSKGNEAVVSGLLTYPPLM- 163 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTHH--HHHHHHHHTTSCHHHHHTTC----------CCBHHHHSCHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCChhHeEEEecccccch--HHHHHHHHhhccHHHHHhhhhHhHHhhccCCCcchhHhhHHHH-
Confidence 9999999999999999999999999999999853 23334466666666665544443 67899999999999
Q ss_pred hhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCC------CCcceee---cccccCCCCCCCCCC
Q 015582 214 MIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMS 284 (404)
Q Consensus 214 ~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~------~kp~~l~---~~~lp~L~G~~~KMS 284 (404)
|| ||+.+++ |+||||.||+||+++|||+|+|+|+ ..|..+. +.++|||+|+++|||
T Consensus 164 ----AA--------DIl~~~a---d~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMS 228 (388)
T 3prh_A 164 ----AA--------DILLYGT---DLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMS 228 (388)
T ss_dssp ----HH--------HHHTTTC---CEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCC
T ss_pred ----HH--------HHHHhCC---CEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccC
Confidence 99 9999987 5899999999999999999999984 2243332 478999988678999
Q ss_pred CCCC--CCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHH
Q 015582 285 ASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGE 362 (404)
Q Consensus 285 kS~~--nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~ 362 (404)
||+| +|+|||+|+|++|++||++ |+|++...+++ ..+++|++|++++|+++| +++++++|+++|+ |. ++++
T Consensus 229 KS~~~~~n~I~L~D~p~~I~kKI~k-a~TD~~~~~~~--~~~~~p~v~~l~~i~~~~--~~~~~eel~~~y~-g~-~~g~ 301 (388)
T 3prh_A 229 KSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVKF--DKENKPGVSNLLTIYSIL--GNTTIEELEAKYE-GK-GYGE 301 (388)
T ss_dssp TTCSSTTSCCBTTCCHHHHHHHHHT-CCCCSSCCCCC--CTTTCHHHHHHHHHHHHH--HTCCHHHHHHHTT-TC-CHHH
T ss_pred CCCCCCCCeeecCCCHHHHHHHHhh-ccCCCCCcccC--CCCCCCCcchHHHHHHhc--CCCcHHHHHHHHc-CC-CHHH
Confidence 9997 6899999999999999999 99998655443 357899999999999998 5678999999999 76 9999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhHH-HHHHHHhc
Q 015582 363 VKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAV 396 (404)
Q Consensus 363 lK~~La~~i~~~l~~~r~~~~~~~~~-~~~~~~~~ 396 (404)
||+.||+.|+++|+|+|++|++++++ +|++++..
T Consensus 302 lK~~lae~l~~~l~pirer~~~~~~~~~l~~il~~ 336 (388)
T 3prh_A 302 FKGDLAEVVVNALKPIQDRYYELIESEELDRILDE 336 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 99999999999999999999998743 68887764
No 12
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=1.6e-62 Score=493.21 Aligned_cols=295 Identities=22% Similarity=0.313 Sum_probs=263.1
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC--C
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~--~ 136 (404)
-.|++|| +..+.+.+.|.+.+++|+++++|+||+||| +|||||+++++.++|||++ |+.++++|||+||++.++ .
T Consensus 10 ~~l~~r~-~~e~~~~~~L~~~l~~~~~~~iy~G~~PTg-~lHlG~l~~l~~~~~lQ~~-G~~~~~~iaD~~a~~~~ps~~ 86 (364)
T 2cya_A 10 FNRIARN-TVEIVTEEELKGLLASGARIKGYIGYEPSG-VAHIGWLVWMYKVKDLVEA-GVDFSVLEATWHAYINDKLGG 86 (364)
T ss_dssp HHHHHTT-CSEEETHHHHHHHHHHCSCCEEEEEECCCS-SCBTHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTGGGG
T ss_pred HHHHHcC-chhcCCHHHHHHHHhcCCCCEEEeccCCCC-CccHhHHHHHHHHHHHHHC-CCCEEEEEeCcchhhCCCCCC
Confidence 4788999 777778888888899889999999999998 7999998899899999996 788999999999998763 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCcc-chHHHHHHHHhhcCHHHHHHhh---CCC---CCccccccccc
Q 015582 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT---GEDHIGKVSFP 209 (404)
Q Consensus 137 ~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~-~~~~~~~~l~~~~t~~~~~~~~---g~~---~~~~~g~~~Yp 209 (404)
+++++++++.+++++|+|||+||++++||.||+|+.+ .+|..++++++++|+++|+++. ++. .++++|+|+||
T Consensus 87 ~~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~~~~i~~g~~~YP 166 (364)
T 2cya_A 87 DMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYP 166 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHHHHHHHTSCHHHHHTTC------CCGGGSCTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhcchHHHHHHHHHHCcCcHHHHHcCchhhhhhcCCCCccchhhhhH
Confidence 9999999999999999999999999999999999865 5788889999999999999763 332 24789999999
Q ss_pred cccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCC-----------
Q 015582 210 PVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG----------- 278 (404)
Q Consensus 210 llQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G----------- 278 (404)
+|| || ||+.++++ ++|+|.||+||++++||+|+|+|+++|..+++++||+|+|
T Consensus 167 ~LQ-----aa--------Dil~~~~~---~v~~G~DQ~~~~~l~rdla~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~ 230 (364)
T 2cya_A 167 LMQ-----VS--------DIFYMDLD---IALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEI 230 (364)
T ss_dssp HHH-----HH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEECCCBCSSCC----------
T ss_pred HHH-----Hh--------hHHhcCCC---EEeccchHHHHHHHHHHHHHHcCCCCceeeccceeeCCCcccccccccccc
Confidence 999 99 99999884 7999999999999999999999999999999999999997
Q ss_pred ----CCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcC-------------
Q 015582 279 ----ETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE------------- 341 (404)
Q Consensus 279 ----~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~------------- 341 (404)
+|+|||||+++++|||+|+|++|++||++ |||++.. ++.+.+++|+++|+.
T Consensus 231 ~~~~~g~KMSKS~~~~~I~L~d~p~~i~~Ki~~-a~td~~~-----------~~~~~v~~~~~~~~f~~~~~~~~i~r~~ 298 (364)
T 2cya_A 231 DDVLAEVKMSKSKPETAVFVVDSDDDIRRKIRK-AYCPAKQ-----------VQGNPVLEIARYILFARDGFTLRVDRPA 298 (364)
T ss_dssp ------CBCCSSSGGGSCBTTCCHHHHHHHHHT-SCCCTTC-----------CTTCHHHHHHHHTTTTSTTCCEECC---
T ss_pred cccccccccCCCCCCCEeeccCCHHHHHHHHHh-CcCCCCC-----------CCCCcHHHHHHHHhcccccCceeeeccc
Confidence 57999999888899999999999999999 9999754 344567899988752
Q ss_pred ------ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHH
Q 015582 342 ------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 384 (404)
Q Consensus 342 ------~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~ 384 (404)
+.+++++|+++|.+|+++++++|+.||++|+++|+|+|++|++
T Consensus 299 ~~G~~~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~ 347 (364)
T 2cya_A 299 KYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG 347 (364)
T ss_dssp -----CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2358999999999999999999999999999999999999994
No 13
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-62 Score=495.22 Aligned_cols=297 Identities=21% Similarity=0.302 Sum_probs=266.8
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhc-hHHHhhHHHHHhhCCCeEEEEccCcccccccC--
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh-~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 135 (404)
-.|++||++..+.+.+.|++.+++|+++++|+||+||| +||||| +++++.++|||++ |+.++++|||+||++.++
T Consensus 7 ~~l~~r~~~~e~~~~~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~yl~~l~~~~~lQ~~-G~~~~~~iaD~ha~~~~~~g 84 (375)
T 2cyc_A 7 INLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISG-YIHLGTGLMAGAKIADFQKA-GIKTRVFLADWHSWINDKLG 84 (375)
T ss_dssp HHHHHSTTEEEEETHHHHHHHHHHTCCCBEEEEECCCS-CCBHHHHHHHHHHHHHHHHT-TCBCEEEECHHHHHHTTGGG
T ss_pred HHHHhcCCceeecCHHHHHHHHhcCCCcEEEeCCCCCC-CcCchHHHHHHHHHHHHHHC-CCcEEEEecCcEEEcCCCCC
Confidence 47889998888888999999999989999999999998 999999 7778888999996 788899999999998763
Q ss_pred CCHHHHHHHH-HHHH----HHHHHcCCCCCceEEEeCCccCccc-hHHHHHHHHhhcCHHHHHHhh---CCC--CCcccc
Q 015582 136 LSVEESQRLA-RENA----KDIIACGFDVTKTFIFSDFDYVGGA-FYKNMVKVAKCVTYNKVVGIF---GFT--GEDHIG 204 (404)
Q Consensus 136 ~~~e~i~~~~-~~~~----~~ilA~G~dp~kt~i~~~s~~~~~~-~~~~~~~l~~~~t~~~~~~~~---g~~--~~~~~g 204 (404)
.+++++++++ .+++ ++|+|||+||+++.||.||+|+++. +|..+.++++++|+++|.++. ++. +++|+|
T Consensus 85 ~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~k~r~~~~~i~~g 164 (375)
T 2cyc_A 85 GDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDFA 164 (375)
T ss_dssp GCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHHHTTSBHHHHHHTGGGGTCCCCTTCBTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhhhhhHHHHHHHHHhceeEHHHHhccchhhhhccCCCCChH
Confidence 6899999999 8888 8899999999999999999999764 788889999999999999765 432 358999
Q ss_pred ccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCC--------C-CcceeecccccC
Q 015582 205 KVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--------H-KPALIESSFFPA 275 (404)
Q Consensus 205 ~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~--------~-kp~~l~~~~lp~ 275 (404)
+|+||+|| || ||+.++++ ++|||.||+||++++||+|+|+|+ . +|.++++++||+
T Consensus 165 ~f~YP~LQ-----aa--------Dil~~~~~---~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~g 228 (375)
T 2cyc_A 165 KLIYPMMQ-----VA--------DIFYQGVT---IAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLG 228 (375)
T ss_dssp HHHHHHHH-----HH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBC
T ss_pred HHHHHHHH-----HH--------HHHHhCCC---eecccchHHHHHHHHHHHHHHhCCcccccccccCccEEeccccccC
Confidence 99999999 99 99999874 899999999999999999999998 4 788889999999
Q ss_pred CCCC----------------CCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhh
Q 015582 276 LQGE----------------TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF 339 (404)
Q Consensus 276 L~G~----------------~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f 339 (404)
|+|+ ++|||||.|+++|||+|+|++|++||++ |||++. +++.+.+++|+++|
T Consensus 229 L~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI~~-A~t~~~-----------~~~~~~v~~~~~~~ 296 (375)
T 2cyc_A 229 LQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAR-----------EVRYNPVLDWVEYI 296 (375)
T ss_dssp SSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHHHH-SCCCTT-----------CCSSCHHHHHHHHT
T ss_pred CCCcccccccchhhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHHHH-hcCCCC-----------CCCCChHHHHHHHH
Confidence 9996 4899999988899999999999999999 999974 34556778999987
Q ss_pred c-CC------------------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 015582 340 L-ED------------------DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 385 (404)
Q Consensus 340 ~-~~------------------~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~ 385 (404)
+ .+ .+++++|+++|.+|+++++++|+.||++|+++|+|+|+++++.
T Consensus 297 ~f~~~~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~ 361 (375)
T 2cyc_A 297 IFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKH 361 (375)
T ss_dssp TTSSSSCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred hcCCCCcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5 22 5679999999999989999999999999999999999999954
No 14
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=4.8e-62 Score=482.12 Aligned_cols=280 Identities=17% Similarity=0.207 Sum_probs=247.6
Q ss_pred ceEEEEecCCCCCCcchhchHH-HhhHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015582 85 KFYLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (404)
Q Consensus 85 ~~~iytG~~PTg~~lHlGh~v~-~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (404)
..++|+||+||| +||||||+| +...++||+ |+.++++|||+||++.+ .+++++++++++++++|+|||+||++++
T Consensus 3 ~~~vysG~~PTg-~lHlG~~lg~l~~~~~lQ~--g~~~~~~iaD~ha~~~~-~~~~~l~~~~~~~~~~~lA~Gldp~k~~ 78 (322)
T 3tzl_A 3 AMRVLTGLQPSG-DLHIGNYFGAIKQMVDAQE--KSQMFMFIANYHAMTSS-QDGEKLKQNSLKAAAAFLSLGIDPQKSV 78 (322)
T ss_dssp -CCBEEEECCSS-CCBHHHHHHTHHHHHHTTT--TSCCEEEECHHHHTTTC-CCHHHHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred ceEEEEccCCCc-cccHHHHHHHHHHHHHHhc--CCCEEEEEecCeeecCC-CCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 468999999998 899999997 556778998 67788889999999854 5899999999999999999999999999
Q ss_pred EEeCCccCccchHHHHHHHHhhcCHHHHH------HhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCcc
Q 015582 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVV------GIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLR 237 (404)
Q Consensus 164 i~~~s~~~~~~~~~~~~~l~~~~t~~~~~------~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~ 237 (404)
||.||+|++ .....+.++++++++++. .++++.+++|+|+|+||+|| || ||+.+++
T Consensus 79 i~~qS~~~~--~~el~~~l~~~~~~~~l~r~~~~K~~~~~~~~~~~g~f~YP~LQ-----Aa--------Dil~~~~--- 140 (322)
T 3tzl_A 79 FWLQSDVKE--VMELYWILSQFTPMGLLERAHSYKDKVAKGLSASHGLFSYPVLM-----AA--------DILLFDT--- 140 (322)
T ss_dssp EEEGGGCTH--HHHHHHHHGGGCBHHHHHSCHHHHHHHHTTCCCBHHHHHHHHHH-----HH--------HHHHTTC---
T ss_pred EEECCcchh--HHHHHHHHhccCcHHHHHhhhHHHHHHccCCCCchHHHHHHHHH-----HH--------HHHHhCC---
Confidence 999999975 334445588888888764 34566678999999999999 99 9999887
Q ss_pred cccccccCchhHHHHHHHHHhHhCC------CCcceee---cccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccc
Q 015582 238 CLIPCAIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKY 308 (404)
Q Consensus 238 ~~vp~G~DQd~~~~l~rdla~r~~~------~kp~~l~---~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~ky 308 (404)
|+||||.||+||+++|||+|+|+|+ ++|..++ +++||+|+| +|||||.+| +|||+|+|++|++||++
T Consensus 141 ~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G--~KMSKS~~n-~I~L~d~p~~i~~KI~~- 216 (322)
T 3tzl_A 141 RIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDG--AKMSKSYQN-TIDIFSSEKTLKKQISS- 216 (322)
T ss_dssp SEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTS--SBCCGGGTC-CCBSSCCHHHHHHHHHT-
T ss_pred cEEEeccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCC--CcCCCCCCC-ceecCCCHHHHHHHHHh-
Confidence 6899999999999999999999985 5665554 799999998 899999998 99999999999999999
Q ss_pred cccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHH
Q 015582 309 AFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE 388 (404)
Q Consensus 309 A~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~ 388 (404)
|+|++..+. ..+||+++++++|+++|+ +++++++|+++|++|.+++++||+.||++|+++|+|+|++|++++++
T Consensus 217 a~td~~~~~-----~~~~~~~~~v~~~~~~~~-~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~ 290 (322)
T 3tzl_A 217 IVTDSTALE-----DPKDHENCNIFKIAKLFL-DESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEK 290 (322)
T ss_dssp CCCCCCCTT-----SCCCGGGCHHHHHHGGGC-CHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHS
T ss_pred ccCCCcccc-----CCCCCcchhHHHHHHHhC-ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 999997652 246899999999999996 68899999999999889999999999999999999999999999864
Q ss_pred --HHHHHHhc
Q 015582 389 --MVDAFMAV 396 (404)
Q Consensus 389 --~~~~~~~~ 396 (404)
+|++++..
T Consensus 291 ~~~l~~il~~ 300 (322)
T 3tzl_A 291 PSHLKEILDF 300 (322)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 89998865
No 15
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=1.1e-61 Score=484.45 Aligned_cols=304 Identities=19% Similarity=0.307 Sum_probs=248.0
Q ss_pred hhHHhcCc--ccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhc-hHHHhhHHHHHhhCCCeEEEEccCcccccccC
Q 015582 59 HVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135 (404)
Q Consensus 59 ~~l~~Rgi--~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh-~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~ 135 (404)
-.+++||+ +++|++++.+ +++++++++|+||+||| +||||| +++++.++|||++ |+.++++|||+||++.++
T Consensus 15 ~~l~~r~~~e~~~~~~L~~~---L~~~~~~~vy~G~~PTg-~lHlGhyl~~l~~~~~lQ~~-G~~~~~~i~D~~a~~~~~ 89 (348)
T 2j5b_A 15 LTQLLSIAEECETLDRLKQL---VDSGRIFTAYNGFEPSG-RIHIAQALITVMNTNNMIEC-GGQMIIYIADWFAKMNLK 89 (348)
T ss_dssp HHHHHTTCSEESCHHHHHHH---HHHTCCEEEEEEECCCS-SCBHHHHHHHHHHHHHHHHT-TEEEEEEECHHHHHHTTG
T ss_pred HHHHHcCcccccCHHHHHHH---HhcCCCCEEEeccCCCC-CCchhHHHHHHHHHHHHHHc-CCcEEEEeccchhhhCCC
Confidence 46788996 3444445544 45578999999999997 999999 6788889999996 888999999999998765
Q ss_pred --CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC-cc-chHHHHHHHHhhcCHHHHHHh---hCCC--CCcccccc
Q 015582 136 --LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG-AFYKNMVKVAKCVTYNKVVGI---FGFT--GEDHIGKV 206 (404)
Q Consensus 136 --~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~-~~-~~~~~~~~l~~~~t~~~~~~~---~g~~--~~~~~g~~ 206 (404)
.+++++++++++++++|+|||+||+++.||.||+|. .+ .+|..+.++++++|+++|+++ .++. +++|+|+|
T Consensus 90 ~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~~~~~~~~~v~~~~~~~~m~~~~~~~~r~~~~~i~~g~f 169 (348)
T 2j5b_A 90 MNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQI 169 (348)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-----------------C
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhhHHHHHHHHHHhheeHHHHHhhhhhhhhhccCCcChHHH
Confidence 689999999999999999999999999999999995 22 678888899999999999874 3442 36799999
Q ss_pred ccccccchhhhhcCCCCCCCCccccC---CCCcccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCC
Q 015582 207 SFPPVQEMIYKAVPSFPSSFPHLFSG---KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKM 283 (404)
Q Consensus 207 ~YpllQ~~~~~aa~~~~~~~~Di~~~---~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KM 283 (404)
+||+|| || ||+.+ ++ +++|+|.||+||++++||+|+|+|+..|.++++++||+|+|+.+||
T Consensus 170 ~YP~lQ-----aa--------Dil~~~~~~~---~~~~~G~DQ~~~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KM 233 (348)
T 2j5b_A 170 FYPCMQ-----AA--------DVFELVPEGI---DICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKM 233 (348)
T ss_dssp CHHHHH-----HH--------HHHHSSTTCC---SEECCBGGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCC
T ss_pred hhHHHH-----HH--------HHHHHhcCCC---cEEEeccChHHHHHHHHHHHHHhCCCCceeecCccccCCCCccccc
Confidence 999999 99 99988 65 5799999999999999999999999889999999999997645899
Q ss_pred CCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhc-----------CChHHHHHHHHH
Q 015582 284 SASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-----------EDDAELEHIKKE 352 (404)
Q Consensus 284 SkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~-----------~~~~eleei~~~ 352 (404)
|||.+|++|||+|+|++|++||++ |+|++.. ++ +.++.|+.++. .+.+++++|+++
T Consensus 234 SKS~~~~~I~L~d~p~~i~kKI~k-a~td~~~-----------~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~el~~~ 300 (348)
T 2j5b_A 234 SKSDPQGAIFMDDTEQEVSEKISR-AYCTDET-----------FD-NPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQED 300 (348)
T ss_dssp STTCGGGSCBTTCCHHHHHHHHHH-SCCCSSS-----------TT-CHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHH
T ss_pred ccCCCCCeEeecCCHHHHHHHHhc-ccCCCCC-----------CC-CchHhHHHHhhhhhhcccccccCCcchHHHHHHH
Confidence 999987799999999999999999 9999753 33 44566665531 145789999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhh----HHHHHHHHhcCC
Q 015582 353 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT----DEMVDAFMAVRP 398 (404)
Q Consensus 353 ~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~----~~~~~~~~~~~~ 398 (404)
|+ | ++++++|+.||++|+++|+|+|+++++.. .+.|++|+..||
T Consensus 301 ~~-~-~~~~~~K~~la~~l~~~l~pir~~~~~~~~~~~~~~v~~~~~~~~ 348 (348)
T 2j5b_A 301 FS-S-MNKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQQPSK 348 (348)
T ss_dssp HT-T-SCHHHHHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHTCC---
T ss_pred Hc-c-cCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCCC
Confidence 99 6 89999999999999999999999976432 347777776553
No 16
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=6.8e-62 Score=483.55 Aligned_cols=284 Identities=18% Similarity=0.252 Sum_probs=248.2
Q ss_pred eEEEEecCCCCCCcchhchHHHhhHHH--HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015582 86 FYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (404)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~v~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (404)
.++|+|++||| .||||||+|++ .+| ||+. +.++++|||+||++. ..+++++++++++++++|+|||+||+|++
T Consensus 7 ~~v~sG~~PTG-~lHLGhy~g~l-~~~~~lQ~~--~~~~~~iaD~ha~~~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~ 81 (341)
T 3sz3_A 7 PIVLSGVQPSG-ELSIGNYLGAL-RQWQQMQDD--YDCQYCVVDLHAITV-RQDPQALHEATLDALAICLAVGVDPKKST 81 (341)
T ss_dssp CEEEEEECSSS-CCBHHHHHHTG-GGHHHHHHH--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred CEEEeCcCCCC-cccHHHHHHHH-HHHHHHHhc--CeEEEEEecceeEcC-CCCHHHHHHHHHHHHHHHHHcCCChhhcE
Confidence 47999999998 69999999986 555 9985 568888999999986 68999999999999999999999999999
Q ss_pred EEeCCccCcc--chHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCc
Q 015582 164 IFSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHL 236 (404)
Q Consensus 164 i~~~s~~~~~--~~~~-----~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~ 236 (404)
||.||+|+++ .+|. .+.++.|+.++++...+++ +++|+|+|+||+|| || ||+.+++
T Consensus 82 i~~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQ-----aa--------Dil~~~a-- 144 (341)
T 3sz3_A 82 LFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA--NDVNAGLFGYPVLM-----AA--------DILLYGA-- 144 (341)
T ss_dssp EEEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG--GGCCHHHHHHHHHH-----HH--------HHHTTTC--
T ss_pred EEeccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc--CCCChhhHHhHHHH-----HH--------HHHHcCC--
Confidence 9999999853 2332 2456777788877776653 57899999999999 99 9999987
Q ss_pred ccccccccCchhHHHHHHHHHhHhCC---------CCcceee---cccccCCCCCCCCCCCCCC--CCeeeecCCHHHHH
Q 015582 237 RCLIPCAIDQDPYFRMTRDVAPRIGY---------HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIK 302 (404)
Q Consensus 237 ~~~vp~G~DQd~~~~l~rdla~r~~~---------~kp~~l~---~~~lp~L~G~~~KMSkS~~--nsaI~L~D~~~~i~ 302 (404)
|+||||.||+||+++|||+|+|+|+ +.|..+. +++||||+++.+|||||+| +|+|||+|+|++|+
T Consensus 145 -d~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~ 223 (341)
T 3sz3_A 145 -HQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSII 223 (341)
T ss_dssp -SEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHH
T ss_pred -CEEEeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHH
Confidence 5899999999999999999999872 2454333 5799999753479999998 68999999999999
Q ss_pred HHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHH
Q 015582 303 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVAR 382 (404)
Q Consensus 303 ~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~ 382 (404)
+||++ |+||+..+.+++++.+++|++|++++|+.+| +++++++|+++|+ |.+++++||+.||+.|+++|+|+|++|
T Consensus 224 kKI~~-a~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~--~~~~~e~i~~~~~-g~~~~g~~K~~lae~i~~~l~pirer~ 299 (341)
T 3sz3_A 224 KKINK-AQTDAETPPRIAYDVENKAGIANLMGLYSAA--TGKTFAEIEAQYA-GVEMYGPFKKDVGEAVVAMLEPVQAEY 299 (341)
T ss_dssp HHHHT-CCCCCCSSCCCCCCTTTCHHHHHHHHHHHHH--HCCCHHHHHHHTT-TCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhh-ccCCCCCCcccccCCCCCcchhHHHHHHHHc--CCccHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999988777788889999999999999999 5678999999999 668999999999999999999999999
Q ss_pred HHhhHH--HHHHHHhc
Q 015582 383 AAVTDE--MVDAFMAV 396 (404)
Q Consensus 383 ~~~~~~--~~~~~~~~ 396 (404)
+++.++ +|++++..
