RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 015582
(404 letters)
>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase.
Length = 383
Score = 793 bits (2050), Expect = 0.0
Identities = 333/388 (85%), Positives = 359/388 (92%), Gaps = 7/388 (1%)
Query: 15 QVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72
QVV+PWEVS+ GKIDYDKL+DKFGCQRLD SL+DRV+RLTGRP H FLRRGVFFAHRD
Sbjct: 1 QVVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRD 60
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
L +ILDAYEKGEKFYLYTGRGPSSEALHLGHL+PFMFTKYLQDAFKVPLVIQLTDDEK +
Sbjct: 61 LEEILDAYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFL 120
Query: 133 WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
WKNLSVEESQRLARENAKDIIACGFDV +TFIFSDFDYVGGAFYKNMVK+AKCVT N+V
Sbjct: 121 WKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVGGAFYKNMVKIAKCVTLNQVR 180
Query: 193 GIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRM 252
GIFGF+GED+IGK+SFP VQ A PSFPSSFPHLF GKD LRCLIPCAIDQDPYFRM
Sbjct: 181 GIFGFSGEDNIGKISFPAVQ-----AAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRM 235
Query: 253 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSG 312
TRDVAPR+GY+KPALIES FFPALQGE+GKMSASDPNSAIYVTD+ K IKNKINKYAFSG
Sbjct: 236 TRDVAPRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSG 295
Query: 313 GQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 372
GQ++VE HR+LGANLEVDIP KYL+FFLEDDAELE IKKEYG+G MLTGEVK+RL +VLT
Sbjct: 296 GQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLT 355
Query: 373 ELVERHQVARAAVTDEMVDAFMAVRPLP 400
E+VERHQ ARAAVTDEMVDAFMAVRPLP
Sbjct: 356 EIVERHQRARAAVTDEMVDAFMAVRPLP 383
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed.
Length = 368
Score = 346 bits (890), Expect = e-117
Identities = 144/388 (37%), Positives = 215/388 (55%), Gaps = 33/388 (8%)
Query: 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
E E +V+PWEVS G +DYDKL ++FG + + L + PH +RRG+ F HR
Sbjct: 1 EDEFMVTPWEVS--GIVDYDKLFEEFGIEPFTEVL-PELPE-----PHPLMRRGIIFGHR 52
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
D + IL+AY G+ F +YTG PS +H+GH + F K+ Q+ F + I + DDE
Sbjct: 53 DYDKILEAYRNGKPFAVYTGFMPSGP-MHIGHKMVFDELKWHQE-FGANVYIPIADDEAY 110
Query: 132 MWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNM-VKVAKCVTYNK 190
+ LS EE++ A E D+IA GFD KT I+ + ++ ++AK V +++
Sbjct: 111 AARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSEN---IKVYDLAFELAKKVNFSE 167
Query: 191 VVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 250
+ I+GFTGE +IG + +P Q A P L G L+P IDQDP+
Sbjct: 168 LKAIYGFTGETNIGHIFYPATQ-----AADIL---HPQLEEGP--KPTLVPVGIDQDPHI 217
Query: 251 RMTRDVAPRI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 306
R+TRD+A R+ G+ KP+ F P L G GKMS+S P SAIY+TD + +K KI
Sbjct: 218 RLTRDIAERLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKIM 275
Query: 307 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQ 365
K A +GG+ ++E RKLG + + + L + L EDD EL+ I +E +G +L GE K+
Sbjct: 276 K-ALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIYEECRSGELLCGECKK 334
Query: 366 RLAKVLTELVERHQVARAAVTDEMVDAF 393
A+ + E ++ HQ R E+++ +
Sbjct: 335 EAAEKIAEFLKEHQEKREEA-REILEKY 361
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 288 bits (738), Expect = 3e-95
Identities = 113/324 (34%), Positives = 165/324 (50%), Gaps = 34/324 (10%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+KF + TG PS +HLGH + + TK+LQ F V L I + D K ++ R
Sbjct: 1 KKFRVLTGIQPSG-KMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKQTD-PDALR 57
Query: 144 LAREN-AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDH 202
ARE A D +A G D KTFIF DY Y+ ++ VT+ ++ + F +
