Query 015583
Match_columns 404
No_of_seqs 117 out of 148
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 07:40:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11891 DUF3411: Domain of un 100.0 4E-74 8.7E-79 527.4 13.8 179 180-359 1-180 (180)
2 PRK05325 hypothetical protein; 91.2 0.42 9.1E-06 50.1 6.0 78 56-138 37-118 (401)
3 TIGR02877 spore_yhbH sporulati 91.2 0.45 9.8E-06 49.4 6.2 77 57-138 50-130 (371)
4 PLN03138 Protein TOC75; Provis 91.0 0.53 1.1E-05 53.1 7.0 22 2-23 5-26 (796)
5 PF04285 DUF444: Protein of un 86.2 1.5 3.3E-05 46.3 6.1 25 104-132 105-129 (421)
6 COG1512 Beta-propeller domains 76.1 2.6 5.6E-05 42.2 3.4 14 81-94 238-251 (271)
7 KOG3973 Uncharacterized conser 72.8 5.2 0.00011 41.9 4.6 10 71-80 326-335 (465)
8 COG2718 Uncharacterized conser 72.2 7.8 0.00017 41.0 5.8 36 91-130 92-127 (423)
9 COG3028 Uncharacterized protei 66.0 12 0.00025 35.8 5.0 78 108-185 15-129 (187)
10 PHA00370 III attachment protei 63.5 9.8 0.00021 38.3 4.3 9 264-272 243-251 (297)
11 KOG0921 Dosage compensation co 63.4 7.2 0.00016 45.4 3.7 9 71-79 1213-1221(1282)
12 PF02979 NHase_alpha: Nitrile 63.2 5.2 0.00011 38.3 2.2 46 145-190 17-68 (188)
13 PF04285 DUF444: Protein of un 61.3 11 0.00025 39.9 4.6 12 58-69 52-63 (421)
14 PF02957 TT_ORF2: TT viral ORF 59.6 9.8 0.00021 33.1 3.2 7 123-129 111-117 (122)
15 PF02084 Bindin: Bindin; Inte 57.4 27 0.00059 34.6 6.1 15 129-143 112-126 (238)
16 PTZ00146 fibrillarin; Provisio 55.2 15 0.00032 37.3 4.0 37 127-165 107-143 (293)
17 PRK05255 hypothetical protein; 50.6 63 0.0014 30.5 7.1 57 135-191 47-126 (171)
18 PTZ00146 fibrillarin; Provisio 48.1 22 0.00047 36.1 3.9 8 289-296 226-233 (293)
19 PF04360 Serglycin: Serglycin 48.0 6.7 0.00015 36.3 0.3 26 18-43 4-29 (150)
20 PLN03134 glycine-rich RNA-bind 46.4 22 0.00048 31.8 3.3 8 61-68 100-107 (144)
21 KOG3074 Transcriptional regula 42.0 16 0.00035 36.4 1.9 8 118-125 47-54 (263)
22 PF07631 PSD4: Protein of unkn 37.0 62 0.0014 28.8 4.7 40 135-196 16-57 (128)
23 KOG0105 Alternative splicing f 36.5 45 0.00097 32.7 3.9 14 118-131 127-140 (241)
24 PLN02705 beta-amylase 34.0 56 0.0012 36.7 4.6 13 279-291 303-315 (681)
25 PF07096 DUF1358: Protein of u 29.5 56 0.0012 29.6 3.1 53 293-347 31-92 (124)
26 KOG4552 Vitamin-D-receptor int 29.4 64 0.0014 32.0 3.7 42 46-90 149-190 (272)
27 TIGR01323 nitrile_alph nitrile 28.8 52 0.0011 31.6 2.9 44 145-188 11-60 (185)
28 KOG0921 Dosage compensation co 28.8 68 0.0015 37.9 4.3 9 26-34 1139-1147(1282)
29 KOG4096 Uncharacterized conser 28.6 11 0.00023 31.4 -1.4 21 332-352 51-71 (75)
30 PF08671 SinI: Anti-repressor 28.6 61 0.0013 22.6 2.5 21 141-162 9-29 (30)
31 PRK11634 ATP-dependent RNA hel 28.2 1E+02 0.0022 34.1 5.5 6 62-67 550-555 (629)
32 COG4278 Uncharacterized conser 27.8 67 0.0014 32.3 3.6 10 76-85 228-237 (269)
33 KOG3158 HSP90 co-chaperone p23 27.0 62 0.0013 31.0 3.1 10 109-118 165-174 (180)
34 KOG1456 Heterogeneous nuclear 26.7 48 0.001 35.4 2.5 26 138-163 45-79 (494)
35 PF11318 DUF3120: Protein of u 25.1 42 0.00091 32.7 1.6 45 285-339 96-145 (203)
36 PF15059 Speriolin_C: Sperioli 24.6 43 0.00094 31.1 1.6 67 131-197 26-117 (146)
37 PF10247 Romo1: Reactive mitoc 24.5 59 0.0013 26.5 2.1 51 297-351 15-66 (67)
38 KOG1596 Fibrillarin and relate 24.3 85 0.0018 32.1 3.6 18 216-233 134-151 (317)
39 PF05387 Chorion_3: Chorion fa 23.6 88 0.0019 31.5 3.5 16 74-89 17-32 (277)
40 PRK11511 DNA-binding transcrip 23.2 3E+02 0.0065 23.7 6.4 78 121-200 9-88 (127)
41 KOG3074 Transcriptional regula 23.1 51 0.0011 33.1 1.8 6 158-163 38-43 (263)
42 TIGR03795 chp_BMA0021 conserve 22.7 53 0.0011 29.3 1.7 20 168-187 18-39 (114)
43 COG3521 Predicted component of 21.0 68 0.0015 30.1 2.1 29 2-43 18-46 (159)
44 PF04858 TH1: TH1 protein; In 21.0 1.6E+02 0.0034 32.8 5.2 49 113-162 24-80 (584)
45 PRK10590 ATP-dependent RNA hel 20.3 1E+02 0.0022 32.1 3.5 34 86-119 389-422 (456)
No 1
>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.
