Query 015587
Match_columns 404
No_of_seqs 276 out of 1832
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:42:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4163 Prolyl-tRNA synthetase 100.0 6E-119 1E-123 867.3 26.4 402 1-404 81-551 (551)
2 PRK08661 prolyl-tRNA synthetas 100.0 1E-97 2E-102 768.1 44.8 394 1-404 27-477 (477)
3 TIGR00408 proS_fam_I prolyl-tR 100.0 1E-96 2E-101 759.2 41.9 395 1-404 21-472 (472)
4 COG0442 ProS Prolyl-tRNA synth 100.0 6.6E-77 1.4E-81 604.9 17.3 394 1-404 31-499 (500)
5 PRK12325 prolyl-tRNA synthetas 100.0 3.5E-59 7.6E-64 477.7 33.1 289 6-303 35-438 (439)
6 PRK09194 prolyl-tRNA synthetas 100.0 4.1E-58 8.9E-63 483.5 34.2 289 5-303 34-561 (565)
7 TIGR00409 proS_fam_II prolyl-t 100.0 3.2E-57 6.9E-62 474.2 34.3 290 5-304 34-567 (568)
8 cd00862 ProRS_anticodon_zinc P 100.0 2.9E-56 6.3E-61 411.4 25.6 202 197-404 1-202 (202)
9 PRK14799 thrS threonyl-tRNA sy 100.0 1.6E-53 3.5E-58 442.6 29.5 286 5-308 155-533 (545)
10 PRK03991 threonyl-tRNA synthet 100.0 2E-53 4.3E-58 447.7 30.2 293 1-307 208-593 (613)
11 PRK12444 threonyl-tRNA synthet 100.0 3.9E-52 8.5E-57 444.5 30.6 285 5-307 261-636 (639)
12 TIGR00418 thrS threonyl-tRNA s 100.0 1.3E-51 2.8E-56 435.3 30.8 286 1-304 181-561 (563)
13 PLN02837 threonine-tRNA ligase 100.0 4.4E-51 9.5E-56 432.8 29.8 284 6-308 235-610 (614)
14 PRK12305 thrS threonyl-tRNA sy 100.0 1.5E-50 3.2E-55 428.1 30.3 285 6-308 194-571 (575)
15 PLN02908 threonyl-tRNA synthet 100.0 6.8E-50 1.5E-54 428.8 31.9 285 5-308 308-684 (686)
16 PRK00413 thrS threonyl-tRNA sy 100.0 6.3E-49 1.4E-53 420.5 31.5 287 5-308 257-634 (638)
17 PRK04173 glycyl-tRNA synthetas 100.0 9.6E-49 2.1E-53 401.2 30.3 293 4-305 24-455 (456)
18 COG0124 HisS Histidyl-tRNA syn 100.0 9.3E-47 2E-51 379.3 27.8 282 1-306 1-428 (429)
19 KOG2324 Prolyl-tRNA synthetase 100.0 1.2E-44 2.6E-49 344.8 23.4 287 5-302 39-426 (457)
20 COG0441 ThrS Threonyl-tRNA syn 100.0 9.7E-44 2.1E-48 368.3 24.4 285 6-308 208-582 (589)
21 CHL00201 syh histidine-tRNA sy 100.0 2.9E-42 6.3E-47 352.4 30.3 284 1-309 1-421 (430)
22 cd00772 ProRS_core Prolyl-tRNA 100.0 2E-40 4.3E-45 318.1 20.2 179 1-180 15-194 (264)
23 PLN02530 histidine-tRNA ligase 100.0 9.8E-40 2.1E-44 338.3 26.8 272 1-298 67-486 (487)
24 KOG1637 Threonyl-tRNA syntheta 100.0 1.6E-40 3.5E-45 325.4 18.7 281 7-307 181-556 (560)
25 PRK00037 hisS histidyl-tRNA sy 100.0 3.2E-37 7E-42 314.1 28.9 274 1-306 1-411 (412)
26 TIGR00389 glyS_dimeric glycyl- 100.0 1.9E-37 4.1E-42 319.8 26.1 295 4-305 23-550 (551)
27 PLN02734 glycyl-tRNA synthetas 100.0 1.4E-37 3E-42 325.1 24.9 293 4-307 95-662 (684)
28 cd00778 ProRS_core_arch_euk Pr 100.0 3.8E-38 8.2E-43 302.1 15.9 179 1-179 15-193 (261)
29 PRK14894 glycyl-tRNA synthetas 100.0 1.1E-36 2.4E-41 306.1 26.2 296 4-306 26-537 (539)
30 cd00779 ProRS_core_prok Prolyl 100.0 4.7E-38 1E-42 300.5 15.2 162 5-172 18-179 (255)
31 PRK12420 histidyl-tRNA synthet 100.0 1.9E-35 4.1E-40 302.0 28.2 275 1-298 1-422 (423)
32 cd00771 ThrRS_core Threonyl-tR 100.0 2.9E-36 6.2E-41 294.4 19.2 163 5-174 17-182 (298)
33 PLN02972 Histidyl-tRNA synthet 100.0 6.8E-35 1.5E-39 308.5 28.4 276 4-307 327-761 (763)
34 COG0423 GRS1 Glycyl-tRNA synth 100.0 4.1E-35 8.8E-40 293.5 23.6 297 4-307 26-552 (558)
35 cd00770 SerRS_core Seryl-tRNA 100.0 3.6E-35 7.8E-40 286.4 16.8 191 7-207 41-296 (297)
36 TIGR00442 hisS histidyl-tRNA s 100.0 2.3E-33 5.1E-38 284.5 28.4 260 5-288 1-397 (397)
37 TIGR00414 serS seryl-tRNA synt 100.0 2.6E-33 5.7E-38 284.4 19.0 192 6-207 161-417 (418)
38 PRK05431 seryl-tRNA synthetase 100.0 2.3E-33 4.9E-38 285.4 18.3 192 7-208 159-416 (425)
39 KOG1936 Histidyl-tRNA syntheta 100.0 9E-33 2E-37 269.0 21.2 279 3-307 59-516 (518)
40 TIGR00415 serS_MJ seryl-tRNA s 100.0 2.5E-32 5.5E-37 276.3 18.6 166 1-169 206-398 (520)
41 PRK00960 seryl-tRNA synthetase 100.0 2.6E-30 5.6E-35 265.2 15.6 165 1-168 206-397 (517)
42 PF00587 tRNA-synt_2b: tRNA sy 100.0 6.2E-30 1.3E-34 230.6 13.9 147 20-172 1-149 (173)
43 KOG2298 Glycyl-tRNA synthetase 100.0 1.1E-28 2.3E-33 242.7 13.2 299 4-308 32-594 (599)
44 PRK12292 hisZ ATP phosphoribos 99.9 2.9E-26 6.4E-31 232.0 23.8 150 4-166 3-153 (391)
45 cd00670 Gly_His_Pro_Ser_Thr_tR 99.9 2.1E-27 4.5E-32 223.7 13.8 155 17-174 1-155 (235)
46 cd00774 GlyRS-like_core Glycyl 99.9 4.5E-26 9.8E-31 217.8 10.0 147 4-166 18-167 (254)
47 cd02426 Pol_gamma_b_Cterm C-te 99.9 3.8E-25 8.2E-30 189.6 14.1 116 189-307 10-127 (128)
48 PLN02678 seryl-tRNA synthetase 99.9 2.6E-24 5.6E-29 218.6 15.2 192 9-208 165-424 (448)
49 PF09180 ProRS-C_1: Prolyl-tRN 99.9 7.5E-25 1.6E-29 166.6 6.9 68 331-404 1-68 (68)
50 PRK12421 ATP phosphoribosyltra 99.9 2.9E-23 6.2E-28 209.9 15.9 149 4-166 7-156 (392)
51 TIGR00443 hisZ_biosyn_reg ATP 99.9 8.9E-22 1.9E-26 193.8 14.1 159 11-191 1-161 (314)
52 PLN02320 seryl-tRNA synthetase 99.9 1.5E-21 3.2E-26 199.6 14.5 153 7-169 220-379 (502)
53 PRK12293 hisZ ATP phosphoribos 99.9 4.7E-21 1E-25 185.5 14.2 156 2-191 3-159 (281)
54 cd00773 HisRS-like_core Class 99.9 7.8E-21 1.7E-25 182.4 15.6 212 18-270 2-217 (261)
55 PF13393 tRNA-synt_His: Histid 99.8 3.8E-20 8.2E-25 181.8 16.1 160 9-191 1-163 (311)
56 COG0172 SerS Seryl-tRNA synthe 99.8 4.1E-19 8.8E-24 177.9 16.2 154 6-169 162-319 (429)
57 PRK12295 hisZ ATP phosphoribos 99.8 3E-18 6.5E-23 172.0 14.3 145 21-191 7-154 (373)
58 cd00858 GlyRS_anticodon GlyRS 99.8 4.7E-18 1E-22 144.5 13.2 103 198-306 18-120 (121)
59 PF03129 HGTP_anticodon: Antic 99.8 2.6E-18 5.5E-23 139.2 10.7 94 208-305 1-94 (94)
60 cd00861 ProRS_anticodon_short 99.7 2.6E-17 5.7E-22 133.0 11.4 93 206-302 1-93 (94)
61 PRK14938 Ser-tRNA(Thr) hydrola 99.7 2.2E-16 4.7E-21 155.6 14.5 114 183-303 251-364 (387)
62 COG3705 HisZ ATP phosphoribosy 99.7 5.6E-17 1.2E-21 161.2 10.4 156 3-173 2-159 (390)
63 KOG2509 Seryl-tRNA synthetase 99.7 5.5E-16 1.2E-20 152.8 13.3 189 11-207 178-432 (455)
64 cd00860 ThrRS_anticodon ThrRS 99.6 1.6E-15 3.5E-20 121.4 11.8 90 206-302 1-90 (91)
65 cd00738 HGTP_anticodon HGTP an 99.6 3.3E-14 7.1E-19 114.4 11.8 93 206-302 1-93 (94)
66 TIGR02367 PylS pyrrolysyl-tRNA 99.5 8.4E-14 1.8E-18 139.7 13.9 133 18-169 239-373 (453)
67 cd00768 class_II_aaRS-like_cor 99.5 1.2E-13 2.6E-18 127.0 13.5 134 20-166 1-134 (211)
68 PRK12294 hisZ ATP phosphoribos 99.4 1.9E-12 4.1E-17 124.6 12.1 123 19-165 8-130 (272)
69 PRK09537 pylS pyrolysyl-tRNA s 99.4 4.3E-12 9.4E-17 127.7 13.2 130 21-169 206-337 (417)
70 cd00859 HisRS_anticodon HisRS 99.3 2.8E-11 6E-16 95.9 11.0 88 208-302 3-90 (91)
71 PRK04172 pheS phenylalanyl-tRN 99.2 2.3E-11 5E-16 126.7 9.7 142 8-166 223-403 (489)
72 COG0442 ProS Prolyl-tRNA synth 99.1 5.9E-11 1.3E-15 122.2 6.7 115 183-302 383-498 (500)
73 PRK07080 hypothetical protein; 98.9 3.8E-08 8.3E-13 95.1 14.5 153 6-169 35-212 (317)
74 PRK09350 poxB regulator PoxA; 98.8 7.3E-09 1.6E-13 101.8 7.9 118 17-154 4-124 (306)
75 cd00669 Asp_Lys_Asn_RS_core As 98.8 4.1E-08 8.8E-13 94.7 12.1 113 19-154 2-115 (269)
76 PTZ00326 phenylalanyl-tRNA syn 98.8 7.5E-08 1.6E-12 99.1 13.6 145 14-166 224-410 (494)
77 cd00777 AspRS_core Asp tRNA sy 98.4 1.9E-06 4.1E-11 83.7 11.0 119 19-164 2-122 (280)
78 PF00152 tRNA-synt_2: tRNA syn 98.4 7.6E-06 1.7E-10 81.5 14.1 120 17-154 21-140 (335)
79 cd00776 AsxRS_core Asx tRNA sy 98.3 4.3E-06 9.4E-11 82.8 11.2 114 17-154 23-137 (322)
80 PF01409 tRNA-synt_2d: tRNA sy 98.2 1.5E-05 3.2E-10 76.0 10.8 135 18-165 16-155 (247)
81 TIGR00462 genX lysyl-tRNA synt 98.2 1E-05 2.2E-10 79.6 9.7 117 19-154 2-119 (304)
82 cd00775 LysRS_core Lys_tRNA sy 98.1 2.7E-05 5.8E-10 77.4 12.7 115 17-154 7-122 (329)
83 TIGR00459 aspS_bact aspartyl-t 98.1 2.3E-05 5E-10 83.0 11.9 121 17-164 137-259 (583)
84 TIGR00458 aspS_arch aspartyl-t 98.1 4.4E-05 9.4E-10 78.6 12.7 115 16-154 131-246 (428)
85 COG0173 AspS Aspartyl-tRNA syn 98.0 4.1E-05 8.8E-10 78.9 11.9 125 17-166 140-264 (585)
86 PRK06462 asparagine synthetase 98.0 4E-05 8.7E-10 76.3 11.4 120 17-154 29-151 (335)
87 COG2269 Truncated, possibly in 98.0 2.2E-05 4.7E-10 74.7 8.2 129 10-155 4-136 (322)
88 PLN02903 aminoacyl-tRNA ligase 98.0 5.9E-05 1.3E-09 80.5 12.2 122 17-164 202-325 (652)
89 PRK00476 aspS aspartyl-tRNA sy 98.0 5.1E-05 1.1E-09 80.8 11.6 121 17-164 140-262 (588)
90 PRK00484 lysS lysyl-tRNA synth 98.0 8.1E-05 1.8E-09 77.8 13.0 123 16-164 170-293 (491)
91 PRK05159 aspC aspartyl-tRNA sy 97.9 8.9E-05 1.9E-09 76.5 12.1 114 17-154 135-250 (437)
92 PTZ00417 lysine-tRNA ligase; P 97.9 9.9E-05 2.2E-09 78.3 12.4 116 17-154 252-367 (585)
93 KOG1035 eIF-2alpha kinase GCN2 97.9 0.00021 4.5E-09 79.7 14.9 133 11-163 925-1058(1351)
94 PRK00488 pheS phenylalanyl-tRN 97.9 0.00016 3.4E-09 71.6 12.7 128 16-164 105-236 (339)
95 PF12745 HGTP_anticodon2: Anti 97.9 0.00013 2.9E-09 70.4 11.9 98 206-308 5-108 (273)
96 PRK12820 bifunctional aspartyl 97.9 8.6E-05 1.9E-09 80.0 11.6 115 17-154 155-270 (706)
97 PTZ00385 lysyl-tRNA synthetase 97.9 0.0001 2.2E-09 78.7 12.0 116 17-154 232-347 (659)
98 PLN02502 lysyl-tRNA synthetase 97.8 0.00012 2.6E-09 77.2 11.1 116 17-154 228-343 (553)
99 PRK03932 asnC asparaginyl-tRNA 97.8 0.00017 3.7E-09 74.7 11.9 119 17-154 132-254 (450)
100 TIGR00499 lysS_bact lysyl-tRNA 97.8 0.00013 2.9E-09 76.3 11.0 115 17-154 171-286 (496)
101 TIGR00468 pheS phenylalanyl-tR 97.8 0.00019 4.1E-09 70.3 11.3 129 17-165 70-202 (294)
102 PRK12445 lysyl-tRNA synthetase 97.8 0.00013 2.7E-09 76.5 10.5 116 16-154 182-298 (505)
103 PLN02850 aspartate-tRNA ligase 97.7 0.00018 3.8E-09 75.8 10.7 114 18-154 225-339 (530)
104 TIGR00457 asnS asparaginyl-tRN 97.7 0.00022 4.8E-09 73.8 10.9 118 18-154 136-257 (453)
105 cd00496 PheRS_alpha_core Pheny 97.7 0.00084 1.8E-08 62.8 12.9 121 21-165 3-132 (218)
106 PLN02603 asparaginyl-tRNA synt 97.6 0.0003 6.5E-09 74.4 10.6 118 18-154 226-368 (565)
107 PRK02983 lysS lysyl-tRNA synth 97.6 0.00035 7.6E-09 79.4 10.8 114 18-154 770-884 (1094)
108 PLN02221 asparaginyl-tRNA synt 97.6 0.00051 1.1E-08 72.7 11.0 33 17-49 170-202 (572)
109 COG0017 AsnS Aspartyl/asparagi 97.5 0.00094 2E-08 67.9 11.9 113 17-154 133-246 (435)
