BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015584
(404 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ASX5|Y5520_ARATH Uncharacterized aarF domain-containing protein kinase At5g05200,
chloroplastic OS=Arabidopsis thaliana GN=At5g05200 PE=1
SV=1
Length = 540
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/404 (86%), Positives = 386/404 (95%), Gaps = 1/404 (0%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
MGATYIKLGQFIAS+PTLFPPEYV+EFQNCFD+ P VPF EI++ L E+LGRPIESVYEY
Sbjct: 136 MGATYIKLGQFIASAPTLFPPEYVKEFQNCFDKAPPVPFEEIRKILQEELGRPIESVYEY 195
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
VDPTPIASAS+AQVHGARLRGSQ+DVVIKVLKPGIED LVADLNF+YVV+RI EFL+PE
Sbjct: 196 VDPTPIASASIAQVHGARLRGSQEDVVIKVLKPGIEDFLVADLNFIYVVSRIFEFLSPEF 255
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVL 180
SRTS+VGIVKDIRESMLEEVDF KEA NIESF+RYLE MGLT QATAP+VY++CS+RRVL
Sbjct: 256 SRTSLVGIVKDIRESMLEEVDFNKEAQNIESFKRYLETMGLTGQATAPRVYKYCSSRRVL 315
Query: 181 TMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDGR 240
TMERLYGVPLTDLDSI SLVSSPENSLITALNVWFGSLLACE+FHADVHAGNLWLLRDGR
Sbjct: 316 TMERLYGVPLTDLDSIRSLVSSPENSLITALNVWFGSLLACESFHADVHAGNLWLLRDGR 375
Query: 241 IGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFARDLEK 300
IGFLDFGIVGRISPKTWAAM++FLASIATEEYESMASALI+MGAT++D+D KAFA+DLEK
Sbjct: 376 IGFLDFGIVGRISPKTWAAMEVFLASIATEEYESMASALIQMGATNRDVDGKAFAKDLEK 435
Query: 301 IFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGLKFPREF 360
+FSSIQELDTE+VVATARGT ++TTAV+AN+V+DERQMNALFLDL+RVSESYGLKFPREF
Sbjct: 436 MFSSIQELDTEIVVATARGTNSDTTAVAANVVMDERQMNALFLDLVRVSESYGLKFPREF 495
Query: 361 ALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRR-NRYRDSF 403
ALLLKQLLYFDRYTRLLAPN+NMLQDQRISI SN+R N Y+DSF
Sbjct: 496 ALLLKQLLYFDRYTRLLAPNLNMLQDQRISIASNKRTNGYKDSF 539
>sp|P96936|Y647_MYCTU Uncharacterized protein Rv0647c/MT0675 OS=Mycobacterium
tuberculosis GN=Rv0647c PE=3 SV=1
Length = 488
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/391 (33%), Positives = 204/391 (52%), Gaps = 26/391 (6%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G TY+K GQ IASSP F EF+ DR P E+ + +E+LG ++
Sbjct: 103 LGPTYVKFGQIIASSPGAFGESLSREFRGLLDRVPPAKTDEVHKLFVEELGDEPARLFAS 162
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
+ P ASAS+AQVH A LR S ++VV+K+ +PGI + ADL + A+ +E L
Sbjct: 163 FEEEPFASASIAQVHYATLR-SGEEVVVKIQRPGIRRRVAADLQILKRFAQTVE-LAKLG 220
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVL 180
R S +V D +++ EE+DF+ EA ++E++ +L A L + P+V+ +T RVL
Sbjct: 221 RRLSAQDVVADFADNLAEELDFRLEAQSMEAWVSHLHASPLGKNIRVPQVHWDFTTERVL 280
Query: 181 TMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDGR 240
TMER++G+ + + +I + L F L FH D+HAGNL++ GR
Sbjct: 281 TMERVHGIRIDNAAAIRKAGFDGVELVKALLFSVFEGGLRHGLFHGDLHAGNLYVDEAGR 340
Query: 241 IGFLDFGIVGRISPKT-WAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFARDLE 299
I F DFGI+GRI P+T W +L A + +++ + ++ MGA A+DLE
Sbjct: 341 IVFFDFGIMGRIDPRTRWLLRELVYALLVKKDHAAAGKIVVLMGAVGTMKPETQAAKDLE 400
Query: 300 KIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGLKFPRE 359
+ AT + A+I RQ++AL +++Y +K PRE
Sbjct: 401 RF-------------ATPLTMQSLGDMSYADI---GRQLSAL-------ADAYDVKLPRE 437
Query: 360 FALLLKQLLYFDRYTRLLAPNMNMLQDQRIS 390
L+ KQ LY +RY +LLAP M+ D +++
Sbjct: 438 LVLIGKQFLYVERYMKLLAPRWQMMSDPQLT 468
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/393 (27%), Positives = 195/393 (49%), Gaps = 38/393 (9%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LGRPIESVY 58
+G +IK GQ +++ L PP+ EE DR P PF G+ R +E+ LG P+E+++
Sbjct: 64 LGPIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVP--PFCGQAARLKIEESLGCPVETLF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
+ D TP+ASAS+AQVH RL+ + ++VIKV++P IE V+ ADL + +AR++ P
Sbjct: 122 DDFDETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEADLRLMQTLARLVARFVP 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY-QHCSTR 177
+ +R + +V++ R+++L+E++ +EAAN RR + P+V+ +HC
Sbjct: 182 QSARLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTG---SDALYVPEVFTEHCRE- 237
Query: 178 RVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLR 237
VL MER+YG+P++D+ ++ + ++ + + V+F + FHAD+H GN+++
Sbjct: 238 HVLVMERIYGIPVSDIPALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVSY 297
Query: 238 DG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAK 292
+ IG +D GIVG ++ + + + +Y +A +E G D
Sbjct: 298 EHPDNPLWIG-IDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTKVD 356
Query: 293 AFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESY 352
F + + I E + E + L+L + +
Sbjct: 357 EFEFAIRTVLEPIFEKP-----------------------LSEISFGHVLLNLFNTARRF 393
Query: 353 GLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ + LL K LLY + R L P +++ Q
Sbjct: 394 NMAVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQ 426
>sp|A9KYL6|UBIB_SHEB9 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS195) GN=ubiB PE=3 SV=1
Length = 549
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 201/395 (50%), Gaps = 42/395 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVY 58
+G YIKLGQ +++ L E+ E D+ P PF G + R +E +L PIES++
Sbjct: 64 LGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELKAPIESLF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
+ + TP+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+++E+L
Sbjct: 122 DDFNETPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAKLIEYLLG 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKVYQHCSTR 177
E +R +++D R ++L E++ K EA N R +L++ L P VY+
Sbjct: 182 EGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYVYEEFCYP 237
Query: 178 RVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLR 237
R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H GN+++ R
Sbjct: 238 RLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISR 297
Query: 238 DG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMGATDKDID 290
D IG LD GI+G +S K + A + FLA +Y +A IE G + D
Sbjct: 298 DHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESGWVSEKTD 354
Query: 291 AKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSE 350
+AF + ++ + + N +DE + L+L R +
Sbjct: 355 LQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLLELFRTAR 391
Query: 351 SYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ + + LL K LLY + R L P +++ Q
Sbjct: 392 HFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A6WIE7|UBIB_SHEB8 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS185) GN=ubiB PE=3 SV=1
Length = 549
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 201/395 (50%), Gaps = 42/395 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVY 58
+G YIKLGQ +++ L E+ E D+ P PF G + R +E +L PIES++
Sbjct: 64 LGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELKAPIESLF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
+ + TP+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+++E+L
Sbjct: 122 DDFNETPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAKLIEYLLG 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKVYQHCSTR 177
E +R +++D R ++L E++ K EA N R +L++ L P VY+
Sbjct: 182 EGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYVYEEFCYP 237
Query: 178 RVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLR 237
R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H GN+++ R
Sbjct: 238 RLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISR 297
Query: 238 DG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMGATDKDID 290
D IG LD GI+G +S K + A + FLA +Y +A IE G + D
Sbjct: 298 DHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESGWVSEKTD 354
Query: 291 AKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSE 350
+AF + ++ + + N +DE + L+L R +
Sbjct: 355 LQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLLELFRTAR 391
Query: 351 SYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ + + LL K LLY + R L P +++ Q
Sbjct: 392 HFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 191/391 (48%), Gaps = 34/391 (8%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G +IK GQ +++ L PP+ EE DR P +R + LG IE++++
Sbjct: 64 LGPIFIKFGQMLSTRRDLLPPDIAEELALLQDRVPPFCGQAARRQIEASLGCTIETLFDD 123
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
D TP+ASAS+AQVH ARL+ + ++VIKV++P IE V+ ADL + +AR++ P+
Sbjct: 124 FDETPLASASIAQVHTARLKENGREIVIKVIRPDIEPVIEADLRLMQALARLVARFVPQS 183
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVY-QHCSTRRV 179
R + +V++ R+++L+E++ +EAAN RR + P+V+ +HC +V
Sbjct: 184 GRLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTG---SEALYVPEVFTEHCRE-QV 239
Query: 180 LTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG 239
L MER+YG+P++D+ ++ + ++ + + V+F + FHAD+H GN+++ +
Sbjct: 240 LVMERIYGIPVSDIAALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVSYEH 299
Query: 240 -----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAF 294
IG +D GIVG ++ + + + +Y +A +E G D F
Sbjct: 300 PENPLWIG-IDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTKVDEF 358
Query: 295 ARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGL 354
+ + I E + E + L+L + + +
Sbjct: 359 EFAIRTVLEPIFEKP-----------------------LSEISFGHVLLNLFNTARRFNM 395
Query: 355 KFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ + LL K LLY + R L P +++ Q
Sbjct: 396 QVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQ 426
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 187/389 (48%), Gaps = 34/389 (8%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVY 58
+G ++K GQ +++ L PPEY +E DR P PF G+I R ++E LGR +E ++
Sbjct: 59 LGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVP--PFDGDIARQVVERSLGRKVEELF 116
