Query 015585
Match_columns 404
No_of_seqs 219 out of 2762
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 07:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 2E-29 4.3E-34 217.6 9.0 314 18-359 139-460 (483)
2 KOG4341 F-box protein containi 100.0 1.3E-28 2.8E-33 212.5 10.6 338 20-384 113-457 (483)
3 PLN00113 leucine-rich repeat r 99.8 1.7E-19 3.6E-24 186.6 13.5 330 13-392 89-442 (968)
4 PLN00113 leucine-rich repeat r 99.8 1.6E-19 3.5E-24 186.7 12.7 61 13-85 114-174 (968)
5 cd00116 LRR_RI Leucine-rich re 99.8 3.3E-17 7.1E-22 148.3 24.2 167 186-361 137-317 (319)
6 cd00116 LRR_RI Leucine-rich re 99.8 6.4E-17 1.4E-21 146.4 22.5 280 101-390 15-319 (319)
7 KOG4194 Membrane glycoprotein 99.8 3.8E-20 8.2E-25 166.8 0.6 337 9-396 94-459 (873)
8 KOG4194 Membrane glycoprotein 99.7 2.1E-19 4.5E-24 162.1 0.7 326 17-393 78-431 (873)
9 KOG2120 SCF ubiquitin ligase, 99.7 6.8E-17 1.5E-21 134.6 10.6 264 111-397 138-405 (419)
10 KOG2120 SCF ubiquitin ligase, 99.7 1.1E-16 2.3E-21 133.4 6.9 203 18-239 186-390 (419)
11 KOG1909 Ran GTPase-activating 99.6 3.9E-14 8.5E-19 120.9 11.6 254 40-315 28-322 (382)
12 KOG1947 Leucine rich repeat pr 99.5 3.9E-14 8.5E-19 135.8 12.7 241 73-344 186-447 (482)
13 KOG1909 Ran GTPase-activating 99.5 1.4E-13 3.1E-18 117.5 13.9 270 101-381 22-327 (382)
14 PLN03210 Resistant to P. syrin 99.5 7.9E-14 1.7E-18 145.3 11.2 128 210-362 777-904 (1153)
15 KOG1947 Leucine rich repeat pr 99.5 1.8E-13 3.9E-18 131.2 12.2 222 131-364 184-440 (482)
16 PLN03210 Resistant to P. syrin 99.4 4.8E-13 1E-17 139.5 10.7 104 235-362 777-880 (1153)
17 KOG0444 Cytoskeletal regulator 99.4 4.4E-15 9.5E-20 135.8 -6.1 332 13-393 28-377 (1255)
18 KOG3207 Beta-tubulin folding c 99.3 8.2E-13 1.8E-17 116.1 1.3 212 14-246 118-336 (505)
19 KOG0444 Cytoskeletal regulator 99.3 4.5E-14 9.7E-19 129.3 -6.9 300 12-362 73-373 (1255)
20 KOG3207 Beta-tubulin folding c 99.1 9.4E-11 2E-15 103.3 3.8 188 106-303 118-312 (505)
21 PRK15387 E3 ubiquitin-protein 98.9 2.2E-09 4.8E-14 105.2 8.6 260 17-366 201-460 (788)
22 KOG3665 ZYG-1-like serine/thre 98.9 1.7E-08 3.7E-13 98.5 11.9 160 135-299 122-282 (699)
23 KOG0618 Serine/threonine phosp 98.9 1.7E-10 3.7E-15 110.6 -2.2 222 109-362 241-487 (1081)
24 KOG3665 ZYG-1-like serine/thre 98.9 9.7E-09 2.1E-13 100.2 9.4 217 12-244 55-283 (699)
25 COG5238 RNA1 Ran GTPase-activa 98.8 1.2E-07 2.7E-12 78.9 12.9 196 107-306 90-316 (388)
26 COG5238 RNA1 Ran GTPase-activa 98.8 1.3E-07 2.9E-12 78.8 12.9 252 107-365 28-317 (388)
27 KOG0618 Serine/threonine phosp 98.8 3.1E-10 6.7E-15 108.9 -3.0 129 161-303 359-487 (1081)
28 KOG1259 Nischarin, modulator o 98.7 1.4E-08 3.1E-13 85.6 5.3 143 208-377 281-425 (490)
29 PRK15387 E3 ubiquitin-protein 98.7 2.5E-08 5.5E-13 97.9 7.3 243 17-345 222-465 (788)
30 KOG2982 Uncharacterized conser 98.6 1.8E-08 3.8E-13 85.0 3.3 232 111-360 47-288 (418)
31 KOG4237 Extracellular matrix p 98.6 1.8E-09 3.8E-14 94.3 -3.6 91 288-393 270-361 (498)
32 KOG2982 Uncharacterized conser 98.5 1.3E-07 2.8E-12 79.8 3.6 206 76-303 46-260 (418)
33 KOG3864 Uncharacterized conser 98.4 2.7E-07 5.8E-12 73.7 4.7 105 268-382 103-207 (221)
34 PF14580 LRR_9: Leucine-rich r 98.3 2E-07 4.3E-12 74.9 1.3 14 210-223 87-100 (175)
35 KOG0472 Leucine-rich repeat pr 98.3 1.6E-08 3.4E-13 88.7 -5.9 38 323-364 504-541 (565)
36 KOG3864 Uncharacterized conser 98.3 7.7E-07 1.7E-11 71.1 3.8 83 213-301 103-185 (221)
37 PF14580 LRR_9: Leucine-rich r 98.2 1.3E-07 2.9E-12 75.9 -1.0 37 323-359 112-148 (175)
38 KOG4237 Extracellular matrix p 98.2 1.2E-07 2.6E-12 83.1 -1.6 40 11-51 85-124 (498)
39 KOG0472 Leucine-rich repeat pr 98.2 4.6E-07 9.9E-12 79.8 1.5 110 206-335 430-539 (565)
40 PRK15370 E3 ubiquitin-protein 98.2 9.1E-06 2E-10 80.6 10.5 252 17-343 178-433 (754)
41 PRK15370 E3 ubiquitin-protein 98.2 2.3E-06 5.1E-11 84.7 6.3 122 212-364 305-428 (754)
42 KOG1259 Nischarin, modulator o 98.2 2.5E-07 5.5E-12 78.3 -0.6 235 126-394 173-415 (490)
43 KOG4308 LRR-containing protein 98.1 1.7E-06 3.6E-11 81.2 3.2 347 19-393 89-475 (478)
44 KOG4308 LRR-containing protein 98.0 1E-06 2.2E-11 82.6 -0.3 222 163-393 89-333 (478)
45 KOG4658 Apoptotic ATPase [Sign 98.0 1.7E-06 3.7E-11 87.0 0.0 233 14-281 542-785 (889)
46 KOG1859 Leucine-rich repeat pr 97.9 8.7E-07 1.9E-11 83.8 -3.4 239 126-398 75-329 (1096)
47 KOG4658 Apoptotic ATPase [Sign 97.7 1.3E-05 2.7E-10 80.9 2.2 235 41-306 544-784 (889)
48 KOG0617 Ras suppressor protein 97.7 2.2E-07 4.7E-12 72.2 -8.5 60 13-84 29-88 (264)
49 PF13855 LRR_8: Leucine rich r 97.4 4.1E-05 9E-10 50.1 0.4 34 18-52 2-35 (61)
50 PF13855 LRR_8: Leucine rich r 97.3 6.5E-05 1.4E-09 49.2 0.3 37 184-221 23-59 (61)
51 KOG1859 Leucine-rich repeat pr 97.2 4E-05 8.6E-10 73.0 -1.8 35 210-247 186-220 (1096)
52 KOG0617 Ras suppressor protein 97.2 4.9E-06 1.1E-10 64.8 -7.1 39 322-365 148-187 (264)
53 smart00367 LRR_CC Leucine-rich 97.0 0.0011 2.3E-08 34.7 2.9 23 292-314 2-24 (26)
54 PLN03150 hypothetical protein; 96.8 0.0033 7.1E-08 62.1 7.0 82 44-146 420-501 (623)
55 smart00367 LRR_CC Leucine-rich 96.7 0.0019 4.1E-08 33.8 2.6 24 323-346 1-24 (26)
56 PLN03150 hypothetical protein; 96.6 0.0041 9E-08 61.4 6.5 107 188-303 420-526 (623)
57 KOG2739 Leucine-rich acidic nu 96.6 0.00026 5.6E-09 59.4 -2.1 65 263-335 62-127 (260)
58 PRK15386 type III secretion pr 96.1 0.009 2E-07 54.6 5.0 55 108-172 51-105 (426)
59 COG4886 Leucine-rich repeat (L 96.0 0.0064 1.4E-07 56.8 3.5 190 21-247 97-288 (394)
60 PF12799 LRR_4: Leucine Rich r 95.8 0.012 2.5E-07 35.3 3.0 37 324-364 1-37 (44)
61 PF12799 LRR_4: Leucine Rich r 95.8 0.02 4.3E-07 34.4 3.8 36 187-224 2-37 (44)
62 KOG1644 U2-associated snRNP A' 95.7 0.01 2.2E-07 48.1 3.3 64 292-362 88-151 (233)
63 KOG2739 Leucine-rich acidic nu 95.6 0.0026 5.7E-08 53.5 -0.4 11 185-195 115-125 (260)
64 KOG2123 Uncharacterized conser 95.6 0.0032 6.9E-08 53.5 -0.2 114 16-155 18-134 (388)
65 KOG1644 U2-associated snRNP A' 95.0 0.026 5.6E-07 45.8 3.4 86 184-276 62-150 (233)
66 KOG2123 Uncharacterized conser 94.8 0.0072 1.6E-07 51.4 -0.3 80 162-247 20-99 (388)
67 PF13516 LRR_6: Leucine Rich r 94.6 0.034 7.4E-07 28.2 2.2 22 292-314 2-23 (24)
68 KOG0531 Protein phosphatase 1, 94.6 0.0049 1.1E-07 57.9 -2.0 14 71-84 114-127 (414)
69 COG4886 Leucine-rich repeat (L 94.4 0.067 1.5E-06 49.9 5.2 175 70-276 111-287 (394)
70 PRK15386 type III secretion pr 94.3 0.044 9.5E-07 50.3 3.5 145 177-362 43-188 (426)
71 PF13516 LRR_6: Leucine Rich r 94.3 0.045 9.8E-07 27.8 2.2 21 211-231 2-22 (24)
72 KOG3763 mRNA export factor TAP 93.4 0.15 3.2E-06 47.9 5.3 98 287-392 213-313 (585)
73 KOG0531 Protein phosphatase 1, 92.6 0.015 3.2E-07 54.7 -2.4 17 349-365 303-319 (414)
74 smart00368 LRR_RI Leucine rich 91.1 0.36 7.9E-06 25.5 3.0 23 211-233 2-24 (28)
75 smart00368 LRR_RI Leucine rich 91.0 0.36 7.9E-06 25.5 2.9 23 292-315 2-24 (28)
76 KOG4579 Leucine-rich repeat (L 89.2 0.064 1.4E-06 40.8 -1.3 34 160-195 76-109 (177)
77 PF13504 LRR_7: Leucine rich r 88.2 0.4 8.7E-06 21.9 1.5 14 351-364 1-14 (17)
78 KOG4579 Leucine-rich repeat (L 88.1 0.31 6.7E-06 37.2 1.6 38 184-223 75-112 (177)
79 KOG3763 mRNA export factor TAP 84.4 2.1 4.5E-05 40.6 5.3 66 232-303 214-281 (585)
80 PF00560 LRR_1: Leucine Rich R 76.3 0.63 1.4E-05 22.9 -0.4 12 353-364 2-13 (22)
81 smart00370 LRR Leucine-rich re 76.1 2.6 5.6E-05 21.5 1.9 17 351-367 2-18 (26)
82 smart00369 LRR_TYP Leucine-ric 76.1 2.6 5.6E-05 21.5 1.9 17 351-367 2-18 (26)
83 KOG0532 Leucine-rich repeat (L 75.9 0.83 1.8E-05 43.5 -0.1 133 205-366 115-249 (722)
84 KOG0532 Leucine-rich repeat (L 63.0 2.2 4.8E-05 40.8 -0.2 40 12-54 116-155 (722)
85 PF07723 LRR_2: Leucine Rich R 57.6 11 0.00023 19.5 1.9 26 352-379 1-26 (26)
86 KOG3735 Tropomodulin and leiom 56.9 21 0.00046 31.9 4.6 77 263-344 195-274 (353)
87 PF13306 LRR_5: Leucine rich r 54.7 12 0.00027 28.0 2.7 13 13-25 8-20 (129)
88 KOG3735 Tropomodulin and leiom 54.2 35 0.00076 30.6 5.5 82 151-233 188-277 (353)
89 KOG4242 Predicted myosin-I-bin 50.9 23 0.0005 33.3 4.1 63 292-363 413-480 (553)
90 smart00365 LRR_SD22 Leucine-ri 45.7 20 0.00043 18.5 1.7 12 18-29 3-14 (26)
91 smart00364 LRR_BAC Leucine-ric 44.2 15 0.00032 19.1 1.0 15 351-365 2-16 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=2e-29 Score=217.58 Aligned_cols=314 Identities=25% Similarity=0.407 Sum_probs=200.9
Q ss_pred CCcEEeccC-CCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhc-CCCCCceEEecccccCCCCCccc
Q 015585 18 NLRSLSLVL-DVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLG-SCHHLTGLSLTRCRHNHQGTFKR 95 (404)
Q Consensus 18 ~L~~L~L~~-~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~ 95 (404)
.|+.|.+.| ..+.+..+..+...||++++|++.+| ..+++..+..++ +|++|++|++..|. .
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc--------~~iTd~s~~sla~~C~~l~~l~L~~c~--------~ 202 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGC--------KKITDSSLLSLARYCRKLRHLNLHSCS--------S 202 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcc--------eeccHHHHHHHHHhcchhhhhhhcccc--------h
Confidence 456666664 55555666666666777777766666 455666666653 66667777666553 3
Q ss_pred cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585 96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 175 (404)
Q Consensus 96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 175 (404)
+++..+..+...|++|++|++++|+.++..+++.+.++|+.++.+...+|.....+.+..+..+++.+.++++..|..++
T Consensus 203 iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 203 ITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred hHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc
Confidence 55666666666677777777777666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhh-CCCCCCEEeccCCCCCChHHHHhhh-CCCCCCEEEccCC-ccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585 176 SETVKKLA-SSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDK 252 (404)
Q Consensus 176 ~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 252 (404)
++.+..++ .|..|+.|..++|..+++..+.++. ++++|+.|.+..| ++++.++..+++.++.|+.+++..|..+.+.
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 66655555 4666677777666666666666653 5666777666666 4666666666666667777777666655555
Q ss_pred HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHH---hCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEE
Q 015585 253 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRL 329 (404)
Q Consensus 253 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L 329 (404)
.+..++ ..++.|+.|.+++|..+++.+...+.. +...|+.+.+++|+.+++..+..+.. |++|+++
T Consensus 363 tL~sls----~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~-------c~~Leri 431 (483)
T KOG4341|consen 363 TLASLS----RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI-------CRNLERI 431 (483)
T ss_pred hHhhhc----cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh-------Cccccee
Confidence 555555 566667777777666666665554432 23556666666676666666666663 6667777
Q ss_pred eccCCCCCCHHHHHhhhcCCCCcccEEecC
Q 015585 330 DLCNCIGLSVDSLRWVKRPSFRGLHWLGIG 359 (404)
Q Consensus 330 ~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~ 359 (404)
++.+|..++.+++..+. .++|++++..+-
T Consensus 432 ~l~~~q~vtk~~i~~~~-~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 432 ELIDCQDVTKEAISRFA-THLPNIKVHAYF 460 (483)
T ss_pred eeechhhhhhhhhHHHH-hhCccceehhhc
Confidence 77766666666666665 456666655443
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=1.3e-28 Score=212.53 Aligned_cols=338 Identities=22% Similarity=0.312 Sum_probs=291.0
Q ss_pred cEEeccC--CCCChHHHHHHHhhC-CCccEEeecCCCCCCcccccccchhhhhhh-cCCCCCceEEecccccCCCCCccc
Q 015585 20 RSLSLVL--DVITDELLITITASL-PFLVELDLEDRPNTEPLARLDLTSSGLQSL-GSCHHLTGLSLTRCRHNHQGTFKR 95 (404)
Q Consensus 20 ~~L~L~~--~~~~~~~~~~i~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~ 95 (404)
+++|+.. ..+....+..+..+| ..|++|.+++| ....+..+..+ ..+|++++|++.+|. .
T Consensus 113 q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~--------r~v~~sslrt~~~~CpnIehL~l~gc~--------~ 176 (483)
T KOG4341|consen 113 QHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGC--------RAVGDSSLRTFASNCPNIEHLALYGCK--------K 176 (483)
T ss_pred eeeehhcchhcCCCcceehHhhhhcccccccccccc--------ccCCcchhhHHhhhCCchhhhhhhcce--------e
Confidence 3444441 333444555555555 47999999998 45666666665 489999999998884 5
Q ss_pred cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585 96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 175 (404)
Q Consensus 96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 175 (404)
+++..+..+...|++|++|++..|..+++..++.+.+.|++|++|+++.|+.++..++..+...+..++.+...||...+
T Consensus 177 iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~ 256 (483)
T KOG4341|consen 177 ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE 256 (483)
T ss_pred ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999888998888
Q ss_pred HHHHHHhh-CCCCCCEEeccCCCCCChHHHHhhh-CCCCCCEEEccCC-ccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585 176 SETVKKLA-SSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDK 252 (404)
Q Consensus 176 ~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 252 (404)
.+.+..+. .+..+..+++..|+.+++..+..++ .+..|+.|..+++ .+++..+..+.+++++|+.|.+..|..+++.
T Consensus 257 le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~ 336 (483)
T KOG4341|consen 257 LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR 336 (483)
T ss_pred HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence 88877766 6788888888899889998877665 5788999999886 7889999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEecc
Q 015585 253 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC 332 (404)
Q Consensus 253 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~ 332 (404)
++..+. ..++.|+.+++..|..+++..+..+...|+.|+.|.+++|..++|++++.+....- +...|+.+.+.
T Consensus 337 ~ft~l~----rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c---~~~~l~~lEL~ 409 (483)
T KOG4341|consen 337 GFTMLG----RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC---SLEGLEVLELD 409 (483)
T ss_pred hhhhhh----cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc---cccccceeeec
Confidence 999888 89999999999999888888899999999999999999999999999999987655 67899999999
Q ss_pred CCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccEEE
Q 015585 333 NCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFC 384 (404)
Q Consensus 333 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~ 384 (404)
+|+.+++...+.+. .|+.|+.+++-++.-. ..+.+.+++..+|++++.
T Consensus 410 n~p~i~d~~Le~l~--~c~~Leri~l~~~q~v--tk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 410 NCPLITDATLEHLS--ICRNLERIELIDCQDV--TKEAISRFATHLPNIKVH 457 (483)
T ss_pred CCCCchHHHHHHHh--hCcccceeeeechhhh--hhhhhHHHHhhCccceeh
Confidence 99999999999987 4999999998887743 678899999999999854
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=1.7e-19 Score=186.64 Aligned_cols=330 Identities=16% Similarity=0.122 Sum_probs=155.1
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585 13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT 92 (404)
Q Consensus 13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 92 (404)
+..+++|+.|+|+++.+....+..+...+++|++|++++|... .. ...+.+++|++|+++++.
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~---------~~--~p~~~l~~L~~L~Ls~n~------ 151 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT---------GS--IPRGSIPNLETLDLSNNM------ 151 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc---------cc--cCccccCCCCEEECcCCc------
Confidence 4556666666666655554444444434666666666665221 00 001234556666665532
Q ss_pred ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585 93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 172 (404)
Q Consensus 93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 172 (404)
+... +......+++|+.|+++++. +... +...+..+++|+.|+++++.. .. .+......+++|+.|+++++.
T Consensus 152 ---~~~~-~p~~~~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~L~~n~l-~~-~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 152 ---LSGE-IPNDIGSFSSLKVLDLGGNV-LVGK-IPNSLTNLTSLEFLTLASNQL-VG-QIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred ---cccc-CChHHhcCCCCCEEECccCc-cccc-CChhhhhCcCCCeeeccCCCC-cC-cCChHHcCcCCccEEECcCCc
Confidence 1111 11112345666666666642 2111 111234456666666666642 11 111222355666666666553
Q ss_pred CCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585 173 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 252 (404)
Q Consensus 173 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 252 (404)
+.......+..+++|++|++++| .+.......+..+++|++|++.+|.+.+.....+. .+++|++|++++|. +...