T Consensus 300 ~~~~~~~~~l~~il~~ 315 (341)
T 3sz3_A 300 QRIRNDREYLNSVMRD 315 (341)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHH
Confidence 999853 89988865
No 17
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-61 Score=479.49 Aligned_cols=286 Identities=21% Similarity=0.241 Sum_probs=249.7
Q ss_pred CceEEEEecCCCCCCcchhchHHHh-hHHHHHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015582 84 EKFYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (404)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~v~~~-~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt 162 (404)
...++|+|++||| +||||||+|++ ..++||++ |+.++++|||+||++.+..+++++++++++++++|+|||+||+++
T Consensus 11 ~~~~v~~G~~PTG-~lHLGn~~g~l~~~~~lQ~~-G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~ 88 (340)
T 2g36_A 11 HHMRILSGMRPTG-KLHIGHLVGALENWVKLQEE-GNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKS 88 (340)
T ss_dssp -CCEEEEEECCCS-SCBHHHHHTHHHHHHHHHHT-TCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTS
T ss_pred CCCeEEEeeCCCC-cccHHhHHHHHHHHHHHHHC-CCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHe
Confidence 4578999999998 99999999986 45559996 678888899999998766777789999999999999999999999
Q ss_pred EEEeCCccCccchHHHHHHHHhhcCHHHHHHhh---------CCCCCccccccccccccchhhhhcCCCCCCCCccccCC
Q 015582 163 FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF---------GFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGK 233 (404)
Q Consensus 163 ~i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~---------g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~ 233 (404)
+||.||+|++ +....+.+++.+|++++.+.. +..+++|+|+|+||+|| || ||+.++
T Consensus 89 ~if~qS~~~~--~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQ-----Aa--------Dil~~~ 153 (340)
T 2g36_A 89 VIFVQSGVKE--HAELALLFSMIVSVSRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQ-----AA--------DILIYK 153 (340)
T ss_dssp EEEEGGGCTH--HHHHHHHHHTTSCHHHHHTCHHHHTC-------CCCSHHHHTHHHHH-----HH--------HHHTTT
T ss_pred EEEECCchHH--HHHHHHHHHccCCHHHHHHhHHHHhHHHHhccCCCCChHHhhhHHHH-----Hh--------hHHHhC
Confidence 9999999974 344445588888888876532 23457899999999999 99 999988
Q ss_pred CCcccccccccCchhHHHHHHHHHhHhCC------CCccee--ecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHh
Q 015582 234 DHLRCLIPCAIDQDPYFRMTRDVAPRIGY------HKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 305 (404)
Q Consensus 234 ~~~~~~vp~G~DQd~~~~l~rdla~r~~~------~kp~~l--~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI 305 (404)
+ |+||||.||+||++++||+|+|+|+ ++|..+ ++++||+|+| +|||||.+| +|||+|+|++|++||
T Consensus 154 ~---~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG--~KMSKS~~n-~I~L~dsp~~i~~Ki 227 (340)
T 2g36_A 154 A---EGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDG--RKMSKSYGN-IINLEISEKELEQTI 227 (340)
T ss_dssp C---SEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTS--SCCCGGGTC-CCBTTCCHHHHHHHH
T ss_pred C---CEEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCc--cccCCCCCC-eEeeeCCHHHHHHHH
Confidence 7 5899999999999999999999862 567644 4799999997 599999998 899999999999999
Q ss_pred ccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 015582 306 NKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 385 (404)
Q Consensus 306 ~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~ 385 (404)
++ |+|++.. +++..|++|++|++++|+++|+.+.+++++|+++|++|.+++++||+.||++|+++|+|+|++|+++
T Consensus 228 ~~-a~td~~~---~~~~~~~~p~~~~v~~~~~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~ 303 (340)
T 2g36_A 228 LR-MMTDPAR---VRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKI 303 (340)
T ss_dssp HT-CCCCTTC---SSTTSCCCGGGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-CCCCccc---ccccCCCCCchhHHHHHHHHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 9999854 5677789999999999999997678888999999999989999999999999999999999999999
Q ss_pred hHH--HHHHHHhc
Q 015582 386 TDE--MVDAFMAV 396 (404)
Q Consensus 386 ~~~--~~~~~~~~ 396 (404)
+++ +|++++..
T Consensus 304 ~~~~~~~~~il~~ 316 (340)
T 2g36_A 304 DEDPHYVDDVIME 316 (340)
T ss_dssp HHSTTHHHHHHHH
T ss_pred hcChHHHHHHHHH
Confidence 985 89988865
No 18
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=8.8e-62 Score=480.58 Aligned_cols=290 Identities=17% Similarity=0.205 Sum_probs=252.7
Q ss_pred hhhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC--
Q 015582 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (404)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 135 (404)
.+.|++||++++|+|.+.|++.++ ++++++|+||+|||.|||||||++++.++|||++ |+.++++|||+||++..+
T Consensus 7 ~~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~~PTg~slHlGh~l~l~~~~~lQ~~-g~~~~~~i~D~~a~~~dp~g 84 (322)
T 2yxn_A 7 IKQLQERGLVAQVTDEEALAERLA-QGPIALVCGFDPTADSLHLGHLVPLLCLKRFQQA-GHKPVALVGGATGLIGDPSF 84 (322)
T ss_dssp HHHHHHTTCCSEESSHHHHHHHHH-HSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTT
T ss_pred HHHHHHCCceeeeCCHHHHHHHHc-CCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHc-CCcEEEEEccceeeecCCCC
Confidence 378999999999999999999998 5789999999999977999999999999999996 667788899999998543
Q ss_pred -------CCHHHHHHHH---HHHHHHHHHcCCCCCceEEEeCCccCccchHHHHHH-HHhhcCHHHHH------HhhCC-
Q 015582 136 -------LSVEESQRLA---RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVV------GIFGF- 197 (404)
Q Consensus 136 -------~~~e~i~~~~---~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~-l~~~~t~~~~~------~~~g~- 197 (404)
++.+++++|+ ++++++|+|||+||++++||.||+|+.+..+..+++ +++++++++|. +++++
T Consensus 85 ~~~~R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~ 164 (322)
T 2yxn_A 85 KAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE 164 (322)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC
Confidence 4999999999 889999999999999999999999986655556664 66666666554 45654
Q ss_pred CCCccccccccccccchhhhhcCCCCCCCCccccCCCCccccccc-ccCchhHHHHHHHHHhHhCCCCcceeecccccCC
Q 015582 198 TGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPC-AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPAL 276 (404)
Q Consensus 198 ~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~-G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L 276 (404)
.+++|+|+|+||+|| || ||+.+..+++|.||+ |.||+||++++||+|+|+|..++..++.++||++
T Consensus 165 ~~~is~g~f~YP~LQ-----aa--------Dil~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gl 231 (322)
T 2yxn_A 165 DQGISFTEFSYNLLQ-----GY--------DFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKA 231 (322)
T ss_dssp TCCCCHHHHTHHHHH-----HH--------HHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCT
T ss_pred CCCccchhhhHHHHH-----HH--------HHHHHhccCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCC
Confidence 357899999999999 99 999873223456665 9999999999999999999988888899999999
Q ss_pred CCCCCCCCCCCCCCeeeecC---CHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcC-ChHHHHHHHHH
Q 015582 277 QGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKE 352 (404)
Q Consensus 277 ~G~~~KMSkS~~nsaI~L~D---~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~-~~~eleei~~~ 352 (404)
+| +|||||.+| +|||+| +|+++++||++ + +.+.+++|+++|+. +++++++|+++
T Consensus 232 dG--~KMSKS~~n-~I~L~d~~tsp~~~~~ki~~-~------------------~d~~v~~~l~~~~~~~~~~i~~l~~~ 289 (322)
T 2yxn_A 232 DG--TKFGKTEGG-AVWLDPKKTSPYKFYQFWIN-T------------------ADADVYRFLKFFTFMSIEEINALEEE 289 (322)
T ss_dssp TS--CBTTEETTE-ECBSSTTTSCHHHHHHHHHT-C------------------CHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred Cc--ccccCCCCC-eeeccCCCCCHHHHHHHHhC-C------------------CcccHHHHHHHHHcCCHHHHHHHHHH
Confidence 97 799999998 999999 99999999998 3 12456899999874 89999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 015582 353 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 385 (404)
Q Consensus 353 ~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~ 385 (404)
|++|. +++++|+.||++|++++||+++++++.
T Consensus 290 ~~~g~-~~~~~K~~La~~i~~~l~~~~~~~~a~ 321 (322)
T 2yxn_A 290 DKNSG-KAPRAQYVLAEQVTRLVHGEEGLQAAK 321 (322)
T ss_dssp HHHHS-SCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHhh
Confidence 99986 999999999999999999999998764
No 19
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=6.3e-61 Score=479.27 Aligned_cols=288 Identities=26% Similarity=0.297 Sum_probs=251.1
Q ss_pred CCceEEEEecCCCCCCcchhchHHHhhHHH--HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 015582 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVT 160 (404)
Q Consensus 83 ~~~~~iytG~~PTg~~lHlGh~v~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~ 160 (404)
++++++|+||+||| .||||||+|++ .+| ||+. +.++++|||+||++.+..+++++++|+++++++|+|||+||+
T Consensus 20 ~~~~~vysG~~PTG-~lHLGn~~g~l-~~~~~lQ~~--~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~ 95 (351)
T 1yi8_B 20 PARPRVLTGDRPTG-ALHLGHLAGSL-QNRVRLQDE--AELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQ 95 (351)
T ss_dssp -CCSEEEEEECCSS-CCBHHHHHHTH-HHHHHHTSS--SEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCcEEEEeeCCCC-CccHHHHHHHH-HHHHHHHHh--CCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChh
Confidence 46789999999998 69999999985 777 9986 456778999999997779999999999999999999999999
Q ss_pred ceEEEeCCccCccc--hH--H---HHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCC
Q 015582 161 KTFIFSDFDYVGGA--FY--K---NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGK 233 (404)
Q Consensus 161 kt~i~~~s~~~~~~--~~--~---~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~ 233 (404)
+++||.||+|+++. .| . .+.++.|+.|+++..++.||.+++|+|+|+||+|| || ||+.++
T Consensus 96 k~~i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQ-----Aa--------Dil~~~ 162 (351)
T 1yi8_B 96 KTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQ-----AA--------DIAAFG 162 (351)
T ss_dssp TEEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHH-----HH--------HHHHHT
T ss_pred hcEEEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHH-----Hh--------hHHhcC
Confidence 99999999998521 11 0 13455555555555566677788999999999999 99 999988
Q ss_pred CCcccccccccCchhHHHHHHHHHhHhC------CCCcceee--cccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHh
Q 015582 234 DHLRCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIE--SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 305 (404)
Q Consensus 234 ~~~~~~vp~G~DQd~~~~l~rdla~r~~------~~kp~~l~--~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI 305 (404)
+ |+||+|.||+||++++||+|+|+| +++|..+. +++||+|+| ++|||||.+| +|||+|+|++|++||
T Consensus 163 ~---~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki 237 (351)
T 1yi8_B 163 A---TLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGDSADEVARKV 237 (351)
T ss_dssp C---SEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTS-SSCCCTTTTC-CCBTTCCHHHHHHHH
T ss_pred C---CEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCC-ccccCCCCCC-eecCCCCHHHHHHHH
Confidence 7 589999999999999999999986 46786553 789999998 3599999999 999999999999999
Q ss_pred ccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 015582 306 NKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 385 (404)
Q Consensus 306 ~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~ 385 (404)
++ |+|++. ++++..|+||+.++++.|+++|+.+.+++++|+++|++|.++|+++|+.||++|+++|+|+|++|+++
T Consensus 238 ~~-a~td~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~ 313 (351)
T 1yi8_B 238 MG-MYTDPG---HLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEY 313 (351)
T ss_dssp HT-CCCCTT---CCSTTSCCCCTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-cCCCcc---cccccCCCCCccchHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99 999985 35677899999999999999998778889999999999999999999999999999999999999999
Q ss_pred hHH--HHHHHHhc
Q 015582 386 TDE--MVDAFMAV 396 (404)
Q Consensus 386 ~~~--~~~~~~~~ 396 (404)
+++ +|++++..
T Consensus 314 ~~~~~~l~~il~~ 326 (351)
T 1yi8_B 314 ERDPDAVLRFVTE 326 (351)
T ss_dssp HTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHH
Confidence 874 79988865
No 20
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=1.2e-60 Score=480.38 Aligned_cols=303 Identities=16% Similarity=0.200 Sum_probs=258.9
Q ss_pred hhhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHH-hhHHHHHhhCCCeEEEEccCcccccccC-
Q 015582 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPF-MFTKYLQDAFKVPLVIQLTDDEKCMWKN- 135 (404)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~-~~~~~lQ~~~~~~v~I~I~D~~a~~~~~- 135 (404)
.-.+++||+.. +.+.+.|.+.+++|+++++|+||+||| +|||||.+.. +.+++||++ |+.++++|||+||++.++
T Consensus 30 ~~~li~r~~~e-~~~~~~L~~~L~~~~~~~iy~G~~PTg-~lHlG~gvl~~~~~~~lQ~~-G~~~~~lIaD~ha~i~d~~ 106 (373)
T 3vgj_A 30 ILNDILSISSE-CIQPDELRVKLLLKRKLICYDGFEPSG-RMHIAQGLLKSIIVNKLTSN-GCTFIFWIADWFAHLNNKM 106 (373)
T ss_dssp HHHHHHHHCSE-EECHHHHHHHHHHCSSCEEEEEECCCS-SCBHHHHHHHHHHHHHHHTT-TCEEEEEECHHHHHHTTGG
T ss_pred HHHHHHcCcce-ecCHHHHHHHHhcCCCceEEeCCCCCC-CceehhhHHHHHHHHHHHHC-CCcEEEEEecceeEecCCC
Confidence 35678899875 444566667777888999999999998 8999997643 347889996 889999999999998753
Q ss_pred -CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC-c--cchHHHHHHHHhhcCHHHHHHhh---CCC--CCcccccc
Q 015582 136 -LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-G--GAFYKNMVKVAKCVTYNKVVGIF---GFT--GEDHIGKV 206 (404)
Q Consensus 136 -~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~-~--~~~~~~~~~l~~~~t~~~~~~~~---g~~--~~~~~g~~ 206 (404)
.+.+++++++.++++.|+|+|+||+++.||.||+|+ + ..+|..+.++++++|+++|+++. ++. +++++|+|
T Consensus 107 ~~~~~~i~~~~~~~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~~~~~~~g~f 186 (373)
T 3vgj_A 107 SGDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSEGEENYCSQI 186 (373)
T ss_dssp GGCHHHHHHHHHHHHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCTTSCCBTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhccCCCChHHH
Confidence 789999999999999999999999999999999998 3 35788888999999999999853 333 47899999
Q ss_pred ccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCC-CcceeecccccCCCCCCCCCCC
Q 015582 207 SFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSA 285 (404)
Q Consensus 207 ~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~-kp~~l~~~~lp~L~G~~~KMSk 285 (404)
+||+|| || ||+.+++| ++|+|.||+||++++||+|+|+|+. +|.++++++||+|++..+||||
T Consensus 187 ~YPlLQ-----aa--------Dil~l~ad---~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSK 250 (373)
T 3vgj_A 187 LYPCMQ-----CA--------DIFFLNVD---ICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSK 250 (373)
T ss_dssp HHHHHH-----HH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCS
T ss_pred HHHHHH-----Hh--------cccccCCc---EEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcC
Confidence 999999 99 99999885 7999999999999999999999986 6888899999999432479999
Q ss_pred CCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchh----HHHHHHhhc-C---------ChHHHHHHHH
Q 015582 286 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI----PVKYLSFFL-E---------DDAELEHIKK 351 (404)
Q Consensus 286 S~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v----~~~~l~~f~-~---------~~~eleei~~ 351 (404)
|+|||+|||+|+|++|++||++ |||++.. .++||.++. +|.++..|. + +++++++|++
T Consensus 251 S~~~~~I~L~D~p~~i~~KI~k-A~td~~~-------~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~~~~~~eel~~ 322 (373)
T 3vgj_A 251 SDENSAIFMDDSESDVNRKIKK-AYCPPNV-------IENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEH 322 (373)
T ss_dssp SSTTCCCBTTCCHHHHHHHHHH-SCCCTTC-------CTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCEEECCHHHHHH
T ss_pred CCCCCeeecCCCHHHHHHHHHh-CcCCCCC-------CCCCcchhhhhhhhhhhhhhhcccccccccCCcCcccHHHHHH
Confidence 9988899999999999999999 9999753 357887653 456665552 1 2468999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhH
Q 015582 352 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 387 (404)
Q Consensus 352 ~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~ 387 (404)
+|++|.++|++||+.||+.|+++|+|+|+++++..+
T Consensus 323 ~~~~g~l~~~dlK~~lae~i~~~l~Pire~~~~~~~ 358 (373)
T 3vgj_A 323 DYVNGFIHPLDLKDNVAMYINKLLQPVRDHFQNNIE 358 (373)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999999999997543
No 21
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=5.2e-61 Score=477.43 Aligned_cols=284 Identities=18% Similarity=0.281 Sum_probs=245.1
Q ss_pred ceEEEEecCCCCCCcchhchHHHhhHHH--HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015582 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (404)
Q Consensus 85 ~~~iytG~~PTg~~lHlGh~v~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt 162 (404)
..++|+|++||| .||||||+|++ .+| ||+. +.++|+|||+||++. ..+++++++++++++++|+|||+||+|+
T Consensus 15 ~~~i~sG~~PTG-~lHLGh~vg~l-~~~~~lQ~~--~~~~~~iaD~hA~t~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~ 89 (346)
T 3n9i_A 15 KPIVFSGAQPSG-ELTIGNYMGAL-RQWVQMQDD--YDCIYCIVDLHAITA-RQDPALLRKRTLDTLALYLACGIDPKKS 89 (346)
T ss_dssp CCEEEEEECSCS-CCBHHHHHHTH-HHHHTTTTT--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHHTCCTTTS
T ss_pred CCEEEECcCCCC-cccHHHHHHHH-HHHHHHHhh--CcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 458999999998 69999999996 677 8984 678888999999986 5899999999999999999999999999
Q ss_pred EEEeCCccCcc--chHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCC
Q 015582 163 FIFSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDH 235 (404)
Q Consensus 163 ~i~~~s~~~~~--~~~~-----~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~ 235 (404)
+||.||+|+++ .+|. .+.++.|+.++++...+.+ +++++|+|+||+|| || ||+.+++
T Consensus 90 ~if~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQ-----Aa--------Dil~~~a- 153 (346)
T 3n9i_A 90 TIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA--ENINAGLFDYPVLM-----AA--------DILLYQT- 153 (346)
T ss_dssp EEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG--GGCBHHHHHHHHHH-----HH--------HHHTTTC-
T ss_pred EEEeccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC--CCCCchhHHhHHHH-----HH--------HHHHhCc-
Confidence 99999999864 2332 1346666666666555432 56899999999999 99 9999987
Q ss_pred cccccccccCchhHHHHHHHHHhHhCC------CCcceee---cccccCCCCCCCCCCCCCCC--CeeeecCCHHHHHHH
Q 015582 236 LRCLIPCAIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNK 304 (404)
Q Consensus 236 ~~~~vp~G~DQd~~~~l~rdla~r~~~------~kp~~l~---~~~lp~L~G~~~KMSkS~~n--saI~L~D~~~~i~~K 304 (404)
|+||||.||+||+++|||+|+|+|+ +.|..+. +++||||+++++|||||++| |+|||+|+|++|++|
T Consensus 154 --d~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kK 231 (346)
T 3n9i_A 154 --NQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKK 231 (346)
T ss_dssp --SEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHH
T ss_pred --eEEEeccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHH
Confidence 6899999999999999999999982 4565554 47999997545799999986 899999999999999
Q ss_pred hccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHH
Q 015582 305 INKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 384 (404)
Q Consensus 305 I~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~ 384 (404)
|++ |||++..+.+++++.+++|++++++.|+..| +++++++|+++|++| .+++||+.|++.|+++|+|+|++|++
T Consensus 232 I~k-A~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~--~~~~~eel~~~y~~~--~~g~lK~~lae~l~~~L~pirer~~~ 306 (346)
T 3n9i_A 232 IKR-AMTDSDEPALIRYDVEKKAGVSNLLDILSGV--TGQSIPELEAQFTGQ--MYGHLKGAVADAVSGMLSELQERYRT 306 (346)
T ss_dssp HHT-CCCCCCSSCCCCCCTTTCHHHHHHHHHHHHH--HCCCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-CcCCCCCCccccCCCCCCCChhHHHHHHHhc--CCccHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999987656667779999999999999988 567899999999876 69999999999999999999999999
Q ss_pred hhHH--HHHHHHhc
Q 015582 385 VTDE--MVDAFMAV 396 (404)
Q Consensus 385 ~~~~--~~~~~~~~ 396 (404)
++++ +|++++..
T Consensus 307 ~~~~~~~l~~il~~ 320 (346)
T 3n9i_A 307 YREDEALLQDVMRE 320 (346)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHH
Confidence 9864 89988865
No 22
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=5.5e-60 Score=470.28 Aligned_cols=284 Identities=20% Similarity=0.209 Sum_probs=238.0
Q ss_pred EEEEecCCCCCCcchhchHHHh-hHHHHHhhCCCeEEEEccCccccccc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015582 87 YLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFI 164 (404)
Q Consensus 87 ~iytG~~PTg~~lHlGh~v~~~-~~~~lQ~~~~~~v~I~I~D~~a~~~~-~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (404)
++|+||+||| +|||||++|++ ...+||+++++.++++|||+||++.+ ..+++++++++++++++|+|||+||++++|
T Consensus 3 ~vy~G~~PTg-~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 3 RVLSGIQPSG-EIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CEEEEECSCS-CCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred EEEEeeCCCC-cccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 7999999998 79999999885 33447997326778889999999875 378999999999999999999999999999
Q ss_pred EeCCccCccchHHHHHHHHhhcCHHHHHHhh------CCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCccc
Q 015582 165 FSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF------GFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRC 238 (404)
Q Consensus 165 ~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~------g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~ 238 (404)
|.||+|++ +......++.++++++|.+.. +..+++|+|+|+||+|| || ||+.+++ |
T Consensus 82 ~~qS~~~~--~~el~~~l~~~~~~~~l~r~~~~k~r~~~~~~~~~g~f~YPvLQ-----aa--------Dil~~~~---~ 143 (337)
T 2el7_A 82 FVQSHVPE--HTELSWVFTTLTPLGDLTRMTQFKDKASKQETVWSGLLMYPVLQ-----AA--------DILIYKA---D 143 (337)
T ss_dssp EEGGGSTH--HHHHHHHHHHTSBHHHHHTSHHHHHHTTSSSCCBHHHHHHHHHH-----HH--------HHHHTTC---C
T ss_pred EEcCcchh--hHHHHHHHHccCCHHHHHHhHHHHHHhccCCCCChHHHHhHHHH-----Hh--------hHHhhCC---c
Confidence 99999984 223334477788887776542 33568999999999999 99 9999887 5
Q ss_pred ccccccCchhHHHHHHHHHhHhC------CCCcceeec---ccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhcccc
Q 015582 239 LIPCAIDQDPYFRMTRDVAPRIG------YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYA 309 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r~~------~~kp~~l~~---~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA 309 (404)
+||+|.||+||++++||+|+|+| +++|..+++ ++||+|+| .+|||||.+| +|||+|+|++|++||++ |
T Consensus 144 lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a 220 (337)
T 2el7_A 144 TVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLLEPEESIWQKIQH-L 220 (337)
T ss_dssp EEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTS-SSBCCTTTTC-CCBSSSCHHHHHHHHHT-C
T ss_pred EEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCC-ccccCCCCCC-eeeCcCCHHHHHHHHHh-C
Confidence 89999999999999999999985 578887765 89999998 5899999999 99999999999999999 9
Q ss_pred ccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHH-
Q 015582 310 FSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE- 388 (404)
Q Consensus 310 ~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~- 388 (404)
+|++..+++ ..+++|++|++++|+++|+ +++++++|+++|.+|.++++++|+.||++|+++|+|+|++|++++++
T Consensus 221 ~td~~~~~~---~~~~~p~~~~v~~~~~~~t-~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~ 296 (337)
T 2el7_A 221 PDDPQRIRL---SDPGDPERTILFTYLSYFA-PKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDP 296 (337)
T ss_dssp CCCC----------------CHHHHHHHHHS-CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCCccccc---cCCCCCchhhHHHHHHHcC-ChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCH
Confidence 999877654 3678899999999999994 34699999999999889999999999999999999999999999875
Q ss_pred -HHHHHHhc
Q 015582 389 -MVDAFMAV 396 (404)
Q Consensus 389 -~~~~~~~~ 396 (404)
+|++++..