Sbjct: 58 KAREELAADYLAVGLDPEKTFIFLQSDY--PEHYELAWLLSCQVTFGELKRMTQFKDKSQ 115
Query: 203 -----IGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 257
IG +S+P +Q A L+P IDQD + +TRD+A
Sbjct: 116 AENVPIGLLSYPVLQ-----AADILLYQAD-----------LVPVGIDQDQHLELTRDLA 159
Query: 258 PRIG------YHKPALIESSFFPALQGETG-KMSASDPNSAIYVTDSAKAIKNKINKYAF 310
R + KP + S FFP L G +G KMS SDPNSAI++TD+ K IK KI K A
Sbjct: 160 ERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTDTPKQIKKKIRKAAT 219
Query: 311 SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKV 370
GG+ ++ HR+ + + +YLSFFL DD +L+ I + Y +G + GE K+ L +V
Sbjct: 220 DGGRVTLFEHREKPGVPNLLVIYQYLSFFLIDDDKLKEIYEAYKSGKLGYGECKKALIEV 279
Query: 371 LTELVERHQVARAAVTDEMVDAFM 394
L E ++ Q RA + +E++D +
Sbjct: 280 LQEFLKEIQERRAEIAEEILDKIL 303
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA
synthetase. Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. TrpRS is a homodimer which
attaches Tyr to the appropriate tRNA. TrpRS is a class I
tRNA synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains class I characteristic
HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 280
Score = 284 bits (728), Expect = 2e-94
Identities = 106/303 (34%), Positives = 147/303 (48%), Gaps = 38/303 (12%)
Query: 87 YLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLA 145
+ +G PS +LHLGH + F F +LQ+A L + D K L EE ++
Sbjct: 1 RVLSGIQPSG-SLHLGHYLGAFRFWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNT 58
Query: 146 RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT------G 199
RENAKD +ACG D K+ IF D Y+ ++ VT+ ++ + GF
Sbjct: 59 RENAKDYLACGLDPEKSTIFFQSDV--PEHYELAWLLSCVVTFGELERMTGFKDKSAQGE 116
Query: 200 EDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 259
+IG +++P +Q A CL+P IDQDP+ +TRD+A R
Sbjct: 117 SVNIGLLTYPVLQ-----AADILLYKA-----------CLVPVGIDQDPHLELTRDIARR 160
Query: 260 IGYH------KPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFS 311
KPA + S +F P LQG + KMS SDPN+AI++TDS K IK KI K A
Sbjct: 161 FNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMKAATD 220
Query: 312 GGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVL 371
GG+ HR+ G V V+ S F DD E EY +GG+ GE K+ LA+ +
Sbjct: 221 GGR---TEHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEAI 277
Query: 372 TEL 374
E
Sbjct: 278 QEF 280
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 234 bits (598), Expect = 2e-74
Identities = 88/335 (26%), Positives = 144/335 (42%), Gaps = 47/335 (14%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEE 140
E +KF + +G PS + LHLG+ + + L + D + EE
Sbjct: 1 ENMKKFRVLSGIQPSGK-LHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEE 59
Query: 141 S-QRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG 199
++ RE A D +A G D K+ IF + + ++ + ++ + F
Sbjct: 60 DLRQATREVAADYLAVGLDPEKSTIFLQSEV--PEHAELAWLLSCVTNFGELERMTQFKD 117
Query: 200 ED-------HIGKVSFPPVQE---MIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPY 249
+ IG +++P +Q ++Y+A L+P DQD +
Sbjct: 118 KSAKKGESIPIGLLTYPVLQAADILLYQA-------------------TLVPVGEDQDQH 158
Query: 250 FRMTRDVAPRIGYH------KPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 301
+TRD+A R + P + + + P L G GKMS SDPNSAI++ D K I
Sbjct: 159 LELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTI 217
Query: 302 KNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTG 361
+ KI K A G ++ +RK G EV + S F EDD+ LE I+ EY G + G
Sbjct: 218 RKKIKKAATDG--PTLIEYRK-GGKPEVCNLFEIYSAFFEDDSILE-IEAEYRGGELGCG 273
Query: 362 EVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 396
E K+ LA+ + E ++ Q R + ++ +
Sbjct: 274 ECKKELAEAIQEFLKPIQERREELREDP-AYLDDI 307
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y).