Query: 59 EYVDPTPIASASVAQVHGARLR----GSQDDVVIKVLKPGIEDVLVADLNFVYVVARILE 114
D P+ASASVAQVH A LR G +V +KVL+PGI V+ DL+ + +A +E
Sbjct: 117 VDFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLAGWVE 176
Query: 115 FLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHC 174
L + R +V + + + +E+D EAAN RR + + P+V+
Sbjct: 177 KLFADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDML---IVPEVFYDY 233
Query: 175 STRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLW 234
S+R VLT+E ++G+P+ ++ + + + ++F + FHAD+H GN++
Sbjct: 234 SSREVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGNIF 293
Query: 235 LLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAF 294
+ DGR LDFGIVG ++ + + + +Y +A+A IE G +D A+
Sbjct: 294 VAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESGWVPRDTRAEEL 353
Query: 295 ARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGL 354
+ + I E + +S +V+ L L S + +
Sbjct: 354 EAAVRTVCEPIFE--------------KPLSEISFGMVL---------LRLFETSRRFNV 390
Query: 355 KFPREFALLLKQLLYFDRYTRLLAPNMNM 383
+ + LL K LL + R L P +++
Sbjct: 391 EIQPQLVLLQKTLLNIEGLGRQLDPELDL 419
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/386 (25%), Positives = 186/386 (48%), Gaps = 30/386 (7%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G T+IK+GQ ++ LFP EYVEE D PA + + + E+LG+PI +Y
Sbjct: 95 LGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGKPIAKLYRS 154
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
DP P+A+AS+ QVH A+L + +DVV+KV +PG++ + DL + +A+ + +P+
Sbjct: 155 FDPVPLAAASLGQVHKAQLH-TGEDVVVKVQRPGLKKLFTIDLAILKKIAQYFQN-HPKW 212
Query: 121 SRT-SMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRV 179
R GI ++ + + +E D+ +E + ++FRR + P+VY ++ ++
Sbjct: 213 GRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWVK---VPRVYWRYTSTQI 269
Query: 180 LTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRD- 238
LT+E L G+ ++ D++ + + + LL FHAD H GNL + +
Sbjct: 270 LTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSPEA 329
Query: 239 GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFARDL 298
G + F DFG++G I+P T + L +A + E + ++L+ +GA + D R +
Sbjct: 330 GELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETEDMGPIRRSV 389
Query: 299 EKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGLKFPR 358
+ + + + E E+ + + DL ++ +FP
Sbjct: 390 QFLLDNFMDKPFE-----------------------EQSITKISDDLYEIAYDQPFRFPA 426
Query: 359 EFALLLKQLLYFDRYTRLLAPNMNML 384
F +++ + + L P+ N +
Sbjct: 427 TFTFVMRAFSTLEGVGKGLDPDFNFM 452
>sp|A3D9F4|UBIB_SHEB5 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=ubiB PE=3 SV=1
Length = 549
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 200/395 (50%), Gaps = 42/395 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVY 58
+G YIKLGQ +++ L E+ E D+ P PF G + R +E +L PIES++
Sbjct: 64 LGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELKAPIESLF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
+ + P+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+++E+L
Sbjct: 122 DDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAKLIEYLLG 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKVYQHCSTR 177
E +R +++D R ++L E++ K EA N R +L++ L P VY+
Sbjct: 182 EGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYVYEEFCYP 237
Query: 178 RVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLR 237
R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H GN+++ R
Sbjct: 238 RLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISR 297
Query: 238 DG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMGATDKDID 290
D IG LD GI+G +S K + A + FLA +Y +A IE G + D
Sbjct: 298 DHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESGWVSEKTD 354
Query: 291 AKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSE 350
+AF + ++ + + N +DE + L+L R +
Sbjct: 355 LQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLLELFRTAR 391
Query: 351 SYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ + + LL K LLY + R L P +++ Q
Sbjct: 392 HFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|B8E6B4|UBIB_SHEB2 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS223) GN=ubiB PE=3 SV=1
Length = 549
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 200/395 (50%), Gaps = 42/395 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVY 58
+G YIKLGQ +++ L E+ E D+ P PF G + R +E +L PIES++
Sbjct: 64 LGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVP--PFDGALARQAIEAELKAPIESLF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
+ + P+ASAS++QVH A L+ + DVV+KVL+P +E + ADL + A+++E+L
Sbjct: 122 DDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTAKLIEYLLG 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKVYQHCSTR 177
E +R +++D R ++L E++ K EA N R +L++ L P VY+
Sbjct: 182 EGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDAL----YVPYVYEEFCYP 237
Query: 178 RVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLR 237
R++ MER+YG+ ++D+ ++ + ++ + + ++F + FHAD+H GN+++ R
Sbjct: 238 RLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISR 297
Query: 238 DG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMGATDKDID 290
D IG LD GI+G +S K + A + FLA +Y +A IE G + D
Sbjct: 298 DHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESGWVSEKTD 354
Query: 291 AKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSE 350
+AF + ++ + + N +DE + L+L R +
Sbjct: 355 LQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLLELFRTAR 391
Query: 351 SYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ + + LL K LLY + R L P +++ Q
Sbjct: 392 HFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A1RP80|UBIB_SHESW Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain W3-18-1) GN=ubiB PE=3 SV=1
Length = 549
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 199/395 (50%), Gaps = 42/395 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVY 58
+G YIKLGQ +++ L E+ E D+ P PF G + R +E +L IES++
Sbjct: 64 LGPVYIKLGQMLSTRRDLLSDEWAIELAMLQDKVP--PFDGVLARKAIEAELKASIESLF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
+ D TP+ASAS++QVH A L+ + VV+KVL+P +E ++ADL + A +LE+
Sbjct: 122 DDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKILADLQLMSQTANLLEYFLG 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKVYQHCSTR 177
E +R +++D R ++L E++ K EA N R +L + L P VY+
Sbjct: 182 EGNRLRPAEVIEDYRVTILGELNLKLEALNAIKLRNNFLNSDAL----YVPYVYEEFCYP 237
Query: 178 RVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLR 237
R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H GN+++ R
Sbjct: 238 RLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISR 297
Query: 238 DG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMGATDKDID 290
D IG LD GI+G +S K + A + FLA +Y +A IE G + D
Sbjct: 298 DHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESGWVSEKTD 354
Query: 291 AKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSE 350
+AF + ++ + + N +DE + L+L R +
Sbjct: 355 LQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLLELFRTAR 391
Query: 351 SYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
S+ + + LL K LLY + R L P +++ Q
Sbjct: 392 SFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A4Y2Q3|UBIB_SHEPC Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=ubiB PE=3
SV=1
Length = 549
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 199/395 (50%), Gaps = 42/395 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVY 58
+G YIKLGQ +++ L E+ E D+ P PF G + R +E +L IES++
Sbjct: 64 LGPVYIKLGQMLSTRRDLLSDEWAIELAMLQDKVP--PFDGVLARKAIEAELKASIESLF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
+ D TP+ASAS++QVH A L+ + VV+KVL+P +E ++ADL + A +LE+
Sbjct: 122 DDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKILADLQLMSQTANLLEYFLG 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKVYQHCSTR 177
E +R +++D R ++L E++ K EA N R +L + L P VY+
Sbjct: 182 EGNRLRPAEVIEDYRVTILGELNLKLEALNAIKLRNNFLNSDAL----YVPYVYEEFCYP 237
Query: 178 RVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLR 237
R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H GN+++ R
Sbjct: 238 RLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISR 297
Query: 238 DG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMGATDKDID 290
D IG LD GI+G +S K + A + FLA +Y +A IE G + D
Sbjct: 298 DHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESGWVSEKTD 354
Query: 291 AKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSE 350
+AF + ++ + + N +DE + L+L R +
Sbjct: 355 LQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLLELFRTAR 391
Query: 351 SYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
S+ + + LL K LLY + R L P +++ Q
Sbjct: 392 SFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/389 (26%), Positives = 185/389 (47%), Gaps = 35/389 (8%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G +IK GQ +++ L PP+ +E D+ P P + + LG P+ ++
Sbjct: 66 LGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQLGAPVSQLFAR 125
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
D P+ASASVAQVH A+L+ S ++VV+KV++PG++ V+ DL +++++ARI E + +
Sbjct: 126 FDSQPLASASVAQVHAAQLK-SGEEVVVKVVRPGLKPVIRQDLAWLFLLARIAERASADA 184
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVL 180
R V +V D +++ +E+D +EAAN RR E L P+VY +VL
Sbjct: 185 RRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLL---YVPQVYWDLCRHQVL 241
Query: 181 TMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDGR 240
MER+YGVP+TDL +++ + + + ++F + FHAD+H GN+++ R
Sbjct: 242 VMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGNIFV--STR 299
Query: 241 IGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAF 294
+ +D GI+G ++ + + L + +Y +A I+ G D F