T Consensus 297 ~~l~~il~~ 305 (337)
T 2el7_A 297 DYVMDALLE 305 (337)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 89998865
No 23
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=2.9e-60 Score=474.01 Aligned_cols=286 Identities=19% Similarity=0.243 Sum_probs=241.4
Q ss_pred CceEEEEecCCCCCCcchhchHHHhhHHH--HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 015582 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTK 161 (404)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~v~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~k 161 (404)
.++++||||+||| +||||||++++ .+| ||+ ++.++++|||+||++.+ .+++++++++++++++|+|+|+||++
T Consensus 3 ~~~~i~sG~~PTG-~lHLGn~vg~l-~~~~~lQ~--~~~~~~~IaD~ha~~~~-~d~~~i~~~~~~~~~~~lA~Gldp~k 77 (348)
T 2yy5_A 3 MMKRALTGIQASG-KQHLGNYLGVM-QSLIELQE--QCQLFVFVADLHSITVD-FQPQALKQNNFDLVRTLLAVGLDPQK 77 (348)
T ss_dssp -CCEEEEEECCCT-TCBHHHHHHTG-GGHHHHHH--HSEEEEEECHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCCTTT
T ss_pred CCeEEEEeeCCCC-cccHHHHHHHH-HHHHHHHh--CCcEEEEEcChhhccCC-CCHHHHHHHHHHHHHHHHHhCCChhH
Confidence 3579999999998 99999999986 677 998 56788889999999864 89999999999999999999999999
Q ss_pred eEEEeCCccCcc--chHH-----HHHHHHhhcCHHHHHHhhCC----CCCccccccccccccchhhhhcCCCCCCCCccc
Q 015582 162 TFIFSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLF 230 (404)
Q Consensus 162 t~i~~~s~~~~~--~~~~-----~~~~l~~~~t~~~~~~~~g~----~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~ 230 (404)
+.||.||+|+++ .+|. .+.++.|+.++++..++.+| .+++++|+|+||+|| || ||+
T Consensus 78 ~~if~qS~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQ-----aa--------Dil 144 (348)
T 2yy5_A 78 ACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALM-----AG--------DIL 144 (348)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHH-----HH--------HHH
T ss_pred eEEEECCcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHH-----HH--------HHH
Confidence 999999999753 1111 12334444444333222222 457899999999999 99 999
Q ss_pred cCCCCcccccccccCchhHHHHHHHHHhHhC------CCCcceee---cccccCCCCCCCCCCCCCCCC--eeeecCCHH
Q 015582 231 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIE---SSFFPALQGETGKMSASDPNS--AIYVTDSAK 299 (404)
Q Consensus 231 ~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~------~~kp~~l~---~~~lp~L~G~~~KMSkS~~ns--aI~L~D~~~ 299 (404)
.+++ |+||||.||+||++++||+|+|+| +++|..++ +++||||+|+.+|||||.+|+ +|||+|+|+
T Consensus 145 ~~~a---~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~ 221 (348)
T 2yy5_A 145 LYQP---DIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKE 221 (348)
T ss_dssp TTCC---SEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHH
T ss_pred HhCc---cEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHH
Confidence 9887 589999999999999999999997 56788777 699999999778999999985 999999999
Q ss_pred HHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHH---------HHHHHHhcCCCCHHHHHHHHHHH
Q 015582 300 AIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELE---------HIKKEYGAGGMLTGEVKQRLAKV 370 (404)
Q Consensus 300 ~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~ele---------ei~~~~~~G~~~~~~lK~~La~~ 370 (404)
+|++||++ |+|++..+++++ .+++|+++++++|+++| ++++++ +|+++|. | ++++++|+.||++
T Consensus 222 ~i~~KI~~-a~td~~~~~~~~--~~~~p~v~~~~~~~~~~--~~~~~~~~~~~~~~~el~~~~~-g-~~~~~~K~~La~~ 294 (348)
T 2yy5_A 222 VVVKKIRQ-ATTDSFNKIRFA--SKTQPGVTNMLTILKAL--LKEPVNQSLTNQLGNDLEAYFS-T-KSYLDLKNALTEA 294 (348)
T ss_dssp HHHHHHHT-CCCCSSCCCSCC--TTTCHHHHHHHHHHHHH--TTSGGGHHHHHHHCSCHHHHGG-G-CCHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCCccccccC--CCCCCchhhHHHHHHhC--ChHhhhhhcccchHHHHHHHHc-C-CCHHHHHHHHHHH
Confidence 99999999 999997655554 46789999999999999 678899 9999999 8 8999999999999
Q ss_pred HHHHhhhHHHHHHHhhHHHHHHHHhcC
Q 015582 371 LTELVERHQVARAAVTDEMVDAFMAVR 397 (404)
Q Consensus 371 i~~~l~~~r~~~~~~~~~~~~~~~~~~ 397 (404)
|+++|+|+|++|+++.|..|+++|..+
T Consensus 295 i~~~l~pire~~~~~~d~~~~~~l~~G 321 (348)
T 2yy5_A 295 TVNLLVNIQRKREQISREQVFNCLQAG 321 (348)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 999999999999999654599988753
No 24
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=4.4e-60 Score=469.41 Aligned_cols=280 Identities=21% Similarity=0.300 Sum_probs=242.1
Q ss_pred eEEEEecCCCCCCcchhchHHHhhHHH--HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015582 86 FYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (404)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~v~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (404)
.++|+||+||| +||||||+|++ .+| ||+ |+.++++|||+||++. +.+++++++++++++++|+|||+||++++
T Consensus 2 ~~vysG~~PTG-~lHlGn~vg~l-~~~~~lQ~--g~~~~~~IaD~ha~~~-~~~~e~i~~~~~~~~~~~la~Gldp~k~~ 76 (328)
T 1i6k_A 2 KTIFSGIQPSG-VITIGNYIGAL-RQFVELQH--EYNCYFCIVDQHAITV-WQDPHELRQNIRRLAALYLAVGIDPTQAT 76 (328)
T ss_dssp CEEEEEECCCS-CCBHHHHHHTH-HHHHHHTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEE
T ss_pred CEEEEeeCCCC-cccHHHHHHHH-HHHHHHHc--CCcEEEEEeCceeecC-CCCHHHHHHHHHHHHHHHHHhCCChhhcE
Confidence 37999999998 99999999996 666 587 5678888999999987 68999999999999999999999999999
Q ss_pred EEeCCccCcc--chHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCc
Q 015582 164 IFSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHL 236 (404)
Q Consensus 164 i~~~s~~~~~--~~~~-----~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~ 236 (404)
||.||+|+++ ..|. .+.++.|+.++++..++ .+++|+|+|+||+|| || ||+.+++
T Consensus 77 if~qS~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~---~~~~~~g~f~YPvLQ-----aa--------Dil~~~~-- 138 (328)
T 1i6k_A 77 LFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG---KEAVSAGLLTYPPLM-----AA--------DILLYNT-- 138 (328)
T ss_dssp EEEGGGCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT---CSSCCHHHHTHHHHH-----HH--------HHHTTTC--
T ss_pred EEecCchhhhhHHHHHHhccccHHHHHHHHHHHHHHhc---cCCCCchhhccHHHH-----HH--------HHHHhCC--
Confidence 9999999753 1221 13456666666554443 267899999999999 99 9999887
Q ss_pred ccccccccCchhHHHHHHHHHhHhC------CCCcceee---cccccCCCCCCCCCCCCCCCCe--eeecCCHHHHHHHh
Q 015582 237 RCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIE---SSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKI 305 (404)
Q Consensus 237 ~~~vp~G~DQd~~~~l~rdla~r~~------~~kp~~l~---~~~lp~L~G~~~KMSkS~~nsa--I~L~D~~~~i~~KI 305 (404)
++||+|.||+||++++||+|+|+| +++|..+. +++||+|+|+++|||||.+|++ |||+|+|++|++||
T Consensus 139 -~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI 217 (328)
T 1i6k_A 139 -DIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKI 217 (328)
T ss_dssp -SEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHH
T ss_pred -CEEecccchHHHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHH
Confidence 589999999999999999999998 55777664 6999999997789999999966 99999999999999
Q ss_pred ccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 015582 306 NKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 385 (404)
Q Consensus 306 ~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~ 385 (404)
++ |+|++..++.++ .+++|++|++++|+++| +++++++|+++|. | ++++++|+.||++|+++|+|+|++|+++
T Consensus 218 ~~-a~td~~~~~~~~--~~~~p~v~~~~~~~~~~--~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~ 290 (328)
T 1i6k_A 218 KS-AVTDSEGTIRYD--KEAKPGISNLLNIYSTL--SGQSIEELERQYE-G-KGYGVFKADLAQVVIETLRPIQERYHHW 290 (328)
T ss_dssp HH-CCCCSSCCCCCB--TTTBHHHHHHHHHHHHH--HCCCHHHHHHHTT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-cCCCCccccccC--CCCCcchhhHHHHHHHC--CchhHHHHHHHHc-C-CCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99 999997655443 36789999999999999 5688999999999 8 8999999999999999999999999999
Q ss_pred hHH-HHHHHHhc
Q 015582 386 TDE-MVDAFMAV 396 (404)
Q Consensus 386 ~~~-~~~~~~~~ 396 (404)
+++ .|++++..
T Consensus 291 ~~~~~~~~il~~ 302 (328)
T 1i6k_A 291 MESEELDRVLDE 302 (328)
T ss_dssp HTCTHHHHHHHH
T ss_pred hCChhHHHHHHH
Confidence 863 38887764
No 25
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=4.1e-59 Score=462.12 Aligned_cols=292 Identities=23% Similarity=0.337 Sum_probs=261.3
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCH
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV 138 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~ 138 (404)
-.+++||++..+++ +.|.+.+++++++++|+||+||| +|||||+++++..++||++ |+.++++|||+||++.+..++
T Consensus 7 ~~l~~rg~~e~~~~-~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~l~~l~~~~~lq~~-g~~~~~~i~D~~a~~~d~~~~ 83 (323)
T 2cyb_A 7 LRLITRNAEEVVTE-EELRQLIETKEKPRAYVGYEPSG-EIHLGHMMTVQKLMDLQEA-GFEIIVLLADIHAYLNEKGTF 83 (323)
T ss_dssp HHHHHTTCSEEETH-HHHHHHHHSCSCCEEEEEECCCS-CCBHHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTCCCH
T ss_pred HHHHHcCChhhcCH-HHHHHHHhCCCCCEEEECcCCCC-cchHHHHHHHHHHHHHHHC-CCcEEEEECCceeEcCCCCCH
Confidence 47889999988885 77778888789999999999998 8999999999888999996 788999999999998775699
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCcc-chHHHHHHHHhhcCHHHHHHhh---CCC-CCccccccccccccc
Q 015582 139 EESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQE 213 (404)
Q Consensus 139 e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~-~~~~~~~~l~~~~t~~~~~~~~---g~~-~~~~~g~~~YpllQ~ 213 (404)
+++++++.+++++++|||+||+++.||.||+|..+ .++..++.+++++|+++|.++. ++. ++.++|+|+||+||
T Consensus 84 ~~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~lq- 162 (323)
T 2cyb_A 84 EEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQ- 162 (323)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCSCSSSCBTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCHHHHhccchhhccccCCCCchhhhhHHHH-
Confidence 99999999999999999999999999999999854 5777788899999999999865 443 34599999999999
Q ss_pred hhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeee
Q 015582 214 MIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 293 (404)
Q Consensus 214 ~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~ 293 (404)
|| |++.++++ +||+|.||++|++++||+|+|+|+++|..+++++||+|+| +||||| ++++||
T Consensus 163 ----aa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~pll~~l~G--~KMSKS-~~n~I~ 224 (323)
T 2cyb_A 163 ----AL--------DIAHLGVD---LAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYIS 224 (323)
T ss_dssp ----HH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCBCTTS--SBCCTT-TTCSCB
T ss_pred ----HH--------HHHhcCCC---EEEechhhHHHHHHHHHHHHhcCCCCceEEecCcccCCCC--CcccCC-cCceeC
Confidence 99 99999874 7999999999999999999999999999999999999997 899999 556999
Q ss_pred ecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhc----------------C--ChHHHHHHHHHHhc
Q 015582 294 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL----------------E--DDAELEHIKKEYGA 355 (404)
Q Consensus 294 L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~----------------~--~~~eleei~~~~~~ 355 (404)
|+|+|++|++||++ |+|++. +++.|++++|+++|+ . +.+++++|+++|++
T Consensus 225 l~d~p~~i~~Ki~~-a~td~~-----------~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~ 292 (323)
T 2cyb_A 225 VRDPPEEVERKIRK-AYCPAG-----------VVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKS 292 (323)
T ss_dssp TTCCHHHHHHHHHT-SCCCTT-----------CCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCCCC-----------CCCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhc
Confidence 99999999999999 999874 345577899999874 1 34589999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhHHHHHHH
Q 015582 356 GGMLTGEVKQRLAKVLTELVERHQVARAA 384 (404)
Q Consensus 356 G~~~~~~lK~~La~~i~~~l~~~r~~~~~ 384 (404)
|+++|++||+.||+.|+++++|+|++|++
T Consensus 293 g~~~~~~~K~~la~~i~~~l~pir~~~~~ 321 (323)
T 2cyb_A 293 GQLHPLDLKIAVAKYLNMLLEDARKRLGV 321 (323)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999865
No 26
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.3e-59 Score=477.44 Aligned_cols=290 Identities=16% Similarity=0.170 Sum_probs=257.4
Q ss_pred hhhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC--
Q 015582 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (404)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 135 (404)
...|++||++++|++.+.|.+.++ ++++++|+||+|||++|||||+++++.++|||++ |+.++++|||+||++.++
T Consensus 6 ~~~L~~RG~~~~~~~~e~L~~~L~-~~~~~iy~G~dPTg~sLHLGhlv~l~~l~~lQ~~-G~~~i~lIgD~ta~igdpsk 83 (432)
T 2jan_A 6 LDELSWRGLIAQSTDLDTLAAEAQ-RGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRA-GHRPIVLAGGATGMIGDPRD 83 (432)
T ss_dssp HHHHHHHTCCSEESCHHHHHHHHH-HSCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHHCCCC
T ss_pred HHHHHHcCchhhcCCHHHHHHHHc-CCCCEEEEeeCCCCCCcCHHHHHHHHHHHHHHHC-CCcEEEEEcCcEEEccCCcc
Confidence 367899999999999999988887 4789999999999978999999999999999996 677788899999987644
Q ss_pred ------CCHHHHHHHHHHH---HHHHHHcCCCCCceEEEeCCccCccchHHHHHH-HHhhcCHHHHHHhhCC-----CCC
Q 015582 136 ------LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF-----TGE 200 (404)
Q Consensus 136 ------~~~e~i~~~~~~~---~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~-l~~~~t~~~~~~~~g~-----~~~ 200 (404)
++.+++++|+..+ ++.|+|||+||++++||.||+|+++..+..+++ +++++|+++|.++..+ .++
T Consensus 84 ~~~R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~~~~~ 163 (432)
T 2jan_A 84 VGERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRLAGEG 163 (432)
T ss_dssp TTTSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHTSTTC
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhhcCCC
Confidence 8899999999644 778899999999999999999997776777777 9999999999986443 467
Q ss_pred ccccccccccccchhhhhcCCCCCCCCccccC----CCCcccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCC
Q 015582 201 DHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPAL 276 (404)
Q Consensus 201 ~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~----~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L 276 (404)
+|+|+|+||+|| || ||+.+ +++ ++|+|.||+||++++||+|+|+|..+|..++.++||++
T Consensus 164 is~~ef~YPlLQ-----aa--------Dil~l~~~~~~~---i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~l 227 (432)
T 2jan_A 164 ISYTEFSYLLLQ-----AN--------DYVELHRRHGCT---LQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAA 227 (432)
T ss_dssp CBHHHHHHHHHH-----HH--------HHHHHHHHHCCC---EEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCT
T ss_pred cchHHHHHHHHH-----HH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCC
Confidence 899999999999 99 99988 653 67899999999999999999999988899999999999
Q ss_pred CCCCCCCCCCCCCCeeeecC---CHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhc-CChHHHHHHHHH
Q 015582 277 QGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKE 352 (404)
Q Consensus 277 ~G~~~KMSkS~~nsaI~L~D---~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~-~~~~eleei~~~ 352 (404)
+| +|||||.+|++|||+| +|+++++||++ + +|.+ +++||++|+ .+.+++++|+++
T Consensus 228 dG--~KMSKS~~nsaI~L~d~~tsp~~i~qki~~-~-----------------~D~~-v~~~l~l~t~~~~~ei~~l~~~ 286 (432)
T 2jan_A 228 DG--TKFGKSTGGGSLWLDPQMTSPYAWYQYFVN-T-----------------ADAD-VIRYLRWFTFLSADELAELEQA 286 (432)
T ss_dssp TS--CBTTBCSSSCBCBSSTTTSCHHHHHHHHHT-C-----------------CHHH-HHHHHHHHSCCCHHHHHHHHHH
T ss_pred Cc--CcCCCCCCCCeEEccCCCCCHHHHHHHHhc-C-----------------Cchh-HHHHHHHHHcCChHHHHHHHHH
Confidence 98 7999999999999999 99999999999 2 2333 478888876 488999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhH
Q 015582 353 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 387 (404)
Q Consensus 353 ~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~ 387 (404)
|.+|. +++++|+.||++|++++|+.+++.++...
T Consensus 287 ~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a~~~ 320 (432)
T 2jan_A 287 TAQRP-QQRAAQRRLASELTVLVHGEAATAAVEHA 320 (432)
T ss_dssp HHHCG-GGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhcc-CHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99995 99999999999999999999999887653
No 27
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=5.6e-58 Score=491.12 Aligned_cols=316 Identities=19% Similarity=0.241 Sum_probs=269.2
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHh-hHHHHHhhCCCeEEEEccCccccccc--CC
Q 015582 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWK--NL 136 (404)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~-~~~~lQ~~~~~~v~I~I~D~~a~~~~--~~ 136 (404)
.+++||.... .+.++|.+.+++|+++++|+||+||| +|||||+++.. .+++||++ |+.++++|||+||++.+ ..
T Consensus 16 ~~~~~~~~e~-~~~~eL~~~L~~~~~~~vy~G~~PTg-~lHLG~~v~~~~~~~~lQ~~-G~~~~~lIaD~ha~~~d~~~~ 92 (690)
T 3p0j_A 16 KLLRSVGEEC-IQESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTAA-GCEFVFWVADWFALMNDKVGG 92 (690)
T ss_dssp HHHHHTCSEE-ECHHHHHHHHHHCTTEEEEEEECCCS-CCBHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGGGGCTTTT
T ss_pred HHHhhCceee-cCHHHHHHHHhcCCCceEEeeecCCC-cchhHhhHHHHHHHHHHHHC-CCcEEEEEeeeEEEecCCCcc
Confidence 5677886544 44567777788889999999999999 89999977643 47789996 88999999999999875 37
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCc-c--chHHHHHHHHhhcCHHHHHHhh---CCCC-Cccccccccc
Q 015582 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-G--AFYKNMVKVAKCVTYNKVVGIF---GFTG-EDHIGKVSFP 209 (404)
Q Consensus 137 ~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~-~--~~~~~~~~l~~~~t~~~~~~~~---g~~~-~~~~g~~~Yp 209 (404)
+.+++++++.++++.|+|||+||++++||.||+|.. + .+|..+.++++++|+++|+++. |+.+ ++++|+|+||
T Consensus 93 ~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~~~i~~g~f~YP 172 (690)
T 3p0j_A 93 ELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYP 172 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-------CCCCCSCSSHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhccCCCchhhHhhH
Confidence 899999999999999999999999999999999864 2 5788888999999999999753 4332 4899999999
Q ss_pred cccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCC-CcceeecccccCCCCCCCCCCCCCC
Q 015582 210 PVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDP 288 (404)
Q Consensus 210 llQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~-kp~~l~~~~lp~L~G~~~KMSkS~~ 288 (404)
+|| || ||+.++++ ++|||.||+||++++||+|+|+|+. +|.++++++||+|++..+|||||.+
T Consensus 173 lLQ-----Aa--------Dil~~~ad---~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~ 236 (690)
T 3p0j_A 173 LMQ-----CC--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDP 236 (690)
T ss_dssp HHH-----HH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBG
T ss_pred HHH-----HH--------HHHhhCCC---EEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCC
Confidence 999 99 99999885 8999999999999999999999985 6888889999999432479999999
Q ss_pred CCeeeecCCHHHHHHHhccccccCCcc-hhHHHhhcCCC---CcchhHHHHHHhhcC------------ChHHHHHHHHH
Q 015582 289 NSAIYVTDSAKAIKNKINKYAFSGGQE-SVELHRKLGAN---LEVDIPVKYLSFFLE------------DDAELEHIKKE 352 (404)
Q Consensus 289 nsaI~L~D~~~~i~~KI~kyA~t~~~~-t~e~~~~~g~~---pd~~v~~~~l~~f~~------------~~~eleei~~~ 352 (404)
||+|||+|+|++|++||++ |||++.. +..++++.|++ ++.+++++|+.+|+. +++++++|+++
T Consensus 237 ~~~I~L~D~p~~i~kKI~~-A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~ 315 (690)
T 3p0j_A 237 DSAIFMEDTEEDVARKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQA 315 (690)
T ss_dssp GGSCBTTCCHHHHHHHHHT-SCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHH
T ss_pred CCeeeccCCHHHHHHHHHh-CcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHH
Confidence 7799999999999999999 9999654 44456667765 688999999998742 35789999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHH--HHHHHHh
Q 015582 353 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMA 395 (404)
Q Consensus 353 ~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~--~~~~~~~ 395 (404)
|++|.++|++||+.||+.|+++|+|+|++|++..+. .++++..
T Consensus 316 y~~G~l~~~dlK~~lae~i~~~L~Pirer~~~~~~~~~~l~~v~~ 360 (690)
T 3p0j_A 316 FVSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKS 360 (690)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 999999999999999999999999999999986643 5666544
No 28
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=5.7e-58 Score=461.47 Aligned_cols=290 Identities=20% Similarity=0.286 Sum_probs=242.9
Q ss_pred hhhHHhcCc--ccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC
Q 015582 58 PHVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135 (404)
Q Consensus 58 ~~~l~~Rgi--~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~ 135 (404)
...|++||+ ++++++++.+| ++ +++++|+||+||| +|||||++++++.+|+|+. |+.++++|||+||++.+.