Probab=100.00 E-value=4e-74 Score=527.37 Aligned_cols=179 Identities=47% Similarity=0.891 Sum_probs=172.1
Q ss_pred hhhhcCchhhHHHHHHHHhhhhhhhhHHHhhcCcchhhhHHHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCchhhhH
Q 015583 180 DRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRI 259 (404)
Q Consensus 180 ~RlLADP~FlfKl~iE~~I~i~~~~~aE~~~R~e~F~~ElDfV~ad~v~g~v~df~lVwLlAPt~s~g~~~~s~g~~~~l 259 (404)
|||||||+|||||++||+||++|+++|||++|||+||+|||||++|+++++|+||+||||||||+++++++.+.. .+.+
T Consensus 1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~lv~llAPt~s~~~~~~~~~-~~~~ 79 (180)
T PF11891_consen 1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFALVWLLAPTRSFGSPAASSP-GGGL 79 (180)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhccchHhhCccccccc-chHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999998775332 2689
Q ss_pred HhHhccCCCCccccCCCCCcCchhhhHHHHhhcceeeehhhhhHhhhhHHHHHHHHHHhhhcCCC-CCCCCCChhhhhhH
Q 015583 260 QNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKS-EDDIPVPPLVKSAA 338 (404)
Q Consensus 260 ~~~~~~lP~n~Fq~~~pG~~fsl~qR~~a~~~KG~~l~~VGf~aGlvG~glsN~L~~~Rr~~~~~-~~~~~~PPv~~sAl 338 (404)
++++++||+||||+++||++||++||++||+|||++|++|||+||++|+++||+|+++||+++|+ |.++++|||++||+
T Consensus 80 ~~~~~~~P~n~Fq~~~~g~~fsl~qR~~~~~~kg~~l~~VG~~ag~vg~~lsn~L~~~rk~~~~~~e~~~~~ppv~~ta~ 159 (180)
T PF11891_consen 80 QKFLGSLPNNAFQKGYPGRSFSLAQRIGAFVYKGAKLAAVGFIAGLVGTGLSNALIAARKKVDPSFEPSVPVPPVLKTAL 159 (180)
T ss_pred HHHHHhChHHHhccCCCCCcccHHHHHHHHHHcchHhhhhHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985 78999999999999
Q ss_pred HHHHHHhhchhhHHHHHHhHH
Q 015583 339 LWGVFLAVSSNIRYQIVNGLE 359 (404)
Q Consensus 339 ~wg~fMGvSSNlRYQil~GlE 359 (404)
+||+|||+|||+|||+|||+|
T Consensus 160 ~~g~fmGvSsNlRYQil~GiE 180 (180)
T PF11891_consen 160 GWGAFMGVSSNLRYQILNGIE 180 (180)
T ss_pred HHHHHHhhhHhHHHHHHcCCC
Confidence 999999999999999999987
No 2
>PRK05325 hypothetical protein; Provisional
Probab=91.16 E-value=0.42 Score=50.11 Aligned_cols=78 Identities=32% Similarity=0.410 Sum_probs=36.2
Q ss_pred CCcccccCCCccccCCCCcccccCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCccCHHHHHHHHH
Q 015583 56 TPKTIEIPGKITEESADCEPRIHSSGGDGGA----GDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIE 131 (404)
Q Consensus 56 ~p~~~~i~gr~~~~~~~~~~~~~s~~g~g~~----g~~~~~~g~~~g~~ggg~~~g~~~~~~~~e~g~~l~~~~Vl~~a~ 131 (404)
+.+.++|.+-+|+.-.|..+|-....|.|.. |+--+-..|+|+|+|.|+++|+|+|+-+ -=++.||.++.--
T Consensus 37 ~~v~IPi~~i~Ep~F~~g~~~~~~~Vg~Gn~~~~~GD~i~rp~g~g~G~G~~~~~geGeD~fe----~els~eE~~~~lf 112 (401)
T PRK05325 37 EVVSIPIRDIDEPKFRYGRGGKREGVGPGNGEFVVGDRIGRPQGGGGGGGQGGGDGEGEDYFE----FEISLEELLDLLF 112 (401)
T ss_pred ceEEecCCCCccceEEeCCCCCCCccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcceEE----EEecHHHHHHHHH
Confidence 3577777777777666555422222222222 3332222222222223333333444443 3477888777665
Q ss_pred HcCCCCh
Q 015583 132 LKGVGLP 138 (404)
Q Consensus 132 ~~~~sLP 138 (404)
... .||
T Consensus 113 EdL-eLP 118 (401)
T PRK05325 113 EDL-ELP 118 (401)
T ss_pred hhc-CCC
Confidence 433 344
No 3
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=91.16 E-value=0.45 Score=49.44 Aligned_cols=77 Identities=29% Similarity=0.416 Sum_probs=36.1
Q ss_pred CcccccCCCccccCC---CCcccccCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCcccccCCccCHHHHHHHHHH
Q 015583 57 PKTIEIPGKITEESA---DCEPRIHSSGGDGGAGDSPGGG-GGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIEL 132 (404)
Q Consensus 57 p~~~~i~gr~~~~~~---~~~~~~~s~~g~g~~g~~~~~~-g~~~g~~ggg~~~g~~~~~~~~e~g~~l~~~~Vl~~a~~ 132 (404)
.+.++|.+=+|+.-. +.+.+.+.+.|+---|+-=+-. +|+|||+|.|.|+|+|+|+=| -=++.||.++.--.