T Consensus 224 -l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~-l~~~ 299 (968)
T PLN00113 224 -LSGEIPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNS-LSGE 299 (968)
T ss_pred -cCCcCChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCe-eccC
Confidence 22222233455666666666663 33333334455566666666666655432222222 35566666666554 2221
Q ss_pred HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEecc
Q 015585 253 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC 332 (404)
Q Consensus 253 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~ 332 (404)
....+ ..+++|++|+++++ .+.......+ ..+++|+.|++++|. ++......+. .+++|+.|+++
T Consensus 300 ~p~~~-----~~l~~L~~L~l~~n-~~~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~p~~l~-------~~~~L~~L~Ls 364 (968)
T PLN00113 300 IPELV-----IQLQNLEILHLFSN-NFTGKIPVAL-TSLPRLQVLQLWSNK-FSGEIPKNLG-------KHNNLTVLDLS 364 (968)
T ss_pred CChhH-----cCCCCCcEEECCCC-ccCCcCChhH-hcCCCCCEEECcCCC-CcCcCChHHh-------CCCCCcEEECC
Confidence 11111 24456666666554 2222111111 234566666665553 3322222222 24555555555
Q ss_pred CCC-----------------------CCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccc
Q 015585 333 NCI-----------------------GLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGC 388 (404)
Q Consensus 333 ~~~-----------------------~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~ 388 (404)
+|. .++......+. .+++|+.|++++|.+++... ..+ ...|.++ +++.+|
T Consensus 365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~--~~~~L~~L~L~~n~l~~~~p---~~~-~~l~~L~~L~Ls~N 438 (968)
T PLN00113 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG--ACRSLRRVRLQDNSFSGELP---SEF-TKLPLVYFLDISNN 438 (968)
T ss_pred CCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh--CCCCCCEEECcCCEeeeECC---hhH-hcCCCCCEEECcCC
Confidence 431 22211111222 36677777777777653211 122 4566676 777777
Q ss_pred cccc
Q 015585 389 EIGC 392 (404)
Q Consensus 389 ~~~~ 392 (404)
.+..
T Consensus 439 ~l~~ 442 (968)
T PLN00113 439 NLQG 442 (968)
T ss_pred cccC
Confidence 6654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=1.6e-19 Score=186.73 Aligned_cols=61 Identities=30% Similarity=0.329 Sum_probs=34.2
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEeccc
Q 015585 13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC 85 (404)
Q Consensus 13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 85 (404)
+..+++|++|+|+++.+....+. ..+++|++|++++|. +.......++.+++|++|+++++
T Consensus 114 ~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~---------~~~~~p~~~~~l~~L~~L~L~~n 174 (968)
T PLN00113 114 FTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNM---------LSGEIPNDIGSFSSLKVLDLGGN 174 (968)
T ss_pred hccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCc---------ccccCChHHhcCCCCCEEECccC
Confidence 34677788888877666533221 235677777777652 22222233455666666666554
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=3.3e-17 Score=148.30 Aligned_cols=167 Identities=26% Similarity=0.311 Sum_probs=77.9
Q ss_pred CCCCEEeccCCCCCChHHH----HhhhCCCCCCEEEccCCccCHHHHHHHHh---cCCCcCEEeecCCCCCcHHHHHHHH
Q 015585 186 RNLEVLDLGGCKSIADTCL----RSISCLRKLTALNLTGADITDSGLSILAQ---GNLPIMNLCLRGCKRVTDKGISHLL 258 (404)
Q Consensus 186 ~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~ 258 (404)
++|++|++++| .++.... ..+..+++|++|++++|.+++.++..++. .+++|++|++++|. +++.+...+.
T Consensus 137 ~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~ 214 (319)
T cd00116 137 PALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALA 214 (319)
T ss_pred CCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHH
Confidence 55566666554 3332221 12234455666666665555544444332 22356666665554 4443333221
Q ss_pred hhcCCCCCCccEEecCCCCCCCHHHHHHHHHhC----CCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCC
Q 015585 259 CVGGTISQSLTTLDLGYMPGISDDGILTIAAAG----IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNC 334 (404)
Q Consensus 259 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 334 (404)
. ....+++|++|+++++ .+++.++..+...+ +.|++|++.+|. +++.+...++..++ .+++|+.+++++
T Consensus 215 ~-~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~---~~~~L~~l~l~~- 287 (319)
T cd00116 215 E-TLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLA---EKESLLELDLRG- 287 (319)
T ss_pred H-HhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHh---cCCCccEEECCC-
Confidence 0 0023455666666554 45554444444332 456666665553 55544544444333 345555555555
Q ss_pred CCCCHHHHHhhhc--CCC-CcccEEecCCc
Q 015585 335 IGLSVDSLRWVKR--PSF-RGLHWLGIGQT 361 (404)
Q Consensus 335 ~~i~~~~~~~l~~--~~~-~~L~~L~l~~~ 361 (404)
+.++..+...+++ ... +.|+.+++.++
T Consensus 288 N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 288 NKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 3455443333321 112 35555555544
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=6.4e-17 Score=146.41 Aligned_cols=280 Identities=22% Similarity=0.189 Sum_probs=182.5
Q ss_pred HHHHHhcCCCCcEEEcCCCCCCCHHHH---HHHHHhCCCCcEEEecCCCCCC-HHH---HHHHHcCCCCccEEEccCCCC
Q 015585 101 MFLLSEGCKGLESVRLGGFSKVSDAGF---AAILLSCHSLKKFEVRSASFLS-DLA---FHDLTGVPCALVEVRLLWCRL 173 (404)
Q Consensus 101 l~~l~~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~~L~~L~l~~~~~~~-~~~---l~~~~~~~~~L~~L~l~~~~~ 173 (404)
...+...+++|+.++++++ .+++.+. ...+...++|++++++++.... ... +......+++|+.|+++++..
T Consensus 15 ~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred hHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 3344445566888888774 5544443 3334455668888887764221 122 223334577899999988763
Q ss_pred CCHHHHHHhhC---CCCCCEEeccCCCCCChHHHHh----hhCC-CCCCEEEccCCccCHHHHHHHH---hcCCCcCEEe
Q 015585 174 ITSETVKKLAS---SRNLEVLDLGGCKSIADTCLRS----ISCL-RKLTALNLTGADITDSGLSILA---QGNLPIMNLC 242 (404)
Q Consensus 174 ~~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~l~~~~l~~l~---~~~~~L~~L~ 242 (404)
.......+.. .++|++|++++| .+.+..... +..+ ++|+.|++++|.+++.+...+. ..+++|++|+
T Consensus 94 -~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 94 -GPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171 (319)
T ss_pred -ChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE
Confidence 3222223332 256999999986 566444433 3456 8999999999999865544443 3567899999
Q ss_pred ecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHH---HHhCCCCceEeecCCCCCCHHHHHHHHhhCCC
Q 015585 243 LRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTI---AAAGIGIIDLCVRSCFYVTDASVEALARKQPD 319 (404)
Q Consensus 243 l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 319 (404)
+++|. +++.++..+... -...+.|++|+++++ .+++.+...+ ...+++|+.|++++|. +++.++..++...+.
T Consensus 172 l~~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~ 247 (319)
T cd00116 172 LANNG-IGDAGIRALAEG-LKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLS 247 (319)
T ss_pred CcCCC-CchHHHHHHHHH-HHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhc
Confidence 99987 776655544310 023469999999997 6776665443 3457899999999995 898888888763220
Q ss_pred cccCCCCcEEeccCCCCCCHHHHHhhh--cCCCCcccEEecCCccccCCChHHHHHHHhcC-CccE-EEeccccc
Q 015585 320 QEKSKQLRRLDLCNCIGLSVDSLRWVK--RPSFRGLHWLGIGQTRLASKGNPVITEIHNER-PWLT-FCLDGCEI 390 (404)
Q Consensus 320 ~~~~~~L~~L~l~~~~~i~~~~~~~l~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~~l~-l~~~~~~~ 390 (404)
..+.|+.|++.+| .+++.+...+. .+.+++|+++++++|.+...+.+.+....... +.++ +++.++++
T Consensus 248 --~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 248 --PNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred --cCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1479999999996 77755554442 23468999999999999654444444443344 5666 77776654
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=3.8e-20 Score=166.83 Aligned_cols=337 Identities=18% Similarity=0.157 Sum_probs=201.4
Q ss_pred ccccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccC
Q 015585 9 LTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHN 88 (404)
Q Consensus 9 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 88 (404)
.+..|..+++|+++.+..|.++ .++.++....+|+.|+|.+|. ++...-+.++.++.||.|||+.+..
T Consensus 94 d~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~---------I~sv~se~L~~l~alrslDLSrN~i- 161 (873)
T KOG4194|consen 94 DFEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNL---------ISSVTSEELSALPALRSLDLSRNLI- 161 (873)
T ss_pred cHHHHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccc---------cccccHHHHHhHhhhhhhhhhhchh-
Confidence 4456789999999999988776 345555557789999999974 3344445566777788888876421
Q ss_pred CCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEc
Q 015585 89 HQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRL 168 (404)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 168 (404)
..+....+ ..-+++++|+++++ .++.-+... +..+.+|..|.++.+. ++.-... .+..++.|+.|++
T Consensus 162 -----s~i~~~sf----p~~~ni~~L~La~N-~It~l~~~~-F~~lnsL~tlkLsrNr-ittLp~r-~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 162 -----SEIPKPSF----PAKVNIKKLNLASN-RITTLETGH-FDSLNSLLTLKLSRNR-ITTLPQR-SFKRLPKLESLDL 228 (873)
T ss_pred -----hcccCCCC----CCCCCceEEeeccc-ccccccccc-ccccchheeeecccCc-ccccCHH-Hhhhcchhhhhhc
Confidence 11111111 12245666666653 333322222 1222345555555443 1111111 1123444444444
Q ss_pred cCCCCCCHHHHH------------------------HhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccC
Q 015585 169 LWCRLITSETVK------------------------KLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 224 (404)
Q Consensus 169 ~~~~~~~~~~~~------------------------~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 224 (404)
..+. +...... ++..+.++++|++.. +.+....-..+-.++.|+.|+++.|.+.
T Consensus 229 nrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 229 NRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred cccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccchhhhh
Confidence 3321 1111011 122466677777766 3444444344456788888888888665
Q ss_pred HHHHHHHHhcCCCcCEEeecCCC--CCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCC
Q 015585 225 DSGLSILAQGNLPIMNLCLRGCK--RVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSC 302 (404)
Q Consensus 225 ~~~l~~l~~~~~~L~~L~l~~~~--~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 302 (404)
......+. .+++|+.|+++++. .+.+..+..+ ..|++|.+++. .++...- .....+.+|++|+|++|
T Consensus 307 rih~d~Ws-ftqkL~~LdLs~N~i~~l~~~sf~~L--------~~Le~LnLs~N-si~~l~e-~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 307 RIHIDSWS-FTQKLKELDLSSNRITRLDEGSFRVL--------SQLEELNLSHN-SIDHLAE-GAFVGLSSLHKLDLRSN 375 (873)
T ss_pred eeecchhh-hcccceeEeccccccccCChhHHHHH--------HHhhhhccccc-chHHHHh-hHHHHhhhhhhhcCcCC
Confidence 54444444 47899999998876 2333444443 48999999884 5544221 22234689999999888
Q ss_pred CCCC---HHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCC
Q 015585 303 FYVT---DASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERP 379 (404)
Q Consensus 303 ~~~~---~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 379 (404)
. ++ +++...+. +++.|++|.+.+ +++.....+.+. .++.|+.|++.+|.+.++..+++..+ .+.
T Consensus 376 ~-ls~~IEDaa~~f~-------gl~~LrkL~l~g-Nqlk~I~krAfs--gl~~LE~LdL~~NaiaSIq~nAFe~m--~Lk 442 (873)
T KOG4194|consen 376 E-LSWCIEDAAVAFN-------GLPSLRKLRLTG-NQLKSIPKRAFS--GLEALEHLDLGDNAIASIQPNAFEPM--ELK 442 (873)
T ss_pred e-EEEEEecchhhhc-------cchhhhheeecC-ceeeecchhhhc--cCcccceecCCCCcceeecccccccc--hhh
Confidence 5 33 22333333 589999999999 688877777775 69999999999999988877777766 445
Q ss_pred ccEEEeccccccccCCc
Q 015585 380 WLTFCLDGCEIGCHDGW 396 (404)
Q Consensus 380 ~l~l~~~~~~~~~~~~~ 396 (404)
.+.+.-.+.-.+|.-.|
T Consensus 443 ~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 443 ELVMNSSSFLCDCQLKW 459 (873)
T ss_pred hhhhcccceEEeccHHH
Confidence 55444444444555444
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=2.1e-19 Score=162.15 Aligned_cols=326 Identities=20% Similarity=0.182 Sum_probs=170.9
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhc-CCCCCceEEecccccCCCCCccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLG-SCHHLTGLSLTRCRHNHQGTFKR 95 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~ 95 (404)
+..+.|++++|.+.+..+..+.. +|+|+++.+..|. + ..++.++ ...+|+.|+|.++. ...
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~n-l~nLq~v~l~~N~---------L--t~IP~f~~~sghl~~L~L~~N~------I~s 139 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYN-LPNLQEVNLNKNE---------L--TRIPRFGHESGHLEKLDLRHNL------ISS 139 (873)
T ss_pred cceeeeeccccccccCcHHHHhc-CCcceeeeeccch---------h--hhcccccccccceeEEeeeccc------ccc
Confidence 34556888888888777766654 8888888888762 2 2233333 45568888887742 233
Q ss_pred cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585 96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 175 (404)
Q Consensus 96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 175 (404)
++.+.+ ...|.|+.||++.+ .++......+ ..-.++++|+++++. ++.-....+ ..+.+|..|.++.+. ++
T Consensus 140 v~se~L----~~l~alrslDLSrN-~is~i~~~sf-p~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsrNr-it 210 (873)
T KOG4194|consen 140 VTSEEL----SALPALRSLDLSRN-LISEIPKPSF-PAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSRNR-IT 210 (873)
T ss_pred ccHHHH----HhHhhhhhhhhhhc-hhhcccCCCC-CCCCCceEEeecccc-ccccccccc-cccchheeeecccCc-cc
Confidence 444444 34568888888873 4433221111 112578888888885 333222221 244578888888754 44
Q ss_pred HHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccC---HHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585 176 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT---DSGLSILAQGNLPIMNLCLRGCKRVTDK 252 (404)
Q Consensus 176 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~---~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 252 (404)
.-....+..+++|+.|++.. +.+.....-.+..+++|+.|.+..|++. |.. +..+.++++|++..+. +...
T Consensus 211 tLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~----Fy~l~kme~l~L~~N~-l~~v 284 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA----FYGLEKMEHLNLETNR-LQAV 284 (873)
T ss_pred ccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcCcccccCcc----eeeecccceeecccch-hhhh
Confidence 44455556688888888866 3444333334445556666655555332 111 1134455555554443 2221
Q ss_pred HHHHHH-------------------hhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHH
Q 015585 253 GISHLL-------------------CVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEAL 313 (404)
Q Consensus 253 ~~~~l~-------------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 313 (404)
.-..+. ...=..+++|+.|+++.. .++.-.-..+ ..+..|++|.|++|. ++...-.++
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf-~~L~~Le~LnLs~Ns-i~~l~e~af 361 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSF-RVLSQLEELNLSHNS-IDHLAEGAF 361 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHH-HHHHHhhhhcccccc-hHHHHhhHH
Confidence 111111 000012345555555442 3322111111 112345555555553 322211111
Q ss_pred HhhCCCcccCCCCcEEeccCCCCCC----HHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccc
Q 015585 314 ARKQPDQEKSKQLRRLDLCNCIGLS----VDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGC 388 (404)
Q Consensus 314 ~~~~~~~~~~~~L~~L~l~~~~~i~----~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~ 388 (404)
- ++++|+.|++.+ +.++ +.+ ..+ ..+++|+.|.+-||.+..+.. .++ .+++.++ +++.+|
T Consensus 362 ~-------~lssL~~LdLr~-N~ls~~IEDaa-~~f--~gl~~LrkL~l~gNqlk~I~k---rAf-sgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 362 V-------GLSSLHKLDLRS-NELSWCIEDAA-VAF--NGLPSLRKLRLTGNQLKSIPK---RAF-SGLEALEHLDLGDN 426 (873)
T ss_pred H-------HhhhhhhhcCcC-CeEEEEEecch-hhh--ccchhhhheeecCceeeecch---hhh-ccCcccceecCCCC
Confidence 1 366777777776 3332 322 222 247888888888888754422 333 5667787 888888
Q ss_pred ccccc
Q 015585 389 EIGCH 393 (404)
Q Consensus 389 ~~~~~ 393 (404)
++...
T Consensus 427 aiaSI 431 (873)
T KOG4194|consen 427 AIASI 431 (873)
T ss_pred cceee
Confidence 87654
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6.8e-17 Score=134.55 Aligned_cols=264 Identities=17% Similarity=0.224 Sum_probs=196.6
Q ss_pred CcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcC-CCCccEEEccCCCCCCHHHHHH-hhCCCCC
Q 015585 111 LESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGV-PCALVEVRLLWCRLITSETVKK-LASSRNL 188 (404)
Q Consensus 111 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L 188 (404)
-+.+|+.+ ..+....+.++.+ .....+++...- ..+..+...+.. -..|+.++++... ++-..+.. +++|++|
T Consensus 138 W~~lDl~~-r~i~p~~l~~l~~--rgV~v~Rlar~~-~~~prlae~~~~frsRlq~lDLS~s~-it~stl~~iLs~C~kL 212 (419)
T KOG2120|consen 138 WQTLDLTG-RNIHPDVLGRLLS--RGVIVFRLARSF-MDQPRLAEHFSPFRSRLQHLDLSNSV-ITVSTLHGILSQCSKL 212 (419)
T ss_pred eeeeccCC-CccChhHHHHHHh--CCeEEEEcchhh-hcCchhhhhhhhhhhhhHHhhcchhh-eeHHHHHHHHHHHHhh
Confidence 34456655 4555544555443 344455554331 122222222211 2458899998743 66555544 4589999
Q ss_pred CEEeccCCCCCChHHHHhhhCCCCCCEEEccCC-ccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCC
Q 015585 189 EVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQS 267 (404)
Q Consensus 189 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~ 267 (404)
+.|.+.+ ..+.+.....++...+|+.|+++.+ +++..++..+...|..|..|++++|...++. +..+.. .--++
T Consensus 213 k~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~---hise~ 287 (419)
T KOG2120|consen 213 KNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVA---HISET 287 (419)
T ss_pred hhccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHh---hhchh
Confidence 9999999 5889999999999999999999987 8999999999999999999999999854444 333321 34578
Q ss_pred ccEEecCCCC-CCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhh
Q 015585 268 LTTLDLGYMP-GISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK 346 (404)
Q Consensus 268 L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~ 346 (404)
|..|+++++. ++....+..+.+.||+|.+|++++|..+++..+..+.+ ++.|++|.++.|..|.+..+-.+.
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-------f~~L~~lSlsRCY~i~p~~~~~l~ 360 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-------FNYLQHLSLSRCYDIIPETLLELN 360 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-------cchheeeehhhhcCCChHHeeeec
Confidence 9999999984 44556678888899999999999999999988888885 999999999999999988887775
Q ss_pred cCCCCcccEEecCCccccCCChHHHHHHHhcCCccEEEeccccccccCCcc
Q 015585 347 RPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQ 397 (404)
Q Consensus 347 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 397 (404)
..|+|.+|++-|+. .+.+++-+.+.+|.+++..-...+-+.+--+
T Consensus 361 --s~psl~yLdv~g~v----sdt~mel~~e~~~~lkin~q~~~~iarpv~~ 405 (419)
T KOG2120|consen 361 --SKPSLVYLDVFGCV----SDTTMELLKEMLSHLKINCQHFNFIARPVSG 405 (419)
T ss_pred --cCcceEEEEecccc----CchHHHHHHHhCccccccceeeeeeeccccc
Confidence 59999999999998 6778888999999998765555555544333
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.1e-16 Score=133.38 Aligned_cols=203 Identities=19% Similarity=0.255 Sum_probs=142.2
Q ss_pred CCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccC
Q 015585 18 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVN 97 (404)
Q Consensus 18 ~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 97 (404)
.|+++||+...++...+..+...|..|+.|.+.+. .+.+.....+++-.+|+.|++++|. +++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~---------~LdD~I~~~iAkN~~L~~lnlsm~s--------G~t 248 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL---------RLDDPIVNTIAKNSNLVRLNLSMCS--------GFT 248 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc---------ccCcHHHHHHhccccceeecccccc--------ccc
Confidence 47788888878888888888777888888888884 5666666667777788888887773 467
Q ss_pred hhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHH-hCCCCcEEEecCCC-CCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585 98 DMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILL-SCHSLKKFEVRSAS-FLSDLAFHDLTGVPCALVEVRLLWCRLIT 175 (404)
Q Consensus 98 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 175 (404)
..++..+...|..|.+|++++|...++. +..++. --++|+.|+++|+. .+....+..+...||+|.+|+++.|..+.