T Consensus 10 ~~~l~~Rg~~e~~~~~~L~~~L---~~-~~~~vy~G~~PTG-~lHlG~~~~~l~~~~~~q~-g~~~i~~I~D~ha~t~~~ 83 (372)
T 1n3l_A 10 KLHLITRNLQEVLGEEKLKEIL---KE-RELKIYWGTATTG-KPHVAYFVPMSKIADFLKA-GCEVTILFADLHAYLDNM 83 (372)
T ss_dssp HHHHHHTTCSEEECHHHHHHHH---TT-SCCEEEEEECCSS-CCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTT
T ss_pred HHHHHHcCCeeecCHHHHHHHH---hc-CCCEEEeCcCCCC-cccHHHHHHHHHHHHHHHC-CCCEEEEEcCCceeeCCC
Confidence 468999997 56666666555 44 6789999999998 9999999999988888884 889999999999999765
Q ss_pred CCHHHHHHHH---HHH-HHH-HHHcCCCCCceEEEeCCccC-ccchHHHHHHHHhhcCHHHHHHh----hCCCCCccccc
Q 015582 136 LSVEESQRLA---REN-AKD-IIACGFDVTKTFIFSDFDYV-GGAFYKNMVKVAKCVTYNKVVGI----FGFTGEDHIGK 205 (404)
Q Consensus 136 ~~~e~i~~~~---~~~-~~~-ilA~G~dp~kt~i~~~s~~~-~~~~~~~~~~l~~~~t~~~~~~~----~g~~~~~~~g~ 205 (404)
.+.+++.++. .++ +.. ++|||+||+++.||.||+|. ...++.+++++++++|++++++. .++.+++++|+
T Consensus 84 ~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~v~~~~~~~~~g~ 163 (372)
T 1n3l_A 84 KAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSG 163 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhhhhcccCCCccee
Confidence 5555554444 333 444 68999999999999999994 45677888999999999999875 35567889999
Q ss_pred cccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCC
Q 015582 206 VSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA 285 (404)
Q Consensus 206 ~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSk 285 (404)
|+||+|| || ||+.++++ +||+|.||++|++++||+++|+|+++|..++.++||+|+| +||||
T Consensus 164 ~~YP~lQ-----aa--------Dil~~~a~---~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gldG--~KMSK 225 (372)
T 1n3l_A 164 LLYPGLQ-----AL--------DEEYLKVD---AQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSS 225 (372)
T ss_dssp HHHHHHH-----HH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCSSC--C----
T ss_pred eecchHh-----hc--------cHHHhcCC---EEEcChhHHHHHHHHHHHHHHcCCCCCEEEecCccCCCCc--ccccC
Confidence 9999999 99 99999874 7999999999999999999999999999999999999997 79999
Q ss_pred CCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHh--------hcC----------ChHHHH
Q 015582 286 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF--------FLE----------DDAELE 347 (404)
Q Consensus 286 S~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~--------f~~----------~~~ele 347 (404)
|.+|++|||+|+|++|++||++ |||++.. ++.+.+++|+++ |+. +.++++
T Consensus 226 S~~ns~I~L~d~p~~i~kKi~~-A~td~~~-----------~~d~~v~~~lk~~l~~~~~~f~~er~~~~g~~~~~~~i~ 293 (372)
T 1n3l_A 226 SEEESKIDLLDRKEDVKKKLKK-AFCEPGN-----------VENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYV 293 (372)
T ss_dssp ---CCSCBTTCCHHHHHHHHHT-CCCCTTC-----------CSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHH
T ss_pred CCCCCeEeccCCHHHHHHHHHH-ccCCCCC-----------CCcccHHHHHHHhhhhhhcceeecccccccCCCCHHHHH
Confidence 9999899999999999999999 9999853 233456788885 431 457899
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHH
Q 015582 348 HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 383 (404)
Q Consensus 348 ei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~ 383 (404)
+|+++|.+|++++++||+.||++|+++|+|+|++++
T Consensus 294 el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 294 DLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN 329 (372)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 999999999899999999999999999999999998
No 29
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=8.5e-58 Score=450.76 Aligned_cols=285 Identities=19% Similarity=0.245 Sum_probs=248.9
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccCCCH
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV 138 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~ 138 (404)
-.+++|| +..+.+.+.|.+.++ ++++++|+||+||| +|||||+++++.++|||++ |+.++++|||+||++.+..++
T Consensus 4 ~~l~~r~-~~e~~~~~~l~~~L~-~~~~~vy~G~~PTg-~lHlGhl~~l~~~~~lQ~~-g~~~~~~i~D~~a~~~~~~~~ 79 (314)
T 2zp1_A 4 FEMIKRN-TSEIISEEELREVLK-KDEKSAYIGFEPSG-KIHLGHYLQIKKMIDLQNA-GFDIIILLADLAAYLNQKGEL 79 (314)
T ss_dssp HHHHHTT-CSEEETHHHHHHHHT-SSSEEEEEEECCCS-SCBHHHHHHHHHHHHHHHT-TEEEEEEECHHHHHHTTCCCH
T ss_pred HHHHHcC-CeecCCHHHHHHHHc-CCCCEEEEccCCCC-CcchhhHHHHHHHHHHHHC-CCCEEEEEecceEecCCCCCH
Confidence 3678999 444555555555555 68999999999998 8999999999999999996 788999999999998766699
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEeCCccCcc-chHHHHHHHHhhcCHHHHHHhh---CCC-CCccccccccccccc
Q 015582 139 EESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQE 213 (404)
Q Consensus 139 e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~-~~~~~~~~l~~~~t~~~~~~~~---g~~-~~~~~g~~~YpllQ~ 213 (404)
+++++|+.+++++|+|||+| +.++.||+|..+ .+|..+.++++++|+++|.++. ++. +..|+|+|+||+||
T Consensus 80 e~i~~~~~~~~~~~~a~G~d---~~~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~LQ- 155 (314)
T 2zp1_A 80 DEIRKIGDYNKKVFEAMGLK---AKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQ- 155 (314)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---CEEEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhcCCC---eEEEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhccCCCCchhhhhHHHH-
Confidence 99999999999999999998 788889999865 4678888899999999999864 333 22399999999999
Q ss_pred hhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeee
Q 015582 214 MIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 293 (404)
Q Consensus 214 ~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~ 293 (404)
|| |++.+++ +++|+|.||+||++++|++++ ++|..+++++||+|+| .+||||| ++|+||
T Consensus 156 ----aa--------Dil~~~~---~~v~~G~DQ~~~~~l~R~i~~----~~~~~~~~~~l~~l~G-~~KMSKS-~~~~I~ 214 (314)
T 2zp1_A 156 ----VN--------TSHYLGV---DVAVGGMEQRKIHMLARELLP----KKVVCIHNPVLTGLDG-EGKMSSS-KGNFIA 214 (314)
T ss_dssp ----HH--------HHHHHTC---SEEEEEGGGHHHHHHHHHHSS----SCCEEEEECCCBCTTS-SSBCCTT-TTCSCB
T ss_pred ----HH--------hHHhhCC---CEEEcChhHHHHHHHHHHhcC----CCcEEeeccccccCCc-ccccCCC-Ccceec
Confidence 99 9998887 489999999999999999987 6888899999999996 3799999 666999
Q ss_pred ecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhc---------------CChHHHHHHHHHHhcCCC
Q 015582 294 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL---------------EDDAELEHIKKEYGAGGM 358 (404)
Q Consensus 294 L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~---------------~~~~eleei~~~~~~G~~ 358 (404)
|+|+|++|++||++ |||+++. ++.+++|+|+++|. .+.+++++|+++|++|.+
T Consensus 215 L~d~~~~i~~KI~~-a~td~~~-----------~~~~~~~~~~~~~~~~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~ 282 (314)
T 2zp1_A 215 VDDSPEEIRAKIKK-AYCPAGV-----------VEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKEL 282 (314)
T ss_dssp TTCCHHHHHHHHHH-SCCCTTC-----------CTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHh-CCCCCCC-----------CCCCcHHHHHHHHhcCCcceeehhhccCCCCcCCHHHHHHHHHcCCC
Confidence 99999999999999 9999754 35678899999986 145689999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhHHHHHHH
Q 015582 359 LTGEVKQRLAKVLTELVERHQVARAA 384 (404)
Q Consensus 359 ~~~~lK~~La~~i~~~l~~~r~~~~~ 384 (404)
+|++||+.||++|+++++|+|++++.
T Consensus 283 ~~~~~K~~la~~i~~~l~p~r~~~~~ 308 (314)
T 2zp1_A 283 HPMYLKNAVAEELIKILEPIRKRLLE 308 (314)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999874
No 30
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=2.2e-58 Score=461.51 Aligned_cols=289 Identities=16% Similarity=0.158 Sum_probs=236.4
Q ss_pred hhhHHhcCcc--cccC-----CHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCccc
Q 015582 58 PHVFLRRGVF--FAHR-----DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130 (404)
Q Consensus 58 ~~~l~~Rgi~--~~~~-----d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a 130 (404)
.+.|++||++ +.++ +++.+|+..++|+|+++|+||+|||++|||||+++++.++|||++ |+.++++|||+||
T Consensus 12 ~~~l~~Rg~~~~~~~~~~~~~~L~~~L~~~~~g~~~~vy~G~~PTg~sLHLGhl~~l~~~~~lQ~~-G~~~~~lIaD~ha 90 (356)
T 2pid_A 12 LAAQKARGLFKDFFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRA-GHNVIALVGGATA 90 (356)
T ss_dssp HHHHHHHTSCCEEECSSCTTSCGGGGC-------CCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGG
T ss_pred HHHHHHcCChheeCCccccHHHHHHHHhcCccCCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHC-CCcEEEEEcccee
Confidence 4899999999 7787 788888776667789999999999977999999999999999996 7788888999999
Q ss_pred ccccC---------CCHHHHHHHHHHHHHHHHHcCCCCCc-----------eEEEeCCccCccchHHHHHH-HHhhcCHH
Q 015582 131 CMWKN---------LSVEESQRLARENAKDIIACGFDVTK-----------TFIFSDFDYVGGAFYKNMVK-VAKCVTYN 189 (404)
Q Consensus 131 ~~~~~---------~~~e~i~~~~~~~~~~ilA~G~dp~k-----------t~i~~~s~~~~~~~~~~~~~-l~~~~t~~ 189 (404)
++.++ ++.+++++|+++++++|+|+ +||++ +.|+.|++|+.+..+..+++ ++++++++
T Consensus 91 l~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~ 169 (356)
T 2pid_A 91 RLGDPSGRTKEREALETERVRANARALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMG 169 (356)
T ss_dssp GTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHH
T ss_pred eecCCcccccccccCCHHHHHHHHHHHHHHHHHh-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHH
Confidence 87532 58999999999999999999 88754 89999999987655555555 89999999
Q ss_pred HHHHhhCC------CCCccccccccccccchhhhhcCCCCCCCCccccC----CCCcccccccccCchhHHHHHHHHHhH
Q 015582 190 KVVGIFGF------TGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAPR 259 (404)
Q Consensus 190 ~~~~~~g~------~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~----~~~~~~~vp~G~DQd~~~~l~rdla~r 259 (404)
+|.++.++ .+++|+|+|+||+|| || ||+.+ +++ ++|||.||+||++++||+|+|
T Consensus 170 ~m~~~~~~k~r~~~~~~is~g~f~YPvLQ-----Aa--------Dil~l~~~~~~~---i~p~G~DQ~~~i~l~rdla~r 233 (356)
T 2pid_A 170 TLLSRQSVQLRLKSPEGMSLAEFFYQVLQ-----AY--------DFYYLFQRYGCR---VQLGGSDQLGNIMSGYEFINK 233 (356)
T ss_dssp HHHHCHHHHHHHTSTTCCBHHHHHHHHHH-----HH--------HHHHHHHHHCCC---EEEEEGGGHHHHHHHHHHHHH
T ss_pred HHhcchHHHHhhccCCCCchHHHHHHHHH-----HH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHHHHH
Confidence 99987554 347899999999999 99 99988 764 679999999999999999999
Q ss_pred hCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecC---CHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHH
Q 015582 260 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 336 (404)
Q Consensus 260 ~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D---~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l 336 (404)
+|..+|..++.++||+|+| +|||||.+| +|||+| +|++|++||++ + +|.+ +++||
T Consensus 234 ~n~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~~ki~~-~-----------------~D~~-v~~~l 291 (356)
T 2pid_A 234 LTGEDVFGITVPLITSTTG--AKLGKSAGN-AVWLNRDKTSPFELYQFFVR-Q-----------------PDDS-VERYL 291 (356)
T ss_dssp HSSCCCEEEEECCCC----------------CCBSSTTTSCHHHHHHHHHT-C-----------------CHHH-HHHHH
T ss_pred hCCCCccccccccccCCCc--ccccCCCCC-eeeccCCCCCHHHHHHHHHc-C-----------------Cchh-HHHHH
Confidence 9998899999999999998 799999766 999999 99999999999 2 2333 37888
Q ss_pred Hhhc-CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhH
Q 015582 337 SFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 387 (404)
Q Consensus 337 ~~f~-~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~ 387 (404)
++|+ .+++++++|+++|++| .+++++|+.||++|++++|+.++++++...
T Consensus 292 ~~~t~~~~~~i~~l~~~~~~g-~~~~~~K~~La~~v~~~l~g~~~~~~a~~~ 342 (356)
T 2pid_A 292 KLFTFLPLPEIDHIMQLHVKE-PERRGPQKRLAAEVTKLVHGREGLDSAKRC 342 (356)
T ss_dssp HHHCCCCHHHHHHHHHHHHHC-GGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 8876 3889999999999998 599999999999999999999999887664
No 31
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=5.5e-58 Score=466.39 Aligned_cols=290 Identities=17% Similarity=0.218 Sum_probs=251.1
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC---
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~--- 135 (404)
..|.+||++++|++.+.|.+.++ ++++++|+||+|||+||||||+++++.++|||++ |+.++++|||+|+++..+
T Consensus 5 ~~L~~Rg~~~~~~~~~~L~~~L~-~~~~~iy~G~dPTg~sLHlGh~v~l~~l~~lQ~~-G~~~i~lIgd~ta~igdpsgk 82 (419)
T 2ts1_A 5 AELQWRGLVNQTTDEDGLRKLLN-EERVTLYCGFDPTADSLHIGHLATILTMRRFQQA-GHRPIALVGGATGLIGDPSGK 82 (419)
T ss_dssp HHHHHHTCCSEESCHHHHHHHHH-HSCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTTC
T ss_pred HHHHHcCchhhcCCHHHHHHHHc-CCCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEcCceeEecCCCCc
Confidence 57889999999999999988887 4789999999999988999999999999999996 677788899999987532
Q ss_pred ------CCHHHHHHHHHHH---HHHHHHcCCCCCceEEEeCCccCccchHHHHHH-HHhhcCHHHHHHhhCC----CCCc
Q 015582 136 ------LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF----TGED 201 (404)
Q Consensus 136 ------~~~e~i~~~~~~~---~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~-l~~~~t~~~~~~~~g~----~~~~ 201 (404)
++.+++++|+..+ +..++++|+||++++||+||+|+.+..+..+++ +++++|+++|.++.++ .+++
T Consensus 83 ~~~R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r~~~~i 162 (419)
T 2ts1_A 83 KSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGI 162 (419)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTTTTCC
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhccCCCc
Confidence 5999999999655 566778999999999999999987777777777 9999999999886543 4688
Q ss_pred cccccccccccchhhhhcCCCCCCCCccccCCCCccc-ccccccCchhHHHHHHHHHhHh-CCCCcceeecccccCCCCC
Q 015582 202 HIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRI-GYHKPALIESSFFPALQGE 279 (404)
Q Consensus 202 ~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~-~vp~G~DQd~~~~l~rdla~r~-~~~kp~~l~~~~lp~L~G~ 279 (404)
|+|+|+||+|| || ||+.+..+++| ++|+|.||+||++++||+|+|+ |..+|..++.++||+++|
T Consensus 163 s~~ef~YPlLQ-----aa--------Dil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG- 228 (419)
T 2ts1_A 163 SFTEFSYMMLQ-----AY--------DFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADG- 228 (419)
T ss_dssp CHHHHHHHHHH-----HH--------HHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTS-
T ss_pred chHHHHHHHHH-----HH--------HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCc-
Confidence 99999999999 99 99988222223 5679999999999999999999 988889999999999998
Q ss_pred CCCCCCCCCCCeeeecC---CHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhc-CChHHHHHHHHHHhc
Q 015582 280 TGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGA 355 (404)
Q Consensus 280 ~~KMSkS~~nsaI~L~D---~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~-~~~~eleei~~~~~~ 355 (404)
+|||||.+| +|||+| +|+++++||++ . +|. .+++||++|+ .+.+++++|+++|.+
T Consensus 229 -~KMSKS~~n-aI~L~d~~tsp~~i~qki~~-~-----------------~D~-~v~~~l~l~t~~~~~ei~~l~~~~~~ 287 (419)
T 2ts1_A 229 -TKFGKTESG-TIWLDKEKTSPYEFYQFWIN-T-----------------DDR-DVIRYLKYFTFLSKEEIEALEQELRE 287 (419)
T ss_dssp -CCTTCCSSC-CCBSSTTTSCHHHHHHHHHT-C-----------------CHH-HHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred -ccccCCCCC-eEecCCCCCCHHHHHHHHhc-C-----------------Cch-hHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 799999987 999999 99999999999 2 232 2478888876 388999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 015582 356 GGMLTGEVKQRLAKVLTELVERHQVARAAVT 386 (404)
Q Consensus 356 G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~ 386 (404)
|. +++++|+.||++|++++|+.+++.++..
T Consensus 288 g~-~~~~~K~~LA~~v~~~~hg~~~~~~a~~ 317 (419)
T 2ts1_A 288 AP-EKRAAQKTLAEEVTKLVHGEEALRQAIR 317 (419)
T ss_dssp CT-TSCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 95 9999999999999999999999987765
No 32
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=7.4e-57 Score=459.09 Aligned_cols=290 Identities=17% Similarity=0.282 Sum_probs=253.7
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC---
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~--- 135 (404)
..|++||++++|++.+.|.+.++ ++++++|+||+|||+||||||+++++.++|||++ |+.++++|||+|+++..+
T Consensus 7 ~~l~~Rg~~~~~~~~~~L~~~L~-~~~~~iy~G~dPTg~sLHlGh~v~l~~~~~lQ~~-G~~~~~lIgd~ta~igdp~gk 84 (420)
T 1jil_A 7 EDLKWRGLIYQQTDEQGIEDLLN-KEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEH-GHRPIVLIGGGTGMIGDPSGK 84 (420)
T ss_dssp HHHHHTTCCCCBSCHHHHHHHHH-HSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTTC
T ss_pred HHHHHcCchhhcCCHHHHHHHHc-CCCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEcCceeEecCCCcc
Confidence 67899999999999888877776 4789999999999988999999999999999996 677888899999987532
Q ss_pred ------CCHHHHHHHHHHHHHHHHHcCCCC---CceEEEeCCccCccchHHHHHH-HHhhcCHHHHHHhhCC----CCCc
Q 015582 136 ------LSVEESQRLARENAKDIIACGFDV---TKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF----TGED 201 (404)
Q Consensus 136 ------~~~e~i~~~~~~~~~~ilA~G~dp---~kt~i~~~s~~~~~~~~~~~~~-l~~~~t~~~~~~~~g~----~~~~ 201 (404)
++.+++++|+..+.+.++++ +|| ++++||+||+|+.+..+.++++ +++++|+++|.++..+ .+++
T Consensus 85 ~~~R~~l~~e~i~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~~~~i 163 (420)
T 1jil_A 85 SEERVLQTEEQVDKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGI 163 (420)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHHTTTC
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhccCCc
Confidence 59999999999999989888 887 9999999999986666666666 9999999999987665 4689
Q ss_pred cccccccccccchhhhhcCCCCCCCCccccCCCCccc-ccccccCchhHHHHHHHHHhHh-CCCCcceeecccccCCCCC
Q 015582 202 HIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRI-GYHKPALIESSFFPALQGE 279 (404)
Q Consensus 202 ~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~-~vp~G~DQd~~~~l~rdla~r~-~~~kp~~l~~~~lp~L~G~ 279 (404)
|+|+|+||+|| || ||+.+..+++| ++|+|.||+||++++||+|+|+ |..+|..+++++||+++|
T Consensus 164 s~~ef~YplLQ-----aa--------D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG- 229 (420)
T 1jil_A 164 SYTEFTYTILQ-----AI--------DFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDG- 229 (420)
T ss_dssp CHHHHHHHHHH-----HH--------HHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTS-
T ss_pred chHHHHHHHHH-----HH--------HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCcc-
Confidence 99999999999 99 99988222223 5679999999999999999999 988889999999999998
Q ss_pred CCCCCCCCCCCeeeecC---CHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhc-CChHHHHHHHHHHhc
Q 015582 280 TGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGA 355 (404)
Q Consensus 280 ~~KMSkS~~nsaI~L~D---~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~-~~~~eleei~~~~~~ 355 (404)
+|||||.+| +|||+| +|+++++||++ + +|.+ +++||++|+ .+.+++++|+++|.+
T Consensus 230 -~KMSKS~~n-aI~L~d~~tsp~~i~~ki~~-~-----------------~D~~-v~~~l~~~t~~~~~ei~~l~~~~~~ 288 (420)
T 1jil_A 230 -KKFGKSESG-AVWLDAEKTSPYEFYQFWIN-Q-----------------SDED-VIKFLKYFTFLGKEEIDRLEQSKNE 288 (420)
T ss_dssp -CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C-----------------CHHH-HHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred -ccccCCCCC-eEecCCCCCCHHHHHHHHhc-C-----------------Cchh-HHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 799999987 999999 99999999999 2 2322 478888876 488999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhH
Q 015582 356 GGMLTGEVKQRLAKVLTELVERHQVARAAVTD 387 (404)
Q Consensus 356 G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~ 387 (404)
|. +++++|+.||++|++++|+.+++.++...
T Consensus 289 g~-~~~~~K~~La~~v~~~~hg~~~~~~a~~~ 319 (420)
T 1jil_A 289 AP-HLREAQKTLAEEVTKFIHGEDALNDAIRI 319 (420)
T ss_dssp CG-GGCHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CC-ChHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 96 99999999999999999999999877653
No 33
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-57 Score=458.02 Aligned_cols=302 Identities=20% Similarity=0.225 Sum_probs=244.2
Q ss_pred hhHHhcCcccccCCHHHHHHHHHh-CCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCccccccc-CC
Q 015582 59 HVFLRRGVFFAHRDLNDILDAYEK-GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NL 136 (404)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~-~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~-~~ 136 (404)
-.|++|| +..+.+.+.|.+.+++ ++|+++|+||+||| +|||||++++++..++|+ .|+.++++|+|+||++.+ ..
T Consensus 13 ~~l~~rg-~~e~~~~e~L~~~L~~~~~p~~vy~G~~PTG-~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~ 89 (394)
T 2dlc_X 13 FGLITKN-LQEVLNPQIIKDVLEVQKRHLKLYWGTAPTG-RPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKA 89 (394)
T ss_dssp HHHHHTT-CSEEECHHHHHHHHHTSCSCCEEEEEECCCS-CCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSS
T ss_pred HHHHHcC-cceecCHHHHHHHHHccCCCeEEEEEeCCCC-CccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCC
Confidence 4788999 6666677777777774 78889999999998 999999999988888887 488899999999999875 35
Q ss_pred CHHHHHHHHH----HHHHHHHHcCCCCCceEEEeCCccCc-cchHHHHHHHHhhcCHHHHHHhh----CCCCCccccccc
Q 015582 137 SVEESQRLAR----ENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKCVTYNKVVGIF----GFTGEDHIGKVS 207 (404)
Q Consensus 137 ~~e~i~~~~~----~~~~~ilA~G~dp~kt~i~~~s~~~~-~~~~~~~~~l~~~~t~~~~~~~~----g~~~~~~~g~~~ 207 (404)
+.+.++.++. ...+.++|||+||+++.||.||+|.. ..++.+++.+++++|++++++.- .+.+++++|+|+
T Consensus 90 ~~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~~r~~~~~~~g~~~ 169 (394)
T 2dlc_X 90 PLEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANPLLSGLI 169 (394)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhhhcccCCccceeee
Confidence 6677776652 33346789999999999999999974 45677888999999999998752 334678999999
Q ss_pred cccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCC
Q 015582 208 FPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 287 (404)
Q Consensus 208 YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~ 287 (404)
||+|| || |++.++.+ ++|+|.||++|++++||+++|+|+++|..+++++||+|+| |+|||||+
T Consensus 170 YP~lQ-----aa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gl~~-G~KMSKS~ 232 (394)
T 2dlc_X 170 YPLMQ-----AL--------DEQFLDVD---CQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQ-GGKMSASD 232 (394)
T ss_dssp HHHHH-----HH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCCC----------
T ss_pred chhHh-----hc--------cHhhhCCC---EEecCccHHHHHHHHHHHHHHcCCCCCEEEecccccCCCC-CCcCCCCC
Confidence 99999 99 99998875 6899999999999999999999999999999999999993 48999999
Q ss_pred CCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHh-------------------------hc-C
Q 015582 288 PNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF-------------------------FL-E 341 (404)
Q Consensus 288 ~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~-------------------------f~-~ 341 (404)
+|++|||+|+|++|++||++ |||++..+ +.+.++.|+++ ++ .