T Consensus 50 ~V~IPir~l~Ep~F~~g~~~~~~Vg~Gng~~~~GD~i~rp~~~~ggg~g~gag~geGed~fe----~e~s~eE~~~~lfE 125 (371)
T TIGR02877 50 KIKVPIRGLKEYRFRYDWNKQKRVGQGDGNEKVGDVIGRERAGGEGGGGKGAGDQEGEDYYE----TEVTLEELFELLFE 125 (371)
T ss_pred eEEccCCCCccceEEeCCCCCCeecCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcceEE----EEecHHHHHHHHHh
Confidence 477777777776443 3344445433332224331111 111112223344444554433 34778888877654
Q ss_pred cCCCCh
Q 015583 133 KGVGLP 138 (404)
Q Consensus 133 ~~~sLP 138 (404)
-. .||
T Consensus 126 dL-eLP 130 (371)
T TIGR02877 126 DL-ELP 130 (371)
T ss_pred hc-cCC
Confidence 43 354
No 4
>PLN03138 Protein TOC75; Provisional
Probab=91.00 E-value=0.53 Score=53.14 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=16.5
Q ss_pred CcccccccCCCCCCCCCCCCcc
Q 015583 2 SACSSTFRLPNLPNISPQNHNI 23 (404)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (404)
++|.+.++-++++.-.||+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (796)
T PLN03138 5 STMVSAAASTSLSSSRPQLSSF 26 (796)
T ss_pred cccceeccCCCccCCCcccccc
Confidence 5788888888888877777543
No 5
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=86.22 E-value=1.5 Score=46.33 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=13.4
Q ss_pred CCCCCCCCCcccccCCccCHHHHHHHHHH
Q 015583 104 GGDGEGNDGEEKEFGPILKFEEVMKEIEL 132 (404)
Q Consensus 104 ~~~g~~~~~~~~e~g~~l~~~~Vl~~a~~ 132 (404)
.|+|+|+|+-+ --++.||.++.--.
T Consensus 105 ag~geGeD~fe----~els~eE~~~llfE 129 (421)
T PF04285_consen 105 AGDGEGEDDFE----FELSREEFLDLLFE 129 (421)
T ss_pred CCCCCCCCeEE----EEEEHHHHHHHhHH
Confidence 34444544333 45677777665443
No 6
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=76.09 E-value=2.6 Score=42.16 Aligned_cols=14 Identities=50% Similarity=1.025 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCCC
Q 015583 81 GGDGGAGDSPGGGG 94 (404)
Q Consensus 81 ~g~g~~g~~~~~~g 94 (404)
+|.|++|+++|+++
T Consensus 238 ~g~g~~g~~gg~~~ 251 (271)
T COG1512 238 SGSGGSGGSGGGSS 251 (271)
T ss_pred CCCCCCCCCCCCCC
Confidence 45555555555554
No 7
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=72.76 E-value=5.2 Score=41.95 Aligned_cols=10 Identities=10% Similarity=-0.107 Sum_probs=4.2
Q ss_pred CCCcccccCC
Q 015583 71 ADCEPRIHSS 80 (404)
Q Consensus 71 ~~~~~~~~s~ 80 (404)
.|..+.-|+.
T Consensus 326 q~~~~~~ggr 335 (465)
T KOG3973|consen 326 QHTFDRQGGR 335 (465)
T ss_pred cCCCCCCCCc
Confidence 3444444443
No 8
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=72.17 E-value=7.8 Score=40.99 Aligned_cols=36 Identities=47% Similarity=0.836 Sum_probs=16.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccCCccCHHHHHHHH
Q 015583 91 GGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEI 130 (404)
Q Consensus 91 ~~~g~~~g~~ggg~~~g~~~~~~~~e~g~~l~~~~Vl~~a 130 (404)
+||||+|.|.|+|.|+|++||+ |=--++-+|++..-
T Consensus 92 ~~ggg~g~g~g~~ag~~egED~----F~~~is~~e~~dll 127 (423)
T COG2718 92 QGGGGGGSGKGQAAGDGEGEDE----FVFQISREEVLDLL 127 (423)
T ss_pred CCCCCCCCCCCCccCCCCCcch----hheeeehhHHHHHH
Confidence 3333333333344444444443 33445566666544
No 9
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.97 E-value=12 Score=35.84 Aligned_cols=78 Identities=23% Similarity=0.262 Sum_probs=41.1
Q ss_pred CCCCCcccccCCccCH-----HHHHHHHHHcCCC----------ChHHHHHHHHHcC-CCHH------------------
Q 015583 108 EGNDGEEKEFGPILKF-----EEVMKEIELKGVG----------LPDDMMEAAKTVG-IRKM------------------ 153 (404)
Q Consensus 108 ~~~~~~~~e~g~~l~~-----~~Vl~~a~~~~~s----------LP~Dl~~A~~~gg-i~~~------------------ 153 (404)
+++++||+||=..-+- .+.|+--+....+ ||.||++|++... |.++
T Consensus 15 ~~~~ded~e~iwvSKSqiKRd~~aLq~LGe~L~~L~~~~L~KiPL~E~L~~Ai~~aqri~~~~arrRQlQyIGKlmR~~D 94 (187)
T COG3028 15 DDEEDEDDEIIWVSKSQIKRDAEALQDLGEELVDLTKAALAKIPLDEDLLEAIELAQRIKSEIARRRQLQYIGKLMRDRD 94 (187)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5666677777665443 2333333333333 5889999886542 3333
Q ss_pred --HHHHHHhhcCCcch-HHHHHHhhhhhhhhhhcC
Q 015583 154 --FLLRYLDLQGSVWP-LGFLMRYCFMLRDRMLAD 185 (404)
Q Consensus 154 --~L~rfl~l~~~~~~-l~~L~r~f~gfR~RlLAD 185 (404)
-++.+||=-.+..- --.+.++.-.||+||+||
T Consensus 95 vepI~~~Ldkl~~~~~q~~a~lHklE~~RdrLia~ 129 (187)
T COG3028 95 VEPIRAALDKLRNRHNQQVALLHKLEQLRDRLIAE 129 (187)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 33344433222210 023445567788888877
No 10
>PHA00370 III attachment protein
Probab=63.45 E-value=9.8 Score=38.35 Aligned_cols=9 Identities=22% Similarity=0.209 Sum_probs=4.4
Q ss_pred ccCCCCccc
Q 015583 264 GSLPSSVFE 272 (404)
Q Consensus 264 ~~lP~n~Fq 272 (404)
..||+-+|-
T Consensus 243 n~C~~FV~~ 251 (297)
T PHA00370 243 HGCTPFVFA 251 (297)
T ss_pred CCCCcceee
Confidence 345555553
No 11
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=63.44 E-value=7.2 Score=45.39 Aligned_cols=9 Identities=0% Similarity=0.050 Sum_probs=4.0
Q ss_pred CCCcccccC
Q 015583 71 ADCEPRIHS 79 (404)
Q Consensus 71 ~~~~~~~~s 79 (404)
+..+++|+-
T Consensus 1213 ~~~~~~~Ga 1221 (1282)
T KOG0921|consen 1213 PSARANYGA 1221 (1282)
T ss_pred CCCCCCccc
Confidence 344444443
No 12
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=63.16 E-value=5.2 Score=38.32 Aligned_cols=46 Identities=22% Similarity=0.171 Sum_probs=31.0
Q ss_pred HHHcCCCHHHHHHHHhhcCCc-chH---HHHHHhh--hhhhhhhhcCchhhH
Q 015583 145 AKTVGIRKMFLLRYLDLQGSV-WPL---GFLMRYC--FMLRDRMLADPSFLF 190 (404)
Q Consensus 145 ~~~ggi~~~~L~rfl~l~~~~-~~l---~~L~r~f--~gfR~RlLADP~Flf 190 (404)
++.|.|+++.+.++.+...+. .|. +-+-|.+ ++||+||||||.=..
