Query 015585
Match_columns 404
No_of_seqs 219 out of 2762
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 15:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 7.5E-29 2.5E-33 242.3 27.8 342 14-386 102-538 (594)
2 2p1m_B Transport inhibitor res 100.0 3.4E-28 1.2E-32 237.6 31.6 328 15-362 128-542 (594)
3 3ogk_B Coronatine-insensitive 100.0 1.3E-27 4.3E-32 233.5 30.0 344 15-391 110-526 (592)
4 3ogk_B Coronatine-insensitive 100.0 8.5E-28 2.9E-32 234.7 25.0 333 19-385 140-544 (592)
5 1z7x_W Ribonuclease inhibitor; 100.0 3.1E-26 1.1E-30 216.8 32.4 224 131-363 166-410 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-26 5E-31 219.0 29.6 351 13-393 24-413 (461)
7 4fmz_A Internalin; leucine ric 99.9 9.8E-22 3.4E-26 178.8 18.5 308 11-391 38-346 (347)
8 4fmz_A Internalin; leucine ric 99.9 6.5E-22 2.2E-26 180.0 16.7 287 11-364 60-346 (347)
9 3v47_A TOLL-like receptor 5B a 99.9 2.3E-23 8E-28 196.7 3.2 333 17-395 30-412 (455)
10 2ast_B S-phase kinase-associat 99.9 6.4E-20 2.2E-24 166.0 24.8 250 110-384 48-301 (336)
11 2ast_B S-phase kinase-associat 99.9 4.4E-20 1.5E-24 167.1 20.9 218 17-258 70-292 (336)
12 3t6q_A CD180 antigen; protein- 99.8 9.6E-23 3.3E-27 199.5 1.9 261 107-395 299-564 (606)
13 2ca6_A RAN GTPase-activating p 99.8 3.9E-19 1.3E-23 163.9 24.9 253 107-367 30-319 (386)
14 2ca6_A RAN GTPase-activating p 99.8 1.6E-19 5.6E-24 166.5 21.8 256 129-394 26-319 (386)
15 1o6v_A Internalin A; bacterial 99.8 1.7E-20 6E-25 177.3 15.0 309 12-394 63-391 (466)
16 3vq2_A TLR4, TOLL-like recepto 99.8 8.7E-23 3E-27 199.8 -2.1 139 234-395 422-562 (606)
17 3v47_A TOLL-like receptor 5B a 99.8 1.8E-21 6.2E-26 183.7 3.4 330 11-380 48-426 (455)
18 2z7x_B TOLL-like receptor 1, v 99.8 3.3E-21 1.1E-25 185.0 5.1 106 17-146 21-126 (520)
19 3rgz_A Protein brassinosteroid 99.8 1.7E-22 5.8E-27 202.4 -4.3 336 12-392 95-456 (768)
20 2z81_A CD282 antigen, TOLL-lik 99.8 2.8E-20 9.5E-25 179.8 11.4 59 17-85 26-84 (549)
21 2z63_A TOLL-like receptor 4, v 99.8 8.5E-22 2.9E-26 191.3 -1.6 164 208-394 370-534 (570)
22 3t6q_A CD180 antigen; protein- 99.8 8.5E-22 2.9E-26 192.7 -1.7 41 12-53 76-116 (606)
23 2id5_A Lingo-1, leucine rich r 99.8 1.8E-21 6.2E-26 184.8 -1.0 302 17-364 32-333 (477)
24 2id5_A Lingo-1, leucine rich r 99.8 2E-21 6.9E-26 184.5 -1.2 322 20-394 14-336 (477)
25 1ziw_A TOLL-like receptor 3; i 99.8 5.4E-21 1.8E-25 189.6 1.4 338 17-394 248-625 (680)
26 3rgz_A Protein brassinosteroid 99.8 3.6E-22 1.2E-26 200.1 -7.4 235 132-393 315-553 (768)
27 3o6n_A APL1; leucine-rich repe 99.8 2.5E-20 8.6E-25 172.2 4.3 175 15-223 43-217 (390)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 8.8E-21 3E-25 183.7 -0.3 161 208-394 350-513 (562)
29 1o6v_A Internalin A; bacterial 99.8 2E-18 6.8E-23 163.2 14.3 295 13-366 86-390 (466)
30 3o6n_A APL1; leucine-rich repe 99.8 7.1E-20 2.4E-24 169.2 4.3 313 13-394 65-377 (390)
31 4ecn_A Leucine-rich repeat pro 99.8 6.2E-20 2.1E-24 183.5 3.5 330 12-392 443-841 (876)
32 4eco_A Uncharacterized protein 99.8 2E-20 7E-25 183.3 -0.2 334 12-394 201-603 (636)
33 3goz_A Leucine-rich repeat-con 99.8 1.3E-17 4.5E-22 152.2 17.4 168 71-247 18-207 (362)
34 3goz_A Leucine-rich repeat-con 99.8 2.3E-18 7.7E-23 157.3 11.5 255 101-366 14-299 (362)
35 4ecn_A Leucine-rich repeat pro 99.8 8.6E-19 3E-23 175.2 8.3 241 39-303 445-708 (876)
36 3j0a_A TOLL-like receptor 5; m 99.8 4.7E-21 1.6E-25 194.0 -8.1 60 17-85 24-83 (844)
37 3oja_B Anopheles plasmodium-re 99.8 2E-19 7E-24 175.1 3.7 311 15-393 49-360 (597)
38 2z7x_B TOLL-like receptor 1, v 99.8 4.5E-19 1.5E-23 170.2 5.6 161 208-394 321-484 (520)
39 2z81_A CD282 antigen, TOLL-lik 99.7 3.4E-18 1.2E-22 165.2 11.5 204 16-247 4-207 (549)
40 3bz5_A Internalin-J, INLJ; leu 99.7 2.9E-19 1E-23 167.8 3.4 207 12-276 37-243 (457)
41 1ziw_A TOLL-like receptor 3; i 99.7 5.1E-19 1.7E-23 175.4 5.2 91 290-392 327-419 (680)
42 2z63_A TOLL-like receptor 4, v 99.7 3.5E-20 1.2E-24 180.0 -3.6 187 159-366 345-533 (570)
43 3oja_B Anopheles plasmodium-re 99.7 6.2E-19 2.1E-23 171.7 4.7 302 13-381 71-372 (597)
44 4eco_A Uncharacterized protein 99.7 2.4E-19 8.2E-24 175.7 1.6 243 39-303 203-468 (636)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.7E-18 1.6E-22 164.5 6.1 161 183-366 350-512 (562)
46 3j0a_A TOLL-like receptor 5; m 99.7 1.5E-18 5.1E-23 175.7 2.4 116 11-146 42-159 (844)
47 3vq2_A TLR4, TOLL-like recepto 99.7 1.2E-18 4.1E-23 170.4 -0.3 200 17-242 32-235 (606)
48 3bz5_A Internalin-J, INLJ; leu 99.7 4.6E-17 1.6E-21 152.9 9.2 283 12-365 59-353 (457)
49 4g8a_A TOLL-like receptor 4; l 99.7 8.5E-19 2.9E-23 172.4 -4.9 141 234-395 443-584 (635)
50 1xku_A Decorin; proteoglycan, 99.6 3.1E-17 1.1E-21 147.9 3.2 180 161-364 121-306 (330)
51 2z80_A TOLL-like receptor 2, v 99.6 9.4E-17 3.2E-21 146.1 5.4 289 14-366 28-316 (353)
52 1xku_A Decorin; proteoglycan, 99.6 5.2E-17 1.8E-21 146.4 3.2 298 17-362 31-330 (330)
53 2z80_A TOLL-like receptor 2, v 99.6 4.4E-17 1.5E-21 148.3 1.0 212 16-252 51-264 (353)
54 3un9_A NLR family member X1; l 99.6 2E-14 6.9E-19 130.9 14.8 194 160-363 71-282 (372)
55 2ft3_A Biglycan; proteoglycan, 99.6 4.7E-17 1.6E-21 146.8 -2.9 296 18-362 34-331 (332)
56 3zyj_A Leucine-rich repeat-con 99.6 6.9E-17 2.4E-21 151.5 -2.0 186 183-394 109-295 (440)
57 3zyi_A Leucine-rich repeat-con 99.6 1.1E-16 3.7E-21 150.7 -1.6 89 291-394 217-306 (452)
58 3un9_A NLR family member X1; l 99.6 4.1E-14 1.4E-18 128.8 15.5 195 134-340 71-285 (372)
59 1ogq_A PGIP-2, polygalacturona 99.5 2.7E-17 9.2E-22 146.9 -7.9 59 17-85 50-111 (313)
60 3o53_A Protein LRIM1, AGAP0063 99.5 3.6E-16 1.2E-20 140.0 -1.2 237 18-303 11-248 (317)
61 3g06_A SSPH2 (leucine-rich rep 99.5 8.6E-15 2.9E-19 141.7 8.3 267 17-374 40-307 (622)
62 3zyj_A Leucine-rich repeat-con 99.5 1.3E-15 4.6E-20 142.7 1.8 227 42-303 64-290 (440)
63 3zyi_A Leucine-rich repeat-con 99.5 2.1E-15 7.3E-20 141.8 3.0 227 42-303 75-301 (452)
64 3o53_A Protein LRIM1, AGAP0063 99.5 7.8E-16 2.7E-20 137.8 -1.3 242 13-302 30-272 (317)
65 1ozn_A Reticulon 4 receptor; N 99.5 2E-15 6.8E-20 133.1 1.0 209 134-365 31-239 (285)
66 1jl5_A Outer protein YOPM; leu 99.5 5.1E-14 1.8E-18 132.0 10.1 116 109-247 173-288 (454)
67 2ft3_A Biglycan; proteoglycan, 99.5 6.8E-16 2.3E-20 139.2 -2.6 269 16-335 53-331 (332)
68 2z66_A Variable lymphocyte rec 99.5 1.5E-16 5E-21 141.9 -7.8 258 109-393 28-289 (306)
69 1ozn_A Reticulon 4 receptor; N 99.5 1.5E-14 5.2E-19 127.4 4.9 204 42-276 32-235 (285)
70 1jl5_A Outer protein YOPM; leu 99.5 4.1E-13 1.4E-17 125.9 14.9 239 75-392 131-371 (454)
71 4g8a_A TOLL-like receptor 4; l 99.5 1.4E-15 4.8E-20 149.4 -3.0 140 207-365 441-581 (635)
72 3e4g_A ATP synthase subunit S, 99.5 8.9E-14 3E-18 110.5 7.5 112 267-385 62-173 (176)
73 4fcg_A Uncharacterized protein 99.5 2.9E-15 9.9E-20 134.6 -1.7 225 41-302 80-311 (328)
74 1ogq_A PGIP-2, polygalacturona 99.5 4.5E-17 1.5E-21 145.5 -13.8 185 182-394 121-307 (313)
75 2z66_A Variable lymphocyte rec 99.4 4.6E-15 1.6E-19 132.2 -1.6 229 16-277 27-259 (306)
76 3e4g_A ATP synthase subunit S, 99.4 1.1E-13 3.9E-18 109.9 6.5 106 236-355 61-171 (176)
77 1wwl_A Monocyte differentiatio 99.4 3.4E-14 1.2E-18 126.8 3.0 229 19-280 65-309 (312)
78 3oja_A Leucine-rich immune mol 99.4 2.3E-14 7.8E-19 135.7 1.7 214 42-303 34-248 (487)
79 2z62_A TOLL-like receptor 4, v 99.4 8.7E-15 3E-19 128.3 -1.1 207 135-365 28-238 (276)
80 3oja_A Leucine-rich immune mol 99.4 1.5E-14 5.1E-19 137.0 0.0 238 14-299 31-269 (487)
81 1wwl_A Monocyte differentiatio 99.4 4.5E-14 1.5E-18 126.0 2.6 260 12-306 38-309 (312)
82 4glp_A Monocyte differentiatio 99.4 1.2E-13 4.1E-18 123.1 4.8 136 109-247 64-208 (310)
83 4fcg_A Uncharacterized protein 99.4 1.4E-14 4.8E-19 130.1 -1.8 225 15-275 79-310 (328)
84 4glp_A Monocyte differentiatio 99.4 2.1E-13 7.2E-18 121.5 5.0 60 17-85 64-127 (310)
85 1h6u_A Internalin H; cell adhe 99.4 1.4E-12 4.7E-17 116.0 9.6 146 106-276 82-227 (308)
86 1h6u_A Internalin H; cell adhe 99.4 1.2E-12 4.2E-17 116.3 8.1 103 108-224 40-142 (308)
87 3g06_A SSPH2 (leucine-rich rep 99.3 1.1E-11 3.7E-16 120.0 14.1 244 17-345 61-304 (622)
88 2z62_A TOLL-like receptor 4, v 99.3 2.3E-13 7.8E-18 119.2 -0.4 108 159-276 122-234 (276)
89 2o6q_A Variable lymphocyte rec 99.3 3.8E-13 1.3E-17 117.4 0.7 183 161-365 37-219 (270)
90 1p9a_G Platelet glycoprotein I 99.2 1.3E-12 4.3E-17 115.2 1.5 201 133-364 8-208 (290)
91 2o6q_A Variable lymphocyte rec 99.2 7.4E-13 2.5E-17 115.5 -0.3 179 135-334 37-215 (270)
92 3rfs_A Internalin B, repeat mo 99.2 6.4E-13 2.2E-17 116.0 -1.1 42 182-224 81-122 (272)
93 1p9a_G Platelet glycoprotein I 99.2 3E-12 1E-16 112.7 3.0 182 11-224 4-185 (290)
94 4ezg_A Putative uncharacterize 99.2 1.4E-11 4.9E-16 101.9 5.5 148 135-302 44-191 (197)
95 3rfs_A Internalin B, repeat mo 99.2 9.1E-12 3.1E-16 108.7 4.2 177 41-247 40-216 (272)
96 4ezg_A Putative uncharacterize 99.2 1.2E-11 4.1E-16 102.3 3.4 150 161-363 44-193 (197)
97 2xwt_C Thyrotropin receptor; s 99.1 2.2E-12 7.6E-17 110.3 -1.3 58 18-84 32-89 (239)
98 1h6t_A Internalin B; cell adhe 99.1 5.5E-11 1.9E-15 104.7 7.4 167 41-247 45-211 (291)
99 2ra8_A Uncharacterized protein 99.1 3.5E-10 1.2E-14 102.1 12.1 88 234-334 250-340 (362)
100 2ra8_A Uncharacterized protein 99.1 2.6E-10 8.9E-15 102.9 10.9 166 182-362 168-341 (362)
101 2xwt_C Thyrotropin receptor; s 99.1 6.2E-13 2.1E-17 113.8 -6.1 179 159-361 53-236 (239)
102 1io0_A Tropomodulin; LRR prote 99.1 2.3E-09 7.9E-14 87.4 15.4 124 233-363 33-163 (185)
103 1h6t_A Internalin B; cell adhe 99.1 2E-10 6.9E-15 101.1 8.6 146 106-276 65-210 (291)
104 1m9s_A Internalin B; cell inva 99.1 1.6E-10 5.6E-15 111.6 7.7 80 159-247 129-208 (605)
105 1io0_A Tropomodulin; LRR prote 99.1 1.5E-09 5.1E-14 88.5 12.2 133 252-393 26-166 (185)
106 1m9s_A Internalin B; cell inva 99.0 2.7E-10 9.2E-15 110.1 7.4 173 13-225 39-211 (605)
107 3m19_A Variable lymphocyte rec 99.0 6.3E-11 2.2E-15 102.0 0.1 89 264-365 105-193 (251)
108 3m19_A Variable lymphocyte rec 98.9 6.4E-10 2.2E-14 95.7 5.2 178 17-223 14-191 (251)
109 2je0_A Acidic leucine-rich nuc 98.9 7.1E-10 2.4E-14 87.1 3.9 83 108-194 63-148 (149)
110 2je0_A Acidic leucine-rich nuc 98.9 1.4E-09 4.6E-14 85.5 4.8 60 184-247 40-99 (149)
111 1xeu_A Internalin C; cellular 98.8 4.8E-10 1.7E-14 97.0 1.4 166 16-247 18-183 (263)
112 1xeu_A Internalin C; cellular 98.8 2.1E-09 7.3E-14 93.0 3.7 78 160-247 40-117 (263)
113 2xot_A Amphoterin-induced prot 98.8 3.9E-10 1.3E-14 102.6 -1.7 91 291-394 111-205 (361)
114 2ell_A Acidic leucine-rich nuc 98.8 1E-09 3.5E-14 88.1 0.9 86 107-196 69-157 (168)
115 1dce_A Protein (RAB geranylger 98.7 2.9E-10 9.8E-15 109.2 -3.7 38 13-52 345-382 (567)
116 2ell_A Acidic leucine-rich nuc 98.7 8.9E-10 3.1E-14 88.5 -0.3 88 264-364 69-160 (168)
117 1pgv_A TMD-1, tropomodulin TMD 98.7 8.4E-08 2.9E-12 77.6 10.6 132 226-363 31-169 (197)
118 1pgv_A TMD-1, tropomodulin TMD 98.7 4.2E-07 1.4E-11 73.5 13.5 120 208-333 38-166 (197)
119 2o6s_A Variable lymphocyte rec 98.6 1.5E-09 5E-14 90.5 -2.8 32 323-364 147-178 (208)
120 4ay9_X Follicle-stimulating ho 98.6 1.4E-09 4.7E-14 98.4 -3.6 35 17-52 30-64 (350)
121 2v9t_B SLIT homolog 2 protein 98.6 2E-09 6.9E-14 90.5 -2.4 134 211-364 32-165 (220)
122 3sb4_A Hypothetical leucine ri 98.6 4.3E-08 1.5E-12 87.8 5.7 232 16-273 24-328 (329)
123 3cvr_A Invasion plasmid antige 98.5 4.5E-08 1.5E-12 93.7 4.6 73 136-224 121-193 (571)
124 2xot_A Amphoterin-induced prot 98.5 8.3E-09 2.8E-13 93.7 -0.6 159 135-303 39-200 (361)
125 3e6j_A Variable lymphocyte rec 98.5 6.2E-08 2.1E-12 81.9 4.8 130 42-196 40-169 (229)
126 3sb4_A Hypothetical leucine ri 98.5 4.3E-09 1.5E-13 94.3 -2.6 274 74-393 24-312 (329)
127 1a9n_A U2A', U2A'; complex (nu 98.5 5.8E-08 2E-12 78.4 4.1 111 12-146 14-124 (176)
128 3e6j_A Variable lymphocyte rec 98.5 3.2E-08 1.1E-12 83.6 2.5 111 264-388 86-198 (229)
129 2v9t_B SLIT homolog 2 protein 98.5 1.5E-08 5.1E-13 85.1 0.1 62 184-247 54-115 (220)
130 1a9n_A U2A', U2A'; complex (nu 98.5 3.5E-08 1.2E-12 79.7 2.1 13 290-302 138-150 (176)
131 2v70_A SLIT-2, SLIT homolog 2 98.5 7.9E-09 2.7E-13 86.8 -2.3 89 264-365 79-167 (220)
132 2o6s_A Variable lymphocyte rec 98.4 3E-08 1E-12 82.5 0.8 38 264-303 122-159 (208)
133 2v70_A SLIT-2, SLIT homolog 2 98.4 3.1E-08 1E-12 83.2 0.5 9 110-118 33-41 (220)
134 3cvr_A Invasion plasmid antige 98.4 3.3E-07 1.1E-11 87.8 7.7 182 18-255 60-248 (571)
135 1dce_A Protein (RAB geranylger 98.4 6.5E-09 2.2E-13 99.9 -5.3 123 187-331 442-567 (567)
136 4ay9_X Follicle-stimulating ho 98.4 5.3E-09 1.8E-13 94.6 -6.1 68 11-86 48-115 (350)
137 1ds9_A Outer arm dynein; leuci 98.3 2.3E-08 7.8E-13 82.5 -2.4 34 41-85 47-80 (198)
138 1ds9_A Outer arm dynein; leuci 98.2 1.8E-07 6.1E-12 77.1 0.8 57 266-334 93-150 (198)
139 2wfh_A SLIT homolog 2 protein 98.2 1.6E-07 5.3E-12 77.1 -0.4 109 236-364 31-139 (193)
140 2wfh_A SLIT homolog 2 protein 98.0 1.8E-06 6.1E-11 70.6 2.3 106 109-221 31-136 (193)
141 1w8a_A SLIT protein; signaling 98.0 8.1E-07 2.8E-11 72.7 -0.2 35 110-145 30-64 (192)
142 1w8a_A SLIT protein; signaling 98.0 1.6E-06 5.6E-11 70.8 1.5 127 20-173 11-138 (192)
143 2o6r_A Variable lymphocyte rec 98.0 4.1E-06 1.4E-10 67.4 3.5 128 19-173 9-136 (177)
144 2o6r_A Variable lymphocyte rec 97.9 3.6E-06 1.2E-10 67.8 2.2 39 184-223 50-88 (177)
145 4fdw_A Leucine rich hypothetic 97.9 4.3E-06 1.5E-10 76.6 2.2 196 12-247 153-356 (401)
146 4fs7_A Uncharacterized protein 97.8 4.7E-07 1.6E-11 83.2 -5.8 291 11-361 65-376 (394)
147 4fs7_A Uncharacterized protein 97.8 1.1E-06 3.8E-11 80.7 -3.5 213 131-387 158-375 (394)
148 4b8c_D Glucose-repressible alc 97.7 1E-05 3.5E-10 80.1 1.5 85 133-224 245-329 (727)
149 4fdw_A Leucine rich hypothetic 97.6 1.2E-05 4E-10 73.8 0.7 217 12-276 131-355 (401)
150 4b8c_D Glucose-repressible alc 97.6 1.4E-05 4.8E-10 79.2 1.0 111 130-250 219-329 (727)
151 3g39_A Variable lymphocyte rec 97.5 6.8E-05 2.3E-09 59.7 4.6 103 19-146 11-113 (170)
152 3g39_A Variable lymphocyte rec 97.5 1.4E-05 4.7E-10 63.9 0.4 107 265-384 29-137 (170)
153 2r9u_A Variable lymphocyte rec 97.5 7.3E-05 2.5E-09 59.8 4.6 103 19-146 14-116 (174)
154 2r9u_A Variable lymphocyte rec 97.5 1.5E-05 5.1E-10 63.9 0.1 106 265-383 32-139 (174)
155 4gt6_A Cell surface protein; l 97.5 1.4E-05 4.9E-10 73.2 -0.4 151 12-194 58-213 (394)
156 3rw6_A Nuclear RNA export fact 97.1 0.0014 4.6E-08 56.0 7.5 113 12-144 136-260 (267)
157 4gt6_A Cell surface protein; l 96.9 0.00012 4.1E-09 67.0 -0.3 289 11-362 81-389 (394)
158 2ifg_A High affinity nerve gro 96.8 0.001 3.5E-08 59.5 4.5 85 40-146 29-114 (347)
159 3rw6_A Nuclear RNA export fact 96.7 0.004 1.4E-07 53.1 7.5 61 184-247 168-231 (267)
160 2ifg_A High affinity nerve gro 96.4 0.0013 4.5E-08 58.8 2.9 36 159-195 54-89 (347)
161 4h09_A Hypothetical leucine ri 89.9 0.16 5.3E-06 45.8 2.8 124 107-245 215-342 (379)
162 3rfe_A Platelet glycoprotein I 89.7 0.096 3.3E-06 39.1 1.0 38 352-393 32-70 (130)
163 4h09_A Hypothetical leucine ri 84.0 0.52 1.8E-05 42.3 2.7 126 12-170 212-342 (379)
164 3rfe_A Platelet glycoprotein I 67.3 4.5 0.00015 29.8 3.3 34 187-221 32-65 (130)
165 2lz0_A Uncharacterized protein 27.5 27 0.00093 24.1 1.7 35 184-220 18-52 (100)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=7.5e-29 Score=242.28 Aligned_cols=342 Identities=19% Similarity=0.214 Sum_probs=239.2
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhc-CCCCCceEEecccccCCC--
Q 015585 14 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLG-SCHHLTGLSLTRCRHNHQ-- 90 (404)
Q Consensus 14 ~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~-- 90 (404)
..+++|++|+|+++.+++..+..+.+.+++|++|++.+| ..+++.++..+. .+++|++|++++|.....
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~--------~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~ 173 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC--------EGFSTDGLAAIAATCRNLKELDLRESDVDDVSG 173 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC--------EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc--------CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch
Confidence 467889999999888888888888767899999999887 345555555553 677777777776641000
Q ss_pred ----------CCc---------cccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHH-------------------
Q 015585 91 ----------GTF---------KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILL------------------- 132 (404)
Q Consensus 91 ----------~~~---------~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~------------------- 132 (404)
..+ ..+....+..+...+++|+.|++++|..+ .++..++.
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH--HHHHHHHhcCCcceEcccccccCccch
Confidence 000 12445566666666788888888775221 11222222
Q ss_pred -----------------------------------hCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHH
Q 015585 133 -----------------------------------SCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSE 177 (404)
Q Consensus 133 -----------------------------------~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 177 (404)
.+++|++|+++++. ++...+..+...+++|+.|++.+| +.+.
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~ 328 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDA 328 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHH
T ss_pred hhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHH
Confidence 33555555555555 555556555666677777777665 4455
Q ss_pred HHHHhh-CCCCCCEEec--------cCCCCCChHHHHhhh-CCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeec---
Q 015585 178 TVKKLA-SSRNLEVLDL--------GGCKSIADTCLRSIS-CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLR--- 244 (404)
Q Consensus 178 ~~~~l~-~~~~L~~L~l--------~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~--- 244 (404)
++..+. .+++|++|++ ..|..+++..+..+. .+++|++|.+..+.+++.++..++..+++|++|++.
T Consensus 329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 555555 4777777777 334566666666665 378888887777788888777777778888888887
Q ss_pred --CCCCCc----HHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCC
Q 015585 245 --GCKRVT----DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP 318 (404)
Q Consensus 245 --~~~~l~----~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 318 (404)
+|..++ +.++..+. ..+++|+.|++++ .+++.++..+...+++|+.|++++|. +++.++..++.
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~----~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~--- 478 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIV----EHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLS--- 478 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHH----HHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHH---
T ss_pred CCCcccccCCchhhHHHHHH----hhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHh---
Confidence 455676 56666665 4677888888866 78888888887778889999998885 88888888866
Q ss_pred CcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccEEEec
Q 015585 319 DQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLD 386 (404)
Q Consensus 319 ~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~~~ 386 (404)
++++|+.|++++|+ +++.++..+. ..+++|+.|++++|.+ ..+.++.++..+|.+++.+.
T Consensus 479 ---~~~~L~~L~L~~n~-~~~~~~~~~~-~~l~~L~~L~l~~~~~---~~~~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 479 ---GCDSLRKLEIRDCP-FGDKALLANA-SKLETMRSLWMSSCSV---SFGACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp ---HCTTCCEEEEESCS-CCHHHHHHTG-GGGGGSSEEEEESSCC---BHHHHHHHHHHCTTEEEEEE
T ss_pred ---cCCCcCEEECcCCC-CcHHHHHHHH-HhCCCCCEEeeeCCCC---CHHHHHHHHHhCCCCEEEEe
Confidence 68899999999975 4777776554 3578999999999987 57778888888899985443
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=3.4e-28 Score=237.59 Aligned_cols=328 Identities=21% Similarity=0.254 Sum_probs=254.7
Q ss_pred CCCCCcEEeccCC-CCChHHHHHHHhhCCCccEEeecCCCCCC--ccccc-------------------ccchhhhhhh-
Q 015585 15 SSFNLRSLSLVLD-VITDELLITITASLPFLVELDLEDRPNTE--PLARL-------------------DLTSSGLQSL- 71 (404)
Q Consensus 15 ~~~~L~~L~L~~~-~~~~~~~~~i~~~~~~L~~L~l~~~~~~~--~~~~~-------------------~~~~~~~~~l- 71 (404)
.+++|++|+++++ .+++..+..+...+++|++|++++|.... +.+.. .++...+..+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 6899999999975 77777788888779999999999875211 11100 1222333333
Q ss_pred cCCCCCceEEecccccCC-----------CC---------------------------------CccccChhhHHHHHhc
Q 015585 72 GSCHHLTGLSLTRCRHNH-----------QG---------------------------------TFKRVNDMGMFLLSEG 107 (404)
Q Consensus 72 ~~~~~L~~L~l~~~~~~~-----------~~---------------------------------~~~~~~~~~l~~l~~~ 107 (404)
..+++|++|++++|.... .. ++.......+..+...
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 467888888888762100 00 1122223334444446
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEc--------cCCCCCCHHHH
Q 015585 108 CKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRL--------LWCRLITSETV 179 (404)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l--------~~~~~~~~~~~ 179 (404)
+++|++|++++|. +++.++..++..+++|+.|++.++ +++..+..+...+++|++|++ .++..+++.++
T Consensus 288 ~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 288 CSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 7899999999976 888888888899999999999988 667778888878999999999 44566888888
Q ss_pred HHhh-CCCCCCEEeccCCCCCChHHHHhhh-CCCCCCEEEcc--C----CccC----HHHHHHHHhcCCCcCEEeecCCC
Q 015585 180 KKLA-SSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLT--G----ADIT----DSGLSILAQGNLPIMNLCLRGCK 247 (404)
Q Consensus 180 ~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~l~----~~~l~~l~~~~~~L~~L~l~~~~ 247 (404)
..+. .+++|++|.+. |+.+++..+..++ .+++|+.|++. + +.++ +.++..+...+++|++|++++
T Consensus 365 ~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-- 441 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-- 441 (594)
T ss_dssp HHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--
T ss_pred HHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--
Confidence 8887 59999999665 4688888888776 58999999998 3 4677 778888888899999999976
Q ss_pred CCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCc
Q 015585 248 RVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLR 327 (404)
Q Consensus 248 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~ 327 (404)
.+++.++..+. ..+++|+.|++++| .+++.++..+...+++|+.|++++|+ +++.++..++. .+++|+
T Consensus 442 ~l~~~~~~~l~----~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~------~l~~L~ 509 (594)
T 2p1m_B 442 LLTDKVFEYIG----TYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANAS------KLETMR 509 (594)
T ss_dssp SCCHHHHHHHH----HHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGG------GGGGSS
T ss_pred cccHHHHHHHH----HhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHH------hCCCCC
Confidence 58898888887 45789999999997 68999998888889999999999997 69988887776 789999
Q ss_pred EEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585 328 RLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR 362 (404)
Q Consensus 328 ~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 362 (404)
.|++++|+ ++..++..+. ..+|.|+...+..+.
T Consensus 510 ~L~l~~~~-~~~~~~~~l~-~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 510 SLWMSSCS-VSFGACKLLG-QKMPKLNVEVIDERG 542 (594)
T ss_dssp EEEEESSC-CBHHHHHHHH-HHCTTEEEEEECSSS
T ss_pred EEeeeCCC-CCHHHHHHHH-HhCCCCEEEEecCCC
Confidence 99999985 5888888875 358999887777554
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.3e-27 Score=233.45 Aligned_cols=344 Identities=19% Similarity=0.223 Sum_probs=199.8
Q ss_pred CCCCCcEEeccCCCCChHHHHHHHhhCCC-ccEEeecCCCCCCcccccccchhhhhhh-cCCCCCceEEecccccCCCCC
Q 015585 15 SSFNLRSLSLVLDVITDELLITITASLPF-LVELDLEDRPNTEPLARLDLTSSGLQSL-GSCHHLTGLSLTRCRHNHQGT 92 (404)
Q Consensus 15 ~~~~L~~L~L~~~~~~~~~~~~i~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~ 92 (404)
.+++|++|+|+++.+++..+..+...+++ |++|++.+| ..++..++..+ ..+++|++|++++|..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~--------~~~~~~~l~~~~~~~~~L~~L~L~~~~~----- 176 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC--------SGFTTDGLLSIVTHCRKIKTLLMEESSF----- 176 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC--------EEEEHHHHHHHHHHCTTCSEEECTTCEE-----
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC--------CCcCHHHHHHHHhhCCCCCEEECccccc-----
Confidence 67888888888877887777777665666 888888887 33455555554 4788888888887631
Q ss_pred ccccChhhHHHHHhcCCCCcEEEcCCCCC--CCHHHHHHHHHhCCCCcEEEecCCCCCC---------------------
Q 015585 93 FKRVNDMGMFLLSEGCKGLESVRLGGFSK--VSDAGFAAILLSCHSLKKFEVRSASFLS--------------------- 149 (404)
Q Consensus 93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~--------------------- 149 (404)
.......+..+...+++|++|+++++.. +....+..+...+++|+.|+++++....
T Consensus 177 -~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 177 -SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE 255 (592)
T ss_dssp -ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCC
T ss_pred -cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccccccc
Confidence 1122223455555666777776665321 2355566666666666666666653100
Q ss_pred --------------------------HHHHHHHHcCCCCccEEEccCCCCCCHHHHHH-hhCCCCCCEEeccCCCCCChH
Q 015585 150 --------------------------DLAFHDLTGVPCALVEVRLLWCRLITSETVKK-LASSRNLEVLDLGGCKSIADT 202 (404)
Q Consensus 150 --------------------------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~ 202 (404)
...+..+...+++|++|++++|. +.+..+.. +..+++|++|++.. .+.+.
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~ 332 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDR 332 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHH
T ss_pred ccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHH
Confidence 11112222334556666666655 45444432 33556666666552 34444
Q ss_pred HHHhh-hCCCCCCEEEcc-----------CCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccE
Q 015585 203 CLRSI-SCLRKLTALNLT-----------GADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTT 270 (404)
Q Consensus 203 ~~~~l-~~~~~L~~L~l~-----------~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~ 270 (404)
.+..+ ..+++|++|++. .+.+++.++..++..+++|++|.+. +..+++.++..+. ..+++|++
T Consensus 333 ~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~----~~~~~L~~ 407 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIG----TYLKNLCD 407 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHH----HHCCSCCE
T ss_pred HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHH----hhCCCCcE
Confidence 44433 345666666666 2356666666655556666666663 3335665555554 33556666
Q ss_pred EecC---CCCCCCH----HHHHHHHHhCCCCceEeecCCC-CCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHH
Q 015585 271 LDLG---YMPGISD----DGILTIAAAGIGIIDLCVRSCF-YVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 342 (404)
Q Consensus 271 L~l~---~~~~l~~----~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 342 (404)
|+++ .++.+++ .++..+...+++|+.|++++|. .+++.++..++. .+++|+.|++++| .+++.++
T Consensus 408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~------~~~~L~~L~L~~n-~l~~~~~ 480 (592)
T 3ogk_B 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ------YSPNVRWMLLGYV-GESDEGL 480 (592)
T ss_dssp EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH------SCTTCCEEEECSC-CSSHHHH
T ss_pred EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH------hCccceEeeccCC-CCCHHHH
Confidence 6665 2334443 3455555556666666665543 366666666665 5666777777664 4666555
Q ss_pred HhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEecccccc
Q 015585 343 RWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIG 391 (404)
Q Consensus 343 ~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~ 391 (404)
..+. ..+++|++|++++|.+ ++..+..+...+|+++ +++.+|.+.
T Consensus 481 ~~~~-~~~~~L~~L~l~~n~l---~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 481 MEFS-RGCPNLQKLEMRGCCF---SERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHH-TCCTTCCEEEEESCCC---BHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHH-hcCcccCeeeccCCCC---cHHHHHHHHHhcCccCeeECcCCcCC
Confidence 5443 2466777777777765 4555566666667776 777776654
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=8.5e-28 Score=234.67 Aligned_cols=333 Identities=17% Similarity=0.222 Sum_probs=244.1
Q ss_pred CcEEeccCC-CCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhh---hhh-hcCCCCCceEEecccccCCCCCc
Q 015585 19 LRSLSLVLD-VITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSG---LQS-LGSCHHLTGLSLTRCRHNHQGTF 93 (404)
Q Consensus 19 L~~L~L~~~-~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~~-l~~~~~L~~L~l~~~~~~~~~~~ 93 (404)
|++|+|+++ .+.+..+..+...+++|++|++++|. +++.+ +.. ...+++|+.|+++++. +
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~---------~~~~~~~~l~~~~~~~~~L~~L~L~~n~------~ 204 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS---------FSEKDGKWLHELAQHNTSLEVLNFYMTE------F 204 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE---------EECCCSHHHHHHHHHCCCCCEEECTTCC------C
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc---------ccCcchhHHHHHHhcCCCccEEEeeccC------C
Confidence 777777753 35555666666667777777777762 22111 111 2345555555554431 1
Q ss_pred cccChhhHHHHHhcCCCCcEEEcCCCCC-----------------------------------------------CCHHH
Q 015585 94 KRVNDMGMFLLSEGCKGLESVRLGGFSK-----------------------------------------------VSDAG 126 (404)
Q Consensus 94 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~-----------------------------------------------~~~~~ 126 (404)
..+....+..+...+++|+.|+++++.. .....
T Consensus 205 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 284 (592)
T 3ogk_B 205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284 (592)
T ss_dssp SSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTT
T ss_pred CccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhH
Confidence 1223344444444455555555544311 11222
Q ss_pred HHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhh-CCCCCCEEeccC----------
Q 015585 127 FAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGG---------- 195 (404)
Q Consensus 127 ~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~---------- 195 (404)
+..+...+++|++|+++++. ++...+..+...+++|+.|++.+ .+.+.++..+. .+++|++|+++.
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred HHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 34445667899999999997 88888877788999999999984 46777777765 689999999995
Q ss_pred CCCCChHHHHhhh-CCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecC---CCCCcH----HHHHHHHhhcCCCCCC
Q 015585 196 CKSIADTCLRSIS-CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRG---CKRVTD----KGISHLLCVGGTISQS 267 (404)
Q Consensus 196 ~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~---~~~l~~----~~~~~l~~~~~~~~~~ 267 (404)
|+.+++..+..+. .+++|++|++..+.+++..+..++..+++|++|++.+ +..+++ .++..+. ..+++
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~----~~~~~ 437 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL----IGCKK 437 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH----HHCTT
T ss_pred cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH----HhCCC
Confidence 7888888777754 5899999999888999999999998899999999973 445665 4666666 46899
Q ss_pred ccEEecCCCC-CCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhh
Q 015585 268 LTTLDLGYMP-GISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK 346 (404)
Q Consensus 268 L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~ 346 (404)
|++|++++|. .+++.++..+...+++|+.|++++|. +++.++..+.. ++++|+.|++++|+ ++..++..+.
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~------~~~~L~~L~l~~n~-l~~~~~~~~~ 509 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSR------GCPNLQKLEMRGCC-FSERAIAAAV 509 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHT------CCTTCCEEEEESCC-CBHHHHHHHH
T ss_pred CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHh------cCcccCeeeccCCC-CcHHHHHHHH
Confidence 9999998764 48888998888889999999999995 99999888887 79999999999986 8887777664
Q ss_pred cCCCCcccEEecCCccccCCChHHHHHHHhcCCccEEEe
Q 015585 347 RPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCL 385 (404)
Q Consensus 347 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~~ 385 (404)
..+++|++|++++|.++ ...+..+++.+|.+.+.+
T Consensus 510 -~~l~~L~~L~ls~n~it---~~~~~~l~~~~p~l~~~~ 544 (592)
T 3ogk_B 510 -TKLPSLRYLWVQGYRAS---MTGQDLMQMARPYWNIEL 544 (592)
T ss_dssp -HHCSSCCEEEEESCBCC---TTCTTGGGGCCTTEEEEE
T ss_pred -HhcCccCeeECcCCcCC---HHHHHHHHHhCCCcEEEE
Confidence 25899999999999984 456677888999988543
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.1e-26 Score=216.78 Aligned_cols=224 Identities=21% Similarity=0.260 Sum_probs=102.9
Q ss_pred HHhCCCCcEEEecCCCCCCHHHHHHHHc----CCCCccEEEccCCCCCCHHHHH----HhhCCCCCCEEeccCCCCCChH
Q 015585 131 LLSCHSLKKFEVRSASFLSDLAFHDLTG----VPCALVEVRLLWCRLITSETVK----KLASSRNLEVLDLGGCKSIADT 202 (404)
Q Consensus 131 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~----~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~ 202 (404)
+..+++|++|+++++. ++......+.. ..++|+.|++++|. +++.++. .+..+++|++|+++++ .+++.
T Consensus 166 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~ 242 (461)
T 1z7x_W 166 LRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDV 242 (461)
T ss_dssp HHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHH
T ss_pred HhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChH
Confidence 3344555555555553 33333322221 23355555555543 3332221 2224555555555553 44443
Q ss_pred HHHhhh-----CCCCCCEEEccCCccCHHHHHHHHh---cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecC
Q 015585 203 CLRSIS-----CLRKLTALNLTGADITDSGLSILAQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLG 274 (404)
Q Consensus 203 ~~~~l~-----~~~~L~~L~l~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~ 274 (404)
++..++ .+++|++|++++|.+++.+...++. .+++|++|+++++. +++.+...+........++|++|+++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcC
Confidence 333221 2455555555555555554333322 35556666665554 44444433331111223456666665
Q ss_pred CCCCCCHHHHH---HHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhh--cCC
Q 015585 275 YMPGISDDGIL---TIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK--RPS 349 (404)
Q Consensus 275 ~~~~l~~~~~~---~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~--~~~ 349 (404)
+| .+++.+.. .....+++|++|++++| .+++.+...++..+.. .+++|++|++++| .+++.+...+. ...
T Consensus 322 ~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~--~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 322 SC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQ--PGSVLRVLWLADC-DVSDSSCSSLAATLLA 396 (461)
T ss_dssp TS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTS--TTCCCCEEECTTS-CCCHHHHHHHHHHHHH
T ss_pred CC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcC--CCCceEEEECCCC-CCChhhHHHHHHHHHh
Confidence 54 34443222 22233566666666665 3555555555442220 1445666666664 55553333322 012
Q ss_pred CCcccEEecCCccc
Q 015585 350 FRGLHWLGIGQTRL 363 (404)
Q Consensus 350 ~~~L~~L~l~~~~l 363 (404)
+++|++|++++|.+
T Consensus 397 ~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 397 NHSLRELDLSNNCL 410 (461)
T ss_dssp CCCCCEEECCSSSC
T ss_pred CCCccEEECCCCCC
Confidence 55666666666655
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.5e-26 Score=219.00 Aligned_cols=351 Identities=20% Similarity=0.225 Sum_probs=234.7
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHH---HhhCCCccEEeecCCCCCCcccccccchhhhhhhc-CCC----CCceEEecc
Q 015585 13 YYSSFNLRSLSLVLDVITDELLITI---TASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLG-SCH----HLTGLSLTR 84 (404)
Q Consensus 13 ~~~~~~L~~L~L~~~~~~~~~~~~i---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~----~L~~L~l~~ 84 (404)
+..+++|++|+++++.+.+.....+ ...+++|++|++++| .+++.++..+. .++ +|++|++++
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n---------~l~~~~~~~l~~~l~~~~~~L~~L~L~~ 94 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN---------ELGDVGVHCVLQGLQTPSCKIQKLSLQN 94 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC---------CCHHHHHHHHHHTTCSTTCCCCEEECTT
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC---------cCChHHHHHHHHHHhhCCCceeEEEccC
Confidence 5567788888888777776543333 334678888888875 35555554443 333 688888877
Q ss_pred cccCCCCCccccChh---hHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHh----CCCCcEEEecCCCCCCHHH---HH
Q 015585 85 CRHNHQGTFKRVNDM---GMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLS----CHSLKKFEVRSASFLSDLA---FH 154 (404)
Q Consensus 85 ~~~~~~~~~~~~~~~---~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~---l~ 154 (404)
|. +.+. .+......+++|++|+++++ .+++.+...+... .++|++|+++++. ++... +.
T Consensus 95 n~---------i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~ 163 (461)
T 1z7x_W 95 CC---------LTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLA 163 (461)
T ss_dssp SC---------CBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH
T ss_pred CC---------CCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHH
Confidence 53 4443 33444456788888888884 5766666655543 3468888888885 44433 34
Q ss_pred HHHcCCCCccEEEccCCCCCCHHHHHHhh-----CCCCCCEEeccCCCCCChHHH----HhhhCCCCCCEEEccCCccCH
Q 015585 155 DLTGVPCALVEVRLLWCRLITSETVKKLA-----SSRNLEVLDLGGCKSIADTCL----RSISCLRKLTALNLTGADITD 225 (404)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~ 225 (404)
.....+++|++|+++++. +.+.++..++ ..++|++|++++| .++.... ..+..+++|++|++++|.+++
T Consensus 164 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 444567888888888865 6666665554 2568888888885 5665443 334567888888888888887
Q ss_pred HHHHHHHh----cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHh----CCCCceE
Q 015585 226 SGLSILAQ----GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA----GIGIIDL 297 (404)
Q Consensus 226 ~~l~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L 297 (404)
.++..++. .+++|++|++++|. +++.+...+... -..+++|++|+++++ .+++.+...+... .++|++|
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRV-LRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHH-HHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHH-HhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceee
Confidence 77666554 46788888888885 777664433310 024678888888886 6777766665543 2588888
Q ss_pred eecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhc---CCCCcccEEecCCccccCCChHHHHHH
Q 015585 298 CVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR---PSFRGLHWLGIGQTRLASKGNPVITEI 374 (404)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~ 374 (404)
++++|. +++.+...++..+. .+++|+.|++++| .+++.+...+.. ...++|++|++++|.++..+...+...
T Consensus 319 ~L~~n~-l~~~~~~~l~~~l~---~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 319 WVKSCS-FTAACCSHFSSVLA---QNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp ECTTSC-CBGGGHHHHHHHHH---HCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred EcCCCC-CchHHHHHHHHHHh---hCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 888885 77666555554333 5789999999995 788776665531 236799999999998843222233333
Q ss_pred HhcCCccE-EEecccccccc
Q 015585 375 HNERPWLT-FCLDGCEIGCH 393 (404)
Q Consensus 375 ~~~~~~l~-l~~~~~~~~~~ 393 (404)
...+|.++ +++.+|++...
T Consensus 394 l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHCCCCCEEECCSSSCCHH
T ss_pred HHhCCCccEEECCCCCCCHH
Confidence 45688888 99999988754
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=9.8e-22 Score=178.76 Aligned_cols=308 Identities=19% Similarity=0.141 Sum_probs=218.9
Q ss_pred ccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCC
Q 015585 11 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQ 90 (404)
Q Consensus 11 ~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 90 (404)
..+..+++|++|+++++.+... +.+ ..+++|++|++++|. ++.. ..+..+++|++|+++++..
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~--~~~-~~~~~L~~L~l~~n~---------i~~~--~~~~~l~~L~~L~L~~n~i--- 100 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASI--QGI-EYLTNLEYLNLNGNQ---------ITDI--SPLSNLVKLTNLYIGTNKI--- 100 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCC--TTG-GGCTTCCEEECCSSC---------CCCC--GGGTTCTTCCEEECCSSCC---
T ss_pred ccchhcccccEEEEeCCccccc--hhh-hhcCCccEEEccCCc---------cccc--hhhhcCCcCCEEEccCCcc---
Confidence 3456789999999998777642 233 458999999999973 3322 2278899999999988642
Q ss_pred CCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccC
Q 015585 91 GTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLW 170 (404)
Q Consensus 91 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 170 (404)
..+. ....+++|++|+++++ .+.... . +..+++|+.|+++++....... . ...+++|+.|++++
T Consensus 101 ---~~~~------~~~~l~~L~~L~l~~n-~i~~~~--~-~~~l~~L~~L~l~~n~~~~~~~--~-~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 101 ---TDIS------ALQNLTNLRELYLNED-NISDIS--P-LANLTKMYSLNLGANHNLSDLS--P-LSNMTGLNYLTVTE 164 (347)
T ss_dssp ---CCCG------GGTTCTTCSEEECTTS-CCCCCG--G-GTTCTTCCEEECTTCTTCCCCG--G-GTTCTTCCEEECCS
T ss_pred ---cCch------HHcCCCcCCEEECcCC-cccCch--h-hccCCceeEEECCCCCCccccc--c-hhhCCCCcEEEecC
Confidence 2221 1367899999999985 343321 1 5678999999999985444321 1 45789999999998
Q ss_pred CCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCc
Q 015585 171 CRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVT 250 (404)
Q Consensus 171 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~ 250 (404)
+..... ..+..+++|++|+++++ .+... ..+..+++|+.|++.++.+++... ...+++|++|++++|. ++
T Consensus 165 ~~~~~~---~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~-l~ 234 (347)
T 4fmz_A 165 SKVKDV---TPIANLTDLYSLSLNYN-QIEDI--SPLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNK-IT 234 (347)
T ss_dssp SCCCCC---GGGGGCTTCSEEECTTS-CCCCC--GGGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSC-CC
T ss_pred CCcCCc---hhhccCCCCCEEEccCC-ccccc--ccccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCc-cC
Confidence 763322 22678899999999986 44432 236788999999999997765432 3468999999999887 44
Q ss_pred HHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEe
Q 015585 251 DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLD 330 (404)
Q Consensus 251 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~ 330 (404)
.... . ..+++|++|+++++ .++.. . ....+++|+.|++++|. +++. ..+. .+++|+.|+
T Consensus 235 ~~~~---~----~~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~l~~n~-l~~~--~~~~-------~l~~L~~L~ 293 (347)
T 4fmz_A 235 DLSP---L----ANLSQLTWLEIGTN-QISDI--N-AVKDLTKLKMLNVGSNQ-ISDI--SVLN-------NLSQLNSLF 293 (347)
T ss_dssp CCGG---G----TTCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSSC-CCCC--GGGG-------GCTTCSEEE
T ss_pred CCcc---h----hcCCCCCEEECCCC-ccCCC--h-hHhcCCCcCEEEccCCc-cCCC--hhhc-------CCCCCCEEE
Confidence 3322 2 47889999999986 55542 1 12457899999999985 6543 2233 589999999
Q ss_pred ccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEecccccc
Q 015585 331 LCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIG 391 (404)
Q Consensus 331 l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~ 391 (404)
+++| .++......+. .+++|++|++++|.++.... ...+|.++ +++.+|++.