T Consensus 233 ~ns~I~L~D~p~~i~kKI~k-a~Td~~~~-----------~d~~v~~y~k~~~~p~~~~~~~~g~~~~~i~~~~~~~~~~ 300 (394)
T 2dlc_X 233 PNSKIDLLEEPKQVKKKINS-AFCSPGNV-----------EENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPI 300 (394)
T ss_dssp -CCSCBTTCCHHHHHHHHHH-SCCCTTCC-----------SSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCE
T ss_pred CCCEEeccCCHHHHHHHHHH-hcCCCCCC-----------CcchHHHHHHhhhcchhhhcccCCCceEEEeccccccCcC
Confidence 99889999999999999999 99998543 22333455443 11 1
Q ss_pred ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHH
Q 015582 342 DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM 394 (404)
Q Consensus 342 ~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~~~~~~~~ 394 (404)
+.+++++|+++|.+|.+++++||+.||++|+++|+|+|+++++..+ +++.+
T Consensus 301 ~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~~~~~--~~~~~ 351 (394)
T 2dlc_X 301 TYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNKE--FQEAS 351 (394)
T ss_dssp EESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHH--HHHHH
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHCCHH--HHHHH
Confidence 4568999999999998999999999999999999999999985432 44444
No 34
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=4.8e-57 Score=461.36 Aligned_cols=290 Identities=19% Similarity=0.213 Sum_probs=237.4
Q ss_pred hhhHHhcCc--ccccCCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC
Q 015582 58 PHVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135 (404)
Q Consensus 58 ~~~l~~Rgi--~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~ 135 (404)
.+.+++||+ +++|++++.+| ++++++++|+||+|||++|||||+++++.++|||++ |+.++++|||+||++.++
T Consensus 11 ~~~li~Rg~~e~~~~~~L~~~L---~~~~~~~vy~G~dPTg~sLHlGh~v~l~~l~~lQ~~-G~~~i~lIgD~ta~igdp 86 (432)
T 1h3f_A 11 ALALLKRGAEEIVPEEELLAKL---KEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQEL-GHKVVLIIGDFTGMIGDP 86 (432)
T ss_dssp HHHHHHTTCSEEETHHHHHHHH---HTCSCCEEEEEECTTCCSCBHHHHHHHHHHHHHHHT-TCEEEEEECCCC------
T ss_pred HHHHHHcchHHhCCHHHHHHHH---hcCCCcEEEEcccCCCCCCchhhHHHHHHHHHHHHC-CCCEEEEEccceEEecCC
Confidence 578999999 55555555444 567899999999999988999999999999999996 778888999999998642
Q ss_pred ---------CCHHHHHHHHHHHHHHHHHcCCC--CCceEEEeCCccCccchHHHHHHHHhhcCHHHHHHhhCC------C
Q 015582 136 ---------LSVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF------T 198 (404)
Q Consensus 136 ---------~~~e~i~~~~~~~~~~ilA~G~d--p~kt~i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~------~ 198 (404)
++.+++++|+..+.+.+. +|+| |++++||.||+|+++.+|..++++++++|+++|+++.+| .
T Consensus 87 sgk~~~R~~l~~e~i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~~ 165 (432)
T 1h3f_A 87 SGRSKTRPPLTLEETRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAG 165 (432)
T ss_dssp ---------------HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHTT
T ss_pred CCcccccccCCHHHHHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhcC
Confidence 678889988866655544 7888 999999999999988889999999999999999876543 3
Q ss_pred CCccccccccccccchhhhhcCCCCCCCCccccCCCCcccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCC
Q 015582 199 GEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG 278 (404)
Q Consensus 199 ~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G 278 (404)
+++|+|+|+||+|| || ||+.+++ +++|+|.||++|++++||+++|+|..+|..+++++||+|+|
T Consensus 166 ~~is~~ef~YPlLQ-----aa--------Dil~l~~---~l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG 229 (432)
T 1h3f_A 166 IPISLHELLYPFAQ-----AY--------DSVAIRA---DVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDG 229 (432)
T ss_dssp CCCBGGGGTHHHHH-----HH--------HHHHHTC---SEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTS
T ss_pred CCCCccccchhhHH-----hh--------hhhhcCc---cEEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCC
Confidence 67899999999999 99 9999987 48999999999999999999999988888889999999998
Q ss_pred CCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcchhHHHhhcCCCCcchhHHHHHHhhcC-ChHHHHHHHHHHhcCC
Q 015582 279 ETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGG 357 (404)
Q Consensus 279 ~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~pd~~v~~~~l~~f~~-~~~eleei~~~~~~G~ 357 (404)
.+|||||.+| +|||+|+|+++++||++ +. .+.+++|+++|+. +.++++++.++
T Consensus 230 -~~KMSKS~~n-~I~L~dsp~~i~~Ki~~-~~------------------d~~v~~~l~~ft~~~~eei~~~~~~----- 283 (432)
T 1h3f_A 230 -REKMSKSLDN-YIGLTEPPEAMFKKLMR-VP------------------DPLLPSYFRLLTDLEEEEIEALLKA----- 283 (432)
T ss_dssp -SSBCCGGGTC-CCBTTSCHHHHHHHHHT-SC------------------GGGHHHHHHHHCCCCHHHHHHHHHH-----
T ss_pred -ccccCcCCCC-eeCCCCCHHHHHHHHhC-CC------------------ccHHHHHHHHcCCCCHHHHHHHHhh-----
Confidence 3699999988 99999999999999999 42 1346899999863 66666666554
Q ss_pred CCHHHHHHHHHHHHHHHhh----hHHHHHHHhhHH-HHHHHHh
Q 015582 358 MLTGEVKQRLAKVLTELVE----RHQVARAAVTDE-MVDAFMA 395 (404)
Q Consensus 358 ~~~~~lK~~La~~i~~~l~----~~r~~~~~~~~~-~~~~~~~ 395 (404)
+++++|+.||++|++++| |+|++|+++++- +|++++.
T Consensus 284 -~~~~~K~~LA~~i~~~l~~~~~pirerr~~~~~~~~v~~il~ 325 (432)
T 1h3f_A 284 -GPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFG 325 (432)
T ss_dssp -CHHHHHHHHHHHHHHHHHSSSCCSCCSHHHHHHTTCCGGGTT
T ss_pred -ChHHHHHHHHHHHHHHHhcccchHHHHHHHhhchHHHHHHHh
Confidence 799999999999999999 999999988752 4444443
No 35
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=1.4e-55 Score=445.73 Aligned_cols=292 Identities=15% Similarity=0.153 Sum_probs=241.8
Q ss_pred hhhHHhcCccccc-CCHHHHHHHHHhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccccccC-
Q 015582 58 PHVFLRRGVFFAH-RDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN- 135 (404)
Q Consensus 58 ~~~l~~Rgi~~~~-~d~~~ll~~~~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~- 135 (404)
...|.+||+++++ ++.+.|.+.++ ++++++|+||+|||+|||||||++++.++|||++ |+.++++|||+||++.++
T Consensus 37 ~~~L~~Rg~~~~~~~~~e~l~~ll~-~~~~~vy~G~dPTg~sLHlGhlv~l~~l~~lQ~~-G~~~~~lIgD~haligdps 114 (392)
T 1y42_X 37 WDLFEERGYVKDTAGTKEHIAELMR-TRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLE-GYKAFTLIGGSTAKIGDPT 114 (392)
T ss_dssp HHHHHHHTCCSCEESCHHHHHHHHH-HCCCEEEEEECCCSSSCBGGGHHHHHHHHHHHHH-TCEEEEEECTTTTTTCCCC
T ss_pred HHHHHHCCcHHhhcCCHHHHHHHHc-CCCCEEEEeecCCCCCccHHHHHHHHHHHHHHHc-CCcEEEEEcCceeEeCCCC
Confidence 3688999999954 57775555454 5789999999999977999999999999999997 677888899999987543
Q ss_pred --------CCHHHHHHHHHHHHHHHHHc-----------CCC---CCceEEEeCCccCccchHHHHH-HHHhhcCHHHHH
Q 015582 136 --------LSVEESQRLARENAKDIIAC-----------GFD---VTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVV 192 (404)
Q Consensus 136 --------~~~e~i~~~~~~~~~~ilA~-----------G~d---p~kt~i~~~s~~~~~~~~~~~~-~l~~~~t~~~~~ 192 (404)
++.+++++|+..+.+.++|+ |+| |+++.||+||+|..+..+.+++ .+++++++++|.
T Consensus 115 gk~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml 194 (392)
T 1y42_X 115 GRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPML 194 (392)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHh
Confidence 58889999998887777765 456 7899999999997666677777 599999999987
Q ss_pred Hh------hCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCCccc-ccccccCchhHHHHHHHHHhHhCC---
Q 015582 193 GI------FGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRIGY--- 262 (404)
Q Consensus 193 ~~------~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~~~-~vp~G~DQd~~~~l~rdla~r~~~--- 262 (404)
++ ++..+++|+|+|+||+|| || ||+.+..+++| ++|||.||+||++++||+|+|+|.
T Consensus 195 ~~~~~k~r~~~~~~is~gef~YPlLQ-----Aa--------Dil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~ 261 (392)
T 1y42_X 195 SRDTVKNKMTQGDGVSFAEFTYPIMQ-----GW--------DWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEP 261 (392)
T ss_dssp SSHHHHHTTSSSSCCCHHHHHHHHHH-----HH--------HHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCC
T ss_pred hhhHHHHHhcCCCCcccHHHHHHHHH-----HH--------HHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhcc
Confidence 53 444568999999999999 99 99977422223 568999999999999999999853
Q ss_pred --------------CCcceeecccccCCCCCCCCCCCCCCCCeeeecC---CHHHHHHHhccccccCCcchhHHHhhcCC
Q 015582 263 --------------HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGA 325 (404)
Q Consensus 263 --------------~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D---~~~~i~~KI~kyA~t~~~~t~e~~~~~g~ 325 (404)
.+|..+++++||+|+| +|||||.+| +|||+| +|+++++||++ .
T Consensus 262 ~~~~~~~~~p~l~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~qki~~-~---------------- 321 (392)
T 1y42_X 262 DPQERKYVTPKTALDECVGFTVPLLTDSSG--AKFGKSAGN-AIWLDPYQTSVFDFYGYFVR-R---------------- 321 (392)
T ss_dssp CHHHHHHHSCCSGGGSCEEEECCCCBCTTC--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C----------------
T ss_pred ccccccccccccccCCccccccccCcCCch--hhccCCCCC-eeeccCCCCCHHHHHHHHHc-C----------------
Confidence 4677888999999998 799999877 999999 99999999998 2
Q ss_pred CCcchhHHHHHHhhc-CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHHHHHhhH
Q 015582 326 NLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 387 (404)
Q Consensus 326 ~pd~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~~~~~~~ 387 (404)
||.++ ++||++|+ .+.+++++|+++|.+|. +++++|+.||++|+++||+.++++++...
T Consensus 322 -~D~~v-~~~l~~ft~l~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~lhg~~~~~~a~~~ 381 (392)
T 1y42_X 322 -SDQEV-ENLLKLFTFMPISEITKTMEEHIKDP-SKRVAQHTLAREVVTLVHGKQEASAAEDQ 381 (392)
T ss_dssp -CTTTH-HHHHHHHCCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred -CchhH-HHHHHHHHhCChhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 23333 78888876 38899999999999996 99999999999999999999999887653
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=3.2e-48 Score=415.73 Aligned_cols=272 Identities=13% Similarity=0.125 Sum_probs=230.4
Q ss_pred CCceEEEEecCCCCCCcchhchHHHhh--HHHHHhhCCCeEEEEccCcccccccC--CCHHHHHHHHHHHHHHHHHcCCC
Q 015582 83 GEKFYLYTGRGPSSEALHLGHLVPFMF--TKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFD 158 (404)
Q Consensus 83 ~~~~~iytG~~PTg~~lHlGh~v~~~~--~~~lQ~~~~~~v~I~I~D~~a~~~~~--~~~e~i~~~~~~~~~~ilA~G~d 158 (404)
..|..++++- ||| ++||||++|+++ ..|+|.++|++++|+|||+||+++++ .+++++++++.++++.|+|+|+|
T Consensus 380 ~~~l~~~~~p-s~g-~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d 457 (690)
T 3p0j_A 380 AKPHACMWMP-ALL-KVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLP 457 (690)
T ss_dssp SSCEEEEECC-CCS-SCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcceEEecC-CCC-CcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 4577888877 676 999999999987 45677778999999999999999876 89999999999999999999999
Q ss_pred CCceEEEeCCccCcc---chHHHHHHHHhhcCHHHHHHhhCCCCCccccccccccccchhhhhcCCCCCCCCccccCCCC
Q 015582 159 VTKTFIFSDFDYVGG---AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDH 235 (404)
Q Consensus 159 p~kt~i~~~s~~~~~---~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~ 235 (404)
+ ++.|+.||+|... .+|.+++++++++|+++|++++| ++++++|+|.||+|| || |++.+++|
T Consensus 458 ~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~~-~~~~~i~~~~YPlmQ-----aa--------Di~~l~aD 522 (690)
T 3p0j_A 458 S-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG-GEVRNAGQVIAALMR-----VA--------TALMLSVS 522 (690)
T ss_dssp T-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHTT-SCCSSHHHHHHHHHH-----HH--------HHHHTTCS
T ss_pred c-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHhC-CCCcchHHHHHHHHH-----Hh--------hhhccCCC
Confidence 8 6777778888754 69999999999999999999987 678899999999999 99 99989886
Q ss_pred cccccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCHHHHHHHhccccccCCcc
Q 015582 236 LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 315 (404)
Q Consensus 236 ~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~ 315 (404)
++|+|.||++|++|+||+++|++ +|+.++++++|+|+|++.+||||+++|+|+|+|+|++|++||++ |||++.
T Consensus 523 ---i~~gG~DQ~~~~~LaRd~~~~~~--~~~~~~~~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI~k-A~c~p~- 595 (690)
T 3p0j_A 523 ---HVISTSLDGHINAFAREYTKERI--DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPN- 595 (690)
T ss_dssp ---EEEECSTTTTTTHHHHHHTTTCS--EEEECCCCSSCCSSCCCC-------CCSCBTTCCHHHHHHHHHH-SCCCTT-
T ss_pred ---EEecccccHHHHHHHHHHHHhcc--CcccccccccccCCCcccccCCCCCCCeeeccCCHHHHHHHHHH-hcCCCC-
Confidence 78999999999999999999954 67888899999999987777788888899999999999999999 999984
Q ss_pred hhHHHhhcCCCCcchhHHHHHHh----hc-C---------ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHHHH
Q 015582 316 SVELHRKLGANLEVDIPVKYLSF----FL-E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVA 381 (404)
Q Consensus 316 t~e~~~~~g~~pd~~v~~~~l~~----f~-~---------~~~eleei~~~~~~G~~~~~~lK~~La~~i~~~l~~~r~~ 381 (404)
+ .+||..+. ++|+.+ |. + +.+++++|+++|.+|+++|+|+|++||+.|+++|+|+|++
T Consensus 596 -v------e~np~l~~-~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~Re~ 667 (690)
T 3p0j_A 596 -E------EANPVISV-AQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARAL 667 (690)
T ss_dssp -C------SCSHHHHH-HHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -C------CCChHHHH-HHHHhccCCceEEechhhhCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 36775543 333321 11 1 2478999999999999999999999999999999999999
Q ss_pred HHHhh
Q 015582 382 RAAVT 386 (404)
Q Consensus 382 ~~~~~ 386 (404)
++-..
T Consensus 668 ~~~~~ 672 (690)
T 3p0j_A 668 LNGEL 672 (690)
T ss_dssp HHTTT
T ss_pred HHhhh
Confidence 98443
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.55 E-value=1.8e-07 Score=91.10 Aligned_cols=178 Identities=17% Similarity=0.203 Sum_probs=92.3
Q ss_pred CCCCCCcchhchHHHhhHHHH-HhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC
Q 015582 93 GPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (404)
-||| .|||||+..++ .+|+ .+..+..+++-|.|...- | ....+...+..++.++|++++.. ++.||+..
T Consensus 13 sPtG-~LHiG~~rtal-~n~l~Ar~~~g~~ilRieDtD~~--R-----~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~ 82 (298)
T 1nzj_A 13 SPSG-ELHFGSLIAAL-GSYLQARARQGRWLVRIEDIDPP--R-----EVPGAAETILRQLEHYGLHWDGD-VLWQSQRH 82 (298)
T ss_dssp CTTS-CCCHHHHHHHH-HHHHHHHHTTCEEEEEECCSCGG--G-----SCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCH
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHhcCCeEEEEEecCCch--h-----hHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCH
Confidence 4667 89999999995 7885 344577777778884321 1 11344557778889999999865 56777764
Q ss_pred ccchHHHHHHHHh-------hcCHHHHHHh---h-CCC-----C-------------C-----cccccccccc-ccchhh
Q 015582 172 GGAFYKNMVKVAK-------CVTYNKVVGI---F-GFT-----G-------------E-----DHIGKVSFPP-VQEMIY 216 (404)
Q Consensus 172 ~~~~~~~~~~l~~-------~~t~~~~~~~---~-g~~-----~-------------~-----~~~g~~~Ypl-lQ~~~~ 216 (404)
..|..-+-+|.. ..|..++.+. | |.- . . .-.|.+.++. .+
T Consensus 83 -~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~---- 157 (298)
T 1nzj_A 83 -DAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLA---- 157 (298)
T ss_dssp -HHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHH----
T ss_pred -HHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccC----
Confidence 223222222211 1344555432 1 100 0 0 0012222221 11
Q ss_pred hhcCCCCCCCCccccCCCCc-c---------------cccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCC
Q 015582 217 KAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGET 280 (404)
Q Consensus 217 ~aa~~~~~~~~Di~~~~~~~-~---------------~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~ 280 (404)
. .|+...++|- | +.|.-|.|+..+-..-+.+...+|.+.|...|.+++.+.+|
T Consensus 158 -~--------~D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g-- 226 (298)
T 1nzj_A 158 -R--------EDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG-- 226 (298)
T ss_dssp -H--------SCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC-----
T ss_pred -C--------CCEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC--
Confidence 2 2666555441 0 11223888776554445566889999998888888888886
Q ss_pred CCCCCCCCCCeeeecC
Q 015582 281 GKMSASDPNSAIYVTD 296 (404)
Q Consensus 281 ~KMSkS~~nsaI~L~D 296 (404)
+||||+.++.+|--.+
T Consensus 227 ~KLSKR~g~~~v~~~~ 242 (298)
T 1nzj_A 227 AKLSKQNHAPALPKGD 242 (298)
T ss_dssp ----------CCCSSC
T ss_pred CcccccCCccChhcCC
Confidence 8999998875544333
No 38
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.49 E-value=3.2e-07 Score=94.51 Aligned_cols=188 Identities=10% Similarity=0.079 Sum_probs=114.0
Q ss_pred CCCCCCcchhchHHHhhHHHH-HhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 015582 93 GPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 164 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~-------i 164 (404)
.||| .|||||+..++ .+|+ .+..|..+++-|-|...- .+ ...+...++.++..+|++++... .
T Consensus 9 sPtG-~LHiG~~rtal-~n~l~Ar~~~G~filRieDtD~~----R~---~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp 79 (468)
T 1j09_A 9 SPTG-DPHVGTAYIAL-FNYAWARRNGGRFIVRIEDTDRA----RY---VPGAEERILAALKWLGLSYDEGPDVGGPHGP 79 (468)
T ss_dssp CCSS-SCBHHHHHHHH-HHHHHHHHTTCEEEECBCCCCTT----SC---CTTHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEeCcCCCc----cc---ChHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence 4777 89999999995 6774 445677777778775321 11 12334466788889999998653 4
Q ss_pred EeCCccCccchHHHHHHH-----------------------------HhhcCHHHHHHhh--CC--------CC--Ccc-
Q 015582 165 FSDFDYVGGAFYKNMVKV-----------------------------AKCVTYNKVVGIF--GF--------TG--EDH- 202 (404)
Q Consensus 165 ~~~s~~~~~~~~~~~~~l-----------------------------~~~~t~~~~~~~~--g~--------~~--~~~- 202 (404)
|.||+... .|+.-+-++ +|..|..+..+.. |. .. ...
T Consensus 80 ~~QS~r~~-~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~ 158 (468)
T 1j09_A 80 YRQSERLP-LYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEV 158 (468)
T ss_dssp CBGGGCHH-HHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEE
T ss_pred eeccCCHH-HHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEE
Confidence 78887752 222111111 2233444333221 21 00 011
Q ss_pred ----ccccccccccchhhhhcCCCCCCCCccccCCCCc-c---------------cccccccCchhHHHHHHHHHhHhCC
Q 015582 203 ----IGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGY 262 (404)
Q Consensus 203 ----~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~-~---------------~~vp~G~DQd~~~~l~rdla~r~~~ 262 (404)
.|.+.++..+ .- |+..++.|. | +.|..|.|+..+-..-+-+.+.+|.
T Consensus 159 ~D~~~G~~~~~~~~-----~~--------D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~ 225 (468)
T 1j09_A 159 KDELRGVVVYDNQE-----IP--------DVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGW 225 (468)
T ss_dssp EETTTEEEEEEGGG-----SC--------CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTC
T ss_pred EeccceeEeecccC-----CC--------CeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCC
Confidence 2345555444 43 776666541 0 1233499988888777888899999
Q ss_pred CCcceeecccccCCCCCCCCCCCCCCCCeeeecC------CHHHHHHHhcc
Q 015582 263 HKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 307 (404)
Q Consensus 263 ~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~~~~i~~KI~k 307 (404)
+.|...+.+++.+.+| .||||+.++.+ |.+ .|+.|.+-+..
T Consensus 226 ~~p~~~h~~li~~~~g--~klSKR~g~~~--l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 226 EAPRFYHMPLLRNPDK--TKISKRKSHTS--LDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp CCCEEEEECCCBCTTS--CBCCTTTSCCB--HHHHHHTTCCHHHHHHHHHH
T ss_pred CCCeEEEeeeeeCCCC--Cccccccchhh--HHHHHHCCCCHHHHHHHHHH
Confidence 8887777777777776 89999998753 332 57777665544
No 39
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.45 E-value=1.8e-06 Score=89.39 Aligned_cols=189 Identities=13% Similarity=0.152 Sum_probs=110.4
Q ss_pred CCCCCCcchhchHHHhhHHHH-HhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC
Q 015582 93 GPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (404)
-||| .|||||+..++ .+|+ .+..|..+++-|.|... ..+ ...+...+..++..+|++++. .++.||+..
T Consensus 9 SPtG-~lHiG~artal-~n~l~Ar~~~G~filRieDtD~----~R~---~~~~~~~i~~dL~wLGl~wde-~~~~QS~r~ 78 (492)
T 2cfo_A 9 SPTG-NLHIGTARTAV-FNWLYARHRGGKFILRIEDTDR----ERS---RPEYTENILEGLQWLGLTWDE-GPYFQSDRL 78 (492)
T ss_dssp CTTS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCSS----SSC---CHHHHHHHHHHHHHTTCCCSE-EEEEGGGCH
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHhcCCeEEEEEeeCCc----ccc---chHHHHHHHHHHHHcCCCCCC-CCccccCCH
Confidence 4677 89999999995 5774 44567788888888642 111 134455777888899999875 367888765
Q ss_pred ccchHHHHHHHH-----------------------------------hhcCHHHHHHh--hCC--------CCC--c---
Q 015582 172 GGAFYKNMVKVA-----------------------------------KCVTYNKVVGI--FGF--------TGE--D--- 201 (404)
Q Consensus 172 ~~~~~~~~~~l~-----------------------------------~~~t~~~~~~~--~g~--------~~~--~--- 201 (404)
. .|+.-+-++- +..+..+..+. .|. ... +
T Consensus 79 ~-~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~ 157 (492)
T 2cfo_A 79 D-LYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQ 157 (492)
T ss_dssp H-HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEE
T ss_pred H-HHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEE
Confidence 2 2222111111 11111111110 010 000 0
Q ss_pred --cccccccccccchhhhh-cCCCCCCCCccccCCCC------cc---------------cccccccCchhHHHHHHHHH
Q 015582 202 --HIGKVSFPPVQEMIYKA-VPSFPSSFPHLFSGKDH------LR---------------CLIPCAIDQDPYFRMTRDVA 257 (404)
Q Consensus 202 --~~g~~~YpllQ~~~~~a-a~~~~~~~~Di~~~~~~------~~---------------~~vp~G~DQd~~~~l~rdla 257 (404)
-.|.+.++.-+ . - |+...++| .| +.|..|.|+..+-..-+.+.
T Consensus 158 D~v~G~~~~~~~~-----~~~--------D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~ 224 (492)
T 2cfo_A 158 DLVRGRVSWQGAD-----LGG--------DMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLY 224 (492)
T ss_dssp ETTTEEEEEEGGG-----GCS--------SEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHH
T ss_pred ecceeeeeecccc-----cCC--------CeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHH
Confidence 01223333333 2 2 55555544 21 34557888777766667777
Q ss_pred hHhCCCCcceeecccccCCCCCCCCCCCCCCCCeee-ecC---CHHHHHHHhcc
Q 015582 258 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK 307 (404)
Q Consensus 258 ~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~-L~D---~~~~i~~KI~k 307 (404)
+.+|.+.|...|.+++.+.+| +|||||.++.+|- +.+ .|+.|.+-+..