T Consensus 17 ~ekg~~~~~~~~~~~~~~~~~~~P~~GarvVArAW~Dp~FK~rLLaD~~aA~ 68 (188)
T PF02979_consen 17 IEKGLITPAEVDRIIETYESRVGPRNGARVVARAWTDPAFKARLLADPTAAI 68 (188)
T ss_dssp HHTTSS-HHHHHHHHHHHHHTSSHHHHHHHHHHHHH-HHHHHHHHHSHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCccccceeehhhhCCHHHHHHHHHCHHHHH
Confidence 456777999999888876543 232 4444545 999999999986443
No 13
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=61.34 E-value=11 Score=39.94 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=6.4
Q ss_pred cccccCCCcccc
Q 015583 58 KTIEIPGKITEE 69 (404)
Q Consensus 58 ~~~~i~gr~~~~ 69 (404)
+.++|.+=+++.
T Consensus 52 V~IP~r~l~Ep~ 63 (421)
T PF04285_consen 52 VSIPIRGLEEPR 63 (421)
T ss_pred EeecCCCCCCCc
Confidence 555555555553
No 14
>PF02957 TT_ORF2: TT viral ORF2; InterPro: IPR004118 This entry represents the Gyroviral VP2 protein and TT viral ORF2. Torque teno virus (TTV) is a nonenveloped and single-stranded DNA virus that was initially isolated from a Japanese patient with hepatitis of unknown aetiology, and which has since been found to infect both healthy and diseased individuals []. Numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF2 is a 150 residue protein of unknown function. Gyroviruses are small circular single stranded viruses, such as the Chicken anaemia virus. The VP2 protein contains a set of conserved cysteine and histidine residues suggesting a zinc binding domain. VP2 may act as a scaffold protein in virion assembly and may also play a role in intracellular signaling during viral replication.
Probab=59.58 E-value=9.8 Score=33.05 Aligned_cols=7 Identities=14% Similarity=0.539 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 015583 123 FEEVMKE 129 (404)
Q Consensus 123 ~~~Vl~~ 129 (404)
.|+++++
T Consensus 111 ld~L~aa 117 (122)
T PF02957_consen 111 LDELFAA 117 (122)
T ss_pred HHHHhhh
Confidence 3444433
No 15
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=57.39 E-value=27 Score=34.57 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=8.5
Q ss_pred HHHHcCCCChHHHHH
Q 015583 129 EIELKGVGLPDDMME 143 (404)
Q Consensus 129 ~a~~~~~sLP~Dl~~ 143 (404)
-.++|..+||-|+-+
T Consensus 112 vLgaTKiDLPVDIND 126 (238)
T PF02084_consen 112 VLGATKIDLPVDIND 126 (238)
T ss_pred HhcccccccccccCC
Confidence 344566666666544
No 16
>PTZ00146 fibrillarin; Provisional
Probab=55.16 E-value=15 Score=37.28 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=16.1
Q ss_pred HHHHHHcCCCChHHHHHHHHHcCCCHHHHHHHHhhcCCc
Q 015583 127 MKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSV 165 (404)
Q Consensus 127 l~~a~~~~~sLP~Dl~~A~~~ggi~~~~L~rfl~l~~~~ 165 (404)
.+.|.-..+.|-+-+...++...|.+- .+.|||=+.+
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG--~~VLDLGaG~ 143 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPG--SKVLYLGAAS 143 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCC--CEEEEeCCcC
Confidence 344544455444444333333333222 2345555554
No 17
>PRK05255 hypothetical protein; Provisional
Probab=50.58 E-value=63 Score=30.53 Aligned_cols=57 Identities=21% Similarity=0.105 Sum_probs=32.6
Q ss_pred CCChHHHHHHHHHcC-C--------------------CHHHHHHHHhhcCCcchH-HHHHHhhhhhhhhhhc-CchhhHH
Q 015583 135 VGLPDDMMEAAKTVG-I--------------------RKMFLLRYLDLQGSVWPL-GFLMRYCFMLRDRMLA-DPSFLFK 191 (404)
Q Consensus 135 ~sLP~Dl~~A~~~gg-i--------------------~~~~L~rfl~l~~~~~~l-~~L~r~f~gfR~RlLA-DP~FlfK 191 (404)
..||.+|.+|+.... | ..+.++.+++-.....-. ....+..-.||+||++ |+.-+..