110 PTZ00425 asparagine-tRNA ligas 97.4 0.0013 2.7E-08 69.8 11.6 118 17-154 214-390 (586)
111 PLN02532 asparagine-tRNA synth 97.3 0.0013 2.9E-08 70.0 10.7 47 106-154 390-436 (633)
112 PTZ00401 aspartyl-tRNA synthet 97.2 0.0023 4.9E-08 67.7 10.5 115 17-154 212-327 (550)
113 PLN02853 Probable phenylalanyl 97.1 0.0073 1.6E-07 62.5 13.4 139 18-166 220-395 (492)
114 COG0016 PheS Phenylalanyl-tRNA 97.0 0.0068 1.5E-07 59.9 11.2 136 12-165 104-244 (335)
115 TIGR00470 sepS O-phosphoseryl- 96.8 0.0039 8.4E-08 63.8 8.2 82 78-167 181-262 (533)
116 KOG2411 Aspartyl-tRNA syntheta 96.7 0.0059 1.3E-07 62.3 8.4 116 17-154 177-293 (628)
117 KOG0554 Asparaginyl-tRNA synth 96.1 0.018 3.9E-07 57.4 7.6 108 16-143 130-241 (446)
118 KOG1885 Lysyl-tRNA synthetase 96.1 0.0066 1.4E-07 61.6 4.3 116 17-154 224-339 (560)
119 PRK09616 pheT phenylalanyl-tRN 95.6 0.095 2.1E-06 55.9 11.1 128 20-165 360-490 (552)
120 KOG0556 Aspartyl-tRNA syntheta 95.6 0.021 4.6E-07 57.1 5.5 102 18-142 228-329 (533)
121 COG1190 LysU Lysyl-tRNA synthe 95.3 0.054 1.2E-06 55.9 7.5 115 18-154 180-294 (502)
122 PF09181 ProRS-C_2: Prolyl-tRN 94.6 0.074 1.6E-06 39.1 4.6 53 331-404 15-68 (68)
123 cd00769 PheRS_beta_core Phenyl 93.9 0.19 4E-06 46.1 7.0 88 22-118 3-91 (198)
124 PLN02788 phenylalanine-tRNA sy 92.5 1.5 3.3E-05 44.8 11.5 103 20-140 69-179 (402)
125 KOG2784 Phenylalanyl-tRNA synt 91.0 0.33 7.1E-06 48.2 4.7 133 21-166 214-386 (483)
126 TIGR00471 pheT_arch phenylalan 89.9 2.5 5.5E-05 45.1 10.9 129 19-165 362-492 (551)
127 PRK06253 O-phosphoseryl-tRNA s 89.1 1.3 2.8E-05 46.5 7.5 39 79-118 183-221 (529)
128 KOG0555 Asparaginyl-tRNA synth 88.8 1 2.2E-05 45.3 6.3 244 18-347 243-495 (545)
129 PLN02265 probable phenylalanyl 87.3 3.6 7.9E-05 44.4 9.9 93 19-118 397-490 (597)
130 COG2024 Phenylalanyl-tRNA synt 79.6 0.37 8E-06 48.1 -1.3 34 19-53 48-81 (536)
131 TIGR00469 pheS_mito phenylalan 78.9 14 0.00031 38.3 9.7 106 23-141 46-166 (460)
132 COG1592 Rubrerythrin [Energy p 77.9 3.7 8E-05 36.7 4.6 51 304-397 112-162 (166)
133 COG0072 PheT Phenylalanyl-tRNA 68.8 12 0.00026 40.8 6.8 92 18-118 350-442 (650)
134 CHL00192 syfB phenylalanyl-tRN 67.7 14 0.0003 40.8 6.9 84 19-116 398-481 (704)
135 PRK00629 pheT phenylalanyl-tRN 64.5 21 0.00045 40.0 7.7 92 17-117 485-576 (791)
136 cd00003 PNPsynthase Pyridoxine 63.1 26 0.00056 33.1 6.8 64 204-271 82-151 (234)
137 TIGR00559 pdxJ pyridoxine 5'-p 62.6 27 0.00059 33.0 6.9 66 204-273 82-153 (237)
138 PRK05265 pyridoxine 5'-phospha 60.4 30 0.00064 32.8 6.7 69 204-276 85-159 (239)
139 PF03740 PdxJ: Pyridoxal phosp 58.2 32 0.0007 32.6 6.6 64 204-271 83-152 (239)
140 TIGR00472 pheT_bact phenylalan 55.1 38 0.00083 37.9 7.7 84 26-116 498-581 (798)
141 PHA02278 thioredoxin-like prot 50.5 13 0.00029 30.3 2.4 25 329-353 2-30 (103)
142 cd05569 PTS_IIB_fructose PTS_I 45.9 1.5E+02 0.0033 23.6 9.4 78 224-307 14-92 (96)
143 TIGR00106 uncharacterized prot 42.1 49 0.0011 26.8 4.5 39 207-248 3-41 (97)
144 PRK10427 putative PTS system f 40.3 2.2E+02 0.0047 23.7 9.6 82 225-311 19-101 (114)
145 COG0011 Uncharacterized conser 39.7 55 0.0012 26.8 4.4 38 207-247 5-42 (100)
146 COG0854 PdxJ Pyridoxal phospha 39.5 97 0.0021 29.1 6.4 63 204-270 83-151 (243)
147 PRK10474 putative PTS system f 38.6 1.9E+02 0.0042 22.7 7.7 79 228-311 3-82 (88)
148 PF01910 DUF77: Domain of unkn 38.2 93 0.002 24.9 5.5 37 208-247 2-38 (92)
149 COG3769 Predicted hydrolase (H 34.9 2.7E+02 0.0058 26.4 8.5 42 228-271 28-69 (274)
150 COG0205 PfkA 6-phosphofructoki 34.5 3.5E+02 0.0076 27.2 10.1 109 226-347 81-194 (347)
151 PF10367 Vps39_2: Vacuolar sor 33.8 74 0.0016 25.3 4.4 19 292-310 23-41 (109)
152 COG1852 Uncharacterized conser 32.7 29 0.00062 31.8 1.9 29 331-359 79-108 (209)
153 cd02989 Phd_like_TxnDC9 Phosdu 32.4 50 0.0011 27.1 3.2 28 324-351 5-36 (113)
154 PLN03194 putative disease resi 32.1 57 0.0012 29.8 3.7 59 205-270 25-87 (187)
155 PF01520 Amidase_3: N-acetylmu 32.1 1.6E+02 0.0034 25.7 6.7 54 222-275 24-79 (175)
156 cd02696 MurNAc-LAA N-acetylmur 30.8 2.3E+02 0.0049 24.7 7.4 54 222-275 25-80 (172)
157 cd02948 TRX_NDPK TRX domain, T 29.9 49 0.0011 26.4 2.7 26 327-352 3-32 (102)
158 PF02780 Transketolase_C: Tran 29.4 1.1E+02 0.0025 25.2 4.9 34 207-247 10-44 (124)
159 KOG0190 Protein disulfide isom 28.8 1.3E+02 0.0029 31.6 6.2 112 221-351 270-398 (493)
160 KOG1547 Septin CDC10 and relat 28.3 5.5E+02 0.012 24.8 9.5 80 209-288 185-267 (336)
161 TIGR02482 PFKA_ATP 6-phosphofr 27.6 5.5E+02 0.012 25.2 10.1 75 227-310 79-153 (301)
162 TIGR02883 spore_cwlD N-acetylm 26.6 2.7E+02 0.0058 25.0 7.2 53 222-274 26-94 (189)
163 PF12146 Hydrolase_4: Putative 26.5 2.4E+02 0.0051 21.6 5.9 44 200-248 9-53 (79)
164 PF08357 SEFIR: SEFIR domain; 26.3 1.2E+02 0.0026 25.8 4.7 61 208-272 2-67 (150)
165 cd02987 Phd_like_Phd Phosducin 25.9 1E+02 0.0022 27.6 4.3 47 303-352 45-98 (175)
166 PF14116 YyzF: YyzF-like prote 25.4 39 0.00084 23.8 1.1 14 385-398 34-47 (48)
167 PRK14072 6-phosphofructokinase 25.0 4.6E+02 0.01 27.0 9.3 86 227-319 91-179 (416)
168 cd02549 Peptidase_C39A A sub-f 24.6 3.3E+02 0.0071 22.4 7.1 67 229-300 47-128 (141)
169 PRK12339 2-phosphoglycerate ki 24.4 2.1E+02 0.0046 26.0 6.2 105 226-338 84-191 (197)
170 PTZ00222 60S ribosomal protein 23.8 4.1E+02 0.009 25.5 7.9 46 230-275 139-187 (263)
171 COG3439 Uncharacterized conser 23.7 4E+02 0.0086 23.0 7.3 24 223-246 20-43 (137)
172 COG5019 CDC3 Septin family pro 23.7 7.9E+02 0.017 25.0 11.7 112 209-322 163-292 (373)
173 PRK10319 N-acetylmuramoyl-l-al 22.3 3E+02 0.0066 26.8 7.0 54 222-275 82-137 (287)
174 PF04052 TolB_N: TolB amino-te 21.8 2E+02 0.0044 22.9 5.0 78 204-282 10-92 (105)
175 TIGR00715 precor6x_red precorr 21.5 3.6E+02 0.0079 25.7 7.3 62 233-305 191-254 (256)
176 PF02590 SPOUT_MTase: Predicte 21.2 1.1E+02 0.0024 27.0 3.4 85 184-274 15-108 (155)
177 cd03003 PDI_a_ERdj5_N PDIa fam 21.2 76 0.0016 24.9 2.2 26 325-351 3-32 (101)
178 PRK12421 ATP phosphoribosyltra 21.1 1.4E+02 0.003 30.5 4.6 49 208-271 334-382 (392)
179 COG4635 HemG Flavodoxin [Energ 21.1 1.8E+02 0.0038 26.1 4.6 41 223-271 13-54 (175)
180 cd02991 UAS_ETEA UAS family, E 21.0 4.7E+02 0.01 21.6 7.1 71 229-307 43-114 (116)
181 smart00255 TIR Toll - interleu 20.9 4.5E+02 0.0098 21.5 7.2 66 207-277 2-69 (140)
182 KOG3102 Uncharacterized conser 20.9 3.2E+02 0.007 25.5 6.4 76 76-165 126-201 (269)
183 cd02952 TRP14_like Human TRX-r 20.9 78 0.0017 26.6 2.3 25 327-351 5-42 (119)
184 PF14077 WD40_alt: Alternative 20.5 1.4E+02 0.0031 20.7 3.0 29 287-316 12-40 (48)
185 cd03821 GT1_Bme6_like This fam 20.2 5.8E+02 0.013 23.8 8.7 96 230-338 274-373 (375)
No 1
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-119 Score=867.35 Aligned_cols=402 Identities=67% Similarity=1.215 Sum_probs=389.6
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+||++++|||+++|++++||+.|+.+++..+++.|++++|||+|++.++++++..|+++|+||+.|||..|+.+|++++
T Consensus 81 mieYydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAwVTr~G~seLeepi 160 (551)
T KOG4163|consen 81 MIEYYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAWVTRAGNSELEEPI 160 (551)
T ss_pred hheeecccceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCCcceEEEEecCCcccccce
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
++|||||++|+++|++|++||||||||+|||+||.|||.+++.||||+|||+|||+|++|++.++|++|+.+|+++|.++
T Consensus 161 aiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~p~PFlRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~v 240 (551)
T KOG4163|consen 161 AIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATPEEAEEEVLQILDLYARV 240 (551)
T ss_pred eeccCccceecHHHHHHHHhhccCchhhhhhhhheeeeccCCCcchhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcceEeeCCCCcCcc------------------------------cH----------------------------
Q 015587 161 YEEFLAVPVIKGKKSELENS------------------------------KF---------------------------- 182 (404)
Q Consensus 161 ~~~l~~ipv~~g~~~~~ekf------------------------------~F---------------------------- 182 (404)
|.+++++||+.|.|++.|+| ||
T Consensus 241 y~ellAiPVvkGrKse~EkFaGgd~TttvEa~i~~~GrgiQgaTSH~LGQNFSkmF~i~~ed~~~g~~~fv~QnSWg~sT 320 (551)
T KOG4163|consen 241 YEELLAIPVVKGRKSEKEKFAGGDYTTTVEAFIPCSGRGIQGATSHHLGQNFSKMFEIVFEDPGEGEKEFVWQNSWGLST 320 (551)
T ss_pred HHhhhccccccCccchhhhccCCcceEEEeeeeccccccccccchhhhhHHHHHhhceeecCCCccchhheeeccccccc
Confidence 99999999999999999998 34
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCC----ChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHH
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDA----DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSH 258 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~----~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ 258 (404)
|.||+|+|+||||+||+|||++||+||+|||++-++. +.+.+.++|..+.++|..+|||++.|+|+++++||||++
T Consensus 321 RtiGvmiM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~~~L~~~giR~~~D~rDnytpGwKfnh 400 (551)
T KOG4163|consen 321 RTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVESRLLGAGIRAEADLRDNYTPGWKFNH 400 (551)
T ss_pred ceeeEEEEEecCCcccccCCcccceEEEEEeccccccCchHHHHHHHHHHHHHHHHHhccCceEeecccccCCCCccccc
Confidence 9999999999999999999999999999999986543 246788999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHh
Q 015587 259 WEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEAL 338 (404)
Q Consensus 259 ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~ 338 (404)
|+++|||+||+|||+|+++++|++.+||+++|.+|++++|+..|+++|++||.+||++|++.+++|++.|++|+||+++|
T Consensus 401 wElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~~v~~~~l~~~v~elLe~iq~~m~~kA~~~rds~~~~v~~~~eF~~aL 480 (551)
T KOG4163|consen 401 WELKGVPLRIEIGPRDLASNQVVAVRRDTGEKKDVSLGDLEKTVKELLEKIQTNLYEKAKEKRDSHIVKVNTWEEFVKAL 480 (551)
T ss_pred eeecCceeEEEeccchhhhCeEEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeeeHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecCCChhHHHHHHHhhcCC-------cCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 339 GQRKMILAPWCDEEEVEKDVKARTKGE-------MGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 339 ~~~~~~~~pwc~~~~~e~~ik~~~~~~-------~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