T Consensus 225 ~alg~~~P~~~H~plil~~~g--~KLSKr~g~~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 225 EALGATPPNFAHTPLILNSTG--QKLSKRDGVTSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp HHTTCCCCEEEEECCEECSSS--SBCCTTSSCCBHHHHHHTTCCHHHHHHHHHH
T ss_pred HHcCCCCceEEEeeeEECCCC--CEecccCCcccHHHHHHCCCCHHHHHHHHHH
Confidence 899998898888899899887 8999999875331 111 46666655544
No 40
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.29 E-value=2.1e-06 Score=89.01 Aligned_cols=188 Identities=12% Similarity=0.106 Sum_probs=109.3
Q ss_pred CCCCCCcchhchHHHhhHHHH-HhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EE
Q 015582 93 GPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-------FI 164 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt-------~i 164 (404)
.||| .|||||+...+ .+|+ .+..|..+++-|-|... ..+. ..+...++.++..+|++++.. -+
T Consensus 14 sPTG-~LHiG~~rtAL-~n~l~Ar~~gG~fiLRieDtD~----~R~~---~~~~~~I~~~L~wlGl~wDegp~~gG~~~~ 84 (498)
T 2ja2_A 14 SPTG-TPHVGLVRTAL-FNWAYARHTGGTFVFRIEDTDA----QRDS---EESYLALLDALRWLGLDWDEGPEVGGPYGP 84 (498)
T ss_dssp CSSS-SCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCCT----TTCC---HHHHHHHHHHHHHHTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCC----cccC---hHHHHHHHHHHHHcCCCcCCCcCcCCCCCC
Confidence 5677 89999999995 6773 34445566666777532 1121 234446777888899999863 47
Q ss_pred EeCCccCccchHHHHHHH---H-------------------------------hhcCHHHHHHhh--CCC------C---
Q 015582 165 FSDFDYVGGAFYKNMVKV---A-------------------------------KCVTYNKVVGIF--GFT------G--- 199 (404)
Q Consensus 165 ~~~s~~~~~~~~~~~~~l---~-------------------------------~~~t~~~~~~~~--g~~------~--- 199 (404)
|.||+... .|+.-+-++ + |..+..+..+.. |.. -
T Consensus 85 ~~QS~r~~-~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~ 163 (498)
T 2ja2_A 85 YRQSQRAE-IYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDD 163 (498)
T ss_dssp CBGGGCHH-HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSS
T ss_pred eeeecCHH-HHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCC
Confidence 88888752 222111111 1 111222211111 100 0
Q ss_pred Cc-----cccccccccccchhhhhcCCCCCCCCccccCCCCc-c---------------cccccccCchhHHHHHHHHHh
Q 015582 200 ED-----HIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAP 258 (404)
Q Consensus 200 ~~-----~~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~~-~---------------~~vp~G~DQd~~~~l~rdla~ 258 (404)
.. -.|.+.++.-+ . .|+...++|. | +.|..|.|+..+....+-+.+
T Consensus 164 ~~~~~D~v~G~i~~~~~~-----~--------~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~ 230 (498)
T 2ja2_A 164 DLAWNDLVRGPVTFAAGS-----V--------PDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQ 230 (498)
T ss_dssp CEEEEETTTEEEEECTTC-----S--------CCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHH
T ss_pred ceEEEecccceEeecccc-----c--------CcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHH
Confidence 00 01233333333 2 2666665541 1 123349999998877788888
Q ss_pred Hh-----CCCCcceeecccccCCCCCCCCCCCCCCCCeeeecC------CHHHHHHHhcc
Q 015582 259 RI-----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 307 (404)
Q Consensus 259 r~-----~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~~~~i~~KI~k 307 (404)
.+ |.+.|...+.+++.+.+| +||||+.++.+ |.+ .|+.|.+-+..
T Consensus 231 aL~~~g~g~~~P~~~h~plil~~~g--~KLSKR~g~~~--l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 231 ALIRIGVAERIPKFAHLPTVLGEGT--KKLSKRDPQSN--LFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp HHHHTTSCCCCCEEEEECCEECSSS--SBCCTTSGGGB--HHHHHHHTCCHHHHHHHHHT
T ss_pred HHHhhcCCCCCCeEEEeeeeECCCC--CcccccCCccc--HHHHHhCCCCHHHHHHHHHH
Confidence 88 998898888888888886 89999987633 332 46666655543
No 41
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.16 E-value=2.3e-06 Score=88.54 Aligned_cols=189 Identities=12% Similarity=0.160 Sum_probs=110.3
Q ss_pred ecCCCCCCcchhchHHHhhHHHH-HhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE------
Q 015582 91 GRGPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF------ 163 (404)
Q Consensus 91 G~~PTg~~lHlGh~v~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~------ 163 (404)
.=.||| .|||||+..++ .+|+ .+..|..+++-|-|... ..+ +..+...+..++..+|++++...
T Consensus 31 APsPtG-~LHiG~~rtal-~n~l~Ar~~~G~filRieDtD~----~R~---~~~~~~~I~~dL~wlGl~wDe~~~~gG~~ 101 (488)
T 3afh_A 31 APSPTG-HLHVGGARTAL-FNWMFARKEGGKFILRIEDTDT----ERS---SREYEQQILESLRWCGLDWDEGPDIGGDF 101 (488)
T ss_dssp CCCCSS-SCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCCT----TTC---CHHHHHHHHHHHHHTTCCCSBBTTTBCTT
T ss_pred CCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEEeeCCc----ccc---cHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 345677 89999999995 6774 34456677777777532 111 23344467788889999998653
Q ss_pred -EEeCCccCccchHHHHH-HHHhh---c----CHHHHH-------------HhhCC--------CC-Cc-----cccccc
Q 015582 164 -IFSDFDYVGGAFYKNMV-KVAKC---V----TYNKVV-------------GIFGF--------TG-ED-----HIGKVS 207 (404)
Q Consensus 164 -i~~~s~~~~~~~~~~~~-~l~~~---~----t~~~~~-------------~~~g~--------~~-~~-----~~g~~~ 207 (404)
.|.||+.. . .|..++ ++-.. . |-.++. ...|. .+ .. -.|.+.
T Consensus 102 gp~~QSer~-~-~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~ 179 (488)
T 3afh_A 102 GPYRQSERL-E-IYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 179 (488)
T ss_dssp CCCBGGGCH-H-HHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEE
T ss_pred CCeeeeCCH-H-HHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEe
Confidence 57788765 2 333322 22111 0 000000 01111 10 00 123333
Q ss_pred cccccchhhhhcCCCCCCCCccccCCCCc-c---------------cccccccCchhHHHHHHHHHhHhCCCCcceeecc
Q 015582 208 FPPVQEMIYKAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS 271 (404)
Q Consensus 208 YpllQ~~~~~aa~~~~~~~~Di~~~~~~~-~---------------~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~ 271 (404)
++.-+ .- |+...++|. | +.|..|.|+..+--.-+-+.+.+|.+.|...|.+
T Consensus 180 ~~~~~-----~~--------D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~p 246 (488)
T 3afh_A 180 FDNST-----LE--------DFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIP 246 (488)
T ss_dssp EEGGG-----SC--------CEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEEC
T ss_pred ecCCC-----CC--------CeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEe
Confidence 33322 22 544444321 0 1234599988887777888899999999888888
Q ss_pred cccCCCCCCCCCCCCCCCCeeeecC------CHHHHHHHhcc
Q 015582 272 FFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 307 (404)
Q Consensus 272 ~lp~L~G~~~KMSkS~~nsaI~L~D------~~~~i~~KI~k 307 (404)
++.+.+| +||||++++. .|.+ .|+.|.+-+..
T Consensus 247 li~~~~g--~KLSKR~g~~--~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 247 LILGSDR--TPLSKRHGAT--SVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp CEECTTS--SBCCTTTSCC--BHHHHHHHTCCHHHHHHHHHH
T ss_pred eeeCCCC--CcccCcCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 8888886 8999998763 3333 57777666544
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.14 E-value=5.9e-06 Score=87.42 Aligned_cols=194 Identities=12% Similarity=0.170 Sum_probs=114.2
Q ss_pred eEEEEecCCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-
Q 015582 86 FYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF- 163 (404)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~- 163 (404)
+++=..=-||| .|||||+..++ .+| +.+..|..+++-|.|.. ...+ +..+...+..++..+|++++...
T Consensus 130 v~~RFaPsPTG-~LHiG~artAl-~n~l~Ar~~~G~~ilRieDtD----~~r~---~~~~~~~I~~dL~wlGl~~D~~~~ 200 (592)
T 3al0_C 130 VRVRFAPSPTG-HLHVGGARTAL-FNWMFARKEGGKFILRIEDTD----TERS---SREYEQQILESLRWCGLDWDEGPD 200 (592)
T ss_dssp CEEEECCCSSS-CCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCC----SSSC---CHHHHHHHHHHHHHTTCCCSBBTT
T ss_pred EEEEECCCCCC-CccHHHHHHHH-HHHHHHHhcCCcEEEEecCcC----hhhc---cHHHHHHHHHHHHHcCCCCCCCCC
Confidence 33333356787 89999999995 677 44555777777788743 1222 23334467788889999998643
Q ss_pred ------EEeCCccCccchHHHHHHHH-h--hc----C-----------H---HHHHHhhCC--------C-CC-----cc
Q 015582 164 ------IFSDFDYVGGAFYKNMVKVA-K--CV----T-----------Y---NKVVGIFGF--------T-GE-----DH 202 (404)
Q Consensus 164 ------i~~~s~~~~~~~~~~~~~l~-~--~~----t-----------~---~~~~~~~g~--------~-~~-----~~ 202 (404)
.|.||+.. ..|..-+-++. + .. | + .+.. ..|. . .. .-
T Consensus 201 ~gG~~gp~~qSer~-~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~-~~g~~~~iR~k~~~~~~~~~D~v 278 (592)
T 3al0_C 201 IGGDFGPYRQSERL-EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYK-EKGHPVTIKFKVLPGKTSFEDLL 278 (592)
T ss_dssp TBCTTCCCBSTTCH-HHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHH-HTTCCEEEEECCCSSCCEECCTT
T ss_pred cCCCCCCeeeeCCH-HHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHh-hcCCCceEEEECCCCCceeeecc
Confidence 57788765 22222222221 1 11 0 0 0000 1110 1 00 11
Q ss_pred ccccccccccchhhhhcCCCCCCCCccccCCCC-cc---------------cccccccCchhHHHHHHHHHhHhCCCCcc
Q 015582 203 IGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDH-LR---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPA 266 (404)
Q Consensus 203 ~g~~~YpllQ~~~~~aa~~~~~~~~Di~~~~~~-~~---------------~~vp~G~DQd~~~~l~rdla~r~~~~kp~ 266 (404)
.|.+.++.-+ .- |+...++| .| +.|..|.|+..+--..+-+.+.+|.+.|.
T Consensus 279 ~G~~~~~~~~-----~~--------D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~ 345 (592)
T 3al0_C 279 KGYMEFDNST-----LE--------DFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPV 345 (592)
T ss_dssp TCSEECCSSS-----SC--------CEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCB
T ss_pred cceeeecccc-----CC--------CeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCe
Confidence 2334443333 22 55544443 11 23446999988888888888999998898
Q ss_pred eeecccccCCCCCCCCCCCCCCCCeeeecC------CHHHHHHHhcc
Q 015582 267 LIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 307 (404)
Q Consensus 267 ~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~~~~i~~KI~k 307 (404)
..|.+++.+.+| .||||+.++. .|.+ .|+.|.+-+..
T Consensus 346 ~~hlpli~~~~g--~KLSKR~g~~--~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 346 FMHIPLILGSDR--TPLSKRHGAT--SVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp CCEECCCBCTTS--SBCCTTTCSS--BHHHHHHTTCCHHHHHHHHTT
T ss_pred EEEeeeeeCCCC--CcccccCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 778888888886 8999998863 3332 57777766644
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.74 E-value=0.00058 Score=70.53 Aligned_cols=64 Identities=14% Similarity=0.043 Sum_probs=47.0
Q ss_pred cccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecC------CHHHHHHHhcc
Q 015582 240 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 307 (404)
Q Consensus 240 vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D------~~~~i~~KI~k 307 (404)
|..|.||..+...-.-+.+.+|.+.|...|.+++...+| +||||+.++. .|.+ .|+.|.+-+..
T Consensus 222 virG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G--~KLSKR~g~~--~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 222 VIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDG--KKLSKRHGAT--SVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp EEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCGGGSCC--BHHHHHHHTCCHHHHHHHHHT
T ss_pred EEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCC--CcccCcCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 458999888877778888999998888777777777776 7999998874 3332 46666554443
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.56 E-value=0.0017 Score=67.05 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=47.2
Q ss_pred CCCCCCcchhchHHHhhHHHH-HhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCccC
Q 015582 93 GPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 93 ~PTg~~lHlGh~v~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (404)
-||| .+||||+..++ .+|+ .+..+..+++-|-|...- | . ...+...+..++..+|++++. ..+.||+..
T Consensus 33 SPTG-~lHiG~~rtal-~n~l~Ar~~~G~filRieDtD~~--R-~----~~~~~~~i~~dl~wlGl~~d~-~~~~qS~r~ 102 (490)
T 4g6z_A 33 SPTG-FIHLGNIRSAL-YPWAFARKMKGTFVLRIEDTDVE--R-S----SQEAVDAILEGMAWLGLDYDE-GPYYQMQRM 102 (490)
T ss_dssp CCCS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCGG--G-C----CHHHHHHHHHHHHHTTCCCSE-EEEEGGGCH
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHhcCCeEEEEeCCCCcc--c-c----cHHHHHHHHHHHHHcCCCCCC-CCcccccCH
Confidence 4556 89999999985 5774 455677777778774321 1 1 234555777888899999975 367888764
No 45
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.41 E-value=0.00046 Score=72.07 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=50.5
Q ss_pred EEEecCC--CCCCcchhchHHHhhHHHH-HhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015582 88 LYTGRGP--SSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (404)
Q Consensus 88 iytG~~P--Tg~~lHlGh~v~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (404)
+.|=|.| || .|||||+-.++ ++|+ .+.+|..+++-|.|.-.- + . ...+...+..++..+|++++ .+
T Consensus 97 v~tRFaPsPtG-~LHIGhaRtal-~n~l~Ar~~~G~~iLRieDtD~~--R-~----~~e~~~~I~edL~wLGl~wd--~~ 165 (553)
T 3aii_A 97 VVLRFAPNPSG-PLHIGHARAAI-LNHEYARKYDGRLILRIEDTDPR--R-V----DPEAYDMIPADLEWLGVEWD--ET 165 (553)
T ss_dssp CEEEECCCSSS-SCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCGG--G-C----CTTHHHHHHHHHHHHTCCCS--EE
T ss_pred eEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCcc--c-c----cHHHHHHHHHHHHHcCCCCC--CC
Confidence 3345554 56 89999999995 5774 555788888878875321 1 1 22444566788888999996 57
Q ss_pred EeCCccC
Q 015582 165 FSDFDYV 171 (404)
Q Consensus 165 ~~~s~~~ 171 (404)
+.||+.+
T Consensus 166 ~~qSdr~ 172 (553)
T 3aii_A 166 VIQSDRM 172 (553)
T ss_dssp EEGGGGH
T ss_pred cccccCH
Confidence 8898876
No 46
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=97.35 E-value=0.00059 Score=71.11 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=32.1
Q ss_pred ccccCchhH---HHHHHHHH-hHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecC-----CHHHHHHHhcc
Q 015582 241 PCAIDQDPY---FRMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 307 (404)
Q Consensus 241 p~G~DQd~~---~~l~rdla-~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D-----~~~~i~~KI~k 307 (404)
.+|.|+... ......++ .-+|.+.|..++..+|.. .|.|+|||||.+| .|.+.| .|+.++.=+..
T Consensus 235 ~~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~-~g~g~KmSKs~Gn-~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 235 PAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGI-KGQKGKMSGSKGN-VILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp CEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEE-SCC---------C-CCCHHHHHTTSCHHHHHHHHHS
T ss_pred CCCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEe-CCCCCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHHh
Confidence 557776551 11334555 557877787677776655 3235899999998 665443 56666655544
No 47
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=96.69 E-value=0.044 Score=56.86 Aligned_cols=49 Identities=10% Similarity=0.007 Sum_probs=37.8
Q ss_pred ccccccCchhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCC
Q 015582 239 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 289 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~n 289 (404)
.|..|.|.-..--.-+-|.+-+|.+.|...|.+++.+-+| +|+||.++.
T Consensus 232 HViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g--~kLSKR~~~ 280 (512)
T 4gri_A 232 HVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDG--QKLSKRHGS 280 (512)
T ss_dssp EEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--SBCCTTTSC
T ss_pred eeccccccccccHHHHHHHHHcCCCCCeEEecchhccccc--cccCccccc
Confidence 4666777665544446677889999999888988888876 899999764
No 48
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=93.54 E-value=0.14 Score=53.51 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=54.1
Q ss_pred HHHHhCCceEEEEec--CCCCCCcchhchHHHhhHHH-HHhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHH
Q 015582 78 DAYEKGEKFYLYTGR--GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA 154 (404)
Q Consensus 78 ~~~~~~~~~~iytG~--~PTg~~lHlGh~v~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA 154 (404)
+.+++|+.-.+.|=| .||| .|||||+-.++ .+| +.+.+|..+++-|.|.-.- .. ...+...+..++..
T Consensus 17 ~dl~~~~~~~v~tRFaPSPtG-~LHIGhaRtal-~n~l~Ar~~gG~fiLRieDTD~~---R~----~~e~~~~I~edL~w 87 (553)
T 1qtq_A 17 EDLASGKHTTVHTRFPPEPNG-YLHIGHAKSIC-LNFGIAQDYKGQCNLRFDDTNPV---KE----DIEYVESIKNDVEW 87 (553)
T ss_dssp HHHHHTSCSSCEEEECCCTTS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCGG---GC----CHHHHHHHHHHHHH
T ss_pred hHhhcCCcCceEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECCCCch---hc----CHHHHHHHHHHHHH
Confidence 345555432344444 5567 89999999985 577 4455777888778775321 11 23444567788888
Q ss_pred cCCCCCceEEEeCCccC
Q 015582 155 CGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 155 ~G~dp~kt~i~~~s~~~ 171 (404)
+|++++. .++.||+..
T Consensus 88 LGl~wde-~~~~qSer~ 103 (553)
T 1qtq_A 88 LGFHWSG-NVRYSSDYF 103 (553)
T ss_dssp TTCCCSS-SCEEGGGGH
T ss_pred cCCCCCC-CCeehcccH
Confidence 9999853 357788776
No 49
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=92.33 E-value=0.035 Score=56.89 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=37.8
Q ss_pred ccccccCchhHHHHHHHHHhHhCCCCcce--eeccccc-CCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMTRDVAPRIGYHKPAL--IESSFFP-ALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r~~~~kp~~--l~~~~lp-~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+-.+|.||..|+.-...+++.+|++.+.. +...++. +-+|.+.|||||.+| .|++.|
T Consensus 239 Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn-~v~l~d 298 (464)
T 3fnr_A 239 INIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN-FILMSD 298 (464)
T ss_dssp EEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS-SCBHHH
T ss_pred EEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC-CCCHHH
Confidence 33689999999998888999999865432 2234442 224433599999998 888766
No 50
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=91.77 E-value=0.36 Score=52.74 Aligned_cols=84 Identities=21% Similarity=0.326 Sum_probs=55.7
Q ss_pred HHHHhCCceEEEE--ecCCCCCCcchhchHHHhhHHHH-HhhCCCeEEEEccCcccccccCCCHHHHHHHHHHHHHHHHH
Q 015582 78 DAYEKGEKFYLYT--GRGPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA 154 (404)
Q Consensus 78 ~~~~~~~~~~iyt--G~~PTg~~lHlGh~v~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA 154 (404)
+.++.|+.-.+.| +=.||| .|||||+-.++ .+|+ .+.+|..+++-|.|.-- ... ...+...+..++..
T Consensus 57 ~dl~~g~~~~v~tRFaPSPtG-~LHIGhARtAL-~n~l~Ar~~gG~fiLRIEDTD~----~R~---~~e~~~~IledL~w 127 (851)
T 2hz7_A 57 RDLEAGKYPRVVTRFPPDPSG-YAHLGHVFASL-LDFNTARQYGGQFNLRMDDTNP----ELA---RQEYVDSIADDLKW 127 (851)
T ss_dssp HHHHTTSCSSCEEEECCCSSS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCT----TTC---CHHHHHHHHHHHHH
T ss_pred HHhhcCCcCceEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCc----ccc---cHHHHHHHHHHHHH
Confidence 3456655333455 455667 89999999995 5774 45578888887887532 111 23455567788888
Q ss_pred cCCCCCceEEEeCCccC
Q 015582 155 CGFDVTKTFIFSDFDYV 171 (404)
Q Consensus 155 ~G~dp~kt~i~~~s~~~ 171 (404)
+|++++. .++.||+.+
T Consensus 128 LGl~wde-~~~~qSer~ 143 (851)
T 2hz7_A 128 LGLDWGE-HFYYASDYF 143 (851)
T ss_dssp HTCCCTT-CEEEGGGGH
T ss_pred cCCCCCC-CcccHhhhH
Confidence 9999854 367788776
No 51
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=90.91 E-value=0.45 Score=49.19 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=46.8
Q ss_pred HhCCceEEEEec-CCCCCCcchhchHHHh---hHHHHHhhCCCeEEEEccCcc-c--ccc----cCCCHHH-HHHHHHHH
Q 015582 81 EKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE-K--CMW----KNLSVEE-SQRLAREN 148 (404)
Q Consensus 81 ~~~~~~~iytG~-~PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~D~~-a--~~~----~~~~~e~-i~~~~~~~ 148 (404)
++.++|+|-|.+ =++| .+||||....+ ++.++++.-|..|..+-|.++ + ... ...+..+ +.++..+.
T Consensus 6 ~~~k~f~Ittp~pY~nG-~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~ 84 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNA-APHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEF 84 (542)
T ss_dssp -CCCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCC-chhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345677776663 4677 89999988764 223334444666665545444 2 211 1356555 45555666
Q ss_pred HHHHHHcCCCCC
Q 015582 149 AKDIIACGFDVT 160 (404)
Q Consensus 149 ~~~ilA~G~dp~ 160 (404)
.+++.++|++.+
T Consensus 85 ~~~~~~lgi~~D 96 (542)
T 3u1f_A 85 KKCFEQMDYSID 96 (542)
T ss_dssp HHHHHHHTCCCS
T ss_pred HHHHHHhCCccC
Confidence 677778888654
No 52
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=90.10 E-value=0.14 Score=52.46 Aligned_cols=73 Identities=16% Similarity=0.056 Sum_probs=41.2
Q ss_pred EEEEecC--CCCCCcchhchHHHh---hHHHHHhhCCCeEEEEcc-Ccccc-cc-----cCCCHHH-HHHHHHHHHHHHH
Q 015582 87 YLYTGRG--PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKC-MW-----KNLSVEE-SQRLARENAKDII 153 (404)
Q Consensus 87 ~iytG~~--PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~-D~~a~-~~-----~~~~~e~-i~~~~~~~~~~il 153 (404)
++.+|-- ||| .+||||+...+ .+.++++..|..|..+.+ |.++. +. ...+..+ +.++.....+++.