T Consensus 47 lpL~e~L~~Ai~ea~ri~~~eA~RRqlqyIGKLmR~~d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~~~d~al~e 126 (171)
T PRK05255 47 LPLDEDLRDAILEAQRITSHEARRRQLQYIGKLMRNEDVEPIRAALDKLKNKHNQETARFHKLERWRDRLLAEGDDALTE 126 (171)
T ss_pred CCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 346778888875543 3 334455555554443211 2334556789999999 5544433
No 18
>PTZ00146 fibrillarin; Provisional
Probab=48.10 E-value=22 Score=36.08 Aligned_cols=8 Identities=13% Similarity=0.513 Sum_probs=3.1
Q ss_pred Hhhcceee
Q 015583 289 YFYKGVLY 296 (404)
Q Consensus 289 ~~~KG~~l 296 (404)
++.+|..|
T Consensus 226 ~LKpGG~~ 233 (293)
T PTZ00146 226 FLKNGGHF 233 (293)
T ss_pred hccCCCEE
Confidence 33334333
No 19
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=48.03 E-value=6.7 Score=36.26 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=18.9
Q ss_pred CCCCccccceeeeeccccccccCcch
Q 015583 18 PQNHNIVMPTTVFLSLRHSTATNPAL 43 (404)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 43 (404)
+++..||+-..+-|-|-+|.|--+.+
T Consensus 4 ~~~~rl~LaLalil~l~ssvqG~P~r 29 (150)
T PF04360_consen 4 LQCSRLVLALALILVLDSSVQGAPAR 29 (150)
T ss_pred cccchhHHHHHHHHHhccccccCcch
Confidence 45666777777777777887777776
No 20
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=46.42 E-value=22 Score=31.80 Aligned_cols=8 Identities=25% Similarity=0.518 Sum_probs=4.0
Q ss_pred ccCCCccc
Q 015583 61 EIPGKITE 68 (404)
Q Consensus 61 ~i~gr~~~ 68 (404)
+|.||.+.
T Consensus 100 ~i~Gr~l~ 107 (144)
T PLN03134 100 ELNGRHIR 107 (144)
T ss_pred EECCEEEE
Confidence 45555444
No 21
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=41.98 E-value=16 Score=36.41 Aligned_cols=8 Identities=50% Similarity=0.771 Sum_probs=3.2
Q ss_pred CCccCHHH
Q 015583 118 GPILKFEE 125 (404)
Q Consensus 118 g~~l~~~~ 125 (404)
|+.|+.+|
T Consensus 47 GRflKIaE 54 (263)
T KOG3074|consen 47 GRFLKIAE 54 (263)
T ss_pred cceEEEEE
Confidence 34444333
No 22
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=36.97 E-value=62 Score=28.80 Aligned_cols=40 Identities=28% Similarity=0.293 Sum_probs=26.6
Q ss_pred CCCh-HHHHHHHHHcCC-CHHHHHHHHhhcCCcchHHHHHHhhhhhhhhhhcCchhhHHHHHHH
Q 015583 135 VGLP-DDMMEAAKTVGI-RKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEI 196 (404)
Q Consensus 135 ~sLP-~Dl~~A~~~ggi-~~~~L~rfl~l~~~~~~l~~L~r~f~gfR~RlLADP~FlfKl~iE~ 196 (404)
.+.| +.|.+|++.|.+ ++++|.+ -.+|||+||++ |-.++.
T Consensus 16 ~s~PD~~L~~aA~~g~L~~~~~l~~--------------------q~~RML~dpr~--~~~~~~ 57 (128)
T PF07631_consen 16 GSPPDAELLDAAAAGELRTPEQLRA--------------------QAERMLADPRA--RRFVER 57 (128)
T ss_pred cCCCCHHHHHHHHhCCCCCHHHHHH--------------------HHHHHHcCccH--HHHHHH
Confidence 3444 457888888888 5555544 26899999988 444443
No 23
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=36.48 E-value=45 Score=32.67 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=7.3
Q ss_pred CCccCHHHHHHHHH
Q 015583 118 GPILKFEEVMKEIE 131 (404)
Q Consensus 118 g~~l~~~~Vl~~a~ 131 (404)
|..+++..-|+||+
T Consensus 127 gSWQDLKDHmReaG 140 (241)
T KOG0105|consen 127 GSWQDLKDHMREAG 140 (241)
T ss_pred CchHHHHHHHHhhC
Confidence 34455555555554
No 24
>PLN02705 beta-amylase
Probab=34.00 E-value=56 Score=36.73 Aligned_cols=13 Identities=8% Similarity=-0.003 Sum_probs=6.1
Q ss_pred cCchhhhHHHHhh
Q 015583 279 RFSVKQRIATYFY 291 (404)
Q Consensus 279 ~fsl~qR~~a~~~ 291 (404)
+|+--+++..++.
T Consensus 303 dWsgY~~L~~mvr 315 (681)
T PLN02705 303 VWSGYRELFNIIR 315 (681)
T ss_pred CcHHHHHHHHHHH
Confidence 3444455555554
No 25
>PF07096 DUF1358: Protein of unknown function (DUF1358); InterPro: IPR009792 This family consists of several hypothetical eukaryotic proteins of around 125 residues in length. The function of this family is unknown.
Probab=29.47 E-value=56 Score=29.63 Aligned_cols=53 Identities=26% Similarity=0.309 Sum_probs=30.5
Q ss_pred ceeeehhhhhHhhhhHHHHHHHHHHhhhcCCCC---------CCCCCChhhhhhHHHHHHHhhc
Q 015583 293 GVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSE---------DDIPVPPLVKSAALWGVFLAVS 347 (404)
Q Consensus 293 G~~l~~VGf~aGlvG~glsN~L~~~Rr~~~~~~---------~~~~~PPv~~sAl~wg~fMGvS 347 (404)
++.|+.|+.++-++|-+. .|..+||+.++.. .+.....+-.-|++||-.+.+.