Sbjct: 300 TPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPADTKVNEF 359
Query: 295 ARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGL 354
+ + I E + + L L L + + + +
Sbjct: 360 EAAIRTVCEPIFEKPLKDI-----------------------SFGQLLLRLFQTARRFNM 396
Query: 355 KFPREFALLLKQLLYFDRYTRLLAPNMNM 383
+ + LL K LL + R L P++++
Sbjct: 397 EVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 188/390 (48%), Gaps = 33/390 (8%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLED-LGRPIESVYE 59
+G +IK GQ +++ L PP+ EE DR P+ G++ R +E LG+PIE+++
Sbjct: 64 LGPVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFD-GQLAREQIEQALGQPIEALFA 122
Query: 60 YVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPE 119
D P+ASASVAQVH ARL+ + ++VIKV++P I+ V+ D+ + + A+I+ FL P
Sbjct: 123 DFDQQPLASASVAQVHTARLKENNAEIVIKVIRPDIKPVINDDIRLMRLCAKIVAFLIPN 182
Query: 120 LSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRV 179
+R V ++++ R ++L+E++ EAAN RR E + P VY V
Sbjct: 183 -NRLRPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFEN---SSHLYVPLVYSDYCRESV 238
Query: 180 LTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWL---- 235
L MER+YG+P++D ++ + + + + V+F + FHAD+H GN+++
Sbjct: 239 LVMERIYGIPVSDRAALEANGTDLKLLAERGVEVFFTQVFRDSFFHADMHPGNVFVSYEH 298
Query: 236 LRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFA 295
D + +D GIVG ++ + + + +Y +A ++ G D + F
Sbjct: 299 PHDPQWIGIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAELHVQSGWVPPDTKVEEFE 358
Query: 296 RDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGLK 355
L + E + A + E + L+L + + +
Sbjct: 359 SALRTVL--------EPIFAKP---------------LAEISFGQVLLNLFNTARRFNMH 395
Query: 356 FPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ LL K LLY + R L P +++ Q
Sbjct: 396 VQPQLVLLQKTLLYIEGLGRHLYPQLDLWQ 425
>sp|Q0HE99|UBIB_SHESM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain MR-4) GN=ubiB PE=3 SV=1
Length = 549
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 200/395 (50%), Gaps = 42/395 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVY 58
+G YIKLGQ +++ L E+ E D+ P PF G + R +E +L PIES +
Sbjct: 64 LGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVP--PFDGALARQAIETELKAPIESFF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
+ + TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+I+++L
Sbjct: 122 DDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQADLLLMSQTAKIIDYLLG 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKVYQHCSTR 177
E +R +++D R ++L E++ K EA N R +L++ L P VY+
Sbjct: 182 EGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDAL----YIPYVYEEFCYP 237
Query: 178 RVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLR 237
R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H GN+++ R
Sbjct: 238 RLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISR 297
Query: 238 DG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMGATDKDID 290
D IG LD GI+G +S K + A + FLA +Y +A IE G + D
Sbjct: 298 DHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESGWVSEKTD 354
Query: 291 AKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSE 350
+AF + ++ + + N +DE + L+L R +
Sbjct: 355 LQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLLELFRTAR 391
Query: 351 SYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ + + LL K LLY + R L P +++ Q
Sbjct: 392 HFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A0L1M6|UBIB_SHESA Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain ANA-3) GN=ubiB PE=3 SV=1
Length = 549
Score = 152 bits (383), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 200/395 (50%), Gaps = 42/395 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVY 58
+G YIKLGQ +++ L E+ E D+ P PF G + R +E +L PIES +
Sbjct: 64 LGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVP--PFDGALARQAIEAELKAPIESYF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
+ D TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+++++L
Sbjct: 122 DDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVETKIQADLLLMSQTAKVIDYLLG 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKVYQHCSTR 177
E +R +++D R ++L E++ K EA N R +L++ L P VY+
Sbjct: 182 EGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDAL----YIPYVYEEFCYP 237
Query: 178 RVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLR 237
R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H GN+++ R
Sbjct: 238 RLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISR 297
Query: 238 DG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMGATDKDID 290
+ IG LD GI+G +S K + A + FLA +Y +A IE G + D
Sbjct: 298 EHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESGWVSEKTD 354
Query: 291 AKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSE 350
+AF + ++ + + N +DE + L+L R +
Sbjct: 355 LQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLLELFRTAR 391
Query: 351 SYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ + + LL K LLY + R L P +++ Q
Sbjct: 392 HFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|Q8PDW1|UBIB_XANCP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=ubiB PE=3 SV=1
Length = 557
Score = 151 bits (382), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 193/413 (46%), Gaps = 44/413 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LGRPIESVY 58
+G ++K GQ +++ L PP+ EE DR PF GE R ++E LG P+ +
Sbjct: 62 LGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVK--PFDGEAARLIVERALGLPVSVAF 119
Query: 59 EYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILE 114
D TP+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++ +A ++E
Sbjct: 120 AAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSLATLVE 179
Query: 115 FLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHC 174
+P + +V +I ++ E+D ++E AN RR+ E + P+V
Sbjct: 180 RTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYVPEVIWSH 236
Query: 175 STRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLW 234
+ R LT+ER+YG+P D+ + + + + V++ + FHAD HAGN+W
Sbjct: 237 TAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIW 296
Query: 235 LLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 288
+ D R LDFGI+G++S + + +I ++Y MA +E G +
Sbjct: 297 VDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSN 356
Query: 289 IDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMNALFLDLL 346
+ I EL+ A AR T +S E + + + L
Sbjct: 357 V--------------RIDELE-----AAARSVCEPYFTRPLS------EISLAEVLIKLF 391
Query: 347 RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 399
RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 392 RVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|Q4V052|UBIB_XANC8 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=ubiB PE=3
SV=1
Length = 557
Score = 151 bits (382), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 193/413 (46%), Gaps = 44/413 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LGRPIESVY 58
+G ++K GQ +++ L PP+ EE DR PF GE R ++E LG P+ +
Sbjct: 62 LGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVK--PFDGEAARLIVERALGLPVSVAF 119
Query: 59 EYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILE 114
D TP+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++ +A ++E
Sbjct: 120 AAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSLATLVE 179
Query: 115 FLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHC 174
+P + +V +I ++ E+D ++E AN RR+ E + P+V
Sbjct: 180 RTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYVPEVIWSH 236
Query: 175 STRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLW 234
+ R LT+ER+YG+P D+ + + + + V++ + FHAD HAGN+W
Sbjct: 237 TAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIW 296
Query: 235 LLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 288
+ D R LDFGI+G++S + + +I ++Y MA +E G +
Sbjct: 297 VDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSN 356
Query: 289 IDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMNALFLDLL 346
+ I EL+ A AR T +S E + + + L
Sbjct: 357 V--------------RIDELE-----AAARSVCEPYFTRPLS------EISLAEVLIKLF 391
Query: 347 RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 399
RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 392 RVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|Q0HZP9|UBIB_SHESR Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain MR-7) GN=ubiB PE=3 SV=1
Length = 549
Score = 151 bits (382), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 200/395 (50%), Gaps = 42/395 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVY 58
+G YIKLGQ +++ L E+ E D+ P PF G + R +E +L PIES +
Sbjct: 64 LGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVP--PFDGALARQAIEAELKAPIESFF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
+ + TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+++++L
Sbjct: 122 DDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQADLLLMSQTAKVIDYLLG 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKVYQHCSTR 177
E +R +++D R ++L E++ K EA N R +L++ L P VY+
Sbjct: 182 EGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDAL----YIPYVYEEFCYP 237
Query: 178 RVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLR 237
R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H GN+++ R
Sbjct: 238 RLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISR 297
Query: 238 DG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMGATDKDID 290
D IG LD GI+G +S K + A + FLA +Y +A IE G + D
Sbjct: 298 DHPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESGWVSEKTD 354
Query: 291 AKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSE 350
+AF + ++ + + N +DE + L+L R +
Sbjct: 355 LQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLLELFRTAR 391