T Consensus 249 ~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 249 ENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred hhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 7777777778888888888887555544 333332 33677888888773 23344566677778888888888877777
Q ss_pred HHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcC
Q 015585 176 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 239 (404)
Q Consensus 176 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~ 239 (404)
+..+..+.+++.|++|.++.|..+....+..+...|.|.+|++.++ ++|..+..+.+.+++|+
T Consensus 328 ~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~-vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 328 NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC-VSDTTMELLKEMLSHLK 390 (419)
T ss_pred chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc-cCchHHHHHHHhCcccc
Confidence 7777777778888888888877777777767777777777777664 33334444444455543
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.56 E-value=3.9e-14 Score=120.87 Aligned_cols=254 Identities=21% Similarity=0.258 Sum_probs=158.2
Q ss_pred hCCCccEEeecCCCCCCcccccccchhhhhh----hcCCCCCceEEecccccCCCCCccccCh---hhHHHH---HhcCC
Q 015585 40 SLPFLVELDLEDRPNTEPLARLDLTSSGLQS----LGSCHHLTGLSLTRCRHNHQGTFKRVND---MGMFLL---SEGCK 109 (404)
Q Consensus 40 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~l~~l---~~~~~ 109 (404)
....++++++++| .+.....+. ++..++|+..++++.. -.+..+ ..+..+ ...+|
T Consensus 28 ~~~s~~~l~lsgn---------t~G~EAa~~i~~~L~~~~~L~~v~~sd~f------tGR~~~Ei~e~L~~l~~aL~~~~ 92 (382)
T KOG1909|consen 28 PMDSLTKLDLSGN---------TFGTEAARAIAKVLASKKELREVNLSDMF------TGRLKDEIPEALKMLSKALLGCP 92 (382)
T ss_pred ccCceEEEeccCC---------chhHHHHHHHHHHHhhcccceeeehHhhh------cCCcHHHHHHHHHHHHHHHhcCC
Confidence 3566777777775 233333333 3455666766665521 011111 112222 24567
Q ss_pred CCcEEEcCCCCCCC---HHHHHHHHHhCCCCcEEEecCCCCCCHHHH------------HHHHcCCCCccEEEccCCCCC
Q 015585 110 GLESVRLGGFSKVS---DAGFAAILLSCHSLKKFEVRSASFLSDLAF------------HDLTGVPCALVEVRLLWCRLI 174 (404)
Q Consensus 110 ~L~~L~l~~~~~~~---~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l------------~~~~~~~~~L~~L~l~~~~~~ 174 (404)
+|+.|+||++ .+. ..++..+++.|..|++|.+.+|. +....- .......+.|+.+....+. +
T Consensus 93 ~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-l 169 (382)
T KOG1909|consen 93 KLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-L 169 (382)
T ss_pred ceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-c
Confidence 8888888774 333 33556667777888888887774 322211 1122345788888887754 4
Q ss_pred CHHHHHHhh----CCCCCCEEeccCCCCCChHHHH----hhhCCCCCCEEEccCCccCHHHHHHHHh---cCCCcCEEee
Q 015585 175 TSETVKKLA----SSRNLEVLDLGGCKSIADTCLR----SISCLRKLTALNLTGADITDSGLSILAQ---GNLPIMNLCL 243 (404)
Q Consensus 175 ~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~~~l~~l~~---~~~~L~~L~l 243 (404)
.+.+...++ .++.|+.+.+.. +.+...++. .+.++++|+.|++.+|.++..+-..++. .+++|+.|++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 444444444 568899998887 466655553 3458899999999998888776666655 4567888888
Q ss_pred cCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH---HhCCCCceEeecCCCCC--CHHHHHHHHh
Q 015585 244 RGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYV--TDASVEALAR 315 (404)
Q Consensus 244 ~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~--~~~~~~~l~~ 315 (404)
++|- +...+...+..+.....|.|+.|.+.++ .++..+...+. ...|.|+.|++.+|. + .++++..++.
T Consensus 249 ~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~-l~e~de~i~ei~~ 322 (382)
T KOG1909|consen 249 GDCL-LENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR-LGEKDEGIDEIAS 322 (382)
T ss_pred cccc-cccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc-ccccchhHHHHHH
Confidence 8886 6555555444333356788999999886 67665543332 225889999999885 6 6677777776
No 12
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.55 E-value=3.9e-14 Score=135.79 Aligned_cols=241 Identities=25% Similarity=0.424 Sum_probs=118.6
Q ss_pred CCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCC-CCCCCHH--HHHHHHHhCCCCcEEEecCCCCCC
Q 015585 73 SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGG-FSKVSDA--GFAAILLSCHSLKKFEVRSASFLS 149 (404)
Q Consensus 73 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~-~~~~~~~--~~~~l~~~~~~L~~L~l~~~~~~~ 149 (404)
.++.|+.|.+.+|. .+.+.++..+...+++|+.|++++ +...... ....+...|++|+.|+++.+..++
T Consensus 186 ~~~~L~~l~l~~~~--------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCS--------KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred hCchhhHhhhcccc--------cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 45666666665542 244444445555566666666654 2222221 122344555666666666665556
Q ss_pred HHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhh-CCCCCCEEeccCCCCCChHHHHhhh-CCCCCCEEEccCCc----c
Q 015585 150 DLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGAD----I 223 (404)
Q Consensus 150 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~----l 223 (404)
+..+..+...|++|+.|.+.+|..+++.++..++ .|+.|++|++++|..+++..+..+. .+++++.|.+.... +
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l 337 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSL 337 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccH
Confidence 6666666555666666665555555556655555 4566666666666555555444432 35555554433321 2
Q ss_pred CH------------HHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhC
Q 015585 224 TD------------SGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG 291 (404)
Q Consensus 224 ~~------------~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 291 (404)
++ .........+++++.+.+..+. ..+.+. .+.+.+|+.++ ..+......+
T Consensus 338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~---------------~~~l~gc~~l~-~~l~~~~~~~ 400 (482)
T KOG1947|consen 338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL---------------ELSLRGCPNLT-ESLELRLCRS 400 (482)
T ss_pred HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch---------------HHHhcCCcccc-hHHHHHhccC
Confidence 22 2222223334444444443333 222222 22223333333 3333332233
Q ss_pred CCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHh
Q 015585 292 IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRW 344 (404)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 344 (404)
..++.|.+..|..+++..+..... .+.+++.+++.+|..++......
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~------~~~~~~~l~~~~~~~~~~~~~~~ 447 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLAD------SCSNLKDLDLSGCRVITLKSLEG 447 (482)
T ss_pred CccceEecccCccccccchHHHhh------hhhccccCCccCcccccchhhhh
Confidence 336666666666666666665554 35556666666666665555443
No 13
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.54 E-value=1.4e-13 Score=117.47 Aligned_cols=270 Identities=18% Similarity=0.184 Sum_probs=178.9
Q ss_pred HHHHHhcCCCCcEEEcCCCCCCCHHHH---HHHHHhCCCCcEEEecCC--CCCCHH------HHHHHHcCCCCccEEEcc
Q 015585 101 MFLLSEGCKGLESVRLGGFSKVSDAGF---AAILLSCHSLKKFEVRSA--SFLSDL------AFHDLTGVPCALVEVRLL 169 (404)
Q Consensus 101 l~~l~~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~~L~~L~l~~~--~~~~~~------~l~~~~~~~~~L~~L~l~ 169 (404)
+.........+++++++++ .+..... ...+...++|+..++++. ..+... .+......+|.|+.|+++
T Consensus 22 v~~~~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 3333455678999999995 4444433 333455577888777765 111111 123334567899999999
Q ss_pred CCCCCCHHHHHHh----hCCCCCCEEeccCCCCCChHHHHhh-------------hCCCCCCEEEccCCccCHHHHHHHH
Q 015585 170 WCRLITSETVKKL----ASSRNLEVLDLGGCKSIADTCLRSI-------------SCLRKLTALNLTGADITDSGLSILA 232 (404)
Q Consensus 170 ~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~l~~~~l~~l~ 232 (404)
.+. +...+++.+ .+|..|++|.|.+| +++..+-..+ +..++|+.+..++|++.+.+-..++
T Consensus 101 DNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 101 DNA-FGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred ccc-cCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence 875 455555543 37899999999987 5655443332 2467899999999988777665554
Q ss_pred ---hcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH---HhCCCCceEeecCCCCCC
Q 015585 233 ---QGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYVT 306 (404)
Q Consensus 233 ---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~ 306 (404)
+.++.|+.+.+..+. +...++..+.. ....+|+|+.|++.+. -.+..+-..+. ..+++|++|.+++| .+.
T Consensus 179 ~~~~~~~~leevr~~qN~-I~~eG~~al~e-al~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dc-ll~ 254 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNG-IRPEGVTALAE-ALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDC-LLE 254 (382)
T ss_pred HHHHhccccceEEEeccc-ccCchhHHHHH-HHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeeccccc-ccc
Confidence 366889999988776 55555422211 1147889999999884 45554433333 34678889999999 477
Q ss_pred HHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhc--CCCCcccEEecCCccccCCChHHHHHHHhcCCcc
Q 015585 307 DASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR--PSFRGLHWLGIGQTRLASKGNPVITEIHNERPWL 381 (404)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l 381 (404)
..|..++...+.. ..|+|+.|.+.+ +.|+..+...+.. ...|.|+.|++++|.+. ..++.+..++...+..
T Consensus 255 ~~Ga~a~~~al~~--~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN~l~-e~de~i~ei~~~~~~~ 327 (382)
T KOG1909|consen 255 NEGAIAFVDALKE--SAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGNRLG-EKDEGIDEIASKFDTA 327 (382)
T ss_pred cccHHHHHHHHhc--cCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCccccc-ccchhHHHHHHhcccc
Confidence 6666666554442 578999999999 4788766665531 23789999999999986 4577777777666543
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.50 E-value=7.9e-14 Score=145.33 Aligned_cols=128 Identities=20% Similarity=0.168 Sum_probs=73.9
Q ss_pred CCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHH
Q 015585 210 LRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA 289 (404)
Q Consensus 210 ~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 289 (404)
.++|+.|++++|......... ...+++|+.|++++|..+... . ....+++|+.|++++|..+.. +..
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~L-----P--~~~~L~sL~~L~Ls~c~~L~~-----~p~ 843 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETL-----P--TGINLESLESLDLSGCSRLRT-----FPD 843 (1153)
T ss_pred cccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCee-----C--CCCCccccCEEECCCCCcccc-----ccc
Confidence 457777777776322211112 235778888888877644321 1 012467788888888765432 112
Q ss_pred hCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585 290 AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR 362 (404)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 362 (404)
..++|+.|+++++. ++... ..+. .+++|+.|++.+|++++..... ...+++|+.+++++|.
T Consensus 844 ~~~nL~~L~Ls~n~-i~~iP-~si~-------~l~~L~~L~L~~C~~L~~l~~~---~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 844 ISTNISDLNLSRTG-IEEVP-WWIE-------KFSNLSFLDMNGCNNLQRVSLN---ISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccCEeECCCCC-CccCh-HHHh-------cCCCCCEEECCCCCCcCccCcc---cccccCCCeeecCCCc
Confidence 23577888887764 44211 1222 4778888888888877653221 1236677777777664
No 15
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.49 E-value=1.8e-13 Score=131.23 Aligned_cols=222 Identities=30% Similarity=0.425 Sum_probs=99.7
Q ss_pred HHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccC-CCCCCHHH--HHHhh-CCCCCCEEeccCCCCCChHHHHh
Q 015585 131 LLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLW-CRLITSET--VKKLA-SSRNLEVLDLGGCKSIADTCLRS 206 (404)
Q Consensus 131 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~--~~~l~-~~~~L~~L~l~~~~~~~~~~~~~ 206 (404)
...++.|+.+.+.++..++...+..+...++.|++|++++ +....... ...+. .|++|+.|++++|..+++..+..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 3334455555555444444444444444445555555444 11111111 11111 34445555555443344444444
Q ss_pred hhC-CCCCCEEEccCCc-cCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCC---CCCCH
Q 015585 207 ISC-LRKLTALNLTGAD-ITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM---PGISD 281 (404)
Q Consensus 207 l~~-~~~L~~L~l~~~~-l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~---~~l~~ 281 (404)
++. +++|+.|.+..+. +++.++..++..+++|++|++++|..+++.++.... ..+++++.|.+..+ ..+++
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~----~~c~~l~~l~~~~~~~c~~l~~ 339 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL----KNCPNLRELKLLSLNGCPSLTD 339 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH----HhCcchhhhhhhhcCCCccHHH
Confidence 432 4455555544443 455555555554555555555555444444444333 23343333332222 12222
Q ss_pred HHHH------------HHHHhCCCCceEee--------------cCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585 282 DGIL------------TIAAAGIGIIDLCV--------------RSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 335 (404)
Q Consensus 282 ~~~~------------~l~~~~~~L~~L~l--------------~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 335 (404)
..+. ...+.|++++.+.+ .+|+.++ ..+..... .+..++.|+++.|.
T Consensus 340 ~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~~------~~~~l~~L~l~~~~ 412 (482)
T KOG1947|consen 340 LSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRLC------RSDSLRVLNLSDCR 412 (482)
T ss_pred HHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHhc------cCCccceEecccCc
Confidence 2211 11222333333333 3444443 33333332 23335777888877
Q ss_pred CCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585 336 GLSVDSLRWVKRPSFRGLHWLGIGQTRLA 364 (404)
Q Consensus 336 ~i~~~~~~~l~~~~~~~L~~L~l~~~~l~ 364 (404)
.++...+...... +..++.+++.++...
T Consensus 413 ~~t~~~l~~~~~~-~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 413 LVTDKGLRCLADS-CSNLKDLDLSGCRVI 440 (482)
T ss_pred cccccchHHHhhh-hhccccCCccCcccc
Confidence 7777777666522 666777777776643
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=4.8e-13 Score=139.51 Aligned_cols=104 Identities=14% Similarity=0.228 Sum_probs=51.5
Q ss_pred CCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHH
Q 015585 235 NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALA 314 (404)
Q Consensus 235 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (404)
+++|+.|.+++|..+.... ..+ ..+++|+.|++++|..+...... ..+++|+.|++++|..+. .+.
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP-~si-----~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~-----~~p 842 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELP-SSI-----QNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLR-----TFP 842 (1153)
T ss_pred cccchheeCCCCCCccccC-hhh-----hCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccc-----ccc
Confidence 3456666666654322211 111 24566666666666544321100 024566666666665332 111
Q ss_pred hhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585 315 RKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR 362 (404)
Q Consensus 315 ~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 362 (404)
. ...+|+.|+++++ .++.... .+ ..+++|+.|++++|.
T Consensus 843 ~------~~~nL~~L~Ls~n-~i~~iP~-si--~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 843 D------ISTNISDLNLSRT-GIEEVPW-WI--EKFSNLSFLDMNGCN 880 (1153)
T ss_pred c------cccccCEeECCCC-CCccChH-HH--hcCCCCCEEECCCCC
Confidence 1 2346677777663 4443211 12 247778888887754
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.40 E-value=4.4e-15 Score=135.78 Aligned_cols=332 Identities=16% Similarity=0.121 Sum_probs=160.3
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCccc-c-------------cccchhhhh-hhcCCCCC
Q 015585 13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLA-R-------------LDLTSSGLQ-SLGSCHHL 77 (404)
Q Consensus 13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~-~-------------~~~~~~~~~-~l~~~~~L 77 (404)
....+.+++|.|....+. ..+..++. +.+|++|.+.+|+..+... . .++...+++ .|-.++.|
T Consensus 28 v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred HHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence 445667788888765544 23444443 7777777777753211000 0 011112211 12334445
Q ss_pred ceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHH
Q 015585 78 TGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLT 157 (404)
Q Consensus 78 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~ 157 (404)
..|+++++. ++.+ +..+ ....++-.|+++++ ++... ..+++-++.-|-.|+++++.. ..++...
T Consensus 106 t~lDLShNq------L~Ev-P~~L----E~AKn~iVLNLS~N-~IetI-Pn~lfinLtDLLfLDLS~NrL---e~LPPQ~ 169 (1255)
T KOG0444|consen 106 TILDLSHNQ------LREV-PTNL----EYAKNSIVLNLSYN-NIETI-PNSLFINLTDLLFLDLSNNRL---EMLPPQI 169 (1255)
T ss_pred eeeecchhh------hhhc-chhh----hhhcCcEEEEcccC-ccccC-CchHHHhhHhHhhhccccchh---hhcCHHH
Confidence 555554421 0001 0111 12234445555542 22111 011222233444455555431 2233333
Q ss_pred cCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCC
Q 015585 158 GVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLP 237 (404)
Q Consensus 158 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~ 237 (404)
.++..|++|.++++. +....+..++.+..|++|.+++....-+.....+..+.+|..++++.|+++- +..-...+++
T Consensus 170 RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~ 246 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRN 246 (1255)
T ss_pred HHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhh
Confidence 455667777777754 4444455556666777777776433222233344556777788887776542 1111224677
Q ss_pred cCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhC
Q 015585 238 IMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQ 317 (404)
Q Consensus 238 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 317 (404)
|+.|+++++. ++...+.. ..+.+|++|+++.. .++.-. ..++ .++.|+.|.+.+|. ++-+++-.-..
T Consensus 247 LrrLNLS~N~-iteL~~~~------~~W~~lEtLNlSrN-QLt~LP-~avc-KL~kL~kLy~n~Nk-L~FeGiPSGIG-- 313 (1255)
T KOG0444|consen 247 LRRLNLSGNK-ITELNMTE------GEWENLETLNLSRN-QLTVLP-DAVC-KLTKLTKLYANNNK-LTFEGIPSGIG-- 313 (1255)
T ss_pred hheeccCcCc-eeeeeccH------HHHhhhhhhccccc-hhccch-HHHh-hhHHHHHHHhccCc-ccccCCccchh--
Confidence 8888888776 54432211 12447777777774 433211 1122 24667777776663 55333322221
Q ss_pred CCcccCCCCcEEeccCCCCCC--HHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEecccccccc
Q 015585 318 PDQEKSKQLRRLDLCNCIGLS--VDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 393 (404)
Q Consensus 318 ~~~~~~~~L~~L~l~~~~~i~--~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~ 393 (404)
++.+|+.+...+ +++. +++ + ..|++|+.|.++.|++.+. .+ ++ -.+|.++ ++++.|+.--+
T Consensus 314 ----KL~~Levf~aan-N~LElVPEg---l--cRC~kL~kL~L~~NrLiTL-Pe---aI-HlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 314 ----KLIQLEVFHAAN-NKLELVPEG---L--CRCVKLQKLKLDHNRLITL-PE---AI-HLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred ----hhhhhHHHHhhc-cccccCchh---h--hhhHHHHHhcccccceeec-hh---hh-hhcCCcceeeccCCcCccC
Confidence 344566666555 2322 222 1 2467777777777776543 11 22 2346666 66666665444
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=8.2e-13 Score=116.05 Aligned_cols=212 Identities=20% Similarity=0.103 Sum_probs=114.3
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhh-hcCCCCCceEEecccccCCCCC
Q 015585 14 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQS-LGSCHHLTGLSLTRCRHNHQGT 92 (404)
Q Consensus 14 ~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~ 92 (404)
+.+.+|+.+.|.+..+........++.|++++.|+|+.|-. -....+.. ..++|+|+.|+++.+...
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~--------~nw~~v~~i~eqLp~Le~LNls~Nrl~---- 185 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLF--------HNWFPVLKIAEQLPSLENLNLSSNRLS---- 185 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhH--------HhHHHHHHHHHhcccchhccccccccc----
Confidence 34566677777765555444445556677777777776521 01122222 346777777777664311
Q ss_pred ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585 93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 172 (404)
Q Consensus 93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 172 (404)
..++.... ..+++|+.|.++.| +++...+..++..+|+|+.|.+..+..+...... ...++.|++|+|+++.