T Consensus 31 ~~FL~~Va~~s~~aGF~~--tl~~aKKk~p~~F~kg~~~~~~l~esGasLAlRALgWGTlyA~~ 92 (124)
T PF07096_consen 31 GAFLGGVAGASALAGFGT--TLALAKKKSPKWFSKGISQTKALHESGASLALRALGWGTLYAVC 92 (124)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHhcCcHHHhccCcCcccCCcchHHHHHHHHhHHHHHHHH
Confidence 344555666665555444 4556777665431 1112235678899999776654
No 26
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=29.45 E-value=64 Score=32.04 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=26.6
Q ss_pred hhccCCCCCCCCcccccCCCccccCCCCcccccCCCCCCCCCCCC
Q 015583 46 LQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSP 90 (404)
Q Consensus 46 ~~~v~~~~~~~p~~~~i~gr~~~~~~~~~~~~~s~~g~g~~g~~~ 90 (404)
+-|.|-| ..|||.++|=|.-+.-+ .+|-+.+.+-.+.+|+.+
T Consensus 149 TW~~GDp--rRPyPtd~EmR~GLlGk-~~~~in~ps~s~~Ngg~P 190 (272)
T KOG4552|consen 149 TWQMGDP--RRPYPTDHEMRAGLLGK-QRPLINSPSASSSNGGAP 190 (272)
T ss_pred ccccCCC--CCCCCchhHHhccCccc-cccccCCCCcCCCCCCCC
Confidence 5566644 45899988877665332 566666666666666555
No 27
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=28.81 E-value=52 Score=31.60 Aligned_cols=44 Identities=14% Similarity=-0.005 Sum_probs=30.0
Q ss_pred HHHcCCCHHHHHHHHhhcCCc-chH---HHHHHhh--hhhhhhhhcCchh
Q 015583 145 AKTVGIRKMFLLRYLDLQGSV-WPL---GFLMRYC--FMLRDRMLADPSF 188 (404)
Q Consensus 145 ~~~ggi~~~~L~rfl~l~~~~-~~l---~~L~r~f--~gfR~RlLADP~F 188 (404)
++.|.|+++.+.+.++...+. .|. +-+.|.+ +.||.|||+|..=
T Consensus 11 ~eKGli~~~~id~~i~~~~~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~a 60 (185)
T TIGR01323 11 KSKGLIPEGAVDQLTSLYENEWGPENGAKVVAKAWVDPEFRALLLKDATA 60 (185)
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchhhhhhHHhcCHHHHHHHHhChHH
Confidence 456667999888888765542 222 4455555 8999999999653
No 28
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=28.77 E-value=68 Score=37.90 Aligned_cols=9 Identities=22% Similarity=0.419 Sum_probs=3.4
Q ss_pred ceeeeeccc
Q 015583 26 PTTVFLSLR 34 (404)
Q Consensus 26 ~~~~~~~l~ 34 (404)
|..-+..|.
T Consensus 1139 pSAa~inLm 1147 (1282)
T KOG0921|consen 1139 PSAADINLM 1147 (1282)
T ss_pred cccccccce
Confidence 333333333
No 29
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.65 E-value=11 Score=31.37 Aligned_cols=21 Identities=33% Similarity=0.740 Sum_probs=19.2
Q ss_pred hhhhhhHHHHHHHhhchhhHH
Q 015583 332 PLVKSAALWGVFLAVSSNIRY 352 (404)
Q Consensus 332 Pv~~sAl~wg~fMGvSSNlRY 352 (404)
-++.+|.++|+||++-|-+||
T Consensus 51 t~~~SagtFG~FM~igs~Ir~ 71 (75)
T KOG4096|consen 51 TMLQSAGTFGLFMGIGSGIRC 71 (75)
T ss_pred HHHhccchhhhhhhhhhheec
Confidence 478999999999999998887
No 30
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=28.59 E-value=61 Score=22.60 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=14.3
Q ss_pred HHHHHHHcCCCHHHHHHHHhhc
Q 015583 141 MMEAAKTVGIRKMFLLRYLDLQ 162 (404)
Q Consensus 141 l~~A~~~ggi~~~~L~rfl~l~ 162 (404)
+++ |..-||+.+.+++||+.+
T Consensus 9 i~e-A~~~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 9 IKE-AKESGLSKEEIREFLEFN 29 (30)
T ss_dssp HHH-HHHTT--HHHHHHHHHHH
T ss_pred HHH-HHHcCCCHHHHHHHHHhC
Confidence 344 446669999999999875
No 31
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=28.22 E-value=1e+02 Score=34.06 Aligned_cols=6 Identities=33% Similarity=0.119 Sum_probs=2.7
Q ss_pred cCCCcc
Q 015583 62 IPGKIT 67 (404)
Q Consensus 62 i~gr~~ 67 (404)
|.||.+
T Consensus 550 ~~~~~~ 555 (629)
T PRK11634 550 ILNKPM 555 (629)
T ss_pred ccCCce
Confidence 444444
No 32
>COG4278 Uncharacterized conserved protein [Function unknown]
Probab=27.76 E-value=67 Score=32.30 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=7.0
Q ss_pred cccCCCCCCC
Q 015583 76 RIHSSGGDGG 85 (404)
Q Consensus 76 ~~~s~~g~g~ 85 (404)
+|+|.+|.|+
T Consensus 228 ~~gs~~g~gd 237 (269)
T COG4278 228 NFGSPSGVGD 237 (269)
T ss_pred CcCCCccccc
Confidence 5777777775
No 33
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=27.01 E-value=62 Score=31.04 Aligned_cols=10 Identities=50% Similarity=0.677 Sum_probs=4.7
Q ss_pred CCCCcccccC
Q 015583 109 GNDGEEKEFG 118 (404)
Q Consensus 109 ~~~~~~~e~g 118 (404)
++|+||+|=|
T Consensus 165 ~ndeedee~g 174 (180)
T KOG3158|consen 165 DNDEEDEEGG 174 (180)
T ss_pred cccchhhhcc
Confidence 4445554443
No 34
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=26.73 E-value=48 Score=35.39 Aligned_cols=26 Identities=27% Similarity=0.632 Sum_probs=16.7
Q ss_pred hHHHHHHHHHcC-------C--CHHHHHHHHhhcC
Q 015583 138 PDDMMEAAKTVG-------I--RKMFLLRYLDLQG 163 (404)
Q Consensus 138 P~Dl~~A~~~gg-------i--~~~~L~rfl~l~~ 163 (404)
-+||.+|++..| + ...+|+.|=|++.
