Query 015583
Match_columns 404
No_of_seqs 117 out of 148
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:08:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pk2_A Cyclin-T1, protein TAT; 95.5 0.0023 7.9E-08 63.2 0.0 7 81-87 279-285 (358)
2 2pk2_A Cyclin-T1, protein TAT; 94.1 0.0089 3E-07 59.0 0.0 7 69-75 273-279 (358)
3 3qyh_A CO-type nitrIle hydrata 67.8 3.7 0.00013 38.9 3.5 44 145-188 48-97 (226)
4 3hht_A NitrIle hydratase alpha 60.4 5.8 0.0002 37.4 3.4 45 145-189 37-87 (216)
5 2zzd_C Thiocyanate hydrolase s 37.9 15 0.00052 35.0 2.4 43 145-187 39-86 (243)
6 4fm4_A NitrIle hydratase alpha 37.7 15 0.0005 34.5 2.2 42 146-187 22-69 (209)
7 1ugp_A NitrIle hydratase alpha 35.4 19 0.00064 33.7 2.5 46 145-190 28-79 (203)
8 3a8g_A NitrIle hydratase subun 33.6 12 0.00042 35.0 0.9 45 145-189 31-81 (207)
9 3p8c_D Wiskott-aldrich syndrom 29.1 13 0.00044 36.2 0.3 8 45-52 125-132 (279)
10 3u5c_J 40S ribosomal protein S 27.3 10 0.00035 35.2 -0.7 11 35-45 116-126 (197)
11 3ng9_A Capsid protein; beta ba 26.6 18 0.00061 39.5 0.9 11 169-179 298-308 (736)
12 3ntt_A Capsid protein; gene th 26.5 16 0.00055 39.8 0.5 10 170-179 289-298 (724)
13 3pgz_A Single-stranded DNA-bin 24.2 16 0.00055 33.6 0.0 8 58-65 119-126 (193)
14 4b4t_W RPN10, 26S proteasome r 23.1 22 0.00076 33.9 0.8 12 110-121 221-232 (268)
15 3mn2_A Probable ARAC family tr 22.0 2.4E+02 0.0082 21.7 6.5 74 124-199 5-82 (108)
16 3mkl_A HTH-type transcriptiona 21.9 2.4E+02 0.008 22.3 6.6 63 123-188 9-72 (120)
No 1
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=95.51 E-value=0.0023 Score=63.23 Aligned_cols=7 Identities=43% Similarity=0.995 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 015583 81 GGDGGAG 87 (404)
Q Consensus 81 ~g~g~~g 87 (404)
++.||+|
T Consensus 279 ~~~~~~~ 285 (358)
T 2pk2_A 279 SEQGGTG 285 (358)
T ss_dssp -------
T ss_pred cccCCCC
Confidence 3344443
No 2
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=94.11 E-value=0.0089 Score=59.05 Aligned_cols=7 Identities=0% Similarity=0.031 Sum_probs=0.0
Q ss_pred cCCCCcc
Q 015583 69 ESADCEP 75 (404)
Q Consensus 69 ~~~~~~~ 75 (404)
++...-.
T Consensus 273 ~~~~s~~ 279 (358)
T 2pk2_A 273 GTDEKTS 279 (358)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3333333
No 3
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=67.77 E-value=3.7 Score=38.93 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=31.9
Q ss_pred HHHcCCCHHHHHHHHh-hcCCcchH---HHHHHhh--hhhhhhhhcCchh
Q 015583 145 AKTVGIRKMFLLRYLD-LQGSVWPL---GFLMRYC--FMLRDRMLADPSF 188 (404)
Q Consensus 145 ~~~ggi~~~~L~rfl~-l~~~~~~l---~~L~r~f--~gfR~RlLADP~F 188 (404)
++.|.|+++.+.++++ ++..-.|. +-+-|.+ +.||.|||+||.=
T Consensus 48 ~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~Dp~FK~rLL~D~~a 97 (226)
T 3qyh_A 48 IEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGTA 97 (226)
T ss_dssp HHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCCHHHHHHHHHCHHH
Confidence 5678889999999998 54433333 4444555 8999999999864
No 4
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=60.36 E-value=5.8 Score=37.37 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=31.9
Q ss_pred HHHcCCCHHHHHHHHhh-cCCcchH---HHHHHhh--hhhhhhhhcCchhh
Q 015583 145 AKTVGIRKMFLLRYLDL-QGSVWPL---GFLMRYC--FMLRDRMLADPSFL 189 (404)
Q Consensus 145 ~~~ggi~~~~L~rfl~l-~~~~~~l---~~L~r~f--~gfR~RlLADP~Fl 189 (404)
++.|.|+++.+.++.+. +..-.|. +-+-|.+ +.||.|||+||.=.
