BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015585
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B9K|H Chain H, Crystal Structure Of Cd8alpha-Beta In Complex With Yts
156.7 Fab
pdb|3B9K|D Chain D, Crystal Structure Of Cd8alpha-Beta In Complex With Yts
156.7 Fab
Length = 214
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 332 CNCIGLSV--DSLRWVKRPSFRGLHWLG 357
C+ G S+ DS+ WV++P +GL W+G
Sbjct: 22 CSVSGFSLISDSVHWVRQPPGKGLEWMG 49
>pdb|3VG0|H Chain H, Antibody Fab Fragment
Length = 223
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 332 CNCIGLSV--DSLRWVKRPSFRGLHWLGI 358
C G S+ D + W+++P +GL WLG+
Sbjct: 24 CTISGFSLTDDGVSWIRQPPGKGLEWLGV 52
>pdb|3V6O|C Chain C, Leptin Receptor-Antibody Complex
pdb|3V6O|D Chain D, Leptin Receptor-Antibody Complex
Length = 221
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 332 CNCIGLSV--DSLRWVKRPSFRGLHWLGI 358
C G S+ D + W+++P +GL WLG+
Sbjct: 23 CTISGFSLTDDGVSWIRQPPGKGLEWLGV 51
>pdb|3VFG|H Chain H, Crystal Structure Of Monoclonal Anitbody 3f8 Fab Fragment
That Binds To Gd2 Ganglioside
Length = 219
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 332 CNCIGLSVDS--LRWVKRPSFRGLHWLGI 358
C G SV + + WV++P +GL WLG+
Sbjct: 22 CTVSGFSVTNYGVHWVRQPPGKGLEWLGV 50
>pdb|3IU4|H Chain H, Anti Neugcgm3 Ganglioside Chimeric Antibody Chp3
Length = 263
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 332 CNCIGLSVD--SLRWVKRPSFRGLHWLGI 358
C G S+ S+ WV++P +GL WLG+
Sbjct: 22 CTVSGFSLSRYSVHWVRQPPGKGLEWLGM 50
>pdb|3IY6|B Chain B, Variable Domains Of The Computer Generated Model (Wam) Of
Fab E Fitted Into The Cryoem Reconstruction Of The
Virus- Fab E Complex
Length = 115
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 332 CNCIGLSVDS--LRWVKRPSFRGLHWLGI 358
C G S+ S + WV++P +GL WLG+
Sbjct: 16 CTVSGFSLSSYHVHWVRQPPGKGLEWLGV 44
>pdb|2ARJ|H Chain H, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
pdb|2ARJ|B Chain B, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
Length = 215
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 332 CNCIGLSV--DSLRWVKRPSFRGLHWLG 357
C G S+ +S+ WV++P +GL W+G
Sbjct: 22 CTVSGFSLTSNSVHWVRQPPGKGLEWMG 49
>pdb|1T4K|B Chain B, Crystal Structure Of Unliganded Aldolase Antibody 93f3 Fab
pdb|1T4K|D Chain D, Crystal Structure Of Unliganded Aldolase Antibody 93f3 Fab
Length = 217
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 332 CNCIGLSVD--SLRWVKRPSFRGLHWLGI----GQTRLAS 365
C G S+ + W+++P +GL WLG+ G T AS
Sbjct: 22 CTVSGFSLSDYGVSWIRQPPGKGLEWLGVIWGDGSTYYAS 61
>pdb|1FE8|H Chain H, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
pdb|1FE8|I Chain I, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
pdb|1FE8|J Chain J, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
Length = 210
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 332 CNCIGLSVDS--LRWVKRPSFRGLHWLGI 358
C G S+ + + WV++P +GL WLG+
Sbjct: 22 CTVSGFSLTTYGVSWVRQPPGKGLEWLGV 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,604,999
Number of Sequences: 62578
Number of extensions: 385732
Number of successful extensions: 1343
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1336
Number of HSP's gapped (non-prelim): 14
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)