T Consensus 186 --~~~~s~~~---~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 186 --NFISSNTT---LLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNN 257 (505)
T ss_pred --CCccccch---hhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCc
Confidence 11111111 13466777777776 5666677777777777777777766322211111 1133567777777766
Q ss_pred CCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHh------hhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCC
Q 015585 173 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRS------ISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGC 246 (404)
Q Consensus 173 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~------l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 246 (404)
.+....+..++.++.|+.|+++.| ++.+-.... ....++|++|++..|.+.+.....-.+..++|++|.+..+
T Consensus 258 li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 258 LIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 555444445556777777777664 333322211 1356777777777776643322111223556666655443
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.28 E-value=4.5e-14 Score=129.29 Aligned_cols=300 Identities=17% Similarity=0.134 Sum_probs=153.4
Q ss_pred cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585 12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG 91 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 91 (404)
.++.+|.|+.+++..|.+....++.=.-++.-|+.|+|+.|+ +. +....+.+.+++-.|+++++.
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq---------L~-EvP~~LE~AKn~iVLNLS~N~----- 137 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ---------LR-EVPTNLEYAKNSIVLNLSYNN----- 137 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh---------hh-hcchhhhhhcCcEEEEcccCc-----
Confidence 345555666665554444333222211235666777777652 21 223345677889999998853
Q ss_pred CccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCC
Q 015585 92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC 171 (404)
Q Consensus 92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 171 (404)
...+... ++.++..|-.|+++++ .+.. +..-++.+.+|++|++++++ +....+..+ ..++.|+.|.+++.
T Consensus 138 -IetIPn~----lfinLtDLLfLDLS~N-rLe~--LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQL-PsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 138 -IETIPNS----LFINLTDLLFLDLSNN-RLEM--LPPQIRRLSMLQTLKLSNNP-LNHFQLRQL-PSMTSLSVLHMSNT 207 (1255)
T ss_pred -cccCCch----HHHhhHhHhhhccccc-hhhh--cCHHHHHHhhhhhhhcCCCh-hhHHHHhcC-ccchhhhhhhcccc
Confidence 2223332 2345567777888873 3322 22225566788888888886 332222222 23445566666664
Q ss_pred CCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcH
Q 015585 172 RLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTD 251 (404)
Q Consensus 172 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~ 251 (404)
....+.....+-.+.+|..++++. ++++- ....+-.+++|+.|++++|.++.-.+.. ....+|+.|+++++. ++.
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~-vPecly~l~~LrrLNLS~N~iteL~~~~--~~W~~lEtLNlSrNQ-Lt~ 282 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSE-NNLPI-VPECLYKLRNLRRLNLSGNKITELNMTE--GEWENLETLNLSRNQ-LTV 282 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccc-cCCCc-chHHHhhhhhhheeccCcCceeeeeccH--HHHhhhhhhccccch-hcc
Confidence 432222222233567778888876 34432 2344456778888888888776432211 123567777777765 322
Q ss_pred HHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEec
Q 015585 252 KGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDL 331 (404)
Q Consensus 252 ~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l 331 (404)
. ...++ .++.|+.|.+... .++-.|+..=...+.+|+.+...+|. + +..-+.+. .|+.|+.|.+
T Consensus 283 L-P~avc-----KL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~-L-ElVPEglc-------RC~kL~kL~L 346 (1255)
T KOG0444|consen 283 L-PDAVC-----KLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNK-L-ELVPEGLC-------RCVKLQKLKL 346 (1255)
T ss_pred c-hHHHh-----hhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccc-c-ccCchhhh-------hhHHHHHhcc
Confidence 1 11122 4556666665542 44433322211223455555555542 1 11122233 3666666666
Q ss_pred cCCCCCC-HHHHHhhhcCCCCcccEEecCCcc
Q 015585 332 CNCIGLS-VDSLRWVKRPSFRGLHWLGIGQTR 362 (404)
Q Consensus 332 ~~~~~i~-~~~~~~l~~~~~~~L~~L~l~~~~ 362 (404)
..+..|| ++++ +.+|.|++|++..|+
T Consensus 347 ~~NrLiTLPeaI-----HlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 347 DHNRLITLPEAI-----HLLPDLKVLDLRENP 373 (1255)
T ss_pred cccceeechhhh-----hhcCCcceeeccCCc
Confidence 6644444 2222 225566666666554
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=9.4e-11 Score=103.35 Aligned_cols=188 Identities=16% Similarity=0.123 Sum_probs=101.6
Q ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCC
Q 015585 106 EGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASS 185 (404)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 185 (404)
..+.+|+++.+.++ .+...+.....+.|++++.|+++.+-.-....+..++.++|+|+.|+++.+.......-..-..+
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 34556777777663 55555554567777888888888775555666777777788888887776542211110001135
Q ss_pred CCCCEEeccCCCCCChHHHHhh-hCCCCCCEEEccCCc-cCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCC
Q 015585 186 RNLEVLDLGGCKSIADTCLRSI-SCLRKLTALNLTGAD-ITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGT 263 (404)
Q Consensus 186 ~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~-l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 263 (404)
++|+.|.++.| +++...+..+ ..+|+|+.|.+..|. +....... .-+..|+.|+|+++..+.-+.+... .
T Consensus 197 ~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~-----~ 268 (505)
T KOG3207|consen 197 SHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKV-----G 268 (505)
T ss_pred hhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccccccccc-----c
Confidence 66777777776 4555544433 456777777776652 21111000 0134566667766654433322222 2
Q ss_pred CCCCccEEecCCCCCCCHHHH-----HHHHHhCCCCceEeecCCC
Q 015585 264 ISQSLTTLDLGYMPGISDDGI-----LTIAAAGIGIIDLCVRSCF 303 (404)
Q Consensus 264 ~~~~L~~L~l~~~~~l~~~~~-----~~l~~~~~~L~~L~l~~~~ 303 (404)
.+|.|..|.++.+ .+++... ......+++|+.|++..|+
T Consensus 269 ~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 269 TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence 5566666666654 3333111 1111234666666666654
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.95 E-value=2.2e-09 Score=105.18 Aligned_cols=260 Identities=15% Similarity=0.099 Sum_probs=153.6
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 96 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 96 (404)
..-..|+++.+.++ ..+..+. ++|+.|.+.+|.. +. ++ ...++|++|+++++. +..+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~L---------t~--LP--~lp~~Lk~LdLs~N~------LtsL 257 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNL---------TS--LP--ALPPELRTLEVSGNQ------LTSL 257 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcC---------CC--CC--CCCCCCcEEEecCCc------cCcc
Confidence 44567788876666 2333332 4788888888632 21 11 124788999997753 2222
Q ss_pred ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585 97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 176 (404)
Q Consensus 97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 176 (404)
+ ...++|+.|+++++ .++. +.. ...+|+.|+++++. ++. + ....++|+.|+++++. +..
T Consensus 258 P--------~lp~sL~~L~Ls~N-~L~~--Lp~---lp~~L~~L~Ls~N~-Lt~--L---P~~p~~L~~LdLS~N~-L~~ 316 (788)
T PRK15387 258 P--------VLPPGLLELSIFSN-PLTH--LPA---LPSGLCKLWIFGNQ-LTS--L---PVLPPGLQELSVSDNQ-LAS 316 (788)
T ss_pred c--------CcccccceeeccCC-chhh--hhh---chhhcCEEECcCCc-ccc--c---cccccccceeECCCCc-ccc
Confidence 2 12367888888874 3332 222 23578888888874 321 1 1234678999998864 321
Q ss_pred HHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHH
Q 015585 177 ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH 256 (404)
Q Consensus 177 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 256 (404)
+.. ....|+.|.++++ .++. ++. -.++|+.|++++|.++. + ....++|+.|.++++. +..
T Consensus 317 --Lp~--lp~~L~~L~Ls~N-~L~~--LP~--lp~~Lq~LdLS~N~Ls~--L---P~lp~~L~~L~Ls~N~-L~~----- 376 (788)
T PRK15387 317 --LPA--LPSELCKLWAYNN-QLTS--LPT--LPSGLQELSVSDNQLAS--L---PTLPSELYKLWAYNNR-LTS----- 376 (788)
T ss_pred --CCC--CcccccccccccC-cccc--ccc--cccccceEecCCCccCC--C---CCCCcccceehhhccc-ccc-----
Confidence 111 1246778888774 4432 111 12478999999887764 1 1224578888887765 432
Q ss_pred HHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCC
Q 015585 257 LLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG 336 (404)
Q Consensus 257 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 336 (404)
+. ...++|+.|+++++ .++. +....++|+.|++++|. ++. +.. ...+|+.|++++ +.
T Consensus 377 LP----~l~~~L~~LdLs~N-~Lt~-----LP~l~s~L~~LdLS~N~-Lss-----IP~------l~~~L~~L~Ls~-Nq 433 (788)
T PRK15387 377 LP----ALPSGLKELIVSGN-RLTS-----LPVLPSELKELMVSGNR-LTS-----LPM------LPSGLLSLSVYR-NQ 433 (788)
T ss_pred Cc----ccccccceEEecCC-cccC-----CCCcccCCCEEEccCCc-CCC-----CCc------chhhhhhhhhcc-Cc
Confidence 11 12357899999885 4542 11123679999999885 542 222 134678888888 46
Q ss_pred CCHHHHHhhhcCCCCcccEEecCCccccCC
Q 015585 337 LSVDSLRWVKRPSFRGLHWLGIGQTRLASK 366 (404)
Q Consensus 337 i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~ 366 (404)
++.... .+. .+++|+.|++++|++++.
T Consensus 434 Lt~LP~-sl~--~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 434 LTRLPE-SLI--HLSSETTVNLEGNPLSER 460 (788)
T ss_pred ccccCh-HHh--hccCCCeEECCCCCCCch
Confidence 664221 222 378999999999998644
No 22
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.88 E-value=1.7e-08 Score=98.50 Aligned_cols=160 Identities=17% Similarity=0.176 Sum_probs=78.7
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCC
Q 015585 135 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT 214 (404)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 214 (404)
.+|++|++++...+...-...+...+|.|++|.+.+-....++.......+|+|..|+++++ +++.. ..++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccHH
Confidence 45566666655444444444455555666666666544333332222225566666666653 33322 3344555566
Q ss_pred EEEccCCccCH-HHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCC
Q 015585 215 ALNLTGADITD-SGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIG 293 (404)
Q Consensus 215 ~L~l~~~~l~~-~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 293 (404)
.|.+.+-.+.. ..+..++. +.+|+.|+++.........+....-..+..+|.|+.||.++ +.++...++.+.++-|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHPN 276 (699)
T ss_pred HHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCcc
Confidence 65555544433 33444442 56666666655443332211111111334566666666665 35555555555555455
Q ss_pred CceEee
Q 015585 294 IIDLCV 299 (404)
Q Consensus 294 L~~L~l 299 (404)
|+.+..
T Consensus 277 L~~i~~ 282 (699)
T KOG3665|consen 277 LQQIAA 282 (699)
T ss_pred Hhhhhh
Confidence 554443
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.87 E-value=1.7e-10 Score=110.63 Aligned_cols=222 Identities=19% Similarity=0.181 Sum_probs=130.5
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCC
Q 015585 109 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNL 188 (404)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 188 (404)
.+|+.++++.+ +.. .+...+..|.+|+.++...+.. ..+..-.....+|+.|.+..+. +.. ....+.+...|
T Consensus 241 ~nl~~~dis~n-~l~--~lp~wi~~~~nle~l~~n~N~l---~~lp~ri~~~~~L~~l~~~~ne-l~y-ip~~le~~~sL 312 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLS--NLPEWIGACANLEALNANHNRL---VALPLRISRITSLVSLSAAYNE-LEY-IPPFLEGLKSL 312 (1081)
T ss_pred ccceeeecchh-hhh--cchHHHHhcccceEecccchhH---HhhHHHHhhhhhHHHHHhhhhh-hhh-CCCccccccee
Confidence 36888888773 322 2335567788888888887752 1122212234556666555442 110 00111245667
Q ss_pred CEEeccCCCCCChHH----------HHhh---------------hCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEee
Q 015585 189 EVLDLGGCKSIADTC----------LRSI---------------SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCL 243 (404)
Q Consensus 189 ~~L~l~~~~~~~~~~----------~~~l---------------~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l 243 (404)
++|++.. +.+.+-. ...+ ...+.|+.|.+.+|.++|..+..+. +.++|+.|.+
T Consensus 313 ~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhL 390 (1081)
T KOG0618|consen 313 RTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHL 390 (1081)
T ss_pred eeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeee
Confidence 7777765 2332211 0111 0234567788888888888777665 4788999999
Q ss_pred cCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccC
Q 015585 244 RGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKS 323 (404)
Q Consensus 244 ~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~ 323 (404)
+++. ++.-.-..+ ..++.|++|.+++. .++.-. ..+ ..|+.|+.|...+|. +.. +-.++. .
T Consensus 391 syNr-L~~fpas~~-----~kle~LeeL~LSGN-kL~~Lp-~tv-a~~~~L~tL~ahsN~-l~~--fPe~~~-------l 451 (1081)
T KOG0618|consen 391 SYNR-LNSFPASKL-----RKLEELEELNLSGN-KLTTLP-DTV-ANLGRLHTLRAHSNQ-LLS--FPELAQ-------L 451 (1081)
T ss_pred cccc-cccCCHHHH-----hchHHhHHHhcccc-hhhhhh-HHH-HhhhhhHHHhhcCCc-eee--chhhhh-------c
Confidence 8885 332211222 25668899999884 555433 222 246788888887764 221 113443 7
Q ss_pred CCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585 324 KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR 362 (404)
Q Consensus 324 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 362 (404)
+.|+.+|++. ++++...+.... ..|+|++|+++||.
T Consensus 452 ~qL~~lDlS~-N~L~~~~l~~~~--p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 452 PQLKVLDLSC-NNLSEVTLPEAL--PSPNLKYLDLSGNT 487 (1081)
T ss_pred CcceEEeccc-chhhhhhhhhhC--CCcccceeeccCCc
Confidence 8899999987 677765554433 24899999999987
No 24
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.86 E-value=9.7e-09 Score=100.21 Aligned_cols=217 Identities=18% Similarity=0.211 Sum_probs=145.6
Q ss_pred cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCccc----ccccchhhhhhh---cCCCCCceEEecc
Q 015585 12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLA----RLDLTSSGLQSL---GSCHHLTGLSLTR 84 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~~~l---~~~~~L~~L~l~~ 84 (404)
.+...-+++..++.+..........+.+ ..|+++.+.+........ ..++.. .+..+ ..-.+|++|+++|
T Consensus 55 ~~~~~f~ltki~l~~~~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~-lL~~~Ln~~sr~nL~~LdI~G 131 (699)
T KOG3665|consen 55 RIIRKFNLTKIDLKNVTLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIIS-LLKDLLNEESRQNLQHLDISG 131 (699)
T ss_pred hhhhhheeEEeeccceecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHH-HHHHHHhHHHHHhhhhcCccc
Confidence 3455567888888877777666666554 338888887643221000 001100 11111 2457899999977
Q ss_pred cccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCcc
Q 015585 85 CRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALV 164 (404)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 164 (404)
. ..+...++..+...+|+|+.|.+.+ .......+.++..++|+|..||++++. ++.- .. ..++++|+
T Consensus 132 ~--------~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl--~G-IS~LknLq 198 (699)
T KOG3665|consen 132 S--------ELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL--SG-ISRLKNLQ 198 (699)
T ss_pred c--------chhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc--HH-HhccccHH
Confidence 3 2356666777778899999999998 455555688888889999999999985 3322 12 23778899
Q ss_pred EEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHH-HHh----hhCCCCCCEEEccCCccCHHHHHHHHhcCCCcC
Q 015585 165 EVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTC-LRS----ISCLRKLTALNLTGADITDSGLSILAQGNLPIM 239 (404)
Q Consensus 165 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~----l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~ 239 (404)
.|.+.+-...+...+..+..+++|+.||++.-....... +.. -..+|+|+.|+.+++.+....+..+...-|+|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 998888766666777788889999999998743333321 111 125789999999999888888888877667776
Q ss_pred EEeec
Q 015585 240 NLCLR 244 (404)
Q Consensus 240 ~L~l~ 244 (404)
.+.+-
T Consensus 279 ~i~~~ 283 (699)
T KOG3665|consen 279 QIAAL 283 (699)
T ss_pred hhhhh
Confidence 65543
No 25
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.81 E-value=1.2e-07 Score=78.95 Aligned_cols=196 Identities=18% Similarity=0.179 Sum_probs=97.2
Q ss_pred cCCCCcEEEcCCCCCCC---HHHHHHHHHhCCCCcEEEecCCCC--CCHHHHH----H-----HHcCCCCccEEEccCCC
Q 015585 107 GCKGLESVRLGGFSKVS---DAGFAAILLSCHSLKKFEVRSASF--LSDLAFH----D-----LTGVPCALVEVRLLWCR 172 (404)
Q Consensus 107 ~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~l~----~-----~~~~~~~L~~L~l~~~~ 172 (404)
.||+|+..++|++ .++ ...+..++..-..|++|.+++|.. +....+. . -.+.-|.|+.+....+.
T Consensus 90 kcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 4666666666653 221 123344455555666666666521 1111111 1 11234667777665543
Q ss_pred CCCH--HHHHHhh-CCCCCCEEeccCCCCCChHHHHhh-----hCCCCCCEEEccCCccCHHHHHHHHh---cCCCcCEE
Q 015585 173 LITS--ETVKKLA-SSRNLEVLDLGGCKSIADTCLRSI-----SCLRKLTALNLTGADITDSGLSILAQ---GNLPIMNL 241 (404)
Q Consensus 173 ~~~~--~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~l~~~~l~~l~~---~~~~L~~L 241 (404)
.-+. ......- ...+|+++.+.. +.+...++..+ ..+.+|+.|++..|.++..+-..++. .++.|+.|
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 2211 1111111 235777777766 46666554443 35677777777777666555544443 34557777
Q ss_pred eecCCCCCcHHHHHHHHhh-cCCCCCCccEEecCCCCC----CCHHHHHHH-HHhCCCCceEeecCCCCCC
Q 015585 242 CLRGCKRVTDKGISHLLCV-GGTISQSLTTLDLGYMPG----ISDDGILTI-AAAGIGIIDLCVRSCFYVT 306 (404)
Q Consensus 242 ~l~~~~~l~~~~~~~l~~~-~~~~~~~L~~L~l~~~~~----l~~~~~~~l-~~~~~~L~~L~l~~~~~~~ 306 (404)
.+.+|- +...+...+..+ .....|+|..|.+.+... +.+..+..+ -..+|-|..|.+.+|. +.
T Consensus 248 ~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr-~~ 316 (388)
T COG5238 248 RLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR-IK 316 (388)
T ss_pred cccchh-hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc-ch
Confidence 777775 444443332210 113457777777665311 111111111 1235667777777774 44
No 26
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.81 E-value=1.3e-07 Score=78.80 Aligned_cols=252 Identities=16% Similarity=0.110 Sum_probs=138.0
Q ss_pred cCCCCcEEEcCCCCCCCHHHHHHHH---HhCCCCcEEEecCC--CCCCHH------HHHHHHcCCCCccEEEccCCCCC-
Q 015585 107 GCKGLESVRLGGFSKVSDAGFAAIL---LSCHSLKKFEVRSA--SFLSDL------AFHDLTGVPCALVEVRLLWCRLI- 174 (404)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~--~~~~~~------~l~~~~~~~~~L~~L~l~~~~~~- 174 (404)
.+..+.++++|++ .++.....++. ..-.+|+..+++.. ....+. .+......||.|+.++++.+.+-
T Consensus 28 ~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 4678889999985 45544444443 33456666666543 111111 12223347888888888876432
Q ss_pred --CHHHHHHhhCCCCCCEEeccCCCCCChHHHH-------hh------hCCCCCCEEEccCCccCHHHHHH---HHhcCC
Q 015585 175 --TSETVKKLASSRNLEVLDLGGCKSIADTCLR-------SI------SCLRKLTALNLTGADITDSGLSI---LAQGNL 236 (404)
Q Consensus 175 --~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------~l------~~~~~L~~L~l~~~~l~~~~l~~---l~~~~~ 236 (404)
.......+++...|++|.+++| +++..+-. .+ +.-|.|+.+..+.|++.+..... ..+.-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 2222334557788888888875 44432211 11 24577888888888665433322 223335
Q ss_pred CcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH---HhCCCCceEeecCCCCCCHHHHHHH
Q 015585 237 PIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYVTDASVEAL 313 (404)
Q Consensus 237 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l 313 (404)
+|+.+.+..+. +.++++..+..-....+.+|+.|++... -.+..+-..+. ...+.|++|.+.+|- ++..+...+
T Consensus 186 ~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v 262 (388)
T COG5238 186 NLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSV 262 (388)
T ss_pred CceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccchh-hccccHHHH
Confidence 77888887765 6666554443111124567788887764 44444433332 234667888887773 554444333
Q ss_pred HhhCCCcccCCCCcEEeccCCCCCC-----HHHHHhhhcCCCCcccEEecCCccccC
Q 015585 314 ARKQPDQEKSKQLRRLDLCNCIGLS-----VDSLRWVKRPSFRGLHWLGIGQTRLAS 365 (404)
Q Consensus 314 ~~~~~~~~~~~~L~~L~l~~~~~i~-----~~~~~~l~~~~~~~L~~L~l~~~~l~~ 365 (404)
....... ..|+|..|...+. .+. ......+.....|-|..|.+.||++..