T Consensus 294 L~~n-~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 294 LNNN-QLGNEDMEVIG--GLTNLTTLFLSQNHITDIRP------LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSS-CCCGGGHHHHH--TCTTCSEEECCSSSCCCCGG------GGGCTTCSEESSSCC---
T ss_pred CcCC-cCCCcChhHhh--ccccCCEEEccCCccccccC------hhhhhccceeehhhhccc
Confidence 9996 67776666665 48999999999999875422 45788887 999998763
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=6.5e-22 Score=179.96 Aligned_cols=287 Identities=17% Similarity=0.150 Sum_probs=183.7
Q ss_pred ccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCC
Q 015585 11 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQ 90 (404)
Q Consensus 11 ~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 90 (404)
..+..+++|++|+++++.+.+... ...+++|++|++++|.. +. +..+..+++|++|+++++.
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i---------~~--~~~~~~l~~L~~L~l~~n~---- 121 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKI---------TD--ISALQNLTNLRELYLNEDN---- 121 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC---------CC--CGGGTTCTTCSEEECTTSC----
T ss_pred hhhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcc---------cC--chHHcCCCcCCEEECcCCc----
Confidence 346778888888888777664322 34578888888888632 22 2346778888888887753
Q ss_pred CCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccC
Q 015585 91 GTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLW 170 (404)
Q Consensus 91 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 170 (404)
+..+.. ...+++|+.|+++++....... . +..+++|+.|+++++....... ...+++|+.|++++
T Consensus 122 --i~~~~~------~~~l~~L~~L~l~~n~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 122 --ISDISP------LANLTKMYSLNLGANHNLSDLS--P-LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNY 186 (347)
T ss_dssp --CCCCGG------GTTCTTCCEEECTTCTTCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTT
T ss_pred --ccCchh------hccCCceeEEECCCCCCccccc--c-hhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccC
Confidence 112211 3567888888888764443321 1 4567888888888875322222 34678888888887
Q ss_pred CCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCc
Q 015585 171 CRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVT 250 (404)
Q Consensus 171 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~ 250 (404)
+.. .+ +..+..+++|+.|+++++ .+..... +..+++|++|++++|.+++... ...+++|++|++++|. ++
T Consensus 187 n~l-~~--~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~ 256 (347)
T 4fmz_A 187 NQI-ED--ISPLASLTSLHYFTAYVN-QITDITP--VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQ-IS 256 (347)
T ss_dssp SCC-CC--CGGGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CC
T ss_pred Ccc-cc--cccccCCCccceeecccC-CCCCCch--hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCc-cC
Confidence 653 22 122567788888888774 4443222 5677888888888887665332 3457888888888775 44
Q ss_pred HHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEe
Q 015585 251 DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLD 330 (404)
Q Consensus 251 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~ 330 (404)
.. ..+ ..+++|++|+++++ .+++.. ....+++|+.|++++|. +++.....+.. +++|+.|+
T Consensus 257 ~~--~~~-----~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~~~~l~~-------l~~L~~L~ 317 (347)
T 4fmz_A 257 DI--NAV-----KDLTKLKMLNVGSN-QISDIS---VLNNLSQLNSLFLNNNQ-LGNEDMEVIGG-------LTNLTTLF 317 (347)
T ss_dssp CC--GGG-----TTCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSC-CCGGGHHHHHT-------CTTCSEEE
T ss_pred CC--hhH-----hcCCCcCEEEccCC-ccCCCh---hhcCCCCCCEEECcCCc-CCCcChhHhhc-------cccCCEEE
Confidence 32 122 36778888888886 454421 13457888888888884 66666666664 78888888
Q ss_pred ccCCCCCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585 331 LCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 364 (404)
Q Consensus 331 l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~ 364 (404)
+++|+ ++.... +. .+++|++|++++|.++
T Consensus 318 L~~n~-l~~~~~--~~--~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 318 LSQNH-ITDIRP--LA--SLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSS-CCCCGG--GG--GCTTCSEESSSCC---
T ss_pred ccCCc-cccccC--hh--hhhccceeehhhhccc
Confidence 88863 543222 32 4788888888888763
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2.3e-23 Score=196.67 Aligned_cols=333 Identities=15% Similarity=0.128 Sum_probs=204.5
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 96 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 96 (404)
++|++|+|+++.+.......+. .+++|++|++++|... .......+..+++|++|+++++. +..+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~--------~~i~~~~~~~l~~L~~L~Ls~n~------l~~~ 94 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPG--------LVIRNNTFRGLSSLIILKLDYNQ------FLQL 94 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCSTT--------CEECTTTTTTCTTCCEEECTTCT------TCEE
T ss_pred CccCEEEecCCccCcCChhHhc-cCccccEEECcCCccc--------ceECcccccccccCCEEeCCCCc------cCcc
Confidence 6789999998888764444443 4889999999987321 11223346778899999998863 2222
Q ss_pred ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHH-HHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585 97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFA-AILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 175 (404)
Q Consensus 97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 175 (404)
....+ ..+++|++|+++++ .++..... ..+..+++|+.|+++++. ++...-..+...+++|+.|+++++. +.
T Consensus 95 ~~~~~----~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~ 167 (455)
T 3v47_A 95 ETGAF----NGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK-VK 167 (455)
T ss_dssp CTTTT----TTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC-BS
T ss_pred Chhhc----cCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc-cc
Confidence 22222 46788999999885 44432221 225567889999998885 2221111124467889999998865 32
Q ss_pred HHHHHHhhC--CCCCCEEeccCCCCCChHH--------HHhhhCCCCCCEEEccCCccCHHHHHHHHhc-----------
Q 015585 176 SETVKKLAS--SRNLEVLDLGGCKSIADTC--------LRSISCLRKLTALNLTGADITDSGLSILAQG----------- 234 (404)
Q Consensus 176 ~~~~~~l~~--~~~L~~L~l~~~~~~~~~~--------~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~----------- 234 (404)
......+.. ..+|+.|+++++ .+.... ...+..+++|++|++++|.+++.....+...
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSI-TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTC-BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred ccChhhhhccccccccccccccC-cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 222222222 256667776664 222211 1112244667777777776665544444321
Q ss_pred ---------------------------CCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHH
Q 015585 235 ---------------------------NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTI 287 (404)
Q Consensus 235 ---------------------------~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 287 (404)
.++|+.|+++++. +.......+ ..+++|++|+++++ .++......+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~Ls~n-~l~~~~~~~~ 319 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVF-----SHFTDLEQLTLAQN-EINKIDDNAF 319 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTT-----TTCTTCCEEECTTS-CCCEECTTTT
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccchhhc-----ccCCCCCEEECCCC-cccccChhHh
Confidence 2456666666654 332211111 35778999999886 5543221122
Q ss_pred HHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCC
Q 015585 288 AAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKG 367 (404)
Q Consensus 288 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~ 367 (404)
..+++|+.|++++|. ++......+. .+++|+.|++++| .++......+. .+++|++|++++|.++...
T Consensus 320 -~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 320 -WGLTHLLKLNLSQNF-LGSIDSRMFE-------NLDKLEVLDLSYN-HIRALGDQSFL--GLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp -TTCTTCCEEECCSSC-CCEECGGGGT-------TCTTCCEEECCSS-CCCEECTTTTT--TCTTCCEEECCSSCCSCCC
T ss_pred -cCcccCCEEECCCCc-cCCcChhHhc-------CcccCCEEECCCC-cccccChhhcc--ccccccEEECCCCccccCC
Confidence 346899999999885 5533222333 5889999999995 66654444443 4899999999999987653
Q ss_pred hHHHHHHHhcCCccE-EEeccccccccCC
Q 015585 368 NPVITEIHNERPWLT-FCLDGCEIGCHDG 395 (404)
Q Consensus 368 ~~~~~~~~~~~~~l~-l~~~~~~~~~~~~ 395 (404)
.+ ....+++++ +++.+|++.|...
T Consensus 388 ~~----~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 388 DG----IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TT----TTTTCTTCCEEECCSSCBCCCTT
T ss_pred Hh----HhccCCcccEEEccCCCcccCCC
Confidence 32 225678888 9999999999853
No 10
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=6.4e-20 Score=166.01 Aligned_cols=250 Identities=16% Similarity=0.225 Sum_probs=187.7
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHH-HhhCCCCC
Q 015585 110 GLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVK-KLASSRNL 188 (404)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~L 188 (404)
.++.++++++ .+....+..+.. ++++.|++.++. +.... .. ...+++|++|+++++. +.+..+. .+..+++|
T Consensus 48 ~~~~l~l~~~-~~~~~~~~~~~~--~~l~~L~l~~n~-l~~~~-~~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGK-NLHPDVTGRLLS--QGVIAFRCPRSF-MDQPL-AE-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTC-BCCHHHHHHHHH--TTCSEEECTTCE-ECSCC-CS-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCC
T ss_pred hheeeccccc-cCCHHHHHhhhh--ccceEEEcCCcc-ccccc-hh-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCC
Confidence 4677777763 455443333221 678888877763 11100 00 2356889999998875 6665443 45578999
Q ss_pred CEEeccCCCCCChHHHHhhhCCCCCCEEEccCC-ccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCC-
Q 015585 189 EVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQ- 266 (404)
Q Consensus 189 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~- 266 (404)
++|++++| .+++.....++.+++|++|++++| .+++.++..+...+++|++|++++|..+++.++.... ..++
T Consensus 121 ~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~l~~ 195 (336)
T 2ast_B 121 QNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV----AHVSE 195 (336)
T ss_dssp SEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH----HHSCT
T ss_pred CEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH----Hhccc
Confidence 99999886 677777778888899999999998 7888778877778899999999998558877666655 4678
Q ss_pred CccEEecCCCC-CCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhh
Q 015585 267 SLTTLDLGYMP-GISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 345 (404)
Q Consensus 267 ~L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l 345 (404)
+|++|+++++. .+++..+......+++|+.|++++|..+++.....+.. +++|+.|++++|..+++.++..+
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-------l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-------LNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-------CTTCCEEECTTCTTCCGGGGGGG
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC-------CCCCCEeeCCCCCCCCHHHHHHH
Confidence 99999999976 67877777777789999999999997678777776664 89999999999888888777666
Q ss_pred hcCCCCcccEEecCCccccCCChHHHHHHHhcCCccEEE
Q 015585 346 KRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFC 384 (404)
Q Consensus 346 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~ 384 (404)
. .+++|+.|++++| + .++.+..+.+.+|.+++.
T Consensus 269 ~--~~~~L~~L~l~~~-i---~~~~~~~l~~~l~~L~l~ 301 (336)
T 2ast_B 269 G--EIPTLKTLQVFGI-V---PDGTLQLLKEALPHLQIN 301 (336)
T ss_dssp G--GCTTCCEEECTTS-S---CTTCHHHHHHHSTTSEES
T ss_pred h--cCCCCCEEeccCc-c---CHHHHHHHHhhCcceEEe
Confidence 5 4899999999999 4 566777887788888853
No 11
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=4.4e-20 Score=167.09 Aligned_cols=218 Identities=21% Similarity=0.232 Sum_probs=136.7
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhh-hhcCCCCCceEEecccccCCCCCccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQ-SLGSCHHLTGLSLTRCRHNHQGTFKR 95 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~ 95 (404)
++++.|+++++.+...... + ..+++|++|++++| .++...+. .+..+++|++|++++|.
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~---------~l~~~~~~~~~~~~~~L~~L~L~~~~--------- 129 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNS---------VIEVSTLHGILSQCSKLQNLSLEGLR--------- 129 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTC---------EECHHHHHHHHTTBCCCSEEECTTCB---------
T ss_pred ccceEEEcCCccccccchh-h-ccCCCCCEEEccCC---------CcCHHHHHHHHhhCCCCCEEeCcCcc---------
Confidence 6677777776554432211 1 23677777777775 34444333 34567777777776642
Q ss_pred cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCC-CccEEEccCCC-C
Q 015585 96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPC-ALVEVRLLWCR-L 173 (404)
Q Consensus 96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~-~ 173 (404)
+.+.....+ ..+++|++|++++|..+++.++..++..+++|++|+++++..++...+......++ +|+.|++++|. .
T Consensus 130 l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 130 LSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp CCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred cCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence 444444444 34677777777776567766666667777777777777774466666666666677 77777777764 3
Q ss_pred CCHHHHHH-hhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC-ccCHHHHHHHHhcCCCcCEEeecCCCCCcH
Q 015585 174 ITSETVKK-LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTD 251 (404)
Q Consensus 174 ~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~ 251 (404)
+++..+.. +..+++|++|++++|..+++..+..++.+++|++|++++| .+++.++..+. .+++|++|++++| +++
T Consensus 209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~--i~~ 285 (336)
T 2ast_B 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPD 285 (336)
T ss_dssp SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCT
T ss_pred CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc--cCH
Confidence 55444433 3367777777777764466666666667777777777776 55555554443 3677777777776 666
Q ss_pred HHHHHHH
Q 015585 252 KGISHLL 258 (404)
Q Consensus 252 ~~~~~l~ 258 (404)
.++..+.
T Consensus 286 ~~~~~l~ 292 (336)
T 2ast_B 286 GTLQLLK 292 (336)
T ss_dssp TCHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=9.6e-23 Score=199.45 Aligned_cols=261 Identities=14% Similarity=0.095 Sum_probs=157.6
Q ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHH--HHHhhC
Q 015585 107 GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSET--VKKLAS 184 (404)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~l~~ 184 (404)
.+++|++|+++++ .+.... ...+..+++|+.|+++++...... .......+++|+.|+++++. +.... ...+..
T Consensus 299 ~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~ 374 (606)
T 3t6q_A 299 GLSTLKKLVLSAN-KFENLC-QISASNFPSLTHLSIKGNTKRLEL-GTGCLENLENLRELDLSHDD-IETSDCCNLQLRN 374 (606)
T ss_dssp SCTTCCEEECTTC-CCSBGG-GGCGGGCTTCSEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTT
T ss_pred ccccCCEEECccC-CcCcCc-hhhhhccCcCCEEECCCCCccccc-chhhhhccCcCCEEECCCCc-cccccCcchhccc
Confidence 4556666666664 222211 112345566666666666321000 00112356677777777654 22211 223456
Q ss_pred CCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCC
Q 015585 185 SRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTI 264 (404)
Q Consensus 185 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 264 (404)
+++|++|+++++ .+.......+..+++|++|++++|.++..........+++|++|++++|. +.......+ ..
T Consensus 375 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-----~~ 447 (606)
T 3t6q_A 375 LSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLF-----DG 447 (606)
T ss_dssp CTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTT-----TT
T ss_pred CCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHHHH-----hC
Confidence 777777777774 44444444556677888888887765533222223356788888888776 433222222 35
Q ss_pred CCCccEEecCCCCCCCHHHH--HHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHH
Q 015585 265 SQSLTTLDLGYMPGISDDGI--LTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 342 (404)
Q Consensus 265 ~~~L~~L~l~~~~~l~~~~~--~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 342 (404)
+++|++|+++++ .++...+ ......+++|+.|++++|. ++......+. .+++|+.|++++| .++....
T Consensus 448 l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~ 517 (606)
T 3t6q_A 448 LPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFT-------SLKMMNHVDLSHN-RLTSSSI 517 (606)
T ss_dssp CTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECCSS-CCCGGGG
T ss_pred CCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCc-cCccChhhhc-------cccCCCEEECCCC-ccCcCCh
Confidence 788999999886 4433111 0123457889999999885 5533222233 5889999999995 7777666
Q ss_pred HhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccccCC
Q 015585 343 RWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHDG 395 (404)
Q Consensus 343 ~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~~ 395 (404)
..+. .+++| .|++++|.+++.....+..+ ++++ +++.+|++.|++.
T Consensus 518 ~~l~--~l~~L-~L~L~~N~l~~~~~~~~~~l----~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 518 EALS--HLKGI-YLNLASNHISIILPSLLPIL----SQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGT--TCCSC-EEECCSSCCCCCCGGGHHHH----HTSSEEECTTCCEECSGG
T ss_pred hHhC--ccccc-EEECcCCcccccCHhhcccC----CCCCEEeCCCCCccccCC
Confidence 6665 58899 99999999987655544444 6666 9999999999754
No 13
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=3.9e-19 Score=163.93 Aligned_cols=253 Identities=17% Similarity=0.177 Sum_probs=144.5
Q ss_pred cCCCCcEEEcCCCCCCCHHHHHHH---HHhCCCCcEEEecCCC--CCC---HHH---HHHHHcCCCCccEEEccCCCCCC
Q 015585 107 GCKGLESVRLGGFSKVSDAGFAAI---LLSCHSLKKFEVRSAS--FLS---DLA---FHDLTGVPCALVEVRLLWCRLIT 175 (404)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~--~~~---~~~---l~~~~~~~~~L~~L~l~~~~~~~ 175 (404)
.+++|+.|+++++ .++..+...+ +..+++|+.|+++++. .++ ... +......+++|+.|+++++. +.
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FG 107 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CC
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CC
Confidence 4455555555553 4444443332 2244556666665542 111 111 12223455666666666654 33
Q ss_pred HHH----HHHhhCCCCCCEEeccCCCCCChHHHHhhh----CC---------CCCCEEEccCCccCHHHHHHHHh---cC
Q 015585 176 SET----VKKLASSRNLEVLDLGGCKSIADTCLRSIS----CL---------RKLTALNLTGADITDSGLSILAQ---GN 235 (404)
Q Consensus 176 ~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~----~~---------~~L~~L~l~~~~l~~~~l~~l~~---~~ 235 (404)
+.+ ...+..+++|++|++++| .++......++ .+ ++|++|++++|.+++.++..++. .+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 322 223445677777777764 45544333332 22 67777777777777655554332 56
Q ss_pred CCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH---HhCCCCceEeecCCCCCCHHHHHH
Q 015585 236 LPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYVTDASVEA 312 (404)
Q Consensus 236 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~ 312 (404)
++|++|++++|. +++.++..+.......+++|++|+++++ .+++.+...+. ..+++|+.|++++|. +++.+...
T Consensus 187 ~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~ 263 (386)
T 2ca6_A 187 RLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAA 263 (386)
T ss_dssp TTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHH
T ss_pred CCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHH
Confidence 777777777775 6666554443211135677888888775 56655544433 346788888888874 77777666
Q ss_pred HHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhc---CCCCcccEEecCCccccCCC
Q 015585 313 LARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR---PSFRGLHWLGIGQTRLASKG 367 (404)
Q Consensus 313 l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~l~~~~ 367 (404)
++..+... .+++|+.|++++| .++..++..+.. ..+++|++|++++|.++...
T Consensus 264 l~~~l~~~-~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKL-ENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTC-SSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhc-cCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 66543200 2678888888884 677654443321 23688888888888886543
No 14
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.6e-19 Score=166.48 Aligned_cols=256 Identities=19% Similarity=0.152 Sum_probs=189.7
Q ss_pred HHHHhCCCCcEEEecCCCCCCHHHHHHH---HcCCCCccEEEccCCC--CCC---HHHHHH----hhCCCCCCEEeccCC
Q 015585 129 AILLSCHSLKKFEVRSASFLSDLAFHDL---TGVPCALVEVRLLWCR--LIT---SETVKK----LASSRNLEVLDLGGC 196 (404)
Q Consensus 129 ~l~~~~~~L~~L~l~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~--~~~---~~~~~~----l~~~~~L~~L~l~~~ 196 (404)
..+..+++|+.|+++++. ++......+ ...+++|+.|+++++. .+. ..++.. +..+++|++|+++++
T Consensus 26 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 346678999999999995 666554443 4578999999999873 222 234433 347899999999995
Q ss_pred CCCChHH----HHhhhCCCCCCEEEccCCccCHHHHHHHHhc---C---------CCcCEEeecCCCCCcHHHHHHHHhh
Q 015585 197 KSIADTC----LRSISCLRKLTALNLTGADITDSGLSILAQG---N---------LPIMNLCLRGCKRVTDKGISHLLCV 260 (404)
Q Consensus 197 ~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~---~---------~~L~~L~l~~~~~l~~~~~~~l~~~ 260 (404)
.++..+ ...+..+++|++|++++|.+++.+...++.. + ++|++|++++|. +++.++..+..
T Consensus 105 -~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~- 181 (386)
T 2ca6_A 105 -AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAK- 181 (386)
T ss_dssp -CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHH-
T ss_pred -cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHH-
Confidence 676643 3355789999999999999987766655542 3 899999999987 77555553220
Q ss_pred cCCCCCCccEEecCCCCCCCHHHHHHHHH----hCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCC
Q 015585 261 GGTISQSLTTLDLGYMPGISDDGILTIAA----AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG 336 (404)
Q Consensus 261 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 336 (404)
.-..+++|++|+++++ .+++.++..+.. .+++|+.|++++|. +++.+...++..+. .+++|+.|++++| .
T Consensus 182 ~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~---~~~~L~~L~L~~n-~ 255 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALK---SWPNLRELGLNDC-L 255 (386)
T ss_dssp HHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGG---GCTTCCEEECTTC-C
T ss_pred HHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHc---cCCCcCEEECCCC-C
Confidence 0035789999999997 889887666554 68999999999995 99888877776655 7899999999996 6
Q ss_pred CCHHHHHhhhc----CCCCcccEEecCCccccCCChHHH-HHHHhcCCccE-EEeccccccccC
Q 015585 337 LSVDSLRWVKR----PSFRGLHWLGIGQTRLASKGNPVI-TEIHNERPWLT-FCLDGCEIGCHD 394 (404)
Q Consensus 337 i~~~~~~~l~~----~~~~~L~~L~l~~~~l~~~~~~~~-~~~~~~~~~l~-l~~~~~~~~~~~ 394 (404)
++..+...+.. ..+++|++|++++|.++..+...+ ..+...+|+++ +++.+|++....
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 88876554432 238999999999999853212222 23335679998 999999988654
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=1.7e-20 Score=177.31 Aligned_cols=309 Identities=19% Similarity=0.240 Sum_probs=177.4
Q ss_pred cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585 12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG 91 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 91 (404)
.+..+++|++|+++++.+..... ...+++|++|++++|.. ... ..++.+++|++|+++++..
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l---------~~~--~~~~~l~~L~~L~L~~n~l---- 124 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQI---------ADI--TPLANLTNLTGLTLFNNQI---- 124 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC---------CCC--GGGTTCTTCCEEECCSSCC----
T ss_pred chhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCcc---------ccC--hhhcCCCCCCEEECCCCCC----
Confidence 46677888888888776664332 33477888888877632 211 1255666666776666421
Q ss_pred CccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHH-------------------HHHHHHhCCCCcEEEecCCCCCCHHH
Q 015585 92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAG-------------------FAAILLSCHSLKKFEVRSASFLSDLA 152 (404)
Q Consensus 92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-------------------~~~l~~~~~~L~~L~l~~~~~~~~~~ 152 (404)
..+.. ...+++|++|+++++. +.... +.. +..+++|+.|+++++.. +..
T Consensus 125 --~~~~~------~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~- 192 (466)
T 1o6v_A 125 --TDIDP------LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKV-SDI- 192 (466)
T ss_dssp --CCCGG------GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSCC-CCC-
T ss_pred --CCChH------HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCcC-CCC-
Confidence 11111 2345555555555431 11100 001 33445666666665542 111
Q ss_pred HHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHH
Q 015585 153 FHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILA 232 (404)
Q Consensus 153 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~ 232 (404)
. ....+++|+.|+++++.. .. +..+..+++|++|+++++ .+.. +..+..+++|+.|++++|.+++... .
T Consensus 193 -~-~l~~l~~L~~L~l~~n~l-~~--~~~~~~l~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~---~ 261 (466)
T 1o6v_A 193 -S-VLAKLTNLESLIATNNQI-SD--ITPLGILTNLDELSLNGN-QLKD--IGTLASLTNLTDLDLANNQISNLAP---L 261 (466)
T ss_dssp -G-GGGGCTTCSEEECCSSCC-CC--CGGGGGCTTCCEEECCSS-CCCC--CGGGGGCTTCSEEECCSSCCCCCGG---G
T ss_pred -h-hhccCCCCCEEEecCCcc-cc--cccccccCCCCEEECCCC-Cccc--chhhhcCCCCCEEECCCCccccchh---h
Confidence 1 123556666666666542 21 111445666777776664 3332 2345566777777777776554321 3
Q ss_pred hcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHH
Q 015585 233 QGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEA 312 (404)
Q Consensus 233 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 312 (404)
..+++|++|++++|. +..... . ..+++|+.|+++++ .++.... ...+++|+.|++++|. +++...
T Consensus 262 ~~l~~L~~L~l~~n~-l~~~~~---~----~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-- 326 (466)
T 1o6v_A 262 SGLTKLTELKLGANQ-ISNISP---L----AGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDISP-- 326 (466)
T ss_dssp TTCTTCSEEECCSSC-CCCCGG---G----TTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCGG--
T ss_pred hcCCCCCEEECCCCc-cCcccc---c----cCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCchh--
Confidence 356777777777765 333211 2 35678888888875 4443211 2457888888888885 543221
Q ss_pred HHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEecccccc
Q 015585 313 LARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIG 391 (404)
Q Consensus 313 l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~ 391 (404)
+. .+++|+.|++++| .++.. ..+. .+++|+.|++++|.+++... ...+|.++ +++.+|.+.
T Consensus 327 ~~-------~l~~L~~L~l~~n-~l~~~--~~l~--~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 327 VS-------SLTKLQRLFFYNN-KVSDV--SSLA--NLTNINWLSAGHNQISDLTP------LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp GG-------GCTTCCEEECCSS-CCCCC--GGGT--TCTTCCEEECCSSCCCBCGG------GTTCTTCCEEECCCEEEE
T ss_pred hc-------cCccCCEeECCCC-ccCCc--hhhc--cCCCCCEEeCCCCccCccch------hhcCCCCCEEeccCCccc
Confidence 22 4788889988886 55543 2333 58899999999998865421 36778887 999888887
Q ss_pred ccC
Q 015585 392 CHD 394 (404)
Q Consensus 392 ~~~ 394 (404)
..+
T Consensus 389 ~~p 391 (466)
T 1o6v_A 389 NAP 391 (466)
T ss_dssp CCC
T ss_pred CCc
Confidence 643
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=8.7e-23 Score=199.75 Aligned_cols=139 Identities=15% Similarity=0.128 Sum_probs=83.3
Q ss_pred cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHH
Q 015585 234 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEAL 313 (404)
Q Consensus 234 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 313 (404)
.+++|++|++++|. +.......+ ..+++|++|+++++ .++..........+++|+.|++++|. ++......+
T Consensus 422 ~l~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 493 (606)
T 3vq2_A 422 SLEKLLYLDISYTN-TKIDFDGIF-----LGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVF 493 (606)
T ss_dssp TCTTCCEEECTTSC-CEECCTTTT-----TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred ccccCCEEECcCCC-CCccchhhh-----cCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc-CCccChhhh
Confidence 34556666665554 222111111 24567777777765 33321111112346788888888874 543222222
Q ss_pred HhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCC-ccE-EEecccccc
Q 015585 314 ARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERP-WLT-FCLDGCEIG 391 (404)
Q Consensus 314 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-~l~-l~~~~~~~~ 391 (404)
. .+++|+.|++++| .++......+. .+++|++|++++|.++..... + ...| +++ +++.+|++.
T Consensus 494 ~-------~l~~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~p~~----~-~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 494 D-------TLHRLQLLNMSHN-NLLFLDSSHYN--QLYSLSTLDCSFNRIETSKGI----L-QHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp T-------TCTTCCEEECCSS-CCSCEEGGGTT--TCTTCCEEECTTSCCCCEESC----G-GGSCTTCCEEECCSCCCC
T ss_pred c-------ccccCCEEECCCC-cCCCcCHHHcc--CCCcCCEEECCCCcCcccCHh----H-hhhcccCcEEEccCCCcc
Confidence 2 5888999999885 66654444443 588999999999998754322 3 4555 577 999999999
Q ss_pred ccCC
Q 015585 392 CHDG 395 (404)
Q Consensus 392 ~~~~ 395 (404)
|+..
T Consensus 559 c~c~ 562 (606)
T 3vq2_A 559 CICE 562 (606)
T ss_dssp CSST
T ss_pred cCCc
Confidence 9743
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=1.8e-21 Score=183.71 Aligned_cols=330 Identities=11% Similarity=0.035 Sum_probs=202.5
Q ss_pred ccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCC
Q 015585 11 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQ 90 (404)
Q Consensus 11 ~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 90 (404)
..+..+++|++|+++++.+...........+++|++|++++|. ++......++.+++|++|+++++.
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~L~~n~---- 114 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ---------FLQLETGAFNGLANLEVLTLTQCN---- 114 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT---------TCEECTTTTTTCTTCCEEECTTSC----
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc---------cCccChhhccCcccCCEEeCCCCC----
Confidence 3478889999999998766532222222348999999999973 444344557788899999998863
Q ss_pred CCccccChhhHHH-HHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCC--CHHHHHHH-----------
Q 015585 91 GTFKRVNDMGMFL-LSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFL--SDLAFHDL----------- 156 (404)
Q Consensus 91 ~~~~~~~~~~l~~-l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~~~l~~~----------- 156 (404)
+....+.. ....+++|++|+++++ .++......++..+++|+.|+++++... ....+..+
T Consensus 115 -----l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 115 -----LDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp -----CBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred -----CCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 33222211 1356788999998885 3433222223566788899988887421 11111111
Q ss_pred -------------------HcCCCCccEEEccCCCCCCHHHHHHhh---CCCCCCEEeccCCCCCCh---------HHHH
Q 015585 157 -------------------TGVPCALVEVRLLWCRLITSETVKKLA---SSRNLEVLDLGGCKSIAD---------TCLR 205 (404)
Q Consensus 157 -------------------~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~---------~~~~ 205 (404)
....++|+.|+++++. +.......+. ..++|+.|+++++..... ....
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 1123567777777654 4443333333 346677777765421110 0000
Q ss_pred hhh--CCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHH
Q 015585 206 SIS--CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDG 283 (404)
Q Consensus 206 ~l~--~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~ 283 (404)
.+. ..++|+.|++++|.++...... ...+++|++|++++|. +.......+ ..+++|++|+++++ .++...
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~ 339 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQNE-INKIDDNAF-----WGLTHLLKLNLSQN-FLGSID 339 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTT-TTTCTTCCEEECTTSC-CCEECTTTT-----TTCTTCCEEECCSS-CCCEEC
T ss_pred ccccccccCceEEEecCccccccchhh-cccCCCCCEEECCCCc-ccccChhHh-----cCcccCCEEECCCC-ccCCcC
Confidence 111 2478999999999876532222 2357899999999987 554322222 36789999999996 554432
Q ss_pred HHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccc
Q 015585 284 ILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRL 363 (404)
Q Consensus 284 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l 363 (404)
... ...+++|+.|++++|. ++......+. .+++|+.|++++| .++......+. .+++|+.|++++|++
T Consensus 340 ~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 340 SRM-FENLDKLEVLDLSYNH-IRALGDQSFL-------GLPNLKELALDTN-QLKSVPDGIFD--RLTSLQKIWLHTNPW 407 (455)
T ss_dssp GGG-GTTCTTCCEEECCSSC-CCEECTTTTT-------TCTTCCEEECCSS-CCSCCCTTTTT--TCTTCCEEECCSSCB
T ss_pred hhH-hcCcccCCEEECCCCc-ccccChhhcc-------ccccccEEECCCC-ccccCCHhHhc--cCCcccEEEccCCCc
Confidence 222 2357999999999995 6543222333 5899999999995 66654333333 589999999999999
Q ss_pred cCCC--hHHHHHHHhcCCc
Q 015585 364 ASKG--NPVITEIHNERPW 380 (404)
Q Consensus 364 ~~~~--~~~~~~~~~~~~~ 380 (404)
+... ...+..+.+..+.
T Consensus 408 ~~~~~~~~~l~~~l~~~~~ 426 (455)
T 3v47_A 408 DCSCPRIDYLSRWLNKNSQ 426 (455)
T ss_dssp CCCTTTTHHHHHHHHHTTT
T ss_pred ccCCCcchHHHHHHHhCcc
Confidence 7642 2344444443333
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=3.3e-21 Score=185.00 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=63.7
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 96 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 96 (404)
++|++|+++++.+.......+. .+++|++|++++|. ++......++.+++|++|+++++. +..+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~N~------l~~l 84 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDIL-SLSKLRILIISHNR---------IQYLDISVFKFNQELEYLDLSHNK------LVKI 84 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHT-TCTTCCEEECCSSC---------CCEEEGGGGTTCTTCCEEECCSSC------CCEE
T ss_pred ccccEEECCCCcccccChhhcc-ccccccEEecCCCc---------cCCcChHHhhcccCCCEEecCCCc------eeec
Confidence 7888899988777755444454 48888999888863 443334456777888888887753 1222
Q ss_pred ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 015585 97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS 146 (404)
Q Consensus 97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 146 (404)
... .+++|++|+++++ .++...+...+..+++|++|+++++.
T Consensus 85 p~~-------~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 85 SCH-------PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp ECC-------CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred Ccc-------ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcc
Confidence 211 4566777777664 22221111124455666666666654
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=1.7e-22 Score=202.44 Aligned_cols=336 Identities=18% Similarity=0.155 Sum_probs=174.1
Q ss_pred cccCCCCCcEEeccCCCCChHHHH--HHHhhCCCccEEeecCCCCCCcccccccchhhhhhh-cCCCCCceEEecccccC
Q 015585 12 SYYSSFNLRSLSLVLDVITDELLI--TITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSL-GSCHHLTGLSLTRCRHN 88 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~~~~~~~~~~--~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~ 88 (404)
.+..+++|++|+|+++.+....+. .+. .+++|++|++++|. +.......+ ..+++|++|+++++.
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~---------l~~~~~~~~~~~l~~L~~L~Ls~n~-- 162 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFLNVSSNT---------LDFPGKVSGGLKLNSLEVLDLSANS-- 162 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGG-GCTTCCEEECCSSE---------EECCSSCCSCCCCTTCSEEECCSSC--
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHHHh-CCCCCCEEECcCCc---------cCCcCCHHHhccCCCCCEEECCCCc--
Confidence 577888999999998777644333 443 48899999998862 222222222 577888888887753
Q ss_pred CCCCccccChhhHHH--HHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEE
Q 015585 89 HQGTFKRVNDMGMFL--LSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEV 166 (404)
Q Consensus 89 ~~~~~~~~~~~~l~~--l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 166 (404)
+....... ....+++|++|+++++.-..... ...+++|++|+++++...... .. ...+++|+.|
T Consensus 163 -------l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~--~~-l~~l~~L~~L 228 (768)
T 3rgz_A 163 -------ISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGI--PF-LGDCSALQHL 228 (768)
T ss_dssp -------CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCC--CB-CTTCCSCCEE
T ss_pred -------cCCcCChhhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCC--cc-cccCCCCCEE
Confidence 22222211 13567788888887753211111 145678888888777532111 11 3466778888
Q ss_pred EccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCC
Q 015585 167 RLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGC 246 (404)
Q Consensus 167 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 246 (404)
+++++. +.......+..+++|++|++++| .+..... . ..+++|++|++++|.+++.....+...+++|++|++++|
T Consensus 229 ~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~-~-~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 229 DISGNK-LSGDFSRAISTCTELKLLNISSN-QFVGPIP-P-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304 (768)
T ss_dssp ECCSSC-CCSCHHHHTTTCSSCCEEECCSS-CCEESCC-C-CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred ECcCCc-CCCcccHHHhcCCCCCEEECCCC-cccCccC-c-cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence 887765 44444556667777888887775 3322111 1 145566666666654432211112222355555555555
Q ss_pred CCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCH---HHHHHHHhhC------
Q 015585 247 KRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTD---ASVEALARKQ------ 317 (404)
Q Consensus 247 ~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~------ 317 (404)
. +.......+ ..+++|++|+++++ .++..........+++|++|++++|. ++. ..+..+...+
T Consensus 305 ~-l~~~~p~~~-----~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 305 H-FYGAVPPFF-----GSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp E-EEECCCGGG-----GGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECC
T ss_pred c-CCCccchHH-----hcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEcc
Confidence 4 221111111 13445555555554 22100000111234555555555543 211 1111111000
Q ss_pred ---------CCcc--cCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEe
Q 015585 318 ---------PDQE--KSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCL 385 (404)
Q Consensus 318 ---------~~~~--~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~ 385 (404)
+... .+++|+.|++++| .++......+. .+++|++|++++|.+++..... ...+++++ +++
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L 449 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLS--NCSELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKL 449 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGGGG--GCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEEC
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCC-ccccccCHHHh--cCCCCCEEECcCCcccCcccHH----HhcCCCCCEEEC
Confidence 0000 1456777777774 33322222332 3778888888888876432222 24567777 888
Q ss_pred ccccccc
Q 015585 386 DGCEIGC 392 (404)
Q Consensus 386 ~~~~~~~ 392 (404)
.+|.+..
T Consensus 450 ~~n~l~~ 456 (768)
T 3rgz_A 450 WLNMLEG 456 (768)
T ss_dssp CSSCCCS
T ss_pred CCCcccC
Confidence 8887763
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=2.8e-20 Score=179.84 Aligned_cols=59 Identities=20% Similarity=0.098 Sum_probs=30.0
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEeccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC 85 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 85 (404)
++|++|+++++.++......+ ..+++|++|++++|. ++......++.+++|++|+++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~---------i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDL-RACANLQVLILKSSR---------INTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTT-SSCTTCCEEECTTSC---------CCEECTTTTTTCTTCCEEECTTS
T ss_pred CCccEEECcCCccCccChhhh-hcCCcccEEECCCCC---------cCccChhhccccccCCEEECCCC
Confidence 456666666655553322223 235666666666652 22222233455556666666553
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=8.5e-22 Score=191.35 Aligned_cols=164 Identities=16% Similarity=0.090 Sum_probs=96.5
Q ss_pred hCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHH
Q 015585 208 SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTI 287 (404)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 287 (404)
..+++|++|++++|.++..... ...+++|++|++++|. +......... ..+++|++|+++++ .+..... ..
T Consensus 370 ~~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~----~~l~~L~~L~l~~n-~l~~~~~-~~ 440 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSN-LKQMSEFSVF----LSLRNLIYLDISHT-HTRVAFN-GI 440 (570)
T ss_dssp HTCSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSE-EESCTTSCTT----TTCTTCCEEECTTS-CCEECCT-TT
T ss_pred cccCccCEEECCCCcccccccc--ccccCCCCEEEccCCc-cccccchhhh----hcCCCCCEEeCcCC-cccccch-hh
Confidence 3445555555555433221100 1235556666665554 2221110111 35678888888876 3322111 11
Q ss_pred HHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCC
Q 015585 288 AAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKG 367 (404)
Q Consensus 288 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~ 367 (404)
...+++|+.|++++|. +++.. +...+. .+++|+.|++++| .++......+. .+++|++|++++|.++...
T Consensus 441 ~~~l~~L~~L~l~~n~-l~~~~---~p~~~~---~l~~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~ 510 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNS-FQENF---LPDIFT---ELRNLTFLDLSQC-QLEQLSPTAFN--SLSSLQVLNMASNQLKSVP 510 (570)
T ss_dssp TTTCTTCCEEECTTCE-EGGGE---ECSCCT---TCTTCCEEECTTS-CCCEECTTTTT--TCTTCCEEECCSSCCSCCC
T ss_pred hhcCCcCcEEECcCCc-Ccccc---chhhhh---cccCCCEEECCCC-ccccCChhhhh--cccCCCEEeCCCCcCCCCC
Confidence 2356889999998885 43211 111122 6899999999996 66654444443 5899999999999987653
Q ss_pred hHHHHHHHhcCCccE-EEeccccccccC
Q 015585 368 NPVITEIHNERPWLT-FCLDGCEIGCHD 394 (404)
Q Consensus 368 ~~~~~~~~~~~~~l~-l~~~~~~~~~~~ 394 (404)
.. ....+++++ +++.+|++.|..
T Consensus 511 ~~----~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 511 DG----IFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp TT----TTTTCTTCCEEECCSSCBCCCT
T ss_pred HH----HhhcccCCcEEEecCCcccCCC
Confidence 32 225678888 999999999984
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=8.5e-22 Score=192.74 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=26.4
Q ss_pred cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCC
Q 015585 12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRP 53 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~ 53 (404)
.+..+++|++|+|+++.+.......+. .+++|++|++++|.
T Consensus 76 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~ 116 (606)
T 3t6q_A 76 TFQSQHRLDTLVLTANPLIFMAETALS-GPKALKHLFFIQTG 116 (606)
T ss_dssp TTTTCTTCCEEECTTCCCSEECTTTTS-SCTTCCEEECTTSC
T ss_pred hccCccccCeeeCCCCcccccChhhhc-ccccccEeeccccC
Confidence 466777888888877766543333333 36777777777763
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=1.8e-21 Score=184.80 Aligned_cols=302 Identities=20% Similarity=0.148 Sum_probs=146.8
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 96 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 96 (404)
++++.|+|+++.+.......+. .+++|++|++++| .++......+..+++|++|+++++. +..+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n---------~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~ 95 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNEN---------IVSAVEPGAFNNLFNLRTLGLRSNR------LKLI 95 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTS---------CCCEECTTTTTTCTTCCEEECCSSC------CCSC
T ss_pred CCCcEEECCCCccceECHhHcc-CCCCCCEEECCCC---------ccCEeChhhhhCCccCCEEECCCCc------CCcc
Confidence 5677777777666643333333 3677777777775 2333333445667777777776642 1222
Q ss_pred ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585 97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 176 (404)
Q Consensus 97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 176 (404)
....+ ..+++|++|+++++ .+.... ...+..+++|+.|+++++. +.... ...+..+++|+.|+++++. +..
T Consensus 96 ~~~~~----~~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~ 166 (477)
T 2id5_A 96 PLGVF----TGLSNLTKLDISEN-KIVILL-DYMFQDLYNLKSLEVGDND-LVYIS-HRAFSGLNSLEQLTLEKCN-LTS 166 (477)
T ss_dssp CTTSS----TTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEEECCTT-CCEEC-TTSSTTCTTCCEEEEESCC-CSS
T ss_pred Ccccc----cCCCCCCEEECCCC-ccccCC-hhHccccccCCEEECCCCc-cceeC-hhhccCCCCCCEEECCCCc-Ccc
Confidence 22111 34567777777764 222110 1113455677777776663 21110 0112245666666666653 332
Q ss_pred HHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHH
Q 015585 177 ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH 256 (404)
Q Consensus 177 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 256 (404)
.....+..+++|+.|+++++ .+.......+..+++|+.|+++++........... ...+|++|++++|. ++......
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~-l~~~~~~~ 243 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCN-LTAVPYLA 243 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSC-CCSCCHHH
T ss_pred cChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCc-ccccCHHH
Confidence 22334456666666666663 44433333445566666666666532211111111 12356666666554 33322222
Q ss_pred HHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCC
Q 015585 257 LLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG 336 (404)
Q Consensus 257 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 336 (404)
+ ..+++|++|+++++ .++......+ ..+++|+.|++++|. ++......+. .+++|+.|++++| .
T Consensus 244 ~-----~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~-------~l~~L~~L~L~~N-~ 307 (477)
T 2id5_A 244 V-----RHLVYLRFLNLSYN-PISTIEGSML-HELLRLQEIQLVGGQ-LAVVEPYAFR-------GLNYLRVLNVSGN-Q 307 (477)
T ss_dssp H-----TTCTTCCEEECCSS-CCCEECTTSC-TTCTTCCEEECCSSC-CSEECTTTBT-------TCTTCCEEECCSS-C
T ss_pred h-----cCccccCeeECCCC-cCCccChhhc-cccccCCEEECCCCc-cceECHHHhc-------CcccCCEEECCCC-c
Confidence 2 24556666666654 3332111111 234566666666653 3322111122 3566666666663 4
Q ss_pred CCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585 337 LSVDSLRWVKRPSFRGLHWLGIGQTRLA 364 (404)
Q Consensus 337 i~~~~~~~l~~~~~~~L~~L~l~~~~l~ 364 (404)
++......+. .+++|+.|++++|++.
T Consensus 308 l~~~~~~~~~--~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 308 LTTLEESVFH--SVGNLETLILDSNPLA 333 (477)
T ss_dssp CSCCCGGGBS--CGGGCCEEECCSSCEE
T ss_pred CceeCHhHcC--CCcccCEEEccCCCcc
Confidence 4432222222 3556666666666654
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=2e-21 Score=184.46 Aligned_cols=322 Identities=15% Similarity=0.108 Sum_probs=218.2
Q ss_pred cEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChh
Q 015585 20 RSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDM 99 (404)
Q Consensus 20 ~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 99 (404)
+.++.+++.+... +.. -.+++++|++++| .++......+..+++|++|+++++. +..+...
T Consensus 14 ~~v~c~~~~l~~i-p~~---~~~~l~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~n~------i~~~~~~ 74 (477)
T 2id5_A 14 RAVLCHRKRFVAV-PEG---IPTETRLLDLGKN---------RIKTLNQDEFASFPHLEELELNENI------VSAVEPG 74 (477)
T ss_dssp TEEECCSCCCSSC-CSC---CCTTCSEEECCSS---------CCCEECTTTTTTCTTCCEEECTTSC------CCEECTT
T ss_pred CEEEeCCCCcCcC-CCC---CCCCCcEEECCCC---------ccceECHhHccCCCCCCEEECCCCc------cCEeChh
Confidence 4566665544421 111 1358999999997 3444444567889999999998863 2223222
Q ss_pred hHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHH
Q 015585 100 GMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETV 179 (404)
Q Consensus 100 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 179 (404)
.+ ..+++|+.|+++++ .++... ...+..+++|+.|+++++.. ... .......+++|+.|+++++. +.....
T Consensus 75 ~~----~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~ 145 (477)
T 2id5_A 75 AF----NNLFNLRTLGLRSN-RLKLIP-LGVFTGLSNLTKLDISENKI-VIL-LDYMFQDLYNLKSLEVGDND-LVYISH 145 (477)
T ss_dssp TT----TTCTTCCEEECCSS-CCCSCC-TTSSTTCTTCCEEECTTSCC-CEE-CTTTTTTCTTCCEEEECCTT-CCEECT
T ss_pred hh----hCCccCCEEECCCC-cCCccC-cccccCCCCCCEEECCCCcc-ccC-ChhHccccccCCEEECCCCc-cceeCh
Confidence 22 56899999999985 343221 11245679999999999853 211 11223578999999999875 433333
Q ss_pred HHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHh
Q 015585 180 KKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLC 259 (404)
Q Consensus 180 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 259 (404)
..+..+++|++|+++++ .+.......+..+++|+.|++.++.+....... ...+++|++|++++|..+.... ....
T Consensus 146 ~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~- 221 (477)
T 2id5_A 146 RAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMT-PNCL- 221 (477)
T ss_dssp TSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC-SCSCTTCCEEEEECCTTCCEEC-TTTT-
T ss_pred hhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhh-cccCcccceeeCCCCccccccC-cccc-
Confidence 34668899999999995 666555566788999999999998776432211 2257899999999887443321 1111
Q ss_pred hcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCH
Q 015585 260 VGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV 339 (404)
Q Consensus 260 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~ 339 (404)
...+|++|+++++ .++...... ...+++|+.|++++|. ++......+. .+++|+.|+++++ .++.
T Consensus 222 ----~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~L~~n-~l~~ 286 (477)
T 2id5_A 222 ----YGLNLTSLSITHC-NLTAVPYLA-VRHLVYLRFLNLSYNP-ISTIEGSMLH-------ELLRLQEIQLVGG-QLAV 286 (477)
T ss_dssp ----TTCCCSEEEEESS-CCCSCCHHH-HTTCTTCCEEECCSSC-CCEECTTSCT-------TCTTCCEEECCSS-CCSE
T ss_pred ----cCccccEEECcCC-cccccCHHH-hcCccccCeeECCCCc-CCccChhhcc-------ccccCCEEECCCC-ccce
Confidence 3458999999996 565433222 3468999999999995 5533222222 5899999999995 6665
Q ss_pred HHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccccC
Q 015585 340 DSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD 394 (404)
Q Consensus 340 ~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~ 394 (404)
.....+. .+++|+.|++++|.++...... ...+++++ +++.+|++.|+.
T Consensus 287 ~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 287 VEPYAFR--GLNYLRVLNVSGNQLTTLEESV----FHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp ECTTTBT--TCTTCCEEECCSSCCSCCCGGG----BSCGGGCCEEECCSSCEECSG
T ss_pred ECHHHhc--CcccCCEEECCCCcCceeCHhH----cCCCcccCEEEccCCCccCcc
Confidence 4444443 5899999999999997654332 24568888 999999999884
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=5.4e-21 Score=189.58 Aligned_cols=338 Identities=16% Similarity=0.062 Sum_probs=179.2
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC---Cc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG---TF 93 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~ 93 (404)
++|++|+++++.+.......+ ..+++|++|++++|. +.......+..+++|+.|+++++...... .+
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNN---------IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCC---------BSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred CCCCEEECCCCCcCccCcccc-cCcccccEeeCCCCc---------cCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence 348899998877765433333 347889999988863 33222334455666666666543210000 00
Q ss_pred cccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecC----------------------------C
Q 015585 94 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRS----------------------------A 145 (404)
Q Consensus 94 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~----------------------------~ 145 (404)
..+.+.. ...+++|++|+++++ .++... ...+..+++|+.|++++ +
T Consensus 318 p~i~~~~----~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 318 PKIDDFS----FQWLKCLEHLNMEDN-DIPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp CEECTTT----TTTCTTCCEEECCSC-CBCCCC-TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred cccChhh----cccCCCCCEEECCCC-ccCCCC-hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence 0011111 123455555555553 221110 01123345555555544 3
Q ss_pred CCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCH
Q 015585 146 SFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITD 225 (404)
Q Consensus 146 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 225 (404)
. ++... ......+++|+.|+++++..........+..+++|++|+++++ .+.......+..+++|+.|++.++.+..