Query: 351 SYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ + + LL K LLY + R L P +++ Q
Sbjct: 392 HFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|B0RLZ0|UBIB_XANCB Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain B100) GN=ubiB PE=3
SV=1
Length = 557
Score = 151 bits (382), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 193/413 (46%), Gaps = 44/413 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LGRPIESVY 58
+G ++K GQ +++ L PP+ EE DR PF GE R ++E LG P+ +
Sbjct: 62 LGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVK--PFDGEAARLIVERALGLPVSVAF 119
Query: 59 EYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILE 114
D TP+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++ +A ++E
Sbjct: 120 AAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSLATLVE 179
Query: 115 FLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHC 174
+P + +V +I ++ E+D ++E AN RR+ E + P+V
Sbjct: 180 RTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYVPEVIWSH 236
Query: 175 STRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLW 234
+ R LT+ER+YG+P D+ + + + + V++ + FHAD HAGN+W
Sbjct: 237 TAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIW 296
Query: 235 LLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 288
+ D R LDFGI+G++S + + +I ++Y MA +E G +
Sbjct: 297 VDSDPERCLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSN 356
Query: 289 IDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMNALFLDLL 346
+ I EL+ A AR T +S E + + + L
Sbjct: 357 V--------------RIDELE-----AAARSVCEPYFTRPLS------EISLAEVLIKLF 391
Query: 347 RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 399
RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 392 RVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 151 bits (381), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 109/386 (28%), Positives = 177/386 (45%), Gaps = 28/386 (7%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G ++IK GQ +A+ P + +Y+ E D P P + E+LG+P+E+++
Sbjct: 177 LGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQPLENIFSK 236
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
+ IA+AS+ QV+ A LR + +DV IKV +P IE ++ DL +A L + +
Sbjct: 237 ISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFLNGFSLQK 296
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVL 180
+ IV + E +LEE+D+ EA NIE F LE P VY++ RVL
Sbjct: 297 LGCNAELIVDEFGEKLLEELDYTLEARNIEDF---LENFKDDPTVKIPGVYKNLCGPRVL 353
Query: 181 TMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDGR 240
ME + G+ TD +I L ++ LL FH D H GN++ ++DGR
Sbjct: 354 VMEWIDGIRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMQDGR 413
Query: 241 IGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFARDLEK 300
I ++DFG V +S + + + E+Y MA+ +G KD D LE
Sbjct: 414 IAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSPIVPALEA 473
Query: 301 IFSSIQELDTELVVATARGTTT-NTTAVSANIVVDERQMNALFLDLLRVSESYGLKFPRE 359
I+ + + +G N +V+ Q N L D + ++ P
Sbjct: 474 IWQN----------SAGKGLADFNFRSVTG-------QFNKLVYD-------FPIRIPER 509
Query: 360 FALLLKQLLYFDRYTRLLAPNMNMLQ 385
F+L+++ LL + L P+ L+
Sbjct: 510 FSLVIRSLLTQEGICFTLKPDFKFLE 535
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/389 (27%), Positives = 184/389 (47%), Gaps = 35/389 (8%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLL--EDLGRPIESVY 58
+G +IK GQ +++ L P + +E DR P PF + L E LG ++ +
Sbjct: 67 LGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVP--PFNPQQSVALIEEQLGARVDEAF 124
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
D P+ASASVAQVH A+L+ + ++VV+KV++PG++ V+ DL ++Y+ AR+ E +
Sbjct: 125 ARFDSEPLASASVAQVHAAQLK-TGEEVVVKVVRPGLKAVIRQDLAWLYLFARLAERAST 183
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRR 178
E R +V +V D +++ +E+D +EAAN +R E L P++Y +
Sbjct: 184 EARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLL---YVPQIYWDWCRPK 240
Query: 179 VLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWL--- 235
VL MER+YGVP+TDL ++ + + + ++F + FHAD+H GN+++
Sbjct: 241 VLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPGNIFVSTR 300
Query: 236 -LRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAF 294
D + +D GIVG ++P+ + L + +Y +A I+ G D F
Sbjct: 301 QPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSGWVPADTQVNEF 360
Query: 295 ARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGL 354
+ + I E + + L L L + + + +
Sbjct: 361 EAAIRTVCEPIFEKPLKDI-----------------------SFGQLLLRLFQTARRFNM 397
Query: 355 KFPREFALLLKQLLYFDRYTRLLAPNMNM 383
+ + LL K LL + R L P +++
Sbjct: 398 EVQPQLVLLQKTLLNIEGLGRQLYPELDL 426
>sp|A3QIE3|UBIB_SHELP Probable ubiquinone biosynthesis protein UbiB OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=ubiB PE=3 SV=1
Length = 549
Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 194/393 (49%), Gaps = 38/393 (9%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVY 58
+G YIK GQ +++ L E+ EE DR P PF I R +E +LG PIE+ +
Sbjct: 64 LGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVP--PFDSAIARAQIEAELGAPIETYF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
+ D TP+ASAS++QVH A L+ + ++VV+KVL+P +E+ + ADL + A++LE L
Sbjct: 122 DNFDDTPLASASISQVHTATLKSNGEEVVLKVLRPNVEEKVHADLLLMTQSAQVLETLLG 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKVYQHCSTR 177
+R +V+D R ++ E++ K EA N R ++++ L PK+Y+
Sbjct: 182 HGNRLRPAEVVEDYRTTIEGELNLKLEALNAIKLRNNFIDSGAL----YIPKMYEEFCFT 237
Query: 178 RVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLR 237
R++ MER+YGVP++D ++ + ++ + + ++F + FHAD+H GN+++
Sbjct: 238 RLIVMERIYGVPVSDRAALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNIFVST 297
Query: 238 DG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAK 292
+ IG LD GI+G ++ + + + +Y +A IE G D D
Sbjct: 298 EHPEDPFYIG-LDCGIMGTLTEQDKRYLAENFLAFFNRDYTRIAQLYIESGWVAADTDLV 356
Query: 293 AFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESY 352
AF + ++ + + N +DE + L+L R + +
Sbjct: 357 AFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLLELFRTARRF 393
Query: 353 GLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ + LL K LLY + R L P +++ Q
Sbjct: 394 DMVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|Q8E9R5|UBIB_SHEON Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
oneidensis (strain MR-1) GN=ubiB PE=3 SV=1
Length = 549
Score = 148 bits (374), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 113/395 (28%), Positives = 200/395 (50%), Gaps = 42/395 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVY 58
+G YIKLGQ +++ L E+ E D+ P PF G + R +E +L PIE+ +
Sbjct: 64 LGPVYIKLGQMLSTRRDLLSDEWATELAMLQDKVP--PFDGALARLAIEAELKAPIETFF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
+ + TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + A+++++L
Sbjct: 122 DDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVETKIQADLLLMSQTAKVIDYLLG 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKVYQHCSTR 177
E +R +++D R ++L E++ K EA N R ++++ L P VY+
Sbjct: 182 EGNRLRPAEVIEDYRVTILGELNLKLEALNAIKLRNNFIDSDAL----YIPYVYEEFCYP 237
Query: 178 RVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLR 237
R++ MER+YG+P++D+ ++ + ++ + + ++F + FHAD+H GN+++ R
Sbjct: 238 RLMVMERIYGIPVSDIVALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISR 297
Query: 238 DG-----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMGATDKDID 290
+ IG LD GI+G +S K + A + FLA +Y +A IE G + D
Sbjct: 298 ENPENPYYIG-LDCGIMGTLSEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESGWVSEKTD 354
Query: 291 AKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSE 350
+AF + ++ + + N +DE + L+L R +
Sbjct: 355 LQAFEQAIKVVCEPM-----------------------FNKPLDEISFGHVLLELFRTAR 391
Query: 351 SYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ + + LL K LLY + R L P +++ Q
Sbjct: 392 HFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|Q9CKD4|UBIB_PASMU Probable ubiquinone biosynthesis protein UbiB OS=Pasteurella
multocida (strain Pm70) GN=ubiB PE=3 SV=1
Length = 527
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 196/398 (49%), Gaps = 43/398 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LGRPIESVY 58
+G +IKLGQ +++ LFPP+ +E D+ PF G+I R +E LG P+E+ +
Sbjct: 64 LGPVWIKLGQMLSTRRDLFPPDIADELALLQDQVD--PFDGKIARAQIEKALGAPLETWF 121
Query: 59 EYVDPTPIASASVAQVHGARL---------RGSQDDVVIKVLKPGIEDVLVADLNFVYVV 109
+ + T +ASAS+AQVH A+ R + +VV+KVL+P I+ ++ ADL+ +Y V
Sbjct: 122 DEFNETALASASIAQVHTAKFKQNAPHLENRLAGKEVVLKVLRPNIQQMINADLSLMYKV 181
Query: 110 ARILEFLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPK 169
A + + E R V +V++ +++ +E+D ++E AN R E + P+
Sbjct: 182 ASWIPRIKAEGRRLRPVEVVREYEKNLRDELDLRREMANAIQLRANFENSPML---YIPE 238
Query: 170 VYQHCSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVH 229
+Y+ + V+ MER+YG+P+++++ + + ++ + + V+F + FHAD+H
Sbjct: 239 MYKQFCHQTVIVMERIYGIPVSNIEELHANGTNMKLLAERGVQVFFTQVFRDSFFHADMH 298
Query: 230 AGNLWLLR----DGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGAT 285
GN+++ R D + +D GIVGR++ + + +Y +A + G T
Sbjct: 299 PGNIFVNRAHPDDPQYIGIDCGIVGRLNDHDKRYLAESFVAFFNRDYRRVAEMHVASGWT 358
Query: 286 DKDIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDL 345
KD + D E+ F + E + A + E + L+L
Sbjct: 359 PKDTNID----DFEQAFREV----CEPIFAKP---------------LSEISFGHVLLNL 395
Query: 346 LRVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNM 383
V+ Y ++ + LL K LLY + R L P +++
Sbjct: 396 FNVAREYNMEVQPQLVLLQKTLLYIEGLGRQLYPQLDL 433
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 162/313 (51%), Gaps = 12/313 (3%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G +IK GQ +++ L P + E D+ P P + + E LG IE V+
Sbjct: 67 LGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFAR 126