T Consensus 263 ~~~f~e~-~~p~l~~L~~~Yn-e~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 263 LRRFNEK-FVPNLMPLPGDYN-ERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred HHHhhhh-cCCCccccccchh-hhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 3211100 2567777766552 221 222333333457777777777777754
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.80 E-value=3.1e-10 Score=108.93 Aligned_cols=129 Identities=20% Similarity=0.188 Sum_probs=79.6
Q ss_pred CCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCE
Q 015585 161 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 240 (404)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~ 240 (404)
+.|+.|.+.++. +++..+..+-.+.+||.|+|++ +.+....-..+.+++.|+.|++++|.++.-. ..++ .++.|+.
T Consensus 359 ~~Lq~LylanN~-Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva-~~~~L~t 434 (1081)
T KOG0618|consen 359 AALQELYLANNH-LTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVA-NLGRLHT 434 (1081)
T ss_pred HHHHHHHHhcCc-ccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccchhhhhh-HHHH-hhhhhHH
Confidence 456666666643 6777777777788888888887 4444434445566778888888888665432 2222 4667777
Q ss_pred EeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCC
Q 015585 241 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 303 (404)
Q Consensus 241 L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 303 (404)
|...++.-. - +..+. .++.|+.+|++. ++++...+...... |+|++|++++|.
T Consensus 435 L~ahsN~l~-~--fPe~~-----~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 435 LRAHSNQLL-S--FPELA-----QLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred HhhcCCcee-e--chhhh-----hcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCc
Confidence 776655421 1 11333 567888888876 36665443332211 688888888876
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=1.4e-08 Score=85.65 Aligned_cols=143 Identities=19% Similarity=0.131 Sum_probs=95.3
Q ss_pred hCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHH
Q 015585 208 SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTI 287 (404)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 287 (404)
..+..|+++++++|.++...-. .+-.|.++.|+++++. +...+ .+. .+++|+.|++++. .++. +..+
T Consensus 281 dTWq~LtelDLS~N~I~~iDES--vKL~Pkir~L~lS~N~-i~~v~--nLa-----~L~~L~~LDLS~N-~Ls~--~~Gw 347 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDES--VKLAPKLRRLILSQNR-IRTVQ--NLA-----ELPQLQLLDLSGN-LLAE--CVGW 347 (490)
T ss_pred chHhhhhhccccccchhhhhhh--hhhccceeEEeccccc-eeeeh--hhh-----hcccceEeecccc-hhHh--hhhh
Confidence 3577899999999977632211 2246899999999887 43322 233 5679999999985 4433 3333
Q ss_pred HHhCCCCceEeecCCCCCCH-HHHHHHHhhCCCcccCCCCcEEeccCCCCCCH-HHHHhhhcCCCCcccEEecCCccccC
Q 015585 288 AAAGIGIIDLCVRSCFYVTD-ASVEALARKQPDQEKSKQLRRLDLCNCIGLSV-DSLRWVKRPSFRGLHWLGIGQTRLAS 365 (404)
Q Consensus 288 ~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~~L~~L~l~~~~l~~ 365 (404)
...+-+++.|.+.+|. +.+ .++. ++.+|..|++++ ++|.. ..+..++ .+|+|+.+.+.+|++..
T Consensus 348 h~KLGNIKtL~La~N~-iE~LSGL~----------KLYSLvnLDl~~-N~Ie~ldeV~~IG--~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNK-IETLSGLR----------KLYSLVNLDLSS-NQIEELDEVNHIG--NLPCLETLRLTGNPLAG 413 (490)
T ss_pred HhhhcCEeeeehhhhh-HhhhhhhH----------hhhhheeccccc-cchhhHHHhcccc--cccHHHHHhhcCCCccc
Confidence 3456899999999885 322 2222 255699999999 45543 4445554 49999999999999976
Q ss_pred CChHHHHHHHhc
Q 015585 366 KGNPVITEIHNE 377 (404)
Q Consensus 366 ~~~~~~~~~~~~ 377 (404)
..+..-.-++..
T Consensus 414 ~vdYRTKVLa~F 425 (490)
T KOG1259|consen 414 SVDYRTKVLARF 425 (490)
T ss_pred cchHHHHHHHHH
Confidence 655444444433
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.72 E-value=2.5e-08 Score=97.89 Aligned_cols=243 Identities=19% Similarity=0.168 Sum_probs=141.0
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 96 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 96 (404)
++|+.|++..|.++.. + ...++|++|++++|.. +. ++. ..++|+.|+++++. +
T Consensus 222 ~~L~~L~L~~N~Lt~L--P---~lp~~Lk~LdLs~N~L---------ts--LP~--lp~sL~~L~Ls~N~---------L 274 (788)
T PRK15387 222 AHITTLVIPDNNLTSL--P---ALPPELRTLEVSGNQL---------TS--LPV--LPPGLLELSIFSNP---------L 274 (788)
T ss_pred cCCCEEEccCCcCCCC--C---CCCCCCcEEEecCCcc---------Cc--ccC--cccccceeeccCCc---------h
Confidence 4799999998887742 1 2368999999999732 21 111 23688899987642 2
Q ss_pred ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585 97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 176 (404)
Q Consensus 97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 176 (404)
. .+. ....+|+.|+++++ .++.. ....++|+.|+++++. ++. +. .....|+.|.+.++. +.
T Consensus 275 ~--~Lp---~lp~~L~~L~Ls~N-~Lt~L-----P~~p~~L~~LdLS~N~-L~~--Lp---~lp~~L~~L~Ls~N~-L~- 335 (788)
T PRK15387 275 T--HLP---ALPSGLCKLWIFGN-QLTSL-----PVLPPGLQELSVSDNQ-LAS--LP---ALPSELCKLWAYNNQ-LT- 335 (788)
T ss_pred h--hhh---hchhhcCEEECcCC-ccccc-----cccccccceeECCCCc-ccc--CC---CCcccccccccccCc-cc-
Confidence 1 111 22357888888884 44421 1224789999998884 321 11 123467778777754 22
Q ss_pred HHHHHhhCC-CCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHH
Q 015585 177 ETVKKLASS-RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 255 (404)
Q Consensus 177 ~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~ 255 (404)
.++.+ .+|++|++++ +.+.. ++. ..++|+.|++.+|.++. +. ....+|+.|+++++. +..
T Consensus 336 ----~LP~lp~~Lq~LdLS~-N~Ls~--LP~--lp~~L~~L~Ls~N~L~~--LP---~l~~~L~~LdLs~N~-Lt~---- 396 (788)
T PRK15387 336 ----SLPTLPSGLQELSVSD-NQLAS--LPT--LPSELYKLWAYNNRLTS--LP---ALPSGLKELIVSGNR-LTS---- 396 (788)
T ss_pred ----cccccccccceEecCC-CccCC--CCC--CCcccceehhhcccccc--Cc---ccccccceEEecCCc-ccC----
Confidence 12222 4788888887 35543 111 13567778888776653 22 223568888887775 432
Q ss_pred HHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585 256 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 335 (404)
Q Consensus 256 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 335 (404)
+. ...++|+.|+++++ .++.. .. ...+|+.|++++|. ++.. -..+. .+++|+.|++++ +
T Consensus 397 -LP----~l~s~L~~LdLS~N-~LssI--P~---l~~~L~~L~Ls~Nq-Lt~L-P~sl~-------~L~~L~~LdLs~-N 455 (788)
T PRK15387 397 -LP----VLPSELKELMVSGN-RLTSL--PM---LPSGLLSLSVYRNQ-LTRL-PESLI-------HLSSETTVNLEG-N 455 (788)
T ss_pred -CC----CcccCCCEEEccCC-cCCCC--Cc---chhhhhhhhhccCc-cccc-ChHHh-------hccCCCeEECCC-C
Confidence 11 12357888888875 44421 11 12457777787774 4421 11222 367788888887 4
Q ss_pred CCCHHHHHhh
Q 015585 336 GLSVDSLRWV 345 (404)
Q Consensus 336 ~i~~~~~~~l 345 (404)
.++......+
T Consensus 456 ~Ls~~~~~~L 465 (788)
T PRK15387 456 PLSERTLQAL 465 (788)
T ss_pred CCCchHHHHH
Confidence 5665444433
No 30
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.8e-08 Score=84.98 Aligned_cols=232 Identities=18% Similarity=0.099 Sum_probs=147.6
Q ss_pred CcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhh-CCCCCC
Q 015585 111 LESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLE 189 (404)
Q Consensus 111 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~ 189 (404)
++-+.+.+|.-.+...+..+...+..++.+++.++..-.+..+.++..++|.|+.|+++.+. +.. .+..++ ...+|+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s-~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSS-DIKSLPLPLKNLR 124 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCC-ccccCcccccceE
Confidence 44556666543344456667778899999999999756678888999999999999998765 322 344453 678999
Q ss_pred EEeccCCCCCChHHHHhh-hCCCCCCEEEccCCcc-----CHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCC
Q 015585 190 VLDLGGCKSIADTCLRSI-SCLRKLTALNLTGADI-----TDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGT 263 (404)
Q Consensus 190 ~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l-----~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 263 (404)
+|.+.+ ..++......+ ..+|.++.|+++.|.+ .+..... .-+.+..|....|...-....-.+. +
T Consensus 125 ~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~----r 196 (418)
T KOG2982|consen 125 VLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLS----R 196 (418)
T ss_pred EEEEcC-CCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHH----h
Confidence 999988 46766655543 4688889998888732 2222222 2344556666555422222222333 5
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCC---HH
Q 015585 264 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLS---VD 340 (404)
Q Consensus 264 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~---~~ 340 (404)
.+|++..+-+..|+--+.... .=.+.+|.+.-|.++.+..-+.+++.++.. +++|..|.+.+.+-.. ..
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~e-k~se~~p~~~~LnL~~~~idswasvD~Ln~-------f~~l~dlRv~~~Pl~d~l~~~ 268 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSE-KGSEPFPSLSCLNLGANNIDSWASVDALNG-------FPQLVDLRVSENPLSDPLRGG 268 (418)
T ss_pred hcccchheeeecCcccchhhc-ccCCCCCcchhhhhcccccccHHHHHHHcC-------CchhheeeccCCcccccccCC
Confidence 678888888877642222221 112345677777887775344567777774 8999999998855432 22
Q ss_pred HHHhhhcCCCCcccEEecCC
Q 015585 341 SLRWVKRPSFRGLHWLGIGQ 360 (404)
Q Consensus 341 ~~~~l~~~~~~~L~~L~l~~ 360 (404)
..+.+-...+++++.|+=+.
T Consensus 269 err~llIaRL~~v~vLNGsk 288 (418)
T KOG2982|consen 269 ERRFLLIARLTKVQVLNGSK 288 (418)
T ss_pred cceEEEEeeccceEEecCcc
Confidence 22233345688888888663
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.61 E-value=1.8e-09 Score=94.29 Aligned_cols=91 Identities=15% Similarity=0.121 Sum_probs=61.5
Q ss_pred HHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCC
Q 015585 288 AAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKG 367 (404)
Q Consensus 288 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~ 367 (404)
.+.+++|+.|++++|. ++...-.++. +...++.|.+.. +++....-..+. .+..|+.|++.+|+++...
T Consensus 270 f~~L~~L~~lnlsnN~-i~~i~~~aFe-------~~a~l~eL~L~~-N~l~~v~~~~f~--~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNK-ITRIEDGAFE-------GAAELQELYLTR-NKLEFVSSGMFQ--GLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred HhhcccceEeccCCCc-cchhhhhhhc-------chhhhhhhhcCc-chHHHHHHHhhh--ccccceeeeecCCeeEEEe
Confidence 4567899999998884 6655444444 356688888887 466554444443 4778999999999987553
Q ss_pred hHHHHHHHhcCCccE-EEecccccccc
Q 015585 368 NPVITEIHNERPWLT-FCLDGCEIGCH 393 (404)
Q Consensus 368 ~~~~~~~~~~~~~l~-l~~~~~~~~~~ 393 (404)
..+++. .-++. +.+-+|+|.|+
T Consensus 339 ~~aF~~----~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 339 PGAFQT----LFSLSTLNLLSNPFNCN 361 (498)
T ss_pred cccccc----cceeeeeehccCcccCc
Confidence 333333 34444 88888888888
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=1.3e-07 Score=79.84 Aligned_cols=206 Identities=16% Similarity=0.104 Sum_probs=135.1
Q ss_pred CCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCC-HHHHHHHHHhCCCCcEEEecCCCCCCHHHHH
Q 015585 76 HLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVS-DAGFAAILLSCHSLKKFEVRSASFLSDLAFH 154 (404)
Q Consensus 76 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~ 154 (404)
.++.|.+.+|.. -+......+...+..++++++.++ .++ ...+..+++++|.|+.|+++.+..-+ .+.
T Consensus 46 a~ellvln~~~i--------d~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s--~I~ 114 (418)
T KOG2982|consen 46 ALELLVLNGSII--------DNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSS--DIK 114 (418)
T ss_pred chhhheecCCCC--------CcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCC--ccc
Confidence 445566655531 123345556677889999999995 554 45688899999999999999986322 222
Q ss_pred HHHcCCCCccEEEccCCCCCCHHHHHH-hhCCCCCCEEeccCCCCC-----ChHHHHhhhCCCCCCEEEccCCcc-CHHH
Q 015585 155 DLTGVPCALVEVRLLWCRLITSETVKK-LASSRNLEVLDLGGCKSI-----ADTCLRSISCLRKLTALNLTGADI-TDSG 227 (404)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~-----~~~~~~~l~~~~~L~~L~l~~~~l-~~~~ 227 (404)
.+.....+|+.|-+.|.. ++...... +..+|.+++|.++. ++. .+..... -.+.+++|++..|.. ....
T Consensus 115 ~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~-N~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~ 190 (418)
T KOG2982|consen 115 SLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELHMSD-NSLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLN 190 (418)
T ss_pred cCcccccceEEEEEcCCC-CChhhhhhhhhcchhhhhhhhcc-chhhhhccccccccc--cchhhhhhhcCCcHHHHHHH
Confidence 222355789999998854 55444433 34678888888876 222 1211111 123566666666633 2334
Q ss_pred HHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCH-HHHHHHHHhCCCCceEeecCCC
Q 015585 228 LSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD-DGILTIAAAGIGIIDLCVRSCF 303 (404)
Q Consensus 228 l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~ 303 (404)
...+.+.+|++..+-+..|+ +....-+.-+ ..+|.+-.|.++.. ++.+ +.+..+ +.++.|..|.+.+++
T Consensus 191 ~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~s----e~~p~~~~LnL~~~-~idswasvD~L-n~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 191 KNKLSRIFPNVNSVFVCEGP-LKTESSEKGS----EPFPSLSCLNLGAN-NIDSWASVDAL-NGFPQLVDLRVSENP 260 (418)
T ss_pred HHhHHhhcccchheeeecCc-ccchhhcccC----CCCCcchhhhhccc-ccccHHHHHHH-cCCchhheeeccCCc
Confidence 55667788999999998887 5554433333 56788888888874 6766 445555 468999999999998
No 33
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=2.7e-07 Score=73.69 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=50.8
Q ss_pred ccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhc
Q 015585 268 LTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR 347 (404)
Q Consensus 268 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 347 (404)
++.++-+++ .|...|+..+. .++.++.|.+.+|.++.|.++..++. ..++|++|+|++|+.||+.++..+.
T Consensus 103 IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~------~~~~L~~L~lsgC~rIT~~GL~~L~- 173 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGG------LAPSLQDLDLSGCPRITDGGLACLL- 173 (221)
T ss_pred EEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcc------cccchheeeccCCCeechhHHHHHH-
Confidence 344444443 44444444442 34555555555555555555555554 3455555555555555555555554
Q ss_pred CCCCcccEEecCCccccCCChHHHHHHHhcCCccE
Q 015585 348 PSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT 382 (404)
Q Consensus 348 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~ 382 (404)
.+++|+.|.+.+-+-..........+.+.+|+..
T Consensus 174 -~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~ 207 (221)
T KOG3864|consen 174 -KLKNLRRLHLYDLPYVANLELVQRQLEEALPKCD 207 (221)
T ss_pred -HhhhhHHHHhcCchhhhchHHHHHHHHHhCcccc
Confidence 2555555555543332222222333344555544
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.31 E-value=2e-07 Score=74.87 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=3.6
Q ss_pred CCCCCEEEccCCcc
Q 015585 210 LRKLTALNLTGADI 223 (404)
Q Consensus 210 ~~~L~~L~l~~~~l 223 (404)
+|+|+.|.+++|.+
T Consensus 87 lp~L~~L~L~~N~I 100 (175)
T PF14580_consen 87 LPNLQELYLSNNKI 100 (175)
T ss_dssp -TT--EEE-TTS--
T ss_pred CCcCCEEECcCCcC
Confidence 34444444444433
No 35
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.29 E-value=1.6e-08 Score=88.73 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=22.7
Q ss_pred CCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585 323 SKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 364 (404)
Q Consensus 323 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~ 364 (404)
+.+|.+|++.++ .+.... ..++ .+++|++|.++||++.
T Consensus 504 m~nL~tLDL~nN-dlq~IP-p~Lg--nmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNN-DLQQIP-PILG--NMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCC-chhhCC-hhhc--cccceeEEEecCCccC
Confidence 566888888773 332211 1122 3778888888888764
No 36
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=7.7e-07 Score=71.11 Aligned_cols=83 Identities=27% Similarity=0.347 Sum_probs=37.4
Q ss_pred CCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCC
Q 015585 213 LTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGI 292 (404)
Q Consensus 213 L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 292 (404)
++.++-+++.+...++..+- .++.++.|.+.+|..+.+.+++.+. ...++|+.|++++|+.|++.++..+. .++
T Consensus 103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~~L~-~lk 176 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLACLL-KLK 176 (221)
T ss_pred EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhHHHHHH-Hhh
Confidence 34444444444444444433 2444444445444444444444444 33444444444444444444444443 234
Q ss_pred CCceEeecC
Q 015585 293 GIIDLCVRS 301 (404)
Q Consensus 293 ~L~~L~l~~ 301 (404)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 444444443
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.24 E-value=1.3e-07 Score=75.87 Aligned_cols=37 Identities=19% Similarity=0.013 Sum_probs=11.9
Q ss_pred CCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecC
Q 015585 323 SKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIG 359 (404)
Q Consensus 323 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~ 359 (404)
+|+|+.|++.+++-......+.+....+|+|+.||-.
T Consensus 112 l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 112 LPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 4555555555433222222222222235555555544
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.23 E-value=1.2e-07 Score=83.12 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=24.0
Q ss_pred ccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecC
Q 015585 11 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLED 51 (404)
Q Consensus 11 ~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~ 51 (404)
.+|+.+++||+|||+.|.|+...+..+.. +++|.+|-+.+
T Consensus 85 ~aF~~l~~LRrLdLS~N~Is~I~p~AF~G-L~~l~~Lvlyg 124 (498)
T KOG4237|consen 85 GAFKTLHRLRRLDLSKNNISFIAPDAFKG-LASLLSLVLYG 124 (498)
T ss_pred hhccchhhhceecccccchhhcChHhhhh-hHhhhHHHhhc
Confidence 34666667777777766666555555543 55555555544
No 39
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.21 E-value=4.6e-07 Score=79.77 Aligned_cols=110 Identities=18% Similarity=0.072 Sum_probs=57.9
Q ss_pred hhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHH
Q 015585 206 SISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGIL 285 (404)
Q Consensus 206 ~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 285 (404)
.+..+++|..|++++|-+.+-... +. .+..|+.|+++.+..-.-..+-+ ....++.+-.+. +.+......