++|+++++||||+.+||++||+.+++. +|||++|||||+|+. .+.+|++||++|+.|+||||||
T Consensus 481 ~~k~iilaPwcg~~ecE~~IK~~s~r~e~ge~apsmGAKtlCiPf~qpe--~~~kcl~cg~~ak~~~lfGRSY 551 (551)
T KOG4163|consen 481 DQKKIILAPWCGEIECEKDIKKRTARDEDGEEAPSMGAKTLCIPFEQPE--LGEKCLCCGKPAKKYTLFGRSY 551 (551)
T ss_pred ccCCEEEccccCcHHHHHHHHhhhccccCCCCcccCCceeeeecCCCCC--CccceeccCCccceEEEecccC
Confidence 999999999999999999999999763 689999999999995 4568999999999999999999
No 2
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1e-97 Score=768.11 Aligned_cols=394 Identities=49% Similarity=0.926 Sum_probs=371.2
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+|+++++|+++|+|.|+++|++|++++++.++++||++|+||+|+|.++|.+++||+++|.++||+|++.|+.++++++
T Consensus 27 l~d~~~v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l 106 (477)
T PRK08661 27 LADYSPVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKL 106 (477)
T ss_pred CcccCCCCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceE
Confidence 57888899999999999999999999999999999999999999999999988899999999999999999887788999
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+||||+|++++.+|++|++||+|||+|+|||++|||||.+ ++||+|+|||+|+|+|++|++.++|++|+..++++|.++
T Consensus 107 ~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i 185 (477)
T PRK08661 107 ALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEF 185 (477)
T ss_pred EEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 889999999999999999999999999999999999999
Q ss_pred HHHhCCcceEeeCCCCcCcc-----------------------------cH---------------------------HH
Q 015587 161 YEEFLAVPVIKGKKSELENS-----------------------------KF---------------------------VQ 184 (404)
Q Consensus 161 ~~~l~~ipv~~g~~~~~ekf-----------------------------~F---------------------------Rl 184 (404)
|++.+++|+.+|.++++++| +| |+
T Consensus 186 ~~~~Lglp~~~~~~~~~ekf~ga~~~~~ie~~~~dgr~~q~gt~~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~G~~~R~ 265 (477)
T PRK08661 186 FEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPDGKALQAGTSHYLGQNFAKAFDIKFQDKDGKLEYVHQTSWGVSTRL 265 (477)
T ss_pred HHHhcCCeEEEEecChHHhhCCCcceeEEEEEeCCCCEEEEEEecccccchhHhcCCEEECCCCCEeeeEEecccHHHHH
Confidence 94444699999988766665 11 99
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCC
Q 015587 185 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGV 264 (404)
Q Consensus 185 i~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~Gv 264 (404)
|++|+|+|+|++|++||+++||+||+|+|+..++.+.+++.++|.+|++.|+++|+||++|+|.+.++|+||++|+++|+
T Consensus 266 i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~gkK~~~ae~~Gv 345 (477)
T PRK08661 266 IGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKFNEWELKGV 345 (477)
T ss_pred HHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCC
Confidence 99999999999999999999999999999954322236788999999999999999999999545799999999999999
Q ss_pred CEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHh-cCCCE
Q 015587 265 PLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEAL-GQRKM 343 (404)
Q Consensus 265 P~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~-~~~~~ 343 (404)
|++|+||++|+++|+|+|++|+++++..++++++++.+.+++++||++||++|+++++++|+.++|||||+++| ++||+
T Consensus 346 P~~IiIG~~ele~~~V~ik~rdtgek~~v~~~el~~~l~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (477)
T PRK08661 346 PLRIEIGPRDLENNTVVLVRRDTLEKETVPLDELVEKVPELLEEIQENLYEKAKEFLEENTVEVDTLEEFKEAIEEKGGF 425 (477)
T ss_pred CEEEEECcchhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEcCCHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 77899
Q ss_pred EEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 344 ILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 344 ~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
|++||||+.+||++||++| ||++|||||+++ . .+|++||+||+.|++|||||
T Consensus 426 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~~~---~-~~c~~~~~~~~~~~~~~~~y 477 (477)
T PRK08661 426 VKAPWCGDEECEEKIKEET-----GATIRCIPLEQE---K-GKCIVCGKPAKKRVLFAKAY 477 (477)
T ss_pred EEEEecCCHHHHHHHHHHh-----CCEEEeEEcCCC---C-CcccccCCccceEEEEEEEC
Confidence 9999999999999999999 999999999886 2 36999999999999999999
No 3
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=1e-96 Score=759.19 Aligned_cols=395 Identities=43% Similarity=0.842 Sum_probs=369.8
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+++++++|+++|+|.|+++|++|++++++.++++||++|+||+|++.++|.++++|+++|.++||+|++.|++++++++
T Consensus 21 li~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l 100 (472)
T TIGR00408 21 IIDYYPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPL 100 (472)
T ss_pred CccccCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcE
Confidence 57888999999999999999999999999999999999999999999999988888999999999999999988888999
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+||||+|++++.+|++|++||++||+|+|||++|||||.++++||+|+|||+|+|+|++|++.++|..|+..++++|.++
T Consensus 101 ~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i 180 (472)
T TIGR00408 101 ALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEF 180 (472)
T ss_pred EEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHhCCcceEeeCCCCcCcc-----------------------------cH---------------------------HH
Q 015587 161 YEEFLAVPVIKGKKSELENS-----------------------------KF---------------------------VQ 184 (404)
Q Consensus 161 ~~~l~~ipv~~g~~~~~ekf-----------------------------~F---------------------------Rl 184 (404)
|++.+++|+..+.++++++| +| |+
T Consensus 181 ~~~~lglp~~~~~~~~~ek~~ga~~~~~~e~~~~dgr~~q~~t~~~Lg~~~sk~f~i~y~~~~g~~~~~h~~s~Gi~eRl 260 (472)
T TIGR00408 181 IENSLAIPYFVGRKPEWEKFAGAEYTWAFETIMPDGRTLQIATSHNLGQNFAKTFEIKFETPTGDKEYAYQTSYGISTRV 260 (472)
T ss_pred HHhccCCeEEEEecCchhhcCCccceEEEeEEEcCCCEEEEeeeecccccccHhcCCEEECCCCCEEeeEEccccHHHHH
Confidence 98333589988877765654 11 99
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCC
Q 015587 185 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGV 264 (404)
Q Consensus 185 i~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~Gv 264 (404)
|++|+|+|+|+.|++||+++||+||+|+|+..++.+.++..++|.+|++.||++|++|++|+++. ++|+||++|+++|+
T Consensus 261 i~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r~~-s~gkk~k~Ae~~Gv 339 (472)
T TIGR00408 261 IGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDN-RPGRKFYQWEIKGI 339 (472)
T ss_pred HHHHHHHhCCCCceeeChhhCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHCCC
Confidence 99999999999999999999999999999821111125688999999999999999999999984 99999999999999
Q ss_pred CEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhcCC-CE
Q 015587 265 PLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQR-KM 343 (404)
Q Consensus 265 P~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~-~~ 343 (404)
|++|+||++|+++|+|+|++|++++|..++++++++.+.++++++|++||+||++++++||+.++|||||+++++++ |+
T Consensus 340 P~~IiIG~~Ele~~~V~ik~rdt~eq~~v~l~el~~~l~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (472)
T TIGR00408 340 PLRIEVGPNDIEKNIAVISRRDTGEKYQVSLDQLEERVVELLNNIQENLRNRAWERFEQKIVIVETLEEIKQALNEKRGV 419 (472)
T ss_pred CEEEEECcchhhCCeEEEEECCCCceEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEcCCHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999764 69
Q ss_pred EEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 344 ILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 344 ~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
|++||||+.+||++||++| |||+||||++++. +++|++||+||+.|++|||||
T Consensus 420 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~c~~~~~~~~~~~~~~~~y 472 (472)
T TIGR00408 420 VLVPWCGEEECEEDLKEKV-----QVTILCIPEDGDV---LQLCIFCGRKAPDYVLIARTY 472 (472)
T ss_pred EEEEecCCHHHHHHHHHHh-----CCeEeEEECCCCC---CCccCccCCcccEEEEEEEeC
Confidence 9999999999999999999 9999999998872 357999999999999999999
No 4
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-77 Score=604.92 Aligned_cols=394 Identities=31% Similarity=0.509 Sum_probs=348.6
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+++ +++|+|.|+|.|+++|++|++++|+.+++.|++|+.+|+|+|.+|| +|+|||++|++||||++|+|+ +++
T Consensus 31 ~i~~-~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLw-kEs~r~~~f~~El~~v~drg~----~~l 104 (500)
T COG0442 31 MIRK-PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELW-KESGRWEGFGPELFRVKDRGD----RPL 104 (500)
T ss_pred ceec-ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHH-HHhChhhhcchhhEEEEccCC----cee
Confidence 4556 9999999999999999999999999999999999999999997776 899999999999999999997 999
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+||||||+.|+.++++|++||+|||+++|||+++||||.||++||||.|||+|+|+|+||++.++|++++..+.++|.+|
T Consensus 105 ~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~i 184 (500)
T COG0442 105 ALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRI 184 (500)
T ss_pred eeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcceEeeCCCCcCcc-----------------------------cH-----------------------------
Q 015587 161 YEEFLAVPVIKGKKSELENS-----------------------------KF----------------------------- 182 (404)
Q Consensus 161 ~~~l~~ipv~~g~~~~~ekf-----------------------------~F----------------------------- 182 (404)
|.. +|+..+.++++++| ||
T Consensus 185 f~~---i~l~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~~v~t~s~~~s~ 261 (500)
T COG0442 185 FLR---LPLIFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEGELEYVHTTSYGIST 261 (500)
T ss_pred HHh---CCceEEeecccCCCCCCccceEEEEEccCCCccEEEEecchHHhHHHhccCCCccccccccceEecccceEEEe
Confidence 954 45444444433333 22
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCC-hhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHH
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDAD-TQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEM 261 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~-~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~ 261 (404)
|.+++++++||||.|+++||.+||.||+++|+..++.+ ......++..++..|...+++++.|+++..++|+|++.|+.