T Consensus 392 ~-l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 392 K-ISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp C-CCEEC-TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred C-CCeEC-hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC-CcceeChhhhhcCcccccchhccccccc
Confidence 2 11100 0112245566666666543111000122345566666666653 3333333344556677777777665432
Q ss_pred HH-HHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHH-------HHHHhCCCCceE
Q 015585 226 SG-LSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGIL-------TIAAAGIGIIDL 297 (404)
Q Consensus 226 ~~-l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~-------~l~~~~~~L~~L 297 (404)
.+ .......+++|+.|+++++. ++......+ ..+++|++|+++++ .++..... .....+++|+.|
T Consensus 469 ~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 469 VDSSPSPFQPLRNLTILDLSNNN-IANINDDML-----EGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred cccCCcccccCCCCCEEECCCCC-CCcCChhhh-----ccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEE
Confidence 11 11112356778888887775 432211111 35678888888885 44321100 012356888999
Q ss_pred eecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhc
Q 015585 298 CVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNE 377 (404)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 377 (404)
++++|. ++......+. ++++|+.|++++ +.++......+. .+++|+.|++++|.++......+. ..
T Consensus 542 ~L~~N~-l~~i~~~~~~-------~l~~L~~L~Ls~-N~l~~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~---~~ 607 (680)
T 1ziw_A 542 NLESNG-FDEIPVEVFK-------DLFELKIIDLGL-NNLNTLPASVFN--NQVSLKSLNLQKNLITSVEKKVFG---PA 607 (680)
T ss_dssp ECCSSC-CCCCCTTTTT-------TCTTCCEEECCS-SCCCCCCTTTTT--TCTTCCEEECTTSCCCBCCHHHHH---HH
T ss_pred ECCCCC-CCCCCHHHcc-------cccCcceeECCC-CCCCcCCHhHhC--CCCCCCEEECCCCcCCccChhHhc---cc
Confidence 998884 5421111122 588999999988 466643333332 488999999999999876544433 24
Q ss_pred CCccE-EEeccccccccC
Q 015585 378 RPWLT-FCLDGCEIGCHD 394 (404)
Q Consensus 378 ~~~l~-l~~~~~~~~~~~ 394 (404)
+++++ +++.+|++.|++
T Consensus 608 ~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 608 FRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp HTTCSEEECTTCCCCBCC
T ss_pred ccccCEEEccCCCcccCC
Confidence 57776 999999999985
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=3.6e-22 Score=200.07 Aligned_cols=235 Identities=17% Similarity=0.144 Sum_probs=129.3
Q ss_pred HhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCC-CCCEEeccCCCCCChHHHHhhhC-
Q 015585 132 LSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSR-NLEVLDLGGCKSIADTCLRSISC- 209 (404)
Q Consensus 132 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~- 209 (404)
..+++|+.|+++++....... ......+++|+.|+++++. +.......+..++ +|++|+++++ .+.......+..
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip-~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N-~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQN 391 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECC-HHHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECCSS-EEEEECCTTTTCS
T ss_pred hcCCCccEEECCCCcccCcCC-HHHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEccCC-CcCCCcChhhhhc
Confidence 445566666666553110000 0112345566666666543 1111111122233 5666666553 333322333332
Q ss_pred -CCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH
Q 015585 210 -LRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA 288 (404)
Q Consensus 210 -~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 288 (404)
+++|++|++.+|.+++.....+ ..+++|++|++++|. +.......+ ..+++|++|+++++ .++......+
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~-l~~~~p~~l-----~~l~~L~~L~L~~n-~l~~~~p~~~- 462 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNY-LSGTIPSSL-----GSLSKLRDLKLWLN-MLEGEIPQEL- 462 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSE-EESCCCGGG-----GGCTTCCEEECCSS-CCCSCCCGGG-
T ss_pred ccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCc-ccCcccHHH-----hcCCCCCEEECCCC-cccCcCCHHH-
Confidence 5678888887776553222222 257788888888775 332211222 25678888888876 4432111112
Q ss_pred HhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCCh
Q 015585 289 AAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGN 368 (404)
Q Consensus 289 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~ 368 (404)
..+++|+.|++++|. ++......+. .+++|+.|++++| .++......+. .+++|++|++++|.+++...
T Consensus 463 ~~l~~L~~L~L~~N~-l~~~~p~~l~-------~l~~L~~L~L~~N-~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 463 MYVKTLETLILDFND-LTGEIPSGLS-------NCTNLNWISLSNN-RLTGEIPKWIG--RLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp GGCTTCCEEECCSSC-CCSCCCGGGG-------GCTTCCEEECCSS-CCCSCCCGGGG--GCTTCCEEECCSSCCEEECC
T ss_pred cCCCCceEEEecCCc-ccCcCCHHHh-------cCCCCCEEEccCC-ccCCcCChHHh--cCCCCCEEECCCCcccCcCC
Confidence 356888888888885 4432222233 5888999999885 55543334444 37889999999988864322
Q ss_pred HHHHHHHhcCCccE-EEecccccccc
Q 015585 369 PVITEIHNERPWLT-FCLDGCEIGCH 393 (404)
Q Consensus 369 ~~~~~~~~~~~~l~-l~~~~~~~~~~ 393 (404)
. . ...+++++ +++.+|.+.+.
T Consensus 532 ~---~-l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 532 A---E-LGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp G---G-GGGCTTCCEEECCSSEEESB
T ss_pred H---H-HcCCCCCCEEECCCCccCCc
Confidence 1 2 24678887 89988888754
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=2.5e-20 Score=172.19 Aligned_cols=175 Identities=13% Similarity=0.112 Sum_probs=106.8
Q ss_pred CCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcc
Q 015585 15 SSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFK 94 (404)
Q Consensus 15 ~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 94 (404)
.++++++|+++++.+.... ..+...+++|++|++++| .++......++.+++|++|+++++. +.
T Consensus 43 ~l~~l~~l~l~~~~l~~l~-~~~~~~l~~L~~L~L~~n---------~i~~~~~~~~~~l~~L~~L~L~~n~------l~ 106 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDL---------QIEEIDTYAFAYAHTIQKLYMGFNA------IR 106 (390)
T ss_dssp GGCCCSEEEEESCEESEEC-THHHHHCCCCSEEECTTS---------CCCEECTTTTTTCTTCCEEECCSSC------CC
T ss_pred ccCCceEEEecCCchhhCC-hhHhcccccCcEEECCCC---------cccccChhhccCCCCcCEEECCCCC------CC
Confidence 4588999999987666432 333345899999999986 3444334457788999999998863 22
Q ss_pred ccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCC
Q 015585 95 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLI 174 (404)
Q Consensus 95 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 174 (404)
.+....+ ..+++|++|+++++ .++... ..++..+++|++|+++++. +.... ......+++|+.|+++++. +
T Consensus 107 ~~~~~~~----~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l 177 (390)
T 3o6n_A 107 YLPPHVF----QNVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNNN-LERIE-DDTFQATTSLQNLQLSSNR-L 177 (390)
T ss_dssp CCCTTTT----TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCBCC-TTTTSSCTTCCEEECCSSC-C
T ss_pred cCCHHHh----cCCCCCCEEECCCC-ccCcCC-HHHhcCCCCCcEEECCCCc-cCccC-hhhccCCCCCCEEECCCCc-C
Confidence 2322222 46788999999885 443211 1123567889999998875 22111 1123467889999998865 3
Q ss_pred CHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCcc
Q 015585 175 TSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI 223 (404)
Q Consensus 175 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 223 (404)
... .+..+++|+.|+++++ .+.. +...++|++|+++++.+
T Consensus 178 ~~~---~~~~l~~L~~L~l~~n-~l~~-----~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 178 THV---DLSLIPSLFHANVSYN-LLST-----LAIPIAVEELDASHNSI 217 (390)
T ss_dssp SBC---CGGGCTTCSEEECCSS-CCSE-----EECCSSCSEEECCSSCC
T ss_pred Ccc---ccccccccceeecccc-cccc-----cCCCCcceEEECCCCee
Confidence 322 2345677777777763 3322 22334455555555544
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=8.8e-21 Score=183.67 Aligned_cols=161 Identities=20% Similarity=0.168 Sum_probs=95.1
Q ss_pred hCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH-HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHH
Q 015585 208 SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK-GISHLLCVGGTISQSLTTLDLGYMPGISDDGILT 286 (404)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 286 (404)
..+++|++|++++|.+++.....+ ..+++|+.|+++++. ++.. .+.... ..+++|++|+++++ .++......
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~~----~~l~~L~~L~l~~N-~l~~~~~~~ 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNG-LKNFFKVALMT----KNMSSLETLDVSLN-SLNSHAYDR 422 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSC-CCBTTHHHHTT----TTCTTCCEEECTTS-CCBSCCSSC
T ss_pred cCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCCC-cCCcccchhhh----cCCCCCCEEECCCC-cCCCccChh
Confidence 345667777777776654222221 246677777777665 4331 112222 35667777777765 333200001
Q ss_pred HHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccC-CCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccC
Q 015585 287 IAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKS-KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 365 (404)
Q Consensus 287 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~ 365 (404)
....+++|+.|++++|. +++. ... .. ++|+.|++++| .++.... .+. .+++|++|++++|.++.
T Consensus 423 ~~~~l~~L~~L~l~~n~-l~~~----~~~------~l~~~L~~L~L~~N-~l~~ip~-~~~--~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 423 TCAWAESILVLNLSSNM-LTGS----VFR------CLPPKVKVLDLHNN-RIMSIPK-DVT--HLQALQELNVASNQLKS 487 (562)
T ss_dssp CCCCCTTCCEEECCSSC-CCGG----GGS------SCCTTCSEEECCSS-CCCCCCT-TTT--SSCCCSEEECCSSCCCC
T ss_pred hhcCcccCCEEECCCCC-CCcc----hhh------hhcCcCCEEECCCC-cCcccCh-hhc--CCCCCCEEECCCCCCCC
Confidence 11235677777777774 5431 122 23 57888888885 6653211 111 48899999999999976
Q ss_pred CChHHHHHHHhcCCccE-EEeccccccccC
Q 015585 366 KGNPVITEIHNERPWLT-FCLDGCEIGCHD 394 (404)
Q Consensus 366 ~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~ 394 (404)
.... ....++.++ +++.+|++.|++
T Consensus 488 l~~~----~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 488 VPDG----VFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CCTT----STTTCTTCCCEECCSCCBCCCH
T ss_pred CCHH----HHhcCCCCCEEEecCCCcCCCc
Confidence 5433 235678888 999999999873
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.77 E-value=2e-18 Score=163.20 Aligned_cols=295 Identities=21% Similarity=0.206 Sum_probs=200.8
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585 13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT 92 (404)
Q Consensus 13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 92 (404)
+..+++|++|+++++.+..... ...+++|++|++++|.. +. +..+..+++|++|+++++.......
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l---------~~--~~~~~~l~~L~~L~l~~n~l~~~~~ 151 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQI---------TD--IDPLKNLTNLNRLELSSNTISDISA 151 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC---------CC--CGGGTTCTTCSEEEEEEEEECCCGG
T ss_pred hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCC---------CC--ChHHcCCCCCCEEECCCCccCCChh
Confidence 6778888899988877765432 34588888888888732 21 1225667777777776653211110
Q ss_pred ccccC----------hhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCC
Q 015585 93 FKRVN----------DMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCA 162 (404)
Q Consensus 93 ~~~~~----------~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 162 (404)
+.... -..+.. ...+++|+.|+++++. ++.. . .+..+++|+.|+++++....... ...+++
T Consensus 152 ~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~ 222 (466)
T 1o6v_A 152 LSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNK-VSDI--S-VLAKLTNLESLIATNNQISDITP----LGILTN 222 (466)
T ss_dssp GTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSC-CCCC--G-GGGGCTTCSEEECCSSCCCCCGG----GGGCTT
T ss_pred hccCCcccEeecCCcccCchh-hccCCCCCEEECcCCc-CCCC--h-hhccCCCCCEEEecCCccccccc----ccccCC
Confidence 00000 000011 3567899999999863 3332 1 25678999999999986322222 346899
Q ss_pred ccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEe
Q 015585 163 LVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLC 242 (404)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~ 242 (404)
|+.|+++++. +.+ +..+..+++|++|+++++ .+... ..+..+++|+.|++++|.+++... ...+++|+.|+
T Consensus 223 L~~L~l~~n~-l~~--~~~l~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~ 293 (466)
T 1o6v_A 223 LDELSLNGNQ-LKD--IGTLASLTNLTDLDLANN-QISNL--APLSGLTKLTELKLGANQISNISP---LAGLTALTNLE 293 (466)
T ss_dssp CCEEECCSSC-CCC--CGGGGGCTTCSEEECCSS-CCCCC--GGGTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEE
T ss_pred CCEEECCCCC-ccc--chhhhcCCCCCEEECCCC-ccccc--hhhhcCCCCCEEECCCCccCcccc---ccCCCccCeEE
Confidence 9999999976 332 235678999999999996 44432 237789999999999998775322 34689999999
Q ss_pred ecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCccc
Q 015585 243 LRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEK 322 (404)
Q Consensus 243 l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 322 (404)
+++|. +.... .+ ..+++|+.|+++++ .+++... ...+++|+.|++++|. +++. ..+. .
T Consensus 294 L~~n~-l~~~~--~~-----~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~l~-------~ 351 (466)
T 1o6v_A 294 LNENQ-LEDIS--PI-----SNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDV--SSLA-------N 351 (466)
T ss_dssp CCSSC-CSCCG--GG-----GGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCC--GGGT-------T
T ss_pred cCCCc-ccCch--hh-----cCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCc--hhhc-------c
Confidence 99987 44322 12 36889999999997 5554322 3468999999999995 6543 2233 5
Q ss_pred CCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCC
Q 015585 323 SKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 366 (404)
Q Consensus 323 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~ 366 (404)
+++|+.|++++| .++.... + ..+++|+.|++++|.++..
T Consensus 352 l~~L~~L~l~~n-~l~~~~~--~--~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 352 LTNINWLSAGHN-QISDLTP--L--ANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CTTCCEEECCSS-CCCBCGG--G--TTCTTCCEEECCCEEEECC
T ss_pred CCCCCEEeCCCC-ccCccch--h--hcCCCCCEEeccCCcccCC
Confidence 999999999996 5554332 3 3599999999999998753
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=7.1e-20 Score=169.15 Aligned_cols=313 Identities=13% Similarity=0.049 Sum_probs=214.4
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585 13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT 92 (404)
Q Consensus 13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 92 (404)
+..+++|++|+++++.+.......+. .+++|++|++++|. ++......++.+++|++|+++++.
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------ 128 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNA---------IRYLPPHVFQNVPLLTVLVLERND------ 128 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC------
T ss_pred hcccccCcEEECCCCcccccChhhcc-CCCCcCEEECCCCC---------CCcCCHHHhcCCCCCCEEECCCCc------
Confidence 57789999999999888754333443 48999999999973 444334457889999999999864
Q ss_pred ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585 93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 172 (404)
Q Consensus 93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 172 (404)
+..+.... ...+++|++|+++++ .+.... ...+..+++|+.|+++++. ++... ...+++|+.|+++++.
T Consensus 129 l~~l~~~~----~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~----~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 129 LSSLPRGI----FHNTPKLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHANVSYNL 197 (390)
T ss_dssp CCCCCTTT----TTTCTTCCEEECCSS-CCCBCC-TTTTSSCTTCCEEECCSSC-CSBCC----GGGCTTCSEEECCSSC
T ss_pred cCcCCHHH----hcCCCCCcEEECCCC-ccCccC-hhhccCCCCCCEEECCCCc-CCccc----cccccccceeeccccc
Confidence 22333221 246789999999985 333211 1124567999999999985 33222 3467899999999864
Q ss_pred CCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585 173 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 252 (404)
Q Consensus 173 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 252 (404)
+. .+...+.|++|+++++ .+..... ...++|+.|++++|.+++. .....+++|++|+++++. +...
T Consensus 198 -l~-----~~~~~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~-l~~~ 263 (390)
T 3o6n_A 198 -LS-----TLAIPIAVEELDASHN-SINVVRG---PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE-LEKI 263 (390)
T ss_dssp -CS-----EEECCSSCSEEECCSS-CCCEEEC---CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCEE
T ss_pred -cc-----ccCCCCcceEEECCCC-eeeeccc---cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCc-CCCc
Confidence 32 2445678999999985 4543211 2457999999999988764 223468999999999986 5543
Q ss_pred HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEecc
Q 015585 253 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC 332 (404)
Q Consensus 253 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~ 332 (404)
....+ ..+++|++|+++++ .++... .....+++|+.|++++|. ++... ..+. .+++|+.|+++
T Consensus 264 ~~~~~-----~~l~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~n~-l~~~~-~~~~-------~l~~L~~L~L~ 326 (390)
T 3o6n_A 264 MYHPF-----VKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHNH-LLHVE-RNQP-------QFDRLENLYLD 326 (390)
T ss_dssp ESGGG-----TTCSSCCEEECCSS-CCCEEE--CSSSCCTTCCEEECCSSC-CCCCG-GGHH-------HHTTCSEEECC
T ss_pred ChhHc-----cccccCCEEECCCC-cCcccC--cccCCCCCCCEEECCCCc-ceecC-cccc-------ccCcCCEEECC
Confidence 22233 36789999999996 554321 111347899999999995 54221 1233 37889999999
Q ss_pred CCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccEEEeccccccccC
Q 015585 333 NCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHD 394 (404)
Q Consensus 333 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 394 (404)
+| .++... ...+++|+.|++++|++. ......+.+..+...+. +.+..|..
T Consensus 327 ~N-~i~~~~-----~~~~~~L~~L~l~~N~~~---~~~~~~~~~~~~~~~~~--~~~~~c~~ 377 (390)
T 3o6n_A 327 HN-SIVTLK-----LSTHHTLKNLTLSHNDWD---CNSLRALFRNVARPAVD--DADQHCKI 377 (390)
T ss_dssp SS-CCCCCC-----CCTTCCCSEEECCSSCEE---HHHHHHHTTTCCTTTBC--CCCSCCCT
T ss_pred CC-ccceeC-----chhhccCCEEEcCCCCcc---chhHHHHHHHHHhhccc--ccCceecc
Confidence 96 555432 235889999999999984 55666666666555433 34445543
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=6.2e-20 Score=183.46 Aligned_cols=330 Identities=14% Similarity=0.097 Sum_probs=178.4
Q ss_pred cccCCCCCcEEeccCCCCChH-----------------HHHHHH-hhCCCccEEeecCCCCCCcccccccchhhhhhhcC
Q 015585 12 SYYSSFNLRSLSLVLDVITDE-----------------LLITIT-ASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGS 73 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~~~~~~~-----------------~~~~i~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 73 (404)
.+..+++|++|+|+++.++.. .+..+. ..+++|++|++++|.. .......++.
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l---------~~~iP~~l~~ 513 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN---------MTQLPDFLYD 513 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT---------CCSCCGGGGG
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC---------CccChHHHhC
Confidence 478899999999999888862 333332 2589999999999742 2223355778
Q ss_pred CCCCceEEecccccCCCCCccccCh----hhHHHHH---hcCCCCcEEEcCCCCCCCHHHHHH--HHHhCCCCcEEEecC
Q 015585 74 CHHLTGLSLTRCRHNHQGTFKRVND----MGMFLLS---EGCKGLESVRLGGFSKVSDAGFAA--ILLSCHSLKKFEVRS 144 (404)
Q Consensus 74 ~~~L~~L~l~~~~~~~~~~~~~~~~----~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~ 144 (404)
+++|+.|+++++.. +.. ..+..+. ..+++|+.|+++++ .++ .+.. .+..+++|+.|++++
T Consensus 514 L~~L~~L~Ls~N~~--------lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~ 582 (876)
T 4ecn_A 514 LPELQSLNIACNRG--------ISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVH 582 (876)
T ss_dssp CSSCCEEECTTCTT--------SCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCC--------cccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCC
Confidence 89999999987520 232 2222221 34568999999885 444 2322 466778888888888
Q ss_pred CCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCC-CCEEeccCCCCCChHHHHhhh---------------
Q 015585 145 ASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRN-LEVLDLGGCKSIADTCLRSIS--------------- 208 (404)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~--------------- 208 (404)
+. ++ .++ ....+++|+.|+++++. +. .....+..+++ |++|+++++ .+.. ....+.
T Consensus 583 N~-l~--~lp-~~~~L~~L~~L~Ls~N~-l~-~lp~~l~~l~~~L~~L~Ls~N-~L~~-lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 583 NK-VR--HLE-AFGTNVKLTDLKLDYNQ-IE-EIPEDFCAFTDQVEGLGFSHN-KLKY-IPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp SC-CC--BCC-CCCTTSEESEEECCSSC-CS-CCCTTSCEECTTCCEEECCSS-CCCS-CCSCCCTTCSSCEEEEECCSS
T ss_pred CC-cc--cch-hhcCCCcceEEECcCCc-cc-cchHHHhhccccCCEEECcCC-CCCc-CchhhhccccCCCCEEECcCC
Confidence 75 33 222 33466777788887764 32 11122445566 777777664 3331 111111
Q ss_pred ----------------CCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhc---CCCCCCcc
Q 015585 209 ----------------CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVG---GTISQSLT 269 (404)
Q Consensus 209 ----------------~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~~~~~L~ 269 (404)
..++|+.|++++|.++.. ...+...+++|+.|++++|. +..... ...... -..+++|+
T Consensus 655 ~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N~-L~~ip~-~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNL-MTSIPE-NSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSCC-CSCCCT-TSSSCTTSCCTTGGGCC
T ss_pred cCCCccccchhhhccccCCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCCc-CCccCh-HHhccccccccccCCcc
Confidence 123555666665554421 12222345666666666654 331100 000000 01223677
Q ss_pred EEecCCCCCCCHHHHHHHH-HhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC-----CCCHHHHH
Q 015585 270 TLDLGYMPGISDDGILTIA-AAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI-----GLSVDSLR 343 (404)
Q Consensus 270 ~L~l~~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~-----~i~~~~~~ 343 (404)
.|+++++ .++... ..+. ..+++|+.|++++|. ++. +...+. .+++|+.|++++++ .+......
T Consensus 732 ~L~Ls~N-~L~~lp-~~l~~~~l~~L~~L~Ls~N~-L~~-----lp~~l~---~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 732 TIDLRFN-KLTSLS-DDFRATTLPYLSNMDVSYNC-FSS-----FPTQPL---NSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp EEECCSS-CCCCCC-GGGSTTTCTTCCEEECCSSC-CSS-----CCCGGG---GCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred EEECCCC-CCccch-HHhhhccCCCcCEEEeCCCC-CCc-----cchhhh---cCCCCCEEECCCCCCcccccccccChH
Confidence 7777765 444211 1111 245677777777764 442 111111 46777777776532 22221122
Q ss_pred hhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccc
Q 015585 344 WVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGC 392 (404)
Q Consensus 344 ~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~ 392 (404)
.+. .+++|+.|++++|.+..+... ..++++ +++.+|++..
T Consensus 801 ~l~--~L~~L~~L~Ls~N~L~~Ip~~-------l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 801 GIT--TCPSLIQLQIGSNDIRKVDEK-------LTPQLYILDIADNPNIS 841 (876)
T ss_dssp TGG--GCSSCCEEECCSSCCCBCCSC-------CCSSSCEEECCSCTTCE
T ss_pred HHh--cCCCCCEEECCCCCCCccCHh-------hcCCCCEEECCCCCCCc
Confidence 222 366777777777776443221 125666 7777776644
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=2e-20 Score=183.25 Aligned_cols=334 Identities=13% Similarity=0.084 Sum_probs=188.3
Q ss_pred cccCCCCCcEEeccCCCCChH-----------------HHHHHH-hhCCCccEEeecCCCCCCcccccccchhhhhhhcC
Q 015585 12 SYYSSFNLRSLSLVLDVITDE-----------------LLITIT-ASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGS 73 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~~~~~~~-----------------~~~~i~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 73 (404)
.+..+++|++|+|+++.++.. .+..+. ..+++|++|++++|. +.......++.
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~---------l~~~~p~~l~~ 271 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP---------NLTKLPTFLKA 271 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT---------TCSSCCTTTTT
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc---------CCccChHHHhc
Confidence 478899999999999888863 333333 158999999999974 23333355778
Q ss_pred CCCCceEEecccccCCCCCccccChhhHH-HHH-----hcCCCCcEEEcCCCCCCCHHHHHH--HHHhCCCCcEEEecCC
Q 015585 74 CHHLTGLSLTRCRHNHQGTFKRVNDMGMF-LLS-----EGCKGLESVRLGGFSKVSDAGFAA--ILLSCHSLKKFEVRSA 145 (404)
Q Consensus 74 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~l~-----~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~ 145 (404)
+++|++|+++++. .+....+. .+. ..+++|+.|+++++ .++ .+.. .+..+++|+.|+++++
T Consensus 272 l~~L~~L~Ls~n~--------~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 272 LPEMQLINVACNR--------GISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp CSSCCEEECTTCT--------TSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSC
T ss_pred CCCCCEEECcCCC--------CCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCC
Confidence 8999999998752 13331122 221 23488999999885 444 2322 4667788888888887
Q ss_pred CCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCC--------------------------CCCEEeccCCCCC
Q 015585 146 SFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSR--------------------------NLEVLDLGGCKSI 199 (404)
Q Consensus 146 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--------------------------~L~~L~l~~~~~~ 199 (404)
.. +. .+. ....+++|+.|+++++. +. .....+..++ +|++|+++++ .+
T Consensus 341 ~l-~g-~ip-~~~~l~~L~~L~L~~N~-l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l 414 (636)
T 4eco_A 341 QL-EG-KLP-AFGSEIKLASLNLAYNQ-IT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN-EI 414 (636)
T ss_dssp CC-EE-ECC-CCEEEEEESEEECCSSE-EE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSS-CT
T ss_pred cC-cc-chh-hhCCCCCCCEEECCCCc-cc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCC-cC
Confidence 52 20 011 12233444444444432 11 0001122233 4555555552 33
Q ss_pred ChHHHHhhh-------CCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhh---cCCCCCCcc
Q 015585 200 ADTCLRSIS-------CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCV---GGTISQSLT 269 (404)
Q Consensus 200 ~~~~~~~l~-------~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~~~~~L~ 269 (404)
.......+. .+++|+.|++++|.++.. ...+...+++|++|+++++. ++.... ....+ ....+++|+
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~-l~~i~~-~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNM-LTEIPK-NSLKDENENFKNTYLLT 491 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSC-CSBCCS-SSSEETTEECTTGGGCC
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccCcC-CHHHHccCCCCCEEECCCCC-CCCcCH-HHhccccccccccCCcc
Confidence 332222233 445777777777766521 12233346778888887765 431110 00000 001123788
Q ss_pred EEecCCCCCCCHHHHHHHH-HhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC-----CCCHHHHH
Q 015585 270 TLDLGYMPGISDDGILTIA-AAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI-----GLSVDSLR 343 (404)
Q Consensus 270 ~L~l~~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~-----~i~~~~~~ 343 (404)
+|+++++ .++... ..+. ..+++|+.|++++|. ++. .-..+. .+++|+.|+++++. .+......
T Consensus 492 ~L~Ls~N-~l~~lp-~~~~~~~l~~L~~L~Ls~N~-l~~-ip~~~~-------~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 492 SIDLRFN-KLTKLS-DDFRATTLPYLVGIDLSYNS-FSK-FPTQPL-------NSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp EEECCSS-CCCBCC-GGGSTTTCTTCCEEECCSSC-CSS-CCCGGG-------GCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred EEECcCC-cCCccC-hhhhhccCCCcCEEECCCCC-CCC-cChhhh-------cCCCCCEEECCCCcccccCcccccChH
Confidence 8888885 555211 1111 256888888888885 543 111222 57888888886532 22322222
Q ss_pred hhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccccC
Q 015585 344 WVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD 394 (404)
Q Consensus 344 ~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~ 394 (404)
.+. .+++|++|++++|.+...... ..+.++ +++.+|++.|.+
T Consensus 561 ~l~--~l~~L~~L~Ls~N~l~~ip~~-------~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 561 GIT--LCPSLTQLQIGSNDIRKVNEK-------ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp TGG--GCSSCCEEECCSSCCCBCCSC-------CCTTCCEEECCSCTTCEEE
T ss_pred HHh--cCCCCCEEECCCCcCCccCHh-------HhCcCCEEECcCCCCcccc
Confidence 333 378899999999888554322 226777 888898887753
No 33
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=1.3e-17 Score=152.23 Aligned_cols=168 Identities=14% Similarity=0.219 Sum_probs=76.3
Q ss_pred hcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCC-CCcEEEcCCCCCCCHH---HHHHHHHhC-CCCcEEEecCC
Q 015585 71 LGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCK-GLESVRLGGFSKVSDA---GFAAILLSC-HSLKKFEVRSA 145 (404)
Q Consensus 71 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~L~~L~l~~~~~~~~~---~~~~l~~~~-~~L~~L~l~~~ 145 (404)
+...++|++|+++++. +.......+......++ +|++|+++++ .+++. .+...+... ++|++|+++++
T Consensus 18 ~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNN------LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp HTSCTTCCEEECTTSC------GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred HhCCCCceEEEccCCC------CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 3455557777777653 22233333333344556 6777777764 33332 233333333 66666666666
Q ss_pred CC--CCHHHHHHHHcCC-CCccEEEccCCCCCCHHHHHHhh----C-CCCCCEEeccCCCCCChHHHHhh----hCCC-C
Q 015585 146 SF--LSDLAFHDLTGVP-CALVEVRLLWCRLITSETVKKLA----S-SRNLEVLDLGGCKSIADTCLRSI----SCLR-K 212 (404)
Q Consensus 146 ~~--~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~----~-~~~L~~L~l~~~~~~~~~~~~~l----~~~~-~ 212 (404)
.. .....+....... ++|+.|+++++. +++.....++ . +++|++|+++++ .+++.+...+ ...+ +
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTT
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCcc
Confidence 41 1122233333333 556666665554 3332222222 2 245555555553 4443322222 2233 5
Q ss_pred CCEEEccCCccCHHHHHHHHh---cC-CCcCEEeecCCC
Q 015585 213 LTALNLTGADITDSGLSILAQ---GN-LPIMNLCLRGCK 247 (404)
Q Consensus 213 L~~L~l~~~~l~~~~l~~l~~---~~-~~L~~L~l~~~~ 247 (404)
|++|++++|.+++.+...++. .+ ++|++|++++|.
T Consensus 169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 555555555544333222221 22 245555555444
No 34
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=2.3e-18 Score=157.29 Aligned_cols=255 Identities=17% Similarity=0.158 Sum_probs=177.9
Q ss_pred HHHHHhcCCCCcEEEcCCCCCCCHH---HHHHHHHhCC-CCcEEEecCCCCCC---HHHHHHHHcCC-CCccEEEccCCC
Q 015585 101 MFLLSEGCKGLESVRLGGFSKVSDA---GFAAILLSCH-SLKKFEVRSASFLS---DLAFHDLTGVP-CALVEVRLLWCR 172 (404)
Q Consensus 101 l~~l~~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~-~L~~L~l~~~~~~~---~~~l~~~~~~~-~~L~~L~l~~~~ 172 (404)
+..+....++|++|+++++ .+++. .+...+..++ +|++|+++++. ++ ...+....... ++|++|++++|.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 4444455667999999996 44443 3444566777 99999999995 43 33444444444 899999999986
Q ss_pred CCCHHHHHH----hhCC-CCCCEEeccCCCCCChHHHHhhh----C-CCCCCEEEccCCccCHHHHHHHHh---cCC-Cc
Q 015585 173 LITSETVKK----LASS-RNLEVLDLGGCKSIADTCLRSIS----C-LRKLTALNLTGADITDSGLSILAQ---GNL-PI 238 (404)
Q Consensus 173 ~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~~l~----~-~~~L~~L~l~~~~l~~~~l~~l~~---~~~-~L 238 (404)
+++..... +..+ ++|++|+++++ .+++.....++ . .++|++|++++|.+++.+...++. ..+ +|
T Consensus 92 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 92 -LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred -CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 44433333 4455 89999999995 67665555443 3 469999999999988766555443 344 89
Q ss_pred CEEeecCCCCCcHHHHHHHHhhcCCCC-CCccEEecCCCCCCCHHHHHHHHH---h-CCCCceEeecCCCCCCHHHHHHH
Q 015585 239 MNLCLRGCKRVTDKGISHLLCVGGTIS-QSLTTLDLGYMPGISDDGILTIAA---A-GIGIIDLCVRSCFYVTDASVEAL 313 (404)
Q Consensus 239 ~~L~l~~~~~l~~~~~~~l~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~---~-~~~L~~L~l~~~~~~~~~~~~~l 313 (404)
++|++++|. +++.+...+.... ..+ ++|++|+++++ .+++.+...+.. . .++|++|++++|. +++.+...+
T Consensus 170 ~~L~Ls~n~-l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l 245 (362)
T 3goz_A 170 NSLNLRGNN-LASKNCAELAKFL-ASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENL 245 (362)
T ss_dssp CEEECTTSC-GGGSCHHHHHHHH-HTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHH
T ss_pred cEeeecCCC-CchhhHHHHHHHH-HhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHH
Confidence 999999987 6554443322100 234 59999999996 677644443332 2 4699999999995 887766666
Q ss_pred HhhCCCcccCCCCcEEeccCCC--CCCHHHHHhhh--cCCCCcccEEecCCccccCC
Q 015585 314 ARKQPDQEKSKQLRRLDLCNCI--GLSVDSLRWVK--RPSFRGLHWLGIGQTRLASK 366 (404)
Q Consensus 314 ~~~~~~~~~~~~L~~L~l~~~~--~i~~~~~~~l~--~~~~~~L~~L~l~~~~l~~~ 366 (404)
..... .+++|+.|++++|. .++..+...+. ...+++|+.|++++|.+...
T Consensus 246 ~~~~~---~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 246 KLLKD---SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHTTT---TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHh---cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 65544 68999999999963 37777666654 23588999999999998644
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=8.6e-19 Score=175.24 Aligned_cols=241 Identities=14% Similarity=0.147 Sum_probs=141.5
Q ss_pred hhCCCccEEeecCCCCCCcccccccch--------hhhhhhc--CCCCCceEEecccccCCCCCccccChhhHHHHHhcC
Q 015585 39 ASLPFLVELDLEDRPNTEPLARLDLTS--------SGLQSLG--SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGC 108 (404)
Q Consensus 39 ~~~~~L~~L~l~~~~~~~~~~~~~~~~--------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 108 (404)
..+++|++|++++|....+........ .....++ .+++|+.|++++|.. ...-+. ....+
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l------~~~iP~----~l~~L 514 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN------MTQLPD----FLYDL 514 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT------CCSCCG----GGGGC
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC------CccChH----HHhCC
Confidence 347899999999974321000000000 1233455 889999999988631 111112 22578
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHH-------hCCCCcEEEecCCCCCCHHHHHH--HHcCCCCccEEEccCCCCCCHHHH
Q 015585 109 KGLESVRLGGFSKVSDAGFAAILL-------SCHSLKKFEVRSASFLSDLAFHD--LTGVPCALVEVRLLWCRLITSETV 179 (404)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~l~~-------~~~~L~~L~l~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~ 179 (404)
++|+.|+++++..++...+..-+. .+++|+.|+++++. ++ .++. ....+++|+.|+++++. +. .+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~--~l 588 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE--EFPASASLQKMVKLGLLDCVHNK-VR--HL 588 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC--BCCCHHHHTTCTTCCEEECTTSC-CC--BC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC--ccCChhhhhcCCCCCEEECCCCC-cc--cc
Confidence 899999999964366522222222 34699999999986 33 2333 45578999999999876 33 22
Q ss_pred HHhhCCCCCCEEeccCCCCCChHHHHhhhCCCC-CCEEEccCCccCHHHHHHHHhcC--CCcCEEeecCCCCCcHHHHHH
Q 015585 180 KKLASSRNLEVLDLGGCKSIADTCLRSISCLRK-LTALNLTGADITDSGLSILAQGN--LPIMNLCLRGCKRVTDKGISH 256 (404)
Q Consensus 180 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~l~~~~l~~l~~~~--~~L~~L~l~~~~~l~~~~~~~ 256 (404)
..+..+++|++|+++++ .+. .....+..+++ |+.|++++|.++. +....... ++|+.|++++|. +.... ..
T Consensus 589 p~~~~L~~L~~L~Ls~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~-l~g~i-p~ 662 (876)
T 4ecn_A 589 EAFGTNVKLTDLKLDYN-QIE-EIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNK-IGSEG-RN 662 (876)
T ss_dssp CCCCTTSEESEEECCSS-CCS-CCCTTSCEECTTCCEEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSC-TTTTS-SS
T ss_pred hhhcCCCcceEEECcCC-ccc-cchHHHhhccccCCEEECcCCCCCc--CchhhhccccCCCCEEECcCCc-CCCcc-cc
Confidence 25668899999999985 555 33345667788 9999999987762 22111112 348888888775 32210 00
Q ss_pred HHh-hcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCC
Q 015585 257 LLC-VGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 303 (404)
Q Consensus 257 l~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 303 (404)
+.. ......++|+.|+++++ .++.. ...+...+++|+.|++++|.
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSCC
T ss_pred chhhhccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCCc
Confidence 000 00012346777777775 44421 12223346677777777663
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=4.7e-21 Score=193.95 Aligned_cols=60 Identities=17% Similarity=0.089 Sum_probs=29.2
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEeccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC 85 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 85 (404)
++|++|+|+++.++......+. .+++|++|++++|.. ........+..+++|++|+++++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~-~l~~L~~LdLs~n~~--------~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFP-FLEQLQLLELGSQYT--------PLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCS-SCCSCSEEEECTTCC--------CCEECTTTTSSCTTCCEEECTTC
T ss_pred CCcCEEECCCCcCCccChhHCc-ccccCeEEeCCCCCC--------ccccCHHHhcCCCCCCEEECCCC
Confidence 5566666666555533222222 356666666666521 11111223455556666666554
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=2e-19 Score=175.11 Aligned_cols=311 Identities=15% Similarity=0.117 Sum_probs=159.9
Q ss_pred CCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcc
Q 015585 15 SSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFK 94 (404)
Q Consensus 15 ~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 94 (404)
.+.+++.++++++.+... +..+...+++|++|++++| .++......++.+++|++|+++++. +.
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~n~------l~ 112 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDL---------QIEEIDTYAFAYAHTIQKLYMGFNA------IR 112 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTS---------CCCEECTTTTTTCTTCCEEECCSSC------CC
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCC---------CCCCCChHHhcCCCCCCEEECCCCc------CC
Confidence 357788888887666543 2333345889999999886 3443333456788888999988753 22
Q ss_pred ccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCC
Q 015585 95 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLI 174 (404)
Q Consensus 95 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 174 (404)
.+....+ ..+++|+.|+++++ .++... ..++..+++|+.|+++++. ++... ......+++|+.|+++++. +
T Consensus 113 ~~~~~~~----~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~-l 183 (597)
T 3oja_B 113 YLPPHVF----QNVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNNN-LERIE-DDTFQATTSLQNLQLSSNR-L 183 (597)
T ss_dssp CCCTTTT----TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCBCC-TTTTTTCTTCCEEECTTSC-C
T ss_pred CCCHHHH----cCCCCCCEEEeeCC-CCCCCC-HHHhccCCCCCEEEeeCCc-CCCCC-hhhhhcCCcCcEEECcCCC-C
Confidence 2332222 46788888888885 333211 1223567888888888874 22111 1123467888888888865 3
Q ss_pred CHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHH
Q 015585 175 TSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGI 254 (404)
Q Consensus 175 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~ 254 (404)
... .+..+++|+.|+++++ .+.. +...++|+.|++++|.++.... ...++|+.|++++|. +++.
T Consensus 184 ~~~---~~~~l~~L~~L~l~~n-~l~~-----l~~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~L~~n~-l~~~-- 247 (597)
T 3oja_B 184 THV---DLSLIPSLFHANVSYN-LLST-----LAIPIAVEELDASHNSINVVRG----PVNVELTILKLQHNN-LTDT-- 247 (597)
T ss_dssp SBC---CGGGCTTCSEEECCSS-CCSE-----EECCTTCSEEECCSSCCCEEEC----SCCSCCCEEECCSSC-CCCC--
T ss_pred CCc---ChhhhhhhhhhhcccC-cccc-----ccCCchhheeeccCCccccccc----ccCCCCCEEECCCCC-CCCC--
Confidence 321 2345677777777763 3322 2233455556655554432110 012455555555554 3221
Q ss_pred HHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCC
Q 015585 255 SHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNC 334 (404)
Q Consensus 255 ~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 334 (404)
..+ ..+++|+.|+++++ .++......+ ..+++|+.|++++|. ++. +..... .+++|+.|++++|
T Consensus 248 ~~l-----~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~-----l~~~~~---~l~~L~~L~Ls~N 311 (597)
T 3oja_B 248 AWL-----LNYPGLVEVDLSYN-ELEKIMYHPF-VKMQRLERLYISNNR-LVA-----LNLYGQ---PIPTLKVLDLSHN 311 (597)
T ss_dssp GGG-----GGCTTCSEEECCSS-CCCEEESGGG-TTCSSCCEEECTTSC-CCE-----EECSSS---CCTTCCEEECCSS
T ss_pred hhh-----ccCCCCCEEECCCC-ccCCCCHHHh-cCccCCCEEECCCCC-CCC-----CCcccc---cCCCCcEEECCCC
Confidence 111 23455555555553 3332111111 134555555555553 322 011001 3455555555553
Q ss_pred CCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEecccccccc
Q 015585 335 IGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 393 (404)
Q Consensus 335 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~ 393 (404)
.++... ..+. .+++|+.|++++|.++... ...+|.++ +++.+|++.|.
T Consensus 312 -~l~~i~-~~~~--~l~~L~~L~L~~N~l~~~~-------~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 312 -HLLHVE-RNQP--QFDRLENLYLDHNSIVTLK-------LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp -CCCCCG-GGHH--HHTTCSEEECCSSCCCCCC-------CCTTCCCSEEECCSSCEEHH
T ss_pred -CCCccC-cccc--cCCCCCEEECCCCCCCCcC-------hhhcCCCCEEEeeCCCCCCh
Confidence 333111 0111 2445555555555554331 13344554 55555555554
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=4.5e-19 Score=170.17 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=106.0
Q ss_pred hCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH-HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHH
Q 015585 208 SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK-GISHLLCVGGTISQSLTTLDLGYMPGISDDGILT 286 (404)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 286 (404)
..+++|++|++++|.+++.....+ ..+++|+.|++++|. ++.. .+.... ..+++|++|+++++ .++......
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~~~~----~~l~~L~~L~Ls~N-~l~~~l~~~ 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQ-LKELSKIAEMT----TQMKSLQQLDISQN-SVSYDEKKG 393 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSC-CCBHHHHHHHH----TTCTTCCEEECCSS-CCBCCGGGC
T ss_pred hhCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCc-cCccccchHHH----hhCCCCCEEECCCC-cCCcccccc
Confidence 467889999999988776333322 357889999998887 5542 222333 46789999999886 444311111
Q ss_pred HHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccC-CCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccC
Q 015585 287 IAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKS-KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 365 (404)
Q Consensus 287 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~ 365 (404)
....+++|+.|++++|. +++. ... .. ++|+.|++++| .++.... .+. .+++|++|++++|.++.
T Consensus 394 ~~~~l~~L~~L~Ls~N~-l~~~----~~~------~l~~~L~~L~Ls~N-~l~~ip~-~~~--~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNI-LTDT----IFR------CLPPRIKVLDLHSN-KIKSIPK-QVV--KLEALQELNVASNQLKS 458 (520)
T ss_dssp SCCCCTTCCEEECCSSC-CCGG----GGG------SCCTTCCEEECCSS-CCCCCCG-GGG--GCTTCCEEECCSSCCCC
T ss_pred hhccCccCCEEECcCCC-CCcc----hhh------hhcccCCEEECCCC-cccccch-hhh--cCCCCCEEECCCCcCCc
Confidence 12346889999999885 5532 122 22 58999999985 6663221 122 48899999999998876
Q ss_pred CChHHHHHHHhcCCccE-EEeccccccccC
Q 015585 366 KGNPVITEIHNERPWLT-FCLDGCEIGCHD 394 (404)
Q Consensus 366 ~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~ 394 (404)
.... ....+++++ +++.+|++.|++
T Consensus 459 l~~~----~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 459 VPDG----IFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CCTT----TTTTCTTCCEEECCSSCBCCCH
T ss_pred cCHH----HhccCCcccEEECcCCCCcccC
Confidence 5333 234677887 999999998873
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=3.4e-18 Score=165.18 Aligned_cols=204 Identities=18% Similarity=0.112 Sum_probs=123.0
Q ss_pred CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccc
Q 015585 16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 95 (404)
Q Consensus 16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 95 (404)
|+.....+.+++.++.. +.. ..++|++|++++|. ++......++.+++|++|+++++. +..
T Consensus 4 C~~~~~c~~~~~~l~~i-p~~---~~~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~------i~~ 64 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSI-PSG---LTAAMKSLDLSFNK---------ITYIGHGDLRACANLQVLILKSSR------INT 64 (549)
T ss_dssp ECTTSEEECTTSCCSSC-CSC---CCTTCCEEECCSSC---------CCEECSSTTSSCTTCCEEECTTSC------CCE
T ss_pred CCCCceEECCCCccccc-ccc---CCCCccEEECcCCc---------cCccChhhhhcCCcccEEECCCCC------cCc
Confidence 34444456665555421 111 13689999999973 444444567899999999999864 222
Q ss_pred cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585 96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 175 (404)
Q Consensus 96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 175 (404)
+....+ ..+++|++|+++++ .++.... ..+..+++|++|+++++. ++..........+++|+.|+++++..+.
T Consensus 65 ~~~~~~----~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~ 137 (549)
T 2z81_A 65 IEGDAF----YSLGSLEHLDLSDN-HLSSLSS-SWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFS 137 (549)
T ss_dssp ECTTTT----TTCTTCCEEECTTS-CCCSCCH-HHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred cChhhc----cccccCCEEECCCC-ccCccCH-HHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCcccc
Confidence 332222 56789999999985 4443222 235678999999999985 3221112234567899999998875333
Q ss_pred HHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585 176 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 247 (404)
Q Consensus 176 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 247 (404)
......+..+++|++|+++++ .+.......+..+++|++|++..+.+.... ..+...+++|++|+++++.
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 138 EIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLSESAFLL-EIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSBSTTHH-HHHHHSTTTBSEEEEESCB
T ss_pred ccCHhhhhcccccCeeeccCC-cccccChhhhhccccCceEecccCcccccc-hhhHhhcccccEEEccCCc
Confidence 322234567888888888874 555444445555666666666665543221 1122235556666555543
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=2.9e-19 Score=167.83 Aligned_cols=207 Identities=20% Similarity=0.147 Sum_probs=121.8
Q ss_pred cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585 12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG 91 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 91 (404)
.+..+++|++|+++++.+... +.+ ..+++|++|++++|. ++.. .++.+++|++|+++++.
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~--~~l-~~l~~L~~L~Ls~n~---------l~~~---~~~~l~~L~~L~Ls~N~----- 96 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM--TGI-EKLTGLTKLICTSNN---------ITTL---DLSQNTNLTYLACDSNK----- 96 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC--TTG-GGCTTCSEEECCSSC---------CSCC---CCTTCTTCSEEECCSSC-----
T ss_pred ChhHcCCCCEEEccCCCcccC--hhh-cccCCCCEEEccCCc---------CCeE---ccccCCCCCEEECcCCC-----
Confidence 456678888888888777643 233 348888888888873 2221 15677888888887753
Q ss_pred CccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCC
Q 015585 92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC 171 (404)
Q Consensus 92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 171 (404)
+..+ . ...+++|++|+++++ .++... +..+++|+.|+++++. ++... ...+++|+.|+++++
T Consensus 97 -l~~~---~----~~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~-l~~l~----l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 97 -LTNL---D----VTPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNT-LTEID----VSHNTQLTELDCHLN 158 (457)
T ss_dssp -CSCC---C----CTTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSC-CSCCC----CTTCTTCCEEECTTC
T ss_pred -Ccee---e----cCCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCCc-cceec----cccCCcCCEEECCCC
Confidence 1222 1 245677888888774 333221 4556777777777774 22211 335667777777776
Q ss_pred CCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcH
Q 015585 172 RLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTD 251 (404)
Q Consensus 172 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~ 251 (404)
..+... .+..+++|++|+++++ .++... +..+++|+.|++++|.+++.. ...+++|++|+++++. ++.
T Consensus 159 ~~~~~~---~~~~l~~L~~L~ls~n-~l~~l~---l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~-l~~ 226 (457)
T 3bz5_A 159 KKITKL---DVTPQTQLTTLDCSFN-KITELD---VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNK-LTE 226 (457)
T ss_dssp SCCCCC---CCTTCTTCCEEECCSS-CCCCCC---CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSC-CSC
T ss_pred Cccccc---ccccCCcCCEEECCCC-ccceec---cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCc-ccc
Confidence 433322 2445677777777664 443321 455666666766666555431 2245666666666665 333
Q ss_pred HHHHHHHhhcCCCCCCccEEecCCC
Q 015585 252 KGISHLLCVGGTISQSLTTLDLGYM 276 (404)
Q Consensus 252 ~~~~~l~~~~~~~~~~L~~L~l~~~ 276 (404)
.. . ..+++|+.|+++++
T Consensus 227 ip----~----~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 227 ID----V----TPLTQLTYFDCSVN 243 (457)
T ss_dssp CC----C----TTCTTCSEEECCSS
T ss_pred cC----c----cccCCCCEEEeeCC
Confidence 11 1 24556666666654
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=5.1e-19 Score=175.39 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=47.7
Q ss_pred hCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCC-CCHHHHHhhhcCCCCcccEEecCCccccCCCh
Q 015585 290 AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG-LSVDSLRWVKRPSFRGLHWLGIGQTRLASKGN 368 (404)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~-i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~ 368 (404)
.+++|+.|++++|. ++......+. .+++|+.|++++|.. +.......+.....++|+.|++++|.++....