T Consensus 7 ~~i~~p~py~ng-~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 7 FYVTTPIYYVND-VPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCC-ccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455554 558 89999988764 222334445666554422 22221 11 1245544 4445556667788
Q ss_pred HcCCCCC
Q 015582 154 ACGFDVT 160 (404)
Q Consensus 154 A~G~dp~ 160 (404)
++|++++
T Consensus 86 ~lgi~~d 92 (497)
T 2csx_A 86 FLKIEYT 92 (497)
T ss_dssp HTTCCCS
T ss_pred HhCCcCC
Confidence 8999887
No 53
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=89.32 E-value=0.18 Score=51.58 Aligned_cols=55 Identities=15% Similarity=-0.054 Sum_probs=33.7
Q ss_pred ccccccCchhHHH-HHHHHHhHhCCCCcc-eeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFR-MTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~-l~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+..+|.||..+.- +-.-....+|.+.|. .+++.++..-+ |+|||||.+| .|.+.|
T Consensus 254 i~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~--G~KMSKS~GN-~i~p~d 310 (500)
T 2d5b_A 254 WHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPD--GRKMSKTLGN-VVDPFA 310 (500)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTT--SSCCCTTTTC-CCCHHH
T ss_pred EEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCC--CCcccccCCC-CCCHHH
Confidence 5678999887321 111122335765554 34566665435 4899999998 887654
No 54
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=87.13 E-value=0.18 Score=52.70 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=32.8
Q ss_pred ccccccCchhHHHHH-HHHHhHhCCCCccee-ecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~-rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+..+|.||..+..+- --+...+|.+.|..+ .+.++ ... |+|||||.+| .|++.|
T Consensus 297 v~~~GkDii~FH~~~wpa~L~a~g~~~~~~v~~hg~v-~~~--G~KMSKS~GN-vV~p~d 352 (564)
T 3kfl_A 297 VHVVGKDILKFHAIYWPAFLMSAELPLPERLVSHGWW-TKD--HKKISKSLGN-AFDPVE 352 (564)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCE-EET--TEECCTTTTC-CCCHHH
T ss_pred eEEEeecccchHHHHHHHHHHhCCCCCCcEEEEcccE-eeC--CccccccCCC-CCCHHH
Confidence 567899998842221 011122466555443 35666 455 4899999998 887644
No 55
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=85.71 E-value=0.33 Score=50.16 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=30.2
Q ss_pred ccccccCchhHHH---HHHHHHhHhCCCCccee-ecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFR---MTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~---l~rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||-.+.. .++-++ .|.+.|..+ ++.++. .. |+|||||.+| .|...|
T Consensus 281 ~~~~G~D~~~fh~~~~~a~l~~--~g~~~~~~v~~hg~l~-~~--G~KMSKSlGN-vi~p~~ 336 (542)
T 3u1f_A 281 VHVIGKDILKFHAIYWPAFLLS--AGLPLPKKIVAHGWWT-KD--RKKISKSLGN-VFDPVE 336 (542)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--HTCCCCSCEEEECCCE-ET--TBCCBTTTTB-CCCHHH
T ss_pred EEEecccccccccchhHHHHHh--hcccccceecccccee-cC--CceeccccCC-CCChhH
Confidence 4467999876532 223333 355444433 344432 34 5999999998 776443
No 56
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=85.14 E-value=0.39 Score=52.47 Aligned_cols=55 Identities=25% Similarity=0.279 Sum_probs=32.7
Q ss_pred ccccccCchh-HHHHHHHHHhHh-CCCCcc-eeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDP-YFRMTRDVAPRI-GYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~-~~~l~rdla~r~-~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||.. |+........-+ +.+.+. .+.+.++...+| +|||||.+| .|.+.|
T Consensus 547 l~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G--~KMSKS~GN-vV~p~d 604 (821)
T 1ile_A 547 FIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKG--QKMSKSKGN-VVDPWD 604 (821)
T ss_dssp BEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTS--SCCCTTTTC-CCCHHH
T ss_pred cccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCC--CCCCccCCC-CCCHHH
Confidence 4457999863 543333333322 332333 334667666675 899999998 776543
No 57
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=83.93 E-value=0.17 Score=53.33 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=35.2
Q ss_pred ccccccCchhHHHHHHHHHhHhCCCCc--ceee--cccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMTRDVAPRIGYHKP--ALIE--SSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r~~~~kp--~~l~--~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+--.|.||..|+.....++..+|++.+ ...| +.+|. +. |+|||||.+| .|.+.|
T Consensus 350 iyV~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~-~~--g~KMSKr~Gn-~v~l~d 407 (592)
T 1iq0_A 350 INVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LE--GRQMSGRKGL-AVSVDE 407 (592)
T ss_dssp EEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ET--TBCSCC-----CCBHHH
T ss_pred EEEEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEE-cC--CCcccCCCCC-ccCHHH
Confidence 335799999999988899999998542 2223 23443 34 4899999998 887765
No 58
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=83.37 E-value=0.35 Score=50.07 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=41.0
Q ss_pred ceEEEEecCC--CCCCcchhchHHHhh---HHHHHhhCCCeEEEE-ccCcccc-cc-----cCCCHHHHH-HHHHHHHHH
Q 015582 85 KFYLYTGRGP--SSEALHLGHLVPFMF---TKYLQDAFKVPLVIQ-LTDDEKC-MW-----KNLSVEESQ-RLARENAKD 151 (404)
Q Consensus 85 ~~~iytG~~P--Tg~~lHlGh~v~~~~---~~~lQ~~~~~~v~I~-I~D~~a~-~~-----~~~~~e~i~-~~~~~~~~~ 151 (404)
+++ .||--| || .+||||+.+.+. +.++++..|..|..+ =.|++.. +. ...+++++. ++.....++
T Consensus 26 ~~~-i~~p~pypng-~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 103 (536)
T 4dlp_A 26 KYY-ITTAIAYPNG-KPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRM 103 (536)
T ss_dssp EEE-EEECCBCCSS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CEE-EeCCCCCCCC-CcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 444 455544 47 799999877642 233334456666543 3444432 11 135555543 344455566
Q ss_pred HHHcCCCCC
Q 015582 152 IIACGFDVT 160 (404)
Q Consensus 152 ilA~G~dp~ 160 (404)
+.++|+..+
T Consensus 104 l~~lgi~~d 112 (536)
T 4dlp_A 104 AEVLNSSND 112 (536)
T ss_dssp HHHTTCCCS
T ss_pred HHHcCCCCC
Confidence 778898876
No 59
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=82.43 E-value=0.45 Score=49.56 Aligned_cols=75 Identities=13% Similarity=0.274 Sum_probs=42.6
Q ss_pred CceEEEEe-cCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE-ccCcccc-c-c----cCCCHHHH-HHHHHHHHH
Q 015582 84 EKFYLYTG-RGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ-LTDDEKC-M-W----KNLSVEES-QRLARENAK 150 (404)
Q Consensus 84 ~~~~iytG-~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~-I~D~~a~-~-~----~~~~~e~i-~~~~~~~~~ 150 (404)
+++++.++ --||| .+||||+...+ +.++++. .|..|... -.|.++. + . ...+++++ .++.....+
T Consensus 18 ~~~~v~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~-~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 95 (560)
T 3h99_A 18 KKILVTCASPYANG-SIHLGHMLEHIQADVWVRYQRM-RGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQT 95 (560)
T ss_dssp CEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCCCC-CcchhhHHHHHHHHHHHHHHHH-cCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 34555444 33447 79999988764 3344444 46666554 3444432 1 1 13565554 344455666
Q ss_pred HHHHcCCCCC
Q 015582 151 DIIACGFDVT 160 (404)
Q Consensus 151 ~ilA~G~dp~ 160 (404)
++.++|++.+
T Consensus 96 ~~~~lgi~~d 105 (560)
T 3h99_A 96 DFAGFNISYD 105 (560)
T ss_dssp HHHHTTCCCS
T ss_pred HHHHcCCCCC
Confidence 7778999876
No 60
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=82.10 E-value=0.34 Score=49.96 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=40.6
Q ss_pred CceEEEEec-CCCCCCcchhchHHHh---hHHHHHhhCCCeEEEEcc-Ccccc-cc-----cCCCHHHH-HHHHHHHHHH
Q 015582 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKC-MW-----KNLSVEES-QRLARENAKD 151 (404)
Q Consensus 84 ~~~~iytG~-~PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~-D~~a~-~~-----~~~~~e~i-~~~~~~~~~~ 151 (404)
+.+++.|.+ =|+| .+||||+...+ .+.++++..|..|..+.+ |.++. +. ...++.++ .++..+..++
T Consensus 12 ~~~~i~t~~P~~ng-~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 90 (524)
T 2x1l_A 12 EPFYITTAIAYPNG-VPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRL 90 (524)
T ss_dssp CEEEEEECCBCCSS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCC-CcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 344444543 3466 89999988764 222333445666655432 32221 11 12455443 3444556667
Q ss_pred HHHcCCCCC
Q 015582 152 IIACGFDVT 160 (404)
Q Consensus 152 ilA~G~dp~ 160 (404)
+.++|+.++
T Consensus 91 ~~~lgi~~d 99 (524)
T 2x1l_A 91 QEKLNISFD 99 (524)
T ss_dssp HHHTTCCCS
T ss_pred HHHcCCcCC
Confidence 778888765
No 61
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=81.65 E-value=0.42 Score=50.76 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=39.9
Q ss_pred cccccccCchhHHHHHHHHHhHhCCCC-ccee-e--cccccCCCCCCCCCCCCCC--CCeeeecCC
Q 015582 238 CLIPCAIDQDPYFRMTRDVAPRIGYHK-PALI-E--SSFFPALQGETGKMSASDP--NSAIYVTDS 297 (404)
Q Consensus 238 ~~vp~G~DQd~~~~l~rdla~r~~~~k-p~~l-~--~~~lp~L~G~~~KMSkS~~--nsaI~L~D~ 297 (404)
++--.|.+|+.|+.-...++..+|++. +..+ | +.++. +. ++|||||.+ | .|.|.|=
T Consensus 379 ~IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~-~~--~~KMSkr~G~~n-~v~l~dL 440 (629)
T 2zue_A 379 VINVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVE-RP--EGKFSGRKGTWV-GFTVDEV 440 (629)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEE-BT--TBCCCTTTTTTT-TCBHHHH
T ss_pred EEEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEE-cC--CCcccCCCCCCC-eeeHHHH
Confidence 344679999999988889999999854 2212 2 23443 33 489999999 8 8888763
No 62
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=81.59 E-value=2.8 Score=45.07 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=46.0
Q ss_pred CceEEEEec-CCCCCCcchhchHH-Hh---hHHHHHhhCCCeEEEEccCc-ccc-cc----c-CCCHHHH-HHHHHHHHH
Q 015582 84 EKFYLYTGR-GPSSEALHLGHLVP-FM---FTKYLQDAFKVPLVIQLTDD-EKC-MW----K-NLSVEES-QRLARENAK 150 (404)
Q Consensus 84 ~~~~iytG~-~PTg~~lHlGh~v~-~~---~~~~lQ~~~~~~v~I~I~D~-~a~-~~----~-~~~~e~i-~~~~~~~~~ 150 (404)
++++|.+++ =|+| .+||||+.. .+ ++.++++.-|..|..+.|.+ |+. +. + ..++.++ .++......
T Consensus 2 ~~~~itt~~Py~nG-~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 2 VRYMVTSALPYANG-PIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CEEEEEECCCBTTS-CCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCC-chhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 467788877 4566 899999987 33 33445555577776655443 332 11 1 3565553 444455556
Q ss_pred HHHHcCCCCC
Q 015582 151 DIIACGFDVT 160 (404)
Q Consensus 151 ~ilA~G~dp~ 160 (404)
++.++|++.+
T Consensus 81 ~~~~lgis~D 90 (722)
T 1rqg_A 81 TFQRAKISFD 90 (722)
T ss_dssp HHHHHTCCCS
T ss_pred HHHHhCCCCC
Confidence 6778888765
No 63
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=80.98 E-value=3.4 Score=42.79 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=31.9
Q ss_pred ccccccCchhHHHH-HHHHHhHhCCCCcceee-cccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRM-TRDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l-~rdla~r~~~~kp~~l~-~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+-.+|.||..+.-+ ---+...+|++.|..+. +.++.. . |+|||||.+| .|++.|
T Consensus 303 ~~~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~-~--G~KMSKS~GN-vv~p~d 358 (560)
T 3h99_A 303 YHFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTV-N--GAKMSKSRGT-FIKAST 358 (560)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEE-T--TEECCTTTTC-CCBHHH
T ss_pred EEEeccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEe-C--CeeccccCCC-cCCHHH
Confidence 33579998873211 11223336666664433 445443 5 4899999998 777654
No 64
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=80.63 E-value=0.28 Score=49.93 Aligned_cols=33 Identities=6% Similarity=-0.056 Sum_probs=18.5
Q ss_pred chhhhhcCCCCCCCCccccCCC--CcccccccccCchhHH
Q 015582 213 EMIYKAVPSFPSSFPHLFSGKD--HLRCLIPCAIDQDPYF 250 (404)
Q Consensus 213 ~~~~~aa~~~~~~~~Di~~~~~--~~~~~vp~G~DQd~~~ 250 (404)
.+.||+.++. ||+.+.. ..||+||+|+|||||.
T Consensus 213 ef~YPlLQAa-----Dil~~~~d~~~~~~vp~~~d~~~~~ 247 (451)
T 3foc_A 213 YAAFPPKQML-----PVYSTYFDGLPFTRVPLPVGTGNED 247 (451)
T ss_dssp HHTCHHHHHG-----GGSGGGGTTSGGGCCBCC-------
T ss_pred HHhhHHHHHH-----HHHHhhcCCCCccccccccccccch
Confidence 3667777666 8874432 3689999999999994
No 65
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=80.33 E-value=0.98 Score=50.03 Aligned_cols=53 Identities=32% Similarity=0.367 Sum_probs=31.9
Q ss_pred ccccccCchh-HHH--HHHHHHhHhCCCCc-c-eeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDP-YFR--MTRDVAPRIGYHKP-A-LIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~-~~~--l~rdla~r~~~~kp-~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||.. |+. +...++ -.|. .| . .+.+.++...+| .|||||.+| .|.+.|
T Consensus 551 l~~~G~D~~r~wf~~~l~~s~~-~~g~-~Pfk~v~~hG~V~d~~G--~KMSKSlGN-vV~P~d 608 (917)
T 1ffy_A 551 MYLEGSDQYRGWFNSSITTSVA-TRGV-SPYKFLLSHGFVMDGEG--KKMSKSLGN-VIVPDQ 608 (917)
T ss_dssp EEEEEGGGGTTHHHHHHHHHHH-HHSS-CSBSEEEEECCEECTTS--CCCCSSSSC-CCCHHH
T ss_pred EEEEEecccccHHHHHHHHHHH-hhCC-CcccceeEeeeEEcCCC--cCcccccCC-cCChHH
Confidence 5578999873 432 234443 2343 34 2 334567665565 899999998 776543
No 66
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=79.96 E-value=0.65 Score=46.55 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=40.9
Q ss_pred EEEEecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE-ccCccc--ccc----cCCCHHHH-HHHHHHHHHHHHH
Q 015582 87 YLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ-LTDDEK--CMW----KNLSVEES-QRLARENAKDIIA 154 (404)
Q Consensus 87 ~iytG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~-I~D~~a--~~~----~~~~~e~i-~~~~~~~~~~ilA 154 (404)
...||-=|.| .+||||+...+ +.++++. .|..|..+ -.|++. ... ...++.++ .++.....+++.+
T Consensus 42 ~y~~gPt~yg-~~HiGHar~~v~~DvlaR~lr~-~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~ 119 (414)
T 3c8z_A 42 MYVCGITPYD-ATHLGHAATYLTFDLVHRLWLD-AGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAA 119 (414)
T ss_dssp EEECCCCTTS-CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCcCCC-CcCccccHHHHHHHHHHHHHHH-cCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3455555667 89999987754 3444554 46655443 333333 111 13555544 4444566677788
Q ss_pred cCCC-CC
Q 015582 155 CGFD-VT 160 (404)
Q Consensus 155 ~G~d-p~ 160 (404)
+|+. ++
T Consensus 120 Lgi~~~d 126 (414)
T 3c8z_A 120 LRVLPPH 126 (414)
T ss_dssp TTCCCCS
T ss_pred cCCCCCc
Confidence 9997 54
No 67
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=79.21 E-value=3.3 Score=42.16 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=33.2
Q ss_pred ccccccCchhH-HHHHHHHHhHhCCCCcc-eeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPY-FRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~-~~l~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+..+|.||..+ ..+-......+|.+.|. .+++.++.. + |+|||||.+| .|.+.|
T Consensus 253 i~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~--G~KMSKS~GN-~i~~~d 308 (497)
T 2csx_A 253 LHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-E--GKKMSKTLGN-VVDPYE 308 (497)
T ss_dssp CEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-S--SSBCCTTTTC-CCCHHH
T ss_pred EEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-C--CceeCCcCCC-CCCHHH
Confidence 56789998772 22211222345765554 345556554 5 4899999998 887654
No 68
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=78.77 E-value=3.9 Score=41.55 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=41.1
Q ss_pred EEEEecCC--CCCCcchhchHHHh---hHHHHHhhCCCeEEEEcc-Ccccc-cc-----cCCCHHHH-HHHHHHHHHHHH
Q 015582 87 YLYTGRGP--SSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKC-MW-----KNLSVEES-QRLARENAKDII 153 (404)
Q Consensus 87 ~iytG~~P--Tg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~-D~~a~-~~-----~~~~~e~i-~~~~~~~~~~il 153 (404)
++.||--| +| .+||||+...+ .+.++++..|..|..+.+ |.++. +. ...++.++ .++.....+++.
T Consensus 5 ~~i~~p~py~~g-~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 5 FYVTTPIYYVNA-EPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEECCCEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCC-CcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45566656 67 89999988764 222333445666655433 22221 10 13455443 334456667778
Q ss_pred HcCCCCC
Q 015582 154 ACGFDVT 160 (404)
Q Consensus 154 A~G~dp~ 160 (404)
++|++++
T Consensus 84 ~lgi~~d 90 (500)
T 2d5b_A 84 LLGIAYD 90 (500)
T ss_dssp HTTCCCS
T ss_pred HhCCcCC
Confidence 8999876
No 69
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=78.39 E-value=8 Score=42.57 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=52.6
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceEEEEec-CCCCCCcchhchHHHh---hHHHHHhhCCCeEEEEcc-Ccccc-cc
Q 015582 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKC-MW 133 (404)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~-~PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~-D~~a~-~~ 133 (404)
.+...|+|....+ ..++++++++++ =||| .+||||..... .+.++++.-|..|....| |.++. +.
T Consensus 37 ~W~~~~~f~~~~~--------~~~~~~~v~~~~PypnG-~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie 107 (880)
T 4arc_A 37 HWDEKRTFEVTED--------ESKEKYYCLSMLPYPSG-RLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAE 107 (880)
T ss_dssp HHHHTTTTCCCCC--------TTSCEEEEEECCCCCCS-SCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHH
T ss_pred HHHhcCCcccCCc--------CCCCCEEEEcCCCCCCC-CcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHH
Confidence 4556677765543 134678888886 4566 89999988764 233344445766655543 33332 11
Q ss_pred -----cCCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 015582 134 -----KNLSVEE-SQRLARENAKDIIACGFDVT 160 (404)
Q Consensus 134 -----~~~~~e~-i~~~~~~~~~~ilA~G~dp~ 160 (404)
...+..+ ..++.....+++.++|+..+
T Consensus 108 ~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~D 140 (880)
T 4arc_A 108 GAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYD 140 (880)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 1344433 33344455566777887654
No 70
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=78.20 E-value=4.2 Score=41.45 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=43.7
Q ss_pred EEEEecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCcc-ccccc----CCCHHHH-HHHHHHHHHHHHH
Q 015582 87 YLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAKDIIA 154 (404)
Q Consensus 87 ~iytG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i-~~~~~~~~~~ilA 154 (404)
..+||-=|.+ .+||||+.+.+ +.+|++. .|..|..+ ++|.. +...+ ..++.++ .++..+..+++.+
T Consensus 28 ~YvcGPtvy~-~~HIGHaR~~v~~Dvl~R~lr~-~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~ 105 (462)
T 3tqo_A 28 LYVCGMTVYD-YMHIGHGRSWIIFDMVVRYLRM-RGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKA 105 (462)
T ss_dssp EEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCcCCC-CCchhhhHHHHHHHHHHHHHHH-cCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3446777776 89999987764 3445554 46665544 45433 22211 3555554 4555677778888
Q ss_pred cCCCCC
Q 015582 155 CGFDVT 160 (404)
Q Consensus 155 ~G~dp~ 160 (404)
+|+.++
T Consensus 106 LgI~~d 111 (462)
T 3tqo_A 106 LRVLSP 111 (462)
T ss_dssp HTCCCC
T ss_pred cCCCCC
Confidence 999764
No 71
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=77.59 E-value=0.81 Score=46.64 Aligned_cols=72 Identities=24% Similarity=0.218 Sum_probs=41.7
Q ss_pred eEEE-EecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCccc-ccc----cCCCHHHHH-HHHHHHHHHH
Q 015582 86 FYLY-TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDEK-CMW----KNLSVEESQ-RLARENAKDI 152 (404)
Q Consensus 86 ~~iy-tG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~~a-~~~----~~~~~e~i~-~~~~~~~~~i 152 (404)
+.+| ||-=|.+ .+||||+-+.+ +.++++.. |..|..+ ++|.-. ... ...++.++. ++..+..+++
T Consensus 23 v~~yv~gPt~y~-~~HiGHar~~v~~D~l~R~lr~~-G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~ 100 (461)
T 1li5_A 23 VGMYVCGITVYD-LCHIGHGRTFVAFDVVARYLRFL-GYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDF 100 (461)
T ss_dssp EEEEECCCBSSS-CCBHHHHHHHHHHHHHHHHHHHH-TCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred eeEEEcCCcCCC-CCcccccHHHHHHHHHHHHHHHc-CCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3444 4444447 89999987654 34455544 5555444 666542 211 135665544 4445666777
Q ss_pred HHcCCCC
Q 015582 153 IACGFDV 159 (404)
Q Consensus 153 lA~G~dp 159 (404)
-++|+.+
T Consensus 101 ~~LgI~~ 107 (461)
T 1li5_A 101 DALNILR 107 (461)
T ss_dssp HHTTCCC
T ss_pred HHcCCCC
Confidence 7899975
No 72
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=77.39 E-value=7.6 Score=39.93 Aligned_cols=52 Identities=19% Similarity=0.095 Sum_probs=22.0
Q ss_pred ccccccCchhHH---HHHHHHHhHhCCCCccee-ecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYF---RMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~---~l~rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||..+. -.++-.+ +|.+.|..+ .+.++. +.| +|||||.+| .|++.|
T Consensus 279 v~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~~G--~KMSKS~GN-vi~p~d 334 (536)
T 4dlp_A 279 AHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-NRG--EKMSKSVGN-VIDPFE 334 (536)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C---------------CCHHH
T ss_pred eEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-eCC--ceecccCCC-CCCHHH
Confidence 567899998842 1133233 466555433 356664 454 899999998 887654
No 73
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=76.37 E-value=6.3 Score=40.96 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=42.8
Q ss_pred CCceEEEEec-CCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE-ccCcccc-c-c----cCCCHHHHH-HHHHHHH
Q 015582 83 GEKFYLYTGR-GPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ-LTDDEKC-M-W----KNLSVEESQ-RLARENA 149 (404)
Q Consensus 83 ~~~~~iytG~-~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~-I~D~~a~-~-~----~~~~~e~i~-~~~~~~~ 149 (404)
+++++|-+.. -||| .+||||+...+ +.++++.. |..|..+ =.|.+.. + . ...+++++. ++.....
T Consensus 25 ~~~~~i~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~~-G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~ 102 (564)
T 3kfl_A 25 QKVFFATTPIYYVNA-SPHIGHVYSTLIVDVLGRYHRVK-GEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFK 102 (564)
T ss_dssp CCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHc-CCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455544432 3667 89999987754 34444444 5555443 3454542 1 1 135665543 4444555
Q ss_pred HHHHHcCCCCC
Q 015582 150 KDIIACGFDVT 160 (404)
Q Consensus 150 ~~ilA~G~dp~ 160 (404)
+++.++|+..+
T Consensus 103 ~~~~~lgi~~D 113 (564)
T 3kfl_A 103 QCFQEMNYDMN 113 (564)
T ss_dssp HHHHHTTCCCS
T ss_pred HHHHHcCCCCC
Confidence 66778999876
No 74
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=76.01 E-value=1.4 Score=48.46 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=32.6
Q ss_pred ccccccCchhHHHHHHHHHhH---hCCCCc--ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRMTRDVAPR---IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r---~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||..+. .+|-++.- .|. .| ..+.+.++...+| .|||||.+| .|...|
T Consensus 484 ~~v~G~Dii~~W-~a~~~~~~~~~~g~-~Pfk~v~~hG~vld~~G--~KMSKSlGN-vIdP~d 541 (862)
T 1gax_A 484 VLVTGYDILFLW-VSRMEVSGYHFMGE-RPFKTVLLHGLVLDEKG--QKMSKSKGN-VIDPLE 541 (862)
T ss_dssp CEEEEGGGTTTT-HHHHHHHHHHHSSS-CSBSEEEEECCEECTTS--CBCCTTTTC-CCCHHH
T ss_pred EEecCccccccH-HHHHHHHHHHhcCC-CcccEEEEeeeEEcCCC--CCccccCCC-CCCHHH
Confidence 456899986532 33434332 232 35 2344667777675 899999998 776544
No 75
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=71.76 E-value=8.6 Score=39.53 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=40.0
Q ss_pred EecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCc-----------cccccc----CCCHHH-HHHHHHH
Q 015582 90 TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDD-----------EKCMWK----NLSVEE-SQRLARE 147 (404)
Q Consensus 90 tG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~-----------~a~~~~----~~~~e~-i~~~~~~ 147 (404)
||-=|.+ .+||||..+.+ +.+|++- .|..|..+ |+|. .+...+ ..++.+ +.++...
