Query 015583
Match_columns 404
No_of_seqs 117 out of 148
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 15:08:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015583.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015583hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ugpa_ d.149.1.1 (A:) Cobalt- 65.3 1.9 0.00014 38.1 3.3 61 124-187 10-76 (203)
2 d1v29a_ d.149.1.1 (A:) Cobalt- 64.5 2.4 0.00017 37.5 3.8 43 145-187 27-75 (203)
3 d2qdya1 d.149.1.1 (A:10-206) I 48.9 3 0.00022 36.6 1.7 42 146-187 23-70 (197)
4 d1x3zb1 a.189.1.1 (B:253-309) 40.8 7.3 0.00053 27.6 2.3 28 169-196 29-56 (57)
5 d1qusa_ d.2.1.6 (A:) 36 kDa so 18.6 39 0.0029 30.9 3.8 71 127-220 88-158 (322)
6 d1b0na1 a.34.1.1 (A:74-108) Si 14.5 58 0.0042 20.9 2.6 21 142-163 10-30 (35)
7 d2c5ra1 a.251.1.1 (A:66-129) E 12.6 90 0.0065 22.2 3.5 41 124-164 7-48 (64)
8 d1q5za_ a.196.1.1 (A:) Invasio 12.1 90 0.0066 25.3 3.9 62 172-233 52-140 (145)
9 d1lnza1 b.117.1.1 (A:1-157) Ob 10.2 99 0.0072 25.1 3.6 9 80-88 11-19 (157)
10 d1riqa1 a.203.1.1 (A:237-457) 10.1 49 0.0036 28.5 1.6 64 165-229 56-123 (221)
No 1
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=65.32 E-value=1.9 Score=38.08 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHcCCCHHHHHHHHhh-cCCcchH---HHHHHhh--hhhhhhhhcCch
Q 015583 124 EEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDL-QGSVWPL---GFLMRYC--FMLRDRMLADPS 187 (404)
Q Consensus 124 ~~Vl~~a~~~~~sLP~Dl~~A~~~ggi~~~~L~rfl~l-~~~~~~l---~~L~r~f--~gfR~RlLADP~ 187 (404)
|+...+...|-.+|=.=| ++.|.|+++.+.++++. +..-.|. +-+-|.+ +.||.|||+|+.
T Consensus 10 e~~~~~~~~RvkAle~lL---ieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp~FK~rLL~D~~ 76 (203)
T d1ugpa_ 10 EEIQKEITARVKALESML---IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGT 76 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred hhccccHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHH
Confidence 344445555544444333 45788899999999995 4332343 4455555 899999999975
No 2
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=64.54 E-value=2.4 Score=37.51 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=31.6
Q ss_pred HHHcCCCHHHHHHHHhh-cCCcchH---HHHHHhh--hhhhhhhhcCch
Q 015583 145 AKTVGIRKMFLLRYLDL-QGSVWPL---GFLMRYC--FMLRDRMLADPS 187 (404)
Q Consensus 145 ~~~ggi~~~~L~rfl~l-~~~~~~l---~~L~r~f--~gfR~RlLADP~ 187 (404)
++.|.|+++.+.+.++. +..-.|. +-+-|.+ +.||+|||+|+.
T Consensus 27 ieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp~FK~rLL~D~~ 75 (203)
T d1v29a_ 27 IEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPEFKQRLLEDPE 75 (203)
T ss_dssp HHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCHHHHHHHHHSHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHH
Confidence 55788899999999984 4432344 4555656 899999999974
No 3
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=48.90 E-value=3 Score=36.64 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=30.5
Q ss_pred HHcCCCHHHHHHHHhh-cCCcchH---HHHHHhh--hhhhhhhhcCch
Q 015583 146 KTVGIRKMFLLRYLDL-QGSVWPL---GFLMRYC--FMLRDRMLADPS 187 (404)
Q Consensus 146 ~~ggi~~~~L~rfl~l-~~~~~~l---~~L~r~f--~gfR~RlLADP~ 187 (404)
+.|.|+++.+.++++. +..-.|. +-+-|.+ +.||.|||+||.