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
+ P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+ E ++ E
Sbjct: 127 FEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEA 185
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVL 180
R V +V D +++++E+D +EAAN RR E L P+VY +VL
Sbjct: 186 RRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWDWCRPKVL 242
Query: 181 TMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDGR 240
MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+++ R
Sbjct: 243 VMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFV--STR 300
Query: 241 IGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAF 294
+ +D GIVG ++ + + L + +Y +A I+ G + F
Sbjct: 301 APWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPAETKVNDF 360
Query: 295 ARDLEKIFSSIQE 307
+ + I E
Sbjct: 361 EAAIRTVCEPIFE 373
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 162/313 (51%), Gaps = 12/313 (3%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G +IK GQ +++ L P + E D+ P P + + E LG IE V+
Sbjct: 67 LGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFAR 126
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
+ P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+ E ++ E
Sbjct: 127 FEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEA 185
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVL 180
R V +V D +++++E+D +EAAN RR E L P+VY +VL
Sbjct: 186 RRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWDWCRPKVL 242
Query: 181 TMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDGR 240
MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+++ R
Sbjct: 243 VMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFV--STR 300
Query: 241 IGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAF 294
+ +D GIVG ++ + + L + +Y +A I+ G + F
Sbjct: 301 APWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPAETKVNDF 360
Query: 295 ARDLEKIFSSIQE 307
+ + I E
Sbjct: 361 EAAIRTVCEPIFE 373
>sp|Q8PQT0|UBIB_XANAC Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=ubiB PE=3 SV=1
Length = 557
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 190/411 (46%), Gaps = 40/411 (9%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LGRPIESVY 58
+G ++K GQ +++ L P + EE DR PF G+ R ++E LG P+ +
Sbjct: 62 LGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGQAARLIVEAALGLPVSVAF 119
Query: 59 EYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILE 114
D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++ +A ++E
Sbjct: 120 ASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSLATLVE 179
Query: 115 FLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHC 174
+P + +V +I ++ E+D ++E AN RR+ E + P+V
Sbjct: 180 RTHPRADKIRPREVVAEIEGTLAAELDLQREGANASVLRRFWEG---SDDLYVPEVIWSH 236
Query: 175 STRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLW 234
+ R LT+ER+YG+P D+ + + + + V++ + FHAD HAGN+W
Sbjct: 237 TAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIW 296
Query: 235 LLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 288
+ D R LDFGI+G++S + + +I ++Y MA +E G +
Sbjct: 297 VDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSN 356
Query: 289 IDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRV 348
+ I EL+ A AR N + E + + + L RV
Sbjct: 357 V--------------RIDELE-----AAARSVCEPYF----NRPLSEISLAQVLIKLFRV 393
Query: 349 SESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 399
++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 394 AQRYELTLQPQLILLQKTLLNIEGVGRQLDPRLDIWAVARPVLERILRERY 444
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/394 (27%), Positives = 190/394 (48%), Gaps = 45/394 (11%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G +IK GQ +++ L P + E D+ P P + + E LG IE V+
Sbjct: 67 LGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFAR 126
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
+ P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+ E ++ E
Sbjct: 127 FEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEA 185
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVL 180
R V +V D +++++E+D +EAAN RR E L P+VY +VL
Sbjct: 186 RRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWDWCRPKVL 242
Query: 181 TMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDGR 240
MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+++ R
Sbjct: 243 VMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFV--STR 300
Query: 241 IGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAF 294
+ +D GIVG S+ E+ + +A LI F
Sbjct: 301 APWSPQYIAVDCGIVG---------------SLTDEDQDYLARNLIAF-----------F 334
Query: 295 ARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMN-----ALFLDLLRVS 349
RD K+ + +D+ V A + + + E+ + + L L + +
Sbjct: 335 KRDYRKV--AQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLFQTA 392
Query: 350 ESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNM 383
+ ++ + LL K LL + R L P +++
Sbjct: 393 RRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDL 426
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 162/313 (51%), Gaps = 12/313 (3%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G +IK GQ +++ L P + E D+ P P + + E LG IE V+
Sbjct: 67 LGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFAR 126
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
+ P+ASASVAQVH ARL+ S ++VV+KV++P +E V+ +D+ +++++AR+ E ++ E
Sbjct: 127 FEREPLASASVAQVHAARLK-SGEEVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEA 185
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVL 180
R V +V D +++++E+D +EAAN RR E L P+VY +VL
Sbjct: 186 RRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLL---YVPQVYWDWCRPKVL 242
Query: 181 TMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDGR 240
MER+YG+P+TDL+++ + + + ++F + FHAD+H GN+++ R
Sbjct: 243 VMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFV--STR 300
Query: 241 IGF------LDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAF 294
+ +D GIVG ++ + + L + +Y +A I+ G + F
Sbjct: 301 APWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPAETKVNDF 360
Query: 295 ARDLEKIFSSIQE 307
+ + I E
Sbjct: 361 EAAIRTVCEPIFE 373
>sp|Q088I0|UBIB_SHEFN Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
frigidimarina (strain NCIMB 400) GN=ubiB PE=3 SV=1
Length = 549
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/392 (27%), Positives = 193/392 (49%), Gaps = 36/392 (9%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G YIKLGQ +++ L E+ + DR P + + +LG PI + ++
Sbjct: 64 LGPVYIKLGQMLSTRRDLLDDEWAYQLAMLQDRVPPFDSALAREAIEAELGAPIATYFDD 123
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
+ TP+ASAS++QVH A L+ + VV+KVL+P +E ++ADL + A +LE L +
Sbjct: 124 FNDTPLASASISQVHTATLKSNGKAVVLKVLRPNVEQQILADLQLMTQTANLLETLLGDG 183
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVL 180
+R +++D R ++L E++ K EA N R +G + P VY+ S +R++
Sbjct: 184 NRLRPAEVIEDYRTTILGELNLKLEALNAIKLRNNF--LG-SNSLYVPFVYEEHSYQRLM 240
Query: 181 TMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG- 239
MER+YG+P++D +++ + ++ + + ++F + FHAD+H GN+++ R+
Sbjct: 241 VMERIYGIPVSDTEALRAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISREHP 300
Query: 240 ----RIGFLDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKA 293
IG LD GI+G ++ K + A + FLA +Y +A IE G + D A
Sbjct: 301 DDPFYIG-LDCGIMGTLTEVDKRYLAEN-FLA-FFNRDYHRIAQLYIESGWVSEHTDIIA 357
Query: 294 FARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYG 353
F + ++ + + N +DE + L+L R + +
Sbjct: 358 FEQAVKVVCEPM-----------------------FNKPLDEISFGHVLLELFRTARHFD 394
Query: 354 LKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ + LL K LLY + R L P +++ Q
Sbjct: 395 IVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 154/311 (49%), Gaps = 8/311 (2%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G ++K GQ +++ L P + E + DR P P + + + + LG P+ ++
Sbjct: 62 LGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARGIIEKSLGAPVSELFAE 121
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
P P+ASASVAQVH A L Q VV+KVL+PGIE V+ DL +Y++A +LE E
Sbjct: 122 FSPDPMASASVAQVHAATLPNGQ-KVVVKVLRPGIEKVIRQDLGLMYLMAGLLEKYWSEG 180
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVL 180
R V +V D ++ +E+D ++EAAN RR E L P + + + VL
Sbjct: 181 KRLHPVEVVADYDSTIHDELDLQREAANASQLRRNFENSPLI---YIPFIDWDYTRKSVL 237
Query: 181 TMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWL----L 236
MER++G+P+ D+ ++ + + ++F + FHAD+H GN+++
Sbjct: 238 VMERIHGIPIADVPALEKAGVNMRVLAEKGVEIFFTQVFRDSFFHADMHPGNIFVDVSNP 297
Query: 237 RDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFAR 296
D + +DFGIVG ++P + + L + +Y +A I+ G + F
Sbjct: 298 ADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDYRQVAQLHIQSGWVPPETRVNEFEA 357
Query: 297 DLEKIFSSIQE 307
+ + I E
Sbjct: 358 AIRTVCEPIFE 368
>sp|A1SAK0|UBIB_SHEAM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=ubiB PE=3
SV=1
Length = 549
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 191/391 (48%), Gaps = 34/391 (8%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G YIK GQ +++ L E+ +E DR PA + + +L PI+S+++
Sbjct: 64 LGPVYIKFGQMLSTRRDLLSDEWAQELSMLQDRVPAFDSALAREAIEAELKAPIDSLFDD 123
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
D TP+ASAS++QVH A L+ + VV+KVL+P +E + ADL + VA + L E
Sbjct: 124 FDDTPLASASISQVHTATLKSNGQQVVLKVLRPNVEANIKADLELMLQVATWVNRLLGEG 183
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFR-RYLEAMGLTRQATAPKVYQHCSTRRV 179
+R V +V+D + ++L E++ K EA N R +L++ L P VY+ R+
Sbjct: 184 NRLRPVEVVEDYQNTILGELNLKLEALNATKLRNNFLDSDAL----YIPYVYEELCHPRL 239
Query: 180 LTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG 239