Length = 291
Score = 96.2 bits (240), Expect = 2e-22
Identities = 72/310 (23%), Positives = 119/310 (38%), Gaps = 35/310 (11%)
Query: 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI-----QLTDDEKCMWKNL 136
K +YTG P+ LHLG+LVP M Q A + + D +
Sbjct: 2 KERPLRVYTGFDPTGP-LHLGYLVPLMKLVQFQQAGHEVFFLIGDLTAIIGD-----PSK 55
Query: 137 SVEESQRLAR---ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNKVV 192
S E ENAK +ACG D K+ I ++ D++ + + + + +
Sbjct: 56 SEERKLLSREEVLENAKAQLACGLDPEKSEIVNNSDWLE---HLELAWLLRDLGNHFSLN 112
Query: 193 GIFGF-TGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFR 251
+ F + + + + E Y + + L D L P DQ +
Sbjct: 113 RMLQFKDVKKRLKQNPGISLGEFTYPLLQAA--DILLLK--AD----LQPGGSDQWGHIE 164
Query: 252 MTRDVAPRIGYHKPALIESSFFPALQGETG--KMSASDPNSAIYVTDSAKAIKNKINKYA 309
+ RD+A R P L G G KMS S NSAI++ D +++ KI + A
Sbjct: 165 LGRDLARRFNKKVFKKPVGLTNPLLTGLDGGKKMSKSAGNSAIFLDDEKESVYKKI-QKA 223
Query: 310 FSGGQESVELHRKLGANLEVDIPV-KYLSFFLEDDA--ELEHIKKEYGAGGMLTGEVKQR 366
++ E+ + L E+ + L FL E E + G + G++K+
Sbjct: 224 YTDPDR--EVRKDLKLFTELSNEEIEILEAFLGKGPKREAEELLAREVTGLVHGGDLKKA 281
Query: 367 LAKVLTELVE 376
A+ + L+E
Sbjct: 282 AAEAVNALLE 291
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated.
Length = 329
Score = 89.5 bits (223), Expect = 6e-20
Identities = 75/249 (30%), Positives = 110/249 (44%), Gaps = 52/249 (20%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTD-----DEKCMWK 134
E E+ Y G PS + +HLGHL+ LQ A FKV + L D ++K
Sbjct: 26 ESKEEPKAYIGFEPSGK-IHLGHLLTMNKLADLQKAGFKV--TVLLADWHAYLNDKG--- 79
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDF----DYVGGAFYKNMVKVAKCVTY 188
+EE +++A N K A G D KT F+ S+F +Y ++K+AK T
Sbjct: 80 --DLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWL-----LVLKLAKNTTL 132
Query: 189 NKV---VGIFGFTGEDHIGKVSFPPVQEMIY---KAVPSFPSSFPHLFSGKDHLRCLIPC 242
+ + I G E+ P V +++Y + F +L I
Sbjct: 133 ARARRSMTIMGRRMEE-------PDVSKLVYPLMQVADIF------------YLDVDIAV 173
Query: 243 A-IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 301
+DQ + R+V P++GY KP I + L G KMS S P SAI+V DS + I
Sbjct: 174 GGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEI 233
Query: 302 KNKINKYAF 310
+ KI K A+
Sbjct: 234 RRKIKK-AY 241
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 65.5 bits (161), Expect = 7e-12
Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 239 LIPCAIDQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPN 289
L+P DQ + +TRD+A R P LI + L G T KMS SDPN
Sbjct: 141 LVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPN 200
Query: 290 --SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELE 347
+ I + D K I KI K A + + E+ L EV + S + +E
Sbjct: 201 DNNTINLLDDPKTIAKKIKK-AVTDSERLREIRYDLPNKPEVSNLLTIYSALSGE--SIE 257
Query: 348 HIKKEYGAGGMLTGEVKQRLAKVLTELVE 376
++ EY AGG G+ K+ LA+ + E +
Sbjct: 258 ELEAEYEAGGKGYGDFKKDLAEAVVEFLA 286
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 61.1 bits (149), Expect = 1e-10
Identities = 71/301 (23%), Positives = 124/301 (41%), Gaps = 48/301 (15%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTD--DEKCMWKNLSVE 139
+Y G P++ +LHLGHLVP M + Q A +V ++I + D + K L +E
Sbjct: 3 VYIGFDPTAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLE 62
