RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015582
(404 letters)
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 489 bits (1260), Expect = e-173
Identities = 243/404 (60%), Positives = 309/404 (76%), Gaps = 9/404 (2%)
Query: 4 NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
N E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH F
Sbjct: 25 NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF 84
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
LRRG+FF+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPL
Sbjct: 85 LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPL 144
Query: 122 VIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNM 179
VIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+
Sbjct: 145 VIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNV 204
Query: 180 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCL 239
VK+ K VT+N+V GIFGFT D IGK+SFP +Q A PSF +SFP +F + ++CL
Sbjct: 205 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDIQCL 259
Query: 240 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 299
IPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK
Sbjct: 260 IPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAK 319
Query: 300 AIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGML 359
IK K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G ML
Sbjct: 320 QIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAML 379
Query: 360 TGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 403
TGE+K+ L +VL L+ HQ R VTDE+V FM R L F
Sbjct: 380 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 423
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 489 bits (1261), Expect = e-172
Identities = 242/404 (59%), Positives = 308/404 (76%), Gaps = 9/404 (2%)
Query: 4 NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
N E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH F
Sbjct: 72 NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF 131
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
LRRG+FF+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPL
Sbjct: 132 LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPL 191
Query: 122 VIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNM 179
VIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+
Sbjct: 192 VIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNV 251
Query: 180 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCL 239
VK+ K VT+N+V GIFGFT D IGK+SFP +Q A PSF +SFP +F + ++CL
Sbjct: 252 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQ-----AAPSFSNSFPQIFRDRTDIQCL 306
Query: 240 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 299
IPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK
Sbjct: 307 IPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAK 366
Query: 300 AIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGML 359
IK K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G ML
Sbjct: 367 QIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAML 426
Query: 360 TGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 403
TGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 427 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAAAL 470
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 483 bits (1244), Expect = e-171
Identities = 155/388 (39%), Positives = 228/388 (58%), Gaps = 23/388 (5%)
Query: 14 EQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDL 73
E V+PWEV G +DYDKLI FG L + L+++ LT +F RR FF+HRD
Sbjct: 4 EFKVTPWEVE--GVVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDY 61
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW 133
+ IL YE+G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++
Sbjct: 62 DLILKDYEEGRGFFLYTGRGPSGP-MHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLF 120
Query: 134 K-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
K NL+ ++++R A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++
Sbjct: 121 KENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAK 178
Query: 193 GIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRM 252
+FGFT + IG + FP +Q P+F CLIP AIDQDPY+R+
Sbjct: 179 AVFGFTEQSKIGMIFFPAIQ-----IAPTFFERKR----------CLIPAAIDQDPYWRL 223
Query: 253 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSG 312
RD A +GY+K A + S F P+L +GKMSAS P +AIY+TDS + ++ K+ K+ +G
Sbjct: 224 QRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTG 283
Query: 313 GQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVL 371
G+ +++ R+ G E + K+L FF EDD +L+ G + GE K+ L +
Sbjct: 284 GRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKI 343
Query: 372 TELVERHQVARAAVTDEMVDAFMAVRPL 399
E ++ HQ R +++V+ F L
Sbjct: 344 QEFLKEHQ-RRRKKAEKLVEKFKYTGKL 370
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 483 bits (1244), Expect = e-170
Identities = 206/406 (50%), Positives = 283/406 (69%), Gaps = 13/406 (3%)
Query: 2 DKNEEKQREEEREQVVSPWEVS-------SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLT 54
+ E + + +EQVV+PW+V + IDYDKLI +FG + +++ + R +++T
Sbjct: 12 QQVSELKSTDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVT 71
Query: 55 GRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ 114
GR PH FLR+G+FF+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ
Sbjct: 72 GREPHHFLRKGLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQ 131
Query: 115 DAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 173
+ F VPLVI+LTDDEK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GG
Sbjct: 132 EVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGG 191
Query: 174 AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGK 233
AFY+ +V+V++ +T + +FGF D IGK F +Q +FPSSFP++
Sbjct: 192 AFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQ-----IATAFPSSFPNVLGLP 246
Query: 234 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 293
D CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI+
Sbjct: 247 DKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIF 306
Query: 294 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 353
+TD+ K I+ KINKYAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y
Sbjct: 307 MTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKY 366
Query: 354 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
+G +L+GE+K+ + L E V+ Q RA V +E +D FM L
Sbjct: 367 KSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 467 bits (1202), Expect = e-165
Identities = 207/386 (53%), Positives = 279/386 (72%), Gaps = 9/386 (2%)
Query: 15 QVVSPWEVS--SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72
PWEV ++ IDY+KLIDKFGC+ + + +++R++RLTG+ H F RR +F +HRD
Sbjct: 2 PGSMPWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRD 61
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
ILD YEKGE FYLYTGRGPSSE+LH+GHLVPF+FTKYLQD FKVPLVIQLTDDEK +
Sbjct: 62 FEKILDVYEKGELFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFI 121
Query: 133 WKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKV 191
+K+ L++EE+ A EN KDIIACGFD TFIF++ +Y+ Y +++++ K ++ +++
Sbjct: 122 FKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA-ELYPDILRIEKKISCSQI 180
Query: 192 VGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFR 251
IFGF ++GK +FP VQ A P+F SSFPH+F G+ + CL+P AIDQDPYFR
Sbjct: 181 KSIFGFKDSCNVGKFAFPAVQ-----AAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFR 235
Query: 252 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFS 311
M RDVAPR+GY KP+ I S F P+LQG KMSAS NS+I+V D+ ++I+NKI KYAFS
Sbjct: 236 MVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFS 295
Query: 312 GGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVL 371
GGQ + E R+LGANL+VD+ +YL F +EDD +LE I K+Y +G ML+GE+K L + L
Sbjct: 296 GGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQEL 355
Query: 372 TELVERHQVARAAVTDEMVDAFMAVR 397
+L + HQ R A+ D+++ F
Sbjct: 356 VKLTKNHQKNREAINDDVIAKFTNKS 381
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 460 bits (1185), Expect = e-162
Identities = 173/401 (43%), Positives = 260/401 (64%), Gaps = 15/401 (3%)
Query: 5 EEKQREEEREQVVSPWEVSSSG------KIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPP 58
+ + EQ ++PW+V IDYDK+I++FGC++ +Q+L DR+++L+G+P
Sbjct: 15 QTQGPGSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPA 74
Query: 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFK 118
H F RRG+ FAHRD N +LD FYLYTGRGPSS+ +H+GH +PF+ KY+QDAFK
Sbjct: 75 HYFFRRGIVFAHRDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFK 134
Query: 119 VPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN 178
+ LVIQ+TDDEK +WK++ +E++ REN KDI+ GFD T+IFS+ + F +N
Sbjct: 135 IRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEA-SHHFEEN 193
Query: 179 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRC 238
++K++K + N+ + +FGF +IG+V FP + P F SSF + G C
Sbjct: 194 ILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKE-----IAPCFSSSFRFIGKGA---MC 245
Query: 239 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 298
L+P A+DQDP+FR+ RD A +G KP+ I S P L+G KMSASDPNS+IY+ D+
Sbjct: 246 LVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQ 305
Query: 299 KAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGM 358
I+ KI YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE + Y G +
Sbjct: 306 DTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEI 365
Query: 359 LTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
+ E+K++ V+ E V R+Q +R VTD+ + AF+ +
Sbjct: 366 TSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 455 bits (1173), Expect = e-160
Identities = 208/393 (52%), Positives = 281/393 (71%), Gaps = 10/393 (2%)
Query: 8 QREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVF 67
E VV+PW V G ++YDKLI FG +D++L++R++R+ G+ PH FLRRG+F
Sbjct: 3 HHHHHHEAVVTPWSVE--GDVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIF 60
Query: 68 FAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
F+HRDLN +LD YE G+ FYLYTGRGPSSE++H+GHL+PFMFTK+LQD+F+VPLVIQ+TD
Sbjct: 61 FSHRDLNLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTD 120
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
DEK ++N+ +E+ + + EN KDIIA GFD TFIF DFDY+ G Y+ + K+ + T
Sbjct: 121 DEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM-GCMYRTVAKIERAFT 179
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFS-GKDHLRCLIPCAIDQ 246
++V G FGF ED+ G+ FP +Q PSF ++FPH+F ++ CLIP AIDQ
Sbjct: 180 ASQVRGCFGFAMEDNCGRWMFPAIQA-----APSFSAAFPHIFPPSMGNVFCLIPQAIDQ 234
Query: 247 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 306