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~LP~e-~~-~lv~Lq~LnlS~NrFr~lP~~~y-------~lq~lEtllas~-nqi~~vd~~ 499 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLNDLPEE-MG-SLVRLQTLNLSFNRFRMLPECLY-------ELQTLETLLASN-NQIGSVDPS 499 (565)
T ss_pred HHHhhhcceeeecccchhhhcchh-hh-hhhhhheecccccccccchHHHh-------hHHHHHHHHhcc-ccccccChH
Confidence 345677888888887644321111 11 23457888887664211111111 111233333332 233221111
Q ss_pred HHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585 286 TIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 335 (404)
Q Consensus 286 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 335 (404)
.+ ..+.+|..|++.+|. ++.++..+. +|.+|++|++.+++
T Consensus 500 ~l-~nm~nL~tLDL~nNd------lq~IPp~Lg---nmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 500 GL-KNMRNLTTLDLQNND------LQQIPPILG---NMTNLRHLELDGNP 539 (565)
T ss_pred Hh-hhhhhcceeccCCCc------hhhCChhhc---cccceeEEEecCCc
Confidence 11 235789999998885 444444444 79999999999954
No 40
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.20 E-value=9.1e-06 Score=80.58 Aligned_cols=252 Identities=13% Similarity=0.117 Sum_probs=113.5
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 96 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 96 (404)
.+.+.|++++..++. .+..+ .++|+.|++++|... .++. . ..++|+.|+++++. +..+
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I---p~~L~~L~Ls~N~Lt------sLP~----~--l~~nL~~L~Ls~N~------LtsL 235 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI---PEQITTLILDNNELK------SLPE----N--LQGNIKTLYANSNQ------LTSI 235 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc---ccCCcEEEecCCCCC------cCCh----h--hccCCCEEECCCCc------cccC
Confidence 345667776555442 12222 246777777775321 1111 1 12467777776642 2222
Q ss_pred ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585 97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 176 (404)
Q Consensus 97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 176 (404)
... + .++|+.|+++++ .+... ..-+ ..+|+.|+++++. ++. ++. ...++|+.|++++|. +..
T Consensus 236 P~~----l---~~~L~~L~Ls~N-~L~~L--P~~l--~s~L~~L~Ls~N~-L~~--LP~--~l~~sL~~L~Ls~N~-Lt~ 297 (754)
T PRK15370 236 PAT----L---PDTIQEMELSIN-RITEL--PERL--PSALQSLDLFHNK-ISC--LPE--NLPEELRYLSVYDNS-IRT 297 (754)
T ss_pred Chh----h---hccccEEECcCC-ccCcC--ChhH--hCCCCEEECcCCc-cCc--ccc--ccCCCCcEEECCCCc-ccc
Confidence 211 1 135777777764 33211 1101 1467777777653 221 111 112467777777653 221
Q ss_pred HHHHHhh--CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHH
Q 015585 177 ETVKKLA--SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGI 254 (404)
Q Consensus 177 ~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~ 254 (404)
+. -.++|+.|+++++ .+... .. ...++|+.|++++|.++.- .. ..+++|+.|++++|. +...
T Consensus 298 -----LP~~lp~sL~~L~Ls~N-~Lt~L--P~-~l~~sL~~L~Ls~N~Lt~L--P~--~l~~sL~~L~Ls~N~-L~~L-- 361 (754)
T PRK15370 298 -----LPAHLPSGITHLNVQSN-SLTAL--PE-TLPPGLKTLEAGENALTSL--PA--SLPPELQVLDVSKNQ-ITVL-- 361 (754)
T ss_pred -----CcccchhhHHHHHhcCC-ccccC--Cc-cccccceeccccCCccccC--Ch--hhcCcccEEECCCCC-CCcC--
Confidence 11 0134566666653 33311 10 1124666666666654421 10 012566777776664 3311
Q ss_pred HHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCH--HHHHHHHhhCCCcccCCCCcEEecc
Q 015585 255 SHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTD--ASVEALARKQPDQEKSKQLRRLDLC 332 (404)
Q Consensus 255 ~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~~~~~~~L~~L~l~ 332 (404)
... ..+.|++|+++++ .++.... .+. +.|+.|++++|. ++. ..+..+.. .++++..|++.
T Consensus 362 P~~------lp~~L~~LdLs~N-~Lt~LP~-~l~---~sL~~LdLs~N~-L~~LP~sl~~~~~------~~~~l~~L~L~ 423 (754)
T PRK15370 362 PET------LPPTITTLDVSRN-ALTNLPE-NLP---AALQIMQASRNN-LVRLPESLPHFRG------EGPQPTRIIVE 423 (754)
T ss_pred Chh------hcCCcCEEECCCC-cCCCCCH-hHH---HHHHHHhhccCC-cccCchhHHHHhh------cCCCccEEEee
Confidence 000 1246677777665 3332110 111 246666666663 331 11222222 34666667666
Q ss_pred CCCCCCHHHHH
Q 015585 333 NCIGLSVDSLR 343 (404)
Q Consensus 333 ~~~~i~~~~~~ 343 (404)
+ +.++...+.
T Consensus 424 ~-Npls~~tl~ 433 (754)
T PRK15370 424 Y-NPFSERTIQ 433 (754)
T ss_pred C-CCccHHHHH
Confidence 6 345543333
No 41
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.20 E-value=2.3e-06 Score=84.67 Aligned_cols=122 Identities=17% Similarity=0.095 Sum_probs=55.0
Q ss_pred CCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhC
Q 015585 212 KLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG 291 (404)
Q Consensus 212 ~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 291 (404)
+|+.|++++|.++.. .. ...++|+.|.+++|. ++.. .. ..+++|+.|+++++ .++... ..+ .
T Consensus 305 sL~~L~Ls~N~Lt~L--P~--~l~~sL~~L~Ls~N~-Lt~L--P~------~l~~sL~~L~Ls~N-~L~~LP-~~l---p 366 (754)
T PRK15370 305 GITHLNVQSNSLTAL--PE--TLPPGLKTLEAGENA-LTSL--PA------SLPPELQVLDVSKN-QITVLP-ETL---P 366 (754)
T ss_pred hHHHHHhcCCccccC--Cc--cccccceeccccCCc-cccC--Ch------hhcCcccEEECCCC-CCCcCC-hhh---c
Confidence 455555555544321 00 012456666666654 3221 10 11246677777664 343211 011 2
Q ss_pred CCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCH--HHHHhhhcCCCCcccEEecCCcccc
Q 015585 292 IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV--DSLRWVKRPSFRGLHWLGIGQTRLA 364 (404)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~--~~~~~l~~~~~~~L~~L~l~~~~l~ 364 (404)
++|+.|++++|. ++... ..+. +.|+.|++++| .++. ..+..+. ..+|.+..|++.+|++.
T Consensus 367 ~~L~~LdLs~N~-Lt~LP-~~l~---------~sL~~LdLs~N-~L~~LP~sl~~~~-~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 PTITTLDVSRNA-LTNLP-ENLP---------AALQIMQASRN-NLVRLPESLPHFR-GEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcCEEECCCCc-CCCCC-HhHH---------HHHHHHhhccC-CcccCchhHHHHh-hcCCCccEEEeeCCCcc
Confidence 566777776664 33110 0111 23666666663 3332 1111221 12466777777777764
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.19 E-value=2.5e-07 Score=78.30 Aligned_cols=235 Identities=15% Similarity=0.129 Sum_probs=133.9
Q ss_pred HHHHHHHhCCCCcEEEecCCCCCC------HHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhh-CCCCCCEEeccCCCC
Q 015585 126 GFAAILLSCHSLKKFEVRSASFLS------DLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKS 198 (404)
Q Consensus 126 ~~~~l~~~~~~L~~L~l~~~~~~~------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~ 198 (404)
.+..++..|.+|+.|.+++....- ..-+..-...+.+|+.+.++.|+. +.+..+. .-|.|+.+.+.+. .
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~---~~i~~~~~~kptl~t~~v~~s-~ 248 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST---ENIVDIELLKPTLQTICVHNT-T 248 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch---hheeceeecCchhheeeeecc-c
Confidence 466677778888888888774321 111222223456788888877652 1222222 2367777776552 2
Q ss_pred CChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCC
Q 015585 199 IADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPG 278 (404)
Q Consensus 199 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~ 278 (404)
+.+ .+.+-+...+.......-..........+..+..|+.++++++. ++. +..-. +..|.++.|++++. .
T Consensus 249 ~~~--~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~-I~~--iDESv----KL~Pkir~L~lS~N-~ 318 (490)
T KOG1259|consen 249 IQD--VPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNL-ITQ--IDESV----KLAPKLRRLILSQN-R 318 (490)
T ss_pred ccc--cccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccc-hhh--hhhhh----hhccceeEEecccc-c
Confidence 211 11111112221111111111111111112245778999999875 433 22223 45689999999995 5
Q ss_pred CCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEec
Q 015585 279 ISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGI 358 (404)
Q Consensus 279 l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l 358 (404)
+...+ .+ +.+++|..|++++|. ++.. ...-. ++-+.++|.+++ +.+.+ +.-+. .+-+|..|++
T Consensus 319 i~~v~--nL-a~L~~L~~LDLS~N~-Ls~~--~Gwh~------KLGNIKtL~La~-N~iE~--LSGL~--KLYSLvnLDl 381 (490)
T KOG1259|consen 319 IRTVQ--NL-AELPQLQLLDLSGNL-LAEC--VGWHL------KLGNIKTLKLAQ-NKIET--LSGLR--KLYSLVNLDL 381 (490)
T ss_pred eeeeh--hh-hhcccceEeecccch-hHhh--hhhHh------hhcCEeeeehhh-hhHhh--hhhhH--hhhhheeccc
Confidence 54422 12 346899999999985 4432 22222 366899999988 44443 22222 2568999999
Q ss_pred CCccccCCChHHHHHHHhcCCccE-EEeccccccccC
Q 015585 359 GQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD 394 (404)
Q Consensus 359 ~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~ 394 (404)
++|++. ..+.+..+ ...|=++ +.+.+|++.-..
T Consensus 382 ~~N~Ie--~ldeV~~I-G~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 382 SSNQIE--ELDEVNHI-GNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cccchh--hHHHhccc-ccccHHHHHhhcCCCccccc
Confidence 999985 45566666 6788888 899999887553
No 43
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=98.12 E-value=1.7e-06 Score=81.22 Aligned_cols=347 Identities=22% Similarity=0.281 Sum_probs=181.4
Q ss_pred CcEEeccCCCCChHHHHHHHhh---CCCccEEeecCCCCCCcccccccchhhhhhhc----CC-CCCceEEecccccCCC
Q 015585 19 LRSLSLVLDVITDELLITITAS---LPFLVELDLEDRPNTEPLARLDLTSSGLQSLG----SC-HHLTGLSLTRCRHNHQ 90 (404)
Q Consensus 19 L~~L~L~~~~~~~~~~~~i~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~ 90 (404)
+..|.|.++.+.+.....+.+. .+.|+.|++++| .+.+.+...+. .. +.|+.|++..|..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n---------~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l--- 156 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN---------NLGDEGARLLCEGLRLPQCLLQTLELVSCSL--- 156 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC---------CCccHhHHHHHhhcccchHHHHHHHhhcccc---
Confidence 5666676666666555555443 457777777775 34555555542 22 4566666665531
Q ss_pred CCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHH---HH----hCCCCcEEEecCCCCCCHHHHH---HHHcCC
Q 015585 91 GTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAI---LL----SCHSLKKFEVRSASFLSDLAFH---DLTGVP 160 (404)
Q Consensus 91 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l---~~----~~~~L~~L~l~~~~~~~~~~l~---~~~~~~ 160 (404)
.......+.........++.++++.+... ..+...+ .+ ...++++|++.++. ++..... ......
T Consensus 157 ---~~~g~~~l~~~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~ 231 (478)
T KOG4308|consen 157 ---TSEGAAPLAAVLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASG 231 (478)
T ss_pred ---cccchHHHHHHHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhcc
Confidence 11222223333333566777777764332 2222222 22 23466777777774 3333322 223333
Q ss_pred CC-ccEEEccCCCCCCHHHHHHhh----CC-CCCCEEeccCCCCCChHHHHhh----hCCCCCCEEEccCCccCHHHHHH
Q 015585 161 CA-LVEVRLLWCRLITSETVKKLA----SS-RNLEVLDLGGCKSIADTCLRSI----SCLRKLTALNLTGADITDSGLSI 230 (404)
Q Consensus 161 ~~-L~~L~l~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~l~~ 230 (404)
+. +.++++..+. +.+.++..+. .. +.++++++..| .+++.....+ ..++.++.+.+..+.+.+.+...
T Consensus 232 ~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~ 309 (478)
T KOG4308|consen 232 ESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVEL 309 (478)
T ss_pred chhhHHHHHHhcC-cchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHH
Confidence 44 5556666543 5655555544 23 45677777774 5555444433 35667777777777776655444
Q ss_pred HHh---cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCc-cEEecCCCCCCCHHHHHHHHH----hCCCCceEeecCC
Q 015585 231 LAQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSL-TTLDLGYMPGISDDGILTIAA----AGIGIIDLCVRSC 302 (404)
Q Consensus 231 l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L-~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~ 302 (404)
+.+ ....+.++.+.++......+...+... .....+ ....++. ....+.+...+.. .-+.+..+++..+
T Consensus 310 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (478)
T KOG4308|consen 310 LLEALERKTPLLHLVLGGTGKGTRGGTSVLAEA--DAQRQLLSELGISG-NRVGEEGLALLVLAKSNPKSELLRLSLNSQ 386 (478)
T ss_pred HHHHhhhcccchhhhccccCccchhHHHHHHHH--HHHhhhhHHHHhhh-ccchHHHHHHHhhhhcccCcccchhhhhcc
Confidence 433 234455555554443332222211100 001111 2222222 2333333322221 1234556666665
Q ss_pred CCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhh---cCCCCcccEEecCCccccCCChHHHHHHHhcCC
Q 015585 303 FYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK---RPSFRGLHWLGIGQTRLASKGNPVITEIHNERP 379 (404)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 379 (404)
. +.+.+...++.... .++.++.++++.+ ...+++...+. .... .++.+.++.+..+....+....-....+
T Consensus 387 ~-~~~~~~~~l~~~~~---~~~~l~~~~l~~n-~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 460 (478)
T KOG4308|consen 387 V-IEGRGALRLAAQLA---SNEKLEILDLSLN-SLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALGTEELQRALALNP 460 (478)
T ss_pred c-cccHHHHHhhhhhh---hcchhhhhhhhcC-ccchhhHHHHHHhhhhcc-cchhhhhccChhhhcchHHHHHHHhcCC
Confidence 4 44444444444333 5889999999874 33333333322 1224 8999999999998877777776666777
Q ss_pred ccE-EEecccccccc
Q 015585 380 WLT-FCLDGCEIGCH 393 (404)
Q Consensus 380 ~l~-l~~~~~~~~~~ 393 (404)
.+. +..++|.+++.
T Consensus 461 ~~~~~~~~~~~~~~~ 475 (478)
T KOG4308|consen 461 GILAIRLRGNVIGRA 475 (478)
T ss_pred CcceeecccCccccc
Confidence 777 77777766654
No 44
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=98.02 E-value=1e-06 Score=82.63 Aligned_cols=222 Identities=24% Similarity=0.277 Sum_probs=122.6
Q ss_pred ccEEEccCCCCCCHHHHHHhh----CCCCCCEEeccCCCCCChHHHHhhh----CC-CCCCEEEccCCccCHHHHHHHHh
Q 015585 163 LVEVRLLWCRLITSETVKKLA----SSRNLEVLDLGGCKSIADTCLRSIS----CL-RKLTALNLTGADITDSGLSILAQ 233 (404)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~l~~~~l~~l~~ 233 (404)
+..+.+.+|. +.+.+...++ ..++|+.|++++ +++++.+...+. .. ..+++|.+..|.+++.+...++.
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSG-NNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhccc-CCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 4444555443 3333333333 456666666666 355555554442 11 34555666666666655554443
Q ss_pred ---cCCCcCEEeecCCCCCcHHHHHHHHhhcCC---CCCCccEEecCCCCCCCHHHHHHHHH---hCCC-CceEeecCCC
Q 015585 234 ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGT---ISQSLTTLDLGYMPGISDDGILTIAA---AGIG-IIDLCVRSCF 303 (404)
Q Consensus 234 ---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~-L~~L~l~~~~ 303 (404)
....++.+++..|. +...+...+..+... ...++++|++.+| .++......+.. +.+. +.+|++..|
T Consensus 167 ~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n- 243 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASN- 243 (478)
T ss_pred HHhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhc-
Confidence 24556666666665 333333333211111 3456788888877 555554444332 2344 556777766
Q ss_pred CCCHHHHHHHHhhCCCcccC-CCCcEEeccCCCCCCHHHHHhhh--cCCCCcccEEecCCccccCC-ChHHHHHHHhcCC
Q 015585 304 YVTDASVEALARKQPDQEKS-KQLRRLDLCNCIGLSVDSLRWVK--RPSFRGLHWLGIGQTRLASK-GNPVITEIHNERP 379 (404)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~l~--~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~~~~ 379 (404)
.+.|.+++.+...+. .. +.++.+++..| .+++.+...+. ...++.++.+.+++|.+..- ....++.+.+..|
T Consensus 244 ~l~d~g~~~L~~~l~---~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~ 319 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLS---VLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTP 319 (478)
T ss_pred CcchHHHHHHHHHhc---ccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhccc
Confidence 477777777777655 44 56788888884 66666665554 23477888888888887432 2223334455556
Q ss_pred ccEEEecccccccc
Q 015585 380 WLTFCLDGCEIGCH 393 (404)
Q Consensus 380 ~l~l~~~~~~~~~~ 393 (404)
.+.+-+.++..++.
T Consensus 320 ~~~~~l~~~~~~~~ 333 (478)
T KOG4308|consen 320 LLHLVLGGTGKGTR 333 (478)
T ss_pred chhhhccccCccch
Confidence 55555555555444
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.95 E-value=1.7e-06 Score=87.01 Aligned_cols=233 Identities=21% Similarity=0.216 Sum_probs=118.2
Q ss_pred cCCCCCcEEeccCCC--CChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585 14 YSSFNLRSLSLVLDV--ITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG 91 (404)
Q Consensus 14 ~~~~~L~~L~L~~~~--~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 91 (404)
..+++|+.|-+..+. +. .....+...+|.|+.||+++|.. + ......++.+-+||+|++++..
T Consensus 542 ~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~--------l-~~LP~~I~~Li~LryL~L~~t~----- 606 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSS--------L-SKLPSSIGELVHLRYLDLSDTG----- 606 (889)
T ss_pred CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCc--------c-CcCChHHhhhhhhhcccccCCC-----
Confidence 445678888887654 22 22223334588999999998632 2 1223457788888898887742
Q ss_pred CccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCC
Q 015585 92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC 171 (404)
Q Consensus 92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 171 (404)
+. .++.-...+..|.+|++........ +..+...+++|++|.+.....-.+.....-...+.+|+.+.+...
T Consensus 607 ----I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 607 ----IS--HLPSGLGNLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ----cc--ccchHHHHHHhhheecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 32 1222224456788888876432221 234455578888888877641122222222245566666655432
Q ss_pred CCCCHHHHHHhhCCCCCC----EEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHH----Hh-cCCCcCEEe
Q 015585 172 RLITSETVKKLASSRNLE----VLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSIL----AQ-GNLPIMNLC 242 (404)
Q Consensus 172 ~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l----~~-~~~~L~~L~ 242 (404)
. ...+..+-....|. .+.+.+| ........+..+.+|+.|.+..+...+...... .. .++++..+.
T Consensus 679 s---~~~~e~l~~~~~L~~~~~~l~~~~~--~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 679 S---VLLLEDLLGMTRLRSLLQSLSIEGC--SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred h---hHhHhhhhhhHHHHHHhHhhhhccc--ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 2 11222222222222 2222221 111223344567788888888776643222100 00 133444444
Q ss_pred ecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCH
Q 015585 243 LRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD 281 (404)
Q Consensus 243 l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~ 281 (404)
+.+|....+.....+ .|+|+.|.+..|..+.+
T Consensus 754 ~~~~~~~r~l~~~~f-------~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 754 ILNCHMLRDLTWLLF-------APHLTSLSLVSCRLLED 785 (889)
T ss_pred hhccccccccchhhc-------cCcccEEEEeccccccc
Confidence 445543333222222 36788888877755544
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.87 E-value=8.7e-07 Score=83.75 Aligned_cols=239 Identities=21% Similarity=0.178 Sum_probs=128.4
Q ss_pred HHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHH
Q 015585 126 GFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLR 205 (404)
Q Consensus 126 ~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 205 (404)
.++.+...+++++.|.+-..+.-....-..+ ..+..|+.|.+.+|+--.-.++..+. ..|+.|.-.. ..+..-.