+ MER+ G+P++D++++++ ++ + + ++F + FHAD+H GN+++ R+
Sbjct: 240 MVMERIDGIPVSDIEALNAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNIFISREH 299
Query: 240 -----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAF 294
IG LD GI+G ++ + + + +Y +A +E G D D AF
Sbjct: 300 PENPFYIG-LDCGIMGSLNEEDKRYLAENFLAFFNRDYHRIAQLYVESGWVSADTDILAF 358
Query: 295 ARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGL 354
+ ++ + + N ++E + L+L R + + +
Sbjct: 359 EQAVKLVCEPM-----------------------FNKPLNEISFGHVLLELFRTARRFDI 395
Query: 355 KFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ LL K LLY + R L P +++ Q
Sbjct: 396 VVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQ 426
>sp|B8F6K1|UBIB_HAEPS Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus
parasuis serovar 5 (strain SH0165) GN=ubiB PE=3 SV=1
Length = 549
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/395 (28%), Positives = 191/395 (48%), Gaps = 38/395 (9%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLED-LGRPIESVYE 59
+G +IKLGQ +++ LF PE ++ D A G++ R L+E+ LG +E ++
Sbjct: 64 LGPVWIKLGQMLSTRRDLFEPELADQLALLQDSVEAFD-GKLARRLIEEALGDKLEKWFD 122
Query: 60 YVDPTPIASASVAQVHGARLRGSQ----DDVVIKVLKPGIEDVLVADLNFVYVVARILEF 115
D T +ASAS+AQVH A+ +Q +VV+KVL+P IE V+ DL +Y +A +
Sbjct: 123 DFDETALASASIAQVHIAKFNQNQPLAGKEVVLKVLRPEIERVIKDDLALMYRLASWIPR 182
Query: 116 LNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCS 175
LN E R V +V++ +++L+E+D +KE N R E + P++YQ
Sbjct: 183 LNKEGRRLRPVEVVREYEKTLLDELDLRKEMVNAIRLRNNFEN---SEMLYVPEMYQEFC 239
Query: 176 TRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWL 235
+ V+ MER+YG+P+ ++D + + + + + V+F + FHAD+H GN+++
Sbjct: 240 HKNVIVMERIYGIPVANIDELKANGTDMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFV 299
Query: 236 LRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDID 290
+ IG +D GIVG ++ + + +Y +A +E G T D D
Sbjct: 300 NPNHPENPQYIG-IDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVALMHVESGWTPADTD 358
Query: 291 AKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSE 350
AF E+ F + E + A + E + L+L V+
Sbjct: 359 IDAF----EEAFREV----CEPIFAKP---------------LSEISFGHVLLNLFTVAR 395
Query: 351 SYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ ++ + LL K LLY + R + P +++ Q
Sbjct: 396 KFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQ 430
>sp|Q5H616|UBIB_XANOR Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain KACC10331 / KXO85) GN=ubiB PE=3 SV=1
Length = 557
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 191/413 (46%), Gaps = 44/413 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LGRPIESVY 58
+G ++K GQ +++ L P + EE DR PF GE R ++E LG P+ +
Sbjct: 62 LGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGEAARLIVERALGLPVSVAF 119
Query: 59 EYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILE 114
D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++ +A ++E
Sbjct: 120 ASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSLATLVE 179
Query: 115 FLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHC 174
+P + +V +I ++ E+D ++E AN RR+ E + P+V
Sbjct: 180 RTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYVPEVIWSH 236
Query: 175 STRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLW 234
+ R LT+ER+YG+P D+ + + + + V++ + FHAD HAGN+W
Sbjct: 237 TAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIW 296
Query: 235 LLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 288
+ D R LDFGI+G++S + + +I ++Y MA +E G +
Sbjct: 297 VDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSN 356
Query: 289 IDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMNALFLDLL 346
+ I EL+ A AR T +S E + + + L
Sbjct: 357 V--------------RIDELE-----AAARSVCEPYFTRPLS------EISLAQVLIKLF 391
Query: 347 RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 399
RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 392 RVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|B2ST34|UBIB_XANOP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain PXO99A) GN=ubiB PE=3 SV=1
Length = 557
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 191/413 (46%), Gaps = 44/413 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LGRPIESVY 58
+G ++K GQ +++ L P + EE DR PF GE R ++E LG P+ +
Sbjct: 62 LGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGEAARLIVERALGLPVSVAF 119
Query: 59 EYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILE 114
D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++ +A ++E
Sbjct: 120 ASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSLATLVE 179
Query: 115 FLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHC 174
+P + +V +I ++ E+D ++E AN RR+ E + P+V
Sbjct: 180 RTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYVPEVIWSH 236
Query: 175 STRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLW 234
+ R LT+ER+YG+P D+ + + + + V++ + FHAD HAGN+W
Sbjct: 237 TAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIW 296
Query: 235 LLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 288
+ D R LDFGI+G++S + + +I ++Y MA +E G +
Sbjct: 297 VDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSN 356
Query: 289 IDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMNALFLDLL 346
+ I EL+ A AR T +S E + + + L
Sbjct: 357 V--------------RIDELE-----AAARSVCEPYFTRPLS------EISLAQVLIKLF 391
Query: 347 RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 399
RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 392 RVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|Q2P8Q0|UBIB_XANOM Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain MAFF 311018) GN=ubiB PE=3 SV=1
Length = 557
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 191/413 (46%), Gaps = 44/413 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LGRPIESVY 58
+G ++K GQ +++ L P + EE DR PF GE R ++E LG P+ +
Sbjct: 62 LGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGEAARLIVERALGLPVSVAF 119
Query: 59 EYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILE 114
D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++ +A ++E
Sbjct: 120 ASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSLATLVE 179
Query: 115 FLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHC 174
+P + +V +I ++ E+D ++E AN RR+ E + P+V
Sbjct: 180 RTHPRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEG---SDDLYVPEVIWSH 236
Query: 175 STRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLW 234
+ R LT+ER+YG+P D+ + + + + V++ + FHAD HAGN+W
Sbjct: 237 TAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIW 296
Query: 235 LLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 288
+ D R LDFGI+G++S + + +I ++Y MA +E G +
Sbjct: 297 VDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSN 356
Query: 289 IDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMNALFLDLL 346
+ I EL+ A AR T +S E + + + L
Sbjct: 357 V--------------RIDELE-----AAARSVCEPYFTRPLS------EISLAQVLIKLF 391
Query: 347 RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 399
RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 392 RVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/386 (25%), Positives = 183/386 (47%), Gaps = 32/386 (8%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G TYIK+GQ +++ P L PP +++E D+ P+ P R + E+LG P E +Y
Sbjct: 114 LGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELGAPAEEIYAE 173
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
+ P PIA+AS+ QV+ +L+ + + V +KV +P + + D +Y++ + + +
Sbjct: 174 LSPEPIAAASLGQVYKGKLK-TGEAVAVKVQRPDLVRRITLD---IYIMRSLSLWARRSV 229
Query: 121 S--RTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRR 178
R+ +V I ++ + EE+++ +EA N E F + G + P +Y + RR
Sbjct: 230 KRLRSDLVAITDELASRVFEEMNYYQEAINGEKF---AQLYGSLPEIYVPSIYWQYTGRR 286
Query: 179 VLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRD 238
VLTME + G+ LT++ +I + + + + LL FHAD H GNL + D
Sbjct: 287 VLTMEWVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLLAMAD 346
Query: 239 GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFARDL 298
GR+ +LDFG++ I P + + + +++S+A +++ D D K L
Sbjct: 347 GRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPIIPAL 406
Query: 299 EKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGLKFPR 358
++F G + N QM+A+ + + + P
Sbjct: 407 GQVF----------------GNALGASVAELNFKSITDQMSAMMYE-------FPFRVPA 443
Query: 359 EFALLLKQLLYFDRYTRLLAPNMNML 384
+AL+++ ++ + + PN +L
Sbjct: 444 YYALIIRSMVTLEGIAIGIDPNFKVL 469
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/407 (27%), Positives = 195/407 (47%), Gaps = 39/407 (9%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLL--EDLGRPIESVY 58
+G +IK GQ +++ L PP+ +E DR P PF K L E LG + V+
Sbjct: 67 LGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVP--PFDPKKAVALIEEQLGAKVGEVF 124
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
D P+ASASVAQVH ARL+ + ++VV+KV++PG++ V+ DL +++++A+ E +
Sbjct: 125 SRFDVEPLASASVAQVHAARLK-TGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAERASA 183
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRR 178
+ R V IV D +++ +E+D +EAAN RR E L P+VY +
Sbjct: 184 DARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEDSELM---YVPQVYWDLCRPK 240
Query: 179 VLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWL--L 236
VL MER+YGVP+TD+ +++ + + + V+F + FHAD+H GN+++ +
Sbjct: 241 VLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVSTV 300
Query: 237 RDGRIGF--LDFGIVGRISP--KTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAK 292
+ + +D GIVG ++ + + A +LF + +Y +A I+ G +
Sbjct: 301 KPWSPQYIAIDCGIVGSLTAEDQDYLARNLF--AFFKRDYRRVAQLHIDSGWVPANTKVN 358
Query: 293 AFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESY 352