T Consensus 45 eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~ 79 (494)
T KOG1456|consen 45 EADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEG 79 (494)
T ss_pred hhHHHHHHhcCCceEEEEeccccceeeeeeccccc
Confidence 367888887766 1 4556666666654
No 35
>PF11318 DUF3120: Protein of unknown function (DUF3120); InterPro: IPR021468 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.11 E-value=42 Score=32.69 Aligned_cols=45 Identities=22% Similarity=0.468 Sum_probs=31.4
Q ss_pred hHHHHhhcceeeehhhhhHhhhhHHHHHHHHHHhhhcCCC-----CCCCCCChhhhhhHH
Q 015583 285 RIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKS-----EDDIPVPPLVKSAAL 339 (404)
Q Consensus 285 R~~a~~~KG~~l~~VGf~aGlvG~glsN~L~~~Rr~~~~~-----~~~~~~PPv~~sAl~ 339 (404)
|+|+.|| +++++||+++...+..-..++-- .++.+.|+++.+|+.
T Consensus 96 kvg~~FY----------LgSLlGTA~TD~y~~ltglmp~Wrqvm~a~~~~A~~il~~A~~ 145 (203)
T PF11318_consen 96 KVGNWFY----------LGSLLGTAITDLYFYLTGLMPYWRQVMQADPDEAPPILQSALA 145 (203)
T ss_pred eeehhhH----------HHHHHhHHHHHHHHHHHccHHHhHHHHhcCHHHhHHHHHHHHH
Confidence 8999998 67899999998776553333221 134456889988865
No 36
>PF15059 Speriolin_C: Speriolin C-terminus
Probab=24.65 E-value=43 Score=31.07 Aligned_cols=67 Identities=24% Similarity=0.355 Sum_probs=45.3
Q ss_pred HHcCCCChHHHHHHHH-------HcCCCHHHHHHHHhhcCC-----------cchHHHHHHhhhhhhhhhh------cC-
Q 015583 131 ELKGVGLPDDMMEAAK-------TVGIRKMFLLRYLDLQGS-----------VWPLGFLMRYCFMLRDRML------AD- 185 (404)
Q Consensus 131 ~~~~~sLP~Dl~~A~~-------~ggi~~~~L~rfl~l~~~-----------~~~l~~L~r~f~gfR~RlL------AD- 185 (404)
+-+..+.|.-+.|+-- +.+-+.+..+||.++.++ |...-+|+++|.-+|+|-- -.
T Consensus 26 Gft~sNipeKi~Q~s~~p~~~~~De~~r~~L~~ry~~im~rL~~lGY~~~~HP~lsE~lVN~yGILr~rp~l~a~~~~~y 105 (146)
T PF15059_consen 26 GFTVSNIPEKIIQASTNPLDGKVDEEKRQTLTQRYVSIMNRLQKLGYNRRVHPGLSEFLVNTYGILRERPELAASEGGSY 105 (146)
T ss_pred cccccccHHHHHhhccCccccccCHHHHHHHHHHHHHHHHHHHHcCCCCccCchHHHHHHHHccccccCcccccCcCcCC
Confidence 3445566777766654 333456778888887664 4445788999988888741 11
Q ss_pred chhhHHHHHHHH
Q 015583 186 PSFLFKVGTEIV 197 (404)
Q Consensus 186 P~FlfKl~iE~~ 197 (404)
|.||.|+.+|.+
T Consensus 106 p~~L~~~v~~~v 117 (146)
T PF15059_consen 106 PDFLRRVVIETV 117 (146)
T ss_pred HHHHHHHHHHhc
Confidence 889999988765
No 37
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=24.46 E-value=59 Score=26.54 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=31.3
Q ss_pred ehhhhhHhhhhHHHHHHHHHHhhhcCCCCCCC-CCChhhhhhHHHHHHHhhchhhH
Q 015583 297 GSVGLVCGIIGQGIANLIMTAKRNIKKSEDDI-PVPPLVKSAALWGVFLAVSSNIR 351 (404)
Q Consensus 297 ~~VGf~aGlvG~glsN~L~~~Rr~~~~~~~~~-~~PPv~~sAl~wg~fMGvSSNlR 351 (404)
++||.+.|++-...+ ..|....+.+.-. -.--++.++.++|.||++=|=+|
T Consensus 15 ~~VG~~~G~l~G~~~----~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IR 66 (67)
T PF10247_consen 15 GAVGGAFGALFGTFS----AFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSVIR 66 (67)
T ss_pred hHHHhhhhhhhhhHH----HhccCCCCcchHhHHhHHHhcchhHHHHHHhhhcccc
Confidence 456666665554443 3444444432211 12358899999999999987665
No 38
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=24.31 E-value=85 Score=32.08 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=7.2
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 015583 216 WSEFELYLADLLVGLVVD 233 (404)
Q Consensus 216 ~~ElDfV~ad~v~g~v~d 233 (404)
|+-+-==++.-|++-+-|
T Consensus 134 WnPfrSKLAA~I~gGvdn 151 (317)
T KOG1596|consen 134 WNPFRSKLAAGILGGVDN 151 (317)
T ss_pred eChHHHHHHHHhhcCccc
Confidence 444433344444443333
No 39
>PF05387 Chorion_3: Chorion family 3; InterPro: IPR008449 This family consists Drosophila chorion proteins S36 and S38, which are involved in chorion membrane formation. The proteins consist of a central domain and two flanking 'arms'. The central domain contains tandemly repetitive peptides, which apparently generate a secondary structure of beta-sheet strands alternating with beta-turns, most probably, forming a twisted beta-pleated sheet or beta-barrel [].
Probab=23.58 E-value=88 Score=31.55 Aligned_cols=16 Identities=38% Similarity=0.738 Sum_probs=10.3
Q ss_pred cccccCCCCCCCCCCC
Q 015583 74 EPRIHSSGGDGGAGDS 89 (404)
Q Consensus 74 ~~~~~s~~g~g~~g~~ 89 (404)
...|+|+++.||.|+.