DPYFR+TRD+APR+GY KPA+I S FFP L G GKMS+S A+ +TD+ K +K+KIN
Sbjct: 235 DPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGT-AVLLTDTEKMVKDKIN 293
Query: 307 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQR 366
K+AFSGG + + H LGAN+EVD+P+++LSFFLEDD EL +KKEY G ++TGEVK+
Sbjct: 294 KHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKL 353
Query: 367 LAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
L +T + + HQ R VTDE V F + R +
Sbjct: 354 LINTITAITKTHQEKRKLVTDEDVQLFTSTRIM 386
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 448 bits (1153), Expect = e-157
Identities = 109/393 (27%), Positives = 210/393 (53%), Gaps = 13/393 (3%)
Query: 10 EEEREQVVSPWEV---SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGV 66
Q +P ++ ++ DY++LI+ G + + R+++L+G+ PH +L RGV
Sbjct: 4 HHHHHQTQTPSQLLQSFTTRTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGV 63
Query: 67 FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT 126
F A + L+ LD E + +++ + P E + L + F +YLQDAF + ++IQ+
Sbjct: 64 FLAEKSLDKFLDDVEAKKPTFIFIQKYPQKE-VALEEYITLEFARYLQDAFNIQVIIQIL 122
Query: 127 DDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV 186
DD K + + ++ E+ +++ + K I+A GF+ KTFI++D+ Y G Y+ + V K
Sbjct: 123 DDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG-KMYRTISLVEKAT 181
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 246
YN V F F D+IGK++ P + F S+ H FS RCL+ +I
Sbjct: 182 AYNVVQPFFNFEYSDNIGKLASPSIM-----TASMFSQSYSHFFSSP--ARCLVLDSIKN 234
Query: 247 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 306
+ + +A + + +P ++ P L G K +++I ++D+AK ++ KIN
Sbjct: 235 VQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSILLSDNAKQVERKIN 293
Query: 307 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQR 366
K AFSGG+ + E H+KLG ++D+ + L+ F D+A+++ ++++Y G +L+GE+K+
Sbjct: 294 KLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKI 353
Query: 367 LAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
++ + + + + + +T + A+++
Sbjct: 354 VSASMKDFIVAYDAKKKPITTAYLKAYISKTKF 386
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 414 bits (1064), Expect = e-143
Identities = 181/451 (40%), Positives = 247/451 (54%), Gaps = 53/451 (11%)
Query: 1 MDKNEEKQREEEREQVVSPWEV------SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLT 54
M + Q P + + + + Y+ +I +FG + L+ R + +T
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMMETDATAEAAAVAYEDIITRFGAAPITDDLLKRFETVT 60
Query: 55 GRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ 114
G H LRRG+F+AHRD + L YEKG Y+YTGRGPSS ALHLGHL+PF+FTKYLQ
Sbjct: 61 GTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFIFTKYLQ 120
Query: 115 DAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG- 172
DAFK +VIQ+TDDEK + ++LS E REN KDIIACGFD KTFIF + Y+
Sbjct: 121 DAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSL 180
Query: 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQ-------------------- 212
Y+ V + + +++ FGF+ + ++G +FPP Q
Sbjct: 181 KNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLP 240
Query: 213 ------------------------EMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 248
+ + V FP + CLI I+QDP
Sbjct: 241 VGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKA-MCLIASGIEQDP 299
Query: 249 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKY 308
YFR+ RD+APR+G+ K A + F P LQG KMSASDPNSAIY+TD+ IKNKIN+Y
Sbjct: 300 YFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIKNKINRY 359
Query: 309 AFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLA 368
AFSGG+++ E HR GA+L VD+ V+YL F++DDAELE +K +Y G +LTGEVK L
Sbjct: 360 AFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLI 419
Query: 369 KVLTELVERHQVARAAVTDEMVDAFMAVRPL 399
+L L++ H R V M+++F + L
Sbjct: 420 GILQGLIKEHAERRDKVDTTMIESFTVKKEL 450
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 271 bits (694), Expect = 1e-88
Identities = 59/346 (17%), Positives = 122/346 (35%), Gaps = 31/346 (8%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
+ L+ + + G F Y G PS +H+ + + +
Sbjct: 17 QLLSIAEECETLDRLKQLVDSGRIFTAYNGFEPSGR-IHIAQALITVMNTNNMIECGGQM 75
Query: 122 VIQLTDDEKCM--WKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYK 177
+I + D M N + + + L R + ACG ++ T S+F ++ +
Sbjct: 76 IIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIE 135
Query: 178 NMVKVAKCVTYNKV---VGIFGFTGEDHI--GKVSFPPVQEMIYKAVPSFPSSFPHLFSG 232
M+ +A+ T ++V I G D + ++ +P +Q A F
Sbjct: 136 RMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQ-----AADVFELVPEG---- 186
Query: 233 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 292
+ IDQ + + A G P + +L G KMS SDP AI
Sbjct: 187 ----IDICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAI 242
Query: 293 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 352
++ D+ + + KI++ + + + L+ + ++E I+++
Sbjct: 243 FMDDTEQEVSEKISRAYCTDETF--DNPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQED 300
Query: 353 YGAGGMLTGEVKQRLAKVLTELV----ERHQVARAAVTDEMVDAFM 394
+ M E+K +A + ++ E + + V ++
Sbjct: 301 F--SSMNKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQ 344
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 118 bits (298), Expect = 4e-30
Identities = 71/357 (19%), Positives = 126/357 (35%), Gaps = 52/357 (14%)
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEK 130