T Consensus 327 ~l~~L~~L~l~~n~-l~~~~~~~~~-------~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 327 WLKCLEHLNMEDND-IPGIKSNMFT-------GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp TCTTCCEEECCSCC-BCCCCTTTTT-------TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred cCCCCCEEECCCCc-cCCCChhHhc-------cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence 35666677776663 3321111122 466777777766421 11110011111113577888888877754322
Q ss_pred HHHHHHHhcCCccE-EEeccccccc
Q 015585 369 PVITEIHNERPWLT-FCLDGCEIGC 392 (404)
Q Consensus 369 ~~~~~~~~~~~~l~-l~~~~~~~~~ 392 (404)
. .+ ..+++++ +++.+|.+..
T Consensus 399 ~---~~-~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 399 D---AF-SWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp T---TT-TTCTTCCEEECCSSCCEE
T ss_pred h---hh-hCCCCCCEEeCCCCcCcc
Confidence 1 22 4677887 8888888753
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.74 E-value=3.5e-20 Score=180.00 Aligned_cols=187 Identities=12% Similarity=0.036 Sum_probs=122.1
Q ss_pred CCCCccEEEccCCCCCCHHH--HHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCC
Q 015585 159 VPCALVEVRLLWCRLITSET--VKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNL 236 (404)
Q Consensus 159 ~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~ 236 (404)
.+++|+.|+++++. +.... ...+..+++|++|+++++ .+..... .+..+++|++|++++|.++..........++
T Consensus 345 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 345 DLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp BCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred cCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCC-ccccccc-cccccCCCCEEEccCCccccccchhhhhcCC
Confidence 34566666666654 22111 123456788888888875 3333222 2668899999999998765432222234689
Q ss_pred CcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhh
Q 015585 237 PIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARK 316 (404)
Q Consensus 237 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 316 (404)
+|++|++++|. +.......+ ..+++|++|+++++ .+++..+......+++|+.|++++|. +++.....+.
T Consensus 422 ~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-- 491 (570)
T 2z63_A 422 NLIYLDISHTH-TRVAFNGIF-----NGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN-- 491 (570)
T ss_dssp TCCEEECTTSC-CEECCTTTT-----TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT--
T ss_pred CCCEEeCcCCc-ccccchhhh-----hcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCc-cccCChhhhh--
Confidence 99999999986 433221122 46789999999997 44321111222457999999999995 6543222333
Q ss_pred CCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCC
Q 015585 317 QPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 366 (404)
Q Consensus 317 ~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~ 366 (404)
.+++|+.|++++| .++......+. .+++|+.|++++|+++..
T Consensus 492 -----~l~~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 492 -----SLSSLQVLNMASN-QLKSVPDGIFD--RLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp -----TCTTCCEEECCSS-CCSCCCTTTTT--TCTTCCEEECCSSCBCCC
T ss_pred -----cccCCCEEeCCCC-cCCCCCHHHhh--cccCCcEEEecCCcccCC
Confidence 5899999999996 66654333343 589999999999998754
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=6.2e-19 Score=171.71 Aligned_cols=302 Identities=13% Similarity=0.045 Sum_probs=207.8
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585 13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT 92 (404)
Q Consensus 13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 92 (404)
+..+++|++|+|+++.+.......+. .+++|++|++++|. ++......++.+++|++|+++++.
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------ 134 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNA---------IRYLPPHVFQNVPLLTVLVLERND------ 134 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC------
T ss_pred HccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCCc---------CCCCCHHHHcCCCCCCEEEeeCCC------
Confidence 56789999999999888764433444 48999999999973 444344456889999999999864
Q ss_pred ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585 93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 172 (404)
Q Consensus 93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 172 (404)
+..+.... +..+++|+.|+++++ .++... ...+..+++|+.|+++++. ++... ...+++|+.|+++++.
T Consensus 135 l~~l~~~~----~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~----~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 135 LSSLPRGI----FHNTPKLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHANVSYNL 203 (597)
T ss_dssp CCCCCTTT----TTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECTTSC-CSBCC----GGGCTTCSEEECCSSC
T ss_pred CCCCCHHH----hccCCCCCEEEeeCC-cCCCCC-hhhhhcCCcCcEEECcCCC-CCCcC----hhhhhhhhhhhcccCc
Confidence 22333221 256789999999985 333221 1124567999999999985 33222 3467899999999875
Q ss_pred CCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585 173 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 252 (404)
Q Consensus 173 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 252 (404)
+. .+...++|+.|+++++ .+..... ...++|+.|++++|.+++. .....+++|+.|++++|. +...
T Consensus 204 -l~-----~l~~~~~L~~L~ls~n-~l~~~~~---~~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~ 269 (597)
T 3oja_B 204 -LS-----TLAIPIAVEELDASHN-SINVVRG---PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE-LEKI 269 (597)
T ss_dssp -CS-----EEECCTTCSEEECCSS-CCCEEEC---SCCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCEE
T ss_pred -cc-----cccCCchhheeeccCC-ccccccc---ccCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCc-cCCC
Confidence 32 2456788999999985 4443211 1247899999999988763 223468999999999987 5543
Q ss_pred HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEecc
Q 015585 253 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC 332 (404)
Q Consensus 253 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~ 332 (404)
....+ ..+++|+.|+++++ .++... .....+++|+.|++++|. ++... ..+. .+++|+.|+++
T Consensus 270 ~~~~~-----~~l~~L~~L~Ls~N-~l~~l~--~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~-------~l~~L~~L~L~ 332 (597)
T 3oja_B 270 MYHPF-----VKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHNH-LLHVE-RNQP-------QFDRLENLYLD 332 (597)
T ss_dssp ESGGG-----TTCSSCCEEECTTS-CCCEEE--CSSSCCTTCCEEECCSSC-CCCCG-GGHH-------HHTTCSEEECC
T ss_pred CHHHh-----cCccCCCEEECCCC-CCCCCC--cccccCCCCcEEECCCCC-CCccC-cccc-------cCCCCCEEECC
Confidence 22233 36789999999996 554311 111347899999999996 54211 1233 47889999999
Q ss_pred CCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCcc
Q 015585 333 NCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWL 381 (404)
Q Consensus 333 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l 381 (404)
+| .++... ...+++|+.|++++|++. ...+..+....+..
T Consensus 333 ~N-~l~~~~-----~~~~~~L~~L~l~~N~~~---~~~~~~~~~~~~~~ 372 (597)
T 3oja_B 333 HN-SIVTLK-----LSTHHTLKNLTLSHNDWD---CNSLRALFRNVARP 372 (597)
T ss_dssp SS-CCCCCC-----CCTTCCCSEEECCSSCEE---HHHHHHHTTTCCTT
T ss_pred CC-CCCCcC-----hhhcCCCCEEEeeCCCCC---ChhHHHHHHHHhhh
Confidence 96 555432 235899999999999984 44455554444433
No 44
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=2.4e-19 Score=175.68 Aligned_cols=243 Identities=9% Similarity=0.045 Sum_probs=141.7
Q ss_pred hhCCCccEEeecCCCCCCc----ccccc----cchhhhhhhc--CCCCCceEEecccccCCCCCccccChhhHHHHHhcC
Q 015585 39 ASLPFLVELDLEDRPNTEP----LARLD----LTSSGLQSLG--SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGC 108 (404)
Q Consensus 39 ~~~~~L~~L~l~~~~~~~~----~~~~~----~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 108 (404)
..+++|++|++++|...++ .|... ........++ .+++|++|+++++.. ...-+.. ...+
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l------~~~~p~~----l~~l 272 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN------LTKLPTF----LKAL 272 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT------CSSCCTT----TTTC
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC------CccChHH----HhcC
Confidence 3488999999999853210 00000 0000334466 899999999988641 1111111 2567
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHHh------CCCCcEEEecCCCCCCHHHHHH--HHcCCCCccEEEccCCCCCCHHHHH
Q 015585 109 KGLESVRLGGFSKVSDAGFAAILLS------CHSLKKFEVRSASFLSDLAFHD--LTGVPCALVEVRLLWCRLITSETVK 180 (404)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~l~~~------~~~L~~L~l~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~ 180 (404)
++|+.|+++++..++...+..-+.. +++|+.|+++++. ++ .+.. ....+++|+.|+++++. +.....
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip- 347 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TFPVETSLQKMKKLGMLECLYNQ-LEGKLP- 347 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SCCCHHHHTTCTTCCEEECCSCC-CEEECC-
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC--ccCchhhhccCCCCCEEeCcCCc-Cccchh-
Confidence 8999999999643766233333333 4899999999986 33 2333 45588999999999876 331111
Q ss_pred HhhCCCCCCEEeccCCCCCChHHHHhhhCCCC-CCEEEccCCccCHHHHHHHHh--cCCCcCEEeecCCCCCcHHHHHHH
Q 015585 181 KLASSRNLEVLDLGGCKSIADTCLRSISCLRK-LTALNLTGADITDSGLSILAQ--GNLPIMNLCLRGCKRVTDKGISHL 257 (404)
Q Consensus 181 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~l~~~~l~~l~~--~~~~L~~L~l~~~~~l~~~~~~~l 257 (404)
.+..+++|++|+++++ .+. .....+..+++ |++|++++|.++. +..... .+++|+.|++++|. +.......+
T Consensus 348 ~~~~l~~L~~L~L~~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l 422 (636)
T 4eco_A 348 AFGSEIKLASLNLAYN-QIT-EIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNF 422 (636)
T ss_dssp CCEEEEEESEEECCSS-EEE-ECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSC-TTTTTTCSS
T ss_pred hhCCCCCCCEEECCCC-ccc-cccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCc-CCCcchhhh
Confidence 5567889999999985 444 23334567778 9999999887662 211111 13367888887775 332111100
Q ss_pred H--hhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCC
Q 015585 258 L--CVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 303 (404)
Q Consensus 258 ~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 303 (404)
. ......+++|++|+++++ .++.. ...+...+++|+.|++++|.
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECCSSC
T ss_pred cccccccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECCCCC
Confidence 0 000003456777777765 44421 11223345666666666663
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=4.7e-18 Score=164.53 Aligned_cols=161 Identities=11% Similarity=0.149 Sum_probs=113.7
Q ss_pred hCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHH-HHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhc
Q 015585 183 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDS-GLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVG 261 (404)
Q Consensus 183 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 261 (404)
..+++|++|+++++ .+.......+..+++|+.|++++|.++.. ........+++|++|+++++. +.........
T Consensus 350 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~--- 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTC--- 424 (562)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCC---
T ss_pred cCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhh---
Confidence 45788999999984 66665566678899999999999988752 223333468999999999987 4331111112
Q ss_pred CCCCCCccEEecCCCCCCCHHHHHHHHHhC-CCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHH
Q 015585 262 GTISQSLTTLDLGYMPGISDDGILTIAAAG-IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVD 340 (404)
Q Consensus 262 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~ 340 (404)
..+++|++|+++++ .++.... ..+ ++|+.|++++|. ++ .+..... .+++|+.|+++++ .++..
T Consensus 425 -~~l~~L~~L~l~~n-~l~~~~~----~~l~~~L~~L~L~~N~-l~-----~ip~~~~---~l~~L~~L~L~~N-~l~~l 488 (562)
T 3a79_B 425 -AWAESILVLNLSSN-MLTGSVF----RCLPPKVKVLDLHNNR-IM-----SIPKDVT---HLQALQELNVASN-QLKSV 488 (562)
T ss_dssp -CCCTTCCEEECCSS-CCCGGGG----SSCCTTCSEEECCSSC-CC-----CCCTTTT---SSCCCSEEECCSS-CCCCC
T ss_pred -cCcccCCEEECCCC-CCCcchh----hhhcCcCCEEECCCCc-Cc-----ccChhhc---CCCCCCEEECCCC-CCCCC
Confidence 46789999999996 6654222 233 699999999995 65 2222222 5899999999995 66643
Q ss_pred HHHhhhcCCCCcccEEecCCccccCC
Q 015585 341 SLRWVKRPSFRGLHWLGIGQTRLASK 366 (404)
Q Consensus 341 ~~~~l~~~~~~~L~~L~l~~~~l~~~ 366 (404)
....+ ..+++|+.|++++|++...
T Consensus 489 ~~~~~--~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 489 PDGVF--DRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CTTST--TTCTTCCCEECCSCCBCCC
T ss_pred CHHHH--hcCCCCCEEEecCCCcCCC
Confidence 32223 3589999999999998743
No 46
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=1.5e-18 Score=175.66 Aligned_cols=116 Identities=21% Similarity=0.144 Sum_probs=63.6
Q ss_pred ccccCCCCCcEEeccCCCCChHH-HHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCC
Q 015585 11 SSYYSSFNLRSLSLVLDVITDEL-LITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNH 89 (404)
Q Consensus 11 ~~~~~~~~L~~L~L~~~~~~~~~-~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 89 (404)
..+..+++|++|+|+++...... ...+ ..+++|++|++++|. +.......++.+++|++|+++++.
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~Ls~N~---------l~~~~p~~~~~l~~L~~L~Ls~n~--- 108 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDLGSSK---------IYFLHPDAFQGLFHLFELRLYFCG--- 108 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEECTTCC---------CCEECTTSSCSCSSCCCEECTTCC---
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEECCCCc---------CcccCHhHccCCcccCEeeCcCCC---
Confidence 34677888888888876332222 2223 347888888888863 333333456677777777777653
Q ss_pred CCCccccChhhHH-HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 015585 90 QGTFKRVNDMGMF-LLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS 146 (404)
Q Consensus 90 ~~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 146 (404)
+.+..+. .....+++|++|+++++ .+........+..+++|+.|+++++.
T Consensus 109 ------l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 109 ------LSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp ------CSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred ------CCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCc
Confidence 1110000 00134567777777664 22221111224556677777776663
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=1.2e-18 Score=170.43 Aligned_cols=200 Identities=17% Similarity=0.094 Sum_probs=109.1
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 96 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 96 (404)
++|++|+++++.+.......+. .+++|++|++++|. ++......++.+++|++|+++++. +..+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~---------l~~i~~~~~~~l~~L~~L~Ls~n~------l~~~ 95 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFS-NFSELQWLDLSRCE---------IETIEDKAWHGLHHLSNLILTGNP------IQSF 95 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCC---------CCEECTTTTTTCTTCCEEECTTCC------CCCC
T ss_pred CCcCEEECCCCCcCEeChhhcc-CCccCcEEeCCCCc---------ccccCHHHhhchhhcCEeECCCCc------cccc
Confidence 6788888887777654333343 47888888888863 333333446777888888887753 2222
Q ss_pred ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585 97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 176 (404)
Q Consensus 97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 176 (404)
.+..+ ..+++|++|+++++. +....... +..+++|++|+++++. +....+......+++|+.|+++++. +..
T Consensus 96 ~p~~~----~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~ 167 (606)
T 3vq2_A 96 SPGSF----SGLTSLENLVAVETK-LASLESFP-IGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNY-IQT 167 (606)
T ss_dssp CTTSS----TTCTTCCEEECTTSC-CCCSSSSC-CTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSC-CCE
T ss_pred Chhhc----CCcccCCEEEccCCc-cccccccc-cCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCc-cee
Confidence 22222 456788888887752 22111011 4556788888888775 2221222334467788888887764 222
Q ss_pred ---HHHHHhhCCCC-CCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEe
Q 015585 177 ---ETVKKLASSRN-LEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLC 242 (404)
Q Consensus 177 ---~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~ 242 (404)
..+..+..++. +++|+++++ .+.......+ ...+|+.|++++|.++..........+++++.+.
T Consensus 168 ~~~~~~~~l~~L~~~l~~L~l~~n-~l~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~ 235 (606)
T 3vq2_A 168 ITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235 (606)
T ss_dssp ECTTTTHHHHHCTTCCCEEECTTC-CCCEECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEE
T ss_pred cChhhhhhhhccccccceeeccCC-CcceeCcccc-cCceeeeeeccCCccchhHHHHHhcccccccccc
Confidence 22222333332 456666663 3332222222 2236666776666665444444444444444433
No 48
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=4.6e-17 Score=152.89 Aligned_cols=283 Identities=15% Similarity=0.081 Sum_probs=188.0
Q ss_pred cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585 12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG 91 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 91 (404)
.+..+++|++|+++++.++... + ..+++|++|++++|. ++.. .++.+++|++|+++++.
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~---~-~~l~~L~~L~Ls~N~---------l~~~---~~~~l~~L~~L~L~~N~----- 117 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD---L-SQNTNLTYLACDSNK---------LTNL---DVTPLTKLTYLNCDTNK----- 117 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC---C-TTCTTCSEEECCSSC---------CSCC---CCTTCTTCCEEECCSSC-----
T ss_pred hhcccCCCCEEEccCCcCCeEc---c-ccCCCCCEEECcCCC---------Ccee---ecCCCCcCCEEECCCCc-----
Confidence 5788999999999988887632 3 458999999999974 3322 26789999999998864
Q ss_pred CccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCC
Q 015585 92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC 171 (404)
Q Consensus 92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 171 (404)
+..+ . ...+++|++|+++++ .++... +..+++|+.|+++++..+.... ...+++|+.|+++++
T Consensus 118 -l~~l---~----~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 118 -LTKL---D----VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN 180 (457)
T ss_dssp -CSCC---C----CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS
T ss_pred -CCee---c----CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC
Confidence 2222 1 257889999999985 443321 4567899999999985444321 346789999999987
Q ss_pred CCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcH
Q 015585 172 RLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTD 251 (404)
Q Consensus 172 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~ 251 (404)
. +.. + .+..+++|++|+++++ .++.. .+..+++|+.|++++|.+++. . ...+++|+.|+++++. ++.
T Consensus 181 ~-l~~--l-~l~~l~~L~~L~l~~N-~l~~~---~l~~l~~L~~L~Ls~N~l~~i--p--~~~l~~L~~L~l~~N~-l~~ 247 (457)
T 3bz5_A 181 K-ITE--L-DVSQNKLLNRLNCDTN-NITKL---DLNQNIQLTFLDCSSNKLTEI--D--VTPLTQLTYFDCSVNP-LTE 247 (457)
T ss_dssp C-CCC--C-CCTTCTTCCEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSC-CSC
T ss_pred c-cce--e-ccccCCCCCEEECcCC-cCCee---ccccCCCCCEEECcCCccccc--C--ccccCCCCEEEeeCCc-CCC
Confidence 5 333 1 1667899999999885 55543 367789999999999988762 2 3467899999999886 444
Q ss_pred HHHHHHHhhcCCCCCCcc----------EEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCC--C
Q 015585 252 KGISHLLCVGGTISQSLT----------TLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP--D 319 (404)
Q Consensus 252 ~~~~~l~~~~~~~~~~L~----------~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~--~ 319 (404)
... ..+++|+ .|+++++....... ...|++|+.|++++|..++.... .. ..+. .
T Consensus 248 ~~~--------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~-~~-~~L~~L~ 313 (457)
T 3bz5_A 248 LDV--------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDC-QA-AGITELD 313 (457)
T ss_dssp CCC--------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEEC-TT-CCCSCCC
T ss_pred cCH--------HHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceecc-CC-CcceEec
Confidence 221 2344454 44444442221111 12468888888888853221000 00 0000 0
Q ss_pred cccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccC
Q 015585 320 QEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 365 (404)
Q Consensus 320 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~ 365 (404)
+.++++|+.|+++++ .++.. .+ ..+++|+.|++++|.+++
T Consensus 314 l~~~~~L~~L~L~~N-~l~~l---~l--~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNT-ELTEL---DV--SHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCTTCCEEECTTC-CCSCC---CC--TTCTTCSEEECCSSCCCB
T ss_pred hhhcccCCEEECCCC-ccccc---cc--ccCCcCcEEECCCCCCCC
Confidence 015788888888884 56552 23 358889999998888864
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=8.5e-19 Score=172.36 Aligned_cols=141 Identities=12% Similarity=0.044 Sum_probs=88.7
Q ss_pred cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHH
Q 015585 234 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEAL 313 (404)
Q Consensus 234 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 313 (404)
.+++++.++++.+. +..... ... ..++.|+.|+++++..... ........+++|+.|++++|. ++...-..+
T Consensus 443 ~l~~l~~l~ls~n~-l~~~~~-~~~----~~~~~L~~L~Ls~N~~~~~-~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f 514 (635)
T 4g8a_A 443 SLRNLIYLDISHTH-TRVAFN-GIF----NGLSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF 514 (635)
T ss_dssp TCTTCCEEECTTSC-CEECCT-TTT----TTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred cccccccccccccc-cccccc-ccc----ccchhhhhhhhhhcccccc-cCchhhhhccccCEEECCCCc-cCCcChHHH
Confidence 34556666665554 221111 111 3567899999988632211 011122357899999999995 553222222
Q ss_pred HhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccc
Q 015585 314 ARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGC 392 (404)
Q Consensus 314 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~ 392 (404)
. ++++|+.|+++++ +++......+. .+++|++|++++|.+++...+.+. ...++++ +++.+|++.|
T Consensus 515 ~-------~l~~L~~L~Ls~N-~l~~l~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~---~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 515 N-------SLSSLQVLNMSHN-NFFSLDTFPYK--CLNSLQVLDYSLNHIMTSKKQELQ---HFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp T-------TCTTCCEEECTTS-CCCBCCCGGGT--TCTTCCEEECTTSCCCBCCSSCTT---CCCTTCCEEECTTCCBCC
T ss_pred c-------CCCCCCEEECCCC-cCCCCChhHHh--CCCCCCEEECCCCcCCCCCHHHHH---hhhCcCCEEEeeCCCCcc
Confidence 2 5899999999995 67654444443 589999999999999776443322 2225677 9999999999
Q ss_pred cCC
Q 015585 393 HDG 395 (404)
Q Consensus 393 ~~~ 395 (404)
+++
T Consensus 582 ~C~ 584 (635)
T 4g8a_A 582 TCE 584 (635)
T ss_dssp SGG
T ss_pred cCC
Confidence 854
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.65 E-value=3.1e-17 Score=147.86 Aligned_cols=180 Identities=16% Similarity=0.122 Sum_probs=84.2
Q ss_pred CCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCCh--HHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCc
Q 015585 161 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIAD--TCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 238 (404)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L 238 (404)
++|+.|+++++. +.......+..+++|++|+++++ .+.. .....+..+++|++|+++++.++.... ...++|
T Consensus 121 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~----~~~~~L 194 (330)
T 1xku_A 121 KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSL 194 (330)
T ss_dssp TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS----SCCTTC
T ss_pred ccccEEECCCCc-ccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCCc----cccccC
Confidence 345555555443 22222223445555666665553 3322 112234455566666666554432100 012456
Q ss_pred CEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCC
Q 015585 239 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP 318 (404)
Q Consensus 239 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 318 (404)
++|+++++. +.......+ ..+++|++|+++++ .++......+ ..+++|+.|++++|. ++ .+...+.
T Consensus 195 ~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~-----~lp~~l~ 260 (330)
T 1xku_A 195 TELHLDGNK-ITKVDAASL-----KGLNNLAKLGLSFN-SISAVDNGSL-ANTPHLRELHLNNNK-LV-----KVPGGLA 260 (330)
T ss_dssp SEEECTTSC-CCEECTGGG-----TTCTTCCEEECCSS-CCCEECTTTG-GGSTTCCEEECCSSC-CS-----SCCTTTT
T ss_pred CEEECCCCc-CCccCHHHh-----cCCCCCCEEECCCC-cCceeChhhc-cCCCCCCEEECCCCc-Cc-----cCChhhc
Confidence 666666554 333211122 24556666666664 3332111111 235667777776664 43 1111111
Q ss_pred CcccCCCCcEEeccCCCCCCHHHHHhhhc----CCCCcccEEecCCcccc
Q 015585 319 DQEKSKQLRRLDLCNCIGLSVDSLRWVKR----PSFRGLHWLGIGQTRLA 364 (404)
Q Consensus 319 ~~~~~~~L~~L~l~~~~~i~~~~~~~l~~----~~~~~L~~L~l~~~~l~ 364 (404)
.+++|+.|++++| .++......+.. ...++|+.|++++|++.
T Consensus 261 ---~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 261 ---DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp ---TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ---cCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccc
Confidence 4667777777764 454433332211 12456777777777663
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=9.4e-17 Score=146.10 Aligned_cols=289 Identities=15% Similarity=0.081 Sum_probs=145.8
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCc
Q 015585 14 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF 93 (404)
Q Consensus 14 ~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 93 (404)
..|+.....+++++.++.. +.. -.++|++|++++| .++......+..+++|+.|+++++. +
T Consensus 28 ~~C~~~~~c~~~~~~l~~i-P~~---~~~~L~~L~l~~n---------~i~~~~~~~~~~l~~L~~L~L~~n~------l 88 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSI-PSG---LTEAVKSLDLSNN---------RITYISNSDLQRCVNLQALVLTSNG------I 88 (353)
T ss_dssp CEECTTSEEECCSTTCSSC-CTT---CCTTCCEEECTTS---------CCCEECTTTTTTCTTCCEEECTTSC------C
T ss_pred CCCCCCeEeeCCCCCcccc-ccc---ccccCcEEECCCC---------cCcccCHHHhccCCCCCEEECCCCc------c
Confidence 3445555566665555421 111 1357788888775 2333333346677778888887642 1
Q ss_pred cccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCC
Q 015585 94 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL 173 (404)
Q Consensus 94 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 173 (404)
..+....+ ..+++|++|+++++ .++... ...+..+++|++|+++++. ++..........+++|+.|+++++..
T Consensus 89 ~~~~~~~~----~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~ 161 (353)
T 2z80_A 89 NTIEEDSF----SSLGSLEHLDLSYN-YLSNLS-SSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDT 161 (353)
T ss_dssp CEECTTTT----TTCTTCCEEECCSS-CCSSCC-HHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred CccCHhhc----CCCCCCCEEECCCC-cCCcCC-HhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcc
Confidence 22222211 35567777777764 333211 1224456677777776663 21100000123455566666655432
Q ss_pred CCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHH
Q 015585 174 ITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKG 253 (404)
Q Consensus 174 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~ 253 (404)
+.......+..+++|++|+++++ .+.......+..+++|++|++++|.++.... .+...+++|+.|+++++. ++...
T Consensus 162 ~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~-l~~~~ 238 (353)
T 2z80_A 162 FTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLE-IFVDVTSSVECLELRDTD-LDTFH 238 (353)
T ss_dssp CCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHH-HHHHHTTTEEEEEEESCB-CTTCC
T ss_pred ccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchh-hhhhhcccccEEECCCCc-ccccc
Confidence 22211222334555555555553 3333333334445555555555554432211 112234455555554443 21110
Q ss_pred HHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccC
Q 015585 254 ISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCN 333 (404)
Q Consensus 254 ~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 333 (404)
. ..+. .....+.++.+++.++ .+++..+..+...+. .+++|+.|++++
T Consensus 239 ~---------------------------~~l~-~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~---~l~~L~~L~Ls~ 286 (353)
T 2z80_A 239 F---------------------------SELS-TGETNSLIKKFTFRNV-KITDESLFQVMKLLN---QISGLLELEFSR 286 (353)
T ss_dssp C---------------------------C-------CCCCCCEEEEESC-BCCHHHHHHHHHHHH---TCTTCCEEECCS
T ss_pred c---------------------------cccc-cccccchhhccccccc-cccCcchhhhHHHHh---cccCCCEEECCC
Confidence 0 0000 1123567788888777 477776666554333 588899999988
Q ss_pred CCCCCHHHHHhhhcCCCCcccEEecCCccccCC
Q 015585 334 CIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 366 (404)
Q Consensus 334 ~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~ 366 (404)
| .++......+ ..+++|++|++++|+++..
T Consensus 287 N-~l~~i~~~~~--~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 287 N-QLKSVPDGIF--DRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp S-CCCCCCTTTT--TTCTTCCEEECCSSCBCCC
T ss_pred C-CCCccCHHHH--hcCCCCCEEEeeCCCccCc
Confidence 5 6663322222 2488999999999998754
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.64 E-value=5.2e-17 Score=146.41 Aligned_cols=298 Identities=13% Similarity=0.084 Sum_probs=182.7
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 96 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 96 (404)
.+++.++++++.+... +. .-.+++++|++++|. ++......++.+++|++|+++++. +..+
T Consensus 31 c~l~~l~~~~~~l~~l-p~---~~~~~l~~L~L~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~------l~~~ 91 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKV-PK---DLPPDTALLDLQNNK---------ITEIKDGDFKNLKNLHTLILINNK------ISKI 91 (330)
T ss_dssp EETTEEECTTSCCCSC-CC---SCCTTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSSC------CCCB
T ss_pred CCCeEEEecCCCcccc-Cc---cCCCCCeEEECCCCc---------CCEeChhhhccCCCCCEEECCCCc------CCee
Confidence 3788888887665531 11 113689999999863 443333457788999999998863 2223
Q ss_pred ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585 97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 176 (404)
Q Consensus 97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 176 (404)
....+ ..+++|++|+++++ .++... ....++|+.|+++++. ++... ......+++|+.|+++++. +..
T Consensus 92 ~~~~~----~~l~~L~~L~Ls~n-~l~~l~----~~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~ 159 (330)
T 1xku_A 92 SPGAF----APLVKLERLYLSKN-QLKELP----EKMPKTLQELRVHENE-ITKVR-KSVFNGLNQMIVVELGTNP-LKS 159 (330)
T ss_dssp CTTTT----TTCTTCCEEECCSS-CCSBCC----SSCCTTCCEEECCSSC-CCBBC-HHHHTTCTTCCEEECCSSC-CCG
T ss_pred CHHHh----cCCCCCCEEECCCC-cCCccC----hhhcccccEEECCCCc-ccccC-HhHhcCCccccEEECCCCc-CCc
Confidence 22222 46789999999885 333211 0112789999999885 33221 2234578899999998875 322
Q ss_pred --HHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHH
Q 015585 177 --ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGI 254 (404)
Q Consensus 177 --~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~ 254 (404)
.....+..+++|++|+++++ .+.... . ...++|++|++++|.++......+ ..+++|++|+++++. ++....
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n-~l~~l~-~--~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~ 233 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADT-NITTIP-Q--GLPPSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNS-ISAVDN 233 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSS-CCCSCC-S--SCCTTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSC-CCEECT
T ss_pred cCcChhhccCCCCcCEEECCCC-ccccCC-c--cccccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCc-CceeCh
Confidence 11234567899999999885 444211 1 123789999999998765433222 257899999999886 544322
Q ss_pred HHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCC
Q 015585 255 SHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNC 334 (404)
Q Consensus 255 ~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 334 (404)
..+ ..+++|++|+++++ .++. +......+++|+.|++++|. ++......+...... ...+.|+.|++.++
T Consensus 234 ~~~-----~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~-~~~~~l~~l~l~~N 303 (330)
T 1xku_A 234 GSL-----ANTPHLRELHLNNN-KLVK--VPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYN-TKKASYSGVSLFSN 303 (330)
T ss_dssp TTG-----GGSTTCCEEECCSS-CCSS--CCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCC-TTSCCCSEEECCSS
T ss_pred hhc-----cCCCCCCEEECCCC-cCcc--CChhhccCCCcCEEECCCCc-CCccChhhcCCcccc-cccccccceEeecC
Confidence 222 25789999999986 5542 11112357899999999985 554333222211000 02478999999985
Q ss_pred CCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585 335 IGLSVDSLRWVKRPSFRGLHWLGIGQTR 362 (404)
Q Consensus 335 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 362 (404)
.+....+..-.-..+++|+.+++++|+
T Consensus 304 -~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 304 -PVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -SSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred -cccccccCccccccccceeEEEecccC
Confidence 444322221122358899999999874
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.62 E-value=4.4e-17 Score=148.33 Aligned_cols=212 Identities=18% Similarity=0.112 Sum_probs=137.9
Q ss_pred CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccc
Q 015585 16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 95 (404)
Q Consensus 16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 95 (404)
.++|++|+++++.++......+ ..+++|++|++++|. ++......++.+++|++|+++++. +..
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~------l~~ 114 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNG---------INTIEEDSFSSLGSLEHLDLSYNY------LSN 114 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSC---------CCEECTTTTTTCTTCCEEECCSSC------CSS
T ss_pred cccCcEEECCCCcCcccCHHHh-ccCCCCCEEECCCCc---------cCccCHhhcCCCCCCCEEECCCCc------CCc
Confidence 3689999999988875433334 358999999999973 444334457889999999998863 222
Q ss_pred cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585 96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 175 (404)
Q Consensus 96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 175 (404)
+... ....+++|++|+++++ .++.......+..+++|+.|+++++..+.... ......+++|+.|+++++. +.
T Consensus 115 ~~~~----~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~-l~ 187 (353)
T 2z80_A 115 LSSS----WFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASD-LQ 187 (353)
T ss_dssp CCHH----HHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETT-CC
T ss_pred CCHh----HhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCC-cC
Confidence 3322 2357899999999985 44321110135568999999999884333211 1123467899999999875 44
Q ss_pred HHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHH--hcCCCcCEEeecCCCCCcHH
Q 015585 176 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILA--QGNLPIMNLCLRGCKRVTDK 252 (404)
Q Consensus 176 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~--~~~~~L~~L~l~~~~~l~~~ 252 (404)
......+..+++|++|+++++ .+.......+..+++|+.|++++|.+++.....+. ...+.++.+++.++. +.+.
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~ 264 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-ITDE 264 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-CCHH
T ss_pred ccCHHHHhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-ccCc
Confidence 333345667899999999985 55544444455689999999999977653221111 123445555555443 4443
No 54
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.58 E-value=2e-14 Score=130.85 Aligned_cols=194 Identities=21% Similarity=0.210 Sum_probs=138.2
Q ss_pred CCCccEEEccCCCCCCHHHHHHhh-----CCCCCCEEeccCCCCCChHHHHhhh-CCCCCCEEEccCCccCHHHHHHHHh
Q 015585 160 PCALVEVRLLWCRLITSETVKKLA-----SSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGADITDSGLSILAQ 233 (404)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~l~~l~~ 233 (404)
.+.|+.|++++|. +++.....++ .+++|++|++++| .+++..+..+. .+++|++|++++|.+++.+...++.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 4678899999876 6776666655 2368999999885 67777776654 4578899999999998888777664
Q ss_pred ----cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHH---hCCCCceEeecCCCCCC
Q 015585 234 ----GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVT 306 (404)
Q Consensus 234 ----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~~ 306 (404)
..++|++|++++|. +++.+...++.+. ...++|++|+++++ .+++.++..+.. .+++|+.|++++|. ++
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L-~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~ 224 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGL-AGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG-AG 224 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHH-HTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHH-hcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence 35779999999886 8777665553110 24678999999886 688877666543 35789999999884 88
Q ss_pred HHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCc---ccEEe--cCCccc
Q 015585 307 DASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRG---LHWLG--IGQTRL 363 (404)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~---L~~L~--l~~~~l 363 (404)
+.+...++..+. .+++|+.|++++| .+++.+...+.....+. |+.+. +.++.+
T Consensus 225 ~~g~~~l~~~L~---~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 225 DTAALALARAAR---EHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHHHHHH---HCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHHHHHHH---hCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 888877776544 5788999999884 78888887775322223 77777 677665
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=4.7e-17 Score=146.79 Aligned_cols=296 Identities=11% Similarity=0.060 Sum_probs=182.2
Q ss_pred CCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccC
Q 015585 18 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVN 97 (404)
Q Consensus 18 ~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 97 (404)
+++.++++++.+... +.. ..++|++|++++|. ++......+..+++|++|+++++. +..+.
T Consensus 34 ~l~~l~~~~~~l~~i-p~~---~~~~l~~L~l~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~ 94 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-PKE---ISPDTTLLDLQNND---------ISELRKDDFKGLQHLYALVLVNNK------ISKIH 94 (332)
T ss_dssp ETTEEECCSSCCSSC-CSC---CCTTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCSSC------CCEEC
T ss_pred cCCEEECCCCCcccc-CCC---CCCCCeEEECCCCc---------CCccCHhHhhCCCCCcEEECCCCc------cCccC
Confidence 689999987666521 111 14689999999973 443334457889999999998863 22232
Q ss_pred hhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHH
Q 015585 98 DMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSE 177 (404)
Q Consensus 98 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 177 (404)
...+ ..+++|++|+++++ .++.... ...++|++|+++++. +.... ......+++|+.|+++++. +...
T Consensus 95 ~~~~----~~l~~L~~L~L~~n-~l~~l~~----~~~~~L~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~ 162 (332)
T 2ft3_A 95 EKAF----SPLRKLQKLYISKN-HLVEIPP----NLPSSLVELRIHDNR-IRKVP-KGVFSGLRNMNCIEMGGNP-LENS 162 (332)
T ss_dssp GGGS----TTCTTCCEEECCSS-CCCSCCS----SCCTTCCEEECCSSC-CCCCC-SGGGSSCSSCCEEECCSCC-CBGG
T ss_pred HhHh----hCcCCCCEEECCCC-cCCccCc----cccccCCEEECCCCc-cCccC-HhHhCCCccCCEEECCCCc-cccC
Confidence 2222 56789999999985 3432110 112789999999885 22111 1124578999999999875 3321
Q ss_pred H--HHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHH
Q 015585 178 T--VKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 255 (404)
Q Consensus 178 ~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~ 255 (404)
+ ...+..+ +|++|+++++ .+.... . ...++|++|++++|.++......+. .+++|++|+++++. +......
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n-~l~~l~-~--~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~-l~~~~~~ 235 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEA-KLTGIP-K--DLPETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQ-IRMIENG 235 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSS-BCSSCC-S--SSCSSCSCCBCCSSCCCCCCTTSST-TCTTCSCCBCCSSC-CCCCCTT
T ss_pred CCCcccccCC-ccCEEECcCC-CCCccC-c--cccCCCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCc-CCcCChh
Confidence 1 1223344 8999999885 444311 1 1237899999999977654322222 57899999999886 4442222
Q ss_pred HHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585 256 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 335 (404)
Q Consensus 256 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 335 (404)
.+ ..+++|++|+++++ .++.. ......+++|+.|++++|. ++......+...... ...+.|+.|++.+++
T Consensus 236 ~~-----~~l~~L~~L~L~~N-~l~~l--p~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~-~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 236 SL-----SFLPTLRELHLDNN-KLSRV--PAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFG-VKRAYYNGISLFNNP 305 (332)
T ss_dssp GG-----GGCTTCCEEECCSS-CCCBC--CTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCC-SSSCCBSEEECCSSS
T ss_pred Hh-----hCCCCCCEEECCCC-cCeec--ChhhhcCccCCEEECCCCC-CCccChhHccccccc-cccccccceEeecCc
Confidence 22 36789999999986 55521 1112467999999999985 665433333321110 025779999999964
Q ss_pred CCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585 336 GLSVDSLRWVKRPSFRGLHWLGIGQTR 362 (404)
Q Consensus 336 ~i~~~~~~~l~~~~~~~L~~L~l~~~~ 362 (404)
++...+..-....+++|+.+++++|.
T Consensus 306 -~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 306 -VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -ccccccCcccccccchhhhhhccccc
Confidence 44322222222358899999999875
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.58 E-value=6.9e-17 Score=151.47 Aligned_cols=186 Identities=15% Similarity=0.094 Sum_probs=85.0
Q ss_pred hCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcC
Q 015585 183 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGG 262 (404)
Q Consensus 183 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 262 (404)
..+++|++|+++++ .+.......+..+++|++|++++|.++...... ...+++|++|+++++..+.......+
T Consensus 109 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~~~~----- 181 (440)
T 3zyj_A 109 NGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA-FNRIPSLRRLDLGELKRLSYISEGAF----- 181 (440)
T ss_dssp TTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTT-TTTCTTCCEEECCCCTTCCEECTTTT-----
T ss_pred cCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHH-hhhCcccCEeCCCCCCCcceeCcchh-----
Confidence 34445555555442 333222223344455555555554433211111 11345555555554432322111111
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHH
Q 015585 263 TISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 342 (404)
Q Consensus 263 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 342 (404)
..+++|++|+++++ .++... . ...+++|+.|++++|. ++......+. .+++|+.|+++++ .++....
T Consensus 182 ~~l~~L~~L~L~~n-~l~~~~--~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~n-~l~~~~~ 248 (440)
T 3zyj_A 182 EGLSNLRYLNLAMC-NLREIP--N-LTPLIKLDELDLSGNH-LSAIRPGSFQ-------GLMHLQKLWMIQS-QIQVIER 248 (440)
T ss_dssp TTCSSCCEEECTTS-CCSSCC--C-CTTCSSCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECTTC-CCCEECT
T ss_pred hcccccCeecCCCC-cCcccc--c-cCCCcccCEEECCCCc-cCccChhhhc-------cCccCCEEECCCC-ceeEECh
Confidence 24455666666554 332111 0 1234566666666663 4322111222 3666777776663 4544333
Q ss_pred HhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccccC
Q 015585 343 RWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD 394 (404)
Q Consensus 343 ~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~ 394 (404)
..+. .+++|+.|++++|.++...... ...+++++ +++.+|++.|++
T Consensus 249 ~~~~--~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 249 NAFD--NLQSLVEINLAHNNLTLLPHDL----FTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TSST--TCTTCCEEECTTSCCCCCCTTT----TSSCTTCCEEECCSSCEECSS
T ss_pred hhhc--CCCCCCEEECCCCCCCccChhH----hccccCCCEEEcCCCCccCCC
Confidence 3332 3666777777777665442221 23456665 777777766664
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.57 E-value=1.1e-16 Score=150.71 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=42.0
Q ss_pred CCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHH
Q 015585 291 GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPV 370 (404)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~ 370 (404)
+++|+.|++++|. ++......+. .+++|+.|+++++ .++......+. .+++|+.|++++|.++......
T Consensus 217 l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~n-~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 217 LVGLEELEMSGNH-FPEIRPGSFH-------GLSSLKKLWVMNS-QVSLIERNAFD--GLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp CTTCCEEECTTSC-CSEECGGGGT-------TCTTCCEEECTTS-CCCEECTTTTT--TCTTCCEEECCSSCCSCCCTTS
T ss_pred cccccEEECcCCc-CcccCccccc-------CccCCCEEEeCCC-cCceECHHHhc--CCCCCCEEECCCCcCCccChHH
Confidence 4555566665553 3322111122 3555666666653 44432222222 3556666666666654432211
Q ss_pred HHHHHhcCCccE-EEeccccccccC
Q 015585 371 ITEIHNERPWLT-FCLDGCEIGCHD 394 (404)
Q Consensus 371 ~~~~~~~~~~l~-l~~~~~~~~~~~ 394 (404)
...+++++ +++.+|++.|+.
T Consensus 286 ----~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 286 ----FTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp ----STTCTTCCEEECCSSCEECST
T ss_pred ----hccccCCCEEEccCCCcCCCC
Confidence 12345555 666666666653
No 58
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.57 E-value=4.1e-14 Score=128.82 Aligned_cols=195 Identities=19% Similarity=0.239 Sum_probs=140.5
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHH---c-CCCCccEEEccCCCCCCHHHHHHhh-CCCCCCEEeccCCCCCChHHHHhhh
Q 015585 134 CHSLKKFEVRSASFLSDLAFHDLT---G-VPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSIS 208 (404)
Q Consensus 134 ~~~L~~L~l~~~~~~~~~~l~~~~---~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~ 208 (404)
.++|+.|+++++. ++......+. . ..++|++|++++|. +++.++..+. .+++|++|++++| .+++.+...++
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 4789999999986 6665544432 2 23689999999875 7887777776 4678999999985 78887776653
Q ss_pred -----CCCCCCEEEccCCccCHHHHHHHHh---cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCC
Q 015585 209 -----CLRKLTALNLTGADITDSGLSILAQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGIS 280 (404)
Q Consensus 209 -----~~~~L~~L~l~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~ 280 (404)
..++|++|++++|.+++.+...++. .+++|++|++++|. +++.+...+..+ -...++|++|++++| .++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSS-CCC
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCC-CCC
Confidence 4688999999999998887776653 57889999999887 888776554321 134568999999996 888
Q ss_pred HHHHHHHHH---hCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCC--CcEEe--ccCCCCCCHH
Q 015585 281 DDGILTIAA---AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQ--LRRLD--LCNCIGLSVD 340 (404)
Q Consensus 281 ~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~--L~~L~--l~~~~~i~~~ 340 (404)
+.+...+.. .+++|+.|++++|. +++.+...+..... ... |+.+. +.. +.++..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~----~~~~~L~~l~~ll~~-~~~~~~ 285 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLGG----AAEGGARVVVSLTEG-TAVSEY 285 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHCC----------CEEECCCC-----CHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHHhc----CCCccchhhHhhhcC-CccCHH
Confidence 887666544 46899999999995 99999988887433 221 67776 544 344443
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.54 E-value=2.7e-17 Score=146.94 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=30.1
Q ss_pred CCCcEEeccCCCCCh--HHHHHHHhhCCCccEEeecC-CCCCCcccccccchhhhhhhcCCCCCceEEeccc
Q 015585 17 FNLRSLSLVLDVITD--ELLITITASLPFLVELDLED-RPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC 85 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~--~~~~~i~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 85 (404)
.++++|+|+++.+.. ..+..+. .+++|++|++++ + .+.......++.+++|++|+++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n---------~l~~~~p~~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGIN---------NLVGPIPPAIAKLTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEET---------TEESCCCGGGGGCTTCSEEEEEEE
T ss_pred ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCC---------cccccCChhHhcCCCCCEEECcCC
Confidence 456666666655543 2223333 366666666663 3 122222333556666666666554
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=3.6e-16 Score=139.97 Aligned_cols=237 Identities=17% Similarity=0.089 Sum_probs=124.3
Q ss_pred CCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccC
Q 015585 18 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVN 97 (404)
Q Consensus 18 ~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 97 (404)
.++..+++.+.+. ..+..+...+++|++|++++| .++......+..+++|++|+++++. +....
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~ 74 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGN---------PLSQISAADLAPFTKLELLNLSSNV------LYETL 74 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTS---------CCCCCCHHHHTTCTTCCEEECTTSC------CEEEE
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCC---------ccCcCCHHHhhCCCcCCEEECCCCc------CCcch
Confidence 3444555555443 344555556778888988886 3444344456788888888888753 11111
Q ss_pred hhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHH
Q 015585 98 DMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSE 177 (404)
Q Consensus 98 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 177 (404)
+ ...+++|+.|+++++ .++. +...++|+.|+++++. ++... ...+++|+.|+++++. +...
T Consensus 75 ~------~~~l~~L~~L~Ls~n-~l~~------l~~~~~L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~N~-l~~~ 135 (317)
T 3o53_A 75 D------LESLSTLRTLDLNNN-YVQE------LLVGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLANNK-ITML 135 (317)
T ss_dssp E------ETTCTTCCEEECCSS-EEEE------EEECTTCCEEECCSSC-CSEEE----ECCCSSCEEEECCSSC-CCSG
T ss_pred h------hhhcCCCCEEECcCC-cccc------ccCCCCcCEEECCCCc-cCCcC----ccccCCCCEEECCCCC-CCCc
Confidence 1 256778888888875 3321 1123677777777764 22111 1235667777776654 3322
Q ss_pred HHHHhhCCCCCCEEeccCCCCCChHHHHhh-hCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHH
Q 015585 178 TVKKLASSRNLEVLDLGGCKSIADTCLRSI-SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH 256 (404)
Q Consensus 178 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 256 (404)
....+..+++|++|+++++ .+.......+ ..+++|++|++++|.++.. .... .+++|++|++++|. ++.....
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~-~l~~L~~L~Ls~N~-l~~l~~~- 209 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQV-VFAKLKTLDLSSNK-LAFMGPE- 209 (317)
T ss_dssp GGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCC-CCTTCCEEECCSSC-CCEECGG-
T ss_pred cchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc--cccc-ccccCCEEECCCCc-CCcchhh-
Confidence 2222335566777777663 4444333333 2456677777766655432 0000 24566666666554 3321111
Q ss_pred HHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCC
Q 015585 257 LLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 303 (404)
Q Consensus 257 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 303 (404)
+ ..+++|++|+++++ .++.. ......+++|+.|++++|+
T Consensus 210 ~-----~~l~~L~~L~L~~N-~l~~l--~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 210 F-----QSAAGVTWISLRNN-KLVLI--EKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp G-----GGGTTCSEEECTTS-CCCEE--CTTCCCCTTCCEEECTTCC
T ss_pred h-----cccCcccEEECcCC-cccch--hhHhhcCCCCCEEEccCCC
Confidence 1 23455666666554 33320 0011234555555555554
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=8.6e-15 Score=141.70 Aligned_cols=267 Identities=15% Similarity=0.074 Sum_probs=176.4
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 96 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 96 (404)
.+++.|+++++.++. .+..+ .++|++|++++|.. +. +.. .+++|++|+++++. +..+
T Consensus 40 ~~l~~L~ls~n~L~~-lp~~l---~~~L~~L~L~~N~l---------~~--lp~--~l~~L~~L~Ls~N~------l~~l 96 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-LPDCL---PAHITTLVIPDNNL---------TS--LPA--LPPELRTLEVSGNQ------LTSL 96 (622)
T ss_dssp HCCCEEECCSSCCSC-CCSCC---CTTCSEEEECSCCC---------SC--CCC--CCTTCCEEEECSCC------CSCC
T ss_pred CCCcEEEecCCCcCc-cChhh---CCCCcEEEecCCCC---------CC--CCC--cCCCCCEEEcCCCc------CCcC
Confidence 368889998877762 12111 36899999998732 21 111 56889999998863 2223
Q ss_pred ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585 97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 176 (404)
Q Consensus 97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 176 (404)
.. .+++|++|+++++ .++.. ...+++|+.|+++++. ++. +....++|+.|++++|. +..
T Consensus 97 p~--------~l~~L~~L~Ls~N-~l~~l-----~~~l~~L~~L~L~~N~-l~~-----lp~~l~~L~~L~Ls~N~-l~~ 155 (622)
T 3g06_A 97 PV--------LPPGLLELSIFSN-PLTHL-----PALPSGLCKLWIFGNQ-LTS-----LPVLPPGLQELSVSDNQ-LAS 155 (622)
T ss_dssp CC--------CCTTCCEEEECSC-CCCCC-----CCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSC
T ss_pred CC--------CCCCCCEEECcCC-cCCCC-----CCCCCCcCEEECCCCC-CCc-----CCCCCCCCCEEECcCCc-CCC
Confidence 22 5688999999885 33321 1145789999998885 321 12245889999998875 321
Q ss_pred HHHHHhh-CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHH
Q 015585 177 ETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 255 (404)
Q Consensus 177 ~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~ 255 (404)
+. ..++|+.|+++++ .++... ..+++|+.|++++|.++. +....++|+.|.+++|. ++.