Query: 140 ESQRLARENAKDIIACG-FDVTKTFIFSD-FDYVGGAFYKNMVKVAKCVTYNKVVGIFGF 197
+ A+ K + A F + F + D++ + + +++ K T N+++
Sbjct: 63 LIRENAKYYKKQLKAILDFIPPEKAKFVNNSDWLLSLYTLDFLRLGKHFTVNRMLRRDAV 122
Query: 198 TGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAI---DQDPYFRMTR 254
+ + E IY + ++ F +L D + DQ + R
Sbjct: 123 KVR--LEEEEGISFSEFIYPLLQAY--DFVYLD--VD-------LQLGGSDQRGNITLGR 169
Query: 255 DVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKYAFSGG 313
D+ ++GY K + + L G GKMS S+ N+ V DS + KI AF
Sbjct: 170 DLIRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDPD 226
Query: 314 QESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE 373
+K +F D E+E +++E+ G L + K+ LA+ LT+
Sbjct: 227 VLEF---------------LKLFTFL--DYEEIEELEEEHAEGP-LPRDAKKALAEELTK 268
Query: 374 L 374
L
Sbjct: 269 L 269
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 60.6 bits (148), Expect = 3e-10
Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 15/147 (10%)
Query: 239 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE-------SSFFPALQGETGKMSASDPN 289
L+P DQ P TR++ R Y L+E + P L G+ KMS S N
Sbjct: 145 LVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGK-AKMSKSLGN 203
Query: 290 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 349
AIY++D A IK K+ ++ + + + +E ++ YL F D AE+ +
Sbjct: 204 -AIYLSDDADTIKKKVMS-MYT---DPNHIRVEDPGKVEGNVVFTYLDAFDPDKAEVAEL 258
Query: 350 KKEYGAGGMLTGEVKQRLAKVLTELVE 376
K Y GG+ + K+ L +VL EL+
Sbjct: 259 KAHYQRGGLGDVKCKRYLEEVLQELLA 285
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 401
Score = 53.8 bits (130), Expect = 6e-08
Identities = 68/346 (19%), Positives = 114/346 (32%), Gaps = 77/346 (22%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTDD 128
+ L + +Y G P++ +LHLGHLVP M + QDA K ++I + D
Sbjct: 22 EELRKLLEEGPLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIGD- 80
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA-FYKNM------VK 181
+ EE + L RE + F+ + ++V + + K +
Sbjct: 81 -----PSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRD 135
Query: 182 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIY---KAVPSFPSSFPHLFSGKDHLRC 238
V K + N+++ + + E Y +A +L KD
Sbjct: 136 VGKHFSVNRMLRRDDVKKR--LEREQGISFTEFNYPLLQAYDFV-----YL--NKD---- 182
Query: 239 LIPCAI---DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGE-------TGKMSASDP 288
+ DQ RD+ R+G K + + L G+ S+
Sbjct: 183 ---LQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGGAVWLDSEK 239
Query: 289 NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELE 347
S I++ K ++L E+E
Sbjct: 240 TSPYDFYQYWMNIEDADVK--------------------------RFLKLLTFLSLEEIE 273
Query: 348 HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 393
I+K G E K+ LAK +T+LV + A AA +E F
Sbjct: 274 EIEKYVLKGPEPR-EAKKLLAKEVTKLVHGEEAAEAAE-EEFEKLF 317
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase. This tyrosyl-tRNA
synthetase model starts picking up tryptophanyl-tRNA
synthetases at scores of 0 and below. The proteins found
by this model have a deep split between two groups. One
group contains bacterial and organellar eukaryotic
examples. The other contains archaeal and cytosolic
eukaryotic examples [Protein synthesis, tRNA
aminoacylation].