+ D+L+ + LY G P+ H G+ VP A +V + L D
Sbjct: 28 IIKDVLEV--QKRHLKLYWGTAPTGR-PHCGYFVPMTKLADFLKAGCEV--TVLLADLHA 82
Query: 131 CMWKNLSVEESQRLARENAKDII--------ACGFDVTKT-FIFSDFDYVGGAFYKNMVK 181
+ + E + AK + + K F+ + + ++ +
Sbjct: 83 FLDNMKAPLE---VVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFR 139
Query: 182 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIP 241
++ V+ N D + +V+ P + +IY + + F L
Sbjct: 140 LSNIVSQNDAKRAG----ADVVKQVANPLLSGLIYPLMQALDEQF---------LDVDCQ 186
Query: 242 CA-IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 300
+DQ F + + P +GY K A + + P L GKMSASDPNS I + + K
Sbjct: 187 FGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQG-GKMSASDPNSKIDLLEEPKQ 245
Query: 301 IKNKINKYAFSGGQ-------ESVELHRKLGANLEVDIPVKYLSFFLEDD---------A 344
+K KIN S G V+ + E+ + FF++
Sbjct: 246 VKKKINSAFCSPGNVEENGLLSFVQYV--IAPIQELKFGTNHFEFFIDRPEKFGGPITYK 303
Query: 345 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 401
E +K + + ++K +A + EL+E + A E +A P+
Sbjct: 304 SFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFAN-NKEFQEASEKGYPVAT 359
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 108 bits (272), Expect = 1e-26
Identities = 53/327 (16%), Positives = 112/327 (34%), Gaps = 48/327 (14%)
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMF-TKYLQDA---FKVPLVIQ--LTD 127
+++ K Y G PS +H+ + L F + +
Sbjct: 45 DELRVKLLLKRKLICYDGFEPSGR-MHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLN 103
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMV-KVAK 184
++ M +L ++ +++ + +CG ++ S+ Y ++V +++
Sbjct: 104 NK--MSGDL--KKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISR 159
Query: 185 CVTYNKVVGIFGFTG-----EDHIGKVSFPPVQ---EMIYKAVPSFPSSFPHLFSGKDHL 236
N++ G E++ ++ +P +Q
Sbjct: 160 SFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCADIFFLNVD----------------- 202
Query: 237 RCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES-SFFPALQGETGKMSASDPNSAIYVT 295
+ IDQ + R+ K +I S P L KMS SD NSAI++
Sbjct: 203 --ICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMD 260
Query: 296 DSAKAIKNKINK-YAFSGGQE-----SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 349
DS + KI K Y E + + E ++ K + + L+ +
Sbjct: 261 DSESDVNRKIKKAYCPPNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQEL 320
Query: 350 KKEYGAGGMLTGEVKQRLAKVLTELVE 376
+ +Y G + ++K +A + +L++
Sbjct: 321 EHDYVNGFIHPLDLKDNVAMYINKLLQ 347
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 104 bits (260), Expect = 3e-24
Identities = 58/329 (17%), Positives = 111/329 (33%), Gaps = 58/329 (17%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFM--FTKYLQDAFKVPLVI----QLTDDEKCMWK 134
EK Y G PS +H+ + K + + L +D+ +
Sbjct: 36 EKKPLIRCYDGFEPSGR-MHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDK--VGG 92
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDFDYVGGAFY-KNMVKVAKCVTYNKV 191
L E+ + + R + A G D+ K F++ S+ Y + ++ + + T ++
Sbjct: 93 EL--EKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARI 150
Query: 192 ---VGIFGFTGEDH-IGKVSFPPVQ---EMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAI 244
I G T +V +P +Q KA D +
Sbjct: 151 KKCCTIMGKTEGTLTAAQVLYPLMQCCDIFFLKA---------------DI----CQLGL 191
Query: 245 DQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 303
DQ + R+ IG KP ++ L+ KMS SDP+SAI++ D+ + +
Sbjct: 192 DQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVAR 251
Query: 304 KINKYAF-------SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL---------E 347
KI + A+ + V + + + A E
Sbjct: 252 KIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYE 310
Query: 348 HIKKEYGAGGMLTGEVKQRLAKVLTELVE 376
+++ + + + +K L + L+E
Sbjct: 311 DLEQAFVSDEVSEDALKSCLIDEVNALLE 339
Score = 86.4 bits (214), Expect = 2e-18
Identities = 30/250 (12%), Positives = 74/250 (29%), Gaps = 37/250 (14%)
Query: 139 EESQRLARENAKDIIACGFDVTKTFIF-SDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFG 196
++ + N + A G + + ++ + V +A+ + V ++G
Sbjct: 438 KDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG 497
Query: 197 FTGEDHIGKVSFPPVQ---EMIYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT 253
+ G+V ++ ++ H +
Sbjct: 498 GEVRN-AGQVIAALMRVATALMLSV---------------SH----VISTSLDGHINAFA 537
Query: 254 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 313
R+ PAL + + +Y+ D+ I+ KI K A+S
Sbjct: 538 REYTKERI--DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAP 594
Query: 314 QES----VELHRKL---GANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQR 366
E + + + L L ++ E + + G+G + ++K
Sbjct: 595 NEEANPVISVAQHLLAQHGALSIERGEANGGNV--SYNTPEALVADCGSGALHPADLKAA 652
Query: 367 LAKVLTELVE 376
+ ++L +
Sbjct: 653 VLQLLLDRSA 662
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 96.8 bits (241), Expect = 2e-22
Identities = 69/331 (20%), Positives = 117/331 (35%), Gaps = 45/331 (13%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMW 133
++ G + Y G PS H+G LV K L +A + +
Sbjct: 25 ELKGLLASGARIKGYIGYEPSGV-AHIGWLVWMYKVKDLVEAGVDF--SVLEATWHAYIN 81
Query: 134 KNL--SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GGAFYKNMVKVAKCVTYNK 190
L ++ + AR + + A G V + + ++ +++VAK + +
Sbjct: 82 DKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLAR 141
Query: 191 VVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPY 249