T Consensus 156 -----l~~~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~-l~~---- 215 (622)
T 3g06_A 156 -----LPALPSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNR-LTS---- 215 (622)
T ss_dssp -----CCCCCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC-CSS----
T ss_pred -----cCCccCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCC-----CCCccchhhEEECcCCc-ccc----
Confidence 22 4578999999884 554321 456889999999987764 22245789999998876 432
Q ss_pred HHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585 256 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 335 (404)
Q Consensus 256 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 335 (404)
+. ..+++|++|+++++ .++... ..+++|+.|++++|. ++. +.. .+++|+.|++++|
T Consensus 216 -l~----~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N~-L~~-----lp~------~~~~L~~L~Ls~N- 271 (622)
T 3g06_A 216 -LP----ALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGNR-LTS-----LPM------LPSGLLSLSVYRN- 271 (622)
T ss_dssp -CC----CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSC-----CCC------CCTTCCEEECCSS-
T ss_pred -cC----CCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCCC-CCc-----CCc------ccccCcEEeCCCC-
Confidence 11 24578999999986 555311 356899999999985 542 222 3788999999995
Q ss_pred CCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHH
Q 015585 336 GLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEI 374 (404)
Q Consensus 336 ~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 374 (404)
.++.. ...+. .+++|+.|++++|.+++.....+..+
T Consensus 272 ~L~~l-p~~l~--~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 272 QLTRL-PESLI--HLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCCSC-CGGGG--GSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCCcC-CHHHh--hccccCEEEecCCCCCCcCHHHHHhc
Confidence 66632 12333 48899999999999865444444444
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.53 E-value=1.3e-15 Score=142.69 Aligned_cols=227 Identities=15% Similarity=0.163 Sum_probs=107.1
Q ss_pred CCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCC
Q 015585 42 PFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK 121 (404)
Q Consensus 42 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 121 (404)
+++++|++++| .++......+..+++|+.|+++++. +..+....+ ..+++|++|+++++ .
T Consensus 64 ~~l~~L~L~~n---------~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~----~~l~~L~~L~L~~n-~ 123 (440)
T 3zyj_A 64 TNTRLLNLHEN---------QIQIIKVNSFKHLRHLEILQLSRNH------IRTIEIGAF----NGLANLNTLELFDN-R 123 (440)
T ss_dssp TTCSEEECCSC---------CCCEECTTTTSSCSSCCEEECCSSC------CCEECGGGG----TTCSSCCEEECCSS-C
T ss_pred CCCcEEEccCC---------cCCeeCHHHhhCCCCCCEEECCCCc------CCccChhhc----cCCccCCEEECCCC-c
Confidence 45666666664 2333233345556666666665542 122222211 34556666666653 2
Q ss_pred CCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCCh
Q 015585 122 VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIAD 201 (404)
Q Consensus 122 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 201 (404)
++... ...+..+++|+.|+++++. +.... ...+..+++|+.|+++++..+.......+..+++|++|+++++ .+..
T Consensus 124 l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~ 199 (440)
T 3zyj_A 124 LTTIP-NGAFVYLSKLKELWLRNNP-IESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLRE 199 (440)
T ss_dssp CSSCC-TTTSCSCSSCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSS
T ss_pred CCeeC-HhHhhccccCceeeCCCCc-ccccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcc
Confidence 22111 0113344566666666653 21100 0112345666666666544333222223445666666666663 3331
Q ss_pred HHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCH
Q 015585 202 TCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD 281 (404)
Q Consensus 202 ~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~ 281 (404)
+..+..+++|+.|++++|.++......+ ..+++|+.|.++++. +.......+ ..+++|++|+++++ .++.
T Consensus 200 --~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~-----~~l~~L~~L~L~~N-~l~~ 269 (440)
T 3zyj_A 200 --IPNLTPLIKLDELDLSGNHLSAIRPGSF-QGLMHLQKLWMIQSQ-IQVIERNAF-----DNLQSLVEINLAHN-NLTL 269 (440)
T ss_dssp --CCCCTTCSSCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTCC-CCEECTTSS-----TTCTTCCEEECTTS-CCCC
T ss_pred --ccccCCCcccCEEECCCCccCccChhhh-ccCccCCEEECCCCc-eeEEChhhh-----cCCCCCCEEECCCC-CCCc
Confidence 2234556666666666665543222111 235666666666654 333221111 24566667776664 4432
Q ss_pred HHHHHHHHhCCCCceEeecCCC
Q 015585 282 DGILTIAAAGIGIIDLCVRSCF 303 (404)
Q Consensus 282 ~~~~~l~~~~~~L~~L~l~~~~ 303 (404)
.... ....+++|+.|++++|+
T Consensus 270 ~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 270 LPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCTT-TTSSCTTCCEEECCSSC
T ss_pred cChh-HhccccCCCEEEcCCCC
Confidence 1111 11235666777776655
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.52 E-value=2.1e-15 Score=141.84 Aligned_cols=227 Identities=16% Similarity=0.160 Sum_probs=101.6
Q ss_pred CCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCC
Q 015585 42 PFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK 121 (404)
Q Consensus 42 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 121 (404)
+++++|++++| .++......+..+++|+.|+++++. +..+....+ ..+++|++|+++++ .
T Consensus 75 ~~l~~L~L~~n---------~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~----~~l~~L~~L~L~~n-~ 134 (452)
T 3zyi_A 75 SNTRYLNLMEN---------NIQMIQADTFRHLHHLEVLQLGRNS------IRQIEVGAF----NGLASLNTLELFDN-W 134 (452)
T ss_dssp TTCSEEECCSS---------CCCEECTTTTTTCTTCCEEECCSSC------CCEECTTTT----TTCTTCCEEECCSS-C
T ss_pred CCccEEECcCC---------cCceECHHHcCCCCCCCEEECCCCc------cCCcChhhc----cCcccCCEEECCCC-c
Confidence 35566666554 2222222334555566666665532 111211111 34455666666553 2
Q ss_pred CCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCCh
Q 015585 122 VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIAD 201 (404)
Q Consensus 122 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 201 (404)
++... ...+..+++|+.|+++++. +.... ...+..+++|+.|+++++..+.......+..+++|++|+++++ .+..
T Consensus 135 l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~ 210 (452)
T 3zyi_A 135 LTVIP-SGAFEYLSKLRELWLRNNP-IESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKD 210 (452)
T ss_dssp CSBCC-TTTSSSCTTCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSS
T ss_pred CCccC-hhhhcccCCCCEEECCCCC-cceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccc
Confidence 22110 0112334566666666553 21100 0112345566666666544333222223345566666666653 3332
Q ss_pred HHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCH
Q 015585 202 TCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD 281 (404)
Q Consensus 202 ~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~ 281 (404)
+..+..+++|+.|++++|.++......+ ..+++|+.|+++++. +.......+ ..+++|+.|+++++ .++.
T Consensus 211 --~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~-----~~l~~L~~L~L~~N-~l~~ 280 (452)
T 3zyi_A 211 --MPNLTPLVGLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQ-VSLIERNAF-----DGLASLVELNLAHN-NLSS 280 (452)
T ss_dssp --CCCCTTCTTCCEEECTTSCCSEECGGGG-TTCTTCCEEECTTSC-CCEECTTTT-----TTCTTCCEEECCSS-CCSC
T ss_pred --cccccccccccEEECcCCcCcccCcccc-cCccCCCEEEeCCCc-CceECHHHh-----cCCCCCCEEECCCC-cCCc
Confidence 2234455666666666665543222111 235566666666554 332211111 24556666666664 3332
Q ss_pred HHHHHHHHhCCCCceEeecCCC
Q 015585 282 DGILTIAAAGIGIIDLCVRSCF 303 (404)
Q Consensus 282 ~~~~~l~~~~~~L~~L~l~~~~ 303 (404)
.... ....+++|+.|++++|+
T Consensus 281 ~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 281 LPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCTT-SSTTCTTCCEEECCSSC
T ss_pred cChH-HhccccCCCEEEccCCC
Confidence 1111 11234666666666654
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.51 E-value=7.8e-16 Score=137.78 Aligned_cols=242 Identities=19% Similarity=0.183 Sum_probs=167.9
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585 13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT 92 (404)
Q Consensus 13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 92 (404)
+..+++|++|+++++.+.......+. .+++|++|++++|. ++. ...+..+++|++|+++++.
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~---------l~~--~~~~~~l~~L~~L~Ls~n~------ 91 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNV---------LYE--TLDLESLSTLRTLDLNNNY------ 91 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTSC---------CEE--EEEETTCTTCCEEECCSSE------
T ss_pred hccCCCCCEEECcCCccCcCCHHHhh-CCCcCCEEECCCCc---------CCc--chhhhhcCCCCEEECcCCc------
Confidence 45677999999999888865555554 59999999999973 322 1227789999999999863
Q ss_pred ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585 93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 172 (404)
Q Consensus 93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 172 (404)
+... ...++|+.|+++++ .++... ...+++|+.|+++++. ++... ......+++|+.|+++++.
T Consensus 92 ---l~~l------~~~~~L~~L~l~~n-~l~~~~----~~~~~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 92 ---VQEL------LVGPSIETLHAANN-NISRVS----CSRGQGKKNIYLANNK-ITMLR-DLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp ---EEEE------EECTTCCEEECCSS-CCSEEE----ECCCSSCEEEECCSSC-CCSGG-GBCTGGGSSEEEEECTTSC
T ss_pred ---cccc------cCCCCcCEEECCCC-ccCCcC----ccccCCCCEEECCCCC-CCCcc-chhhhccCCCCEEECCCCC
Confidence 2221 13489999999985 443321 1236899999999996 33211 1122357899999999975
Q ss_pred CCCHHHHHHhh-CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcH
Q 015585 173 LITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTD 251 (404)
Q Consensus 173 ~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~ 251 (404)
+.......+. .+++|++|+++++ .+... .....+++|+.|++++|.++..... ...+++|++|++++|. ++.
T Consensus 156 -l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~L~~L~L~~N~-l~~ 228 (317)
T 3o53_A 156 -IDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNK-LVL 228 (317)
T ss_dssp -CCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSC-CCE
T ss_pred -CCcccHHHHhhccCcCCEEECCCC-cCccc--ccccccccCCEEECCCCcCCcchhh--hcccCcccEEECcCCc-ccc
Confidence 4443333443 6899999999995 55433 3334589999999999987743221 3357999999999986 553
Q ss_pred HHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCC
Q 015585 252 KGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSC 302 (404)
Q Consensus 252 ~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 302 (404)
. .... ..+++|+.|+++++ .+...........+++|+.|++.++
T Consensus 229 l--~~~~----~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 229 I--EKAL----RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp E--CTTC----CCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred h--hhHh----hcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCc
Confidence 1 1112 46789999999996 6664455555566778888777644
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.51 E-value=2e-15 Score=133.06 Aligned_cols=209 Identities=16% Similarity=0.087 Sum_probs=134.4
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCC
Q 015585 134 CHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKL 213 (404)
Q Consensus 134 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 213 (404)
.++|+.|+++++. ++... ......+++|+.|+++++. +.......+..+++|++|+++++..+.......+..+++|
T Consensus 31 ~~~l~~L~l~~n~-i~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVP-AASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp CTTCSEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCc-CCccC-HHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 3689999999885 33211 1123467889999998864 4433334566788999999988533555445566778899
Q ss_pred CEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCC
Q 015585 214 TALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIG 293 (404)
Q Consensus 214 ~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 293 (404)
++|++++|.++...... ...+++|++|+++++. +.......+ ..+++|++|+++++ .++...... ...+++
T Consensus 108 ~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~ 178 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNA-LQALPDDTF-----RDLGNLTHLFLHGN-RISSVPERA-FRGLHS 178 (285)
T ss_dssp CEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCEECTTT-TTTCTT
T ss_pred CEEECCCCcCCEECHhH-hhCCcCCCEEECCCCc-ccccCHhHh-----ccCCCccEEECCCC-cccccCHHH-hcCccc
Confidence 99999988776432221 2357889999998876 433221112 35678888888885 454322111 124678
Q ss_pred CceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccC
Q 015585 294 IIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 365 (404)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~ 365 (404)
|+.|++++|. +++.....+. .+++|+.|+++++ .++......+. .+++|+.|++++|++..
T Consensus 179 L~~L~l~~n~-l~~~~~~~~~-------~l~~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 179 LDRLLLHQNR-VAHVHPHAFR-------DLGRLMTLYLFAN-NLSALPTEALA--PLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCEEECCSSC-CCEECTTTTT-------TCTTCCEEECCSS-CCSCCCHHHHT--TCTTCCEEECCSSCEEC
T ss_pred cCEEECCCCc-ccccCHhHcc-------CcccccEeeCCCC-cCCcCCHHHcc--cCcccCEEeccCCCccC
Confidence 8888888885 5433222232 4788888888884 56654444443 47888888888888764
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.50 E-value=5.1e-14 Score=132.02 Aligned_cols=116 Identities=18% Similarity=0.151 Sum_probs=51.2
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCC
Q 015585 109 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNL 188 (404)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 188 (404)
++|++|+++++ .++. +.. +..+++|+.|+++++. ++. +....++|+.|+++++. +. .+..+..+++|
T Consensus 173 ~~L~~L~L~~n-~l~~--l~~-~~~l~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~l~~n~-l~--~lp~~~~l~~L 239 (454)
T 1jl5_A 173 PSLEFIAAGNN-QLEE--LPE-LQNLPFLTAIYADNNS-LKK-----LPDLPLSLESIVAGNNI-LE--ELPELQNLPFL 239 (454)
T ss_dssp TTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSSC-CSS-----CCCCCTTCCEEECCSSC-CS--SCCCCTTCTTC
T ss_pred ccccEEECcCC-cCCc--Ccc-ccCCCCCCEEECCCCc-CCc-----CCCCcCcccEEECcCCc-CC--cccccCCCCCC
Confidence 35556665553 2221 111 3445566666665553 111 01122456666665553 22 11124455666
Q ss_pred CEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585 189 EVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 247 (404)
Q Consensus 189 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 247 (404)
++|+++++ .+.. +.. ..++|+.|++++|.++. +....++|++|++++|.
T Consensus 240 ~~L~l~~N-~l~~--l~~--~~~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 240 TTIYADNN-LLKT--LPD--LPPSLEALNVRDNYLTD-----LPELPQSLTFLDVSENI 288 (454)
T ss_dssp CEEECCSS-CCSS--CCS--CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC
T ss_pred CEEECCCC-cCCc--ccc--cccccCEEECCCCcccc-----cCcccCcCCEEECcCCc
Confidence 66666553 3321 110 12455555555554432 11123455555555554
No 67
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.50 E-value=6.8e-16 Score=139.16 Aligned_cols=269 Identities=15% Similarity=0.090 Sum_probs=176.4
Q ss_pred CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccc
Q 015585 16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 95 (404)
Q Consensus 16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 95 (404)
.++|++|+++++.+.......+ ..+++|++|++++| .++......++.+++|++|+++++. +..
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 116 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNN---------KISKIHEKAFSPLRKLQKLYISKNH------LVE 116 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSS---------CCCEECGGGSTTCTTCCEEECCSSC------CCS
T ss_pred CCCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCC---------ccCccCHhHhhCcCCCCEEECCCCc------CCc
Confidence 4789999999988875433334 35899999999997 3444444567899999999998864 222
Q ss_pred cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHH-HHHHcCCCCccEEEccCCCCC
Q 015585 96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAF-HDLTGVPCALVEVRLLWCRLI 174 (404)
Q Consensus 96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~ 174 (404)
+... ..++|++|+++++ .++... ...+..+++|+.|+++++. ++.... ......+ +|+.|+++++. +
T Consensus 117 l~~~-------~~~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~-l 184 (332)
T 2ft3_A 117 IPPN-------LPSSLVELRIHDN-RIRKVP-KGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAK-L 184 (332)
T ss_dssp CCSS-------CCTTCCEEECCSS-CCCCCC-SGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSB-C
T ss_pred cCcc-------ccccCCEEECCCC-ccCccC-HhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCC-C
Confidence 3221 2279999999985 443211 1124568999999999986 322111 1122233 89999998875 3
Q ss_pred CHHHHHHhh--CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585 175 TSETVKKLA--SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 252 (404)
Q Consensus 175 ~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 252 (404)
.. +. ..++|++|+++++ .+.......+..+++|+.|++++|.++......+ ..+++|++|++++|. ++..
T Consensus 185 ~~-----l~~~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l 256 (332)
T 2ft3_A 185 TG-----IPKDLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNK-LSRV 256 (332)
T ss_dssp SS-----CCSSSCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSC-CCBC
T ss_pred Cc-----cCccccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCc-Ceec
Confidence 22 22 2478999999984 6666555667788999999999997765322222 358999999999886 5421
Q ss_pred HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHh-----CCCCceEeecCCCCCCHHHH--HHHHhhCCCcccCCC
Q 015585 253 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA-----GIGIIDLCVRSCFYVTDASV--EALARKQPDQEKSKQ 325 (404)
Q Consensus 253 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~-----~~~L~~L~l~~~~~~~~~~~--~~l~~~~~~~~~~~~ 325 (404)
.... ..+++|++|+++++ .++..+...+... .+.|+.|++.+|+ +....+ ..+. .+++
T Consensus 257 --p~~l----~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~-------~l~~ 321 (332)
T 2ft3_A 257 --PAGL----PDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFR-------CVTD 321 (332)
T ss_dssp --CTTG----GGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGT-------TBCC
T ss_pred --Chhh----hcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccCccccc-------ccch
Confidence 1112 36789999999985 5654333222211 4678999999997 432111 1222 5889
Q ss_pred CcEEeccCCC
Q 015585 326 LRRLDLCNCI 335 (404)
Q Consensus 326 L~~L~l~~~~ 335 (404)
|+.++++++.
T Consensus 322 L~~l~l~~n~ 331 (332)
T 2ft3_A 322 RLAIQFGNYK 331 (332)
T ss_dssp STTEEC----
T ss_pred hhhhhccccc
Confidence 9999998863
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.49 E-value=1.5e-16 Score=141.86 Aligned_cols=258 Identities=15% Similarity=0.130 Sum_probs=162.6
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHH-HHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCC
Q 015585 109 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLA-FHDLTGVPCALVEVRLLWCRLITSETVKKLASSRN 187 (404)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 187 (404)
++|++|+++++ .++... ...+..+++|+.|+++++. ++... .......+++|+.|+++++. +.. ....+..+++
T Consensus 28 ~~l~~L~L~~n-~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~-l~~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VIT-MSSNFLGLEQ 102 (306)
T ss_dssp TTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEE-EEEEEETCTT
T ss_pred CCCCEEECCCC-ccCccC-HhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-ccc-ChhhcCCCCC
Confidence 68999999985 443211 1224677999999999986 33211 01122267999999999875 221 1112457899
Q ss_pred CCEEeccCCCCCChHH-HHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCC
Q 015585 188 LEVLDLGGCKSIADTC-LRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQ 266 (404)
Q Consensus 188 L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~ 266 (404)
|++|+++++ .+.... ...+..+++|++|++++|.++...... ...+++|++|+++++. +....+.... ..++
T Consensus 103 L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~----~~l~ 175 (306)
T 2z66_A 103 LEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNS-FQENFLPDIF----TELR 175 (306)
T ss_dssp CCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCE-EGGGEECSCC----TTCT
T ss_pred CCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCc-cccccchhHH----hhCc
Confidence 999999985 444332 245678899999999998765432222 2357899999999886 4432111222 4678
Q ss_pred CccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhh
Q 015585 267 SLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK 346 (404)
Q Consensus 267 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~ 346 (404)
+|++|+++++ .++......+ ..+++|+.|++++|. ++......+. .+++|+.|++++| .++......+.
T Consensus 176 ~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~~ 244 (306)
T 2z66_A 176 NLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHNN-FFSLDTFPYK-------CLNSLQVLDYSLN-HIMTSKKQELQ 244 (306)
T ss_dssp TCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTSC-CSBCCSGGGT-------TCTTCCEEECTTS-CCCBCSSSSCC
T ss_pred CCCEEECCCC-CcCCcCHHHh-cCCCCCCEEECCCCc-cCccChhhcc-------CcccCCEeECCCC-CCcccCHHHHH
Confidence 9999999986 5554222222 356899999999985 5432222222 5889999999995 66654443343
Q ss_pred cCCC-CcccEEecCCccccCC-ChHHHHHHHhcCCccEEEecccccccc
Q 015585 347 RPSF-RGLHWLGIGQTRLASK-GNPVITEIHNERPWLTFCLDGCEIGCH 393 (404)
Q Consensus 347 ~~~~-~~L~~L~l~~~~l~~~-~~~~~~~~~~~~~~l~l~~~~~~~~~~ 393 (404)
.+ ++|++|++++|.++.. ....+..+.+..+.+ .+..+...|.
T Consensus 245 --~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~--~~~~~~~~C~ 289 (306)
T 2z66_A 245 --HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL--LVEVERMECA 289 (306)
T ss_dssp --CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGG--BSCGGGCBEE
T ss_pred --hhhccCCEEEccCCCeecccChHHHHHHHHhhhhh--hccccccccC
Confidence 35 4899999999998753 223334444444443 2334455554
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.48 E-value=1.5e-14 Score=127.39 Aligned_cols=204 Identities=18% Similarity=0.143 Sum_probs=101.5
Q ss_pred CCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCC
Q 015585 42 PFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK 121 (404)
Q Consensus 42 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 121 (404)
++|++|+++++ .++......+..+++|++|+++++. +..+....+ ..+++|++|+++++..
T Consensus 32 ~~l~~L~l~~n---------~i~~~~~~~~~~~~~L~~L~l~~n~------l~~~~~~~~----~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 32 AASQRIFLHGN---------RISHVPAASFRACRNLTILWLHSNV------LARIDAAAF----TGLALLEQLDLSDNAQ 92 (285)
T ss_dssp TTCSEEECTTS---------CCCEECTTTTTTCTTCCEEECCSSC------CCEECTTTT----TTCTTCCEEECCSCTT
T ss_pred CCceEEEeeCC---------cCCccCHHHcccCCCCCEEECCCCc------cceeCHhhc----CCccCCCEEeCCCCCC
Confidence 45666666654 2222222334555666666665532 111211111 3455666666665421
Q ss_pred CCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCCh
Q 015585 122 VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIAD 201 (404)
Q Consensus 122 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 201 (404)
++.... ..+..+++|+.|+++++.. +... ......+++|+.|+++++. +.......+..+++|++|+++++ .++.
T Consensus 93 l~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~ 167 (285)
T 1ozn_A 93 LRSVDP-ATFHGLGRLHTLHLDRCGL-QELG-PGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISS 167 (285)
T ss_dssp CCCCCT-TTTTTCTTCCEEECTTSCC-CCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCE
T ss_pred ccccCH-HHhcCCcCCCEEECCCCcC-CEEC-HhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccc
Confidence 222111 1133456666666666531 1100 1122345667777776654 22222223445677777777763 4544
Q ss_pred HHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCC
Q 015585 202 TCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 276 (404)
Q Consensus 202 ~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~ 276 (404)
.....+..+++|+.|++++|.+++.....+. .+++|+.|+++++. ++......+ ..+++|++|+++++
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANN-LSALPTEAL-----APLRALQYLRLNDN 235 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSC-CSCCCHHHH-----TTCTTCCEEECCSS
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHcc-CcccccEeeCCCCc-CCcCCHHHc-----ccCcccCEEeccCC
Confidence 3333455667777777777766543222222 35677777777765 443322222 25667777777775
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.48 E-value=4.1e-13 Score=125.85 Aligned_cols=239 Identities=17% Similarity=0.083 Sum_probs=126.6
Q ss_pred CCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHH
Q 015585 75 HHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFH 154 (404)
Q Consensus 75 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~ 154 (404)
++|++|+++++. +..+. . ...+++|++|+++++ .++. +. ...++|+.|+++++. ++. +.
T Consensus 131 ~~L~~L~L~~n~------l~~lp-----~-~~~l~~L~~L~l~~N-~l~~--lp---~~~~~L~~L~L~~n~-l~~--l~ 189 (454)
T 1jl5_A 131 PLLEYLGVSNNQ------LEKLP-----E-LQNSSFLKIIDVDNN-SLKK--LP---DLPPSLEFIAAGNNQ-LEE--LP 189 (454)
T ss_dssp TTCCEEECCSSC------CSSCC-----C-CTTCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSSC-CSS--CC
T ss_pred CCCCEEECcCCC------CCCCc-----c-cCCCCCCCEEECCCC-cCcc--cC---CCcccccEEECcCCc-CCc--Cc
Confidence 467777776643 11222 1 245677777777764 3321 11 122477777777764 222 11
Q ss_pred HHHcCCCCccEEEccCCCCCCHHHHHHhh-CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHh
Q 015585 155 DLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQ 233 (404)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~ 233 (404)
. ...+++|+.|+++++. +.. +. ..++|++|+++++ .+. .+..+..+++|++|++++|.++. +..
T Consensus 190 ~-~~~l~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~l~~n-~l~--~lp~~~~l~~L~~L~l~~N~l~~-----l~~ 254 (454)
T 1jl5_A 190 E-LQNLPFLTAIYADNNS-LKK-----LPDLPLSLESIVAGNN-ILE--ELPELQNLPFLTTIYADNNLLKT-----LPD 254 (454)
T ss_dssp C-CTTCTTCCEEECCSSC-CSS-----CCCCCTTCCEEECCSS-CCS--SCCCCTTCTTCCEEECCSSCCSS-----CCS
T ss_pred c-ccCCCCCCEEECCCCc-CCc-----CCCCcCcccEEECcCC-cCC--cccccCCCCCCCEEECCCCcCCc-----ccc
Confidence 1 3466777777777764 221 11 2357788888774 444 22346677888888888887653 122
Q ss_pred cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHH
Q 015585 234 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEAL 313 (404)
Q Consensus 234 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 313 (404)
..++|+.|++++|. +.. +. ..+++|++|+++++ .++.. ....++|+.|++++|. ++. +
T Consensus 255 ~~~~L~~L~l~~N~-l~~-----l~----~~~~~L~~L~ls~N-~l~~l-----~~~~~~L~~L~l~~N~-l~~-----i 312 (454)
T 1jl5_A 255 LPPSLEALNVRDNY-LTD-----LP----ELPQSLTFLDVSEN-IFSGL-----SELPPNLYYLNASSNE-IRS-----L 312 (454)
T ss_dssp CCTTCCEEECCSSC-CSC-----CC----CCCTTCCEEECCSS-CCSEE-----SCCCTTCCEEECCSSC-CSE-----E
T ss_pred cccccCEEECCCCc-ccc-----cC----cccCcCCEEECcCC-ccCcc-----cCcCCcCCEEECcCCc-CCc-----c
Confidence 35778888888776 332 11 23457777777775 33321 0112466666666663 332 1
Q ss_pred HhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccc
Q 015585 314 ARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGC 392 (404)
Q Consensus 314 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~ 392 (404)
.. ..++|+.|+++++ .++. +. ..+++|+.|++++|.++.... ..+.++ +++.+|.+..
T Consensus 313 ~~------~~~~L~~L~Ls~N-~l~~-----lp-~~~~~L~~L~L~~N~l~~lp~--------~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 313 CD------LPPSLEELNVSNN-KLIE-----LP-ALPPRLERLIASFNHLAEVPE--------LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CC------CCTTCCEEECCSS-CCSC-----CC-CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSS
T ss_pred cC------CcCcCCEEECCCC-cccc-----cc-ccCCcCCEEECCCCccccccc--------hhhhccEEECCCCCCCc
Confidence 11 1135666666653 3332 11 124556666666655543311 234454 5555555554
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.47 E-value=1.4e-15 Score=149.38 Aligned_cols=140 Identities=16% Similarity=0.092 Sum_probs=91.3
Q ss_pred hhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHH
Q 015585 207 ISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILT 286 (404)
Q Consensus 207 l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 286 (404)
+..+++++.++++.+.+..... .....++.++.|+++++..... ...... ..+++|++|+++++ .++......
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~-~~~~~~----~~l~~L~~L~Ls~N-~L~~l~~~~ 513 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQEN-FLPDIF----TELRNLTFLDLSQC-QLEQLSPTA 513 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGG-EECSCC----TTCTTCCEEECTTS-CCCEECTTT
T ss_pred cccccccccccccccccccccc-cccccchhhhhhhhhhcccccc-cCchhh----hhccccCEEECCCC-ccCCcChHH
Confidence 3456778888888775432211 1223578999999998862221 111112 46789999999997 555422112
Q ss_pred HHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCC-CcccEEecCCccccC
Q 015585 287 IAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSF-RGLHWLGIGQTRLAS 365 (404)
Q Consensus 287 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~-~~L~~L~l~~~~l~~ 365 (404)
...+++|+.|+|++|. ++......+. ++++|+.|++++ +.++......+. .+ ++|+.|++++|++.=
T Consensus 514 -f~~l~~L~~L~Ls~N~-l~~l~~~~~~-------~l~~L~~L~Ls~-N~l~~~~~~~l~--~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 514 -FNSLSSLQVLNMSHNN-FFSLDTFPYK-------CLNSLQVLDYSL-NHIMTSKKQELQ--HFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp -TTTCTTCCEEECTTSC-CCBCCCGGGT-------TCTTCCEEECTT-SCCCBCCSSCTT--CCCTTCCEEECTTCCBCC
T ss_pred -HcCCCCCCEEECCCCc-CCCCChhHHh-------CCCCCCEEECCC-CcCCCCCHHHHH--hhhCcCCEEEeeCCCCcc
Confidence 2357999999999995 5532222233 589999999999 467654444443 34 689999999999863
No 72
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.46 E-value=8.9e-14 Score=110.54 Aligned_cols=112 Identities=15% Similarity=0.267 Sum_probs=65.9
Q ss_pred CccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhh
Q 015585 267 SLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK 346 (404)
Q Consensus 267 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~ 346 (404)
.|++|++++|. +++.++..+ ..|++|++|+|++|..++|.++..++.... .+++|+.|++++|..||+.++..+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~---~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLEN---LQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHH---HHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhccc---ccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 46666666663 666666555 356666666666666666666666664100 0345666666666666666666665
Q ss_pred cCCCCcccEEecCCccccCCChHHHHHHHhcCCccEEEe
Q 015585 347 RPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCL 385 (404)
Q Consensus 347 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~~ 385 (404)
.+++|++|++++|.-.+....++..+.+..|.+++.+
T Consensus 137 --~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~ 173 (176)
T 3e4g_A 137 --HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL 173 (176)
T ss_dssp --GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred --cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEEe
Confidence 3666666666666533222234556666777766554
No 73
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.46 E-value=2.9e-15 Score=134.57 Aligned_cols=225 Identities=21% Similarity=0.248 Sum_probs=115.1
Q ss_pred CCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCC
Q 015585 41 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS 120 (404)
Q Consensus 41 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 120 (404)
.+++++|+++++. ++ .....+..+++|++|+++++. +..+.. ....+++|++|+++++
T Consensus 80 ~~~l~~L~L~~n~---------l~-~lp~~l~~l~~L~~L~L~~n~------l~~lp~-----~~~~l~~L~~L~Ls~n- 137 (328)
T 4fcg_A 80 QPGRVALELRSVP---------LP-QFPDQAFRLSHLQHMTIDAAG------LMELPD-----TMQQFAGLETLTLARN- 137 (328)
T ss_dssp STTCCEEEEESSC---------CS-SCCSCGGGGTTCSEEEEESSC------CCCCCS-----CGGGGTTCSEEEEESC-
T ss_pred ccceeEEEccCCC---------ch-hcChhhhhCCCCCEEECCCCC------ccchhH-----HHhccCCCCEEECCCC-
Confidence 3566666666642 22 111224456666666666542 111111 1134566666666663
Q ss_pred CCCHHHHHHHHHhCCCCcEEEecCCCCCCHHH--H-----HHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEec
Q 015585 121 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLA--F-----HDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDL 193 (404)
Q Consensus 121 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 193 (404)
.++ .+...+..+++|+.|++++|....... + ......+++|+.|+++++. +. .....+..+++|++|++
T Consensus 138 ~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 138 PLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR-SLPASIANLQNLKSLKI 213 (328)
T ss_dssp CCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC-CCCGGGGGCTTCCEEEE
T ss_pred ccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC-cchHhhcCCCCCCEEEc
Confidence 332 122224456666666666643221100 0 0001236777777777764 32 11123556777888888
Q ss_pred cCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEec
Q 015585 194 GGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDL 273 (404)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l 273 (404)
+++ .+.. ....+..+++|++|++++|.+....... ...+++|++|++++|...+.. ...+ ..+++|++|++
T Consensus 214 ~~N-~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~-p~~~-----~~l~~L~~L~L 284 (328)
T 4fcg_A 214 RNS-PLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTL-PLDI-----HRLTQLEKLDL 284 (328)
T ss_dssp ESS-CCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBC-CTTG-----GGCTTCCEEEC
T ss_pred cCC-CCCc-CchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhc-chhh-----hcCCCCCEEeC
Confidence 774 4442 2234566777888888776544321111 224677888888777533221 1112 25678888888
Q ss_pred CCCCCCCHHHHHHHHHhCCCCceEeecCC
Q 015585 274 GYMPGISDDGILTIAAAGIGIIDLCVRSC 302 (404)
Q Consensus 274 ~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 302 (404)
++|+...... . ....+++|+.+.+..+
T Consensus 285 ~~n~~~~~iP-~-~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 285 RGCVNLSRLP-S-LIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCTTCCCCC-G-GGGGSCTTCEEECCGG
T ss_pred CCCCchhhcc-H-HHhhccCceEEeCCHH
Confidence 8864333211 1 1234677888877654
No 74
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.45 E-value=4.5e-17 Score=145.49 Aligned_cols=185 Identities=16% Similarity=0.116 Sum_probs=90.4
Q ss_pred hhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCC-CcCEEeecCCCCCcHHHHHHHHhh
Q 015585 182 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNL-PIMNLCLRGCKRVTDKGISHLLCV 260 (404)
Q Consensus 182 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~-~L~~L~l~~~~~l~~~~~~~l~~~ 260 (404)
+..+++|++|+++++ .+.......+..+++|++|++++|.+++.....+. .++ +|++|+++++. +.......+.
T Consensus 121 ~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~-l~~~~~~~~~-- 195 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNR-LTGKIPPTFA-- 195 (313)
T ss_dssp GGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSE-EEEECCGGGG--
T ss_pred HhCCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCe-eeccCChHHh--
Confidence 334455555555542 33322223344455555555555544322111122 223 55555555543 2211111111
Q ss_pred cCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHH
Q 015585 261 GGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVD 340 (404)
Q Consensus 261 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~ 340 (404)
.++ |++|+++++ .++.... .....+++|+.|++++|. ++...- .+ . .+++|+.|++++| .++..
T Consensus 196 ---~l~-L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~-~~----~---~l~~L~~L~Ls~N-~l~~~ 259 (313)
T 1ogq_A 196 ---NLN-LAFVDLSRN-MLEGDAS-VLFGSDKNTQKIHLAKNS-LAFDLG-KV----G---LSKNLNGLDLRNN-RIYGT 259 (313)
T ss_dssp ---GCC-CSEEECCSS-EEEECCG-GGCCTTSCCSEEECCSSE-ECCBGG-GC----C---CCTTCCEEECCSS-CCEEC
T ss_pred ---CCc-ccEEECcCC-cccCcCC-HHHhcCCCCCEEECCCCc-eeeecC-cc----c---ccCCCCEEECcCC-cccCc
Confidence 222 666666654 2221111 111235677777777764 331100 01 1 4678888888874 55433
Q ss_pred HHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccccC
Q 015585 341 SLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD 394 (404)
Q Consensus 341 ~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~ 394 (404)
....+. .+++|++|++++|.+++.-.. . ..++.++ +++.+|+.-|..
T Consensus 260 ~p~~l~--~l~~L~~L~Ls~N~l~~~ip~----~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 260 LPQGLT--QLKFLHSLNVSFNNLCGEIPQ----G-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CCGGGG--GCTTCCEEECCSSEEEEECCC----S-TTGGGSCGGGTCSSSEEEST
T ss_pred CChHHh--cCcCCCEEECcCCcccccCCC----C-ccccccChHHhcCCCCccCC
Confidence 333333 377888888888887643111 1 4567777 778888776653
No 75
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.44 E-value=4.6e-15 Score=132.15 Aligned_cols=229 Identities=17% Similarity=0.111 Sum_probs=153.9
Q ss_pred CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhh--hhhhcCCCCCceEEecccccCCCCCc
Q 015585 16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSG--LQSLGSCHHLTGLSLTRCRHNHQGTF 93 (404)
Q Consensus 16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~ 93 (404)
.++|++|+++++.+... ...+...+++|++|++++|. ++..+ ...+..+++|++|+++++. +
T Consensus 27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~---------l~~~~~~~~~~~~~~~L~~L~Ls~n~------i 90 (306)
T 2z66_A 27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNG---------LSFKGCCSQSDFGTTSLKYLDLSFNG------V 90 (306)
T ss_dssp CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC---------CCEEEEEEHHHHSCSCCCEEECCSCS------E
T ss_pred CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCc---------cCcccCcccccccccccCEEECCCCc------c
Confidence 36899999998887742 23333458999999999973 33221 2334578999999998863 1
Q ss_pred cccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCC
Q 015585 94 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL 173 (404)
Q Consensus 94 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 173 (404)
..+... ...+++|++|+++++ .++.......+..+++|+.|+++++.. ... .......+++|+.|+++++.
T Consensus 91 ~~l~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~L~l~~n~- 161 (306)
T 2z66_A 91 ITMSSN-----FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT-RVA-FNGIFNGLSSLEVLKMAGNS- 161 (306)
T ss_dssp EEEEEE-----EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCC-EEC-STTTTTTCTTCCEEECTTCE-
T ss_pred ccChhh-----cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcC-Ccc-chhhcccCcCCCEEECCCCc-
Confidence 222211 246789999999985 332221112256679999999999852 211 11223467899999999875
Q ss_pred CCH-HHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585 174 ITS-ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 252 (404)
Q Consensus 174 ~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 252 (404)
+.. .....+..+++|++|+++++ .+.......+..+++|+.|++++|.+++..... ...+++|++|++++|. +...
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~ 238 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNH-IMTS 238 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSC-CCBC
T ss_pred cccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccChhh-ccCcccCCEeECCCCC-Cccc
Confidence 332 11223557899999999995 666655566778999999999999776532222 2357999999999987 5443
Q ss_pred HHHHHHhhcCCCC-CCccEEecCCCC
Q 015585 253 GISHLLCVGGTIS-QSLTTLDLGYMP 277 (404)
Q Consensus 253 ~~~~l~~~~~~~~-~~L~~L~l~~~~ 277 (404)
....+. .+ ++|++|++++++
T Consensus 239 ~~~~~~-----~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 239 KKQELQ-----HFPSSLAFLNLTQND 259 (306)
T ss_dssp SSSSCC-----CCCTTCCEEECTTCC
T ss_pred CHHHHH-----hhhccCCEEEccCCC
Confidence 322222 34 589999999863
No 76
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.44 E-value=1.1e-13 Score=109.93 Aligned_cols=106 Identities=20% Similarity=0.208 Sum_probs=77.9
Q ss_pred CCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHH---hCCCCceEeecCCCCCCHHHHHH
Q 015585 236 LPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVTDASVEA 312 (404)
Q Consensus 236 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~ 312 (404)
.+|++|++++|. +++.++..+. .+++|++|++++|..++|.++..+.. .+++|++|++++|..+||.++..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~-----~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHME-----GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGT-----TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhc-----CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 357777777776 7777776664 67788888888887788888777764 24678888888888888888888
Q ss_pred HHhhCCCcccCCCCcEEeccCCCCCCHHHH--HhhhcCCCCcccE
Q 015585 313 LARKQPDQEKSKQLRRLDLCNCIGLSVDSL--RWVKRPSFRGLHW 355 (404)
Q Consensus 313 l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~--~~l~~~~~~~L~~ 355 (404)
++. +++|+.|++++|+.+++.+. ..+. ..+|+++.
T Consensus 135 L~~-------~~~L~~L~L~~c~~Itd~gl~~~~L~-~~lP~l~V 171 (176)
T 3e4g_A 135 LHH-------FRNLKYLFLSDLPGVKEKEKIVQAFK-TSLPSLEL 171 (176)
T ss_dssp GGG-------CTTCCEEEEESCTTCCCHHHHHHHHH-HHCTTCEE
T ss_pred Hhc-------CCCCCEEECCCCCCCCchHHHHHHHH-HHCCCcEE
Confidence 774 78888888888888887653 3333 34666554
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.43 E-value=3.4e-14 Score=126.80 Aligned_cols=229 Identities=18% Similarity=0.142 Sum_probs=147.1
Q ss_pred CcEEeccCCCCCh-----HHHHH-H-HhhCCCccEEeecCCCCCCcccccccchhhhhhh--cCCCCCceEEecccccCC
Q 015585 19 LRSLSLVLDVITD-----ELLIT-I-TASLPFLVELDLEDRPNTEPLARLDLTSSGLQSL--GSCHHLTGLSLTRCRHNH 89 (404)
Q Consensus 19 L~~L~L~~~~~~~-----~~~~~-i-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~ 89 (404)
|+.|+++++.+.. ..... + ...+++|++|++++| .++......+ +.+++|++|+++++.
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n---------~l~~~~~~~~~~~~l~~L~~L~Ls~N~--- 132 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL---------EVTGTAPPPLLEATGPDLNILNLRNVS--- 132 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE---------BCBSCCCCCSSSCCSCCCSEEEEESCB---
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC---------cccchhHHHHHHhcCCCccEEEccCCC---
Confidence 7777777655532 11111 1 114899999999996 3433333333 788999999999864
Q ss_pred CCCccccChhhHHHHHhc-CCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHH--cCCCCccEE
Q 015585 90 QGTFKRVNDMGMFLLSEG-CKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLT--GVPCALVEV 166 (404)
Q Consensus 90 ~~~~~~~~~~~l~~l~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~--~~~~~L~~L 166 (404)
+..+ +..+..+... .++|++|+++++ .++.... ..+..+++|+.|+++++.......+.... ..+++|+.|
T Consensus 133 ---l~~~-~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L 206 (312)
T 1wwl_A 133 ---WATR-DAWLAELQQWLKPGLKVLSIAQA-HSLNFSC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206 (312)
T ss_dssp ---CSSS-SSHHHHHHTTCCTTCCEEEEESC-SCCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE
T ss_pred ---Ccch-hHHHHHHHHhhcCCCcEEEeeCC-CCccchH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE
Confidence 2233 2334333222 389999999985 3332211 12456789999999999743333333333 678999999
Q ss_pred EccCCCCCC--HHHHHHhhCCCCCCEEeccCCCCCChHH-HHhhhCCCCCCEEEccCCccCHHHHHHHHhc-CCCcCEEe
Q 015585 167 RLLWCRLIT--SETVKKLASSRNLEVLDLGGCKSIADTC-LRSISCLRKLTALNLTGADITDSGLSILAQG-NLPIMNLC 242 (404)
Q Consensus 167 ~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~-~~~L~~L~ 242 (404)
+++++.... ......+..+++|++|+++++ .+.... ...+..+++|++|++++|.++. +... .++|++|+
T Consensus 207 ~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~~L~~L~ 280 (312)
T 1wwl_A 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-----VPKGLPAKLSVLD 280 (312)
T ss_dssp ECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCSS-----CCSSCCSEEEEEE
T ss_pred ECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCccCh-----hhhhccCCceEEE
Confidence 999986332 222223347899999999984 555533 2344567899999999998762 1211 26899999
Q ss_pred ecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCC
Q 015585 243 LRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGIS 280 (404)
Q Consensus 243 l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~ 280 (404)
++++. ++.. .. . ..+++|++|++++. .++
T Consensus 281 Ls~N~-l~~~--p~-~----~~l~~L~~L~L~~N-~l~ 309 (312)
T 1wwl_A 281 LSYNR-LDRN--PS-P----DELPQVGNLSLKGN-PFL 309 (312)
T ss_dssp CCSSC-CCSC--CC-T----TTSCEEEEEECTTC-TTT
T ss_pred CCCCC-CCCC--hh-H----hhCCCCCEEeccCC-CCC
Confidence 99987 5543 11 2 46889999999985 444
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=2.3e-14 Score=135.72 Aligned_cols=214 Identities=19% Similarity=0.112 Sum_probs=110.7
Q ss_pred CCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCC
Q 015585 42 PFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK 121 (404)
Q Consensus 42 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 121 (404)
++|++|++++|. ++......++.+++|++|+++++. +....+ ...+++|+.|+++++ .
T Consensus 34 ~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~------l~~l~~L~~L~Ls~N-~ 91 (487)
T 3oja_A 34 WNVKELDLSGNP---------LSQISAADLAPFTKLELLNLSSNV------LYETLD------LESLSTLRTLDLNNN-Y 91 (487)
T ss_dssp GGCCEEECCSSC---------CCCCCGGGGTTCTTCCEEECTTSC------CEEEEE------CTTCTTCCEEECCSS-E
T ss_pred CCccEEEeeCCc---------CCCCCHHHHhCCCCCCEEEeeCCC------CCCCcc------cccCCCCCEEEecCC-c
Confidence 467777777752 333333445677777777777643 111111 245667777777764 3
Q ss_pred CCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCCh
Q 015585 122 VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIAD 201 (404)
Q Consensus 122 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 201 (404)
++. +...++|+.|+++++. ++... ...+++|+.|+++++. +.......+..+++|++|+++++ .++.
T Consensus 92 l~~------l~~~~~L~~L~L~~N~-l~~~~----~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 158 (487)
T 3oja_A 92 VQE------LLVGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDT 158 (487)
T ss_dssp EEE------EEECTTCCEEECCSSC-CCCEE----ECCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTS-CCCE
T ss_pred CCC------CCCCCCcCEEECcCCc-CCCCC----ccccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCC-CCCC
Confidence 221 1122667777777664 22111 1234667777776654 33222223345667777777663 5554
Q ss_pred HHHHhhh-CCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCC
Q 015585 202 TCLRSIS-CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGIS 280 (404)
Q Consensus 202 ~~~~~l~-~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~ 280 (404)
.....+. .+++|+.|++++|.+++. .... .+++|+.|++++|. ++..... + ..+++|+.|+++++ .++
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~-~l~~L~~L~Ls~N~-l~~~~~~-~-----~~l~~L~~L~Ls~N-~l~ 227 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDV--KGQV-VFAKLKTLDLSSNK-LAFMGPE-F-----QSAAGVTWISLRNN-KLV 227 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE--ECCC-CCTTCCEEECCSSC-CCEECGG-G-----GGGTTCSEEECTTS-CCC
T ss_pred cChHHHhhhCCcccEEecCCCccccc--cccc-cCCCCCEEECCCCC-CCCCCHh-H-----cCCCCccEEEecCC-cCc
Confidence 4444443 566777777777665532 1111 35666777776665 3321111 1 24556666666664 343
Q ss_pred HHHHHHHHHhCCCCceEeecCCC
Q 015585 281 DDGILTIAAAGIGIIDLCVRSCF 303 (404)
Q Consensus 281 ~~~~~~l~~~~~~L~~L~l~~~~ 303 (404)
. +......+++|+.|++++|+
T Consensus 228 ~--lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 228 L--IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp E--ECTTCCCCTTCCEEECTTCC
T ss_pred c--cchhhccCCCCCEEEcCCCC
Confidence 2 11111234566666666664
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.42 E-value=8.7e-15 Score=128.30 Aligned_cols=207 Identities=15% Similarity=0.042 Sum_probs=115.6
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCC
Q 015585 135 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT 214 (404)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 214 (404)
++|+.|+++++. ++.... .....+++|+.|+++++. +.......+..+++|++|+++++ .+.......+..+++|+
T Consensus 28 ~~l~~L~ls~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGS-YSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCC-CCEECT-TTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCc-ccccCH-hHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCcccc
Confidence 468888888874 322111 123356788888888764 33322234556788888888874 55554445566778888
Q ss_pred EEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHH---HHHHHHHhC
Q 015585 215 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDD---GILTIAAAG 291 (404)
Q Consensus 215 ~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~l~~~~ 291 (404)
+|++.+|.++...... ...+++|++|+++++. +....+.... ..+++|++|+++++ .++.. .+..+ ..+
T Consensus 104 ~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~l~~~~----~~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~L 175 (276)
T 2z62_A 104 KLVAVETNLASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYF----SNLTNLEHLDLSSN-KIQSIYCTDLRVL-HQM 175 (276)
T ss_dssp EEECTTSCCCCSTTCC-CTTCTTCCEEECCSSC-CCCCCCCGGG----GGCTTCCEEECCSS-CCCEECGGGGHHH-HTC
T ss_pred EEECCCCCccccCchh-cccCCCCCEEECcCCc-cceecCchhh----ccCCCCCEEECCCC-CCCcCCHHHhhhh-hhc
Confidence 8888877655321111 2246778888887765 3331111112 24667888888775 44331 22222 123
Q ss_pred CCCc-eEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccC
Q 015585 292 IGII-DLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 365 (404)
Q Consensus 292 ~~L~-~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~ 365 (404)
+.|. .|++++|. ++.... ... ...+|+.|+++++ .++......+. .+++|+.|++++|+++.
T Consensus 176 ~~l~l~L~ls~n~-l~~~~~-----~~~---~~~~L~~L~L~~n-~l~~~~~~~~~--~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 176 PLLNLSLDLSLNP-MNFIQP-----GAF---KEIRLKELALDTN-QLKSVPDGIFD--RLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TTCCEEEECCSSC-CCEECT-----TSS---CSCCEEEEECCSS-CCSCCCTTTTT--TCCSCCEEECCSSCBCC
T ss_pred cccceeeecCCCc-ccccCc-----ccc---CCCcccEEECCCC-ceeecCHhHhc--ccccccEEEccCCcccc
Confidence 3333 67777764 432111 011 2346777777774 45533322222 46777777777777764
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=1.5e-14 Score=136.97 Aligned_cols=238 Identities=20% Similarity=0.197 Sum_probs=162.0
Q ss_pred cCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCc
Q 015585 14 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF 93 (404)
Q Consensus 14 ~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 93 (404)
..+++|++|+|+++.+....+..+. .+++|++|++++|. ++.. ..+..+++|++|+++++.