T Consensus 262 r~~~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ 341 (500)
T COG0442 262 RIIGAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEG 341 (500)
T ss_pred eeeeEEEEEecCCCCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCceeeeeec
Confidence 88999999999999999999999999999998755321 22367889999999999999999997654699999999999
Q ss_pred cCCCEEEEECccccCCCeEEEEECCCCc--eeeechhhHHHH-HHHHHHHHH--HHHHHH-HHHHHHcCeeeccCHHHHH
Q 015587 262 KGVPLRIEIGPKDLANDQVRAVRRDNGA--KIDLPRGSLVER-VKELLEEVQ--ESLFVA-AKQRRDACIQIVKTWDEFV 335 (404)
Q Consensus 262 ~GvP~~iiIG~~E~~~~~V~v~~r~~~~--k~~v~~~el~~~-i~~~l~~~~--~~l~~~-a~~~~~~~~~~~~~~~e~~ 335 (404)
+|||.++.+|+++.++.++++.+|++.+ +..++...+++. +.++++.+| +.|+.+ |.+.++.+|+.+++- |++
T Consensus 342 ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~-~~~ 420 (500)
T COG0442 342 IEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTK-DFK 420 (500)
T ss_pred cccCEEEEECchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHHhcccccCccccccCcceeEEEEcCch-hHH
Confidence 9999999999999999999999999998 889999999999 999999999 999999 999999999999988 555
Q ss_pred HHhc-CCCEEEeecCCChhHHHHHHHhhcC-CcCCCeeecccCCCCC---CCCCC---cccccCCCcce--EEEEeecC
Q 015587 336 EALG-QRKMILAPWCDEEEVEKDVKARTKG-EMGAAKTLCSPLEQPE---VPEGT---LCFASGKPAKK--WTYWGRSY 404 (404)
Q Consensus 336 ~~~~-~~~~~~~pwc~~~~~e~~ik~~~~~-~~~~~~~~c~p~~~~~---~~~~~---~C~~~~~~a~~--~~~~~rsY 404 (404)
..+. +++++.+||||+.+|+.+++++-.+ +..+|+++|||++... ..+|. +|..||..+.. +++|+|+|
T Consensus 421 ~~~~~~~~~~~l~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~~~~g~~e~k~r~~ge~~~~~~~~l~~~~~ 499 (500)
T COG0442 421 QAEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKRLAEGEVEVKCRKCGEKEAVTIEALFARLY 499 (500)
T ss_pred HHHHhhhHHHHHHhCCchhhhhhhhccccCccccCCeEecccceeeecccccCCceeEEecCCCchhhccHHHHHHHhh
Confidence 5554 4569999999999999999933321 1239999999998652 22343 79999977776 89999987
No 5
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.5e-59 Score=477.68 Aligned_cols=289 Identities=21% Similarity=0.363 Sum_probs=262.3
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
.++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++| +++|||+.|.++||+++|.++ ++++||||
T Consensus 35 ~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~-~~sg~~~~~~~emf~~~d~~~----~~~~L~Pt 109 (439)
T PRK12325 35 QAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLW-RESGRYDAYGKEMLRIKDRHD----REMLYGPT 109 (439)
T ss_pred cCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHH-hhcCCccccchhheEEecCCC----CEEEEcCC
Confidence 4899999999999999999999999999999999999999999999 568999999999999999877 89999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
+|+.++.++++++.||++||+|+|||++|||||.+|+.||+|+|||+|+|+|+|+++.+++..++..++++|.++|+.||
T Consensus 110 ~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~lg 189 (439)
T PRK12325 110 NEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARLG 189 (439)
T ss_pred CcHHHHHHHHHHhhhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999987
Q ss_pred C--cceEe-----e-CC-------------C---------------------------------C---------------
Q 015587 166 A--VPVIK-----G-KK-------------S---------------------------------E--------------- 176 (404)
Q Consensus 166 ~--ipv~~-----g-~~-------------~---------------------------------~--------------- 176 (404)
. +++.. | .. + .
T Consensus 190 l~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 269 (439)
T PRK12325 190 LKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDVADLQPIVDEWTSLYAATEEMHDEAAFAA 269 (439)
T ss_pred CceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCHHHHHHHHhhhcccccchhhhhccCCCCc
Confidence 3 22221 1 00 0 0
Q ss_pred --c-----C-------cc--------cH------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEE
Q 015587 177 --L-----E-------NS--------KF------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVI 210 (404)
Q Consensus 177 --~-----e-------kf--------~F------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~ 210 (404)
. . .| .| |+|++|+++|+|+.|++||+++||+||+
T Consensus 270 ~~~~~~~~~~~ievg~~~~lg~~ys~~f~~~y~d~~g~~~~i~~~~~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV~ 349 (439)
T PRK12325 270 VPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGPDGKEVPVHMGSYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVG 349 (439)
T ss_pred CCCcceeecceEEEEeeecCcccccHhcCCEEECCCCCEEeEEEeeeECCHHHHHHHHHHHhCccCCCcCCCCcCCeEEE
Confidence 0 0 01 01 9999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCce
Q 015587 211 VIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAK 290 (404)
Q Consensus 211 Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k 290 (404)
|+|+..++ ++..++|.+|++.|+++|++|++|+++ .++|+||++|+++|+|++|+||++|+++|+|+|++|+++++
T Consensus 350 Iipi~~~~---~~~~~~a~~i~~~L~~~Gi~v~~D~~~-~~lg~ki~~a~~~giP~~iiVG~~e~~~~~V~vr~r~~~~~ 425 (439)
T PRK12325 350 IINLKQGD---EACDAACEKLYAALSAAGIDVLYDDTD-ERPGAKFATMDLIGLPWQIIVGPKGLAEGKVELKDRKTGER 425 (439)
T ss_pred EEecCCCC---HHHHHHHHHHHHHHHHCCCEEEEECCC-CCHhHHHHHHHHcCCCEEEEECCcccccCeEEEEEcCCCce
Confidence 99995332 568899999999999999999999997 59999999999999999999999999999999999999999
Q ss_pred eeechhhHHHHHH
Q 015587 291 IDLPRGSLVERVK 303 (404)
Q Consensus 291 ~~v~~~el~~~i~ 303 (404)
..++++++++.+.
T Consensus 426 ~~v~~~el~~~i~ 438 (439)
T PRK12325 426 EELSVEAAINRLT 438 (439)
T ss_pred EEEEHHHHHHHHh
Confidence 9999999887653
No 6
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.1e-58 Score=483.46 Aligned_cols=289 Identities=24% Similarity=0.387 Sum_probs=263.5
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
+.++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++| +++|||++|.+|||+|+|+++ ++++|||
T Consensus 34 ~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~-~~sg~~~~~~~emf~~~d~~~----~~l~LrP 108 (565)
T PRK09194 34 KLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELW-QESGRWEEYGPELLRLKDRHG----RDFVLGP 108 (565)
T ss_pred ccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHH-hhcCCccccchhceEEecCCC----CEEEECC
Confidence 35699999999999999999999999999999999999999999999 568999999999999999887 8999999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
|+|+.++.++++++.||++||+|+|||+++||||.+|++||+|+|||+|.|+|+||.+.++|++++..++++|.++|+.|
T Consensus 109 t~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 109 THEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred CChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CCcceEee-------------------------------------------C---C-CC-------------c-------
Q 015587 165 LAVPVIKG-------------------------------------------K---K-SE-------------L------- 177 (404)
Q Consensus 165 ~~ipv~~g-------------------------------------------~---~-~~-------------~------- 177 (404)
| +|+.+. . . +. .
T Consensus 189 g-l~~~~~~~~~g~~gg~~s~e~~~~~~~g~~~~~~c~~c~~~~n~e~a~~~~~~~~~~~~~~~~v~~p~~~t~~e~a~~ 267 (565)
T PRK09194 189 G-LDFRAVEADSGAIGGSASHEFMVLADSGEDTIVYSDESDYAANIEKAEALPPPRAAAEEALEKVDTPNAKTIEELAEF 267 (565)
T ss_pred C-CccEEEEcccccCCCceeEEEEEecCCCceEEEEeCCCCcchhhhhhcccCCCCccccccceeecCCCCCcHHHHHHH
Confidence 7 454211 0 0 00 0
Q ss_pred ------------------------------------------Cc------------------------------------
Q 015587 178 ------------------------------------------EN------------------------------------ 179 (404)
Q Consensus 178 ------------------------------------------ek------------------------------------ 179 (404)
.+
T Consensus 268 lg~~~~~~~KtLi~~~~~~~~lvvvp~d~~vn~~kl~~~lg~~~l~~a~~eel~~~~g~~~G~v~P~Gl~~~v~viiD~s 347 (565)
T PRK09194 268 LNVPAEKTVKTLLVKADGELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIRAALGAVPGFLGPVGLPKDVPIIADRS 347 (565)
T ss_pred hCCCHHHeeEEEEEEeCCeEEEEEeecchhhhHHHHHhhcCCcccccCCHHHHHHhhCCCCCccCcccCCCCceEEEecc
Confidence 00
Q ss_pred --------------------------c----------------------------------------cH-----------
Q 015587 180 --------------------------S----------------------------------------KF----------- 182 (404)
Q Consensus 180 --------------------------f----------------------------------------~F----------- 182 (404)
| +|
T Consensus 348 l~~~~~~~~gan~~g~h~~~~~~~~d~~~~~~~d~~~~~~g~~c~~c~~~l~~~~~iEvGh~f~lG~~ys~~~~~~~~~~ 427 (565)
T PRK09194 348 VADMSNFVVGANEDDYHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIEVGHIFQLGTKYSEAMNATVLDE 427 (565)
T ss_pred ccccccccccCCCCCceeeCCccCcCCCcccccchhhhhcCCCCCCCCceeEEeeeEEEEEEecCCcchhhccCCEEECC
Confidence 0 00
Q ss_pred -----------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEe
Q 015587 183 -----------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSD 245 (404)
Q Consensus 183 -----------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D 245 (404)
|+|++|+|+|+|++|++||+++||+||+|+|+..++ ++..++|.+|++.|+++|++|.+|
T Consensus 428 ~g~~~~~~m~~~gIGv~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~---~~~~~~a~~i~~~L~~~gi~v~~D 504 (565)
T PRK09194 428 NGKAQPLIMGCYGIGVSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKD---EEVKELAEKLYAELQAAGIEVLLD 504 (565)
T ss_pred CCCEEeEEEeeEechHHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCc---HHHHHHHHHHHHHHhccCCeEEEE
Confidence 999999999999999999999999999999997432 468899999999999999999999
Q ss_pred CCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHH
Q 015587 246 FRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303 (404)
Q Consensus 246 ~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~ 303 (404)
+++ .++|+||++|+++|+|++|+||++|+++|+|+|++|++|+|..|+++++.+.|.
T Consensus 505 dr~-~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~ge~~~v~~~~l~~~i~ 561 (565)
T PRK09194 505 DRK-ERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDELVEFLK 561 (565)
T ss_pred CCC-CCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 997 699999999999999999999999999999999999999999999999887774
No 7
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=3.2e-57 Score=474.18 Aligned_cols=290 Identities=21% Similarity=0.361 Sum_probs=263.5
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+++|++|++++++.+.++||++|.||+|+|.++| +++|||+.|.+|||+|+|+++ ++++|||
T Consensus 34 ~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~-~~sg~~~~~~~emf~~~dr~~----~~l~LrP 108 (568)
T TIGR00409 34 RLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELW-QESGRWDTYGPELLRLKDRKG----REFVLGP 108 (568)
T ss_pred ccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHH-hhcCCCCccchhcEEEecCCC----CEEEEcC
Confidence 45799999999999999999999999999999999999999999999 568999999999999999887 8999999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
|+|+.++.++++++.||++||+|+|||+++||+|.+|+.||+|+|||+|.|+|+||.+.+++++|+..++++|.++|++|
T Consensus 109 T~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 109 THEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred CCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEee-------------------------------------------C---CC-----------------------
Q 015587 165 LAVPVIKG-------------------------------------------K---KS----------------------- 175 (404)
Q Consensus 165 ~~ipv~~g-------------------------------------------~---~~----------------------- 175 (404)
| +|+.+. . ..
T Consensus 189 g-L~~~~v~~~~g~~gg~~s~ef~~~~~~ge~~i~~c~~~~y~an~e~a~~~~~~~~~~~~~~~~~~~tp~~~ti~~~~~ 267 (568)
T TIGR00409 189 G-LDFRPVQADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANIELAEALAPGERNAPTAELDKVDTPNTKTIAELVE 267 (568)
T ss_pred C-CcceEEEeccccCCCccceEEeEecCCCceEEEEecCcccchhhhhhcccCccccccccccceeecCCCCCcHHHHHH
Confidence 7 343110 0 00
Q ss_pred ------------------C--------------------------c-C--------------------------------
Q 015587 176 ------------------E--------------------------L-E-------------------------------- 178 (404)
Q Consensus 176 ------------------~--------------------------~-e-------------------------------- 178 (404)
. . .