V G ++IY + ++ I +DQ
Sbjct: 142 VRRALTIMGRRAEEAEV--DASKLIYPLMQVSDIF---------YMDLDIALGGMDQRKA 190
Query: 250 FRMTRDVAPRIGYHKPALIESSFFPALQG---------------ETGKMSASDPNSAIYV 294
+ RDVA ++G KP I + +LQG KMS S P +A++V
Sbjct: 191 HMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFV 250
Query: 295 TDSAKAIKNKINKYAFSGGQ-------ESVELH--RKLGANLEVDIPVKYLSFFLEDDAE 345
DS I+ KI K Q E + G L VD P KY +
Sbjct: 251 VDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGP--VEYTS 308
Query: 346 LEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 376
E ++++Y G + ++K +A+ L E+V
Sbjct: 309 YEELERDYTDGRLHPLDLKNAVAESLIEVVR 339
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 93.8 bits (233), Expect = 2e-21
Identities = 65/354 (18%), Positives = 118/354 (33%), Gaps = 76/354 (21%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDA-FKVPLVI-----QLTD 127
++ +E G Y G S +HLG L+ Q A K + + + D
Sbjct: 23 NLRHLFEIGAPLQHYIGFEISGY-IHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWIND 81
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMVKVAKC 185
+ + + K I G D K S+ G +++ ++ ++K
Sbjct: 82 KLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEI-LEKGDYWQTVIDISKN 140
Query: 186 VTYNKVVGIF-----GFTGEDHIGKVSFPPVQ---EMIYKAVPSFPSSFPHLFSGKDHLR 237
VT ++V+ K+ +P +Q
Sbjct: 141 VTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIFYQGVT------------------ 182
Query: 238 CLIPCAIDQDPYFRMTRDVAPRIGYH---------KPALIESSFFPALQGE--------- 279
+ +DQ + +VA ++ YH KP + LQ
Sbjct: 183 -IAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEE 241
Query: 280 -------TGKMSASDPNSAIYVTDSAKAIKNKINKYAF--------SGGQESVE--LHRK 322
KMS S P SA+++ DS + I+ K+ K AF + + VE + R+
Sbjct: 242 EFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAREVRYNPVLDWVEYIIFRE 300
Query: 323 LGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 376
V P K+ E +K+++ G + ++K +A+ L L+E
Sbjct: 301 EPTEFTVHRPAKFGG--DVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLE 352
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 80.2 bits (198), Expect = 8e-17
Identities = 55/319 (17%), Positives = 113/319 (35%), Gaps = 36/319 (11%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI----QLTDDE 129
+ L K + +Y G + + H+ + VP A +V ++ D+
Sbjct: 25 EKLKEILKERELKIYWGTATTGK-PHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNM 83
Query: 130 KCMWKNLSVEESQRLARENAKDII-ACGFDVTKTFIFSDFDYVGGAFY-KNMVKVAKCVT 187
K W+ +E K ++ + G + K DY Y ++ +++ VT
Sbjct: 84 KAPWEL--LELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVT 141
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQ 246
+ + + +V P + ++Y + + +L+ IDQ
Sbjct: 142 QHDSKKAG----AEVVKQVEHPLLSGLLYPGLQALDEE---------YLKVDAQFGGIDQ 188
Query: 247 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 306
F P +GY K + + P L G KMS+S+ S I + D + +K K+
Sbjct: 189 RKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLK 246
Query: 307 KYAFSGGQES-------VELH-RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGM 358
K G ++ L + + K+ ++K++ A +
Sbjct: 247 KAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTA--YVDLEKDFAAEVV 304
Query: 359 LTGEVKQRLAKVLTELVER 377
G++K + L +L++
Sbjct: 305 HPGDLKNSVEVALNKLLDP 323
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 77.7 bits (192), Expect = 4e-16
Identities = 79/323 (24%), Positives = 131/323 (40%), Gaps = 52/323 (16%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTDD 128
++ E EK Y G PS E +HLGH++ LQ+A F++ +++ L +
Sbjct: 22 ELRQLIETKEKPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEIIVLLADIHAYLNE- 79
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFY-KNMVKVAKCV 186
K + EE +A N K IA G D ++ F+ +Y Y +++K+A+
Sbjct: 80 -----KG-TFEEIAEVADYNKKVFIALGLDESRAKFVLGS-EYQLSRDYVLDVLKMARIT 132
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKD--HLRCLIPCA- 243
T N+ + P V +MIY P L D HL +
Sbjct: 133 TLNRARRSMDEVSR----RKEDPMVSQMIY----------P-LMQALDIAHLGVDLAVGG 177
Query: 244 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 303
IDQ + R+ PR+GY P + + L G KMS+S + I V D + ++
Sbjct: 178 IDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPPEEVER 234
Query: 304 KINKYAFSGGQ----------ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 353
KI K G + L R + V+ K+ + A E + +++
Sbjct: 235 KIRKAYCPAGVVEENPILDIAKYHILPRF--GKIVVERDAKFGGDV--EYASFEELAEDF 290
Query: 354 GAGGMLTGEVKQRLAKVLTELVE 376
+G + ++K +AK L L+E
Sbjct: 291 KSGQLHPLDLKIAVAKYLNMLLE 313
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 72.6 bits (179), Expect = 3e-14
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 16/141 (11%)
Query: 245 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 296
DQ P TR++ R + L P L G KMS S N AI + D
Sbjct: 171 DQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGD 228
Query: 297 SAKAIKNKINK-YAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 355
SA + K+ Y G + + R G + +L F D A ++ +K +Y A
Sbjct: 229 SADEVARKVMGMYTDPGHLRASDPGRVEGNPV-----FTFLDAFDPDPARVQALKDQYRA 283
Query: 356 GGMLTGEVKQRLAKVLTELVE 376
GG+ +VK+ L VL ++
Sbjct: 284 GGLGDVKVKKHLIDVLNGVLA 304
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 68.7 bits (169), Expect = 5e-13
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 15/140 (10%)