T Consensus 48 cgPTvYg-~~HIGHar~~v~~Dvl~R~lr~-~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~ 125 (501)
T 3sp1_A 48 CGPTVYN-YAHIGNFRTYIFGDLLIKTLRF-LGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEA 125 (501)
T ss_dssp CCCBCSS-CCCHHHHHHHHHHHHHHHHHHH-HTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHH
T ss_pred CCCcCCC-CcchhhhHHHHHHHHHHHHHHH-cCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4544446 89999977753 3455554 35555544 5554 122221 255555 4555567
Q ss_pred HHHHHHHcCCCCCc
Q 015582 148 NAKDIIACGFDVTK 161 (404)
Q Consensus 148 ~~~~ilA~G~dp~k 161 (404)
..+++.++|+.++.
T Consensus 126 f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 126 FFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHTTCCCCS
T ss_pred HHHHHHHcCCCCCC
Confidence 77788889998754
No 76
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=70.20 E-value=2.5 Score=46.98 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=29.3
Q ss_pred ccccccCchh-HHHHHHHHHhH-hCC-CCc-ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~-~~~l~rdla~r-~~~-~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+...|.||-. |....+-...- ++. +-| ..+++.++.. + |+|||||.+| .|.+.|
T Consensus 606 i~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~--G~KMSKS~GN-vv~p~d 663 (967)
T 1wz2_A 606 WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-E--GQKMSKSKGN-VLNFID 663 (967)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-S--SSCCCTTTCC-CCBHHH
T ss_pred EEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-C--CEEccccccC-CCCHHH
Confidence 4568999854 32222222121 221 122 3344555554 5 4899999998 776544
No 77
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=68.65 E-value=8.4 Score=38.38 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=20.5
Q ss_pred ccccccCchh-HHHHHHHHHhHh-CCCCcc-ee-ecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDP-YFRMTRDVAPRI-GYHKPA-LI-ESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~-~~~l~rdla~r~-~~~kp~-~l-~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+..+|.|+-. |....+-...-+ |.+++. .+ ++.++. +.| +|||||.+| .|++.|
T Consensus 247 i~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G--~KMSKS~GN-~v~~~~ 304 (414)
T 3c8z_A 247 IQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDG--HKMSKSRGN-LVLVSQ 304 (414)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-----------------CBHHH
T ss_pred EEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCC--eEcccccCC-cCCHHH
Confidence 3467888765 554443333333 553333 23 334544 354 899999998 887643
No 78
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=68.08 E-value=12 Score=38.34 Aligned_cols=54 Identities=17% Similarity=0.125 Sum_probs=31.7
Q ss_pred ccccccCchhHHHH-HHHHHhHhCCCCcc-eeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDPYFRM-TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~~~~l-~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+..+|.||-.+.-+ -.-.+..+|.+.|. .+.+.++.. + |+|||||.+| .|.+.|
T Consensus 268 i~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~--G~KMSKS~GN-~v~p~d 323 (524)
T 2x1l_A 268 LHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-R--GEKMSKSIGN-VVDPVN 323 (524)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-C--SCSEETTTEE-SSCHHH
T ss_pred EEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-C--CcccCCcCCC-CCCHHH
Confidence 55789998853221 11223335665443 333455544 4 4899999998 887654
No 79
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=67.34 E-value=2.3 Score=46.29 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=29.4
Q ss_pred ccccccCchh-HHHHHHHHHhH-hCC-CCc-ceeecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd~-~~~l~rdla~r-~~~-~kp-~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+..+|.||-. |....+-...- ++. +-| ..+++.++.. + |+|||||.+| .|.+.|
T Consensus 606 i~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~--G~KMSKS~GN-vv~p~d 663 (810)
T 1wkb_A 606 WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-E--GQKMSKSKGN-VLNFID 663 (810)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-T--TBCCCTTTTC-CCBHHH
T ss_pred EEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-C--CeehhhcCCC-cCCHHH
Confidence 4568999864 43322222221 221 123 2344555543 4 4899999998 887654
No 80
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=65.79 E-value=2.1 Score=45.23 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=40.8
Q ss_pred ccccccCchhHHHHHHHHHhHhCCCCcc-eeecccccCCCCCCCCCCCCCCCCeeeecCCHHHH
Q 015582 239 LIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 301 (404)
Q Consensus 239 ~vp~G~DQd~~~~l~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~~~i 301 (404)
+--+|.+|+.|+.-...+++.+|++.+. ..|..+ |+- .||||+.+| .|.|.|=-+++
T Consensus 368 IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~f--g~v---~kMSkR~G~-~v~L~dLlde~ 425 (607)
T 1f7u_A 368 IYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNF--GMV---QGMSTRKGT-VVFLDNILEET 425 (607)
T ss_dssp EEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECC--CCE---ESCCGGGTC-CCBHHHHHHHH
T ss_pred EEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecc--ccc---ccccCCCCC-cccHHHHHHHH
Confidence 3358999999999888999999986553 334444 222 379999998 88887744333
No 81
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=65.04 E-value=9.9 Score=38.51 Aligned_cols=54 Identities=19% Similarity=0.028 Sum_probs=29.6
Q ss_pred ccccccCch-hHHHHHHHHHhH-hCCCCcce-eecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 239 LIPCAIDQD-PYFRMTRDVAPR-IGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 239 ~vp~G~DQd-~~~~l~rdla~r-~~~~kp~~-l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+..+|.|+. +|.....-...- +|.+.|.. +|+.++.. . |+|||||.+| .|.+.|
T Consensus 223 ih~gG~Dl~fpH~~~~~aq~~a~~g~~~~~~~~h~g~v~~-~--G~KMSKS~GN-~v~~~d 279 (461)
T 1li5_A 223 IHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMV-D--REKMSKSLGN-FFTVRD 279 (461)
T ss_dssp EEECBGGGTTTHHHHHHHHHHHHSSSCCEEEECCBCCEEE-T--TBCCCGGGTC-CCBHHH
T ss_pred EEeccCccCchHHHHHHHHHHHhcCCCCCcEEEEeeEEEE-C--CeEccccCCC-ccChhH
Confidence 345677754 443322111111 46544433 34455543 4 4899999998 887654
No 82
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=63.06 E-value=2 Score=43.85 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=16.3
Q ss_pred cccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 270 SSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 270 ~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+..+-..+| +|||||.+| .|.+.|
T Consensus 259 H~g~v~~~G--~KMSKSlGN-~i~~~d 282 (462)
T 3tqo_A 259 HAGLLEINK--EKMSKSLGN-IISIRE 282 (462)
T ss_dssp EECCEEETT--EECCTTTTC-CCBHHH
T ss_pred EccEEecCC--cCccccCCC-cccHHH
Confidence 333344565 899999998 676654
No 83
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=57.35 E-value=2.8 Score=45.06 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=20.0
Q ss_pred CCcce-eecccccCCCCCCCCCCCCCCCCeeeecC
Q 015582 263 HKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 296 (404)
Q Consensus 263 ~kp~~-l~~~~lp~L~G~~~KMSkS~~nsaI~L~D 296 (404)
+.|.. +++.++.. +| +|||||.+| .|+..|
T Consensus 327 ~~Pk~v~~hG~v~~-~G--~KMSKS~GN-vV~p~d 357 (722)
T 1rqg_A 327 NLPYDIPANEYLTL-EG--KKFSTSRNW-AIWVHE 357 (722)
T ss_dssp CCCSBCCEECCEEE-TT--EECBTTTTB-SCBHHH
T ss_pred CCCCEEEEeeeEEe-CC--eeeeeeCCC-cCCHHH
Confidence 44533 34556554 54 899999998 888654
No 84
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=54.09 E-value=20 Score=39.36 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=46.9
Q ss_pred hHHhcCcccccC-CHHHHHHHHHhCCceEEEEec-CCCCCCcchhchHHHh----hHHHHHhhCCCeEEEEcc-Ccccc-
Q 015582 60 VFLRRGVFFAHR-DLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLT-DDEKC- 131 (404)
Q Consensus 60 ~l~~Rgi~~~~~-d~~~ll~~~~~~~~~~iytG~-~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~I~-D~~a~- 131 (404)
.+...|+|.... + ..++++++++|+ =|+| .+||||..... +.+|+ +.-|..|....| |.++.
T Consensus 16 ~W~~~~~f~~~~~~--------~~~~k~~v~~~~Py~nG-~lHiGHa~~~~~~Dvl~Ry~-rm~G~~V~~~~G~D~~Glp 85 (878)
T 2v0c_A 16 FWEEKGFMKAKDLP--------GGRGKQYVLVMFPYPSG-DLHMGHLKNYTMGDVLARFR-RMQGYEVLHPMGWDAFGLP 85 (878)
T ss_dssp HHHHHTTTCCCSCC--------C---EEEEEECCCCCSS-CCBHHHHHHHHHHHHHHHHH-HHHTCEEECCCCBCCSSHH
T ss_pred HHHHcCCcccCccc--------CCCCCEEEECCCCCCCC-CcchhhhHHHHHHHHHHHHH-HhcCCceEeecccCcccHH
Confidence 344566665543 2 123568888884 3345 89999988754 33443 334666655433 33332
Q ss_pred cc-----cCCCHHH-HHHHHHHHHHHHHHcCCCC
Q 015582 132 MW-----KNLSVEE-SQRLARENAKDIIACGFDV 159 (404)
Q Consensus 132 ~~-----~~~~~e~-i~~~~~~~~~~ilA~G~dp 159 (404)
+. ...+..+ +.++.....+++.++|+..
T Consensus 86 ie~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~ 119 (878)
T 2v0c_A 86 AENAALKFGVHPKDWTYANIRQAKESLRLMGILY 119 (878)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 11 1244433 3444445556666777644
No 85
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=53.95 E-value=3.4 Score=45.46 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=12.0
Q ss_pred CCCCCCCCCCeeeecC
Q 015582 281 GKMSASDPNSAIYVTD 296 (404)
Q Consensus 281 ~KMSkS~~nsaI~L~D 296 (404)
.|||||.+| .|...|
T Consensus 636 ~KMSKSkGN-vVdP~d 650 (878)
T 2v0c_A 636 AVMSKSKGN-GVMVGP 650 (878)
T ss_dssp EECSGGGTC-CCBHHH
T ss_pred HHhhccCCC-cccHHH
Confidence 799999998 776543
No 86
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=51.58 E-value=16 Score=40.28 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=27.3
Q ss_pred CCceEEEEec-CCCCCCcchhchHHHh---hHHHHHhhCCCeEEEEcc
Q 015582 83 GEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (404)
Q Consensus 83 ~~~~~iytG~-~PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~ 126 (404)
+++|++.+|. =||| .+||||.+... ++.++++.-|..+....|
T Consensus 47 ~~~f~i~~~pPY~nG-~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~G 93 (917)
T 1ffy_A 47 NETFILHDGPPYANG-NLHMGHALNKILKDFIVRYKTMQGFYAPYVPG 93 (917)
T ss_dssp SCBCCEECCCCBSSS-CCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCE
T ss_pred CCceeeCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 4578888887 4577 89999988753 233345544555544433
No 87
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=47.65 E-value=8.1 Score=42.02 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=29.8
Q ss_pred hCCceEEEEec-CCCCCCcchhchHHHh---hHHHHHhhCCCeEEEEc-cCccc
Q 015582 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEK 130 (404)
Q Consensus 82 ~~~~~~iytG~-~PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I-~D~~a 130 (404)
.+++++++.|. =||| .|||||..... ++.++++.-|..|.... .|.|+
T Consensus 36 ~~~~f~i~~~pPy~nG-~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~G 88 (821)
T 1ile_A 36 GGPRYTVYEGPPTANG-LPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHG 88 (821)
T ss_dssp TSCBCCBCCCCCCTTS-CCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCH
T ss_pred CCCcEEEecCCCCCCC-CCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCC
Confidence 44678888888 6777 89999988753 22334444455544433 34444
No 88
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=47.53 E-value=5.2 Score=41.15 Aligned_cols=52 Identities=21% Similarity=0.091 Sum_probs=18.4
Q ss_pred cccccCch-hHHHHHHHHHhHhCCCCc--ceeecccccCCCCCCCCCCCCCCCCeeeec
Q 015582 240 IPCAIDQD-PYFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 295 (404)
Q Consensus 240 vp~G~DQd-~~~~l~rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~ 295 (404)
-.+|.|.. ||.+.-+-...-+..+++ ..+|+.++. +.| +|||||.+| .|.+.
T Consensus 257 H~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~-~~G--~KMSKSlGN-~it~~ 311 (501)
T 3sp1_A 257 HLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLI-MDY--NKMSKSRGN-FITVK 311 (501)
T ss_dssp EEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEE-CC-------------CCCHH
T ss_pred EeeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEe-eCC--eEccccCCC-cCCHH
Confidence 34677743 454433333333322222 233445554 454 899999998 66653
No 89
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=47.21 E-value=1.4e+02 Score=27.83 Aligned_cols=93 Identities=15% Similarity=0.204 Sum_probs=60.7
Q ss_pred HhCCceEEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCcccc-cc--cCCCHHHHHHHHH--------HHH
Q 015582 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC-MW--KNLSVEESQRLAR--------ENA 149 (404)
Q Consensus 81 ~~~~~~~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a~-~~--~~~~~e~i~~~~~--------~~~ 149 (404)
++|+ .++.|+-|-. +-|=+-++-- ++.|.+..|+ .|.|+++|-+.. +- ...+..+.++.++ .+.
T Consensus 27 ~~g~--HallGISpgN-syFs~d~L~~-Li~Wa~~~F~-~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ 101 (257)
T 3oqi_A 27 KRRR--HVLVGISPFN-SRFSEDYIHR-LIAWAVREFQ-SVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAE 101 (257)
T ss_dssp HHTC--EEEEEECTTS-TTCCHHHHHH-HHHHHHHHCS-EEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC--eEEEEeCCCC-cccCHHHHHH-HHHHHHccCC-ceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 4555 5899999986 7888888877 4899988766 567778997642 21 3466666555442 233
Q ss_pred HHHHHcCCCCCceEEEeCCccCccchHHHHH
Q 015582 150 KDIIACGFDVTKTFIFSDFDYVGGAFYKNMV 180 (404)
Q Consensus 150 ~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~ 180 (404)
..+.++|.+.+ -|..=|++..+..|.++.
T Consensus 102 ral~~~g~~~~--~v~~~Sd~~~~~~Y~~l~ 130 (257)
T 3oqi_A 102 KALEAHGGNPE--DIHTFSDFANQTAYRNLR 130 (257)
T ss_dssp HHHHHHTCCTT--CEEETTTTTTCHHHHHHH
T ss_pred HHHHHcCCCcc--cceeHHHhhcCHHHHHHH
Confidence 34456788877 455446676666666544
No 90
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=46.64 E-value=12 Score=39.22 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=27.6
Q ss_pred eEEEEecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCc
Q 015582 86 FYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDD 128 (404)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~ 128 (404)
+.-|+|--|++ .|||||+-..+ +.++|+ ..|..|... |+|+
T Consensus 106 ~ve~~spn~~~-~~HiGH~R~~iigD~laR~l~-~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNK-ELHVGHLRNIALGDAIARILA-YAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTS-CCBHHHHHHHHHHHHHHHHHH-HTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCC-CCcchHHHHHHHHHHHHHHHH-HcCCceEEEeccCCc
Confidence 34467888887 79999988754 334444 456666554 7887
No 91
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=44.30 E-value=12 Score=41.13 Aligned_cols=14 Identities=43% Similarity=0.285 Sum_probs=11.1
Q ss_pred CCCCCCCCCeeeecC
Q 015582 282 KMSASDPNSAIYVTD 296 (404)
Q Consensus 282 KMSkS~~nsaI~L~D 296 (404)
|||||.+| .|...|
T Consensus 639 KMSKSkGN-vVdP~d 652 (880)
T 4arc_A 639 KMSKSKNN-GIDPQV 652 (880)
T ss_dssp ECCTTTTC-CCCHHH
T ss_pred cccCcCCC-CCCHHH
Confidence 99999999 665543
No 92
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=44.20 E-value=16 Score=38.30 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=26.3
Q ss_pred EEecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCc
Q 015582 89 YTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDD 128 (404)
Q Consensus 89 ytG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~ 128 (404)
|+|-=|++ .|||||+-..+ +.++|.- .|..|.-. |+||
T Consensus 149 ~~spN~~~-plHvGHlRs~iiGD~laRil~~-~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAK-PFHAGHLRSTIIGGFLANLYEK-LGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTS-CCBGGGHHHHHHHHHHHHHHHH-TTCEEEEEEEEBCC
T ss_pred ecCCCCCC-CCccchHHHHHHHHHHHHHHHH-cCCCeeEEEeecCc
Confidence 67888887 79999988764 3444544 46666544 8884
No 93
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=43.28 E-value=2.1e+02 Score=26.78 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhHhCCCCcceeecccccCCCCCCCCCCCCCCCCeeeecCCH
Q 015582 247 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 298 (404)
Q Consensus 247 d~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSkS~~nsaI~L~D~~ 298 (404)
.|-+.+.+.+++.+|++ ...+-.+.+..-+ |..||++ .+||++..
T Consensus 151 ~qq~~~l~~~~~dl~~~-v~iv~vp~vr~~d--GlaiSSr----n~yLs~~e 195 (280)
T 2ejc_A 151 AQQFRVLRRMVRDLNMD-VEMIECPIVREPD--GLAMSSR----NVYLSPEE 195 (280)
T ss_dssp HHHHHHHHHHHHHTTCC-CEEEEECCCBCTT--SCBCCGG----GGGCCHHH
T ss_pred CcCHHHHHHHHHHcCCe-EEEEeeCcEEcCC--CCEeccC----cccCCHHH
Confidence 67778889999999984 2222244444334 4799987 68887633
No 94
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=42.70 E-value=19 Score=39.40 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=37.4
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceEEEEec-CCCCCCcchhchHHHh---hHHHHHhhCCCeEEEEccCcc
Q 015582 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (404)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~-~PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (404)
.... |+|....+ ..++++++++|. =||| .||+||..... ++.++++.-|..|....|=++
T Consensus 19 ~W~~-~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~ 82 (862)
T 1gax_A 19 KWAK-NPFVANPK--------SGKPPFVIFMPPPNVTG-SLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82 (862)
T ss_dssp HHHH-SCCCCCTT--------CCSCEEEEECCCCBSSS-CCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBC
T ss_pred HHHh-CCCccCcC--------CCCCcEEEEcCCCCCCC-CcchhhhHHHHHHHHHHHHHHhCCCccccccccCC
Confidence 4556 77765432 234678888874 4566 89999988753 333455555777766655444
No 95
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=40.88 E-value=18 Score=38.14 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=26.9
Q ss_pred EEecCCCCCCcchhchHHHh----hHHHHHhhCCCeEEEE--ccCc
Q 015582 89 YTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDD 128 (404)
Q Consensus 89 ytG~~PTg~~lHlGh~v~~~----~~~~lQ~~~~~~v~I~--I~D~ 128 (404)
|+|-=|++ .|||||+-..+ +.++|.- .|..|... |+|+
T Consensus 125 ~~spN~~~-~~HiGH~Rs~iigD~laR~l~~-~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 125 HTSVNPTK-PLHMGHARNAILGDVMARILRF-LGYEVEVQNYIDDL 168 (629)
T ss_dssp CCCCCTTS-CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEEEECTT
T ss_pred eeCCCCCC-CCccchhHHHHHHHHHHHHHHH-cCCCceEEecccch
Confidence 78888887 79999987754 3444544 46666554 8887
No 96
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=33.47 E-value=33 Score=34.73 Aligned_cols=47 Identities=23% Similarity=0.413 Sum_probs=29.6
Q ss_pred CCceE-EEEecCCCCCCcchhchHHHhh---HHHHHhhCCCeEEEE--ccCccc
Q 015582 83 GEKFY-LYTGRGPSSEALHLGHLVPFMF---TKYLQDAFKVPLVIQ--LTDDEK 130 (404)
Q Consensus 83 ~~~~~-iytG~~PTg~~lHlGh~v~~~~---~~~lQ~~~~~~v~I~--I~D~~a 130 (404)
++++. =|+.--||| .||+||+-...+ +..+.+..|..|.=. |+||=.
T Consensus 29 ~~~v~vE~ss~n~~~-~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~ 81 (464)
T 3fnr_A 29 QESFLLEYVSANPTG-PLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGN 81 (464)
T ss_dssp SCEEEEECCCCCSSS-SCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHH
T ss_pred CCEEEEEeCCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccH
Confidence 34433 367888998 799999877642 333444456665443 788754
No 97
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=21.94 E-value=35 Score=36.87 Aligned_cols=58 Identities=19% Similarity=0.258 Sum_probs=31.4
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceEEEEecC-CCCCCcchhchHHHh---hHHHHHhhCCCeEEEE
Q 015582 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ 124 (404)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~-PTg~~lHlGh~v~~~---~~~~lQ~~~~~~v~I~ 124 (404)
...+.++|....+- -+.++++++.+|.= ||| .|||||..... .+.++++.-|..|...
T Consensus 16 ~W~~~~~f~~~~~~------~~~~~~~~i~~~~Py~nG-~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~ 77 (810)
T 1wkb_A 16 RWLEAKIFEPNIRD------KPKEKKFYITVAFPYLSG-HLHVGHARTYTIPDVIARFKRMQGYNVLFP 77 (810)
T ss_dssp HHHHTTTTCCCGGG------SCGGGEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHHHTCEEECC
T ss_pred HHHhCCCcccCchh------cCCCCcEEEEeCCCCCCC-CCccccchhHHHHHHHHHHHHcCCCccCcC
Confidence 44456666544320 01234566666652 356 89999988754 2223344446666554
No 98
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=20.94 E-value=2.2e+02 Score=26.35 Aligned_cols=98 Identities=10% Similarity=0.106 Sum_probs=63.5
Q ss_pred EEEEecCCCCCCcchhchHHHhhHHHHHhhCCCeEEEEccCccc-ccc--cCCCHHHHHHHHH--------HHHHHHHHc
Q 015582 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK-CMW--KNLSVEESQRLAR--------ENAKDIIAC 155 (404)
Q Consensus 87 ~iytG~~PTg~~lHlGh~v~~~~~~~lQ~~~~~~v~I~I~D~~a-~~~--~~~~~e~i~~~~~--------~~~~~ilA~ 155 (404)
.++.|+-|-. +-|=+-.+-. ++.|.+..|+ .+.|+++|-+. .+- ...+..+.++.++ .+...+.++
T Consensus 31 HallGVSpgN-syFs~drl~~-li~Wa~~~F~-~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~~~ 107 (247)
T 3oqv_A 31 HALIGISAGN-SYFSQKNTVM-LLQWAGQRFE-RTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLESV 107 (247)
T ss_dssp EEEEEEESSC-TTCCHHHHHH-HHHHHHHHEE-EEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCC-cccCHHHHHH-HHHHHHccCC-ceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999986 7888888877 4889988765 46677899864 221 1466655554442 333445567
Q ss_pred CCCCCceEEEeCCccCccchHHHHHH-HHhhcC
Q 015582 156 GFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVT 187 (404)
Q Consensus 156 G~dp~kt~i~~~s~~~~~~~~~~~~~-l~~~~t 187 (404)
|.+.+..-|..=|++..+..|.++.. +.+.+.
T Consensus 108 ~~~~~~~rv~~~Sd~~~~~~Y~~l~~~ve~a~~ 140 (247)
T 3oqv_A 108 GDHAERFRVRSLSELQETPEYRAVRERTDRAFE 140 (247)
T ss_dssp CTTGGGEEEEEHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CCCccCceeeeHHHhhCCHHHHHHHHHHHHHHh
Confidence 88887766665567766666666543 444433
No 99
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=20.51 E-value=1.6e+02 Score=20.18 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhHHHHHHH
Q 015582 365 QRLAKVLTELVERHQVARAAVTDEMVDAF 393 (404)
Q Consensus 365 ~~La~~i~~~l~~~r~~~~~~~~~~~~~~ 393 (404)
..|+..|..+|...|.+++..++..+.+.
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~ri 33 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRI 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999998755544
Done!