T Consensus 37 ~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~Dp~FK~rLL~Dp~aA 87 (216)
T 3hht_A 37 IEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSETV 87 (216)
T ss_dssp HHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHHHH
Confidence 44677899999999986 4443333 3444444 89999999998643
No 5
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=37.94 E-value=15 Score=35.05 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=30.2
Q ss_pred HHHcCCCHHHHHHHHhhcCCcchH---HHHHHhh--hhhhhhhhcCch
Q 015583 145 AKTVGIRKMFLLRYLDLQGSVWPL---GFLMRYC--FMLRDRMLADPS 187 (404)
Q Consensus 145 ~~~ggi~~~~L~rfl~l~~~~~~l---~~L~r~f--~gfR~RlLADP~ 187 (404)
++.|.|+++.+.++.+.-....|. +-+-|.+ +.||+|||+|+.
T Consensus 39 ~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~DP~fk~~Ll~d~~ 86 (243)
T 2zzd_C 39 IEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGV 86 (243)
T ss_dssp HHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCCHHHHHHHHHChH
Confidence 456777999999998853222343 4455555 889999999964
No 6
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=37.66 E-value=15 Score=34.53 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=30.0
Q ss_pred HHcCCCHHHHHHHHh-hcCCcchH---HHHHHhh--hhhhhhhhcCch
Q 015583 146 KTVGIRKMFLLRYLD-LQGSVWPL---GFLMRYC--FMLRDRMLADPS 187 (404)
Q Consensus 146 ~~ggi~~~~L~rfl~-l~~~~~~l---~~L~r~f--~gfR~RlLADP~ 187 (404)
+.|.|+++.+..|.+ ++..-.|. +-+-|.+ +.||+|||+|+.
T Consensus 22 eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~Dp~Fk~~Ll~D~~ 69 (209)
T 4fm4_A 22 ELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTDPVFKAQLLSEGV 69 (209)
T ss_dssp HTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCCHHHHHHHHHHHH
Confidence 468889999999998 44332233 4455555 899999999984
No 7
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=35.45 E-value=19 Score=33.65 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=31.6
Q ss_pred HHHcCCCHHHHHHHHhhc-CCcchH---HHHHHhh--hhhhhhhhcCchhhH
Q 015583 145 AKTVGIRKMFLLRYLDLQ-GSVWPL---GFLMRYC--FMLRDRMLADPSFLF 190 (404)
Q Consensus 145 ~~~ggi~~~~L~rfl~l~-~~~~~l---~~L~r~f--~gfR~RlLADP~Flf 190 (404)
++.|.|+++.+.++.+.- ....|. +-+.|.+ +.||.|||+|+.=..
T Consensus 28 ~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~aA~ 79 (203)
T 1ugp_A 28 IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTEAC 79 (203)
T ss_dssp HHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCCHHHHHHHHhChHHHH
Confidence 346777999999999863 332333 3444555 899999999976443
No 8
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=33.56 E-value=12 Score=35.04 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=30.4
Q ss_pred HHHcCCCHHHHHHHHhhc-CCcchH---HHHHHhh--hhhhhhhhcCchhh
Q 015583 145 AKTVGIRKMFLLRYLDLQ-GSVWPL---GFLMRYC--FMLRDRMLADPSFL 189 (404)
Q Consensus 145 ~~~ggi~~~~L~rfl~l~-~~~~~l---~~L~r~f--~gfR~RlLADP~Fl 189 (404)
++.|.|+++.+.++.+.- ..-.|. +-+.|.+ +.||.|||+|+.=.