T Consensus 23 eKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~Dp~FK~rLL~D~~ 70 (197)
T d2qdya1 23 GKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGT 70 (197)
T ss_dssp TTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCCHHHHHHHHHHHH
Confidence 4677899999999984 5543344 4445555 899999999975
No 4
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.79 E-value=7.3 Score=27.59 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=23.5
Q ss_pred HHHHHhhhhhhhhhhcCchhhHHHHHHH
Q 015583 169 GFLMRYCFMLRDRMLADPSFLFKVGTEI 196 (404)
Q Consensus 169 ~~L~r~f~gfR~RlLADP~FlfKl~iE~ 196 (404)
-.|+.+++-+||.+++||.-...++.|-
T Consensus 29 e~ls~ryp~lre~im~npe~fismllea 56 (57)
T d1x3zb1 29 ENISARYPQLREHIMANPEVFVSMLLEA 56 (57)
T ss_dssp HHHHTTCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHhCHHHHHHHHHhh
Confidence 5677778999999999999888877763
No 5
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=18.64 E-value=39 Score=30.91 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=48.9
Q ss_pred HHHHHHcCCCChHHHHHHHHHcCCCHHHHHHHHhhcCCcchHHHHHHhhhhhhhhhhcCchhhHHHHHHHHhhhhhhhhH
Q 015583 127 MKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLA 206 (404)
Q Consensus 127 l~~a~~~~~sLP~Dl~~A~~~ggi~~~~L~rfl~l~~~~~~l~~L~r~f~gfR~RlLADP~FlfKl~iE~~I~i~~~~~a 206 (404)
++...+-...=-+-|.++-+.-||+++++..+.-+|.+- + ...+ + | -++++-++++.
T Consensus 88 i~~g~~~~~~~~~~l~~~e~~yGV~~~ii~aiwgvET~y---G-------~~~G----~--~-------~v~~aLaTLAf 144 (322)
T d1qusa_ 88 VQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRW---G-------RVMG----K--T-------RILDALATLSF 144 (322)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTT---T-------TCCC----C--E-------EHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhch---h-------hhcC----C--C-------cchhhhhhhhh
Confidence 333333333345667788888899999999999999752 2 1111 1 1 15677778889
Q ss_pred HHhhcCcchhhhHH
Q 015583 207 EFQKRGKDFWSEFE 220 (404)
Q Consensus 207 E~~~R~e~F~~ElD 220 (404)
++.+|.+.|.+||-
T Consensus 145 ~~~rR~~ff~~EL~ 158 (322)
T d1qusa_ 145 NYPRRAEYFSGELE 158 (322)
T ss_dssp SCGGGHHHHHHHHH
T ss_pred cccchhhhhhHHHH
Confidence 99999999999964
No 6
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=14.47 E-value=58 Score=20.88 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=16.9
Q ss_pred HHHHHHcCCCHHHHHHHHhhcC
Q 015583 142 MEAAKTVGIRKMFLLRYLDLQG 163 (404)
Q Consensus 142 ~~A~~~ggi~~~~L~rfl~l~~ 163 (404)
++|. .-|||.++.+.||++++
T Consensus 10 keAM-~SGvSK~QFrEflef~k 30 (35)
T d1b0na1 10 RDAM-TSGVSKKQFREFLDYQK 30 (35)
T ss_dssp HHHH-HSCCCHHHHHHHHHHHH
T ss_pred HHHH-HccCCHHHHHHHHHHHH
Confidence 4555 55699999999999885
No 7
>d2c5ra1 a.251.1.1 (A:66-129) Early protein gp16.7 {Bacteriophage phi-29 [TaxId: 10756]}
Probab=12.64 E-value=90 Score=22.20 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHcCC-CHHHHHHHHhhcCC
Q 015583 124 EEVMKEIELKGVGLPDDMMEAAKTVGI-RKMFLLRYLDLQGS 164 (404)
Q Consensus 124 ~~Vl~~a~~~~~sLP~Dl~~A~~~ggi-~~~~L~rfl~l~~~ 164 (404)
-+||.+-+++.-.+|.|+.+-+---.+ +...+.+|.+-+..