T Consensus 268 ~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~~~~~~a~~~~~~~~~g~~~g~~gpv~~~~~~~i 347 (568)
T TIGR00409 268 CFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVAQVLELATEEEIFQKIASGPGSLGPVNINGGIPV 347 (568)
T ss_pred HhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccCcccccCCHHHHHHhhCCCCCccCccccccCceE
Confidence 0 0 0
Q ss_pred ----------cc------------------c------------------------------------H------------
Q 015587 179 ----------NS------------------K------------------------------------F------------ 182 (404)
Q Consensus 179 ----------kf------------------~------------------------------------F------------ 182 (404)
.| + |
T Consensus 348 ~~D~~~~~~~~~~~gan~~~~h~~~~~~~rd~~~~~~~d~~~~~eGd~cp~c~~~l~~~rgIEvGhiF~LG~kYS~~~~~ 427 (568)
T TIGR00409 348 LIDQTVALMSDFAAGANADDKHYFNVNWDRDVAIPEVADIRKVKEGDPSPDGQGTLKIARGIEVGHIFQLGTKYSEALKA 427 (568)
T ss_pred EechhhhcccccccccCCCCceeecccccccCCccccchhhhhhccCCCCCCCCcccccceEEEEEeccchhhhHHhcCC
Confidence 00 0 0
Q ss_pred ----------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCC
Q 015587 183 ----------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGI 240 (404)
Q Consensus 183 ----------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Gi 240 (404)
|+|++++|+|+|++|++||+++||+||+|+|+..++ ++..++|.+|++.|+++|+
T Consensus 428 ~~~d~~g~~~~~~mgcyGIGvsRli~aiie~~~D~~Gl~wP~~iAP~qV~Iip~~~~~---~~~~~~a~~l~~~L~~~gi 504 (568)
T TIGR00409 428 TFLDENGKNQFMTMGCYGIGVSRLVSAIAEQHHDERGIIWPKAIAPYDVVIVVMNMKD---EEQQQLAEELYSELLAQGV 504 (568)
T ss_pred EEECCCCCEEEEEEeCCcchHHHHHHHHHHHhCccCCCcCChhhCCeEEEEEEcCCCh---HHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999997542 4688999999999999999
Q ss_pred EEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHH
Q 015587 241 RANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304 (404)
Q Consensus 241 rv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~ 304 (404)
+|.+|+|+ .++|+||++|+++|+|++|+||++++++|+|+|++|+++++..|+++++++.|.+
T Consensus 505 ~v~~DDr~-~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~R~~~~~~~v~~~~l~~~i~~ 567 (568)
T TIGR00409 505 DVLLDDRN-ERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNGEKQLIKKDELVECLEE 567 (568)
T ss_pred EEEEECCC-CCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEEcCCCceEEEEHHHHHHHHhh
Confidence 99999998 5999999999999999999999999999999999999999999999999887753
No 8
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=100.00 E-value=2.9e-56 Score=411.39 Aligned_cols=202 Identities=50% Similarity=0.952 Sum_probs=188.9
Q ss_pred CCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccC
Q 015587 197 GLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLA 276 (404)
Q Consensus 197 Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~ 276 (404)
||+|||++||+||+|+|++.++.+.+++.+++.+|++.|+++|+||++|++++.++|+||++|+++|+|++|+||++|++
T Consensus 1 GLvlP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~Ele 80 (202)
T cd00862 1 GLVLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLE 80 (202)
T ss_pred CCcCChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcchhh
Confidence 89999999999999999975432335588999999999999999999999984599999999999999999999999999
Q ss_pred CCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhcCCCEEEeecCCChhHHH
Q 015587 277 NDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEK 356 (404)
Q Consensus 277 ~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~pwc~~~~~e~ 356 (404)
+|+|+|++|+++++..++++++++.+.++|++||++||++|++++++ |+.++|||||+++|++||||++||||+.+||+
T Consensus 81 ~g~V~v~~Rd~~ek~~v~~~el~~~i~~ll~~i~~~l~~~A~~~~~~-~~~~~~~~e~~~~~~~~~~v~~~wcg~~~~e~ 159 (202)
T cd00862 81 KNTVVIVRRDTGEKKTVPLAELVEKVPELLDEIQEDLYERALEFRDA-TRIVDTWEEFKEALNEKGIVLAPWCGEEECEE 159 (202)
T ss_pred CCEEEEEEecCCcceEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-eEeeCCHHHHHHHHhcCCEEEEEecCCHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999989999999999999999
Q ss_pred HHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 357 DVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 357 ~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
+||++| +||+||||++++....+.+|++||+||+.|++|||||
T Consensus 160 ~ik~~~-----~a~~~~ip~~~~~~~~~~~C~~~g~~a~~~~~~arsY 202 (202)
T cd00862 160 EIKEET-----AATILCIPFDEAKLEEGGKCVVCGRPAKAYARFAKSY 202 (202)
T ss_pred HHHHhh-----CCeEeeeecCCcCCCCCCccCCcCCchheEEEEEEeC
Confidence 999999 9999999998762223457999999999999999999
No 9
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-53 Score=442.64 Aligned_cols=286 Identities=18% Similarity=0.294 Sum_probs=254.2
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+.+|+.|++++++.+.++||++|.||++...++|. .|||++.|.++||++ +.++ ++++|||
T Consensus 155 ~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k-~SGh~~~y~~~mf~~-~~~~----e~~~LrP 228 (545)
T PRK14799 155 EAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWK-ISGHYTLYRDKLIVF-NMEG----DEYGVKP 228 (545)
T ss_pred ccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHh-hccccccchhhccee-eccC----ceEEecc
Confidence 458999999999999999999999999999999999999999999995 599999999999999 5566 8999999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCC-CCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~-~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+|++++.+|+++.+|||+||+|+||||+|||||.++. .||+|+|||+|+|+|+ +++++++.+|+..++++..++|+.
T Consensus 229 m~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~vy~~ 307 (545)
T PRK14799 229 MNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISKTVEVWHK 307 (545)
T ss_pred CCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998763 5999999999999999 788899999999999999999999
Q ss_pred hCC----cceEeeCCC--------CcCcc------------------------------------------------c--
Q 015587 164 FLA----VPVIKGKKS--------ELENS------------------------------------------------K-- 181 (404)
Q Consensus 164 l~~----ipv~~g~~~--------~~ekf------------------------------------------------~-- 181 (404)
+|. +++.++.++ .|+++ +
T Consensus 308 fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~~g~gafygpkiD~~v~dalgr~~q~~Tiqldf~ 387 (545)
T PRK14799 308 FGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVDFN 387 (545)
T ss_pred hCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEecceeccccCccceEehhhcCchhhhhhhhhhcC
Confidence 985 333333221 11111 0
Q ss_pred ----H--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHH
Q 015587 182 ----F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTAT 231 (404)
Q Consensus 182 ----F--------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i 231 (404)
| |++++|++++ .| .||+|++|.||+|+|++ ++..++|.+|
T Consensus 388 lp~rf~Ley~~~~~~~~~pv~ihr~~~GgiERli~iL~e~~---~G-~~P~wlaP~qV~Iipi~------e~~~~~A~~I 457 (545)
T PRK14799 388 LPERFKLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHF---KG-KLPTWLSSVQVRVLPIT------DEVNEYAEKV 457 (545)
T ss_pred cccccceEEEcCCCCCcccEEEEccCCCCHHHHHHHHHHHc---CC-CCCCCCCCceEEEEEcC------HHHHHHHHHH
Confidence 1 9999888764 23 69999999999999996 4678999999
Q ss_pred HHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 232 VEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 232 ~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
++.||++|++|++|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|+++++..++++++++.+.+.+.+
T Consensus 458 a~~LR~~GirVelD~~~-~~lgkkir~A~k~gip~viIIG~~E~e~~~VtVR~r~~~eq~~v~l~eli~~l~~~i~~ 533 (545)
T PRK14799 458 LNDMRKRRIRAEIDYAG-ETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARGNIEVRNVKFEKFLELLITEIAQ 533 (545)
T ss_pred HHHHHhCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEEChhHhhcCeEEEEECCCCceEEEcHHHHHHHHHHHHhh
Confidence 99999999999999987 69999999999999999999999999999999999999999999999998877766654
No 10
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=2e-53 Score=447.73 Aligned_cols=293 Identities=20% Similarity=0.247 Sum_probs=262.9
Q ss_pred CCccCC--CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCC
Q 015587 1 MIEYYD--ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEV 78 (404)
Q Consensus 1 ~~~~~~--~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~ 78 (404)
|+++.+ .+|++.|+|.|+.+++.|++++++.+.++||++|.||.+...++| +.+||+++|.++||++++. + +
T Consensus 208 L~d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~-~~sgh~~~f~e~my~v~~~-~----e 281 (613)
T PRK03991 208 LADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHP-AIREHADKFGERQYRVKSD-K----K 281 (613)
T ss_pred CcccccccCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHH-hhcccccccchhceEecCC-C----c
Confidence 456655 689999999999999999999999999999999999999999999 5799999999999999643 3 7
Q ss_pred ceeccCCChhHHHHHHHhhhccCCCCCeEEEeeec-eeecCCCCC-CCccccceeEEeceeeecCChhhHHHHHHHHHHH
Q 015587 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCN-VVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDEVLQILEL 156 (404)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~-vfR~E~~~~-~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~ 156 (404)
+++||||+|++++.+|++|+.||++||+|++|+++ +||+|.++. +||+|+|||+|.|+|+|+.+.++|.+|+..++++
T Consensus 282 ~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~ 361 (613)
T PRK03991 282 DLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEM 361 (613)
T ss_pred eEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999 999999875 6999999999999999877789999999999999
Q ss_pred HHHHHHHhCCcceEeeCCC----------------------------CcCc-c---------------------------
Q 015587 157 YRRIYEEFLAVPVIKGKKS----------------------------ELEN-S--------------------------- 180 (404)
Q Consensus 157 y~~~~~~l~~ipv~~g~~~----------------------------~~ek-f--------------------------- 180 (404)
+.++|+.|| +|+..-..+ +.+. |
T Consensus 362 ~~~i~~~lG-l~~~~~~~~t~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d~~gr~~q~~T~qld~~ 440 (613)
T PRK03991 362 ILETGEDLG-RDYEVAIRFTEDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFIDSLGRPIENPTVQIDVE 440 (613)
T ss_pred HHHHHHHcC-CCeEEEecCHHHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeCCCCCEEEEeeeecCcc
Confidence 999999887 453211000 0000 0
Q ss_pred ---cH--------------------------HHHHHHHHHcCCC----CCCCCCCCCCCceEEEEEecCCCCChhhHHHH
Q 015587 181 ---KF--------------------------VQIGVMVMVHGDD----KGLMLPPKVASVQVIVIPVPYKDADTQGIFDA 227 (404)
Q Consensus 181 ---~F--------------------------Rli~~Lie~~~d~----~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~ 227 (404)
.| |+|++|+|+|+|+ +|++||+|+||+||+|+|++ ++..++
T Consensus 441 ~~~~f~l~y~d~~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~------e~~~~~ 514 (613)
T PRK03991 441 NAERFGIKYVDENGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVS------ERHLDY 514 (613)
T ss_pred cchhCCCEEECCCCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeC------HHHHHH
Confidence 01 9999999999998 89999999999999999996 467899
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 228 CTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 228 a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
|.+|++.||++|++|++|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|+++++..++++++++.+.++++
T Consensus 515 A~eIa~~Lr~~GirV~lDdr~-~slgkKir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~eq~~v~l~eli~~l~~~~~ 593 (613)
T PRK03991 515 AEEVADKLEAAGIRVDVDDRD-ESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEELIERIKEETK 593 (613)
T ss_pred HHHHHHHHHhCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHh
Confidence 999999999999999999997 5999999999999999999999999999999999999999999999999888887765
No 11
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.9e-52 Score=444.49 Aligned_cols=285 Identities=22% Similarity=0.360 Sum_probs=254.9
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+.+|+.|++++++.+.++||++|.||+|++.++|.+ +||++.|.++|| +.|.++ +.++|||
T Consensus 261 ~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~-sG~~~~~~~emy-~~d~~~----~~~~LrP 334 (639)
T PRK12444 261 EEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWER-SGHWDHYKDNMY-FSEVDN----KSFALKP 334 (639)
T ss_pred cccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCChhhhhhhcC-eecCCC----cEEEEcc
Confidence 3589999999999999999999999999999999999999999999976 699999999999 777777 8999999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+|++++++|++++.||++||+|+||||+|||||.++ ++||+|+|||+|.|+|+ +++++++++|+..+++++.++|+.
T Consensus 335 ~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~-f~~~~~~~~e~~~~~~~~~~i~~~ 413 (639)
T PRK12444 335 MNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHL-FVTPDQIEDEIKSVMAQIDYVYKT 413 (639)
T ss_pred CCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEE-ECCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999765 55999999999999997 588788999999999999999999
Q ss_pred hCCcceEe--eCCC--------CcCc-----------------------------c-------------------c----
Q 015587 164 FLAVPVIK--GKKS--------ELEN-----------------------------S-------------------K---- 181 (404)
Q Consensus 164 l~~ipv~~--g~~~--------~~ek-----------------------------f-------------------~---- 181 (404)
|| +|+.+ +.++ .|++ | +
T Consensus 414 lg-l~~~~~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~~~~~~~t~~~d~~~~ 492 (639)
T PRK12444 414 FG-FEYEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRSHQCGTIQLDFQMP 492 (639)
T ss_pred cC-CcEEEEEECCccccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecCCCChhcccceeeecccc
Confidence 97 47654 2221 0000 0 0
Q ss_pred --H--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHH
Q 015587 182 --F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVE 233 (404)
Q Consensus 182 --F--------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~ 233 (404)
| |+|++|++.+ |+.||+|++|.||+|+|++. ++..++|.+|++
T Consensus 493 ~~f~l~~~~~~g~~~~P~i~~~~~~g~ieRli~~L~e~~----~~~~p~~~ap~qV~Ii~~~~-----~~~~~~a~~la~ 563 (639)
T PRK12444 493 EKFDLNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHF----GGAFPAWLAPVQVKVIPVSN-----AVHVQYADEVAD 563 (639)
T ss_pred cccceEEECCCCCccccEEEEECCCCCHHHHHHHHHHhc----CCCCCCccCCceEEEEEccc-----HHHHHHHHHHHH
Confidence 1 9999999975 67999999999999999872 147789999999
Q ss_pred HHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 234 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 234 ~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
.||++|++|++|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|++++|..++++++.+.+.+.++
T Consensus 564 ~LR~~Gi~veid~~~-~sl~kq~k~A~k~g~~~~iiiG~~E~~~~~v~vr~~~t~~q~~i~l~el~~~l~~~~~ 636 (639)
T PRK12444 564 KLAQAGIRVERDERD-EKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRKYGEEKSEVIELDMFVESIKEEIK 636 (639)
T ss_pred HHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEEcchhhhcCeEEEEECCCCceeeeeHHHHHHHHHHHhh
Confidence 999999999999987 6999999999999999999999999999999999999999999999999888766654
No 12
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=1.3e-51 Score=435.33 Aligned_cols=286 Identities=20% Similarity=0.287 Sum_probs=254.4
Q ss_pred CCccCC--CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCC
Q 015587 1 MIEYYD--ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEV 78 (404)
Q Consensus 1 ~~~~~~--~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~ 78 (404)
|+++.+ ++|+++|+|.|+.+|++|++++++.+.++||++|.||+|++.++|.+ +||++.|.+|||+|+|++| +
T Consensus 181 l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~emy~~~d~~~----~ 255 (563)
T TIGR00418 181 LFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEI-SGHWDNYKERMFPFTELDN----R 255 (563)
T ss_pred CcccCcccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHh-cCCcccchhhcceeccCCC----c
Confidence 345654 89999999999999999999999999999999999999999999966 7999999999999999887 8
Q ss_pred ceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHH
Q 015587 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 157 (404)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y 157 (404)
.++||||+|++++++|+++..||++||+|+||+|+|||||.++ .+||+|+|||+|.|+|+++. .+++++|+..+++++
T Consensus 256 ~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~~~e~~~~i~~~ 334 (563)
T TIGR00418 256 EFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQIKEEFKNQFRLI 334 (563)
T ss_pred eEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887 46999999999999999877 899999999999999
Q ss_pred HHHHHHhCCcc---eEeeCC-CC--------cC-----------------------------------------------
Q 015587 158 RRIYEEFLAVP---VIKGKK-SE--------LE----------------------------------------------- 178 (404)
Q Consensus 158 ~~~~~~l~~ip---v~~g~~-~~--------~e----------------------------------------------- 178 (404)
.++|+.|| +| +.++.+ ++ +.