T Consensus 17 sanYGs~gg~gG~G~~ 32 (277)
T PF05387_consen 17 SANYGSGGGGGGPGSQ 32 (277)
T ss_pred ccccCCCCCCCCCCcc
Confidence 4578887766655444
No 40
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=23.19 E-value=3e+02 Score=23.75 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=50.2
Q ss_pred cCHHHHHHHHHHcCCCChHHHHHHHHHcCCCHHHHHHHHhhcCCcchHHHHHHhhh--hhhhhhhcCchhhHHHHHHHHh
Q 015583 121 LKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCF--MLRDRMLADPSFLFKVGTEIVI 198 (404)
Q Consensus 121 l~~~~Vl~~a~~~~~sLP~Dl~~A~~~ggi~~~~L~rfl~l~~~~~~l~~L~r~f~--gfR~RlLADP~FlfKl~iE~~I 198 (404)
....+|++........ |-++.+.++..++++..|.|.|.-...-.|..|+.+ .+ .-++.|+.-..=+..++.|++.
T Consensus 9 ~~i~~~~~~I~~~~~~-~~sl~~lA~~~g~S~~~l~r~Fk~~~G~s~~~~l~~-~Rl~~A~~~L~~t~~~i~eIA~~~Gf 86 (127)
T PRK11511 9 ITIHSILDWIEDNLES-PLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRS-RKMTEIAQKLKESNEPILYLAERYGF 86 (127)
T ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHhCC
Confidence 3456777777777655 677888888899999999999998865556566533 32 2344444322224555555554
Q ss_pred hh
Q 015583 199 DS 200 (404)
Q Consensus 199 ~i 200 (404)
.-
T Consensus 87 ~s 88 (127)
T PRK11511 87 ES 88 (127)
T ss_pred CC
Confidence 43
No 41
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=23.06 E-value=51 Score=33.05 Aligned_cols=6 Identities=50% Similarity=1.043 Sum_probs=2.6
Q ss_pred HHhhcC
Q 015583 158 YLDLQG 163 (404)
Q Consensus 158 fl~l~~ 163 (404)
|||+..
T Consensus 38 YlDvkq 43 (263)
T KOG3074|consen 38 YLDVKQ 43 (263)
T ss_pred EEEecc
Confidence 444444
No 42
>TIGR03795 chp_BMA0021 conserved hypothetical protein, BMA_0021 family. Members of this protein family are found sparsely, mostly in members of the genus Burkholderia. Members often occur as tandem homologous genes, such as BMA_0021 and BMA_0022 in Burkholderia mallei ATCC 23344. The genes regularly are encoded near the so-called docking protein of TOMM (thiazole/oxazole-modified microcins) biosynthetic clusters, suggesting a role in bacteriocin biosynthesis. The function is unknown.
Probab=22.75 E-value=53 Score=29.30 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.0
Q ss_pred HHHHHHhh--hhhhhhhhcCch
Q 015583 168 LGFLMRYC--FMLRDRMLADPS 187 (404)
Q Consensus 168 l~~L~r~f--~gfR~RlLADP~ 187 (404)
++-+-+++ +.||+||++||.
T Consensus 18 lraIA~AW~DpaFr~eLl~DPk 39 (114)
T TIGR03795 18 LRAIALAWHSPEFKDELLADPV 39 (114)
T ss_pred HHHHHHHhCCHHHHHHHHHCHH
Confidence 56666655 899999999997
No 43
>COG3521 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.02 E-value=68 Score=30.14 Aligned_cols=29 Identities=38% Similarity=0.571 Sum_probs=23.4
Q ss_pred CcccccccCCCCCCCCCCCCccccceeeeeccccccccCcch
Q 015583 2 SACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPAL 43 (404)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 43 (404)
++|||+=.+ .| |+.++|+|+-+-.-|++-
T Consensus 18 sgCsss~~~------~p-------p~~l~l~l~a~~~~Np~~ 46 (159)
T COG3521 18 SGCSSSKPL------LP-------PSRLDLTLTAAPDLNPNA 46 (159)
T ss_pred hhhccCCCC------CC-------CcEEEEEEEecCCcCCCC
Confidence 689887544 23 999999999998888876
No 44
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.97 E-value=1.6e+02 Score=32.84 Aligned_cols=49 Identities=18% Similarity=0.062 Sum_probs=28.6
Q ss_pred cccccCCccCHHHHHHHHHHcCCCC--------hHHHHHHHHHcCCCHHHHHHHHhhc
Q 015583 113 EEKEFGPILKFEEVMKEIELKGVGL--------PDDMMEAAKTVGIRKMFLLRYLDLQ 162 (404)
Q Consensus 113 ~~~e~g~~l~~~~Vl~~a~~~~~sL--------P~Dl~~A~~~ggi~~~~L~rfl~l~ 162 (404)
++++-+.--..+++++++.++...= =.++.+=++.|| .|+.++++|.=.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~l~~~D~Imep~i~~~i~~y~~~gG-~p~~vv~~Ls~~ 80 (584)
T PF04858_consen 24 DEEESEADEEPEEVLEECLRRLSQPDAIMEPSIFDTIKRYFRAGG-DPEEVVELLSEN 80 (584)
T ss_pred ccccccCCCChHHHHHHHHHhcCCCCeeeCchHHHHHHHHHHCCC-CHHHHHHHHHHh
Confidence 3333344456788888888876652 234555555555 556666666533
No 45
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=20.28 E-value=1e+02 Score=32.05 Aligned_cols=34 Identities=32% Similarity=0.589 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCC
Q 015583 86 AGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGP 119 (404)
Q Consensus 86 ~g~~~~~~g~~~g~~ggg~~~g~~~~~~~~e~g~ 119 (404)
.+...++|||+|+++|-|.+.|++.......+++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (456)
T PRK10590 389 NGRQQRGGGGRGQGGGRGQQQGQPRRGEGGAKSA 422 (456)
T ss_pred cCcCCCCCCCCCCCCCCCCCCCCCCcCCCCCccc
Done!