Query: 245 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 296
DQ + +TR++A R Y + L P G KMS S N I +
Sbjct: 162 DQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGR--KMSKSYGN-IINLEI 218
Query: 297 SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAG 356
S K ++ I + + + + R N E KY F + E + + +
Sbjct: 219 SEKELEQTILR-MMT---DPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTA 274
Query: 357 GMLTGEVKQRLAKVLTELVE 376
+ + K+ L K + +
Sbjct: 275 SIGCVDCKKLLLKNMKRKLA 294
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 65.7 bits (161), Expect = 4e-12
Identities = 68/317 (21%), Positives = 120/317 (37%), Gaps = 49/317 (15%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTDD 128
+ L K ++ Y G PS + +HLGH + LQ+A F + +++ L
Sbjct: 18 EELREVLKKDEKSAYIGFEPSGK-IHLGHYLQIKKMIDLQNAGFDIIILLADLAAYLNQ- 75
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI-FSDFDYVGGAFYKNMVKVAKCVT 187
K +E +++ N K A G ++ S+F + N+ ++A T
Sbjct: 76 -KGEL-----DEIRKIGDYNKKVFEAMGLK--AKYVYGSEFQL-DKDYTLNVYRLALKTT 126
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKD--HLRCLIPCA-I 244
+ + P V E+IY P + +L + +
Sbjct: 127 LKRARRSMELIARE----DENPKVAEVIY----------P-IMQVNTSHYLGVDVAVGGM 171
Query: 245 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 304
+Q + R++ P+ K I + L GE GKMS+S N I V DS + I+ K
Sbjct: 172 EQRKIHMLARELLPK----KVVCIHNPVLTGLDGE-GKMSSSKGN-FIAVDDSPEEIRAK 225
Query: 305 INK-YAFSGGQES--VELHRK--LGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGML 359
I K Y +G E + K L L + P K+ E ++ + +
Sbjct: 226 IKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGD--LTVNSYEELESLFKNKELH 283
Query: 360 TGEVKQRLAKVLTELVE 376
+K +A+ L +++E
Sbjct: 284 PMYLKNAVAEELIKILE 300
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 61.4 bits (150), Expect = 1e-10
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 245 DQDPYFRMTRDVAPRIGYH------KP-ALIESSF--FPALQGETGKMSASDPNSAIYVT 295
DQ + +TR++A R + +P AL+ P + G KMS S N I +
Sbjct: 150 DQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLL 207
Query: 296 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 355
+ ++I KI + + + E I YLS+F +E +K+EY
Sbjct: 208 EPEESIWQKIQH-LPD---DPQRIRLSDPGDPERTILFTYLSYF-APKDLVEALKEEYRK 262
Query: 356 GGMLTGEVKQRLAKVLTELVE 376
G+ T VK+ L L E +
Sbjct: 263 AGVGTYVVKRILFDHLMEALR 283
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 6e-08
Identities = 49/365 (13%), Positives = 93/365 (25%), Gaps = 116/365 (31%)
Query: 32 KLIDKF--GCQRL----DQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEK 85
K + F C+ L + + D + T H L+ E
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTT-------------HISLDHHSMTLTPDE- 302
Query: 86 FYLYTGRGPSSEALHLGHLVPFMFTKYL----QD----AFKV-PLVIQL----TDDEKCM 132
++L KYL QD P + + D
Sbjct: 303 ----------VKSL---------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 133 WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD-FDYVGGAFYKNMVKVAKCVTYNKV 191
W N + + + II +V + + FD + F + + +
Sbjct: 344 WDNW-----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPS-AHIPT-----IL 391
Query: 192 VGIF--GFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHL---FSGKD------HLRCL- 239
+ + D + V+ ++ K S P + K H +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 240 ---IPCAIDQ--------DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 288
IP D D YF IG+H E +
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYF------YSHIGHH--------LKNIEHPERMTLF---- 493
Query: 289 NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEH 348
+++ + ++ KI + + L N + Y + ++D + E
Sbjct: 494 -RMVFLDF--RFLEQKIRHDSTAWNASGSIL------NTLQQLK-FYKPYICDNDPKYER 543
Query: 349 IKKEY 353
+
Sbjct: 544 LVNAI 548
Score = 38.7 bits (89), Expect = 0.004
Identities = 64/499 (12%), Positives = 140/499 (28%), Gaps = 170/499 (34%)
Query: 25 SGKIDY----------DKLIDKFGCQRLDQSL------------------VDRVQRLTGR 56
+G+ Y D +D F C+ + V RL
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW- 69
Query: 57 PPHVFLRRGVFFAHRDLNDILDA-YEKGEKFYLYTG-----RGPS------SEALHLGHL 104
L + + + ++L Y+ +L + R PS E +
Sbjct: 70 ---TLLSKQEEMVQKFVEEVLRINYK-----FLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 105 VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEES-----------QRLARENAKDII 153
+F KY + ++ ++L + + L ++ +A +
Sbjct: 122 DNQVFAKY--NVSRLQPYLKLR---QAL-LELRPAKNVLIDGVLGSGKTWVALDVCLS-- 173
Query: 154 ACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQE 213
+ V F F+ + + C + V+ + +Q+
Sbjct: 174 ---YKVQCKMDF-------KIFW---LNLKNCNSPETVLEM----------------LQK 204
Query: 214 MIYKAVPSF------PSSFPH-----------LFSGKDHLRCLIPCAID--QDP----YF 250
++Y+ P++ S+ L K + CL+ + Q+ F
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAF 262
Query: 251 ----RM---TRD--VAPRIG---YHKPALIESS--FFP----ALQGETGKMSASD-PNSA 291
++ TR V + +L S P +L + D P
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 292 I------------YVTDSAKAIKN--KINKYAFSGGQE-SVE-----LHRKLGANL---- 327
+ + D N +N + E S+ +RK+ L
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 328 -EVDIPVKYLSFFLEDD--AELEHIKKEYGAGGMLTGEVKQRLAKV--LTELVERHQVAR 382
IP LS D +++ + + ++ + K+ + + ++
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 383 AAVTDEMVDAFMAVRPLPN 401
A+ +VD + + +
Sbjct: 443 YALHRSIVDHYNIPKTFDS 461