T Consensus 335 ~~~~~~lg-l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~~f~~~~~lg~~~~~~t 413 (563)
T TIGR00418 335 QKVYSDFG-FSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKIDFAFKDALGREWQCAT 413 (563)
T ss_pred HHHHHHcC-CCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceEEEEeecCCCCceeece
Confidence 99999987 44 222211 00 00
Q ss_pred ---------cc-------------------cH-----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHH
Q 015587 179 ---------NS-------------------KF-----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIF 225 (404)
Q Consensus 179 ---------kf-------------------~F-----Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~ 225 (404)
+| .| |++++|++.+ |..||++++|.||+|+|++. +..
T Consensus 414 ~q~~~~~g~ryd~~~~~~~g~~~~p~ii~~Gfa~gieRli~~l~e~~----~~~~p~~~~p~~v~vi~~~~------~~~ 483 (563)
T TIGR00418 414 VQLDFELPERFDLTYVDEDNEEKRPVMIHRAILGSIERFIAILLEKY----AGNFPLWLAPVQVVVIPVNE------RHL 483 (563)
T ss_pred eeeccCCHhhcCCEEECCCCCEEeeEEEEeeccCcHHHHHHHHHHhc----cCCCCCcCCCceEEEEEccc------hHH
Confidence 00 01 9999998876 45789889999999999973 567
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHH
Q 015587 226 DACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304 (404)
Q Consensus 226 ~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~ 304 (404)
++|.+|++.||++|++|++|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|++|++..++++++++.+++
T Consensus 484 ~~a~~ia~~LR~~Gi~v~~d~~~-~sl~~q~k~A~~~g~~~~iiiG~~E~~~~~v~vk~~~~g~q~~v~~~el~~~i~~ 561 (563)
T TIGR00418 484 DYAKKVAQKLKKAGIRVDVDDRN-ERLGKKIREAQKQKIPYMLVVGDKEMESLAVNVRTRKGQKLEKMSLDEFLEKLRK 561 (563)
T ss_pred HHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEEchhhhhCCeEEEEECCCCccceeeHHHHHHHHHh
Confidence 89999999999999999999987 6999999999999999999999999999999999999999999999998776643
No 13
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=4.4e-51 Score=432.82 Aligned_cols=284 Identities=20% Similarity=0.307 Sum_probs=253.2
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
..+|++.|+|.|.++++.|++++++...+.||++|.||.|.+.++| +.||||+.|.++||.+.+..+ +.++||||
T Consensus 235 ~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~-~~sGh~~~~~~~mf~~~~~~~----~~y~l~p~ 309 (614)
T PLN02837 235 AGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLW-KTSGHLDFYKENMYDQMDIED----ELYQLRPM 309 (614)
T ss_pred cCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHH-hhcCCcccchhhcccccCCCC----ceEEECCC
Confidence 3679999999999999999999999999999999999999999999 569999999999999977655 78999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+|+.++.+|+++++||++||+|++||++|||||.++ .+||+|+|||+|+|+|+ |++++++++|+..++++|.++|+.|
T Consensus 310 ~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~~~~~l 388 (614)
T PLN02837 310 NCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEEILKQF 388 (614)
T ss_pred CcHHHHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999875 66999999999999998 8999999999999999999999998
Q ss_pred CCcc-eEe--eCCC--------CcCcc--------------------------------------------------c--
Q 015587 165 LAVP-VIK--GKKS--------ELENS--------------------------------------------------K-- 181 (404)
Q Consensus 165 ~~ip-v~~--g~~~--------~~ekf--------------------------------------------------~-- 181 (404)
| +| +.+ +.++ .|+++ +
T Consensus 389 g-~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~tiqldf~~~ 467 (614)
T PLN02837 389 G-FSKYEINLSTRPEKSVGSDDIWEKATTALRDALDDKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLP 467 (614)
T ss_pred C-CCeEEEEecCCchhccCCHHHHHHHHHHHHHHHHHcCCCceeCCCcccccCcceeeEeeccCCceeeecceeEeecch
Confidence 7 55 322 2221 11100 0
Q ss_pred --H--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHH
Q 015587 182 --F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVE 233 (404)
Q Consensus 182 --F--------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~ 233 (404)
| |+|++|+++|++ .||+|+||.||+|+|++ ++..++|.+|++
T Consensus 468 ~~f~l~y~~~d~~~~~pv~ih~~~~G~~eRlia~Lie~~~g----~~P~~laP~qV~IIpi~------~~~~~~A~~Ia~ 537 (614)
T PLN02837 468 ERFDITYVDSNSEKKRPIMIHRAILGSLERFFGVLIEHYAG----DFPLWLAPVQARVLPVT------DNELEYCKEVVA 537 (614)
T ss_pred hhcCcEEECCCCCccCCEEEEcCCccCHHHHHHHHHHHcCC----CCCCCCCCccEEEEEeC------hHHHHHHHHHHH
Confidence 1 999999999864 39999999999999996 356799999999
Q ss_pred HHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 234 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 234 ~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
.||++|++|++| ++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|+++++..++++++++.+.+..++
T Consensus 538 ~Lr~~GirVev~-~~-~slgkkir~A~~~gip~~IiIG~~E~e~~~VtVr~r~~geq~~v~~~el~~~l~~~~~~ 610 (614)
T PLN02837 538 KLKAKGIRAEVC-HG-ERLPKLIRNAETQKIPLMAVVGPKEVETRTLTVRSRHGGELGTMPVDDFINRIQLAVEN 610 (614)
T ss_pred HHHHCCCEEEEe-CC-CCHHHHHHHHHHcCCCEEEEEcchhhhcCEEEEEECCCCceeEeeHHHHHHHHHHHHhh
Confidence 999999999995 45 58999999999999999999999999999999999999999999999988777666543
No 14
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-50 Score=428.08 Aligned_cols=285 Identities=22% Similarity=0.315 Sum_probs=253.8
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
.++|+++|+|.|+.+|+.|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||+|+|.+| +.++||||
T Consensus 194 ~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~-sg~~~~~~~~my~~~d~~~----~~~~LRP~ 268 (575)
T PRK12305 194 IGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKT-SGHLDNYKENMFPPMEIDE----EEYYLKPM 268 (575)
T ss_pred cCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCCcccchhhcccccccCC----ceEEEecC
Confidence 489999999999999999999999999999999999999999999976 8999999999999999887 89999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+|++++++++++..||++||+|++|+|+|||+|.++ .+|+.|+|||+|.|+|+++ +++++.+|+..+++++.++|+.|
T Consensus 269 ~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~-~~~~~~~e~~e~i~l~~~~~~~l 347 (575)
T PRK12305 269 NCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFC-TPDQIEDEILKVLDFVLELLKDF 347 (575)
T ss_pred CCHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEe-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999753 3699999999999999855 67777777788888889999999
Q ss_pred CCcc---eEeeCCC---------CcCc-----------------------------c-------------------c---
Q 015587 165 LAVP---VIKGKKS---------ELEN-----------------------------S-------------------K--- 181 (404)
Q Consensus 165 ~~ip---v~~g~~~---------~~ek-----------------------------f-------------------~--- 181 (404)
|. + +.++.++ .|++ | +
T Consensus 348 gl-~~~~i~l~~r~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~y~~~~~~~~~d~~g~~~~~~t~~~~~~~ 426 (575)
T PRK12305 348 GF-KDYYLELSTREPEKYVGDDEVWEKATEALREALEELGLEYVEDPGGAAFYGPKIDVQIKDALGREWQMSTIQLDFNL 426 (575)
T ss_pred CC-CeEEEEEeCCChhhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCcccccccEEEEeeccCCCceeccceeeeccc
Confidence 74 4 3334321 0100 0 0
Q ss_pred ---H--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHH
Q 015587 182 ---F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATV 232 (404)
Q Consensus 182 ---F--------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~ 232 (404)
| |++++|++.+ +..||+|++|.||+|+|++ ++..++|.+|+
T Consensus 427 ~~~fdl~y~~~~~~~~~p~~ih~~~~G~~eRl~~~l~e~~----~~~~p~~~~p~~v~Ii~~~------~~~~~~a~~i~ 496 (575)
T PRK12305 427 PERFDLEYTAEDGKRQRPVMIHRALFGSIERFIGILTEHY----AGAFPFWLAPVQVVIIPVA------DAHNEYAEEVA 496 (575)
T ss_pred HhhCCCEEECCCCCccCceEEEccccccHHHHHHHHHHHh----CCCCCCCCCCccEEEEEeC------hHHHHHHHHHH
Confidence 1 9999999976 3589999999999999997 35789999999
Q ss_pred HHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 233 EKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 233 ~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
+.||++|++|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+||+|+++++..++++++++.|++++++
T Consensus 497 ~~Lr~~gi~v~~d~~~-~~l~kk~~~A~~~g~p~~iivG~~E~~~~~v~vr~~~~~~q~~v~~~~l~~~l~~~~~~ 571 (575)
T PRK12305 497 KKLRAAGIRVEVDTSN-ERLNKKIRNAQKQKIPYMLVVGDKEVEAGTVSVRTRDGEQLNGMPLDEFIELIKEKIAE 571 (575)
T ss_pred HHHHHCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEEechhhhCCEEEEEEcCCCceeeeeHHHHHHHHHHHHhc
Confidence 9999999999999987 59999999999999999999999999999999999999999999999999888877764
No 15
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=6.8e-50 Score=428.81 Aligned_cols=285 Identities=19% Similarity=0.246 Sum_probs=257.4
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+++++.|++++++.+.++||++|.||.|.+.++|. .|||++.|.++||+| +.++ ++++|||
T Consensus 308 ~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~-~sGh~~~~~~~mf~~-~~~~----~~~~Lrp 381 (686)
T PLN02908 308 ELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWE-TSGHAAHYKENMFVF-EIEK----QEFGLKP 381 (686)
T ss_pred CCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHh-hcCCccccchhccEE-ecCC----eeEEEcC
Confidence 346899999999999999999999999999999999999999999996 599999999999999 4455 8899999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+|++++.+|+++.+||++||+|++++|+|||+|.++ ..||+|+|||+|.|+|+ +++++++.+|+..+++.+.++|+.
T Consensus 382 ~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~~v~~~ 460 (686)
T PLN02908 382 MNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLDYVYEV 460 (686)
T ss_pred CCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876 35999999999999999 788899999999999999999999
Q ss_pred hCCcceEeeCCCCcCcc----------------------------------------------------------cH---
Q 015587 164 FLAVPVIKGKKSELENS----------------------------------------------------------KF--- 182 (404)
Q Consensus 164 l~~ipv~~g~~~~~ekf----------------------------------------------------------~F--- 182 (404)
|| +++.+..++.+++| +|
T Consensus 461 lG-~~~~~~ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~~~~~~~~g~~afygpkid~~~~d~l~r~~~~~t~q~df~lp 539 (686)
T PLN02908 461 FG-FTYELKLSTRPEKYLGDLETWDKAEAALTEALNAFGKPWQLNEGDGAFYGPKIDITVSDALKRKFQCATVQLDFQLP 539 (686)
T ss_pred CC-CcEEEEEeCCccccCCCHHHHHHHHHHHHHHHHHcCCCcEECCCceeecccceEEEEEeccCCEeeccceeecccCH
Confidence 87 57655444333322 11
Q ss_pred ------------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHH
Q 015587 183 ------------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATV 232 (404)
Q Consensus 183 ------------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~ 232 (404)
|++++|++.+ |+.||+|++|.||+|+|++ ++..++|.+|+
T Consensus 540 ~~f~L~Y~~e~~~~~~~pv~ihrai~GsiERli~iL~e~~----~g~~p~wlsp~qv~Vipv~------~~~~~~A~~va 609 (686)
T PLN02908 540 IRFKLSYSAEDEAKIERPVMIHRAILGSVERMFAILLEHY----AGKWPFWLSPRQAIVVPIS------EKSQDYAEEVR 609 (686)
T ss_pred hhcCCEEECCCCCcCCCCEEEEeCceEhHHHHHHHHHHHc----CCCCCCCCCCceEEEEEEC------HHHHHHHHHHH
Confidence 9999998864 5689999999999999997 35778999999
Q ss_pred HHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 233 EKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 233 ~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
+.||++|++|++|.++ .++++|+++|++.|+|++|+||++|+++|+|+|++|+++++..++++++++.++++.++
T Consensus 610 ~~LR~~Gi~vevd~~~-~~l~kkir~A~~~g~~~viivG~~E~~~~~V~vr~~~~~~q~~i~l~el~~~l~~~~~~ 684 (686)
T PLN02908 610 AQLHAAGFYVDVDVTD-RKIQKKVREAQLAQYNYILVVGEAEAATGTVNVRTRDNVVHGEKKIEELLTEFKEERAE 684 (686)
T ss_pred HHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECchHHhCCEEEEEECCCCceeeeeHHHHHHHHHHHHhh
Confidence 9999999999999987 69999999999999999999999999999999999999999999999998888776653
No 16
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.3e-49 Score=420.53 Aligned_cols=287 Identities=22% Similarity=0.359 Sum_probs=251.0
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+.+|++|++++++.+.++||++|.||+|++.++|.+ +||++.+.++||.|.|++| +.++|||
T Consensus 257 ~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~-~g~~~~~~~~my~~~d~~~----~~~~LRP 331 (638)
T PRK00413 257 EEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWET-SGHWDHYRENMFPTTESDG----EEYALKP 331 (638)
T ss_pred CCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHh-cCChhhhhhccceeecCCC----cEEEEec
Confidence 4569999999999999999999999999999999999999999999976 7999999999999999887 8999999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCC-CCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~-~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
++|++++++++++.+||++||+|+||+|+|||||.++. .|+.|+|||+|.|+|+++ +.+++.+|+.+++.++.++|+.