T Consensus 7 ~~vLDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~ 48 (64)
T d2c5ra1 7 VAVLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRT 48 (64)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCcHHHHHHHHHhhhhhHHHHHHHHHhhHh
Confidence 468999999999999999998877777 67778888876643
No 8
>d1q5za_ a.196.1.1 (A:) Invasion protein A (SipA) , C-terminal actin binding domain {Salmonella typhimurium [TaxId: 90371]}
Probab=12.14 E-value=90 Score=25.29 Aligned_cols=62 Identities=24% Similarity=0.206 Sum_probs=36.0
Q ss_pred HHhhhhhhhhhhcCchhhHHHHHHHHhhhhh--------hh-------------hHHHh----hcCc--chhhhHHHHHH
Q 015583 172 MRYCFMLRDRMLADPSFLFKVGTEIVIDSCC--------AT-------------LAEFQ----KRGK--DFWSEFELYLA 224 (404)
Q Consensus 172 ~r~f~gfR~RlLADP~FlfKl~iE~~I~i~~--------~~-------------~aE~~----~R~e--~F~~ElDfV~a 224 (404)
-|.|.++|.|+|-.+.|=.--...+..+|.- .+ ++|++ +--+ +...|-|++++
T Consensus 52 RRaFd~LRaeILpnD~~ks~alkaqcs~i~~~~eLk~k~~tLke~it~HPqrekLae~Alqf~REAgLt~lk~etdylls 131 (145)
T d1q5za_ 52 RRAFDGLRAEILPNDTIKSAALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIALQFAREAGLTRLKGETDYVLS 131 (145)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHCTTTTGGGSCHHHH
T ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHhccCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCcccCcccHHHH
Confidence 3778888888888888864433333333221 01 11111 0001 35678889999
Q ss_pred HHHHHHHHH
Q 015583 225 DLLVGLVVD 233 (404)
Q Consensus 225 d~v~g~v~d 233 (404)
+++-++|-|
T Consensus 132 ~~LDgli~d 140 (145)
T d1q5za_ 132 NVLDGLIGD 140 (145)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHHhcc
Confidence 988888766
No 9
>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=10.24 E-value=99 Score=25.10 Aligned_cols=9 Identities=67% Similarity=1.276 Sum_probs=5.6
Q ss_pred CCCCCCCCC
Q 015583 80 SGGDGGAGD 88 (404)
Q Consensus 80 ~~g~g~~g~ 88 (404)
.+|+||+|.
T Consensus 11 ~aG~GG~G~ 19 (157)
T d1lnza1 11 KGGDGGNGM 19 (157)
T ss_dssp ECCCCCCCC
T ss_pred EECCCCCcc
Confidence 357777764
No 10
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=10.10 E-value=49 Score=28.49 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=42.9
Q ss_pred cchHHHHHHhhhhhhhhhhcCchhhHHHHHHHHhhhhhhhhHHHhhcCcchhhhH----HHHHHHHHHH
Q 015583 165 VWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEF----ELYLADLLVG 229 (404)
Q Consensus 165 ~~~l~~L~r~f~gfR~RlLADP~FlfKl~iE~~I~i~~~~~aE~~~R~e~F~~El----DfV~ad~v~g 229 (404)
.|.+|-|+|+---+-.+|-.+..||++++ +.++..-....-|+.++.+...+.+ +-+..++-.|
T Consensus 56 GYvlRriiRRa~r~~~~lg~~~~~l~~lv-~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~f~~tl~~G 123 (221)
T d1riqa1 56 GYVIRRILRRAMRFGYKLGIENPFLYKGV-DLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAG 123 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCHHHHH-HHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccccchhhhhH-HHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777764333456778899999976 7777777777888888877654443 3444444433
Done!