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~---------l~~~--~~l~~l~~L~~L~Ls~N~------- 91 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNV---------LYET--LDLESLSTLRTLDLNNNY------- 91 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSC---------CEEE--EECTTCTTCCEEECCSSE-------
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCC---------CCCC--cccccCCCCCEEEecCCc-------
Confidence 4556999999999888764444444 59999999999973 3221 127889999999999863
Q ss_pred cccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCC
Q 015585 94 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL 173 (404)
Q Consensus 94 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 173 (404)
+... ...++|+.|+++++ .++... ...+++|+.|+++++. ++... ......+++|+.|+++++.
T Consensus 92 --l~~l------~~~~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~- 155 (487)
T 3oja_A 92 --VQEL------LVGPSIETLHAANN-NISRVS----CSRGQGKKNIYLANNK-ITMLR-DLDEGCRSRVQYLDLKLNE- 155 (487)
T ss_dssp --EEEE------EECTTCCEEECCSS-CCCCEE----ECCCSSCEEEECCSSC-CCSGG-GBCGGGGSSEEEEECTTSC-
T ss_pred --CCCC------CCCCCcCEEECcCC-cCCCCC----ccccCCCCEEECCCCC-CCCCC-chhhcCCCCCCEEECCCCC-
Confidence 2221 13489999999985 443321 1235899999999986 33211 1122357899999999875
Q ss_pred CCHHHHHHhh-CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585 174 ITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 252 (404)
Q Consensus 174 ~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 252 (404)
+.......+. .+++|++|+++++ .++.. .....+++|+.|++++|.++..... ...+++|+.|++++|. ++.
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~L~Ls~N~-l~~- 228 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNK-LVL- 228 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSC-CCE-
T ss_pred CCCcChHHHhhhCCcccEEecCCC-ccccc--cccccCCCCCEEECCCCCCCCCCHh--HcCCCCccEEEecCCc-Ccc-
Confidence 4443344454 6899999999995 55543 3344689999999999988753221 3357899999999987 543
Q ss_pred HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEee
Q 015585 253 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCV 299 (404)
Q Consensus 253 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l 299 (404)
+.... ..+++|+.|+++++ .+....+......++.|+.+.+
T Consensus 229 -lp~~l----~~l~~L~~L~l~~N-~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 229 -IEKAL----RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp -ECTTC----CCCTTCCEEECTTC-CBCHHHHHHHHTTCHHHHHHHH
T ss_pred -cchhh----ccCCCCCEEEcCCC-CCcCcchHHHHHhCCCCcEEec
Confidence 11112 46789999999996 6664444444445555655555
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.41 E-value=4.5e-14 Score=125.97 Aligned_cols=260 Identities=16% Similarity=0.115 Sum_probs=161.4
Q ss_pred cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhh-hh--hhcCCCCCceEEecccccC
Q 015585 12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSG-LQ--SLGSCHHLTGLSLTRCRHN 88 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~--~l~~~~~L~~L~l~~~~~~ 88 (404)
.+...++|++|+++++.+ ..+..+... |++|+++++.... ..++... .. ....+++|++|+++++..
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~----~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l- 107 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRA----ARIPSRILFGALRVLGISGLQELTLENLEV- 107 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEE----EECBHHHHHHHHHHHTTSCCCEEEEEEEBC-
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccC----CCcCHHHHHHHHHhcCcCCccEEEccCCcc-
Confidence 345567788888887776 333444442 7777777652100 1122211 11 123689999999998642
Q ss_pred CCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHH--HHHHHHH-hCCCCcEEEecCCCCCCHHHHHHHHcCCCCccE
Q 015585 89 HQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDA--GFAAILL-SCHSLKKFEVRSASFLSDLAFHDLTGVPCALVE 165 (404)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~--~~~~l~~-~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 165 (404)
....+..+ +...+++|++|+++++ .++.. .+..+.. ..++|++|+++++.. +... ......+++|+.
T Consensus 108 -----~~~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~-~~~~~~l~~L~~ 177 (312)
T 1wwl_A 108 -----TGTAPPPL--LEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFS-CEQVRVFPALST 177 (312)
T ss_dssp -----BSCCCCCS--SSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCC-TTTCCCCSSCCE
T ss_pred -----cchhHHHH--HHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccch-HHHhccCCCCCE
Confidence 11111110 0146789999999985 44332 1222111 128999999999852 2211 122347899999
Q ss_pred EEccCCCCCCHH-HHHHh--hCCCCCCEEeccCCCCCCh---HHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcC
Q 015585 166 VRLLWCRLITSE-TVKKL--ASSRNLEVLDLGGCKSIAD---TCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 239 (404)
Q Consensus 166 L~l~~~~~~~~~-~~~~l--~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~ 239 (404)
|+++++...... ....+ ..+++|++|+++++ .+.. .....+..+++|++|++++|.+++.........+++|+
T Consensus 178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred EECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 999998633322 23344 57899999999995 5652 22233457899999999999887643111122468999
Q ss_pred EEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCC
Q 015585 240 NLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVT 306 (404)
Q Consensus 240 ~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~ 306 (404)
+|++++|. ++. +.. ...++|++|+++++ .++... . ...+++|+.|++++|+ ++
T Consensus 257 ~L~Ls~N~-l~~--ip~------~~~~~L~~L~Ls~N-~l~~~p--~-~~~l~~L~~L~L~~N~-l~ 309 (312)
T 1wwl_A 257 SLNLSFTG-LKQ--VPK------GLPAKLSVLDLSYN-RLDRNP--S-PDELPQVGNLSLKGNP-FL 309 (312)
T ss_dssp EEECTTSC-CSS--CCS------SCCSEEEEEECCSS-CCCSCC--C-TTTSCEEEEEECTTCT-TT
T ss_pred EEECCCCc-cCh--hhh------hccCCceEEECCCC-CCCCCh--h-HhhCCCCCEEeccCCC-CC
Confidence 99999987 542 111 12279999999996 665431 1 3467999999999996 54
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=123.14 Aligned_cols=136 Identities=18% Similarity=0.141 Sum_probs=72.2
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHH--hCCCCcEEEecCCCCCCHHHHHHHH-cCCCCccEEEccCCCCCCH---HHHHHh
Q 015585 109 KGLESVRLGGFSKVSDAGFAAILL--SCHSLKKFEVRSASFLSDLAFHDLT-GVPCALVEVRLLWCRLITS---ETVKKL 182 (404)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~---~~~~~l 182 (404)
..++.+.+.++ .+++..+..+.. .+++|++|+++++.. ....-..+. ..+++|+.|+++++..... .....+
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 46788888874 566665554433 236788888887742 211101111 3567777777777652210 111223
Q ss_pred hCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHH-HHHH--HHhcCCCcCEEeecCCC
Q 015585 183 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDS-GLSI--LAQGNLPIMNLCLRGCK 247 (404)
Q Consensus 183 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-~l~~--l~~~~~~L~~L~l~~~~ 247 (404)
..+++|++|+++++ .+.......+..+++|++|++++|.+... ++.. ....+++|++|++++|.
T Consensus 142 ~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 142 WLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp TBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred hhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 35677777777764 44443344455666677777766665432 1111 01234555555555554
No 83
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.39 E-value=1.4e-14 Score=130.11 Aligned_cols=225 Identities=13% Similarity=0.080 Sum_probs=150.1
Q ss_pred CCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcc
Q 015585 15 SSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFK 94 (404)
Q Consensus 15 ~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 94 (404)
..++++.|+|+++.+. ..+..+.. +++|++|++++|. ++ .....++.+++|++|+++++. +.
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~---------l~-~lp~~~~~l~~L~~L~Ls~n~------l~ 140 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAG---------LM-ELPDTMQQFAGLETLTLARNP------LR 140 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSC---------CC-CCCSCGGGGTTCSEEEEESCC------CC
T ss_pred cccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCC---------cc-chhHHHhccCCCCEEECCCCc------cc
Confidence 4588999999988776 33333444 8999999999973 33 222346788999999998864 22
Q ss_pred ccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHH-------HHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEE
Q 015585 95 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFA-------AILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVR 167 (404)
Q Consensus 95 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~-------~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 167 (404)
.+.. ....+++|+.|++++|......... ..+..+++|+.|+++++. ++ .+......+++|+.|+
T Consensus 141 ~lp~-----~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~--~lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 141 ALPA-----SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR--SLPASIANLQNLKSLK 212 (328)
T ss_dssp CCCG-----GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC--CCCGGGGGCTTCCEEE
T ss_pred cCcH-----HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC--cchHhhcCCCCCCEEE
Confidence 2321 1357889999999886433211000 002247899999999885 33 2223345788999999
Q ss_pred ccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585 168 LLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 247 (404)
Q Consensus 168 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 247 (404)
++++.. .. ....+..+++|++|++++| .+.......+..+++|++|++++|.+....... ...+++|++|++++|.
T Consensus 213 L~~N~l-~~-l~~~l~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 213 IRNSPL-SA-LGPAIHHLPKLEELDLRGC-TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCV 288 (328)
T ss_dssp EESSCC-CC-CCGGGGGCTTCCEEECTTC-TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCT
T ss_pred ccCCCC-Cc-CchhhccCCCCCEEECcCC-cchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCC
Confidence 998763 31 1224668899999999996 444444456678899999999998654322222 2368999999999987
Q ss_pred CCcHHHHHHHHhhcCCCCCCccEEecCC
Q 015585 248 RVTDKGISHLLCVGGTISQSLTTLDLGY 275 (404)
Q Consensus 248 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 275 (404)
..+. ....+ ..+++|+.+.+..
T Consensus 289 ~~~~-iP~~l-----~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 289 NLSR-LPSLI-----AQLPANCIILVPP 310 (328)
T ss_dssp TCCC-CCGGG-----GGSCTTCEEECCG
T ss_pred chhh-ccHHH-----hhccCceEEeCCH
Confidence 4332 11222 3678899998875
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=2.1e-13 Score=121.53 Aligned_cols=60 Identities=23% Similarity=0.263 Sum_probs=34.1
Q ss_pred CCCcEEeccCCCCChHHHHHHHh--hCCCccEEeecCCCCCCcccccccchhhhhhh--cCCCCCceEEeccc
Q 015585 17 FNLRSLSLVLDVITDELLITITA--SLPFLVELDLEDRPNTEPLARLDLTSSGLQSL--GSCHHLTGLSLTRC 85 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~ 85 (404)
..++.+.+....+.+..+..+.. .+++|++|++++|. +.......+ ..+++|++|+++++
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~---------l~~~~~~~~~~~~~~~L~~L~Ls~n 127 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK---------ITGTMPPLPLEATGLALSSLRLRNV 127 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC---------CBSCCCCCSSSCCCBCCSSCEEESC
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE---------eccchhhhhhhccCCCCCEEEeecc
Confidence 34666777666666555444332 24567777777762 222222233 56677777777664
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=1.4e-12 Score=116.01 Aligned_cols=146 Identities=20% Similarity=0.304 Sum_probs=73.3
Q ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCC
Q 015585 106 EGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASS 185 (404)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 185 (404)
..+++|+.|+++++. ++.. . -+..+++|+.|+++++. ++.. .. ...+++|+.|+++++. +.. +..+..+
T Consensus 82 ~~l~~L~~L~L~~n~-l~~~--~-~~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n~-l~~--~~~l~~l 150 (308)
T 1h6u_A 82 KNLTKITELELSGNP-LKNV--S-AIAGLQSIKTLDLTSTQ-ITDV--TP-LAGLSNLQVLYLDLNQ-ITN--ISPLAGL 150 (308)
T ss_dssp TTCCSCCEEECCSCC-CSCC--G-GGTTCTTCCEEECTTSC-CCCC--GG-GTTCTTCCEEECCSSC-CCC--CGGGGGC
T ss_pred ccCCCCCEEEccCCc-CCCc--h-hhcCCCCCCEEECCCCC-CCCc--hh-hcCCCCCCEEECCCCc-cCc--CccccCC
Confidence 345555555555532 2221 1 13345566666666553 2211 11 3355666666666654 221 1124556
Q ss_pred CCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCC
Q 015585 186 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 265 (404)
Q Consensus 186 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 265 (404)
++|++|+++++ .+.+. ..+..+++|+.|++++|.+++... ...+++|++|++++|. +.+.. .+ ..+
T Consensus 151 ~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~-l~~~~--~l-----~~l 216 (308)
T 1h6u_A 151 TNLQYLSIGNA-QVSDL--TPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQ-ISDVS--PL-----ANT 216 (308)
T ss_dssp TTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSC-CCBCG--GG-----TTC
T ss_pred CCccEEEccCC-cCCCC--hhhcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCc-cCccc--cc-----cCC
Confidence 66666666664 34332 225566666666666665543221 2346667777776665 33322 12 256
Q ss_pred CCccEEecCCC
Q 015585 266 QSLTTLDLGYM 276 (404)
Q Consensus 266 ~~L~~L~l~~~ 276 (404)
++|+.|+++++
T Consensus 217 ~~L~~L~l~~N 227 (308)
T 1h6u_A 217 SNLFIVTLTNQ 227 (308)
T ss_dssp TTCCEEEEEEE
T ss_pred CCCCEEEccCC
Confidence 66777776664
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.35 E-value=1.2e-12 Score=116.34 Aligned_cols=103 Identities=19% Similarity=0.242 Sum_probs=46.6
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCC
Q 015585 108 CKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRN 187 (404)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 187 (404)
+++|++|+++++ .+... .. +..+++|+.|+++++....... ...+++|+.|+++++. +.. +..+..+++
T Consensus 40 l~~L~~L~l~~~-~i~~l--~~-~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~-l~~--~~~~~~l~~ 108 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTI--EG-VQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP-LKN--VSAIAGLQS 108 (308)
T ss_dssp HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC-CSC--CGGGTTCTT
T ss_pred cCCcCEEEeeCC-CccCc--hh-hhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCc-CCC--chhhcCCCC
Confidence 346666666664 22221 11 3445666666666553211111 3345555555555543 221 123444555
Q ss_pred CCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccC
Q 015585 188 LEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 224 (404)
Q Consensus 188 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 224 (404)
|++|+++++ .+.. +..+..+++|++|++++|.++
T Consensus 109 L~~L~l~~n-~l~~--~~~l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 109 IKTLDLTST-QITD--VTPLAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp CCEEECTTS-CCCC--CGGGTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCC-CCCC--chhhcCCCCCCEEECCCCccC
Confidence 555555553 3322 122444555555555555443
No 87
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.33 E-value=1.1e-11 Score=120.05 Aligned_cols=244 Identities=19% Similarity=0.169 Sum_probs=165.0
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 96 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 96 (404)
++|++|++++|.++.. + ..+++|++|++++|.. +. +.. .+++|++|+++++. +..+
T Consensus 61 ~~L~~L~L~~N~l~~l--p---~~l~~L~~L~Ls~N~l---------~~--lp~--~l~~L~~L~Ls~N~------l~~l 116 (622)
T 3g06_A 61 AHITTLVIPDNNLTSL--P---ALPPELRTLEVSGNQL---------TS--LPV--LPPGLLELSIFSNP------LTHL 116 (622)
T ss_dssp TTCSEEEECSCCCSCC--C---CCCTTCCEEEECSCCC---------SC--CCC--CCTTCCEEEECSCC------CCCC
T ss_pred CCCcEEEecCCCCCCC--C---CcCCCCCEEEcCCCcC---------Cc--CCC--CCCCCCEEECcCCc------CCCC
Confidence 7999999998887731 1 1478999999999842 21 111 67899999998863 2223
Q ss_pred ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585 97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 176 (404)
Q Consensus 97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 176 (404)
.. .+++|+.|+++++ .++. +...+++|++|+++++. ++. +....++|+.|+++++. +..
T Consensus 117 ~~--------~l~~L~~L~L~~N-~l~~-----lp~~l~~L~~L~Ls~N~-l~~-----l~~~~~~L~~L~L~~N~-l~~ 175 (622)
T 3g06_A 117 PA--------LPSGLCKLWIFGN-QLTS-----LPVLPPGLQELSVSDNQ-LAS-----LPALPSELCKLWAYNNQ-LTS 175 (622)
T ss_dssp CC--------CCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSC
T ss_pred CC--------CCCCcCEEECCCC-CCCc-----CCCCCCCCCEEECcCCc-CCC-----cCCccCCCCEEECCCCC-CCC
Confidence 22 4578999999985 3332 11235899999999985 322 11245789999999875 332
Q ss_pred HHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHH
Q 015585 177 ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH 256 (404)
Q Consensus 177 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 256 (404)
+. ..+++|+.|+++++ .+.. +. ...++|+.|++.+|.++. +...+++|+.|++++|. ++..
T Consensus 176 --l~--~~~~~L~~L~Ls~N-~l~~--l~--~~~~~L~~L~L~~N~l~~-----l~~~~~~L~~L~Ls~N~-L~~l---- 236 (622)
T 3g06_A 176 --LP--MLPSGLQELSVSDN-QLAS--LP--TLPSELYKLWAYNNRLTS-----LPALPSGLKELIVSGNR-LTSL---- 236 (622)
T ss_dssp --CC--CCCTTCCEEECCSS-CCSC--CC--CCCTTCCEEECCSSCCSS-----CCCCCTTCCEEECCSSC-CSCC----
T ss_pred --Cc--ccCCCCcEEECCCC-CCCC--CC--CccchhhEEECcCCcccc-----cCCCCCCCCEEEccCCc-cCcC----
Confidence 11 35689999999984 5543 11 135789999999987763 22245789999999886 5431
Q ss_pred HHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCC
Q 015585 257 LLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG 336 (404)
Q Consensus 257 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 336 (404)
. ..+++|++|+++++ .++... ..+++|+.|++++|. ++.. -..+. .+++|+.|++++| .
T Consensus 237 -p----~~l~~L~~L~Ls~N-~L~~lp-----~~~~~L~~L~Ls~N~-L~~l-p~~l~-------~l~~L~~L~L~~N-~ 295 (622)
T 3g06_A 237 -P----VLPSELKELMVSGN-RLTSLP-----MLPSGLLSLSVYRNQ-LTRL-PESLI-------HLSSETTVNLEGN-P 295 (622)
T ss_dssp -C----CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CCSC-CGGGG-------GSCTTCEEECCSC-C
T ss_pred -C----CCCCcCcEEECCCC-CCCcCC-----cccccCcEEeCCCCC-CCcC-CHHHh-------hccccCEEEecCC-C
Confidence 1 35688999999986 554311 156889999999985 5521 11222 5889999999995 6
Q ss_pred CCHHHHHhh
Q 015585 337 LSVDSLRWV 345 (404)
Q Consensus 337 i~~~~~~~l 345 (404)
++......+
T Consensus 296 l~~~~~~~l 304 (622)
T 3g06_A 296 LSERTLQAL 304 (622)
T ss_dssp CCHHHHHHH
T ss_pred CCCcCHHHH
Confidence 776555443
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.29 E-value=2.3e-13 Score=119.20 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=51.2
Q ss_pred CCCCccEEEccCCCCCCHH-HHHHhhCCCCCCEEeccCCCCCChH---HHHhhhCCCCCC-EEEccCCccCHHHHHHHHh
Q 015585 159 VPCALVEVRLLWCRLITSE-TVKKLASSRNLEVLDLGGCKSIADT---CLRSISCLRKLT-ALNLTGADITDSGLSILAQ 233 (404)
Q Consensus 159 ~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~L~-~L~l~~~~l~~~~l~~l~~ 233 (404)
.+++|+.|+++++. +... ....+..+++|++|+++++ .+... .+..+..++.+. .|++++|.++......+
T Consensus 122 ~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-- 197 (276)
T 2z62_A 122 HLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-- 197 (276)
T ss_dssp TCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS--
T ss_pred cCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc--
Confidence 44556666665543 2111 1123445666666666663 34332 222223333333 66666665543211111
Q ss_pred cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCC
Q 015585 234 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 276 (404)
Q Consensus 234 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~ 276 (404)
...+|++|+++++. ++.... ... ..+++|++|++++.
T Consensus 198 ~~~~L~~L~L~~n~-l~~~~~-~~~----~~l~~L~~L~l~~N 234 (276)
T 2z62_A 198 KEIRLKELALDTNQ-LKSVPD-GIF----DRLTSLQKIWLHTN 234 (276)
T ss_dssp CSCCEEEEECCSSC-CSCCCT-TTT----TTCCSCCEEECCSS
T ss_pred CCCcccEEECCCCc-eeecCH-hHh----cccccccEEEccCC
Confidence 22367777777665 332211 111 34667777777764
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.28 E-value=3.8e-13 Score=117.36 Aligned_cols=183 Identities=16% Similarity=0.112 Sum_probs=118.2
Q ss_pred CCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCE
Q 015585 161 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 240 (404)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~ 240 (404)
++++.|+++++. +.......+..+++|++|+++++ .+.......+..+++|++|++++|.++..... ....+++|++
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIG-VFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT-TTTTCSSCCE
T ss_pred CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHh-HcccccCCCE
Confidence 579999998875 43322234567899999999884 55544334456789999999999877642221 2235788999
Q ss_pred EeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCc
Q 015585 241 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQ 320 (404)
Q Consensus 241 L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 320 (404)
|+++++. +.......+ ..+++|++|+++++ .++..... ....+++|+.|++++|. ++......+.
T Consensus 114 L~l~~n~-l~~~~~~~~-----~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~------ 178 (270)
T 2o6q_A 114 LRLDRNQ-LKSLPPRVF-----DSLTKLTYLSLGYN-ELQSLPKG-VFDKLTSLKELRLYNNQ-LKRVPEGAFD------ 178 (270)
T ss_dssp EECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTTTTT------
T ss_pred EECCCCc-cCeeCHHHh-----CcCcCCCEEECCCC-cCCccCHh-HccCCcccceeEecCCc-CcEeChhHhc------
Confidence 9998876 433221112 36788999999886 44432211 12356889999998884 4432221222
Q ss_pred ccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccC
Q 015585 321 EKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 365 (404)
Q Consensus 321 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~ 365 (404)
.+++|+.|+++++ .++......+. .+++|+.|++++|++.-
T Consensus 179 -~l~~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 179 -KLTELKTLKLDNN-QLKRVPEGAFD--SLEKLKMLQLQENPWDC 219 (270)
T ss_dssp -TCTTCCEEECCSS-CCSCCCTTTTT--TCTTCCEEECCSSCBCC
T ss_pred -cCCCcCEEECCCC-cCCcCCHHHhc--cccCCCEEEecCCCeeC
Confidence 4788999999885 56543333332 47889999998888754
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.24 E-value=1.3e-12 Score=115.15 Aligned_cols=201 Identities=14% Similarity=0.066 Sum_probs=98.0
Q ss_pred hCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCC
Q 015585 133 SCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRK 212 (404)
Q Consensus 133 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 212 (404)
.+++++.++++++. ++. +. ....+.++.|+++++. +.......+..+++|++|+++++ .++.. .....+++
T Consensus 8 ~l~~l~~l~~~~~~-l~~--ip--~~~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~ 78 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LTA--LP--PDLPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKL--QVDGTLPV 78 (290)
T ss_dssp CSTTCCEEECTTSC-CSS--CC--SCCCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCEE--ECCSCCTT
T ss_pred ccCCccEEECCCCC-CCc--CC--CCCCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC-ccCcc--cCCCCCCc
Confidence 34667777777653 221 00 0123567777777654 33322334556777777777763 44432 11245677
Q ss_pred CCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCC
Q 015585 213 LTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGI 292 (404)
Q Consensus 213 L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 292 (404)
|+.|++++|.++. +......+++|++|+++++. ++......+ ..+++|++|+++++ .++..... ....++
T Consensus 79 L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~ 148 (290)
T 1p9a_G 79 LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNR-LTSLPLGAL-----RGLGELQELYLKGN-ELKTLPPG-LLTPTP 148 (290)
T ss_dssp CCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSC-CCCCCSSTT-----TTCTTCCEEECTTS-CCCCCCTT-TTTTCT
T ss_pred CCEEECCCCcCCc--CchhhccCCCCCEEECCCCc-CcccCHHHH-----cCCCCCCEEECCCC-CCCccChh-hccccc
Confidence 7777777776542 11112245667777776664 332111111 24556666666664 33321111 112345
Q ss_pred CCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585 293 GIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 364 (404)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~ 364 (404)
+|+.|++++|. ++......+. .+++|+.|+++++ .++......+ ..++|+.|++++|++.
T Consensus 149 ~L~~L~L~~N~-l~~l~~~~~~-------~l~~L~~L~L~~N-~l~~ip~~~~---~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 149 KLEKLSLANNN-LTELPAGLLN-------GLENLDTLLLQEN-SLYTIPKGFF---GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCCEEECTTSC-CSCCCTTTTT-------TCTTCCEEECCSS-CCCCCCTTTT---TTCCCSEEECCSCCBC
T ss_pred CCCEEECCCCc-CCccCHHHhc-------CcCCCCEEECCCC-cCCccChhhc---ccccCCeEEeCCCCcc
Confidence 66666666663 3311111111 3566666666663 4442111111 2446666666666654
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.23 E-value=7.4e-13 Score=115.50 Aligned_cols=179 Identities=15% Similarity=0.055 Sum_probs=91.2
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCC
Q 015585 135 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT 214 (404)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 214 (404)
++++.|+++++. ++... ...+..+++|+.|+++++. +.......+..+++|++|+++++ .+.......+..+++|+
T Consensus 37 ~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLP-SKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLA 112 (270)
T ss_dssp TTCSEEECCSSC-CSCCC-TTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCC
T ss_pred CCCCEEECcCCC-CCeeC-HHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCC
Confidence 457777777664 22110 0122356677777776654 22111112345677777777663 44443334445667777
Q ss_pred EEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCC
Q 015585 215 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGI 294 (404)
Q Consensus 215 ~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 294 (404)
+|++++|.++...... ...+++|++|+++++. +.......+ ..+++|++|+++++ .++...... ...+++|
T Consensus 113 ~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L 183 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRV-FDSLTKLTYLSLGYNE-LQSLPKGVF-----DKLTSLKELRLYNN-QLKRVPEGA-FDKLTEL 183 (270)
T ss_dssp EEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCSCCCTTT-TTTCTTC
T ss_pred EEECCCCccCeeCHHH-hCcCcCCCEEECCCCc-CCccCHhHc-----cCCcccceeEecCC-cCcEeChhH-hccCCCc
Confidence 7777776554322111 1246677777777664 332211111 24567777777664 333211111 1235677
Q ss_pred ceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCC
Q 015585 295 IDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNC 334 (404)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 334 (404)
+.|++++|. ++......+. .+++|+.|+++++
T Consensus 184 ~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~l~~N 215 (270)
T 2o6q_A 184 KTLKLDNNQ-LKRVPEGAFD-------SLEKLKMLQLQEN 215 (270)
T ss_dssp CEEECCSSC-CSCCCTTTTT-------TCTTCCEEECCSS
T ss_pred CEEECCCCc-CCcCCHHHhc-------cccCCCEEEecCC
Confidence 777777763 4422111111 3667777777664
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.22 E-value=6.4e-13 Score=116.02 Aligned_cols=42 Identities=24% Similarity=0.206 Sum_probs=18.9
Q ss_pred hhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccC
Q 015585 182 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 224 (404)
Q Consensus 182 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 224 (404)
+..+++|++|+++++ .+.......+..+++|++|++++|.++
T Consensus 81 l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 122 (272)
T 3rfs_A 81 LKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQ 122 (272)
T ss_dssp GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred hcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCC
Confidence 344555555555543 333222222344455555555555443
No 93
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.22 E-value=3e-12 Score=112.70 Aligned_cols=182 Identities=16% Similarity=0.092 Sum_probs=98.1
Q ss_pred ccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCC
Q 015585 11 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQ 90 (404)
Q Consensus 11 ~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 90 (404)
..+..++++++++++++.++.. +..+ .+++++|++++| .++......+..+++|+.|+++++.
T Consensus 4 C~~~~l~~l~~l~~~~~~l~~i-p~~~---~~~l~~L~L~~N---------~l~~~~~~~~~~l~~L~~L~L~~n~---- 66 (290)
T 1p9a_G 4 CEVSKVASHLEVNCDKRNLTAL-PPDL---PKDTTILHLSEN---------LLYTFSLATLMPYTRLTQLNLDRAE---- 66 (290)
T ss_dssp SEEECSTTCCEEECTTSCCSSC-CSCC---CTTCCEEECTTS---------CCSEEEGGGGTTCTTCCEEECTTSC----
T ss_pred ccccccCCccEEECCCCCCCcC-CCCC---CCCCCEEEcCCC---------cCCccCHHHhhcCCCCCEEECCCCc----
Confidence 4577889999999998777632 1111 368999999997 3444444567788999999998853
Q ss_pred CCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccC
Q 015585 91 GTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLW 170 (404)
Q Consensus 91 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 170 (404)
+..+... ..+++|+.|+++++ .++. +...+..+++|+.|+++++. ++... ...+..+++|+.|++++
T Consensus 67 --l~~~~~~------~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N~-l~~l~-~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 67 --LTKLQVD------GTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNR-LTSLP-LGALRGLGELQELYLKG 133 (290)
T ss_dssp --CCEEECC------SCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSC-CCCCC-SSTTTTCTTCCEEECTT
T ss_pred --cCcccCC------CCCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCCc-CcccC-HHHHcCCCCCCEEECCC
Confidence 2222211 35678888888874 3331 11123445666666666663 11100 01122445555555555
Q ss_pred CCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccC
Q 015585 171 CRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 224 (404)
Q Consensus 171 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 224 (404)
+. +.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.++
T Consensus 134 N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 134 NE-LKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CC-CCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 43 22111112234455555555552 333222223334455555555555443
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=1.4e-11 Score=101.86 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=81.6
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCC
Q 015585 135 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT 214 (404)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 214 (404)
++|+.|+++++. ++. +. -...+++|+.|+++++. +.. +..+..+++|++|+++++ .+....+..++.+++|+
T Consensus 44 ~~L~~L~l~~n~-i~~--l~-~l~~l~~L~~L~l~~n~-~~~--~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 44 NSLTYITLANIN-VTD--LT-GIEYAHNIKDLTINNIH-ATN--YNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HTCCEEEEESSC-CSC--CT-TGGGCTTCSEEEEESCC-CSC--CGGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCC
T ss_pred CCccEEeccCCC-ccC--hH-HHhcCCCCCEEEccCCC-CCc--chhhhcCCCCCEEEeECC-ccCcccChhhcCCCCCC
Confidence 566666666653 221 11 12355667777776653 221 224556777777777773 56555555666677777
Q ss_pred EEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCC
Q 015585 215 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGI 294 (404)
Q Consensus 215 ~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 294 (404)
+|++++|.+++.....+. .+++|++|++++|..+++.. .+ ..+++|++|+++++ .+++.. ....+++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~--~l-----~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L 183 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM--PL-----KTLPELKSLNIQFD-GVHDYR---GIEDFPKL 183 (197)
T ss_dssp EEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG--GG-----GGCSSCCEEECTTB-CCCCCT---TGGGCSSC
T ss_pred EEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH--hh-----cCCCCCCEEECCCC-CCcChH---HhccCCCC
Confidence 777777777664444443 36677777776664333321 12 24556666666664 333311 11234556
Q ss_pred ceEeecCC
Q 015585 295 IDLCVRSC 302 (404)
Q Consensus 295 ~~L~l~~~ 302 (404)
+.|++++|
T Consensus 184 ~~L~l~~N 191 (197)
T 4ezg_A 184 NQLYAFSQ 191 (197)
T ss_dssp CEEEECBC
T ss_pred CEEEeeCc
Confidence 66666555
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.18 E-value=9.1e-12 Score=108.67 Aligned_cols=177 Identities=14% Similarity=0.105 Sum_probs=87.3
Q ss_pred CCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCC
Q 015585 41 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS 120 (404)
Q Consensus 41 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 120 (404)
+++|++|++.++. ++ .+..+..+++|++|+++++. +..+. ....+++|++|+++++
T Consensus 40 l~~L~~L~l~~~~---------i~--~~~~l~~l~~L~~L~l~~n~------l~~~~------~l~~l~~L~~L~L~~n- 95 (272)
T 3rfs_A 40 LNSIDQIIANNSD---------IK--SVQGIQYLPNVRYLALGGNK------LHDIS------ALKELTNLTYLILTGN- 95 (272)
T ss_dssp HTTCCEEECTTSC---------CC--CCTTGGGCTTCCEEECTTSC------CCCCG------GGTTCTTCCEEECTTS-
T ss_pred ccceeeeeeCCCC---------cc--cccccccCCCCcEEECCCCC------CCCch------hhcCCCCCCEEECCCC-
Confidence 4566666666542 11 12234556666666665542 11111 1134556666666653
Q ss_pred CCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCC
Q 015585 121 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIA 200 (404)
Q Consensus 121 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 200 (404)
.++... ...+..+++|+.|+++++. ++... ......+++|+.|+++++. +.......+..+++|++|+++++ .++
T Consensus 96 ~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~ 170 (272)
T 3rfs_A 96 QLQSLP-NGVFDKLTNLKELVLVENQ-LQSLP-DGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYN-QLQ 170 (272)
T ss_dssp CCCCCC-TTTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred ccCccC-hhHhcCCcCCCEEECCCCc-CCccC-HHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCC-CcC
Confidence 222111 1113345666666666653 21100 0112345667777776653 33211222345677777777764 444
Q ss_pred hHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585 201 DTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 247 (404)
Q Consensus 201 ~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 247 (404)
......+..+++|+.|++++|.++.... .....+++|+.|++++++
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCC
Confidence 3333334566777777777776553211 112246677777777665
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.15 E-value=1.2e-11 Score=102.34 Aligned_cols=150 Identities=20% Similarity=0.198 Sum_probs=73.1
Q ss_pred CCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCE
Q 015585 161 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 240 (404)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~ 240 (404)
++|+.|+++++. +.+ +..+..+++|++|++++| .+.. +..+..+++|++|++++|.+++.....+.
T Consensus 44 ~~L~~L~l~~n~-i~~--l~~l~~l~~L~~L~l~~n-~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-------- 109 (197)
T 4ezg_A 44 NSLTYITLANIN-VTD--LTGIEYAHNIKDLTINNI-HATN--YNPISGLSNLERLRIMGKDVTSDKIPNLS-------- 109 (197)
T ss_dssp HTCCEEEEESSC-CSC--CTTGGGCTTCSEEEEESC-CCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCT--------
T ss_pred CCccEEeccCCC-ccC--hHHHhcCCCCCEEEccCC-CCCc--chhhhcCCCCCEEEeECCccCcccChhhc--------
Confidence 456666666653 221 113445666666666664 3322 22444555566666655554432222211
Q ss_pred EeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCc
Q 015585 241 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQ 320 (404)
Q Consensus 241 L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 320 (404)
.+++|++|+++++ .+++.....+ ..+++|+.|++++|..+++.. .+.
T Consensus 110 -----------------------~l~~L~~L~Ls~n-~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~l~------ 156 (197)
T 4ezg_A 110 -----------------------GLTSLTLLDISHS-AHDDSILTKI-NTLPKVNSIDLSYNGAITDIM--PLK------ 156 (197)
T ss_dssp -----------------------TCTTCCEEECCSS-BCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--GGG------
T ss_pred -----------------------CCCCCCEEEecCC-ccCcHhHHHH-hhCCCCCEEEccCCCCccccH--hhc------
Confidence 3445555555553 3433222222 234556666665553233321 122
Q ss_pred ccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccc
Q 015585 321 EKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRL 363 (404)
Q Consensus 321 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l 363 (404)
.+++|+.|++++| .++... .+. .+++|+.|++++|.+
T Consensus 157 -~l~~L~~L~l~~n-~i~~~~--~l~--~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 157 -TLPELKSLNIQFD-GVHDYR--GIE--DFPKLNQLYAFSQTI 193 (197)
T ss_dssp -GCSSCCEEECTTB-CCCCCT--TGG--GCSSCCEEEECBC--
T ss_pred -CCCCCCEEECCCC-CCcChH--Hhc--cCCCCCEEEeeCccc
Confidence 4677777777774 444322 222 467777777777775
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.15 E-value=2.2e-12 Score=110.31 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=29.4
Q ss_pred CCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecc
Q 015585 18 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTR 84 (404)
Q Consensus 18 ~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 84 (404)
+|++|+++++.++......+ ..+++|++|++++|. .++......+..+++|++|++++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~n~--------~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAF-SNLPNISRIYVSIDV--------TLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp TCCEEEEESCCCSEECTTTT-TTCTTCCEEEEECCS--------SCCEECTTTEESCTTCCEEEEEE
T ss_pred cccEEEEeCCcceEECHHHc-cCCCCCcEEeCCCCC--------CcceeCHhHcCCCcCCcEEECCC
Confidence 56666666655553222222 236666666666652 12222222345566666666654
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.15 E-value=5.5e-11 Score=104.71 Aligned_cols=167 Identities=22% Similarity=0.218 Sum_probs=99.4
Q ss_pred CCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCC
Q 015585 41 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS 120 (404)
Q Consensus 41 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 120 (404)
+++|++|++++|. +.. +..+..+++|+.|+++++. +..+.. ...+++|+.|+++++
T Consensus 45 l~~L~~L~l~~~~---------i~~--~~~~~~l~~L~~L~L~~n~------l~~~~~------l~~l~~L~~L~l~~n- 100 (291)
T 1h6t_A 45 LNSIDQIIANNSD---------IKS--VQGIQYLPNVTKLFLNGNK------LTDIKP------LANLKNLGWLFLDEN- 100 (291)
T ss_dssp HHTCCEEECTTSC---------CCC--CTTGGGCTTCCEEECCSSC------CCCCGG------GTTCTTCCEEECCSS-
T ss_pred cCcccEEEccCCC---------ccc--ChhHhcCCCCCEEEccCCc------cCCCcc------cccCCCCCEEECCCC-
Confidence 5567777777652 221 1235566777777776643 111211 245677777777764
Q ss_pred CCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCC
Q 015585 121 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIA 200 (404)
Q Consensus 121 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 200 (404)
.++. +.. +..+++|+.|+++++. ++.. .....+++|+.|+++++. +.. +..+..+++|++|+++++ .+.
T Consensus 101 ~l~~--~~~-l~~l~~L~~L~L~~n~-i~~~---~~l~~l~~L~~L~l~~n~-l~~--~~~l~~l~~L~~L~L~~N-~l~ 169 (291)
T 1h6t_A 101 KVKD--LSS-LKDLKKLKSLSLEHNG-ISDI---NGLVHLPQLESLYLGNNK-ITD--ITVLSRLTKLDTLSLEDN-QIS 169 (291)
T ss_dssp CCCC--GGG-GTTCTTCCEEECTTSC-CCCC---GGGGGCTTCCEEECCSSC-CCC--CGGGGGCTTCSEEECCSS-CCC
T ss_pred cCCC--Chh-hccCCCCCEEECCCCc-CCCC---hhhcCCCCCCEEEccCCc-CCc--chhhccCCCCCEEEccCC-ccc
Confidence 3332 111 4556777777777774 2221 123356778888887764 332 245567788888888774 444
Q ss_pred hHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585 201 DTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 247 (404)
Q Consensus 201 ~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 247 (404)
... .+..+++|+.|++++|.+++. .. ...+++|+.|+++++.
T Consensus 170 ~~~--~l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 170 DIV--PLAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCG--GGTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEEEEEEE
T ss_pred cch--hhcCCCccCEEECCCCcCCCC--hh-hccCCCCCEEECcCCc
Confidence 332 266778888888888877653 22 2357788888887765
No 99
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.13 E-value=3.5e-10 Score=102.09 Aligned_cols=88 Identities=13% Similarity=0.141 Sum_probs=57.3
Q ss_pred cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH---HhCCCCceEeecCCCCCCHHHH
Q 015585 234 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYVTDASV 310 (404)
Q Consensus 234 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~ 310 (404)
.+|+|++|.+.+|. +++.+...++. .+.+|+|++|+++.+ .+++.+...+. +.+++|+.|++++|. +++.++
T Consensus 250 ~~p~Lr~L~L~~~~-i~~~~~~~la~--a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~ 324 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE-EQNVVVEMFLE--SDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMK 324 (362)
T ss_dssp TCTTCCEEEEESCT-THHHHHHHHHH--CSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHH
T ss_pred CCCCcCEEeCCCCC-CchHHHHHHHh--CccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHH
Confidence 35677777777665 55544444431 135678888888764 77777766654 346788888888884 888888
Q ss_pred HHHHhhCCCcccCCCCcEEeccCC
Q 015585 311 EALARKQPDQEKSKQLRRLDLCNC 334 (404)
Q Consensus 311 ~~l~~~~~~~~~~~~L~~L~l~~~ 334 (404)
..+... + ...++++..
T Consensus 325 ~~l~~a------l--g~~~~~~~~ 340 (362)
T 2ra8_A 325 KELQKS------L--PMKIDVSDS 340 (362)
T ss_dssp HHHHHH------C--CSEEECCSB
T ss_pred HHHHHH------c--CCEEEecCC
Confidence 888862 2 244677663
No 100
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.12 E-value=2.6e-10 Score=102.89 Aligned_cols=166 Identities=13% Similarity=0.081 Sum_probs=113.0
Q ss_pred hhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHh-cCCCcCEEeecCCCC--CcH---HHHH
Q 015585 182 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQ-GNLPIMNLCLRGCKR--VTD---KGIS 255 (404)
Q Consensus 182 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~-~~~~L~~L~l~~~~~--l~~---~~~~ 255 (404)
+..+|+|++|.++++.... +..+ ..++|++|++..+.+++..+..++. .+|+|++|+++.+.. ..+ ..+.
T Consensus 168 l~~~P~L~~L~L~g~~~l~---l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS---IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB---CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HhcCCCCcEEEEeCCCCce---eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3466777777777642221 1122 3678888888888888888877764 578888888853210 111 1122
Q ss_pred HHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHH--hCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccC
Q 015585 256 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA--AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCN 333 (404)
Q Consensus 256 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 333 (404)
... ....+|+|++|++..| .+.+.+...+.+ .+|+|+.|+|+.| .+++.+...++..++ .+++|+.|++++
T Consensus 244 ~~l--~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~---~l~~L~~L~L~~ 316 (362)
T 2ra8_A 244 PLF--SKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVD---KIKHLKFINMKY 316 (362)
T ss_dssp GGS--CTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHH---HHTTCSEEECCS
T ss_pred HHH--hcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcc---cCCcceEEECCC
Confidence 222 1135789999999886 677666555554 4689999999888 499998888876333 478999999998
Q ss_pred CCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585 334 CIGLSVDSLRWVKRPSFRGLHWLGIGQTR 362 (404)
Q Consensus 334 ~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 362 (404)
| .+++.++..+... + ...++++++.
T Consensus 317 n-~i~d~~~~~l~~a-l--g~~~~~~~~~ 341 (362)
T 2ra8_A 317 N-YLSDEMKKELQKS-L--PMKIDVSDSQ 341 (362)
T ss_dssp B-BCCHHHHHHHHHH-C--CSEEECCSBC
T ss_pred C-cCCHHHHHHHHHH-c--CCEEEecCCc
Confidence 6 7999988888631 2 3557887766
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.12 E-value=6.2e-13 Score=113.80 Aligned_cols=179 Identities=10% Similarity=0.016 Sum_probs=83.3
Q ss_pred CCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCc
Q 015585 159 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 238 (404)
Q Consensus 159 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L 238 (404)
.+++|+.|+++++..+.......+..+++|++|++++|+.+.......+..+++|++|++++|.++. +.. ...+++|
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L 129 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYST 129 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBC
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-ccccccc
Confidence 3455555555554312211111234566666666665334444333444556667777766665543 111 2234555
Q ss_pred C---EEeecCCCCCcHHHHHHHHhhcCCCCCCcc-EEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHH
Q 015585 239 M---NLCLRGCKRVTDKGISHLLCVGGTISQSLT-TLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALA 314 (404)
Q Consensus 239 ~---~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (404)
+ .|+++++..++......+ ..+++|+ +|+++++ .++......+ .. ++|+.|++++|+.++......+.
T Consensus 130 ~~L~~L~l~~N~~l~~i~~~~~-----~~l~~L~~~L~l~~n-~l~~i~~~~~-~~-~~L~~L~L~~n~~l~~i~~~~~~ 201 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPVNAF-----QGLCNETLTLKLYNN-GFTSVQGYAF-NG-TKLDAVYLNKNKYLTVIDKDAFG 201 (239)
T ss_dssp CSEEEEEEESCTTCCEECTTTT-----TTTBSSEEEEECCSC-CCCEECTTTT-TT-CEEEEEECTTCTTCCEECTTTTT
T ss_pred ccccEEECCCCcchhhcCcccc-----cchhcceeEEEcCCC-CCcccCHhhc-CC-CCCCEEEcCCCCCcccCCHHHhh
Confidence 5 666666622332211111 2455666 7776664 3332111111 11 45666666666323321111122
Q ss_pred hhCCCcccC-CCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCc
Q 015585 315 RKQPDQEKS-KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQT 361 (404)
Q Consensus 315 ~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 361 (404)
.+ ++|+.|+++++ .++... ...+++|+.|.++++
T Consensus 202 -------~l~~~L~~L~l~~N-~l~~l~-----~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 202 -------GVYSGPSLLDVSQT-SVTALP-----SKGLEHLKELIARNT 236 (239)
T ss_dssp -------TCSBCCSEEECTTC-CCCCCC-----CTTCTTCSEEECTTC
T ss_pred -------ccccCCcEEECCCC-ccccCC-----hhHhccCceeeccCc
Confidence 35 66677777663 443211 113566666666654
No 102
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.12 E-value=2.3e-09 Score=87.36 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=75.4
Q ss_pred hcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHH---hCCCCceEeecCCCCCCHHH
Q 015585 233 QGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVTDAS 309 (404)
Q Consensus 233 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~ 309 (404)
...++|++|++++|..+++.+...+.... ...++|++|+++++ .+++.+...+.+ ..+.|++|+|++|. +++.+
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g 109 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG 109 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence 34455555555555225555444433110 23456777777665 566666544433 34677777777774 77777
Q ss_pred HHHHHhhCCCcccCCCCcEEec--cCCCCCCHHHHHhhhc--CCCCcccEEecCCccc
Q 015585 310 VEALARKQPDQEKSKQLRRLDL--CNCIGLSVDSLRWVKR--PSFRGLHWLGIGQTRL 363 (404)
Q Consensus 310 ~~~l~~~~~~~~~~~~L~~L~l--~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~l 363 (404)
...++..+. .+++|+.|++ ++ +.+++.+...+.. ...++|++|++++|.+
T Consensus 110 ~~~l~~~L~---~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQ---SNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGG---GCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHH---hCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 777777666 5677888888 44 4777776655431 2367788888887776
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.09 E-value=2e-10 Score=101.08 Aligned_cols=146 Identities=24% Similarity=0.235 Sum_probs=75.7
Q ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCC
Q 015585 106 EGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASS 185 (404)
Q Consensus 106 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 185 (404)
..+++|+.|+++++ .++... . +..+++|+.|+++++. ++. +.. ...+++|+.|+++++. +.. +..+..+
T Consensus 65 ~~l~~L~~L~L~~n-~l~~~~--~-l~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~L~~L~L~~n~-i~~--~~~l~~l 133 (291)
T 1h6t_A 65 QYLPNVTKLFLNGN-KLTDIK--P-LANLKNLGWLFLDENK-VKD--LSS-LKDLKKLKSLSLEHNG-ISD--INGLVHL 133 (291)
T ss_dssp GGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSC-CCC--GGG-GTTCTTCCEEECTTSC-CCC--CGGGGGC
T ss_pred hcCCCCCEEEccCC-ccCCCc--c-cccCCCCCEEECCCCc-CCC--Chh-hccCCCCCEEECCCCc-CCC--ChhhcCC
Confidence 34566666666664 232211 1 4455666666666664 222 111 3355666666666654 222 2334456
Q ss_pred CCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCC
Q 015585 186 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 265 (404)
Q Consensus 186 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 265 (404)
++|++|+++++ .+... ..+..+++|+.|++++|.+++... ...+++|++|++++|. +++. ..+ ..+
T Consensus 134 ~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~-i~~l--~~l-----~~l 199 (291)
T 1h6t_A 134 PQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH-ISDL--RAL-----AGL 199 (291)
T ss_dssp TTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCBC--GGG-----TTC
T ss_pred CCCCEEEccCC-cCCcc--hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCc-CCCC--hhh-----ccC
Confidence 66666666663 33332 345556666666666665554221 2345666666666664 3332 112 245
Q ss_pred CCccEEecCCC
Q 015585 266 QSLTTLDLGYM 276 (404)
Q Consensus 266 ~~L~~L~l~~~ 276 (404)
++|+.|+++++
T Consensus 200 ~~L~~L~l~~n 210 (291)
T 1h6t_A 200 KNLDVLELFSQ 210 (291)
T ss_dssp TTCSEEEEEEE
T ss_pred CCCCEEECcCC
Confidence 66666666653
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.07 E-value=1.6e-10 Score=111.64 Aligned_cols=80 Identities=25% Similarity=0.201 Sum_probs=34.7
Q ss_pred CCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCc
Q 015585 159 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 238 (404)
Q Consensus 159 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L 238 (404)
.+++|+.|++++|. +.. +..+..+++|+.|+|++| .+..... +..+++|+.|+|++|.+++. .. ...+++|
T Consensus 129 ~l~~L~~L~Ls~N~-l~~--l~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~-l~~l~~L 199 (605)
T 1m9s_A 129 HLPQLESLYLGNNK-ITD--ITVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISDL--RA-LAGLKNL 199 (605)
T ss_dssp GCTTCSEEECCSSC-CCC--CGGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCBC--GG-GTTCTTC
T ss_pred CCCccCEEECCCCc-cCC--chhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCCC--hH-HccCCCC
Confidence 44455555555443 221 123344555555555543 3322111 44455555555555544432 11 1234555
Q ss_pred CEEeecCCC
Q 015585 239 MNLCLRGCK 247 (404)
Q Consensus 239 ~~L~l~~~~ 247 (404)
+.|++++|.