F + + I E + + + + L + + +
Sbjct: 359 EFEAAIRTVCEPIFEKPLKDI-----------------------SFGQVLMRLFQTARRF 395
Query: 353 GLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 399
++ + LL K LL + R L P++++ + + R+RY
Sbjct: 396 NMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPYLERWMRDRY 442
>sp|Q3BZ34|UBIB_XANC5 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. vesicatoria (strain 85-10) GN=ubiB PE=3
SV=1
Length = 557
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 116/413 (28%), Positives = 191/413 (46%), Gaps = 44/413 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LGRPIESVY 58
+G ++K GQ +++ L P + EE DR PF G+ R ++E LG P+ +
Sbjct: 62 LGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVK--PFDGQAARLIVEAALGLPVSVAF 119
Query: 59 EYVDPTPIASASVAQVHGARL----RGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILE 114
D P+ASAS+AQVH A L G + +VV+KVL+P IE + AD+ ++ +A ++E
Sbjct: 120 ASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPDIERQIDADIALLHSLATLVE 179
Query: 115 FLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHC 174
+P + +V +I ++ E+D ++E AN RR+ E + P+V
Sbjct: 180 RTHPRADKIRPREVVAEIEGTLAAELDLQREGANASVLRRFWEG---SDDLYVPEVIWSH 236
Query: 175 STRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLW 234
+ R LT+ER+YG+P D+ + + + + V++ + FHAD HAGN+W
Sbjct: 237 TAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIW 296
Query: 235 LLRD------GRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKD 288
+ D R LDFGI+G++S + + +I ++Y MA +E G +
Sbjct: 297 VDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSN 356
Query: 289 IDAKAFARDLEKIFSSIQELDTELVVATARGTTTN--TTAVSANIVVDERQMNALFLDLL 346
+ I EL+ A AR T +S E + + + L
Sbjct: 357 V--------------RIDELE-----AAARSVCEPYFTRPLS------EISLAQVLIKLF 391
Query: 347 RVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQDQRISIVSNRRNRY 399
RV++ Y L + LL K LL + R L P +++ R + R RY
Sbjct: 392 RVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARPVLERILRERY 444
>sp|B5FF80|UBIB_VIBFM Probable ubiquinone biosynthesis protein UbiB OS=Vibrio fischeri
(strain MJ11) GN=ubiB PE=3 SV=1
Length = 544
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 194/390 (49%), Gaps = 36/390 (9%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVY 58
+G +IK GQ +++ LFPP ++ D+ PF G++ + +E +LG P+++ +
Sbjct: 64 LGPVWIKFGQMMSTRRDLFPPHLADQLALLQDQV--APFDGQLAKDQMEMELGGPLDNWF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
D P+ASAS+AQVH A+L+ S ++V+KV++P I V+ +D+ +Y +AR++E P
Sbjct: 122 TDFDIKPLASASIAQVHTAKLKDSGREIVLKVIRPDIRPVIESDIRLMYRMARLVEQHIP 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRR 178
E R V ++++ +++L+E+D ++EA+N RR E + + P+V S+
Sbjct: 182 EARRLKPVEVIEEYEKTLLDELDLRREASNAMQLRRNFEG---SEELYVPEVILDLSSEH 238
Query: 179 VLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRD 238
++ ER+YG+ ++D++ + ++ + ++V+F + FHAD+H GN+++ D
Sbjct: 239 LMVSERIYGIQVSDIEQLEKNGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVNPD 298
Query: 239 G-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKA 293
IG LD GIVG ++ + + L +Y +A ++ G D + +
Sbjct: 299 NPENPQWIG-LDCGIVGTLNKEDKRYLAENLLGFFNSDYHKVAQLHVDSGWVPADTNVEE 357
Query: 294 FARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYG 353
F + + E + A G E + L+L + +
Sbjct: 358 FEFAIRMV--------CEPIFAKPLG---------------EISFGHVLLNLFNTARRFN 394
Query: 354 LKFPREFALLLKQLLYFDRYTRLLAPNMNM 383
++ + LL K LLY + R L P +++
Sbjct: 395 MEVQPQLVLLQKTLLYVEGLGRQLYPQLDL 424
>sp|Q5E8V3|UBIB_VIBF1 Probable ubiquinone biosynthesis protein UbiB OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=ubiB PE=3 SV=1
Length = 544
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 194/390 (49%), Gaps = 36/390 (9%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLE-DLGRPIESVY 58
+G +IK GQ +++ LFPP ++ D+ PF G++ + +E +LG P+++ +
Sbjct: 64 LGPVWIKFGQMMSTRRDLFPPHLADQLALLQDQV--APFDGQLAKDQMEMELGGPLDNWF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
D P+ASAS+AQVH A+L+ S ++V+KV++P I V+ +D+ +Y +AR++E P
Sbjct: 122 TDFDIKPLASASIAQVHTAKLKDSGREIVLKVIRPDIRPVIESDIRLMYRMARLVEQHIP 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRR 178
E R V ++++ +++L+E+D ++EA+N RR E + + P+V S+
Sbjct: 182 EARRLKPVKVIEEYEKTLLDELDLRREASNAMQLRRNFEG---SEELYVPEVILDLSSEH 238
Query: 179 VLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRD 238
++ ER+YG+ ++D++ + ++ + ++V+F + FHAD+H GN+++ D
Sbjct: 239 LMVSERIYGIQVSDIEQLERNGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVNPD 298
Query: 239 G-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKA 293
IG LD GIVG ++ + + L +Y +A ++ G D + +
Sbjct: 299 NPENPQWIG-LDCGIVGTLNKEDKRYLAENLLGFFNSDYHKVAQLHVDSGWVPADTNVEE 357
Query: 294 FARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYG 353
F + + E + A G E + L+L + +
Sbjct: 358 FEFAIRMV--------CEPIFAKPLG---------------EISFGHVLLNLFNTARRFN 394
Query: 354 LKFPREFALLLKQLLYFDRYTRLLAPNMNM 383
++ + LL K LLY + R L P +++
Sbjct: 395 MEVQPQLVLLQKTLLYVEGLGRQLYPQLDL 424
>sp|Q7VN62|UBIB_HAEDU Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=ubiB PE=3 SV=1
Length = 542
Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 194/398 (48%), Gaps = 44/398 (11%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LGRPIESVY 58
+G +IKLGQ +A+ LF P ++ D PF G++ R ++E LG +E+ +
Sbjct: 64 LGPVWIKLGQMLATRRDLFEPALADQLALLQDSV--APFDGKLARKIIEQALGNTLETWF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQ----DDVVIKVLKPGIEDVLVADLNFVYVVARILE 114
+ D +ASAS+AQVH A +Q +VV+KV++P IE ++ AD+ +Y +A+++
Sbjct: 122 DDFDEQALASASIAQVHTATFNKNQPLAGQNVVLKVIRPDIEHIIKADIALMYQLAKLIP 181
Query: 115 FLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHC 174
+L+ + R +V++ +++L+E+D +E AN R E + P +Y
Sbjct: 182 YLSDDAKRLRATEVVREYEKTLLDELDLTREMANAIRLRNNFEN---SEMLYVPAMYPDF 238
Query: 175 STRRVLTMERLYGVPLTDLDSISSLVSSPENSLITA---LNVWFGSLLACETFHADVHAG 231
+ V+ MER+YG+P++D I++L + N + A + V+F + FHAD+HAG
Sbjct: 239 CHKNVIVMERIYGIPVSD---IATLTENGTNMKLLAERGVQVFFTQVFRDSFFHADMHAG 295
Query: 232 NLWL----LRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDK 287
N+++ D + +D GIVG ++ + + +Y +A IE G T
Sbjct: 296 NIFVNPNHPEDPQYIGIDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVALMHIESGWTPA 355
Query: 288 DIDAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLR 347
D D AF E+ F ++ E + A + E + L+L
Sbjct: 356 DTDVDAF----EEAFRTV----CEPIFAKP---------------LAEISFGQVLLNLFN 392
Query: 348 VSESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
V+ + ++ + LL K LLY + R + P +++ Q
Sbjct: 393 VARQFNMEVQPQLVLLQKTLLYIEGLGRQVYPALDLWQ 430
>sp|Q87TH2|UBIB_VIBPA Probable ubiquinone biosynthesis protein UbiB OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=ubiB PE=3 SV=1
Length = 544
Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 195/396 (49%), Gaps = 44/396 (11%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LGRPIESVY 58
+G +IK GQ +++ LFPP + D+ PF GE+ + +E LG P+E+ +
Sbjct: 64 LGPVWIKFGQMMSTRRDLFPPHIADPLALLQDQV--APFDGELAKQQMEKALGGPLENWF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNP 118
D P+ASAS+AQVH ARL+ + +VV+KV++P I V+ +DL ++ +ARI+ P
Sbjct: 122 TEFDIKPLASASIAQVHTARLKDTNQEVVLKVIRPDIRPVIDSDLKLMHRMARIVAGAMP 181
Query: 119 ELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRR 178
E R V +V++ +++L+E+D ++EAAN RR E + + P+V+ S
Sbjct: 182 EARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRNFEG---SEELYVPEVFPDFSNET 238
Query: 179 VLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRD 238
V+ ER+YG+ ++D++ + + ++ + ++V+F + FHAD+H GN+++ +
Sbjct: 239 VMVSERIYGIQVSDIEGLEANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVKPE 298
Query: 239 G-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMG--ATDKDIDA 291
IG LD GIVG ++ + + + +Y +A ++ G D ++D
Sbjct: 299 HPENPMWIG-LDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAELHVDSGWVPADTNVDE 357
Query: 292 KAFARDL--EKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVS 349
FA + E IF+ + E + L+L +
Sbjct: 358 FEFAIRIVCEPIFAK---------------------------PLCEISFGHVLLNLFNTA 390
Query: 350 ESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ ++ + LL K LLY + R L P +++ +
Sbjct: 391 RRFNMEVQPQLVLLQKTLLYVEGLGRQLYPQLDLWE 426
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 190/391 (48%), Gaps = 43/391 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G T+IK+GQ +++ P L P Y++E + P F +I+ E+L I++ + Y
Sbjct: 43 LGPTFIKIGQILSTRPDLLPLPYIKELSKLQNNVPPENFIDIENLFFEELSSTIDNTFLY 102
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
D TPI SAS+AQVH A L+ + V++K+ +PGI +++ DL+ ++ ++L +
Sbjct: 103 FDKTPIGSASIAQVHDAILKDGR-FVIVKIQRPGIAEMMKTDLS---IIKKLL-----NI 153
Query: 121 SRTSMVGIVKDIRE-------SMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQH 173
++T + D +E S +E+DF E NI+ F++ E + R P
Sbjct: 154 TKTKFTDALIDPKEAIDELFISTTQELDFINEINNIKKFKKLNEDVKFVR---TPYTIDK 210
Query: 174 CSTRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNL 233
T +++ ME++ G+ + +L + + E +F + FH D H GNL
Sbjct: 211 LCTEKIIVMEKIVGIKIDNLKKLLNEGYDLEELGKKLTLSYFKQVFQDGFFHGDPHPGNL 270
Query: 234 WLLRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKA 293
L+R+ I ++DFGI+G IS +++ + ++A + M S ++ +G ++ +
Sbjct: 271 -LIRENHICYIDFGIMGTISKSLKISLNDAILAVAYHDVNKMISVIMSIGVKKGYVNRNS 329
Query: 294 FARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYG 353
+E +F N +VS + +++ + ++ ++S++
Sbjct: 330 LYESIEYLFD-------------------NYISVSLKNI----KISVMLQEIFQISKNNN 366
Query: 354 LKFPREFALLLKQLLYFDRYTRLLAPNMNML 384
+K P+E +LLK L + ++P ++++
Sbjct: 367 IKLPKELTMLLKSTLMIEGVIARISPELSIV 397
>sp|A4WFY3|UBIB_ENT38 Probable ubiquinone biosynthesis protein UbiB OS=Enterobacter sp.