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 51.4 bits (124), Expect = 2e-07
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 19/141 (13%)
Query: 245 DQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPNSAIYVT 295
DQ + + RD+A ++ P A + E + G KMS S N I +
Sbjct: 148 DQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGA--KMSKSYQN-TIDIF 204
Query: 296 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 355
S K +K +I+ + + N+ K FL D++ + ++ Y
Sbjct: 205 SSEKTLKKQISS-IVTDSTALEDPKDHENCNI-----FKIAKLFL-DESGQKELQIRYEK 257
Query: 356 GGMLTGEVKQRLAKVLTELVE 376
GG G K L +++ +
Sbjct: 258 GGEGYGHFKIYLNELVNAYFK 278
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 8e-07
Identities = 63/423 (14%), Positives = 116/423 (27%), Gaps = 136/423 (32%)
Query: 20 WEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGR-----PPHVFLRRGVFFAHRDLN 74
V ++ +L ++F ++ L + + P + + F +
Sbjct: 20 LLVPTASFFIASQLQEQF-----NKILPEPTEGFAADDEPTTPAELVGK---FLGY---- 67
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQD----AFKVPLVIQLTDDEK 130
+ E + G + L+L L F YL+ A L L +++
Sbjct: 68 -VSSLVEPSKV-------GQFDQVLNLC-LTEF-ENCYLEGNDIHALAAKL---LQENDT 114
Query: 131 CMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
+ K K++I A ++ V +
Sbjct: 115 TLVK--------------TKELIKNYITARIMAKRPFDKKSNSALFRA-VGEGN----AQ 155
Query: 191 VVGIFGFTGEDHIGKVSFPPVQEM--IYKAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 248
+V IFG G+ G +E+ +Y+ + + L LI +D +
Sbjct: 156 LVAIFG--GQ---GNTD-DYFEELRDLYQTYHVLVGDL--IKFSAETLSELIRTTLDAEK 207
Query: 249 YFRMTRDV---------APRIGY--HKPA---LIE------------------SSFFPAL 276
F ++ P Y P LI L
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 277 QGETGK---------MSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANL 327
+G TG ++ +D + + KAI F G E +
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFF-VSVRKAI-----TVLFFIGVRCYEAY------- 314
Query: 328 EVDIPVKYLSFFLEDDAELEHIKKEYGAGG---ML--TG----EVKQRLAKVLTELVERH 378
P L + +D+ E G ML + +V+ + K + L
Sbjct: 315 ----PNTSLPPSILEDSL------ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 379 QVA 381
QV
Sbjct: 365 QVE 367
Score = 47.0 bits (111), Expect = 9e-06
Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 51/194 (26%)
Query: 192 VGIF-GFTGEDHIGKVSFPPVQEMIYKAVPSFPSSFPHLFSGKD-HLRCLIPCAIDQDPY 249
VG F G+ + +++ + F + + G D H L
Sbjct: 61 VGKFLGYV-SSLVEPSKVGQFDQVLNLCLTEFENCY---LEGNDIH--ALA--------- 105
Query: 250 FRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYA 309
++ ++ + K LI++ + A + NSA++ + ++ A
Sbjct: 106 AKLLQENDTTLVKTK-ELIKN-YITARI-MAKRPFDKKSNSALF--RAVGEGNAQL--VA 158
Query: 310 -FSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLA 368
F GGQ G + Y EL + + Y L G++ + A
Sbjct: 159 IF-GGQ---------GNTDD------YFE-------ELRDLYQTYHV---LVGDLIKFSA 192
Query: 369 KVLTELVERHQVAR 382
+ L+EL+ A
Sbjct: 193 ETLSELIRTTLDAE 206
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 48.0 bits (115), Expect = 3e-06
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 276 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEV 329
LQ T KMS SD N + I + + K++ KI + + ++ +K G NL +
Sbjct: 201 LQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNL-L 259
Query: 330 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 376
DI LS + ++ ++ G + G +K +A ++ ++
Sbjct: 260 DI----LSGV--TGQSIPELEAQF--TGQMYGHLKGAVADAVSGMLS 298
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 47.6 bits (114), Expect = 4e-06
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 30/158 (18%)
Query: 239 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFP--------------ALQGETGKMS 284
+P DQ + + RD+A R ++ E F +LQ T KMS
Sbjct: 146 QVPVGSDQKQHLELARDIATR--FNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMS 203
Query: 285 ASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEVDIPVKYLSF 338
SD N + I + + K+I KINK A + + + ++ K G NL + + S
Sbjct: 204 KSDDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVENKAGIANL-MGL----YSA 258
Query: 339 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 376
I+ +Y AG + G K+ + + + ++E
Sbjct: 259 A--TGKTFAEIEAQY-AGVEMYGPFKKDVGEAVVAMLE 293
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 47.7 bits (114), Expect = 4e-06
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 276 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 330
L KMS SDPN + I + D K ++ KI A S G + K G NL +
Sbjct: 220 LNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVKFDKENKPGVSNL-LT 277
Query: 331 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 376
I S + +E ++ +Y G GE K LA+V+ ++
Sbjct: 278 I----YSIL--GNTTIEELEAKY--EGKGYGEFKGDLAEVVVNALK 315
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 47.1 bits (113), Expect = 4e-06
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 276 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 330
L T KMS SDPN + I + D AK I+ KI A S G + K G NL ++
Sbjct: 186 LVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIRYDKEAKPGISNL-LN 243
Query: 331 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 376
I S +E ++++Y G G K LA+V+ E +
Sbjct: 244 I----YSTL--SGQSIEELERQY--EGKGYGVFKADLAQVVIETLR 281
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 46.1 bits (110), Expect = 1e-05