T Consensus 332 ~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g-~~~~~~~e~~eii~l~~~~~~~ 410 (638)
T PRK00413 332 MNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFC-TPEQIEEEVKKVIDLILDVYKD 410 (638)
T ss_pred CCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996522 599999999999999965 5556666667777777899999
Q ss_pred hCCcce--EeeCC--------CCcC-----------------------------cc-------------------cH---
Q 015587 164 FLAVPV--IKGKK--------SELE-----------------------------NS-------------------KF--- 182 (404)
Q Consensus 164 l~~ipv--~~g~~--------~~~e-----------------------------kf-------------------~F--- 182 (404)
||.-++ .++.+ ..++ ++ +|
T Consensus 411 lg~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 490 (638)
T PRK00413 411 FGFEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQLKDALGREWQCGTIQLDFNLP 490 (638)
T ss_pred cCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEeecCCCCeEEeccEeecccCh
Confidence 985233 22321 0000 00 01
Q ss_pred -----------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHH
Q 015587 183 -----------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVE 233 (404)
Q Consensus 183 -----------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~ 233 (404)
|+|++|++.++ ..||+|++|.||+|+|++ ++..++|.+|++
T Consensus 491 ~~~dl~Yt~~~~~~~~p~~i~~~~~g~~eRli~~l~e~~~----~~~p~~~~p~~v~Ii~~~------~~~~~~a~~i~~ 560 (638)
T PRK00413 491 ERFDLTYVGEDGEKHRPVMIHRAILGSMERFIGILIEHYA----GAFPTWLAPVQVVVLPIT------DKHADYAKEVAK 560 (638)
T ss_pred hhcCCEEECCCCCccCcEEEEecceehHHHHHHHHHHHcC----CCCCcccCcceEEEEEeC------hhHHHHHHHHHH
Confidence 99999998763 379999999999999997 357789999999
Q ss_pred HHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 234 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 234 ~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
.||++|++|++|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|++++|..++++++++.+.+++++
T Consensus 561 ~Lr~~gi~v~~d~~~-~~l~kki~~A~~~g~~~~iiiG~~E~~~~~v~vr~~~~~~q~~i~~~~l~~~i~~~~~~ 634 (638)
T PRK00413 561 KLKAAGIRVEVDLRN-EKIGYKIREAQLQKVPYMLVVGDKEVEAGTVSVRRRGGKDLGTMSLDEFIERLLEEIAS 634 (638)
T ss_pred HHHhCCCEEEEECCC-CCHhHHHHHhhccCCCEEEEEcchhhhcCeEEEEECCCCccceeeHHHHHHHHHHHHhh
Confidence 999999999999997 69999999999999999999999999999999999999999999999999988887765
No 17
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.6e-49 Score=401.21 Aligned_cols=293 Identities=18% Similarity=0.249 Sum_probs=248.2
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHh--cCceEeccCcccChhhHhhhcccccCcccceEEEEecC---------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKK--MKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG--------- 72 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~--~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g--------- 72 (404)
|+.++|+|||+|.|..|+++|++++++.+.. .||++|.||++.+.++| +.||||+.|.+.||.+...+
T Consensus 24 y~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~-~~SGH~~~f~d~m~~~~~~~~~~r~d~~~ 102 (456)
T PRK04173 24 YGGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVW-EASGHVDNFSDPLVECKKCKKRYRADHLI 102 (456)
T ss_pred ccchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHH-hhcCCccccCCceeEeCCCCCEeechhhh
Confidence 6779999999999999999999999999987 89999999999999999 56999999999999885211
Q ss_pred ------------------------------CC--------------------CCCCceeccCCChhHHHHHHHhhhccCC
Q 015587 73 ------------------------------ES--------------------DLEVPIAIRPTSETVMYPYFSKWIRGHR 102 (404)
Q Consensus 73 ------------------------------~~--------------------~l~~~l~LRPt~e~~i~~~~~~~i~s~~ 102 (404)
+. +-+..++|||+++.+++..|++|++|||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr 182 (456)
T PRK04173 103 EELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTAR 182 (456)
T ss_pred HHHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhcc
Confidence 11 1124678999999999999999999999
Q ss_pred -CCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcc--eEeeCCC----
Q 015587 103 -DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP--VIKGKKS---- 175 (404)
Q Consensus 103 -~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ip--v~~g~~~---- 175 (404)
+||++++|||+|||||.+|..||+|+|||+|+|+|+ |++++++.+|+..+++.+.++|..+|.-+ +.+..+.
T Consensus 183 ~dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hi-F~~peq~~~e~~~~l~~~~~~l~~lG~~~~~~~~s~~~~~e~ 261 (456)
T PRK04173 183 KKLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEF-FVKPGTDNEWFAYWIELRKNWLLDLGIDPENLRFREHLPEEL 261 (456)
T ss_pred ccCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEE-EECcChHHHHHHHHHHHHHHHHHHcCCCccceEEEecCcchh
Confidence 999999999999999999877999999999999996 99999999999999999999999987422 2111100
Q ss_pred ------------------Cc--------------------Ccc-------------------c--H---HHHHHHHHHcC
Q 015587 176 ------------------EL--------------------ENS-------------------K--F---VQIGVMVMVHG 193 (404)
Q Consensus 176 ------------------~~--------------------ekf-------------------~--F---Rli~~Lie~~~ 193 (404)
.+ .+| . + |++.++++.|.
T Consensus 262 ~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dydL~~~~~~s~~dl~y~~~~~~~~~~~P~vi~~siGieRl~~ail~~~~ 341 (456)
T PRK04173 262 AHYSKATWDIEYKFPFGRFWGELEGIANRTDYDLSRHSKHSGEDLSYFDDETTGEKYIPYVIEPSAGLDRLLLAFLEDAY 341 (456)
T ss_pred hccHHHHHhHHHhCCCCCcEEEEeeeeccchhhcccchhhcCCCeEEEecCCCCceeeeEEEEecccHHHHHHHHHHHHc
Confidence 00 011 0 1 97666655553
Q ss_pred CC---------CCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCC
Q 015587 194 DD---------KGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGV 264 (404)
Q Consensus 194 d~---------~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~Gv 264 (404)
++ .|+.||+|+||+||+|+|++.+ ++..++|.+|++.||++ ++|++|++ .++|+|+++|++.|+
T Consensus 342 ~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~----~e~~~~A~~la~~LR~~-irVelD~~--~slgkkir~A~~~Gi 414 (456)
T PRK04173 342 TEEELGGGDKRTVLRLPPALAPVKVAVLPLVKK----EKLSEKAREIYAELRKD-FNVDYDDS--GSIGKRYRRQDEIGT 414 (456)
T ss_pred ccccccCCcceeEEECCCcCCCCEEEEEEecCc----HHHHHHHHHHHHHHHhc-CEEEEeCC--CCHHHHHHHHHHcCC
Confidence 33 3578999999999999999741 35778999999999999 99999964 489999999999999
Q ss_pred CEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHH
Q 015587 265 PLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKEL 305 (404)
Q Consensus 265 P~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~ 305 (404)
|++|+||++|+++|+|+|++|+++++..++++++++.+.++
T Consensus 415 p~~IIIG~~El~~g~VtvR~r~t~eq~~v~l~el~~~l~~~ 455 (456)
T PRK04173 415 PFCITVDFDTLEDNTVTIRDRDTMEQVRVKIDELKDYLAEK 455 (456)
T ss_pred CEEEEECCchhhCCEEEEEECCCCceEEEeHHHHHHHHHhh
Confidence 99999999999999999999999999999999988777543
No 18
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.3e-47 Score=379.34 Aligned_cols=282 Identities=20% Similarity=0.239 Sum_probs=242.1
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccc-cCcccceEEEEecCCCCCCCc
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHI-EGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~-~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|..+.++|||.||+|..+.+|++|.+.+++.+++|||.+|.||+||.+++|.+++|.. +...+|||.|+|+|| +.
T Consensus 1 ~~~~~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkgg----r~ 76 (429)
T COG0124 1 MMKIQRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGG----RS 76 (429)
T ss_pred CCCccCCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCC----CE
Confidence 4567889999999999999999999999999999999999999999999999888854 457899999999998 99
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
++|||+.|+++++++..+.... .+|+|+|++|+||||| +||+| |+|||+|++++++|.+.+.+|+|++.++ .+
T Consensus 77 laLRpe~Tapv~R~~~en~~~~-~~p~k~yy~g~vfRyE-rPQ~G--R~RqF~Q~g~E~iG~~~~~~DAEvi~l~---~~ 149 (429)
T COG0124 77 LALRPELTAPVARAVAENKLDL-PKPLKLYYFGPVFRYE-RPQKG--RYRQFYQFGVEVIGSDSPDADAEVIALA---VE 149 (429)
T ss_pred EEecccCcHHHHHHHHhccccc-cCCeeEEEecceecCC-CCCCC--CceeeEEcCeEEeCCCCcccCHHHHHHH---HH
Confidence 9999999999999999876554 4899999999999999 78999 9999999999999999999999999998 48
Q ss_pred HHHHhCCcceE--eeCC------------C----------CcCc------------------------------------
Q 015587 160 IYEEFLAVPVI--KGKK------------S----------ELEN------------------------------------ 179 (404)
Q Consensus 160 ~~~~l~~ipv~--~g~~------------~----------~~ek------------------------------------ 179 (404)
+++.+|.-.+. ++.. + ..++
T Consensus 150 ~l~~lGi~~~~l~iN~~g~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~a 229 (429)
T COG0124 150 ILEALGIGGFTLEINSRGILEGRLEYLGIDQREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNA 229 (429)
T ss_pred HHHHcCCCcEEEEEcCcccHHHHHHhhcchhHHHHHHHHhhhhhHHHHHhhhhhhhhhhhchHHHHHhccchHHHHHhcc
Confidence 88888743221 1000 0 0000
Q ss_pred --------------c----------------c----------------------------------------H-------
Q 015587 180 --------------S----------------K----------------------------------------F------- 182 (404)
Q Consensus 180 --------------f----------------~----------------------------------------F------- 182 (404)
| | |
T Consensus 230 p~i~~~~~~e~~~~~~~v~~~L~~~g~~~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pa 309 (429)
T COG0124 230 PELLDYLDEESLEHLEELLALLDALGISYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPA 309 (429)
T ss_pred HHhhhhccHHHHHHHHHHHHHHHHcCCCEEEccceecchhhccceEEEEEEcCCccccceecCccchHHHHHhCCCCCCc
Confidence 0 0 0
Q ss_pred --------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhH
Q 015587 183 --------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGW 254 (404)
Q Consensus 183 --------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~ 254 (404)
|++.+|.+. |...| ..++.+|+|++++. ....++.++++.||++|++|++|... +++++
T Consensus 310 vGFaiGveRl~~~l~~~-----~~~~~-~~~~~~v~v~~~~~------~~~~~a~~la~~LR~~g~~~~~~~~~-r~~k~ 376 (429)
T COG0124 310 VGFAIGVERLILALEEE-----GKEDP-VETRVDVYVVPLGE------DAEPEALKLAQKLRAAGISVEVDYSG-RKLKK 376 (429)
T ss_pred eeEehHHHHHHHHHHHc-----CCCCC-cCCCCCEEEEEcCc------hhHHHHHHHHHHHHHcCCcEEEEecc-ccHHH
Confidence 998887774 33222 24678999999984 33689999999999999999999987 68999
Q ss_pred HHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 255 KYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 255 k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
||++|++.|++++|+||++|+++|+|+||++.||+|..++++++++.+...+
T Consensus 377 q~k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~~ 428 (429)
T COG0124 377 QFKYADKLGARFAVILGEDELANGVVTVKDLATGEQEEVPLDELVEELKELL 428 (429)
T ss_pred HHHHHHHCCCCEEEEEcchHHhcCCEEEeeCCCCccceecHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999998887643
No 19
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-44 Score=344.75 Aligned_cols=287 Identities=18% Similarity=0.298 Sum_probs=243.8
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
...+|+|-|+|.|.+..+++.+.++..+...|.+.|.+|++.+++||+ ++|+|+..++|+|.+.|+.| ..+||.|
T Consensus 39 ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWe-kTgRw~~~gsEl~rl~Dr~g----kq~cL~p 113 (457)
T KOG2324|consen 39 PSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWE-KTGRWDAMGSELFRLHDRKG----KQMCLTP 113 (457)
T ss_pred cCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHH-hcCcccccchhheEeeccCC----CEeccCC
Confidence 457899999999999999999999999999999999999999999996 59999999999999999998 8999999
Q ss_pred CChhHHHHHHHhhhc-cCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 85 TSETVMYPYFSKWIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 85 t~e~~i~~~~~~~i~-s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+|..++.+++..+. ||++||+++||+|..||+|.||+.||+|.|||+|.|+++|..+++.|.+.+..+.++|.++|++
T Consensus 114 ThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkq 193 (457)
T KOG2324|consen 114 THEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQ 193 (457)
T ss_pred chHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 9999999999999999999999889999999999999999999999999999999999999999
Q ss_pred hCCcceEe---------eCCC------------------------CcCcc------------------------------
Q 015587 164 FLAVPVIK---------GKKS------------------------ELENS------------------------------ 180 (404)