T Consensus 31 ~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~DP~Fk~rLL~D~~aA 81 (207)
T 3a8g_A 31 DGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAA 81 (207)
T ss_dssp HTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCCHHHHHHHHHCHHHH
Confidence 345667999888888853 332333 4444555 89999999998643
No 9
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=29.09 E-value=13 Score=36.20 Aligned_cols=8 Identities=13% Similarity=-0.031 Sum_probs=5.5
Q ss_pred hhhccCCC
Q 015583 45 KLQCVGNN 52 (404)
Q Consensus 45 ~~~~v~~~ 52 (404)
-..|..+|
T Consensus 125 Y~~C~~PP 132 (279)
T 3p8c_D 125 YDVCEQPP 132 (279)
T ss_dssp HHHSBCCC
T ss_pred HHhcCCCC
Confidence 36777766
No 10
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=27.27 E-value=10 Score=35.15 Aligned_cols=11 Identities=9% Similarity=-0.019 Sum_probs=6.1
Q ss_pred cccccCcchhh
Q 015583 35 HSTATNPALCK 45 (404)
Q Consensus 35 ~~~~~~~~~~~ 45 (404)
.++..++.+++
T Consensus 116 ~G~a~Sr~~Ar 126 (197)
T 3u5c_J 116 LGLAKSVHHAR 126 (197)
T ss_dssp SSTTSSHHHHH
T ss_pred ccccCCHHHHH
Confidence 55665655543
No 11
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=26.58 E-value=18 Score=39.53 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=4.8
Q ss_pred HHHHHhhhhhh
Q 015583 169 GFLMRYCFMLR 179 (404)
Q Consensus 169 ~~L~r~f~gfR 179 (404)
.+|+....+||
T Consensus 298 Q~Lin~~~~ir 308 (736)
T 3ng9_A 298 QRLINNNWGFR 308 (736)
T ss_dssp HHHHHHEEEEE
T ss_pred HHHHHhcccee
Confidence 33444444444
No 12
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5}
Probab=26.54 E-value=16 Score=39.81 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=4.0
Q ss_pred HHHHhhhhhh
Q 015583 170 FLMRYCFMLR 179 (404)
Q Consensus 170 ~L~r~f~gfR 179 (404)
+|+....+||
T Consensus 289 ~Lin~y~~~r 298 (724)
T 3ntt_A 289 RLINNYWGFR 298 (724)
T ss_dssp HHHHHEEEEE
T ss_pred HHHHhhccee
Confidence 3334344444
No 13
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=24.16 E-value=16 Score=33.55 Aligned_cols=8 Identities=38% Similarity=0.115 Sum_probs=3.6
Q ss_pred cccccCCC
Q 015583 58 KTIEIPGK 65 (404)
Q Consensus 58 ~~~~i~gr 65 (404)
+..||.-.
T Consensus 119 ~~tEVva~ 126 (193)
T 3pgz_A 119 YTTEIVLQ 126 (193)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEE
Confidence 44444443
No 14
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.14 E-value=22 Score=33.89 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred CCCcccccCCcc
Q 015583 110 NDGEEKEFGPIL 121 (404)
Q Consensus 110 ~~~~~~e~g~~l 121 (404)
|++.|-|.=--|
T Consensus 221 dp~~dpela~al 232 (268)
T 4b4t_W 221 DPSMDPELAMAL 232 (268)
T ss_dssp ------------
T ss_pred CCCCCHHHHHHH
Confidence 444554443333
No 15
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=22.00 E-value=2.4e+02 Score=21.66 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHcCCCHHHHHHHHhhcCCcchHHHHHHh-hhhhhhhhhcCch---hhHHHHHHHHhh
Q 015583 124 EEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRY-CFMLRDRMLADPS---FLFKVGTEIVID 199 (404)
Q Consensus 124 ~~Vl~~a~~~~~sLP~Dl~~A~~~ggi~~~~L~rfl~l~~~~~~l~~L~r~-f~gfR~RlLADP~---FlfKl~iE~~I~ 199 (404)
++|++........ |-.+.+.++.-++|+..|.|.|.-...-.|..|+.+. +.-- .++|.+.. =+..++.+++-.
T Consensus 5 ~~~~~~i~~~~~~-~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~~~~~~~~Rl~~A-~~lL~~~~~~~si~~IA~~~Gf~ 82 (108)
T 3mn2_A 5 RQVEEYIEANWMR-PITIEKLTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHA-HNLLSDGATPTTVTAAALSCGFS 82 (108)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHTCCHHHHHHHHHHHTSSCHHHHHHHHHHHHH-HHHHHSSSSCCCHHHHHHHTTCC
T ss_pred HHHHHHHHHcccC-CCCHHHHHHHHCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHcCCCCCCHHHHHHHhCCC
Confidence 4555555555433 3455566677889999999999988666666666442 2222 34555544 456666666554
No 16
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=21.93 E-value=2.4e+02 Score=22.28 Aligned_cols=63 Identities=11% Similarity=-0.033 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHcCCCHHHHHHHHhhcCCcchHHHHHHh-hhhhhhhhhcCchh
Q 015583 123 FEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRY-CFMLRDRMLADPSF 188 (404)
Q Consensus 123 ~~~Vl~~a~~~~~sLP~Dl~~A~~~ggi~~~~L~rfl~l~~~~~~l~~L~r~-f~gfR~RlLADP~F 188 (404)
.++|++........ |-.+.+.++.-++|+..|.|.|.-. .-.|..|+.+. +.-- .++|.++..
T Consensus 9 ~~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~-G~s~~~~~~~~Rl~~A-~~lL~~~~~ 72 (120)
T 3mkl_A 9 RTRVCTVINNNIAH-EWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTECRMQRA-LQLIVIHGF 72 (120)
T ss_dssp HHHHHHHHHTSTTS-CCCHHHHHHHTTCCHHHHHHHHHHT-TCCHHHHHHHHHHHHH-HHHHTSTTC
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHCcCHHHHHHHHHHc-CCCHHHHHHHHHHHHH-HHHHHcCCC
Confidence 35666666666554 5567777888999999999999876 44555555442 2222 245555543
Done!