Length = 377
Score = 50.5 bits (121), Expect = 8e-07
Identities = 62/289 (21%), Positives = 109/289 (37%), Gaps = 46/289 (15%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVP 120
+RG+ + ++L K LY G P++ +LHLGHLVP + + Q A +V
Sbjct: 9 KKRGLEVQVPEEEELLK--LLERKIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGHEVI 66
Query: 121 LVI-----QLTD--DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 173
+++ + D + K L+ EE Q A EN K IA D K ++ +++
Sbjct: 67 VLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLK 125
Query: 174 AFYKNMV-KVAKCVTYNKVVGIFGFTGEDHIGKVSF-PPVQEMIYKAVPSFPSSFPHLFS 231
Y + + + K + N+++ + ++ + E IY + ++ F +L
Sbjct: 126 LNYIDFIRDLGKIFSVNRML-----RRDAFSSRLERGISLSEFIYPLLQAY--DFVYL-- 176
Query: 232 GKDHLRCLIPCAI---DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------E 279
D I DQ RD+ R P+L P L E
Sbjct: 177 NVD-------LQIGGSDQWGNILKGRDLIRRNL---PSLGFGLTVPLLTPADGEKMGKSE 226
Query: 280 TGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGAN 326
G +S + + + ++ KI K G E +E +L
Sbjct: 227 GGAVSLDEGKYDFYQFWINTPDEDVKKILKLFTFLGLEEIEALVELKGP 275
>gnl|CDD|240282 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional.
Length = 383
Score = 47.0 bits (112), Expect = 1e-05
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 263 HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 307
KP ++ P L KMS SDPNSAI++ DS + + KI K
Sbjct: 238 KKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMEDSEEDVNRKIKK 282
>gnl|CDD|237360 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.
Length = 410
Score = 41.8 bits (99), Expect = 5e-04
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG D + + ++G+ LY G P++ +LH+GHLVP M K QDA P+++
Sbjct: 12 RGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHRPVIL 71
>gnl|CDD|235645 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.
Length = 408
Score = 41.6 bits (99), Expect = 6e-04
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ D + L+ E +Y G P++ +LHLGHLVP + + QDA
Sbjct: 13 RGLIEQITDEEE-LEEKLAKEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDA 64
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA
and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA
synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. These enzymes attach Tyr or Trp,
respectively, to the appropriate tRNA. These class I
enzymes are homodimers, which aminoacylate the 2'-OH of
the nucleotide at the 3' of the appropriate tRNA. The
core domain is based on the Rossman fold and is
responsible for the ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. It contains the class
I characteristic HIGH and KMSKS motifs, which are
involved in ATP binding.
Length = 273
Score = 37.3 bits (86), Expect = 0.011
Identities = 56/308 (18%), Positives = 97/308 (31%), Gaps = 57/308 (18%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
LY G P++++LH+GHL+ + + Q A P+ + + E E
Sbjct: 2 LYCGIDPTADSLHIGHLIGLLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPE 61
Query: 148 N--------AKDIIACGFDVTKT--FIFSDFDYVGGAFYKNMVKVAKCVTY-NKVVGIFG 196
A +A G T +F++ D+ G + ++ Y N +
Sbjct: 62 EVRQNIRRIAAQYLAVGIFEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTS 121
Query: 197 FTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRD 255
F G +S +A F L + C + P DQ + R+
Sbjct: 122 FQSRSEEG-ISATEFTYPPLQAA-----DFLLLNT---TEGCDIQPGGSDQWGNITLGRE 172
Query: 256 VAPR-----IGYHK-PALIESSFFPALQGETGKMSASDPNSAIYVT--DSAKAIKNKINK 307
+A R I L+ P K S+ T S
Sbjct: 173 LARRFNGFTIAEGLTIPLVTKLDGP-------KFGKSESGPKWLDTEKTSPYEF------ 219
Query: 308 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAE-LEHIKKEYGAGGMLTGEVKQR 366
Y F ++ L KY +F +++ E LE + E ++
Sbjct: 220 YQFWINAVDSDVINIL----------KYFTFLSKEEIERLEQEQYE----APGYRVAQKT 265
Query: 367 LAKVLTEL 374
LA+ +T+
Sbjct: 266 LAEEVTKT 273
>gnl|CDD|173541 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provisional.