T Consensus 75 qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~i-fpF~sLr~LElrg~~L~~~~GL~~lr--~qLe~LIC~~---Sl~Al~~ 148 (1096)
T KOG1859|consen 75 QLQRILDFLQKTKVLKLLPSPARDPTEPISI-FPFRSLRVLELRGCDLSTAKGLQELR--HQLEKLICHN---SLDALRH 148 (1096)
T ss_pred HHHHHHHHHhhheeeeecccCCCCCCCCcee-ccccceeeEEecCcchhhhhhhHHHH--Hhhhhhhhhc---cHHHHHH
Confidence 3455566677777777766532221111112 25678999999998744434444443 2334432211 1111111
Q ss_pred hh-------h---CCCCCCEEEccCCccC--HHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEec
Q 015585 206 SI-------S---CLRKLTALNLTGADIT--DSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDL 273 (404)
Q Consensus 206 ~l-------~---~~~~L~~L~l~~~~l~--~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l 273 (404)
.+ . .+-.|...+.+.|++. |..+. .++.+++|+++++. +++.. .+ ..++.|++||+
T Consensus 149 v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLq----ll~ale~LnLshNk-~~~v~--~L-----r~l~~LkhLDl 216 (1096)
T KOG1859|consen 149 VFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQ----LLPALESLNLSHNK-FTKVD--NL-----RRLPKLKHLDL 216 (1096)
T ss_pred HHHHhccccccchhhhhHhhhhcchhhHHhHHHHHH----HHHHhhhhccchhh-hhhhH--HH-----Hhccccccccc
Confidence 11 1 2334555555556543 22333 35778889998887 54433 22 36788999999
Q ss_pred CCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCH-HHHHhhhcCCCCc
Q 015585 274 GYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV-DSLRWVKRPSFRG 352 (404)
Q Consensus 274 ~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~~ 352 (404)
++. .+....-... ..|. |..|.+++|. ++. +..+. ++.+|+.||+++ +-+.. ..+..+. .+..
T Consensus 217 syN-~L~~vp~l~~-~gc~-L~~L~lrnN~-l~t--L~gie-------~LksL~~LDlsy-Nll~~hseL~pLw--sLs~ 280 (1096)
T KOG1859|consen 217 SYN-CLRHVPQLSM-VGCK-LQLLNLRNNA-LTT--LRGIE-------NLKSLYGLDLSY-NLLSEHSELEPLW--SLSS 280 (1096)
T ss_pred ccc-hhccccccch-hhhh-heeeeecccH-HHh--hhhHH-------hhhhhhccchhH-hhhhcchhhhHHH--HHHH
Confidence 874 3332111111 1243 8888898885 332 33344 366788899887 34432 2233333 2668
Q ss_pred ccEEecCCccccCC---ChHHHHHHHhcCCccEEEeccccccccCCccc
Q 015585 353 LHWLGIGQTRLASK---GNPVITEIHNERPWLTFCLDGCEIGCHDGWQF 398 (404)
Q Consensus 353 L~~L~l~~~~l~~~---~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 398 (404)
|+.|.+.||++.-. -....+++..+---..+-++|=.++..+.|..
T Consensus 281 L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l~~~efwk~ 329 (1096)
T KOG1859|consen 281 LIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKALGGREFWKR 329 (1096)
T ss_pred HHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecceeccchhhhhh
Confidence 89999999888422 11223333322122237777778888877753
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.75 E-value=1.3e-05 Score=80.94 Aligned_cols=235 Identities=16% Similarity=0.070 Sum_probs=117.4
Q ss_pred CCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCC
Q 015585 41 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS 120 (404)
Q Consensus 41 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 120 (404)
++.|++|-+.++.. .+.......+..+|.|+.||+++|. ....++.....+-+|++|++++ +
T Consensus 544 ~~~L~tLll~~n~~-------~l~~is~~ff~~m~~LrVLDLs~~~----------~l~~LP~~I~~Li~LryL~L~~-t 605 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSD-------WLLEISGEFFRSLPLLRVLDLSGNS----------SLSKLPSSIGELVHLRYLDLSD-T 605 (889)
T ss_pred CCccceEEEeecch-------hhhhcCHHHHhhCcceEEEECCCCC----------ccCcCChHHhhhhhhhcccccC-C
Confidence 66788888877510 0222233345678889999998753 1122222234566888888888 4
Q ss_pred CCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC-CCCHHHHHHhhCCCCCCEEeccCCCCC
Q 015585 121 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR-LITSETVKKLASSRNLEVLDLGGCKSI 199 (404)
Q Consensus 121 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~ 199 (404)
.+. .++.-+..++.|.+|++..+..... +..+...+++|+.|.+.... ......+..+..+.+|+.+....+.
T Consensus 606 ~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s-- 679 (889)
T KOG4658|consen 606 GIS--HLPSGLGNLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS-- 679 (889)
T ss_pred Ccc--ccchHHHHHHhhheecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch--
Confidence 554 2333356667888888887753221 13344457788888886543 2223334444455556655554321
Q ss_pred ChHHHHhhhCCCCCC----EEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCC-CCCccEEecC
Q 015585 200 ADTCLRSISCLRKLT----ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTI-SQSLTTLDLG 274 (404)
Q Consensus 200 ~~~~~~~l~~~~~L~----~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~-~~~L~~L~l~ 274 (404)
......+...+.|. .+.+..+.. .........+.+|+.|.+.+|. ..+..+.......... ++++..+.+.
T Consensus 680 -~~~~e~l~~~~~L~~~~~~l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~-~~e~~~~~~~~~~~~~~f~~l~~~~~~ 755 (889)
T KOG4658|consen 680 -VLLLEDLLGMTRLRSLLQSLSIEGCSK--RTLISSLGSLGNLEELSILDCG-ISEIVIEWEESLIVLLCFPNLSKVSIL 755 (889)
T ss_pred -hHhHhhhhhhHHHHHHhHhhhhccccc--ceeecccccccCcceEEEEcCC-CchhhcccccccchhhhHHHHHHHHhh
Confidence 11122222222222 121111110 0011111246778888888776 3222111110000011 3345555555
Q ss_pred CCCCCCHHHHHHHHHhCCCCceEeecCCCCCC
Q 015585 275 YMPGISDDGILTIAAAGIGIIDLCVRSCFYVT 306 (404)
Q Consensus 275 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~ 306 (404)
.|....+..+.. ..|+|+.|.+..|+.+.
T Consensus 756 ~~~~~r~l~~~~---f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 756 NCHMLRDLTWLL---FAPHLTSLSLVSCRLLE 784 (889)
T ss_pred ccccccccchhh---ccCcccEEEEecccccc
Confidence 554444333322 24788888888886444
No 48
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.70 E-value=2.2e-07 Score=72.18 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=34.2
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecc
Q 015585 13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTR 84 (404)
Q Consensus 13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 84 (404)
+....++++|.|+.+.++ ..++.|+. +.+|+.|++.+++ ++ +....++.++.|+.|+++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnq---------ie-~lp~~issl~klr~lnvgm 88 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQ---------IE-ELPTSISSLPKLRILNVGM 88 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccch---------hh-hcChhhhhchhhhheecch
Confidence 344456666777766665 23445554 6677777777652 21 1223456667777777654
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.41 E-value=4.1e-05 Score=50.14 Aligned_cols=34 Identities=35% Similarity=0.393 Sum_probs=14.6
Q ss_pred CCcEEeccCCCCChHHHHHHHhhCCCccEEeecCC
Q 015585 18 NLRSLSLVLDVITDELLITITASLPFLVELDLEDR 52 (404)
Q Consensus 18 ~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~ 52 (404)
+|++|+++++.+..... .....+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~l~~N 35 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPP-DSFSNLPNLETLDLSNN 35 (61)
T ss_dssp TESEEEETSSTESEECT-TTTTTGTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCH-HHHcCCCCCCEeEccCC
Confidence 45555555444442211 11123455555555543
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.30 E-value=6.5e-05 Score=49.20 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=15.7
Q ss_pred CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC
Q 015585 184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA 221 (404)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 221 (404)
.+++|++|++++ +.+.......+..+++|++|++++|
T Consensus 23 ~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 23 NLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444443 2333333333344444444444443
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.23 E-value=4e-05 Score=72.98 Aligned_cols=35 Identities=23% Similarity=0.115 Sum_probs=20.2
Q ss_pred CCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585 210 LRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 247 (404)
Q Consensus 210 ~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 247 (404)
++.++.|++++|++++.. ..+.|++|++|+|+.+.
T Consensus 186 l~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~ 220 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNC 220 (1096)
T ss_pred HHHhhhhccchhhhhhhH---HHHhcccccccccccch
Confidence 455666666666665432 22346666666666554
No 52
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.15 E-value=4.9e-06 Score=64.80 Aligned_cols=39 Identities=28% Similarity=0.219 Sum_probs=19.0
Q ss_pred cCCCCcEEeccCCCCCC-HHHHHhhhcCCCCcccEEecCCccccC
Q 015585 322 KSKQLRRLDLCNCIGLS-VDSLRWVKRPSFRGLHWLGIGQTRLAS 365 (404)
Q Consensus 322 ~~~~L~~L~l~~~~~i~-~~~~~~l~~~~~~~L~~L~l~~~~l~~ 365 (404)
.+.+|+.|.+..+.-++ +..+. .+..|++|.+.||+++.
T Consensus 148 ~lt~lqil~lrdndll~lpkeig-----~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 148 KLTNLQILSLRDNDLLSLPKEIG-----DLTRLRELHIQGNRLTV 187 (264)
T ss_pred hhcceeEEeeccCchhhCcHHHH-----HHHHHHHHhcccceeee
Confidence 35556666665533222 11111 14456666666666543
No 53
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.96 E-value=0.0011 Score=34.73 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=11.7
Q ss_pred CCCceEeecCCCCCCHHHHHHHH
Q 015585 292 IGIIDLCVRSCFYVTDASVEALA 314 (404)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~ 314 (404)
++|++|++++|+.++|.++..++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 44555555555555555554444
No 54
>PLN03150 hypothetical protein; Provisional
Probab=96.79 E-value=0.0033 Score=62.07 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=41.1
Q ss_pred ccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCC
Q 015585 44 LVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVS 123 (404)
Q Consensus 44 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~ 123 (404)
++.|+|+++ .+.......+..+++|+.|+++++. +... +......+++|+.|+++++ .+.
T Consensus 420 v~~L~L~~n---------~L~g~ip~~i~~L~~L~~L~Ls~N~---------l~g~-iP~~~~~l~~L~~LdLs~N-~ls 479 (623)
T PLN03150 420 IDGLGLDNQ---------GLRGFIPNDISKLRHLQSINLSGNS---------IRGN-IPPSLGSITSLEVLDLSYN-SFN 479 (623)
T ss_pred EEEEECCCC---------CccccCCHHHhCCCCCCEEECCCCc---------ccCc-CChHHhCCCCCCEEECCCC-CCC
Confidence 556666664 2222223345566667777776542 2111 1111245666777777664 332
Q ss_pred HHHHHHHHHhCCCCcEEEecCCC
Q 015585 124 DAGFAAILLSCHSLKKFEVRSAS 146 (404)
Q Consensus 124 ~~~~~~l~~~~~~L~~L~l~~~~ 146 (404)
.. +...+..+++|+.|+++++.
T Consensus 480 g~-iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 480 GS-IPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CC-CchHHhcCCCCCEEECcCCc
Confidence 21 12224456677777777664
No 55
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.72 E-value=0.0019 Score=33.79 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.5
Q ss_pred CCCCcEEeccCCCCCCHHHHHhhh
Q 015585 323 SKQLRRLDLCNCIGLSVDSLRWVK 346 (404)
Q Consensus 323 ~~~L~~L~l~~~~~i~~~~~~~l~ 346 (404)
|++|+.|++++|.+||+.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 678999999999999999988775
No 56
>PLN03150 hypothetical protein; Provisional
Probab=96.64 E-value=0.0041 Score=61.37 Aligned_cols=107 Identities=19% Similarity=0.091 Sum_probs=63.3
Q ss_pred CCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCC
Q 015585 188 LEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQS 267 (404)
Q Consensus 188 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~ 267 (404)
++.|+|+++ .+.......+..+++|+.|++++|.++......+ ..+++|+.|++++|. +.......+. .+++
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~-lsg~iP~~l~-----~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNS-FNGSIPESLG-----QLTS 491 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCC-CCCCCchHHh-----cCCC
Confidence 667777763 5554445566777888888888877654322233 247788888888775 4332222333 5678
Q ss_pred ccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCC
Q 015585 268 LTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 303 (404)
Q Consensus 268 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 303 (404)
|+.|+++++ .++......+.....++..+++.+|+
T Consensus 492 L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 492 LRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCEEECcCC-cccccCChHHhhccccCceEEecCCc
Confidence 888888775 44332222222223456677777665
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.56 E-value=0.00026 Score=59.37 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=38.8
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCH-HHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585 263 TISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTD-ASVEALARKQPDQEKSKQLRRLDLCNCI 335 (404)
Q Consensus 263 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 335 (404)
+.+|+|++|.++..+.-...++..+...+|+|++|++++|. +.+ ..+..+. ..++|..|++.+|.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~-------~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLK-------ELENLKSLDLFNCS 127 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhh-------hhcchhhhhcccCC
Confidence 45667777777664333345566666667777777777774 442 2233333 25667777777763
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.11 E-value=0.009 Score=54.64 Aligned_cols=55 Identities=9% Similarity=0.230 Sum_probs=24.9
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585 108 CKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 172 (404)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 172 (404)
+++++.|++++| .++... ..-.+|+.|.+.+|..++. +... ..++|+.|.+.+|.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLts--LP~~--LP~nLe~L~Ls~Cs 105 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTT--LPGS--IPEGLEKLTVCHCP 105 (426)
T ss_pred hcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCccc--CCch--hhhhhhheEccCcc
Confidence 466666666665 322211 1113566666666543211 1110 12356666666553
No 59
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.96 E-value=0.0064 Score=56.77 Aligned_cols=190 Identities=22% Similarity=0.277 Sum_probs=104.3
Q ss_pred EEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhh-hcCC-CCCceEEecccccCCCCCccccCh
Q 015585 21 SLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQS-LGSC-HHLTGLSLTRCRHNHQGTFKRVND 98 (404)
Q Consensus 21 ~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~~-~~L~~L~l~~~~~~~~~~~~~~~~ 98 (404)
.+++..+.+.. ....+.. .+.++.+++.++.. + .+.. .... ++|+.|++++.. +..
T Consensus 97 ~l~~~~~~~~~-~~~~~~~-~~~l~~L~l~~n~i---------~--~i~~~~~~~~~nL~~L~l~~N~---------i~~ 154 (394)
T COG4886 97 SLDLNLNRLRS-NISELLE-LTNLTSLDLDNNNI---------T--DIPPLIGLLKSNLKELDLSDNK---------IES 154 (394)
T ss_pred eeecccccccc-Cchhhhc-ccceeEEecCCccc---------c--cCccccccchhhcccccccccc---------hhh
Confidence 45666544421 1222222 46788888887532 1 1122 2344 378888887642 221
Q ss_pred hhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHH
Q 015585 99 MGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSET 178 (404)
Q Consensus 99 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 178 (404)
. ..-...+++|+.|+++.+ .+.+.. ......++|+.|+++++.. . .+.........|+++.++++..+. .
T Consensus 155 l--~~~~~~l~~L~~L~l~~N-~l~~l~--~~~~~~~~L~~L~ls~N~i-~--~l~~~~~~~~~L~~l~~~~N~~~~--~ 224 (394)
T COG4886 155 L--PSPLRNLPNLKNLDLSFN-DLSDLP--KLLSNLSNLNNLDLSGNKI-S--DLPPEIELLSALEELDLSNNSIIE--L 224 (394)
T ss_pred h--hhhhhccccccccccCCc-hhhhhh--hhhhhhhhhhheeccCCcc-c--cCchhhhhhhhhhhhhhcCCccee--c
Confidence 1 011256788888888884 444332 2222557888888888852 1 112211234457888887753121 2
Q ss_pred HHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585 179 VKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 247 (404)
Q Consensus 179 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 247 (404)
+..+..+.++..+.+.. +.+... ...+..++++++|++.++.+++... .....+++.|++++..
T Consensus 225 ~~~~~~~~~l~~l~l~~-n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 225 LSSLSNLKNLSGLELSN-NKLEDL-PESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNS 288 (394)
T ss_pred chhhhhcccccccccCC-ceeeec-cchhccccccceecccccccccccc---ccccCccCEEeccCcc
Confidence 23344556666666544 222221 3444567778888888887765433 2246778888887765
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.80 E-value=0.012 Score=35.34 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=21.0
Q ss_pred CCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585 324 KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 364 (404)
Q Consensus 324 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~ 364 (404)
++|++|+++++ .+++... .+. .+++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~-~l~--~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP-ELS--NLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG-HGT--TCTTSSEEEETSSCCS
T ss_pred CcceEEEccCC-CCcccCc-hHh--CCCCCCEEEecCCCCC
Confidence 35677777773 5554322 132 4777777777777764
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.75 E-value=0.02 Score=34.35 Aligned_cols=36 Identities=42% Similarity=0.514 Sum_probs=16.0
Q ss_pred CCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccC
Q 015585 187 NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 224 (404)
Q Consensus 187 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 224 (404)
+|++|+++++ .+.+-. ..++.+++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N-~i~~l~-~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLP-PELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSS-S-SSHG-GHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCC-CCcccC-chHhCCCCCCEEEecCCCCC
Confidence 4555555552 343211 12455555555555555444
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.74 E-value=0.01 Score=48.07 Aligned_cols=64 Identities=14% Similarity=0.047 Sum_probs=27.0
Q ss_pred CCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585 292 IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR 362 (404)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 362 (404)
|+|+.|.+.+|....-..+..++. ||.|+.|.+-+++.-.....+......+|+|+.|++.+..
T Consensus 88 p~l~~L~LtnNsi~~l~dl~pLa~-------~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 88 PNLKTLILTNNSIQELGDLDPLAS-------CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cccceEEecCcchhhhhhcchhcc-------CCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 555555555543111222333332 5555555555532222222222222235556666555443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.63 E-value=0.0026 Score=53.48 Aligned_cols=11 Identities=45% Similarity=0.431 Sum_probs=4.3
Q ss_pred CCCCCEEeccC
Q 015585 185 SRNLEVLDLGG 195 (404)
Q Consensus 185 ~~~L~~L~l~~ 195 (404)
+.+|..|++..
T Consensus 115 l~nL~~Ldl~n 125 (260)
T KOG2739|consen 115 LENLKSLDLFN 125 (260)
T ss_pred hcchhhhhccc
Confidence 33344444433
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.0032 Score=53.50 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=66.4
Q ss_pred CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccc
Q 015585 16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 95 (404)
Q Consensus 16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 95 (404)
+.+++.|++-|+.+++.. +-..++.|+.|.|+-|.+ ..+..+..|++|+.|.|..+ .
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkI-----------ssL~pl~rCtrLkElYLRkN---------~ 74 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKI-----------SSLAPLQRCTRLKELYLRKN---------C 74 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeecccc-----------ccchhHHHHHHHHHHHHHhc---------c
Confidence 456666777777777543 334578888888887532 23455667788888877653 2
Q ss_pred cChhhHHHHHhcCCCCcEEEcCCCCCCCHH---HHHHHHHhCCCCcEEEecCCCCCCHHHHHH
Q 015585 96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDA---GFAAILLSCHSLKKFEVRSASFLSDLAFHD 155 (404)
Q Consensus 96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~ 155 (404)
+.+..-.....++|+|+.|.|..++-.... --..++..+|+|+.|+=- -++...+..
T Consensus 75 I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv---~VteeEle~ 134 (388)
T KOG2123|consen 75 IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV---PVTEEELEE 134 (388)
T ss_pred cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc---cccHHHHHH
Confidence 433333333467788888888664333222 123446667888776532 244444444
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.02 E-value=0.026 Score=45.82 Aligned_cols=86 Identities=28% Similarity=0.217 Sum_probs=36.2
Q ss_pred CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHH-HHHHHHhcCCCcCEEeecCCCCCcHH-HHH-HHHhh
Q 015585 184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDS-GLSILAQGNLPIMNLCLRGCKRVTDK-GIS-HLLCV 260 (404)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~-~l~~~ 260 (404)
+++.|..|.+.. +.++.-...--.-.|+|..|.+.+|++..- .+..++ .||.|++|.+-+++ +... ... .+.
T Consensus 62 ~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Np-v~~k~~YR~yvl-- 136 (233)
T KOG1644|consen 62 HLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNP-VEHKKNYRLYVL-- 136 (233)
T ss_pred CccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCc-hhcccCceeEEE--
Confidence 444555555544 333332211112244555555555544322 122222 35555555555554 2211 111 111
Q ss_pred cCCCCCCccEEecCCC
Q 015585 261 GGTISQSLTTLDLGYM 276 (404)
Q Consensus 261 ~~~~~~~L~~L~l~~~ 276 (404)
..+|+|+.||+...