(strain 638) GN=ubiB PE=3 SV=1
Length = 546
Score = 145 bits (367), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 190/390 (48%), Gaps = 31/390 (7%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGR-PIESVYE 59
+G +IK GQ +++ LFPP+ ++ DR K+ + E +G P+E+ ++
Sbjct: 64 LGPVWIKFGQMLSTRRDLFPPQIADQLALLQDRVAPFDGARAKQQIEEAMGNIPVETWFD 123
Query: 60 YVDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPE 119
D P+ASAS+AQVH ARL+ + ++VIKV++P I V+ AD+ +Y +AR + L P+
Sbjct: 124 DFDIKPLASASIAQVHTARLKENGKEIVIKVIRPDILPVIRADMKLIYRLARWVPRLLPD 183
Query: 120 LSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRV 179
R + +V++ +++++E++ +E+AN RR E + P+VY ++ +
Sbjct: 184 GRRLRPMEVVREYEKTLIDELNLLRESANAIQLRRNFENSPML---YVPEVYSDYCSQNM 240
Query: 180 LTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWL---- 235
+ MER+YG+P++D+ ++ + ++ + + V+F + FHAD+H GN+++
Sbjct: 241 MVMERIYGIPVSDIVALENQGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEH 300
Query: 236 LRDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFA 295
D + +D GIVG ++ + + + +Y +A ++ G D + + F
Sbjct: 301 PEDPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFE 360
Query: 296 RDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGLK 355
+ + I E + E + L+L + + ++
Sbjct: 361 FAIRTVCEPIFEKP-----------------------LSEISFGHVLLNLFNTARRFNME 397
Query: 356 FPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ LL K LLY + R L P +++ +
Sbjct: 398 VQPQLVLLQKTLLYVEGVGRQLYPQLDLWK 427
>sp|A3N3S2|UBIB_ACTP2 Probable ubiquinone biosynthesis protein UbiB OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=ubiB PE=3
SV=1
Length = 544
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 193/396 (48%), Gaps = 40/396 (10%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPF-GEIKRTLLED-LGRPIESVY 58
+G +IKLGQ +++ LF PE E+ D PF G+ R ++E LG +E+ +
Sbjct: 64 LGPVWIKLGQMLSTRRDLFEPELAEQLALLQDSVE--PFDGKSARQIIEQALGGSLETWF 121
Query: 59 EYVDPTPIASASVAQVHGARLRGSQ----DDVVIKVLKPGIEDVLVADLNFVYVVARILE 114
+ D +ASAS+AQVH A+ +Q DVV+KV++P IE ++ AD+ +Y +A +
Sbjct: 122 DEFDEQALASASIAQVHTAKFNQNQPLAGKDVVLKVIRPDIEPIIKADIALMYRLASWIP 181
Query: 115 FLNPELSRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHC 174
L+ + R +V++ +++L+E+D +E AN R E + P++YQ
Sbjct: 182 RLSNDAKRLRATEVVREYEKTLLDELDLTREMANAIRLRNNFEN---SEMLYVPEMYQDF 238
Query: 175 STRRVLTMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLW 234
+ V+ MER+YG+P++D++++ + + + + V+F + FHAD+HAGN++
Sbjct: 239 CHKNVIVMERIYGIPVSDVETLKANGTDMKLLAERGVQVFFTQVFRDSFFHADMHAGNIF 298
Query: 235 LLRDG-----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDI 289
+ + IG +D GIVG ++ + + +Y +A +E G T D
Sbjct: 299 VNPNHPENPQYIG-IDCGIVGTLNQNDKRYLAESFVAFFNRDYRRVALMHVESGWTPPDT 357
Query: 290 DAKAFARDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVS 349
D AF E+ F + E + A + E + L+L V+
Sbjct: 358 DIDAF----EQAFREV----CEPIFAKP---------------LSEISFGHVLLNLFNVA 394
Query: 350 ESYGLKFPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ ++ + LL K LLY + R + P +++ Q
Sbjct: 395 REFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQ 430
>sp|C3LPS7|UBIB_VIBCM Probable ubiquinone biosynthesis protein UbiB OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=ubiB PE=3 SV=1
Length = 544
Score = 144 bits (364), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 187/390 (47%), Gaps = 32/390 (8%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G +IK GQ +++ LFPP + D+ + K+ + E+LG P+E+ ++
Sbjct: 64 LGPVWIKFGQMMSTRRDLFPPHIADPLAMLQDKVAPFDGLQAKQLIEEELGAPLETWFDD 123
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
D P+ASAS+AQVH A+L+ + DVV+KV++P I + AD+ +Y VARI+ PE
Sbjct: 124 FDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRPQIDADIKLMYRVARIVAKALPEA 183
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVL 180
R V +V++ +++L+E+D ++EAAN RR E + + P+V V+
Sbjct: 184 RRLKPVEVVREYEKTLLDELDLRREAANAIQLRRNFEN---SEELYVPEVLTDFCNETVM 240
Query: 181 TMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG- 239
ER+YG+ ++DL + + ++ + ++V+F + FHAD+H GN+++ +
Sbjct: 241 VSERIYGIQVSDLAGLHANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVNPNHP 300
Query: 240 ----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFA 295
IG LD GIVG ++ + + + +Y +A ++ G D + F
Sbjct: 301 ENPQWIG-LDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAQLHVDSGWVPLDTNVDEFE 359
Query: 296 RDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGLK 355
+ + E + A + E + L+L + + ++
Sbjct: 360 VAIRMV--------CEPIFAKP---------------LCEISFGHVLLNLFNTARRFNME 396
Query: 356 FPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ LL K LLY + R L P +++ Q
Sbjct: 397 VQPQLVLLQKTLLYVEGLGRQLYPQLDLWQ 426
>sp|Q9KVQ4|UBIB_VIBCH Probable ubiquinone biosynthesis protein UbiB OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=ubiB PE=3 SV=1
Length = 544
Score = 144 bits (364), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 187/390 (47%), Gaps = 32/390 (8%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G +IK GQ +++ LFPP + D+ + K+ + E+LG P+E+ ++
Sbjct: 64 LGPVWIKFGQMMSTRRDLFPPHIADPLAMLQDKVAPFDGLQAKQLIEEELGAPLETWFDD 123
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
D P+ASAS+AQVH A+L+ + DVV+KV++P I + AD+ +Y VARI+ PE
Sbjct: 124 FDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRPQIDADIKLMYRVARIVAKALPEA 183
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVL 180
R V +V++ +++L+E+D ++EAAN RR E + + P+V V+
Sbjct: 184 RRLKPVEVVREYEKTLLDELDLRREAANAIQLRRNFEN---SEELYVPEVLTDFCNETVM 240
Query: 181 TMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWLLRDG- 239
ER+YG+ ++DL + + ++ + ++V+F + FHAD+H GN+++ +
Sbjct: 241 VSERIYGIQVSDLAGLHANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVNPNHP 300
Query: 240 ----RIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFA 295
IG LD GIVG ++ + + + +Y +A ++ G D + F
Sbjct: 301 ENPQWIG-LDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAQLHVDSGWVPLDTNVDEFE 359
Query: 296 RDLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGLK 355
+ + E + A + E + L+L + + ++
Sbjct: 360 VAIRMV--------CEPIFAKP---------------LCEISFGHVLLNLFNTARRFNME 396
Query: 356 FPREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ LL K LLY + R L P +++ Q
Sbjct: 397 VQPQLVLLQKTLLYVEGLGRQLYPQLDLWQ 426
>sp|B2VG47|UBIB_ERWT9 Probable ubiquinone biosynthesis protein UbiB OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=ubiB PE=3
SV=1
Length = 545
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 184/389 (47%), Gaps = 30/389 (7%)
Query: 1 MGATYIKLGQFIASSPTLFPPEYVEEFQNCFDRTPAVPFGEIKRTLLEDLGRPIESVYEY 60
+G +IK GQ +++ LFPP ++ D+ + K+ + LG P+ES ++
Sbjct: 64 LGPVWIKFGQMMSTRRDLFPPHIADQLAMLQDKVAPFDGAQAKKLIEHSLGAPVESQFDD 123
Query: 61 VDPTPIASASVAQVHGARLRGSQDDVVIKVLKPGIEDVLVADLNFVYVVARILEFLNPEL 120
D P+ASAS+AQVH A L+ + +VVIKV++P I V+ AD+ +Y +AR + L P+
Sbjct: 124 FDIVPLASASIAQVHTATLKENGREVVIKVIRPDILPVIKADMKLIYRLARWVPRLLPDG 183
Query: 121 SRTSMVGIVKDIRESMLEEVDFKKEAANIESFRRYLEAMGLTRQATAPKVYQHCSTRRVL 180
R +V D +++L+E++ +EAAN RR A G + P++Y + +L
Sbjct: 184 RRLRPQEVVADYEKTLLDELNLLREAANAIQLRRNF-ADG--QMLYVPEIYSDYCSENML 240
Query: 181 TMERLYGVPLTDLDSISSLVSSPENSLITALNVWFGSLLACETFHADVHAGNLWL----L 236
MER+YG+P++D+ ++ + + + V+F + FHAD+H GN+++
Sbjct: 241 VMERIYGIPISDVATLEQHGVNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHP 300
Query: 237 RDGRIGFLDFGIVGRISPKTWAAMDLFLASIATEEYESMASALIEMGATDKDIDAKAFAR 296
D + +D GIVG ++ + + + +Y +A ++ G D + + F
Sbjct: 301 EDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPADTNVEDFEF 360
Query: 297 DLEKIFSSIQELDTELVVATARGTTTNTTAVSANIVVDERQMNALFLDLLRVSESYGLKF 356
+ + I E + E + L+L + + ++
Sbjct: 361 AIRTVCEPIFEKP-----------------------LAEISFGHVLLNLFNTARRFNMEV 397
Query: 357 PREFALLLKQLLYFDRYTRLLAPNMNMLQ 385
+ LL K LLY + R L P +++ +
Sbjct: 398 QPQLVLLQKTLLYVEGVGRQLYPQLDLWK 426
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,501,222
Number of Sequences: 539616
Number of extensions: 5539085
Number of successful extensions: 17629
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 16939
Number of HSP's gapped (non-prelim): 256
length of query: 404
length of database: 191,569,459
effective HSP length: 120
effective length of query: 284
effective length of database: 126,815,539
effective search space: 36015613076
effective search space used: 36015613076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)