Length = 682
Score = 36.8 bits (85), Expect = 0.021
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 244 IDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 302
+DQ + R+ IG KP ++ L+ KMS SDP+SAI++ D+ + +
Sbjct: 183 LDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVA 242
Query: 303 NKI 305
KI
Sbjct: 243 RKI 245
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase.
Length = 389
Score = 35.9 bits (83), Expect = 0.031
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 23/92 (25%)
Query: 239 LIPCAIDQDPYFRMTRDVAPRI-------------GYHKPAL-IESSFFP-------ALQ 277
L+P DQ + +TRD+A R+ G + + P +L
Sbjct: 187 LVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLT 246
Query: 278 GETGKMSASDPN--SAIYVTDSAKAIKNKINK 307
T KMS S P+ S I + D I NKI +
Sbjct: 247 DGTSKMSKSAPSDQSRINLLDPPDVIANKIKR 278
>gnl|CDD|224465 COG1548, COG1548, Predicted transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism].
Length = 330
Score = 30.9 bits (70), Expect = 1.2
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 364 KQRLAKVLTELVERHQVARAAV--TDEMVDAF 393
K RL + L E+V + V V T E+ DAF
Sbjct: 38 KDRLEETLKEIVHKDNVDYVGVVMTAELADAF 69
>gnl|CDD|236054 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 640
Score = 30.6 bits (70), Expect = 1.5
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 275 ALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVE-LHRKLG 324
A T K+S P ++ ++++I++ G+ +V+ HR+LG
Sbjct: 463 ADTIGTPKVSTDHPE----FKEAEAEVQDRIDRLLNIKGKRTVDSFHRELG 509
>gnl|CDD|227204 COG4867, COG4867, Uncharacterized protein with a von Willebrand
factor type A (vWA) domain [General function prediction
only].
Length = 652
Score = 29.6 bits (66), Expect = 3.7
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 20 WEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDA 79
W S + Y+++ D G + LDQ Q L G RR V DLND+LD
Sbjct: 140 WR-SGQAREKYEQIKDLLGRELLDQRFAGMKQALAGATDDD--RRRVTEMLDDLNDLLDK 196
Query: 80 YEKGE 84
+ +GE
Sbjct: 197 HARGE 201
>gnl|CDD|202477 pfam02936, COX4, Cytochrome c oxidase subunit IV. Cytochrome c
oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the
terminal oxidase in the mitochondrial electron transport
chain. This family is composed of cytochrome c oxidase
subunit IV. The Dictyostelium member of this family is
called COX VI. The yeast protein MTC3 appears to be the
yeast COX IV subunit.
Length = 142
Score = 28.5 bits (64), Expect = 3.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 120 PLVIQLTDDEKCMWKNLSVEESQRLAR 146
L++ L + EK WK+LS+EE + L R
Sbjct: 31 ELIMALREKEKGDWKSLSLEEKKALYR 57
>gnl|CDD|147759 pfam05782, ECM1, Extracellular matrix protein 1 (ECM1). This
family consists of several eukaryotic extracellular
matrix protein 1 (ECM1) sequences. ECM1 has been shown
to regulate endochondral bone formation, stimulate the
proliferation of endothelial cells and induce
angiogenesis. Mutations in the ECM1 gene can cause
lipoid proteinosis, a disorder which causes generalised
thickening of skin, mucosae and certain viscera.
Classical features include beaded eyelid papules and
laryngeal infiltration leading to hoarseness.
Length = 419
Score = 29.2 bits (65), Expect = 3.9
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 193 GIFGFTGEDHIG-KVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFR 251
G F +G+ + + F +QE+ Y A PS P S L P DP F
Sbjct: 23 GGFKASGQRELTPERLFQHLQEVGYAAPPSPPLS--------RRLPVDHPVTSQHDPPFE 74
Query: 252 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 292
+V P + E + L K + P AI
Sbjct: 75 GQSEVQPPPSPEDIPVYEEDWPTFLNPNVDKAGPAVPQEAI 115
>gnl|CDD|215101 PLN00203, PLN00203, glutamyl-tRNA reductase.