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 20/113 (17%)
Query: 276 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 330
L T KMS S N IY+ D + + KI + A S + + G N+ +
Sbjct: 196 LFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQ-ATTDSFNKIRFASKTQPGVTNM-LT 253
Query: 331 IPVKYLSFF-------LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 376
I L + ++ + ++K L + L+
Sbjct: 254 I----LKALLKEPVNQSLTNQLGNDLEAYF--STKSYLDLKNALTEATVNLLV 300
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group
I intron; HET: TYR; 1.95A {Neurospora crassa} PDB:
2rkj_A
Length = 392
Score = 43.9 bits (104), Expect = 6e-05
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG + + + + Y G P++ +LH+GHL+P M ++
Sbjct: 43 RGYVKDTAGTKEHIAELMRTRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLE 95
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; HET: AZY; 1.80A {Escherichia
coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Length = 322
Score = 42.2 bits (100), Expect = 2e-04
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ D + + +G L G P++++LHLGHLVP + K Q A
Sbjct: 13 RGLVAQVTDEEALAERLAQG-PIALVCGFDPTADSLHLGHLVPLLCLKRFQQA 64
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 42.4 bits (100), Expect = 2e-04
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
L+RG + ++L ++G + G P+ LHLGH V + Q+
Sbjct: 15 LKRGAEEIVPE-EELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQEL 68
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase,
protein-substrate complex, ATP-BI ligase, mitochondrion,
nucleotide-binding, protein biosynth; HET: YSA; 2.20A
{Homo sapiens} PDB: 3zxi_A*
Length = 356
Score = 41.9 bits (99), Expect = 3e-04
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
+L ++ D +Y G P++++LH+GHL+ + +LQ A
Sbjct: 33 ELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRA 77
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA
synthetase, tyrrs, ligase, tyrosine, RNA-binding,
ATP-binding; 2.9A {Mycobacterium tuberculosis}
Length = 432
Score = 41.8 bits (99), Expect = 3e-04
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ DL+ + ++G +Y G P++ +LH GHLVP + + Q A
Sbjct: 12 RGLIAQSTDLDTLAAEAQRG-PMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRA 63
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design,
ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP:
c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Length = 420
Score = 41.0 bits (97), Expect = 4e-04
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ + D I D K + LY G P++++LH+GHL+PF+ + Q+
Sbjct: 12 RGLIYQQTDEQGIEDLLNKE-QVTLYCGADPTADSLHIGHLLPFLTLRRFQEH 63
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E*
1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Length = 419
Score = 41.0 bits (97), Expect = 5e-04
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ D + + + + LY G P++++LH+GHL + + Q A
Sbjct: 10 RGLVNQTTDEDGLRKLLNEE-RVTLYCGFDPTADSLHIGHLATILTMRRFQQA 61
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.81
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 13/37 (35%)
Query: 282 KMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVE 318
K+ AS +Y DSA A+ I A ++E
Sbjct: 24 KLQAS---LKLYADDSAPAL--AIK--A------TME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.1
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 23/77 (29%)
Query: 1 MDKNEEKQREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHV 60
+D + +E RE+ K ++++ ++ +Q V++ +
Sbjct: 101 LDAASKVMEQEWREKA--------------KKDLEEWNQRQSEQ--VEKNKINNRIADKA 144
Query: 61 FLRRGVFFAHRDLNDIL 77
F D DI+
Sbjct: 145 FY------QQPD-ADII 154
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 28.9 bits (65), Expect = 2.5
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 286 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGAN 326
+ I+ + I + A + E++E R GA+
Sbjct: 80 ESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGAD 120
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel, TIM barrel,
oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP:
c.1.16.3
Length = 349
Score = 28.1 bits (63), Expect = 5.3
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 367 LAKVLTELV--ERHQVARAAVTDEMVDAFMAV 396
A+ + E + A V ++M++AF
Sbjct: 270 KAEQIAEAIGKGDFGTAIGLVDEDMIEAFSIA 301
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.1.16.3
Length = 321
Score = 27.7 bits (62), Expect = 8.0
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 16/82 (19%)
Query: 328 EVDIPVKYLSFFLEDDAE--LEHIKKE--YGAGGM---------LTGEVKQRLAKVLTEL 374
++D+ Y +++DA K + A G L + ++ ++L +
Sbjct: 198 DIDVAA-YTCCSIDEDAAAAANAAKIVVAFIAAGSPPPVFERHGLPADTGKKFGELLGK- 255
Query: 375 VERHQVARAAVTDEMVDAFMAV 396
A AV D +++AF V
Sbjct: 256 -GDFGGAIGAVDDALMEAFSVV 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.410
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,394,602
Number of extensions: 405132
Number of successful extensions: 1266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1176
Number of HSP's successfully gapped: 57
Length of query: 404
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 308
Effective length of database: 4,021,377
Effective search space: 1238584116
Effective search space used: 1238584116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)