T Consensus 200 ~~L~L~~N~ 208 (605)
T 1m9s_A 200 DVLELFSQE 208 (605)
T ss_dssp SEEECCSEE
T ss_pred CEEEccCCc
Confidence 555555443
No 105
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.07 E-value=1.5e-09 Score=88.50 Aligned_cols=133 Identities=16% Similarity=0.096 Sum_probs=103.7
Q ss_pred HHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHh---CCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcE
Q 015585 252 KGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA---GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRR 328 (404)
Q Consensus 252 ~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ 328 (404)
..+.... ...+.|++|+++++..+++.++..+... .++|++|+|++|. +++.+...++..+. ..++|+.
T Consensus 26 ~~l~~~l----~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~---~n~~L~~ 97 (185)
T 1io0_A 26 ETLKRIQ----NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLK---VNNTLKS 97 (185)
T ss_dssp HHHHHHH----TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHH---HCSSCCE
T ss_pred HHHHHHH----hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHH---hCCCcCE
Confidence 3445555 5788999999999658999887776554 5899999999995 99999988888666 6789999
Q ss_pred EeccCCCCCCHHHHHhhh--cCCCCcccEEec--CCccccCCChHHHHHHHhcCCccE-EEecccccccc
Q 015585 329 LDLCNCIGLSVDSLRWVK--RPSFRGLHWLGI--GQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 393 (404)
Q Consensus 329 L~l~~~~~i~~~~~~~l~--~~~~~~L~~L~l--~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~ 393 (404)
|++++| .+++.+...+. ....++|++|++ ++|.+...+...+....+..+.++ +++.+|.++-.
T Consensus 98 L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 98 LNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp EECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred EECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 999994 89998877664 235789999999 889985433334444456678888 99999988643
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.03 E-value=2.7e-10 Score=110.15 Aligned_cols=173 Identities=22% Similarity=0.210 Sum_probs=105.1
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585 13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT 92 (404)
Q Consensus 13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 92 (404)
...+++|+.|+++++.+... ..+ ..+++|++|+|++|. +.. +..+..+++|+.|+++++..
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l-~~l~~L~~L~Ls~N~---------l~~--~~~l~~l~~L~~L~Ls~N~l----- 99 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGI-QYLPNVTKLFLNGNK---------LTD--IKPLTNLKNLGWLFLDENKI----- 99 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTG-GGCTTCCEEECTTSC---------CCC--CGGGGGCTTCCEEECCSSCC-----
T ss_pred hhcCCCCCEEECcCCCCCCC--hHH-ccCCCCCEEEeeCCC---------CCC--ChhhccCCCCCEEECcCCCC-----
Confidence 45667777888877666542 233 347788888887763 222 12266777888888877531
Q ss_pred ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585 93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 172 (404)
Q Consensus 93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 172 (404)
..+. ....+++|+.|+++++ .+... . -+..+++|+.|+++++. ++.. .....+++|+.|++++|.
T Consensus 100 -~~l~------~l~~l~~L~~L~Ls~N-~l~~l--~-~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 100 -KDLS------SLKDLKKLKSLSLEHN-GISDI--N-GLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp -CCCT------TSTTCTTCCEEECTTS-CCCCC--G-GGGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSC
T ss_pred -CCCh------hhccCCCCCEEEecCC-CCCCC--c-cccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCc
Confidence 1111 1245677888888775 33321 1 14566788888887775 3221 233467778888887765
Q ss_pred CCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCH
Q 015585 173 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITD 225 (404)
Q Consensus 173 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 225 (404)
+... ..+..+++|+.|+|++| .+.. +..+..+++|+.|++++|.+..
T Consensus 165 -l~~~--~~l~~l~~L~~L~Ls~N-~i~~--l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 165 -ISDI--VPLAGLTKLQNLYLSKN-HISD--LRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -CCCC--GGGTTCTTCCEEECCSS-CCCB--CGGGTTCTTCSEEECCSEEEEC
T ss_pred -CCCc--hhhccCCCCCEEECcCC-CCCC--ChHHccCCCCCEEEccCCcCcC
Confidence 3321 12567778888888774 4543 2456677788888887776543
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.97 E-value=6.3e-11 Score=102.01 Aligned_cols=89 Identities=13% Similarity=0.045 Sum_probs=49.5
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHH
Q 015585 264 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR 343 (404)
Q Consensus 264 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 343 (404)
.+++|++|+++++ .++..... ....+++|+.|++++|. ++......+. .+++|+.|+++++ .++.....
T Consensus 105 ~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~ 173 (251)
T 3m19_A 105 HLTQLDKLYLGGN-QLKSLPSG-VFDRLTKLKELRLNTNQ-LQSIPAGAFD-------KLTNLQTLSLSTN-QLQSVPHG 173 (251)
T ss_dssp TCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCSS-CCSCCCTT
T ss_pred ccCCCCEEEcCCC-cCCCcChh-HhccCCcccEEECcCCc-CCccCHHHcC-------cCcCCCEEECCCC-cCCccCHH
Confidence 3455666666553 33321110 11235677777777764 4422111122 4778888888884 55543333
Q ss_pred hhhcCCCCcccEEecCCccccC
Q 015585 344 WVKRPSFRGLHWLGIGQTRLAS 365 (404)
Q Consensus 344 ~l~~~~~~~L~~L~l~~~~l~~ 365 (404)
.+. .+++|+.|++++|++..
T Consensus 174 ~~~--~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 174 AFD--RLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTT--TCTTCCEEECCSCCBCT
T ss_pred HHh--CCCCCCEEEeeCCceeC
Confidence 332 47888889988888864
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.93 E-value=6.4e-10 Score=95.65 Aligned_cols=178 Identities=16% Similarity=0.144 Sum_probs=91.2
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 96 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 96 (404)
...++++++++.+... +..+ .+++++|++++|. ++......+..+++|++|+++++. +..+
T Consensus 14 ~~~~~l~~~~~~l~~~-p~~~---~~~l~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~~ 74 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSV-PSGI---PADTEKLDLQSTG---------LATLSDATFRGLTKLTWLNLDYNQ------LQTL 74 (251)
T ss_dssp GGGTEEECTTCCCSSC-CSCC---CTTCCEEECTTSC---------CCCCCTTTTTTCTTCCEEECTTSC------CCCC
T ss_pred CCCeEEecCCCCcccc-CCCC---CCCCCEEEccCCC---------cCccCHhHhcCcccCCEEECCCCc------CCcc
Confidence 4567777776655521 1111 2578888888863 333333446677888888887753 2222
Q ss_pred ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585 97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 176 (404)
Q Consensus 97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 176 (404)
....+ ..+++|+.|+++++ .++... ...+..+++|+.|+++++. ++... ...+..+++|+.|+++++. +..
T Consensus 75 ~~~~~----~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~ 145 (251)
T 3m19_A 75 SAGVF----DDLTELGTLGLANN-QLASLP-LGVFDHLTQLDKLYLGGNQ-LKSLP-SGVFDRLTKLKELRLNTNQ-LQS 145 (251)
T ss_dssp CTTTT----TTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCC
T ss_pred CHhHh----ccCCcCCEEECCCC-cccccC-hhHhcccCCCCEEEcCCCc-CCCcC-hhHhccCCcccEEECcCCc-CCc
Confidence 22211 45677888887774 333211 1123445667777776663 22100 0112245566666666543 222
Q ss_pred HHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCcc
Q 015585 177 ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI 223 (404)
Q Consensus 177 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 223 (404)
.....+..+++|++|+++++ .+.......+..+++|+.|++.+|.+
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 11122345566666666652 44433333444556666666666544
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.90 E-value=7.1e-10 Score=87.12 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=35.4
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHH---HHHhhC
Q 015585 108 CKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSET---VKKLAS 184 (404)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~~ 184 (404)
+++|+.|+++++ .++.. +......+++|+.|+++++. ++..........+++|+.|+++++. +.... ...+..
T Consensus 63 l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 63 LNKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKL 138 (149)
T ss_dssp CTTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHH
T ss_pred CCCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHH
Confidence 444555555443 22211 22223344555555555553 3322222223345555555555543 22111 123445
Q ss_pred CCCCCEEecc
Q 015585 185 SRNLEVLDLG 194 (404)
Q Consensus 185 ~~~L~~L~l~ 194 (404)
+++|++|+++
T Consensus 139 l~~L~~L~l~ 148 (149)
T 2je0_A 139 LPQLTYLDGY 148 (149)
T ss_dssp CTTCCEETTB
T ss_pred CCCcccccCC
Confidence 5666666553
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.88 E-value=1.4e-09 Score=85.48 Aligned_cols=60 Identities=25% Similarity=0.350 Sum_probs=25.5
Q ss_pred CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585 184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 247 (404)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 247 (404)
.+++|++|+++++ .+... ..+..+++|++|++++|.+++. +......+++|++|++++|.
T Consensus 40 ~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~ 99 (149)
T 2je0_A 40 EFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNK 99 (149)
T ss_dssp TCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSC
T ss_pred hcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCc
Confidence 3444555555442 23222 3334444555555555444432 12222234555555555444
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.85 E-value=4.8e-10 Score=97.05 Aligned_cols=166 Identities=18% Similarity=0.204 Sum_probs=81.7
Q ss_pred CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccc
Q 015585 16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 95 (404)
Q Consensus 16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 95 (404)
+.++..++++.+.+.+.. .+. .+++|++|++++|. ++. +..+..+++|+.|+++++. +..
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~-~l~~L~~L~l~~n~---------i~~--l~~l~~l~~L~~L~L~~N~------i~~ 77 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQK-ELSGVQNFNGDNSN---------IQS--LAGMQFFTNLKELHLSHNQ------ISD 77 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHH-HHTTCSEEECTTSC---------CCC--CTTGGGCTTCCEEECCSSC------CCC
T ss_pred HHHHHHHHhcCCCccccc--chh-hcCcCcEEECcCCC---------ccc--chHHhhCCCCCEEECCCCc------cCC
Confidence 344555566655555322 222 36777777777752 221 2245566777777776642 111
Q ss_pred cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585 96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 175 (404)
Q Consensus 96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 175 (404)
+.. ...+++|+.|+++++ .++.. .. +. . ++|+.|+++++. +.
T Consensus 78 ~~~------l~~l~~L~~L~L~~N-~l~~l--~~--------------------------~~-~-~~L~~L~L~~N~-l~ 119 (263)
T 1xeu_A 78 LSP------LKDLTKLEELSVNRN-RLKNL--NG--------------------------IP-S-ACLSRLFLDNNE-LR 119 (263)
T ss_dssp CGG------GTTCSSCCEEECCSS-CCSCC--TT--------------------------CC-C-SSCCEEECCSSC-CS
T ss_pred Chh------hccCCCCCEEECCCC-ccCCc--Cc--------------------------cc-c-CcccEEEccCCc-cC
Confidence 111 245566666666663 22210 00 00 1 445555555543 22
Q ss_pred HHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585 176 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 247 (404)
Q Consensus 176 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 247 (404)
. +..+..+++|++|+++++ .+++. ..+..+++|+.|++++|.+++. .....+++|+.|+++++.
T Consensus 120 ~--~~~l~~l~~L~~L~Ls~N-~i~~~--~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 120 D--TDSLIHLKNLEILSIRNN-KLKSI--VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp B--SGGGTTCTTCCEEECTTS-CCCBC--GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred C--ChhhcCcccccEEECCCC-cCCCC--hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc
Confidence 1 123445566666666553 34332 2445556666666666655543 112245666666666554
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.80 E-value=2.1e-09 Score=92.98 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=39.8
Q ss_pred CCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcC
Q 015585 160 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 239 (404)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~ 239 (404)
+++|+.|+++++. +.. +..+..+++|++|+++++ .+..... +..+++|+.|++++|.+++. ..+. . ++|+
T Consensus 40 l~~L~~L~l~~n~-i~~--l~~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~~l--~~~~-~-~~L~ 109 (263)
T 1xeu_A 40 LSGVQNFNGDNSN-IQS--LAGMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLKNL--NGIP-S-ACLS 109 (263)
T ss_dssp HTTCSEEECTTSC-CCC--CTTGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCSCC--TTCC-C-SSCC
T ss_pred cCcCcEEECcCCC-ccc--chHHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccCCc--Cccc-c-Cccc
Confidence 4566666666653 221 123445666666666663 3433221 55566666666666655431 1111 1 4555
Q ss_pred EEeecCCC
Q 015585 240 NLCLRGCK 247 (404)
Q Consensus 240 ~L~l~~~~ 247 (404)
+|++++|.
T Consensus 110 ~L~L~~N~ 117 (263)
T 1xeu_A 110 RLFLDNNE 117 (263)
T ss_dssp EEECCSSC
T ss_pred EEEccCCc
Confidence 56555554
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.78 E-value=3.9e-10 Score=102.55 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=47.0
Q ss_pred CCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhc-CCCCcccEEecCCccccCCChH
Q 015585 291 GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR-PSFRGLHWLGIGQTRLASKGNP 369 (404)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~-~~~~~L~~L~l~~~~l~~~~~~ 369 (404)
+++|+.|++++|. ++......+. .+++|+.|+++++ .++......+.. ..+++|+.|++++|.++.....
T Consensus 111 l~~L~~L~L~~N~-i~~~~~~~~~-------~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 111 LQALEVLLLYNNH-IVVVDRNAFE-------DMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTT-------TCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred CcCCCEEECCCCc-ccEECHHHhC-------CcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 4566666666553 3321111122 4667777777763 454322222210 2367777777777777655433
Q ss_pred HHHHHHhcCCcc--E-EEeccccccccC
Q 015585 370 VITEIHNERPWL--T-FCLDGCEIGCHD 394 (404)
Q Consensus 370 ~~~~~~~~~~~l--~-l~~~~~~~~~~~ 394 (404)
.+. ..|.+ + +.+.+|++.|++
T Consensus 182 ~~~----~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 182 DLQ----KLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp HHH----HSCHHHHTTEECCSSCEECCH
T ss_pred Hhh----hccHhhcceEEecCCCccCCc
Confidence 332 23432 3 777777777764
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.78 E-value=1e-09 Score=88.12 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=45.8
Q ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHH---HHHhh
Q 015585 107 GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSET---VKKLA 183 (404)
Q Consensus 107 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~ 183 (404)
.+++|+.|+++++ .+... +......+++|+.|+++++. ++..........+++|+.|+++++. +.... ...+.
T Consensus 69 ~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~ 144 (168)
T 2ell_A 69 KLPKLKKLELSEN-RIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFK 144 (168)
T ss_dssp CCSSCCEEEEESC-CCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHT
T ss_pred cCCCCCEEECcCC-cCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHH
Confidence 4556666666654 22221 22334456677777777664 3321111223456777777777764 22211 12455
Q ss_pred CCCCCCEEeccCC
Q 015585 184 SSRNLEVLDLGGC 196 (404)
Q Consensus 184 ~~~~L~~L~l~~~ 196 (404)
.+++|++|++++|
T Consensus 145 ~l~~L~~L~l~~n 157 (168)
T 2ell_A 145 LLPQLTYLDGYDR 157 (168)
T ss_dssp TCSSCCEETTEET
T ss_pred hCccCcEecCCCC
Confidence 6777888877765
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.75 E-value=2.9e-10 Score=109.24 Aligned_cols=38 Identities=24% Similarity=0.151 Sum_probs=28.2
Q ss_pred ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCC
Q 015585 13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDR 52 (404)
Q Consensus 13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~ 52 (404)
+..+++|+.|+|+++.+. ..+..+. .+++|++|+++++
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~-~l~~L~~L~l~~n 382 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELE-SCKELQELEPENK 382 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHH-HHHHHHHHCTTCH
T ss_pred cccCccceeccCChhhHH-hhHHHHH-HHHHHHHhccccc
Confidence 356889999999987775 3444554 4889999998664
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.75 E-value=8.9e-10 Score=88.46 Aligned_cols=88 Identities=20% Similarity=0.165 Sum_probs=39.0
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHH-HHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHH
Q 015585 264 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDA-SVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 342 (404)
Q Consensus 264 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 342 (404)
.+++|++|+++++ .++.. +......+++|+.|++++|. +++. .+..+. .+++|+.|++++| .++....
T Consensus 69 ~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~-------~l~~L~~L~l~~N-~l~~~~~ 137 (168)
T 2ell_A 69 KLPKLKKLELSEN-RIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLK-------KLECLKSLDLFNC-EVTNLND 137 (168)
T ss_dssp CCSSCCEEEEESC-CCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGS-------SCSCCCEEECCSS-GGGTSTT
T ss_pred cCCCCCEEECcCC-cCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHh-------cCCCCCEEEeeCC-cCcchHH
Confidence 3455555555553 23221 11222235566666666553 3331 111222 3556666666654 3332111
Q ss_pred ---HhhhcCCCCcccEEecCCcccc
Q 015585 343 ---RWVKRPSFRGLHWLGIGQTRLA 364 (404)
Q Consensus 343 ---~~l~~~~~~~L~~L~l~~~~l~ 364 (404)
..+ ..+|+|+.|++++|.+.
T Consensus 138 ~~~~~~--~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 138 YRESVF--KLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHHH--TTCSSCCEETTEETTSC
T ss_pred HHHHHH--HhCccCcEecCCCCChh
Confidence 112 23566666666666543
No 117
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.72 E-value=8.4e-08 Score=77.63 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=100.7
Q ss_pred HHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHH---hCCCCceEeecCC
Q 015585 226 SGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSC 302 (404)
Q Consensus 226 ~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~ 302 (404)
..+..+...-+.|++|+++++..+++.+...++.+. ..-..|+.|+++++ .+.+.+...+.+ .-+.|+.|+|+.|
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 356666666788999999886458988877665322 24568999999996 899988665543 3488999999999
Q ss_pred CCCCHHHHHHHHhhCCCcccCCCCcEEeccCC-C-CCCHHHHHhhh--cCCCCcccEEecCCccc
Q 015585 303 FYVTDASVEALARKQPDQEKSKQLRRLDLCNC-I-GLSVDSLRWVK--RPSFRGLHWLGIGQTRL 363 (404)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~-~-~i~~~~~~~l~--~~~~~~L~~L~l~~~~l 363 (404)
. |++.+..++++.+. ..+.|+.|+++++ . .+++.+...+. ....++|+.|+++.+.+
T Consensus 109 ~-Ig~~Ga~ala~aL~---~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 109 F-LTPELLARLLRSTL---VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp B-CCHHHHHHHHHHTT---TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred c-CCHHHHHHHHHHHh---hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 4 99999999999888 7889999999874 2 57776655443 12478999999987664
No 118
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.68 E-value=4.2e-07 Score=73.53 Aligned_cols=120 Identities=12% Similarity=0.132 Sum_probs=86.6
Q ss_pred hCCCCCCEEEccCC-ccCHHHHHHHHh---cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHH
Q 015585 208 SCLRKLTALNLTGA-DITDSGLSILAQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDG 283 (404)
Q Consensus 208 ~~~~~L~~L~l~~~-~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~ 283 (404)
..-+.|++|+++++ .+.+.+...+++ ....|+.|+|++|. +++.+...++... ..-+.|++|+++.+ .+++.|
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL-~~N~tL~~L~L~~N-~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELI-ETSPSLRVLNVESN-FLTPEL 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHH-HHCSSCCEEECCSS-BCCHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHH-hcCCccCeEecCCC-cCCHHH
Confidence 45678888888875 888888777776 34568888888886 8877655443211 23467888888884 788888
Q ss_pred HHHHHHhC---CCCceEeecCCC--CCCHHHHHHHHhhCCCcccCCCCcEEeccC
Q 015585 284 ILTIAAAG---IGIIDLCVRSCF--YVTDASVEALARKQPDQEKSKQLRRLDLCN 333 (404)
Q Consensus 284 ~~~l~~~~---~~L~~L~l~~~~--~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 333 (404)
...+.+.+ +.|++|+|+++. .+++.+...++..+. ..+.|+.|+++.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~---~N~tL~~L~l~~ 166 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE---ENESLLRVGISF 166 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH---HCSSCCEEECCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHH---hCCCcCeEeccC
Confidence 88777664 568888887652 478877766666555 678888888876
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.62 E-value=1.5e-09 Score=90.54 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=16.1
Q ss_pred CCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585 323 SKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 364 (404)
Q Consensus 323 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~ 364 (404)
+++|+.|++++++ ++ ..+++|++|+++.|.++
T Consensus 147 l~~L~~L~l~~N~-~~---------~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 147 LTSLQYIWLHDNP-WD---------CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp CTTCCEEECCSCC-BC---------CCTTTTHHHHHHHHHCT
T ss_pred CCCccEEEecCCC-ee---------cCCCCHHHHHHHHHhCC
Confidence 5566666666542 11 12455555555555543
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.60 E-value=1.4e-09 Score=98.45 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=17.2
Q ss_pred CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCC
Q 015585 17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDR 52 (404)
Q Consensus 17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~ 52 (404)
+++++|+|++|.++......+ ..+++|++|+|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N 64 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQN 64 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSS-TTCTTCCEEEEECC
T ss_pred CCCCEEEccCCcCCCcCHHHH-cCCCCCCEEECcCC
Confidence 456666666555542211112 23556666666655
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.60 E-value=2e-09 Score=90.47 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=78.7
Q ss_pred CCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHh
Q 015585 211 RKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA 290 (404)
Q Consensus 211 ~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 290 (404)
++++.|++++|.++...... ...+++|+.|+++++. +.......+ ..+++|++|+++++ .++.... .....
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~-~~~l~~L~~L~Ls~N~-i~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~l~~-~~f~~ 102 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGA-FSPYKKLRRIDLSNNQ-ISELAPDAF-----QGLRSLNSLVLYGN-KITELPK-SLFEG 102 (220)
T ss_dssp TTCCEEECCSSCCCEECTTS-STTCTTCCEEECCSSC-CCEECTTTT-----TTCSSCCEEECCSS-CCCCCCT-TTTTT
T ss_pred cCCCEEECCCCcCCCcCHhH-hhCCCCCCEEECCCCc-CCCcCHHHh-----hCCcCCCEEECCCC-cCCccCH-hHccC
Confidence 67899999888776422111 2246788888888776 443211222 35678888888875 4442111 11234
Q ss_pred CCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585 291 GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 364 (404)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~ 364 (404)
+++|+.|++++|. ++......+. .+++|+.|+++++ .++......+. .+++|+.|++++|++.
T Consensus 103 l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 103 LFSLQLLLLNANK-INCLRVDAFQ-------DLHNLNLLSLYDN-KLQTIAKGTFS--PLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCSS-CCSCCCTTTTT--TCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCC-CCEeCHHHcC-------CCCCCCEEECCCC-cCCEECHHHHh--CCCCCCEEEeCCCCcC
Confidence 6778888887774 4432222222 4677888888774 55543333332 3677788888777765
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=4.3e-08 Score=87.81 Aligned_cols=232 Identities=15% Similarity=0.167 Sum_probs=135.0
Q ss_pred CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCC--Ccccccccch----------hhhhhhcC--------CC
Q 015585 16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNT--EPLARLDLTS----------SGLQSLGS--------CH 75 (404)
Q Consensus 16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~--~~~~~~~~~~----------~~~~~l~~--------~~ 75 (404)
+++++.|.++++ +....+..+...+++|++|+|++|... .... ..+.. ..-..+.. |+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~-~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA-GTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS-SSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc-ccccccccccccccccCHHHhcccccccccccC
Confidence 577999999964 455566666655899999999987543 1000 00000 11122345 88
Q ss_pred CCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCC--CCHHHHHH-------------H----------
Q 015585 76 HLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK--VSDAGFAA-------------I---------- 130 (404)
Q Consensus 76 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~~~~-------------l---------- 130 (404)
+|+.|++.+. ...+.+.++ ..|++|+.+++..+.. +....+.. .
T Consensus 102 ~L~~l~L~~~-------i~~I~~~aF----~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 102 TLEKVILSEK-------IKNIEDAAF----KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp TCCC-CBCTT-------CCEECTTTT----TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred CCcEEECCcc-------ccchhHHHh----hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 8888888652 233444433 5678888888876421 11100000 0
Q ss_pred -HHhC--------------------------CCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhh
Q 015585 131 -LLSC--------------------------HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA 183 (404)
Q Consensus 131 -~~~~--------------------------~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 183 (404)
...| .++..+.+.+. +....+..+...+++|+.+++.++. +..-.-.++.
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~ 247 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFA 247 (329)
T ss_dssp CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTT
T ss_pred ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhh
Confidence 0011 22233333332 3444555555568999999999753 3332333466
Q ss_pred CCCCCCEEeccCCCCCChHHHHhhhCCCCCC-EEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcC
Q 015585 184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLT-ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGG 262 (404)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 262 (404)
.|++|+++++.. ++..-.-.++..+++|+ .+.+.. .++.-+-.+ +..|++|+.+.+..+. +...+-..+
T Consensus 248 ~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a-F~~c~~L~~l~l~~n~-i~~I~~~aF----- 317 (329)
T 3sb4_A 248 QKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGA-FMGCDNLRYVLATGDK-ITTLGDELF----- 317 (329)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT-TCCEECTTT-TTTCTTEEEEEECSSC-CCEECTTTT-----
T ss_pred CCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc-cceEEchhh-hhCCccCCEEEeCCCc-cCccchhhh-----
Confidence 899999999987 35555556678899999 999987 333211111 2368999999996554 333222222
Q ss_pred CCCCCccEEec
Q 015585 263 TISQSLTTLDL 273 (404)
Q Consensus 263 ~~~~~L~~L~l 273 (404)
..+++|+.+..
T Consensus 318 ~~~~~L~~ly~ 328 (329)
T 3sb4_A 318 GNGVPSKLIYK 328 (329)
T ss_dssp CTTCCCCEEEC
T ss_pred cCCcchhhhcc
Confidence 36778888764
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.54 E-value=4.5e-08 Score=93.69 Aligned_cols=73 Identities=22% Similarity=0.305 Sum_probs=33.5
Q ss_pred CCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCE
Q 015585 136 SLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTA 215 (404)
Q Consensus 136 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 215 (404)
+|+.|+++++. ++. +.. .+++|+.|+++++. ++. +.. .+++|++|+++++ .++. +..+. ++|+.
T Consensus 121 ~L~~L~Ls~N~-l~~--lp~---~l~~L~~L~Ls~N~-l~~--lp~--~l~~L~~L~Ls~N-~L~~--lp~l~--~~L~~ 184 (571)
T 3cvr_A 121 SLKHLDVDNNQ-LTM--LPE---LPALLEYINADNNQ-LTM--LPE--LPTSLEVLSVRNN-QLTF--LPELP--ESLEA 184 (571)
T ss_dssp TCCEEECCSSC-CSC--CCC---CCTTCCEEECCSSC-CSC--CCC--CCTTCCEEECCSS-CCSC--CCCCC--TTCCE
T ss_pred CCCEEECCCCc-CCC--CCC---cCccccEEeCCCCc-cCc--CCC--cCCCcCEEECCCC-CCCC--cchhh--CCCCE
Confidence 55666665553 211 111 34556666665543 221 100 3456666666653 3332 11122 56666
Q ss_pred EEccCCccC
Q 015585 216 LNLTGADIT 224 (404)
Q Consensus 216 L~l~~~~l~ 224 (404)
|++++|.++
T Consensus 185 L~Ls~N~L~ 193 (571)
T 3cvr_A 185 LDVSTNLLE 193 (571)
T ss_dssp EECCSSCCS
T ss_pred EECcCCCCC
Confidence 666666544
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.53 E-value=8.3e-09 Score=93.72 Aligned_cols=159 Identities=16% Similarity=0.083 Sum_probs=89.7
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHc-CCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCC
Q 015585 135 HSLKKFEVRSASFLSDLAFHDLTG-VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKL 213 (404)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 213 (404)
+.++.|+++++. ++.... .... .+++|+.|+++++. +.......+..+++|++|++++ +.+.......+..+++|
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~-~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRA-EWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS-NHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSC-CCEECT-TSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTC
T ss_pred CCCCEEECCCCC-CCccCh-hhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCC-CcCCcCCHHHhCCCcCC
Confidence 467888888874 332111 1122 56788888888764 4332223455778888888887 35554444456677888
Q ss_pred CEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCC
Q 015585 214 TALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIG 293 (404)
Q Consensus 214 ~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 293 (404)
+.|++++|.++...... ...+++|++|+++++. +.......+. ....+++|+.|+++++ .++......+ ..++.
T Consensus 115 ~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~--~~~~l~~L~~L~L~~N-~l~~l~~~~~-~~l~~ 188 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQNQ-ISRFPVELIK--DGNKLPKLMLLDLSSN-KLKKLPLTDL-QKLPA 188 (361)
T ss_dssp CEEECCSSCCCEECTTT-TTTCTTCCEEECCSSC-CCSCCGGGTC------CTTCCEEECCSS-CCCCCCHHHH-HHSCH
T ss_pred CEEECCCCcccEECHHH-hCCcccCCEEECCCCc-CCeeCHHHhc--CcccCCcCCEEECCCC-CCCccCHHHh-hhccH
Confidence 88888888765432111 2246778888887775 3331111110 0024667788887774 4443222222 12344
Q ss_pred --CceEeecCCC
Q 015585 294 --IIDLCVRSCF 303 (404)
Q Consensus 294 --L~~L~l~~~~ 303 (404)
++.|++.+|+
T Consensus 189 ~~l~~l~l~~N~ 200 (361)
T 2xot_A 189 WVKNGLYLHNNP 200 (361)
T ss_dssp HHHTTEECCSSC
T ss_pred hhcceEEecCCC
Confidence 3677777776
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.53 E-value=6.2e-08 Score=81.88 Aligned_cols=130 Identities=16% Similarity=0.037 Sum_probs=70.1
Q ss_pred CCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCC
Q 015585 42 PFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK 121 (404)
Q Consensus 42 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 121 (404)
++|++|++++|. ++......+..+++|+.|+++++. +..+.... ...+++|+.|+++++ .
T Consensus 40 ~~L~~L~Ls~n~---------i~~~~~~~~~~l~~L~~L~L~~N~------l~~i~~~~----~~~l~~L~~L~Ls~N-~ 99 (229)
T 3e6j_A 40 TNAQILYLHDNQ---------ITKLEPGVFDSLINLKELYLGSNQ------LGALPVGV----FDSLTQLTVLDLGTN-Q 99 (229)
T ss_dssp TTCSEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC------CCCCCTTT----TTTCTTCCEEECCSS-C
T ss_pred CCCCEEEcCCCc---------cCccCHHHhhCccCCcEEECCCCC------CCCcChhh----cccCCCcCEEECCCC-c
Confidence 567777777752 332222345566777777776643 22222221 134567777777764 3
Q ss_pred CCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCC
Q 015585 122 VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGC 196 (404)
Q Consensus 122 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 196 (404)
++... ...+..+++|+.|+++++. ++ .+......+++|+.|+++++. +.......+..+++|+.|++.++
T Consensus 100 l~~l~-~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 100 LTVLP-SAVFDRLVHLKELFMCCNK-LT--ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCC-TTTTTTCTTCCEEECCSSC-CC--SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCccC-hhHhCcchhhCeEeccCCc-cc--ccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 33211 1113456777777777764 22 111222466778888887764 33222223456778888888773
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=4.3e-09 Score=94.33 Aligned_cols=274 Identities=14% Similarity=0.078 Sum_probs=123.0
Q ss_pred CCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCH-HHHHHHHHhCCCCcEEEecCCCCCCHHH
Q 015585 74 CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSD-AGFAAILLSCHSLKKFEVRSASFLSDLA 152 (404)
Q Consensus 74 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 152 (404)
+++++.|.+++. +....+..+...+++|+.|+++++ .+.. .+.. ...+.++.+....+. +...
T Consensus 24 ~~~l~~L~l~g~----------i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~---~~~~~~~~~~~~~~~-I~~~- 87 (329)
T 3sb4_A 24 ANSITHLTLTGK----------LNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGKA---GTYPNGKFYIYMANF-VPAY- 87 (329)
T ss_dssp HHHCSEEEEEEE----------ECHHHHHHHHHSCTTCCEEEEEEE-EECCEEESS---SSSGGGCCEEECTTE-ECTT-
T ss_pred hCceeEEEEecc----------ccHHHHHHHHHhhccCeEEecCcc-eeEEecCcc---ccccccccccccccc-cCHH-
Confidence 456777777652 455555555444777888888764 2220 0000 001112222222221 1111
Q ss_pred HHHHHcC--------CCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCcc-
Q 015585 153 FHDLTGV--------PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI- 223 (404)
Q Consensus 153 l~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l- 223 (404)
.+.. +++|++|.+.. .+..-+-.++..|++|+.+++.. +.+..-...++..+.++..+.......
T Consensus 88 ---aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 88 ---AFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp ---TTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred ---HhcccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhh
Confidence 1234 67777777765 23222223345677777777766 233322233444455555554433110
Q ss_pred -CHHHHHHH-HhcCCCcC-EEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeec
Q 015585 224 -TDSGLSIL-AQGNLPIM-NLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVR 300 (404)
Q Consensus 224 -~~~~l~~l-~~~~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~ 300 (404)
....+... ...|..|+ .+.+.....+....+.. .....+++.+.+.+ .+.......+...|++|+.|++.
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~-----~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA-----GLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT-----TCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECT
T ss_pred hccccccccccccccccceeEEecCCCcHHHHHhhc-----ccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECC
Confidence 00000000 01234444 34443332222211111 12344556666654 34555555555556777777776
Q ss_pred CCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCccc-EEecCCccccCCChHHHHHHHhcCC
Q 015585 301 SCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLH-WLGIGQTRLASKGNPVITEIHNERP 379 (404)
Q Consensus 301 ~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~ 379 (404)
+|. ++.-+-.++. +|++|+.|++.+. ++..+...+. .|++|+ .+.+.+ .++.+... .+ ..|+
T Consensus 235 ~n~-i~~I~~~aF~-------~~~~L~~l~l~~n--i~~I~~~aF~--~~~~L~~~l~l~~-~l~~I~~~---aF-~~c~ 297 (329)
T 3sb4_A 235 KTN-ATTIPDFTFA-------QKKYLLKIKLPHN--LKTIGQRVFS--NCGRLAGTLELPA-SVTAIEFG---AF-MGCD 297 (329)
T ss_dssp TBC-CCEECTTTTT-------TCTTCCEEECCTT--CCEECTTTTT--TCTTCCEEEEECT-TCCEECTT---TT-TTCT
T ss_pred CCC-cceecHhhhh-------CCCCCCEEECCcc--cceehHHHhh--CChhccEEEEEcc-cceEEchh---hh-hCCc
Confidence 653 3322222222 4666777766652 4433333332 366666 666665 44333221 12 3556
Q ss_pred ccE-EEecccccccc
Q 015585 380 WLT-FCLDGCEIGCH 393 (404)
Q Consensus 380 ~l~-l~~~~~~~~~~ 393 (404)
+++ +.+.++.+...
T Consensus 298 ~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 298 NLRYVLATGDKITTL 312 (329)
T ss_dssp TEEEEEECSSCCCEE
T ss_pred cCCEEEeCCCccCcc
Confidence 666 66655554443
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.51 E-value=5.8e-08 Score=78.38 Aligned_cols=111 Identities=20% Similarity=0.187 Sum_probs=64.6
Q ss_pred cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585 12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG 91 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 91 (404)
.+..+++|++|+++++.+... +.+....++|++|++++|. ++. +..+..+++|+.|+++++.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~---------l~~--~~~l~~l~~L~~L~Ls~N~----- 75 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNE---------IRK--LDGFPLLRRLKTLLVNNNR----- 75 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSC---------CCE--ECCCCCCSSCCEEECCSSC-----
T ss_pred hcCCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCC---------CCc--ccccccCCCCCEEECCCCc-----
Confidence 356678888888888777632 3344434588888888863 332 2456778888888887753
Q ss_pred CccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 015585 92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS 146 (404)
Q Consensus 92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 146 (404)
+..+... +...+++|+.|+++++ .++.......+..+++|+.|+++++.
T Consensus 76 -l~~~~~~----~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 76 -ICRIGEG----LDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp -CCEECSC----HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred -ccccCcc----hhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC
Confidence 2222211 1235667777777764 33321110123455666666666653
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.51 E-value=3.2e-08 Score=83.64 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=58.5
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHH
Q 015585 264 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR 343 (404)
Q Consensus 264 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 343 (404)
.+++|++|+++++ .++.... .....+++|+.|++++|. ++.. -..+. .+++|+.|+++++ .++.....
T Consensus 86 ~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~l-p~~~~-------~l~~L~~L~L~~N-~l~~~~~~ 153 (229)
T 3e6j_A 86 SLTQLTVLDLGTN-QLTVLPS-AVFDRLVHLKELFMCCNK-LTEL-PRGIE-------RLTHLTHLALDQN-QLKSIPHG 153 (229)
T ss_dssp TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCSC-CTTGG-------GCTTCSEEECCSS-CCCCCCTT
T ss_pred cCCCcCEEECCCC-cCCccCh-hHhCcchhhCeEeccCCc-cccc-Ccccc-------cCCCCCEEECCCC-cCCccCHH
Confidence 3455555555553 3332110 011235677777777664 4311 01112 5788888888884 66543333
Q ss_pred hhhcCCCCcccEEecCCccccCCC--hHHHHHHHhcCCccEEEeccc
Q 015585 344 WVKRPSFRGLHWLGIGQTRLASKG--NPVITEIHNERPWLTFCLDGC 388 (404)
Q Consensus 344 ~l~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~~~~~l~l~~~~~ 388 (404)
.+. .+++|+.|++++|++.... ...+..+..........+.|.
T Consensus 154 ~~~--~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~ 198 (229)
T 3e6j_A 154 AFD--RLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGK 198 (229)
T ss_dssp TTT--TCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSS
T ss_pred HHh--CCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCc
Confidence 332 4788999999998886432 233444444444444444443
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.49 E-value=1.5e-08 Score=85.13 Aligned_cols=62 Identities=27% Similarity=0.356 Sum_probs=27.5
Q ss_pred CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585 184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 247 (404)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 247 (404)
.+++|++|++++ +.+.......+..+++|++|++++|.++.... ..+..+++|++|+++++.
T Consensus 54 ~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 54 PYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGNKITELPK-SLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp TCTTCCEEECCS-SCCCEECTTTTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCC-CcCCCcCHHHhhCCcCCCEEECCCCcCCccCH-hHccCCCCCCEEECCCCC
Confidence 445555555555 23433333344455555555555554432110 111234455555555443
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.48 E-value=3.5e-08 Score=79.70 Aligned_cols=13 Identities=8% Similarity=-0.176 Sum_probs=6.6
Q ss_pred hCCCCceEeecCC
Q 015585 290 AGIGIIDLCVRSC 302 (404)
Q Consensus 290 ~~~~L~~L~l~~~ 302 (404)
.+++|+.|+++++
T Consensus 138 ~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 138 KVPQVRVLDFQKV 150 (176)
T ss_dssp HCTTCSEETTEEC
T ss_pred HCCccceeCCCcC
Confidence 3455555555544
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.46 E-value=7.9e-09 Score=86.80 Aligned_cols=89 Identities=11% Similarity=0.042 Sum_probs=48.4
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHH
Q 015585 264 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR 343 (404)
Q Consensus 264 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 343 (404)
.+++|++|+++++ .++...... ...+++|++|++++|. ++......+. .+++|+.|+++++ .++.....
T Consensus 79 ~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~ 147 (220)
T 2v70_A 79 GASGVNEILLTSN-RLENVQHKM-FKGLESLKTLMLRSNR-ITCVGNDSFI-------GLSSVRLLSLYDN-QITTVAPG 147 (220)
T ss_dssp TCTTCCEEECCSS-CCCCCCGGG-GTTCSSCCEEECTTSC-CCCBCTTSST-------TCTTCSEEECTTS-CCCCBCTT
T ss_pred CCCCCCEEECCCC-ccCccCHhH-hcCCcCCCEEECCCCc-CCeECHhHcC-------CCccCCEEECCCC-cCCEECHH
Confidence 3455666666553 332211111 1235667777776664 3321111122 4677888888874 55543333
Q ss_pred hhhcCCCCcccEEecCCccccC
Q 015585 344 WVKRPSFRGLHWLGIGQTRLAS 365 (404)
Q Consensus 344 ~l~~~~~~~L~~L~l~~~~l~~ 365 (404)
.+. .+++|+.|++++|++..
T Consensus 148 ~~~--~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 148 AFD--TLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTT--TCTTCCEEECCSCCEEC
T ss_pred Hhc--CCCCCCEEEecCcCCcC
Confidence 333 47788888888888764
No 132
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.45 E-value=3e-08 Score=82.48 Aligned_cols=38 Identities=8% Similarity=-0.125 Sum_probs=17.6
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCC
Q 015585 264 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 303 (404)
Q Consensus 264 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 303 (404)
.+++|++|+++++ .++.... .....+++|+.|++++|+
T Consensus 122 ~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 122 KLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred cCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCCC
Confidence 3455555655553 3322111 111234666666666664
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.43 E-value=3.1e-08 Score=83.19 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=4.9
Q ss_pred CCcEEEcCC
Q 015585 110 GLESVRLGG 118 (404)
Q Consensus 110 ~L~~L~l~~ 118 (404)
.++.|++++
T Consensus 33 ~~~~L~L~~ 41 (220)
T 2v70_A 33 YTAELRLNN 41 (220)
T ss_dssp TCSEEECCS
T ss_pred CCCEEEcCC
Confidence 445555555
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.43 E-value=3.3e-07 Score=87.75 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=109.5
Q ss_pred CCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccC
Q 015585 18 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVN 97 (404)
Q Consensus 18 ~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 97 (404)
+|+.|+++++.++. .+..+ +++|++|++++|. ++. ++ ..+++|+.|+++++. +..+.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~---------l~~--ip--~~l~~L~~L~Ls~N~------l~~ip 116 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNA---------LIS--LP--ELPASLEYLDACDNR------LSTLP 116 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSC---------CSC--CC--CCCTTCCEEECCSSC------CSCCC
T ss_pred CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCC---------Ccc--cc--cccCCCCEEEccCCC------CCCcc
Confidence 88899998877764 11112 4789999999873 221 12 446888999998753 22222
Q ss_pred hhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHH
Q 015585 98 DMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSE 177 (404)
Q Consensus 98 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 177 (404)
. + ..+|+.|+++++ .++. +.. .+++|+.|+++++. ++. +. ..+++|+.|+++++. ++.
T Consensus 117 ~-----l---~~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~-l~~--lp---~~l~~L~~L~Ls~N~-L~~- 174 (571)
T 3cvr_A 117 E-----L---PASLKHLDVDNN-QLTM--LPE---LPALLEYINADNNQ-LTM--LP---ELPTSLEVLSVRNNQ-LTF- 174 (571)
T ss_dssp C-----C---CTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSC-CSC-
T ss_pred h-----h---hcCCCEEECCCC-cCCC--CCC---cCccccEEeCCCCc-cCc--CC---CcCCCcCEEECCCCC-CCC-
Confidence 1 1 128888888885 3332 211 56888888888885 322 11 146788888888875 322
Q ss_pred HHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCC-------CEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCc
Q 015585 178 TVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKL-------TALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVT 250 (404)
Q Consensus 178 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~ 250 (404)
+..+. ++|+.|+++++ .++. ++.+.. +| +.|++++|.++.- ...+. .+++|+.|++++|. ++
T Consensus 175 -lp~l~--~~L~~L~Ls~N-~L~~--lp~~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~-~l~~L~~L~L~~N~-l~ 243 (571)
T 3cvr_A 175 -LPELP--ESLEALDVSTN-LLES--LPAVPV--RNHHSEETEIFFRCRENRITHI-PENIL-SLDPTCTIILEDNP-LS 243 (571)
T ss_dssp -CCCCC--TTCCEEECCSS-CCSS--CCCCC----------CCEEEECCSSCCCCC-CGGGG-GSCTTEEEECCSSS-CC
T ss_pred -cchhh--CCCCEEECcCC-CCCc--hhhHHH--hhhcccccceEEecCCCcceec-CHHHh-cCCCCCEEEeeCCc-CC
Confidence 11122 78888888884 5542 111221 55 8888888877631 11122 37888888888887 65
Q ss_pred HHHHH
Q 015585 251 DKGIS 255 (404)
Q Consensus 251 ~~~~~ 255 (404)
.....
T Consensus 244 ~~~p~ 248 (571)
T 3cvr_A 244 SRIRE 248 (571)
T ss_dssp HHHHH
T ss_pred CcCHH
Confidence 54433
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.39 E-value=6.5e-09 Score=99.86 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=66.4
Q ss_pred CCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCC
Q 015585 187 NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQ 266 (404)
Q Consensus 187 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~ 266 (404)
.|+.|+++++ .++. ++.+..+++|+.|++++|.++. +..-...+++|+.|+++++. ++.. ..+ ..++
T Consensus 442 ~L~~L~Ls~n-~l~~--lp~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~-l~~l--p~l-----~~l~ 508 (567)
T 1dce_A 442 DVRVLHLAHK-DLTV--LCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA-LENV--DGV-----ANLP 508 (567)
T ss_dssp TCSEEECTTS-CCSS--CCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC-CCCC--GGG-----TTCS
T ss_pred CceEEEecCC-CCCC--CcCccccccCcEeecCcccccc--cchhhhcCCCCCEEECCCCC-CCCC--ccc-----CCCC
Confidence 4667777663 4443 2235566777777777776552 11122246677777777665 4331 122 3567
Q ss_pred CccEEecCCCCCCCHHH-HHHHHHhCCCCceEeecCCCCCCHH--HHHHHHhhCCCcccCCCCcEEec
Q 015585 267 SLTTLDLGYMPGISDDG-ILTIAAAGIGIIDLCVRSCFYVTDA--SVEALARKQPDQEKSKQLRRLDL 331 (404)
Q Consensus 267 ~L~~L~l~~~~~l~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~~~~~~~L~~L~l 331 (404)
+|+.|+++++ .++... ...+ ..+++|+.|++++|+ ++.. ....+.. .+|+|+.|++
T Consensus 509 ~L~~L~Ls~N-~l~~~~~p~~l-~~l~~L~~L~L~~N~-l~~~~~~~~~l~~------~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNN-RLQQSAAIQPL-VSCPRLVLLNLQGNS-LCQEEGIQERLAE------MLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSS-CCCSSSTTGGG-GGCTTCCEEECTTSG-GGGSSSCTTHHHH------HCTTCSEEEC
T ss_pred CCcEEECCCC-CCCCCCCcHHH-hcCCCCCEEEecCCc-CCCCccHHHHHHH------HCcccCccCC
Confidence 7777777774 444321 1122 346777777777774 3321 1222222 3677777753
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.37 E-value=5.3e-09 Score=94.60 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=43.9
Q ss_pred ccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccc
Q 015585 11 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCR 86 (404)
Q Consensus 11 ~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 86 (404)
..|..+++|++|+|++|.+...........+++++++.+.++ ..++......+..+++|++|+++++.
T Consensus 48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~--------N~l~~l~~~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA--------NNLLYINPEAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE--------TTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC--------CcccccCchhhhhccccccccccccc
Confidence 357889999999999887653322222234677776554432 13333333456788999999998864
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.34 E-value=2.3e-08 Score=82.51 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=17.3
Q ss_pred CCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEeccc
Q 015585 41 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC 85 (404)
Q Consensus 41 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 85 (404)
+++|++|++++|. ++. ++.+..+++|+.|+++++
T Consensus 47 l~~L~~L~ls~n~---------l~~--l~~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 47 LKACKHLALSTNN---------IEK--ISSLSGMENLRILSLGRN 80 (198)
T ss_dssp TTTCSEEECSEEE---------ESC--CCCHHHHTTCCEEEEEEE
T ss_pred CCCCCEEECCCCC---------Ccc--ccccccCCCCCEEECCCC
Confidence 5666666666542 222 123445556666666554
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.24 E-value=1.8e-07 Score=77.10 Aligned_cols=57 Identities=21% Similarity=0.222 Sum_probs=29.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHH-HHHHHhhCCCcccCCCCcEEeccCC
Q 015585 266 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDAS-VEALARKQPDQEKSKQLRRLDLCNC 334 (404)
Q Consensus 266 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~~~~~~~L~~L~l~~~ 334 (404)
++|++|+++++ .++... .+ ..+++|+.|++++|. +++.. +..+. .+++|+.|++++|
T Consensus 93 ~~L~~L~L~~N-~l~~l~--~~-~~l~~L~~L~l~~N~-i~~~~~~~~l~-------~l~~L~~L~l~~N 150 (198)
T 1ds9_A 93 DTLEELWISYN-QIASLS--GI-EKLVNLRVLYMSNNK-ITNWGEIDKLA-------ALDKLEDLLLAGN 150 (198)
T ss_dssp HHCSEEEEEEE-ECCCHH--HH-HHHHHSSEEEESEEE-CCCHHHHHHHT-------TTTTCSEEEECSC
T ss_pred CcCCEEECcCC-cCCcCC--cc-ccCCCCCEEECCCCc-CCchhHHHHHh-------cCCCCCEEEecCC
Confidence 45666666654 343321 11 234566666666664 44322 23333 3666777777664
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.20 E-value=1.6e-07 Score=77.06 Aligned_cols=109 Identities=22% Similarity=0.173 Sum_probs=56.5
Q ss_pred CCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHh
Q 015585 236 LPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR 315 (404)
Q Consensus 236 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 315 (404)
+++++|+++++. ++... ..+ ..+++|++|+++++ .++......+ ..+++|+.|++++|. ++......+.