T Consensus 137 --~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 137 --YKLPSLRTLDFQKV 150 (233)
T ss_pred --EecCcceEeehhhh
Confidence 34566666666553
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=0.0072 Score=51.43 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=43.2
Q ss_pred CccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEE
Q 015585 162 ALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNL 241 (404)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L 241 (404)
+.+.|+.-||. +.| +....+++.|++|.|+- +.++ .+..+..|++|++|.|..|.|.+..-....+.+|+|+.|
T Consensus 20 ~vkKLNcwg~~-L~D--Isic~kMp~lEVLsLSv-NkIs--sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDD--ISICEKMPLLEVLSLSV-NKIS--SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCC-ccH--HHHHHhcccceeEEeec-cccc--cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45556666654 333 22233566667776665 3333 244455666667776666666553333333356666666
Q ss_pred eecCCC
Q 015585 242 CLRGCK 247 (404)
Q Consensus 242 ~l~~~~ 247 (404)
=|..++
T Consensus 94 WL~ENP 99 (388)
T KOG2123|consen 94 WLDENP 99 (388)
T ss_pred hhccCC
Confidence 665555
No 67
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.64 E-value=0.034 Score=28.24 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=12.3
Q ss_pred CCCceEeecCCCCCCHHHHHHHH
Q 015585 292 IGIIDLCVRSCFYVTDASVEALA 314 (404)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~ 314 (404)
++|+.|+|++|. +++.++..++
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHhC
Confidence 566666666664 6666666554
No 68
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.59 E-value=0.0049 Score=57.88 Aligned_cols=14 Identities=36% Similarity=0.282 Sum_probs=7.7
Q ss_pred hcCCCCCceEEecc
Q 015585 71 LGSCHHLTGLSLTR 84 (404)
Q Consensus 71 l~~~~~L~~L~l~~ 84 (404)
+..+++|++|++++
T Consensus 114 l~~~~~L~~L~ls~ 127 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSF 127 (414)
T ss_pred hhhhhcchheeccc
Confidence 34455555665555
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.39 E-value=0.067 Score=49.92 Aligned_cols=175 Identities=22% Similarity=0.200 Sum_probs=103.5
Q ss_pred hhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcC-CCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCC
Q 015585 70 SLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGC-KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFL 148 (404)
Q Consensus 70 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 148 (404)
.+...+.++.|++.+.. ...+.. ..... ++|+.|++++. .+... ..-+..+++|+.|+++++. +
T Consensus 111 ~~~~~~~l~~L~l~~n~------i~~i~~-----~~~~~~~nL~~L~l~~N-~i~~l--~~~~~~l~~L~~L~l~~N~-l 175 (394)
T COG4886 111 ELLELTNLTSLDLDNNN------ITDIPP-----LIGLLKSNLKELDLSDN-KIESL--PSPLRNLPNLKNLDLSFND-L 175 (394)
T ss_pred hhhcccceeEEecCCcc------cccCcc-----ccccchhhccccccccc-chhhh--hhhhhccccccccccCCch-h
Confidence 34455778888886632 112221 11233 38999999884 44332 1225677999999999886 2
Q ss_pred CHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHh-hCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHH
Q 015585 149 SDLAFHDLTGVPCALVEVRLLWCRLITSETVKKL-ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSG 227 (404)
Q Consensus 149 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 227 (404)
. .+.......+.|+.|.++++. +.+ +... .....|+++.+.+. . ....+..+....++..+.+.++.+.+.
T Consensus 176 ~--~l~~~~~~~~~L~~L~ls~N~-i~~--l~~~~~~~~~L~~l~~~~N-~-~~~~~~~~~~~~~l~~l~l~~n~~~~~- 247 (394)
T COG4886 176 S--DLPKLLSNLSNLNNLDLSGNK-ISD--LPPEIELLSALEELDLSNN-S-IIELLSSLSNLKNLSGLELSNNKLEDL- 247 (394)
T ss_pred h--hhhhhhhhhhhhhheeccCCc-ccc--CchhhhhhhhhhhhhhcCC-c-ceecchhhhhcccccccccCCceeeec-
Confidence 2 222222256788999998864 222 1122 23455888888773 2 122334445667777777777765541
Q ss_pred HHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCC
Q 015585 228 LSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 276 (404)
Q Consensus 228 l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~ 276 (404)
......+++++.|+++++. +..... + .....++.|++++.
T Consensus 248 -~~~~~~l~~l~~L~~s~n~-i~~i~~--~-----~~~~~l~~L~~s~n 287 (394)
T COG4886 248 -PESIGNLSNLETLDLSNNQ-ISSISS--L-----GSLTNLRELDLSGN 287 (394)
T ss_pred -cchhccccccceecccccc-cccccc--c-----cccCccCEEeccCc
Confidence 2223356779999998776 444322 2 35678999999874
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.28 E-value=0.044 Score=50.30 Aligned_cols=145 Identities=17% Similarity=0.242 Sum_probs=82.5
Q ss_pred HHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC-ccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHH
Q 015585 177 ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 255 (404)
Q Consensus 177 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~ 255 (404)
+....+..+.++++|++++| .+... +. -.++|+.|.+.+| .++. +... ..++|++|.+++|..+.
T Consensus 43 ~a~~r~~~~~~l~~L~Is~c-~L~sL--P~--LP~sLtsL~Lsnc~nLts--LP~~--LP~nLe~L~Ls~Cs~L~----- 108 (426)
T PRK15386 43 EITPQIEEARASGRLYIKDC-DIESL--PV--LPNELTEITIENCNNLTT--LPGS--IPEGLEKLTVCHCPEIS----- 108 (426)
T ss_pred HHHHHHHHhcCCCEEEeCCC-CCccc--CC--CCCCCcEEEccCCCCccc--CCch--hhhhhhheEccCccccc-----
Confidence 34444556899999999987 43322 11 2346999999875 3211 1100 13579999999886442
Q ss_pred HHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585 256 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 335 (404)
Q Consensus 256 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 335 (404)
. ..++|+.|++... .... +..+ .++|+.|.+.++....... +...+ -++|+.|.+++|.
T Consensus 109 s-------LP~sLe~L~L~~n-~~~~--L~~L---PssLk~L~I~~~n~~~~~~---lp~~L-----PsSLk~L~Is~c~ 167 (426)
T PRK15386 109 G-------LPESVRSLEIKGS-ATDS--IKNV---PNGLTSLSINSYNPENQAR---IDNLI-----SPSLKTLSLTGCS 167 (426)
T ss_pred c-------cccccceEEeCCC-CCcc--cccC---cchHhheeccccccccccc---ccccc-----CCcccEEEecCCC
Confidence 1 2357888888652 2221 2222 2578888875432111111 11111 2689999999987
Q ss_pred CCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585 336 GLSVDSLRWVKRPSFRGLHWLGIGQTR 362 (404)
Q Consensus 336 ~i~~~~~~~l~~~~~~~L~~L~l~~~~ 362 (404)
.+. +...--.+|+.|.++.+.
T Consensus 168 ~i~------LP~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 168 NII------LPEKLPESLQSITLHIEQ 188 (426)
T ss_pred ccc------CcccccccCcEEEecccc
Confidence 542 110112489999988763
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.28 E-value=0.045 Score=27.77 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=9.9
Q ss_pred CCCCEEEccCCccCHHHHHHH
Q 015585 211 RKLTALNLTGADITDSGLSIL 231 (404)
Q Consensus 211 ~~L~~L~l~~~~l~~~~l~~l 231 (404)
++|++|++++|.++++++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 445555555555555555444
No 72
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=93.42 E-value=0.15 Score=47.92 Aligned_cols=98 Identities=19% Similarity=0.169 Sum_probs=56.9
Q ss_pred HHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCC
Q 015585 287 IAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 366 (404)
Q Consensus 287 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~ 366 (404)
.....|.+..+.+++|....-+.+..+++ ..|+|+.|+|+++ ........++.+-....|++|.+.||++.+.
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq------~apklk~L~LS~N-~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHLDALSSLSQ------IAPKLKTLDLSHN-HSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred hhcCCcceeeeecccchhhchhhhhHHHH------hcchhheeecccc-hhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 33345777777777776444455566666 6777777777773 2111222233333366778888888877543
Q ss_pred ---ChHHHHHHHhcCCccEEEeccccccc
Q 015585 367 ---GNPVITEIHNERPWLTFCLDGCEIGC 392 (404)
Q Consensus 367 ---~~~~~~~~~~~~~~l~l~~~~~~~~~ 392 (404)
..+.+.++.+.+|++. .++|.+..-
T Consensus 286 f~~~s~yv~~i~~~FPKL~-~LDG~ev~~ 313 (585)
T KOG3763|consen 286 FSDRSEYVSAIRELFPKLL-RLDGVEVQP 313 (585)
T ss_pred hhhhHHHHHHHHHhcchhe-eecCcccCc
Confidence 3445556677777765 223444444
No 73
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.63 E-value=0.015 Score=54.70 Aligned_cols=17 Identities=12% Similarity=0.012 Sum_probs=10.6
Q ss_pred CCCcccEEecCCccccC
Q 015585 349 SFRGLHWLGIGQTRLAS 365 (404)
Q Consensus 349 ~~~~L~~L~l~~~~l~~ 365 (404)
..++++.+.+.+++...
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 303 AAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccccCcccc
Confidence 35567777777666543
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.11 E-value=0.36 Score=25.53 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=14.8
Q ss_pred CCCCEEEccCCccCHHHHHHHHh
Q 015585 211 RKLTALNLTGADITDSGLSILAQ 233 (404)
Q Consensus 211 ~~L~~L~l~~~~l~~~~l~~l~~ 233 (404)
++|+.|+|++|.+.+.+...+++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 45666677666666666666554
No 75
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.01 E-value=0.36 Score=25.52 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=15.3
Q ss_pred CCCceEeecCCCCCCHHHHHHHHh
Q 015585 292 IGIIDLCVRSCFYVTDASVEALAR 315 (404)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~~ 315 (404)
++|++|+|++|. +++++...+++
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHH
Confidence 456777777664 67777766665
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.18 E-value=0.064 Score=40.83 Aligned_cols=34 Identities=21% Similarity=0.082 Sum_probs=14.9
Q ss_pred CCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccC
Q 015585 160 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGG 195 (404)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 195 (404)
++.++.|++.++. +.+...+ ++..+.|+.|+++.
T Consensus 76 f~t~t~lNl~~ne-isdvPeE-~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 76 FPTATTLNLANNE-ISDVPEE-LAAMPALRSLNLRF 109 (177)
T ss_pred cchhhhhhcchhh-hhhchHH-HhhhHHhhhccccc
Confidence 3444555554432 3322222 44455555555544
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.18 E-value=0.4 Score=21.95 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=6.8
Q ss_pred CcccEEecCCcccc
Q 015585 351 RGLHWLGIGQTRLA 364 (404)
Q Consensus 351 ~~L~~L~l~~~~l~ 364 (404)
++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35666666666653
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=88.06 E-value=0.31 Score=37.24 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=21.3
Q ss_pred CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCcc
Q 015585 184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI 223 (404)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 223 (404)
.++.++.|++.+ +.+++.. ..++.+|.|+.|+++.|.+
T Consensus 75 kf~t~t~lNl~~-neisdvP-eE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 75 KFPTATTLNLAN-NEISDVP-EELAAMPALRSLNLRFNPL 112 (177)
T ss_pred ccchhhhhhcch-hhhhhch-HHHhhhHHhhhcccccCcc
Confidence 455666666665 3444332 2356666666666666654
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.37 E-value=2.1 Score=40.62 Aligned_cols=66 Identities=23% Similarity=0.257 Sum_probs=30.5
Q ss_pred HhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCC-CCCH-HHHHHHHHhCCCCceEeecCCC
Q 015585 232 AQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMP-GISD-DGILTIAAAGIGIIDLCVRSCF 303 (404)
Q Consensus 232 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~-~l~~-~~~~~l~~~~~~L~~L~l~~~~ 303 (404)
....|.+..+.++++....-+.+..+. ...|+|..|+|++.. .+.. ..+..+ ....|++|.+.+|+
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~ssls----q~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLS----QIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNP 281 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHH----Hhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCc
Confidence 334555555555555533334444444 345566666665531 1111 112222 12456666666665
No 80
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=76.26 E-value=0.63 Score=22.91 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=7.1
Q ss_pred ccEEecCCcccc
Q 015585 353 LHWLGIGQTRLA 364 (404)
Q Consensus 353 L~~L~l~~~~l~ 364 (404)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 556666666554
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=76.09 E-value=2.6 Score=21.53 Aligned_cols=17 Identities=24% Similarity=0.265 Sum_probs=11.8
Q ss_pred CcccEEecCCccccCCC
Q 015585 351 RGLHWLGIGQTRLASKG 367 (404)
Q Consensus 351 ~~L~~L~l~~~~l~~~~ 367 (404)
++|+.|++++|.+....
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 56777777777776553
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=76.09 E-value=2.6 Score=21.53 Aligned_cols=17 Identities=24% Similarity=0.265 Sum_probs=11.8
Q ss_pred CcccEEecCCccccCCC
Q 015585 351 RGLHWLGIGQTRLASKG 367 (404)
Q Consensus 351 ~~L~~L~l~~~~l~~~~ 367 (404)
++|+.|++++|.+....
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 56777777777776553
No 83
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=75.91 E-value=0.83 Score=43.46 Aligned_cols=133 Identities=26% Similarity=0.296 Sum_probs=75.7
Q ss_pred HhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcH--HHHHHHHhhcCCCCCCccEEecCCCCCCCHH
Q 015585 205 RSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTD--KGISHLLCVGGTISQSLTTLDLGYMPGISDD 282 (404)
Q Consensus 205 ~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~--~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~ 282 (404)
.+++.+..|+.|+++.|+++.-... + ..-.|+.|.++++. ++- +.+. ..++|..|+++.| ++...
T Consensus 115 ~~i~~L~~lt~l~ls~NqlS~lp~~-l--C~lpLkvli~sNNk-l~~lp~~ig--------~~~tl~~ld~s~n-ei~sl 181 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQLSHLPDG-L--CDLPLKVLIVSNNK-LTSLPEEIG--------LLPTLAHLDVSKN-EIQSL 181 (722)
T ss_pred hhhhhhhHHHHhhhccchhhcCChh-h--hcCcceeEEEecCc-cccCCcccc--------cchhHHHhhhhhh-hhhhc
Confidence 3445566677777777654321111 1 12347788877765 221 1121 3467888888876 33221
Q ss_pred HHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585 283 GILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR 362 (404)
Q Consensus 283 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 362 (404)
. ..+ ..+..|+.|.+..+. +.+. ...+. . -.|.+||++. ++|+...+..-. +..|++|.+.+|+
T Consensus 182 p-sql-~~l~slr~l~vrRn~-l~~l-p~El~-~-------LpLi~lDfSc-Nkis~iPv~fr~---m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 182 P-SQL-GYLTSLRDLNVRRNH-LEDL-PEELC-S-------LPLIRLDFSC-NKISYLPVDFRK---MRHLQVLQLENNP 245 (722)
T ss_pred h-HHh-hhHHHHHHHHHhhhh-hhhC-CHHHh-C-------Cceeeeeccc-Cceeecchhhhh---hhhheeeeeccCC
Confidence 1 111 134567788887764 2111 12222 2 3488899876 688766554432 7799999999999
Q ss_pred ccCC
Q 015585 363 LASK 366 (404)
Q Consensus 363 l~~~ 366 (404)
+...
T Consensus 246 LqSP 249 (722)
T KOG0532|consen 246 LQSP 249 (722)
T ss_pred CCCC
Confidence 8643
No 84
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=63.02 E-value=2.2 Score=40.76 Aligned_cols=40 Identities=13% Similarity=-0.081 Sum_probs=25.0
Q ss_pred cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCC
Q 015585 12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPN 54 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~ 54 (404)
.+..+..|++|+|+.|.++.. +..+- .--|+.|-+++|+.
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~l-p~~lC--~lpLkvli~sNNkl 155 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSHL-PDGLC--DLPLKVLIVSNNKL 155 (722)
T ss_pred hhhhhhHHHHhhhccchhhcC-Chhhh--cCcceeEEEecCcc
Confidence 356677788888887776632 22222 23478888887644
No 85
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=57.61 E-value=11 Score=19.48 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=15.2
Q ss_pred cccEEecCCccccCCChHHHHHHHhcCC
Q 015585 352 GLHWLGIGQTRLASKGNPVITEIHNERP 379 (404)
Q Consensus 352 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 379 (404)
+|++|.+....+. ++..++.+...||
T Consensus 1 sLKtL~L~~v~f~--~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFS--DEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEEC--ChhHHHHhhccCc
Confidence 3666777666552 4456666655554
No 86
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=56.86 E-value=21 Score=31.86 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=39.1
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHHhC---CCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCH
Q 015585 263 TISQSLTTLDLGYMPGISDDGILTIAAAG---IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV 339 (404)
Q Consensus 263 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~ 339 (404)
..-|.++...+.....++...+..+...+ +..+...+.+. ..++...-+++.++. .++.|++|++.+ +.||.
T Consensus 195 ~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~---~n~sl~slnves-nFItg 269 (353)
T KOG3735|consen 195 ENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLK---ENKSLTSLNVES-NFITG 269 (353)
T ss_pred cCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHh---hcchhhheeccc-ccccc
Confidence 34456666666665556555444443332 33333344333 234433344444444 566666666666 46666
Q ss_pred HHHHh
Q 015585 340 DSLRW 344 (404)
Q Consensus 340 ~~~~~ 344 (404)
.++..
T Consensus 270 ~gi~a 274 (353)
T KOG3735|consen 270 LGIMA 274 (353)
T ss_pred HHHHH
Confidence 55543
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=54.72 E-value=12 Score=28.04 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=5.7
Q ss_pred ccCCCCCcEEecc
Q 015585 13 YYSSFNLRSLSLV 25 (404)
Q Consensus 13 ~~~~~~L~~L~L~ 25 (404)
+..+.+|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 4555566666655
No 88
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=54.23 E-value=35 Score=30.56 Aligned_cols=82 Identities=24% Similarity=0.285 Sum_probs=40.8
Q ss_pred HHHHHHHcCCCCccEEEccCCCCCCHHHHHHhh----CCCCCCEEeccCCCCCChHHHHhh----hCCCCCCEEEccCCc
Q 015585 151 LAFHDLTGVPCALVEVRLLWCRLITSETVKKLA----SSRNLEVLDLGGCKSIADTCLRSI----SCLRKLTALNLTGAD 222 (404)
Q Consensus 151 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~ 222 (404)
.++..+-..-+.++.+++++...++...+..+. .....+.+.+.+. ...+...-++ ..++.|++|++..|-
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnvesnF 266 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVESNF 266 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheeccccc
Confidence 334444455566666666666556555544433 3344444444442 2222222111 235566666666666
Q ss_pred cCHHHHHHHHh
Q 015585 223 ITDSGLSILAQ 233 (404)
Q Consensus 223 l~~~~l~~l~~ 233 (404)
|++.++.++..
T Consensus 267 Itg~gi~a~~~ 277 (353)
T KOG3735|consen 267 ITGLGIMALLR 277 (353)
T ss_pred cccHHHHHHHH
Confidence 66665555544
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=50.94 E-value=23 Score=33.31 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=31.0
Q ss_pred CCCceEeecCCCCCC---HHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhc--CCCCcccEEecCCccc
Q 015585 292 IGIIDLCVRSCFYVT---DASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR--PSFRGLHWLGIGQTRL 363 (404)
Q Consensus 292 ~~L~~L~l~~~~~~~---~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~l 363 (404)
.-+..+.++.|+ .. ...+..++ .-+.++.|++++ +...+.+...+.+ ....+++.+..+.|.+
T Consensus 413 g~l~el~ls~~~-lka~l~s~in~l~-------stqtl~kldisg-n~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 413 GVLAELSLSPGP-LKAGLESAINKLL-------STQTLAKLDISG-NGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccccCcccCCCc-ccccHHHHHHhhc-------cCcccccccccC-CCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 446666666664 22 12223333 356677777777 4544444333321 1133566666665554
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=45.73 E-value=20 Score=18.54 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=5.4
Q ss_pred CCcEEeccCCCC
Q 015585 18 NLRSLSLVLDVI 29 (404)
Q Consensus 18 ~L~~L~L~~~~~ 29 (404)
+|+.|+++.|.|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 444444444443
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=44.21 E-value=15 Score=19.09 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=11.7
Q ss_pred CcccEEecCCccccC
Q 015585 351 RGLHWLGIGQTRLAS 365 (404)
Q Consensus 351 ~~L~~L~l~~~~l~~ 365 (404)
++|++|++++|.+++
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 468888888888764
Done!