Length = 519
Score = 28.9 bits (65), Expect = 5.3
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 354 GAGGMLTGEVKQRLAKVLTEL--VERHQVARAAVTDEMVDAFMAVRPLPNMFD 404
GAG M VK ++K T++ V R + AA+ +E D + +PL M
Sbjct: 273 GAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLA 325
>gnl|CDD|221242 pfam11816, DUF3337, Domain of unknown function (DUF3337). This
family of proteins are functionally uncharacterized.
This family is only found in eukaryotes. This presumed
domain is typically between 285 to 342 amino acids in
length.
Length = 320
Score = 28.7 bits (64), Expect = 6.5
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 17/70 (24%)
Query: 332 PVKYLSFFLE--DDAELEHIKKEYGAGG--------MLTGEVKQRLAKVLTELVERHQVA 381
P K +SF L+ D + +K + G ML R+ K+L + ER +
Sbjct: 211 PPK-ISFTLQPWDGSLPPLVKPDPINEGNSRLNAPRML------RVKKILAYVAERFEPD 263
Query: 382 RAAVTDEMVD 391
+ T EM
Sbjct: 264 PESRTSEMKK 273
>gnl|CDD|130743 TIGR01682, moaD, molybdopterin converting factor, subunit 1,
non-archaeal. This model describes MoaD. It excludes
archaeal homologs, since many Archaea have two MoaD-like
proteins, suggesting two different functions. The Pfam
model pfam02597 describes both the thiamine biosynthesis
protein ThiS and this protein, MoaD, a subunit (together
with MoaE, pfam02391) of the molybdopterin converting
factor. Both ThiS and MoaD are involved in sulfur
transfer reactions. Distribution of this family appears
limited to species that also have a member of pfam02391,
but a number of Archaea have two different members,
suggesting functionally distinct subtypes. The
C-terminal Gly-Gly of this model is critical to function
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Molybdopterin].
Length = 80
Score = 26.5 bits (59), Expect = 7.2
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 333 VKYLSF-FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVD 391
+K L F L + A + E GE+K+ LAK EL AV +E V
Sbjct: 1 IKVLYFARLREQAGTDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVT 60
Query: 392 AFMAVRP 398
+
Sbjct: 61 DDALLNE 67
>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional.
Length = 478
Score = 28.4 bits (63), Expect = 7.4
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 333 VKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVL 371
VK+ F DD L + EYG+GG L ++KQRL + L
Sbjct: 128 VKHFDDFKSDDKLL--LIMEYGSGGDLNKQIKQRLKEHL 164
>gnl|CDD|214538 smart00146, PI3Kc, Phosphoinositide 3-kinase, catalytic domain.
Phosphoinositide 3-kinase isoforms participate in a
variety of processes, including cell motility, the Ras
pathway, vesicle trafficking and secretion, and
apoptosis. These homologues may be either lipid kinases
and/or protein kinases: the former phosphorylate the
3-position in the inositol ring of inositol
phospholipids. The ataxia telangiectesia-mutated gene
produced, the targets of rapamycin (TOR) and the
DNA-dependent kinase have not been found to possess
lipid kinase activity. Some of this family possess PI-4
kinase activities.
Length = 240
Score = 28.0 bits (63), Expect = 8.7
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 70 HRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129
H D IL K F VPF T + D V+ +
Sbjct: 162 HIDFGFILGNGPKLFGF---------------PERVPFRLTPEMVD------VMGDSGYF 200
Query: 130 KCMWKNLSVEESQRLARENAKDIIAC 155
E + R R+N+ I++
Sbjct: 201 GLFRSL--CERALRALRKNSNLIMSL 224
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.410
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,285,155
Number of extensions: 2117575
Number of successful extensions: 2316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2277
Number of HSP's successfully gapped: 39
Length of query: 404
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 305
Effective length of database: 6,546,556
Effective search space: 1996699580
Effective search space used: 1996699580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)