T Consensus 31 ~~l~~L~L~~n~-i~~ip-~~~-----~~l~~L~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~N~-l~~i~~~~f~- 99 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLVP-KEL-----SNYKHLTLIDLSNN-RISTLSNQSF-SNMTQLLTLILSYNR-LRCIPPRTFD- 99 (193)
T ss_dssp TTCCEEECCSSC-CCSCC-GGG-----GGCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTTTTT-
T ss_pred CCCCEEECCCCc-CchhH-HHh-----hcccCCCEEECCCC-cCCEeCHhHc-cCCCCCCEEECCCCc-cCEeCHHHhC-
Confidence 567777777765 33211 112 25667777777764 4433211111 245667777777664 4322111122
Q ss_pred hCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585 316 KQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 364 (404)
Q Consensus 316 ~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~ 364 (404)
.+++|+.|++++ +.++......+. .+++|+.|++++|++.
T Consensus 100 ------~l~~L~~L~L~~-N~l~~~~~~~~~--~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 100 ------GLKSLRLLSLHG-NDISVVPEGAFN--DLSALSHLAIGANPLY 139 (193)
T ss_dssp ------TCTTCCEEECCS-SCCCBCCTTTTT--TCTTCCEEECCSSCEE
T ss_pred ------CCCCCCEEECCC-CCCCeeChhhhh--cCccccEEEeCCCCee
Confidence 366677777766 345432222222 3666777777766664
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.01 E-value=1.8e-06 Score=70.65 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=43.8
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCC
Q 015585 109 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNL 188 (404)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 188 (404)
++|++|+++++ .++. +...+..+++|+.|+++++. ++... ...+..+++|+.|+++++. +.......+..+++|
T Consensus 31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~-i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNR-ISTLS-NQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTC
T ss_pred CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCc-CCEeC-HhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCC
Confidence 46677777663 3321 11223445566666666553 11100 0111234455555555443 221111123344455
Q ss_pred CEEeccCCCCCChHHHHhhhCCCCCCEEEccCC
Q 015585 189 EVLDLGGCKSIADTCLRSISCLRKLTALNLTGA 221 (404)
Q Consensus 189 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 221 (404)
++|++++ +.+.......+..+++|+.|++++|
T Consensus 105 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 105 RLLSLHG-NDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CEEECCS-SCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCC-CCCCeeChhhhhcCccccEEEeCCC
Confidence 5555544 2333222222334444444444444
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.99 E-value=8.1e-07 Score=72.70 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=15.7
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCC
Q 015585 110 GLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSA 145 (404)
Q Consensus 110 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 145 (404)
+|+.|+++++ .++.......+..+++|+.|+++++
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N 64 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN 64 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC
Confidence 5666666663 2221111111334455555555555
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.98 E-value=1.6e-06 Score=70.83 Aligned_cols=127 Identities=18% Similarity=0.206 Sum_probs=64.4
Q ss_pred cEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhh-hhcCCCCCceEEecccccCCCCCccccCh
Q 015585 20 RSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQ-SLGSCHHLTGLSLTRCRHNHQGTFKRVND 98 (404)
Q Consensus 20 ~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 98 (404)
+.++++++.+... +.. ..++|++|++++|. ++..... .++.+++|++|+++++. +..+..
T Consensus 11 ~~l~~s~~~l~~i-p~~---~~~~l~~L~l~~n~---------i~~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~ 71 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRD---IPLHTTELLLNDNE---------LGRISSDGLFGRLPHLVKLELKRNQ------LTGIEP 71 (192)
T ss_dssp TEEECTTSCCSSC-CSC---CCTTCSEEECCSCC---------CCSBCCSCSGGGCTTCCEEECCSSC------CCCBCT
T ss_pred CEEEcCCCCcCcC-ccC---CCCCCCEEECCCCc---------CCccCCccccccCCCCCEEECCCCC------CCCcCH
Confidence 5666666555421 111 12367777777753 2221111 24566777777776642 222222
Q ss_pred hhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCC
Q 015585 99 MGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL 173 (404)
Q Consensus 99 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 173 (404)
..+ ..+++|+.|+++++ .++.... ..+..+++|+.|+++++. ++... ......+++|+.|+++++..
T Consensus 72 ~~~----~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 72 NAF----EGASHIQELQLGEN-KIKEISN-KMFLGLHQLKTLNLYDNQ-ISCVM-PGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TTT----TTCTTCCEEECCSC-CCCEECS-SSSTTCTTCCEEECCSSC-CCEEC-TTSSTTCTTCCEEECTTCCB
T ss_pred hHc----CCcccCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCCc-CCeeC-HHHhhcCCCCCEEEeCCCCc
Confidence 222 34567777777764 3332111 113345777777777774 22110 11223567788888877653
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.95 E-value=4.1e-06 Score=67.41 Aligned_cols=128 Identities=16% Similarity=0.095 Sum_probs=64.6
Q ss_pred CcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccCh
Q 015585 19 LRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVND 98 (404)
Q Consensus 19 L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 98 (404)
.+.++++++.+.... . ...++|++|++++|. ++......+..+++|++|+++++. +..+..
T Consensus 9 ~~~l~~~~~~l~~~p-~---~~~~~l~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~ 69 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-T---GIPSSATRLELESNK---------LQSLPHGVFDKLTQLTKLSLSQNQ------IQSLPD 69 (177)
T ss_dssp TTEEECCSSCCSSCC-T---TCCTTCSEEECCSSC---------CCCCCTTTTTTCTTCSEEECCSSC------CCCCCT
T ss_pred CCEEEecCCCCccCC-C---CCCCCCcEEEeCCCc---------ccEeCHHHhcCcccccEEECCCCc------ceEeCh
Confidence 355666654444211 1 113567777777752 222222234566777777776642 222222
Q ss_pred hhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCC
Q 015585 99 MGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL 173 (404)
Q Consensus 99 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 173 (404)
.. ...+++|+.|+++++ .++... ...+..+++|+.|+++++. ++... ......+++|+.|+++++..
T Consensus 70 ~~----~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 70 GV----FDKLTKLTILYLHEN-KLQSLP-NGVFDKLTQLKELALDTNQ-LKSVP-DGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TT----TTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSSCB
T ss_pred hH----ccCCCccCEEECCCC-CccccC-HHHhhCCcccCEEECcCCc-ceEeC-HHHhcCCcccCEEEecCCCe
Confidence 11 134567777777764 333111 1123455777777777764 22110 11223567788888877653
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.90 E-value=3.6e-06 Score=67.77 Aligned_cols=39 Identities=26% Similarity=0.180 Sum_probs=16.2
Q ss_pred CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCcc
Q 015585 184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI 223 (404)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 223 (404)
.+++|++|+++++ .++......+..+++|+.|++++|.+
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 50 KLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCc
Confidence 3444555555442 33322222233444455555544433
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.85 E-value=4.3e-06 Score=76.63 Aligned_cols=196 Identities=13% Similarity=0.098 Sum_probs=110.6
Q ss_pred cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585 12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG 91 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 91 (404)
+|..+ +|+.+.+.. .+.......+ ..|++|+++++.++. ++......+. +.+|+.+.+...
T Consensus 153 aF~~~-~L~~i~lp~-~l~~I~~~aF-~~c~~L~~l~l~~n~---------l~~I~~~aF~-~~~L~~l~lp~~------ 213 (401)
T 4fdw_A 153 AFFNS-TVQEIVFPS-TLEQLKEDIF-YYCYNLKKADLSKTK---------ITKLPASTFV-YAGIEEVLLPVT------ 213 (401)
T ss_dssp TTTTC-CCCEEECCT-TCCEECSSTT-TTCTTCCEEECTTSC---------CSEECTTTTT-TCCCSEEECCTT------
T ss_pred hcCCC-CceEEEeCC-CccEehHHHh-hCcccCCeeecCCCc---------ceEechhhEe-ecccCEEEeCCc------
Confidence 34443 688888874 2221111112 348889999998752 2222222223 567888888542
Q ss_pred CccccChhhHHHHHhcCCCCcEEEcCCC-CCCCHHHHHHHHHhCCCCcEEEecCCC-CCCHHHHHHHHcCCCCccEEEcc
Q 015585 92 TFKRVNDMGMFLLSEGCKGLESVRLGGF-SKVSDAGFAAILLSCHSLKKFEVRSAS-FLSDLAFHDLTGVPCALVEVRLL 169 (404)
Q Consensus 92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~ 169 (404)
...+.+.++ ..|++|+.+.+... ..+....+ .. .+|+.+.+.... .+... .+..|++|+.+.+.
T Consensus 214 -l~~I~~~aF----~~~~~L~~l~l~~~l~~I~~~aF----~~-~~L~~i~lp~~i~~I~~~----aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 214 -LKEIGSQAF----LKTSQLKTIEIPENVSTIGQEAF----RE-SGITTVKLPNGVTNIASR----AFYYCPELAEVTTY 279 (401)
T ss_dssp -CCEECTTTT----TTCTTCCCEECCTTCCEECTTTT----TT-CCCSEEEEETTCCEECTT----TTTTCTTCCEEEEE
T ss_pred -hheehhhHh----hCCCCCCEEecCCCccCcccccc----cc-CCccEEEeCCCccEEChh----HhhCCCCCCEEEeC
Confidence 233444433 56778888888652 12222211 22 578888885541 12221 23477888888886
Q ss_pred CCCCC----CHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC--ccCHHHHHHHHhcCCCcCEEee
Q 015585 170 WCRLI----TSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA--DITDSGLSILAQGNLPIMNLCL 243 (404)
Q Consensus 170 ~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~l~~~~l~~l~~~~~~L~~L~l 243 (404)
++... ..-.-.++..|++|+.+.+.. .+..-.-.++..|++|+.+.+..+ .+.... +..| +|+.+.+
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~a----F~~~-~L~~l~l 352 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPANVTQINFSA----FNNT-GIKEVKV 352 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTTCCEECTTS----SSSS-CCCEEEE
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECccccEEcHHh----CCCC-CCCEEEE
Confidence 64311 001112345788899998874 355444556678889999988664 222221 1256 8999998
Q ss_pred cCCC
Q 015585 244 RGCK 247 (404)
Q Consensus 244 ~~~~ 247 (404)
.++.
T Consensus 353 ~~n~ 356 (401)
T 4fdw_A 353 EGTT 356 (401)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 8764
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.77 E-value=4.7e-07 Score=83.19 Aligned_cols=291 Identities=12% Similarity=0.101 Sum_probs=145.6
Q ss_pred ccccCCCCCcEEeccC--CCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEeccc---
Q 015585 11 SSYYSSFNLRSLSLVL--DVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC--- 85 (404)
Q Consensus 11 ~~~~~~~~L~~L~L~~--~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--- 85 (404)
.+|..|.+|+.+.+.. ..+.+.. + ..|++|+++++..+ ++..+-.++..+.+|+.+.+...
T Consensus 65 ~AF~~c~~L~~i~lp~~i~~I~~~a---F-~~c~~L~~i~lp~~----------l~~I~~~aF~~c~~L~~i~~p~~l~~ 130 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPSTVREIGEFA---F-ENCSKLEIINIPDS----------VKMIGRCTFSGCYALKSILLPLMLKS 130 (394)
T ss_dssp TTTTTCTTEEEEECCTTCCEECTTT---T-TTCTTCCEECCCTT----------CCEECTTTTTTCTTCCCCCCCTTCCE
T ss_pred HHhhCCCCceEEEeCCCccCcchhH---h-hCCCCCcEEEeCCC----------ceEccchhhcccccchhhcccCceee
Confidence 4688899999999974 2333322 2 34899999999753 22222223334444444333211
Q ss_pred ---------ccC---CCCCccccChhhHHHHHhcCCCCcEEEcCCCC-CCCHHHHHHHHHhCCCCcEEEecCCC-CCCHH
Q 015585 86 ---------RHN---HQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS-KVSDAGFAAILLSCHSLKKFEVRSAS-FLSDL 151 (404)
Q Consensus 86 ---------~~~---~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~ 151 (404)
... .......+.+.+ ...|++|+.+.+.... .+.. .....|.+|+.+.+.... .+...
T Consensus 131 i~~~aF~~~~~~~~~~~~~~~~i~~~a----F~~c~~L~~i~l~~~~~~I~~----~~F~~c~~L~~i~l~~~~~~I~~~ 202 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGVTVIGDEA----FATCESLEYVSLPDSMETLHN----GLFSGCGKLKSIKLPRNLKIIRDY 202 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECT----TTTTTCTTCCBCCCCTTCCEECTT
T ss_pred ecceeeecccccccccCccccccchhh----hcccCCCcEEecCCccceecc----ccccCCCCceEEEcCCCceEeCch
Confidence 000 001112222222 2568889999986521 1221 124567888888886542 11111
Q ss_pred HHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC--ccCHHHHH
Q 015585 152 AFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA--DITDSGLS 229 (404)
Q Consensus 152 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~l~~~~l~ 229 (404)
.+..+..|+.+.+......-. .....+..|+.+.+.. .+..-.-.++..+..|+.+.+..+ .+....
T Consensus 203 ----~F~~~~~L~~i~~~~~~~~i~---~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~-- 271 (394)
T 4fs7_A 203 ----CFAECILLENMEFPNSLYYLG---DFALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKLRIGGSL-- 271 (394)
T ss_dssp ----TTTTCTTCCBCCCCTTCCEEC---TTTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTCEECSCT--
T ss_pred ----hhccccccceeecCCCceEee---hhhcccCCCceEEECC--CceecccccccccccceeEEcCCCcceeeccc--
Confidence 233566777776654321100 0112456777777754 222222334456677777777654 122111
Q ss_pred HHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHH
Q 015585 230 ILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDAS 309 (404)
Q Consensus 230 ~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 309 (404)
...+..++.+...... +.+.. . ..+.+|+.+.+.. .+...+-. ....|++|+.+.+... ++.-+
T Consensus 272 --F~~~~~l~~~~~~~~~-i~~~~----F----~~~~~L~~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~~--v~~I~ 335 (394)
T 4fs7_A 272 --FYNCSGLKKVIYGSVI-VPEKT----F----YGCSSLTEVKLLD--SVKFIGEE-AFESCTSLVSIDLPYL--VEEIG 335 (394)
T ss_dssp --TTTCTTCCEEEECSSE-ECTTT----T----TTCTTCCEEEECT--TCCEECTT-TTTTCTTCCEECCCTT--CCEEC
T ss_pred --cccccccceeccCcee-ecccc----c----ccccccccccccc--ccceechh-hhcCCCCCCEEEeCCc--ccEEh
Confidence 1245666666554332 22211 1 3456777777644 22211111 1234677777777542 22211
Q ss_pred HHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCc
Q 015585 310 VEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQT 361 (404)
Q Consensus 310 ~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 361 (404)
-.++. +|.+|+.+.+.. .++..+...+. .|++|+.+.+..+
T Consensus 336 ~~aF~-------~c~~L~~i~lp~--~l~~I~~~aF~--~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 336 KRSFR-------GCTSLSNINFPL--SLRKIGANAFQ--GCINLKKVELPKR 376 (394)
T ss_dssp TTTTT-------TCTTCCEECCCT--TCCEECTTTBT--TCTTCCEEEEEGG
T ss_pred HHhcc-------CCCCCCEEEECc--cccEehHHHhh--CCCCCCEEEECCC
Confidence 22233 477788887754 24443333343 4778888877644
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.76 E-value=1.1e-06 Score=80.68 Aligned_cols=213 Identities=13% Similarity=0.073 Sum_probs=107.9
Q ss_pred HHhCCCCcEEEecCCCC-CCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhC
Q 015585 131 LLSCHSLKKFEVRSASF-LSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISC 209 (404)
Q Consensus 131 ~~~~~~L~~L~l~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 209 (404)
...|.+|+.+.+..... +... .+..+++|+.+.+... +....-.++..|..|+.+.+... ..... .....
T Consensus 158 F~~c~~L~~i~l~~~~~~I~~~----~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~-~~~~~ 228 (394)
T 4fs7_A 158 FATCESLEYVSLPDSMETLHNG----LFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLG-DFALS 228 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTT----TTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEEC-TTTTT
T ss_pred hcccCCCcEEecCCccceeccc----cccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEee-hhhcc
Confidence 45678888888865421 1111 2346677887777542 21111123446777777766542 11111 11123
Q ss_pred CCCCCEEEccCC--ccCHHHHHHHHhcCCCcCEEeecCCC-CCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHH
Q 015585 210 LRKLTALNLTGA--DITDSGLSILAQGNLPIMNLCLRGCK-RVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILT 286 (404)
Q Consensus 210 ~~~L~~L~l~~~--~l~~~~l~~l~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 286 (404)
..+|+.+.+... .+.... ...+..++.+.+.... .+.... + ..++.++.+..... .+.+.
T Consensus 229 ~~~l~~i~ip~~~~~i~~~~----f~~~~~l~~~~~~~~~~~i~~~~---F-----~~~~~l~~~~~~~~-~i~~~---- 291 (394)
T 4fs7_A 229 KTGVKNIIIPDSFTELGKSV----FYGCTDLESISIQNNKLRIGGSL---F-----YNCSGLKKVIYGSV-IVPEK---- 291 (394)
T ss_dssp TCCCCEEEECTTCCEECSST----TTTCSSCCEEEECCTTCEECSCT---T-----TTCTTCCEEEECSS-EECTT----
T ss_pred cCCCceEEECCCceeccccc----ccccccceeEEcCCCcceeeccc---c-----ccccccceeccCce-eeccc----
Confidence 467777777553 222111 1246777877775432 111111 1 24556666665442 22211
Q ss_pred HHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCC
Q 015585 287 IAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 366 (404)
Q Consensus 287 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~ 366 (404)
....|.+|+.+.+..+ ++.-+-.++. +|.+|+.+++.. .++..+-..+. .|++|+.+.+..+ ++.+
T Consensus 292 ~F~~~~~L~~i~l~~~--i~~I~~~aF~-------~c~~L~~i~lp~--~v~~I~~~aF~--~c~~L~~i~lp~~-l~~I 357 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS--VKFIGEEAFE-------SCTSLVSIDLPY--LVEEIGKRSFR--GCTSLSNINFPLS-LRKI 357 (394)
T ss_dssp TTTTCTTCCEEEECTT--CCEECTTTTT-------TCTTCCEECCCT--TCCEECTTTTT--TCTTCCEECCCTT-CCEE
T ss_pred cccccccccccccccc--cceechhhhc-------CCCCCCEEEeCC--cccEEhHHhcc--CCCCCCEEEECcc-ccEe
Confidence 1234678888887643 2211112222 478888888854 34443333343 4788888888655 4433
Q ss_pred ChHHHHHHHhcCCccE-EEecc
Q 015585 367 GNPVITEIHNERPWLT-FCLDG 387 (404)
Q Consensus 367 ~~~~~~~~~~~~~~l~-l~~~~ 387 (404)
+..+ + ..|++|+ +.+..
T Consensus 358 ~~~a---F-~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 358 GANA---F-QGCINLKKVELPK 375 (394)
T ss_dssp CTTT---B-TTCTTCCEEEEEG
T ss_pred hHHH---h-hCCCCCCEEEECC
Confidence 3322 2 4666676 66543
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.66 E-value=1e-05 Score=80.14 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=41.6
Q ss_pred hCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCC
Q 015585 133 SCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRK 212 (404)
Q Consensus 133 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 212 (404)
.+++|+.|+|+++. ++ .+......+++|+.|+|+++. +. .....+..+++|++|+|+++ .++. ....+..+++
T Consensus 245 ~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~L~~N-~l~~-lp~~~~~l~~ 317 (727)
T 4b8c_D 245 KYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNR-LT-SLPAELGSCFQLKYFYFFDN-MVTT-LPWEFGNLCN 317 (727)
T ss_dssp GCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSC-CS-SCCSSGGGGTTCSEEECCSS-CCCC-CCSSTTSCTT
T ss_pred CCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCc-CC-ccChhhcCCCCCCEEECCCC-CCCc-cChhhhcCCC
Confidence 34555555555553 22 111222345566666666544 22 11122345566666666663 3431 1223555666
Q ss_pred CCEEEccCCccC
Q 015585 213 LTALNLTGADIT 224 (404)
Q Consensus 213 L~~L~l~~~~l~ 224 (404)
|+.|+|++|.++
T Consensus 318 L~~L~L~~N~l~ 329 (727)
T 4b8c_D 318 LQFLGVEGNPLE 329 (727)
T ss_dssp CCCEECTTSCCC
T ss_pred ccEEeCCCCccC
Confidence 666666666555
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.59 E-value=1.2e-05 Score=73.78 Aligned_cols=217 Identities=16% Similarity=0.197 Sum_probs=132.7
Q ss_pred cccCCCCCcEEeccCC--CCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCC
Q 015585 12 SYYSSFNLRSLSLVLD--VITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNH 89 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~~--~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 89 (404)
+|..+ +|+.+.+..+ .+.+.. +.. .+|+++.+... +...+-..+..|++|+.+++..+.
T Consensus 131 aF~~~-~L~~i~l~~~i~~I~~~a---F~~--~~L~~i~lp~~----------l~~I~~~aF~~c~~L~~l~l~~n~--- 191 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEGLKSIGDMA---FFN--STVQEIVFPST----------LEQLKEDIFYYCYNLKKADLSKTK--- 191 (401)
T ss_dssp TTTTC-CCSEEECCTTCCEECTTT---TTT--CCCCEEECCTT----------CCEECSSTTTTCTTCCEEECTTSC---
T ss_pred hcccC-CccEEEeCCCccEECHHh---cCC--CCceEEEeCCC----------ccEehHHHhhCcccCCeeecCCCc---
Confidence 45555 7999999842 233222 222 36999998863 333344456789999999997632
Q ss_pred CCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCC-CCCHHHHHHHHcCCCCccEEEc
Q 015585 90 QGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS-FLSDLAFHDLTGVPCALVEVRL 168 (404)
Q Consensus 90 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l 168 (404)
+..+....+. +.+|+.+.+... +..-+-. .+..|++|+.+.+.... .+....+ ...+|+.+.+
T Consensus 192 ---l~~I~~~aF~-----~~~L~~l~lp~~--l~~I~~~-aF~~~~~L~~l~l~~~l~~I~~~aF-----~~~~L~~i~l 255 (401)
T 4fdw_A 192 ---ITKLPASTFV-----YAGIEEVLLPVT--LKEIGSQ-AFLKTSQLKTIEIPENVSTIGQEAF-----RESGITTVKL 255 (401)
T ss_dssp ---CSEECTTTTT-----TCCCSEEECCTT--CCEECTT-TTTTCTTCCCEECCTTCCEECTTTT-----TTCCCSEEEE
T ss_pred ---ceEechhhEe-----ecccCEEEeCCc--hheehhh-HhhCCCCCCEEecCCCccCcccccc-----ccCCccEEEe
Confidence 3344444432 578999999752 2211111 25678999999998651 1222222 2268999999
Q ss_pred cCCCCCCHHHHHHhhCCCCCCEEeccCCCCCC-----hHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEee
Q 015585 169 LWCRLITSETVKKLASSRNLEVLDLGGCKSIA-----DTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCL 243 (404)
Q Consensus 169 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l 243 (404)
... +..-+-.++..|++|+.+.+.+. ... .-.-.++..|++|+.+.+..+ ++.-+-.+ +..|.+|+.+.+
T Consensus 256 p~~--i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~a-F~~c~~L~~l~l 330 (401)
T 4fdw_A 256 PNG--VTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGL-LGGNRKVTQLTI 330 (401)
T ss_dssp ETT--CCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTT-TTTCCSCCEEEE
T ss_pred CCC--ccEEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhh-hcCCCCccEEEE
Confidence 542 32222334568999999999773 222 123345678999999999853 32211111 236899999999
Q ss_pred cCCCCCcHHHHHHHHhhcCCCCCCccEEecCCC
Q 015585 244 RGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 276 (404)
Q Consensus 244 ~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~ 276 (404)
... +...+-..+ ..+ +|+.+.+.+.
T Consensus 331 p~~--l~~I~~~aF-----~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 331 PAN--VTQINFSAF-----NNT-GIKEVKVEGT 355 (401)
T ss_dssp CTT--CCEECTTSS-----SSS-CCCEEEECCS
T ss_pred Ccc--ccEEcHHhC-----CCC-CCCEEEEcCC
Confidence 654 332222222 356 8999999874
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.57 E-value=1.4e-05 Score=79.21 Aligned_cols=111 Identities=14% Similarity=0.055 Sum_probs=76.0
Q ss_pred HHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhC
Q 015585 130 ILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISC 209 (404)
Q Consensus 130 l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 209 (404)
.+..+++|+.|+++++.... +..-...++.|+.|+|+++. +. .....+..+++|++|+|+++ .++ .....+..
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~---l~~~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~ 291 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFN---ISANIFKYDFLTRLYLNGNS-LT-ELPAEIKNLSNLRVLDLSHN-RLT-SLPAELGS 291 (727)
T ss_dssp ---CCCCCCEEECTTSCCSC---CCGGGGGCCSCSCCBCTTSC-CS-CCCGGGGGGTTCCEEECTTS-CCS-SCCSSGGG
T ss_pred hhccCCCCcEEECCCCCCCC---CChhhcCCCCCCEEEeeCCc-Cc-ccChhhhCCCCCCEEeCcCC-cCC-ccChhhcC
Confidence 35567889999999885321 11112267899999999875 43 22234668899999999984 566 33455678
Q ss_pred CCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCc
Q 015585 210 LRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVT 250 (404)
Q Consensus 210 ~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~ 250 (404)
+++|++|+|++|.++. +..-...+++|+.|+|++|. +.
T Consensus 292 l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~-l~ 329 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNP-LE 329 (727)
T ss_dssp GTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSC-CC
T ss_pred CCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCc-cC
Confidence 8999999999997752 11113357899999999887 44
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.55 E-value=6.8e-05 Score=59.73 Aligned_cols=103 Identities=13% Similarity=0.035 Sum_probs=62.7
Q ss_pred CcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccCh
Q 015585 19 LRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVND 98 (404)
Q Consensus 19 L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 98 (404)
.+.++++++.+... +..+ .++|++|++++|. ++......+..+++|++|+++++. +..+..
T Consensus 11 ~~~l~~s~n~l~~i-p~~~---~~~l~~L~L~~N~---------i~~~~~~~~~~l~~L~~L~Ls~N~------l~~l~~ 71 (170)
T 3g39_A 11 GTTVDCSGKSLASV-PTGI---PTTTQVLYLYDNQ---------ITKLEPGVFDRLTQLTRLDLDNNQ------LTVLPA 71 (170)
T ss_dssp TTEEECTTSCCSSC-CSCC---CTTCSEEECCSSC---------CCCCCTTTTTTCTTCSEEECCSSC------CCCCCT
T ss_pred CCEEEeCCCCcCcc-CccC---CCCCcEEEcCCCc---------CCccChhhhcCcccCCEEECCCCC------cCccCh
Confidence 56788887666531 1111 3678888888863 333333446678888888888753 233333
Q ss_pred hhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 015585 99 MGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS 146 (404)
Q Consensus 99 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 146 (404)
..+ ..+++|+.|+++++ .++... ...+..+++|+.|+++++.
T Consensus 72 ~~f----~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 72 GVF----DKLTQLTQLSLNDN-QLKSIP-RGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTT----TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred hhc----cCCCCCCEEECCCC-ccCEeC-HHHhcCCCCCCEEEeCCCC
Confidence 222 45778888888874 333211 1124567888888888885
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.54 E-value=1.4e-05 Score=63.86 Aligned_cols=107 Identities=14% Similarity=0.036 Sum_probs=69.6
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHh
Q 015585 265 SQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRW 344 (404)
Q Consensus 265 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 344 (404)
.+.|++|+++++ .++......+ ..+++|+.|++++|. ++...-..+. .+++|+.|+++++ .++......
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~f~-------~l~~L~~L~L~~N-~l~~~~~~~ 97 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPGVF-DRLTQLTRLDLDNNQ-LTVLPAGVFD-------KLTQLTQLSLNDN-QLKSIPRGA 97 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCCCcEEEcCCC-cCCccChhhh-cCcccCCEEECCCCC-cCccChhhcc-------CCCCCCEEECCCC-ccCEeCHHH
Confidence 468999999985 5543211112 357899999999985 5532111122 5889999999994 666433333
Q ss_pred hhcCCCCcccEEecCCccccCC--ChHHHHHHHhcCCccEEE
Q 015585 345 VKRPSFRGLHWLGIGQTRLASK--GNPVITEIHNERPWLTFC 384 (404)
Q Consensus 345 l~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~~~~~l~l~ 384 (404)
+. .+++|+.|++++|+++.. ....+..+.+..+.....
T Consensus 98 ~~--~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~ 137 (170)
T 3g39_A 98 FD--NLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFG 137 (170)
T ss_dssp TT--TCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEEC
T ss_pred hc--CCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceeec
Confidence 33 488999999999998654 234455566666666643
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.53 E-value=7.3e-05 Score=59.82 Aligned_cols=103 Identities=10% Similarity=-0.013 Sum_probs=62.4
Q ss_pred CcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccCh
Q 015585 19 LRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVND 98 (404)
Q Consensus 19 L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 98 (404)
-+.++++++.+... +..+ .++|++|++++|. ++......+..+++|+.|+++++. +..+..
T Consensus 14 ~~~l~~~~n~l~~i-P~~~---~~~L~~L~Ls~N~---------l~~~~~~~~~~l~~L~~L~Ls~N~------l~~i~~ 74 (174)
T 2r9u_A 14 QTLVNCQNIRLASV-PAGI---PTDKQRLWLNNNQ---------ITKLEPGVFDHLVNLQQLYFNSNK------LTAIPT 74 (174)
T ss_dssp SSEEECCSSCCSSC-CSCC---CTTCSEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC------CCCCCT
T ss_pred CcEEEeCCCCCCcc-CCCc---CCCCcEEEeCCCC---------ccccCHHHhcCCcCCCEEECCCCC------CCccCh
Confidence 36778877666421 1111 3688888888863 333323446778888888888753 233332
Q ss_pred hhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 015585 99 MGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS 146 (404)
Q Consensus 99 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 146 (404)
.. ...+++|+.|+++++ .++... ...+..+++|+.|+++++.
T Consensus 75 ~~----~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 75 GV----FDKLTQLTQLDLNDN-HLKSIP-RGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TT----TTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC
T ss_pred hH----hCCcchhhEEECCCC-ccceeC-HHHhccccCCCEEEeCCCC
Confidence 21 145688888888874 333211 1124557888999998885
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.50 E-value=1.5e-05 Score=63.91 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=65.9
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHh
Q 015585 265 SQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRW 344 (404)
Q Consensus 265 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 344 (404)
.+.|++|+++++ .++..... ....+++|+.|++++|. ++......+. .+++|+.|++++ +.++......
T Consensus 32 ~~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i~~~~~~-------~l~~L~~L~L~~-N~l~~l~~~~ 100 (174)
T 2r9u_A 32 PTDKQRLWLNNN-QITKLEPG-VFDHLVNLQQLYFNSNK-LTAIPTGVFD-------KLTQLTQLDLND-NHLKSIPRGA 100 (174)
T ss_dssp CTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCS-SCCCCCCTTT
T ss_pred CCCCcEEEeCCC-CccccCHH-HhcCCcCCCEEECCCCC-CCccChhHhC-------CcchhhEEECCC-CccceeCHHH
Confidence 368999999885 55432111 12357899999999885 5531111111 578999999998 4666433322
Q ss_pred hhcCCCCcccEEecCCccccCCC--hHHHHHHHhcCCccEE
Q 015585 345 VKRPSFRGLHWLGIGQTRLASKG--NPVITEIHNERPWLTF 383 (404)
Q Consensus 345 l~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~~~~~l~l 383 (404)
+. .+++|+.|++++|.+.... ...+..+.+..+....
T Consensus 101 ~~--~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~~~ 139 (174)
T 2r9u_A 101 FD--NLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVM 139 (174)
T ss_dssp TT--TCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGGEE
T ss_pred hc--cccCCCEEEeCCCCcccccccHHHHHHHHHhcccccc
Confidence 33 4889999999999886442 2334455555554443
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.47 E-value=1.4e-05 Score=73.20 Aligned_cols=151 Identities=16% Similarity=0.242 Sum_probs=75.6
Q ss_pred cccCCC-CCcEEeccC--CCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccC
Q 015585 12 SYYSSF-NLRSLSLVL--DVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHN 88 (404)
Q Consensus 12 ~~~~~~-~L~~L~L~~--~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 88 (404)
+|..+. .|+.+.+.. ..+.+..+ ..|++|+++.+..+.. ..++..+-.++..|.+|+.+.+...
T Consensus 58 aF~~~~~~L~sI~iP~svt~Ig~~AF----~~C~~L~~i~~~~n~p------~~l~~Ig~~aF~~c~~L~~i~~~~~--- 124 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDTVTEIGSNAF----YNCTSLKRVTIQDNKP------SCVKKIGRQAFMFCSELTDIPILDS--- 124 (394)
T ss_dssp TTTTCCSCCCEEEECTTCCEECTTTT----TTCTTCCEEEEGGGCC------CCCCEECTTTTTTCTTCCBCGGGTT---
T ss_pred hccCCCCcCEEEEECCCeeEEhHHHh----hCCccCceEeecCCCC------CeeeEechhhchhcccceeeccCCc---
Confidence 355553 588888873 33333322 3488888888875410 1233333344556677776665432
Q ss_pred CCCCccccChhhHHHHHhcCCCCcEEEcCCC-CCCCHHHHHHHHHhCCCCcEEEecCCC-CCCHHHHHHHHcCCCCccEE
Q 015585 89 HQGTFKRVNDMGMFLLSEGCKGLESVRLGGF-SKVSDAGFAAILLSCHSLKKFEVRSAS-FLSDLAFHDLTGVPCALVEV 166 (404)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L 166 (404)
...+....+ ..|.+|+.+.+... ..+.+. ....|.+|+.+.+.... .+....+ ....|+++
T Consensus 125 ----~~~I~~~aF----~~c~~L~~i~lp~~~~~I~~~----~F~~c~~L~~i~~~~~~~~I~~~aF-----~~~~l~~i 187 (394)
T 4gt6_A 125 ----VTEIDSEAF----HHCEELDTVTIPEGVTSVADG----MFSYCYSLHTVTLPDSVTAIEERAF-----TGTALTQI 187 (394)
T ss_dssp ----CSEECTTTT----TTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTT-----TTCCCSEE
T ss_pred ----cceehhhhh----hhhcccccccccceeeeeccc----ceecccccccccccceeeEeccccc-----cccceeEE
Confidence 222333222 45677888777542 112211 13456777777776541 1111111 33567777
Q ss_pred EccCCCCCCHHHHHHhhCCCCCCEEecc
Q 015585 167 RLLWCRLITSETVKKLASSRNLEVLDLG 194 (404)
Q Consensus 167 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 194 (404)
.+... +...+..++..|..++.....
T Consensus 188 ~ip~~--~~~i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 188 HIPAK--VTRIGTNAFSECFALSTITSD 213 (394)
T ss_dssp EECTT--CCEECTTTTTTCTTCCEEEEC
T ss_pred EECCc--ccccccchhhhccccceeccc
Confidence 76542 111122233456666665543
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.07 E-value=0.0014 Score=56.00 Aligned_cols=113 Identities=21% Similarity=0.247 Sum_probs=68.4
Q ss_pred cccCCCCCcE--EeccCCCCC--hHHHHHHHhhCCCccEEeecCCCCCCcccccccch-hhhh-hhcCCCCCceEEeccc
Q 015585 12 SYYSSFNLRS--LSLVLDVIT--DELLITITASLPFLVELDLEDRPNTEPLARLDLTS-SGLQ-SLGSCHHLTGLSLTRC 85 (404)
Q Consensus 12 ~~~~~~~L~~--L~L~~~~~~--~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~-~l~~~~~L~~L~l~~~ 85 (404)
.+...+.|+. ++++.+... ...+..+...+++|++|+|++|.. +. ..+. .+..+++|+.|+|+++
T Consensus 136 ~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l---------~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 136 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRL---------YRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp TGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCC---------CCCGGGTTHHHHSTTCCEEECTTS
T ss_pred HcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCC---------CCCccchhHHhhCCCCCEEECCCC
Confidence 3555666666 555544322 123333446689999999999743 22 1222 3458999999999885
Q ss_pred ccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCH------HHHHHHHHhCCCCcEEEecC
Q 015585 86 RHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSD------AGFAAILLSCHSLKKFEVRS 144 (404)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~------~~~~~l~~~~~~L~~L~l~~ 144 (404)
. +..+ ..+..+ ..+ +|++|+++++. +.. .-...++..+|+|+.|+=..
T Consensus 207 ~------i~~~--~~l~~l-~~l-~L~~L~L~~Np-l~~~~~~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 207 E------LKSE--RELDKI-KGL-KLEELWLDGNS-LCDTFRDQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp C------CCSG--GGGGGG-TTS-CCSEEECTTST-TGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred c------cCCc--hhhhhc-ccC-CcceEEccCCc-CccccCcchhHHHHHHHHCcccCeECCcC
Confidence 3 2222 122222 223 89999999853 332 22356678899999987543
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.93 E-value=0.00012 Score=66.99 Aligned_cols=289 Identities=13% Similarity=0.156 Sum_probs=142.6
Q ss_pred ccccCCCCCcEEeccCCC---CChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEeccccc
Q 015585 11 SSYYSSFNLRSLSLVLDV---ITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRH 87 (404)
Q Consensus 11 ~~~~~~~~L~~L~L~~~~---~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 87 (404)
.+|..|.+|+.+.+..+. +..-.-..+ ..|.+|+.+.+... ++..+-.++..+.+|+.+.+...
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF-~~c~~L~~i~~~~~----------~~~I~~~aF~~c~~L~~i~lp~~-- 147 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAF-MFCSELTDIPILDS----------VTEIDSEAFHHCEELDTVTIPEG-- 147 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTT-TTCTTCCBCGGGTT----------CSEECTTTTTTCTTCCEEECCTT--
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhc-hhcccceeeccCCc----------cceehhhhhhhhcccccccccce--
Confidence 458899999999987432 221111112 23777887776652 33333445567888999888542
Q ss_pred CCCCCccccChhhHHHHHhcCCCCcEEEcCCC-CCCCHHHHHHHHHhCCCCcEEEecCCCC-CCHHHHHHHHcCCCCccE
Q 015585 88 NHQGTFKRVNDMGMFLLSEGCKGLESVRLGGF-SKVSDAGFAAILLSCHSLKKFEVRSASF-LSDLAFHDLTGVPCALVE 165 (404)
Q Consensus 88 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~~l~~~~~~~~~L~~ 165 (404)
...+.+..+ ..|.+|+.+.+... ..+....+ .+.+|+.+.+..... +... ....+..+..
T Consensus 148 -----~~~I~~~~F----~~c~~L~~i~~~~~~~~I~~~aF-----~~~~l~~i~ip~~~~~i~~~----af~~c~~l~~ 209 (394)
T 4gt6_A 148 -----VTSVADGMF----SYCYSLHTVTLPDSVTAIEERAF-----TGTALTQIHIPAKVTRIGTN----AFSECFALST 209 (394)
T ss_dssp -----CCEECTTTT----TTCTTCCEEECCTTCCEECTTTT-----TTCCCSEEEECTTCCEECTT----TTTTCTTCCE
T ss_pred -----eeeecccce----ecccccccccccceeeEeccccc-----cccceeEEEECCcccccccc----hhhhccccce
Confidence 223333322 46778888887652 12222111 235688888765421 1111 1234556666
Q ss_pred EEccCCCCCCHHHH------------HHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC--ccCHHHHHHH
Q 015585 166 VRLLWCRLITSETV------------KKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA--DITDSGLSIL 231 (404)
Q Consensus 166 L~l~~~~~~~~~~~------------~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~l~~~~l~~l 231 (404)
.............. ........+..+.+.. .+....-.++..+.+|+.+.+... .+....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~a---- 283 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSVVSIGTGA---- 283 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTCCEECTTT----
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCC--cceEcccceeeecccccEEecccccceecCcc----
Confidence 55433211000000 0000122334444422 222222344567778888887654 222211
Q ss_pred HhcCCCcCEEeecCCC-CCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHH
Q 015585 232 AQGNLPIMNLCLRGCK-RVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASV 310 (404)
Q Consensus 232 ~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 310 (404)
...|++|+.+.+...- .+++. .+ ..+.+|+.+.+.. .++..+-. ....|.+|+.+.+..+ ++.-+-
T Consensus 284 F~~c~~L~~i~l~~~i~~I~~~---aF-----~~c~~L~~i~lp~--~v~~I~~~-aF~~C~~L~~i~ip~s--v~~I~~ 350 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRITELPES---VF-----AGCISLKSIDIPE--GITQILDD-AFAGCEQLERIAIPSS--VTKIPE 350 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTT---TT-----TTCTTCCEEECCT--TCCEECTT-TTTTCTTCCEEEECTT--CCBCCG
T ss_pred cccccccccccCCCcccccCce---ee-----cCCCCcCEEEeCC--cccEehHh-HhhCCCCCCEEEECcc--cCEEhH
Confidence 1257778888875321 12222 12 3567888888854 22221111 1235788999988653 332222
Q ss_pred HHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585 311 EALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR 362 (404)
Q Consensus 311 ~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 362 (404)
.++. +|++|+.+.+.+. ......+. .+..|+.+.+..+.
T Consensus 351 ~aF~-------~C~~L~~i~~~~~----~~~~~~~~--~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 351 SAFS-------NCTALNNIEYSGS----RSQWNAIS--TDSGLQNLPVAPGS 389 (394)
T ss_dssp GGGT-------TCTTCCEEEESSC----HHHHHTCB--CCCCC---------
T ss_pred hHhh-------CCCCCCEEEECCc----eeehhhhh--ccCCCCEEEeCCCC
Confidence 3344 5889999998773 22233332 47788888776554
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.77 E-value=0.001 Score=59.55 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=39.6
Q ss_pred hCCCccEEeecC-CCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCC
Q 015585 40 SLPFLVELDLED-RPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGG 118 (404)
Q Consensus 40 ~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 118 (404)
.+++|++|+|++ | .++......+..+++|+.|+|+++. +..+.+..+ ..+++|+.|+|++
T Consensus 29 ~~~~L~~L~l~~~n---------~l~~~~~~~~~~l~~L~~L~l~~N~------l~~~~~~~~----~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 29 GAENLTELYIENQQ---------HLQHLELRDLRGLGELRNLTIVKSG------LRFVAPDAF----HFTPRLSRLNLSF 89 (347)
T ss_dssp SCSCCSEEECCSCS---------SCCEECGGGSCSCCCCSEEECCSSC------CCEECTTGG----GSCSCCCEEECCS
T ss_pred CCCCeeEEEccCCC---------CCCCcChhHhccccCCCEEECCCCc------cceeCHHHh----cCCcCCCEEeCCC
Confidence 355666666664 4 2222222335566666666666532 222222221 3456666666666
Q ss_pred CCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 015585 119 FSKVSDAGFAAILLSCHSLKKFEVRSAS 146 (404)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 146 (404)
+ .++... ...+..++ |+.|++.++.
T Consensus 90 N-~l~~~~-~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 90 N-ALESLS-WKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp S-CCSCCC-STTTCSCC-CCEEECCSSC
T ss_pred C-ccceeC-HHHcccCC-ceEEEeeCCC
Confidence 3 322110 00111222 6667766664
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.71 E-value=0.004 Score=53.06 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=27.3
Q ss_pred CCCCCCEEeccCCCCCChH-HH-HhhhCCCCCCEEEccCCccCHH-HHHHHHhcCCCcCEEeecCCC
Q 015585 184 SSRNLEVLDLGGCKSIADT-CL-RSISCLRKLTALNLTGADITDS-GLSILAQGNLPIMNLCLRGCK 247 (404)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~-~~-~~l~~~~~L~~L~l~~~~l~~~-~l~~l~~~~~~L~~L~l~~~~ 247 (404)
.+++|+.|+|++ +.+... .+ ..+..+++|+.|+|++|.+++. .+..+. .+ +|++|.+.+++
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTST
T ss_pred hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCc
Confidence 355555555555 233321 11 1223455566666655555432 111111 12 56666665555
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.43 E-value=0.0013 Score=58.83 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=16.4
Q ss_pred CCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccC
Q 015585 159 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGG 195 (404)
Q Consensus 159 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 195 (404)
.+++|+.|+|+++. +.......+..+++|++|+|++
T Consensus 54 ~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 54 GLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred cccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 44555555555543 2222222334455555555555
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.91 E-value=0.16 Score=45.79 Aligned_cols=124 Identities=13% Similarity=0.121 Sum_probs=65.8
Q ss_pred cCCCCcEEEcCCC-CCCCHHHHHHHHHhCCCCcEEEecCCC-CCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhC
Q 015585 107 GCKGLESVRLGGF-SKVSDAGFAAILLSCHSLKKFEVRSAS-FLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLAS 184 (404)
Q Consensus 107 ~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 184 (404)
.+.+|+.+.+... ..+... ....|.+|+.+.+.... .+... .+..+..|+.+.+... +...+-.++..
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~----~f~~~~~L~~i~lp~~v~~I~~~----aF~~~~~l~~i~l~~~--i~~i~~~aF~~ 284 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDG----AFYGMKALDEIAIPKNVTSIGSF----LLQNCTALKTLNFYAK--VKTVPYLLCSG 284 (379)
T ss_dssp TCSSCSEEECCTTCCEECTT----TTTTCSSCCEEEECTTCCEECTT----TTTTCTTCCEEEECCC--CSEECTTTTTT
T ss_pred cccccceeeeccceeEEccc----cccCCccceEEEcCCCccEeCcc----ccceeehhcccccccc--ceecccccccc
Confidence 4566777766441 111111 13456777777776541 11111 2235667777777542 22222223456
Q ss_pred CCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC--ccCHHHHHHHHhcCCCcCEEeecC
Q 015585 185 SRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA--DITDSGLSILAQGNLPIMNLCLRG 245 (404)
Q Consensus 185 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~l~~~~l~~l~~~~~~L~~L~l~~ 245 (404)
|++|+.+.+.. ..+..-.-.++..|.+|+.+.+..+ .+.+..+ ..|.+|+.+.+..
T Consensus 285 c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF----~~C~~L~~i~ip~ 342 (379)
T 4h09_A 285 CSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAF----KNCKALSTISYPK 342 (379)
T ss_dssp CTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCCCCCCT
T ss_pred ccccccccccc-cccceehhhhhcCCCCCCEEEcCccccEEHHHHh----hCCCCCCEEEECC
Confidence 78888888765 2344333445667788888888653 2332222 2577787777743
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.73 E-value=0.096 Score=39.08 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=16.5
Q ss_pred cccEEecCCccccCCChHHHHHHHhcCCccE-EEecccccccc
Q 015585 352 GLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 393 (404)
Q Consensus 352 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~ 393 (404)
+|+.|++++|.++......+ ..+++++ +.+.+|++.|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f----~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLL----DALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTG----GGCTTCCEEECCSSCCBCS
T ss_pred CCCEEECCCCcCCccChhhh----hhccccCEEEecCCCeecc
Confidence 45555555555444322211 2334444 55555555544
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=84.01 E-value=0.52 Score=42.29 Aligned_cols=126 Identities=18% Similarity=0.238 Sum_probs=77.5
Q ss_pred cccCCCCCcEEeccC--CCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCC
Q 015585 12 SYYSSFNLRSLSLVL--DVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNH 89 (404)
Q Consensus 12 ~~~~~~~L~~L~L~~--~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 89 (404)
.+..+.+|+.+.+.. ..+.... ...+..|+++.+..+ ++..+-.++..+.+|+.+.+...
T Consensus 212 ~f~~~~~l~~i~~~~~~~~i~~~~----f~~~~~L~~i~lp~~----------v~~I~~~aF~~~~~l~~i~l~~~---- 273 (379)
T 4h09_A 212 GFSYGKNLKKITITSGVTTLGDGA----FYGMKALDEIAIPKN----------VTSIGSFLLQNCTALKTLNFYAK---- 273 (379)
T ss_dssp TTTTCSSCSEEECCTTCCEECTTT----TTTCSSCCEEEECTT----------CCEECTTTTTTCTTCCEEEECCC----
T ss_pred ccccccccceeeeccceeEEcccc----ccCCccceEEEcCCC----------ccEeCccccceeehhcccccccc----
Confidence 466778888888874 2222211 134788999998763 33333445667888999888542
Q ss_pred CCCccccChhhHHHHHhcCCCCcEEEcCCC--CCCCHHHHHHHHHhCCCCcEEEecCC-CCCCHHHHHHHHcCCCCccEE
Q 015585 90 QGTFKRVNDMGMFLLSEGCKGLESVRLGGF--SKVSDAGFAAILLSCHSLKKFEVRSA-SFLSDLAFHDLTGVPCALVEV 166 (404)
Q Consensus 90 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L 166 (404)
...+....+ ..|++|+.+.+.+. ..+.+. .+..|.+|+.+.+... ..+... .+..|.+|+++
T Consensus 274 ---i~~i~~~aF----~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i 338 (379)
T 4h09_A 274 ---VKTVPYLLC----SGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPTALKTIQVY----AFKNCKALSTI 338 (379)
T ss_dssp ---CSEECTTTT----TTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCCC
T ss_pred ---ceecccccc----ccccccccccccccccceehhh----hhcCCCCCCEEEcCccccEEHHH----HhhCCCCCCEE
Confidence 222333322 57889999998752 122222 2567899999999654 222222 23478889988
Q ss_pred EccC
Q 015585 167 RLLW 170 (404)
Q Consensus 167 ~l~~ 170 (404)
.+..
T Consensus 339 ~ip~ 342 (379)
T 4h09_A 339 SYPK 342 (379)
T ss_dssp CCCT
T ss_pred EECC
Confidence 8854
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=67.30 E-value=4.5 Score=29.81 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=18.7
Q ss_pred CCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC
Q 015585 187 NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA 221 (404)
Q Consensus 187 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 221 (404)
+|++|+|++ +.++......+..+++|+.|+|.+|
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCC
Confidence 566666665 3444433344455566666666665
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.53 E-value=27 Score=24.12 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=15.6
Q ss_pred CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccC
Q 015585 184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTG 220 (404)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 220 (404)
.|..|+.+.|.. .++.-+-.++..|.+|+.+.+..
T Consensus 18 ~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 455555555543 23322333344455555555543
Done!