Q Consensus 164 l~~ipv~~---------g~~~------------------------~~ekf------------------------------ 180 (404)
|+ +|++. |.-+ ..|.+
T Consensus 194 L~-~pfVkv~AdsG~iGG~vShEfhl~~~vgED~l~~C~~C~~s~n~e~~~~sk~~~Cp~C~~~~L~~~~~IEVgHtF~L 272 (457)
T KOG2324|consen 194 LG-LPFVKVWADSGDIGGEVSHEFHLIHPVGEDTLMSCPSCGYSKNSEDLDLSKIASCPKCNEGRLTKTKSIEVGHTFLL 272 (457)
T ss_pred cC-CCeEEEeecccccCceeeeeEeccCccCccceeecCcCCccCchhhhcCCccccCCcccCCCcccccceEEEEEEEe
Confidence 86 77531 1000 00100
Q ss_pred -------------cH-----------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHH
Q 015587 181 -------------KF-----------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTA 230 (404)
Q Consensus 181 -------------~F-----------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~ 230 (404)
|+ |+|+|.++..+|++|++||..+||++|.+++... + .....+.+
T Consensus 273 G~kYS~~lna~f~~~~gKpe~l~MgCyGIGVtRllaAa~evls~~~~lrwP~~iAPy~vcli~pk~-~----~~~q~~~e 347 (457)
T KOG2324|consen 273 GTKYSKPLNAKFVNVEGKPEFLHMGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYKVCLIGPKK-G----SKSQRAQE 347 (457)
T ss_pred ccccccccCceeeeecCCcceEEecceeccHHHHHHHHHHHhccccccccccccCcceeEEeccCC-c----chhhhHHH
Confidence 11 9999999999999999999999999996554332 1 22233444
Q ss_pred HHHHHhhC------CCEEEEeCCCCCChhHHHHHHHHcCCCEEEEEC-ccccCCCeEEEEECCCCceeeechhhHHHHH
Q 015587 231 TVEKLCEA------GIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIG-PKDLANDQVRAVRRDNGAKIDLPRGSLVERV 302 (404)
Q Consensus 231 i~~~Lr~~------Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG-~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i 302 (404)
++++|-.. --.+.+|||.+.++|+++++|++.|+|++|+|| ..-.++..+.|..+..|+...+..+.+.+.+
T Consensus 348 v~~el~~~~~~~~l~~~iLlddr~~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge~~~l~~~~~~~l~ 426 (457)
T KOG2324|consen 348 VISELLNDEAVGNLHGEILLDDREELTIGKRIKDANRLGIPFVIVVGNSASWDNPEIEVRTIRWGESAELDKDGFMKLL 426 (457)
T ss_pred HHHHhhcchhhhhhccceeccchhhhhhHHhhhhHHhcCCCEEEEEcccccCCCceEEEEEeecCceeccchhhHHHHh
Confidence 55444321 125788999889999999999999999999999 7778888999999988987777666654433
No 20
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.7e-44 Score=368.28 Aligned_cols=285 Identities=25% Similarity=0.364 Sum_probs=254.4
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
...|++.|+|.|..+++.++++++.....+||++|.||++...++| +.||||+.|.+.||.+... + +.++|||+
T Consensus 208 ~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~-~~SGH~~~y~e~mf~~~~~-~----~~~~lKpm 281 (589)
T COG0441 208 EGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELW-ELSGHWDNYKEDMFLTESD-D----REYALKPM 281 (589)
T ss_pred cCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccc-hhccchhhccccceeeccC-C----hhheeeec
Confidence 4789999999999999999999999999999999999999999999 4699999999999988643 3 78999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCC-CccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPT-PFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~-gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+|++++.+|++..+|||+||+|+++.|.|||+|.++.. ||.|+|.|+|.|+|+ +|+.+++.+|+..+++....+++.+
T Consensus 282 NCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~v~~~f 360 (589)
T COG0441 282 NCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILEVYKDF 360 (589)
T ss_pred cCHhHHHHHhcCCcceeccchhhhhcceeecccCcchhhccccccceeecccce-eccHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998776 999999999999999 7789999999999999999999889
Q ss_pred CCcceE--eeCCC-------CcCcc------------------------------------------------cH-----
Q 015587 165 LAVPVI--KGKKS-------ELENS------------------------------------------------KF----- 182 (404)
Q Consensus 165 ~~ipv~--~g~~~-------~~ekf------------------------------------------------~F----- 182 (404)
|...+. ++.++ .|++. +|
T Consensus 361 g~~~y~~~ls~r~k~ig~d~~W~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQlDf~lpeR 440 (589)
T COG0441 361 GFTDYEVKLSTRPKFIGSDEMWDKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPER 440 (589)
T ss_pred CCceEEEEEecCCcccCChhhhHHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEEEecCChhh
Confidence 853232 22221 11110 11
Q ss_pred ---------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHH
Q 015587 183 ---------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKL 235 (404)
Q Consensus 183 ---------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~L 235 (404)
|++++|++.+ .+.+|.|+||+||+|+|++. +..+||.++++.|
T Consensus 441 F~l~Yv~~d~~~~~PvmiHrai~GSiERfi~iLiE~~----~G~~P~WLaPvQv~VipV~~------~~~~ya~~v~~~L 510 (589)
T COG0441 441 FDLEYVDEDGEKKRPVIIHRAILGSIERFIGILLEHY----AGALPTWLAPVQVRVIPVAD------EHLDYAKEVAEKL 510 (589)
T ss_pred ceEEEEcCCCCccCCEEEEeccchhHHHHHHHHHHhc----cCCCcccCCccEEEEEEeCh------HHHHHHHHHHHHH
Confidence 9999999965 34999999999999999984 5679999999999
Q ss_pred hhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 236 CEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 236 r~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
+++|+||++|++++ ++|+|++.|...+||+.|+||.+|++++.|++++|.++++..++++++++.+++..+.
T Consensus 511 ~~~giRvdvD~~~e-~l~kKIR~a~~~kipyiiVvG~kE~e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~~~ 582 (589)
T COG0441 511 RKAGIRVDIDDRNE-KLGKKIREAGTQKIPYVIVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEIEG 582 (589)
T ss_pred HHcCCeeeeccccc-chHHHHHHHHhcCCCEEEEEchhhhccCceEEEEccCCccccccHHHHHHHHHHHhhc
Confidence 99999999999974 9999999999999999999999999999999999999988889999999888776654
No 21
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=2.9e-42 Score=352.40 Aligned_cols=284 Identities=13% Similarity=0.135 Sum_probs=240.6
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcc-cccCcccceEEEEecCCCCCCCc
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKD-HIEGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g-~~~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|+...+++|+.||+|..+..|+.|++.+++.|+++||++|.||+|++.++|.+.+| |++.+.++||.|.|.+| +.
T Consensus 1 ~~~~~~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g----~~ 76 (430)
T CHL00201 1 MAKIQAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSN----RD 76 (430)
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCC----CE
Confidence 67788999999999999999999999999999999999999999999999987656 77778899999999887 89
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
++|||+.|++++++++....+++++|+|+||+|+|||+| +||.| |+|||+|.|+|++|...+.||+|++.++ .+
T Consensus 77 l~LRpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e-~~q~G--R~Ref~Q~g~EiiG~~~~~aD~Evi~l~---~~ 150 (430)
T CHL00201 77 ITLRPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYE-RPQSG--RQRQFHQLGIEFIGSIDARADTEVIHLA---MQ 150 (430)
T ss_pred EEeCCCCcHHHHHHHHHccccccCCCeEEEEEcceecCC-CCcCC--ccceeEEeceEEECCCChhhHHHHHHHH---HH
Confidence 999999999999998777667778999999999999999 67999 9999999999999999999999998887 46
Q ss_pred HHHHhCCcc--eEeeCC------------------------C---------Cc----C-------c--------------
Q 015587 160 IYEEFLAVP--VIKGKK------------------------S---------EL----E-------N-------------- 179 (404)
Q Consensus 160 ~~~~l~~ip--v~~g~~------------------------~---------~~----e-------k-------------- 179 (404)
+++.+|.-. +.+|.. + .. + .
T Consensus 151 ~l~~lGl~~~~i~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l~~~~~~ 230 (430)
T CHL00201 151 IFNELQVKNLILDINSIGKLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSL 230 (430)
T ss_pred HHHHcCCCceEEEECCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHHHhhhhH
Confidence 777776411 222210 0 00 0 0
Q ss_pred -------------------c------------------------------------------cH---------------H
Q 015587 180 -------------------S------------------------------------------KF---------------V 183 (404)
Q Consensus 180 -------------------f------------------------------------------~F---------------R 183 (404)
+ .| |
T Consensus 231 ~~~~~l~~~~~~l~~~g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~fg~~~~PavGfa~g~er 310 (430)
T CHL00201 231 ESTEHFYDVCTYLNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTPAVGCAIGLER 310 (430)
T ss_pred HHHHHHHHHHHHHHHcCCcEEECcccccCCccccccEEEEEECCCCCcceeeeccchHHHHHHhCCCCCCeeEEEecHHH
Confidence 0 01 8
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcC
Q 015587 184 QIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKG 263 (404)
Q Consensus 184 li~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~G 263 (404)
++.+|.+ +...|. .+.+|+|+|++ ++...+|.++++.||++|++|++|.+. .++++++++|++.|
T Consensus 311 l~~~l~~------~~~~~~--~~~~v~v~~~~------~~~~~~a~~ia~~LR~~Gi~veid~~~-~~l~k~~k~A~~~~ 375 (430)
T CHL00201 311 LLLIAKD------NIILPK--QSIDVYIATQG------LKAQKKGWEIIQFLEKQNIKFELDLSS-SNFHKQIKQAGKKR 375 (430)
T ss_pred HHHHHhc------cccCCC--CCCCEEEEEcC------HHHHHHHHHHHHHHHhCCCeEEEeeCC-CCHHHHHHHHHHcC
Confidence 8876543 122333 46789999986 356789999999999999999999987 58999999999999
Q ss_pred CCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHH
Q 015587 264 VPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEV 309 (404)
Q Consensus 264 vP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~ 309 (404)
+|++++||++|+++|+|+|+++.++++.+++++++++.+.++...|
T Consensus 376 ~~~viiiG~~E~~~~~vtvk~l~~~~q~~i~~~~~~~~~~~~~~~~ 421 (430)
T CHL00201 376 AKACIILGDNEIMDNCITIKWLDEQVQENAQYSNFKQEISYLKKKI 421 (430)
T ss_pred CCEEEEEechHHhCCcEEEEECCCCCcEEEcHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988887776654
No 22
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=2e-40 Score=318.08 Aligned_cols=179 Identities=31% Similarity=0.485 Sum_probs=166.6
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccC-cccceEEEEecCCCCCCCc
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG-FAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~-f~~e~~~~~~~g~~~l~~~ 79 (404)
|+++.+++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++|. ++|++.. |.+|+|++++.++++++++
T Consensus 15 ~~~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~-~~g~~~~~~~~e~~~~~~~~~~~~~~~ 93 (264)
T cd00772 15 LADQGPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLE-KEAEHDEGFSKELAVFKDAGDEELEED 93 (264)
T ss_pred CccccCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHh-hcCCcccccCccceEEEeCCCCccCce
Confidence 5788889999999999999999999999999999999999999999999995 5787755 6699999999887777789
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
++||||+|++++.++++++.||++||+|+|||++|||+|.+|++||+|+|||+|+|+|++|+++++|++|+..++++|.+
T Consensus 94 l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~ 173 (264)
T cd00772 94 FALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAE 173 (264)
T ss_pred EEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHhCCcceEeeCCCCcCcc
Q 015587 160 IYEEFLAVPVIKGKKSELENS 180 (404)
Q Consensus 160 ~~~~l~~ipv~~g~~~~~ekf 180 (404)
+|+++|++|+.++..+.+++|
T Consensus 174 i~~~l~~lp~~~~~~~~~d~~ 194 (264)
T cd00772 174 IARDLAAIDFIEGEADEGAKF 194 (264)
T ss_pred HHHhcCCccEEEEEcCCCccc
Confidence 999998899988776655544
No 23
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=9.8e-40 Score=338.31 Aligned_cols=272 Identities=17% Similarity=0.228 Sum_probs=228.1
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|++..+++|++||+|.++.++++|++.+++.|+++||++|.||+||+.++|.++.|. ...++||.|.|++| +.+
T Consensus 67 ~~~~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~--~~~~~~y~f~D~~g----~~l 140 (487)
T PLN02530 67 KIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGE--EITDQLYNFEDKGG----RRV 140 (487)
T ss_pred ccccCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCc--ccccceEEEECCCC----CEE
Confidence 345788999999999999999999999999999999999999999999999876663 47789999999988 899
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+|||+.|++++++++....+. ++|+|+||+|+|||+| +||+| |+|||+|.++|++|.+...||+|++.++ .++
T Consensus 141 ~LRpD~T~~iaR~~~~~~~~~-~~P~r~~y~g~vfR~e-~~q~g--r~REf~Q~giEiiG~~~~~aDaEvi~l~---~~~ 213 (487)
T PLN02530 141 ALRPELTPSLARLVLQKGKSL-SLPLKWFAIGQCWRYE-RMTRG--RRREHYQWNMDIIGVPGVEAEAELLAAI---VTF 213 (487)
T ss_pred ecCCCCcHHHHHHHHhccccc-CCCeEEEEEcCEEcCc-CCCCC--CccceEEcCeeEeCCCCcchhHHHHHHH---HHH
Confidence 999999999999998876553 6999999999999999 67999 9999999999999999999999999887 467
Q ss_pred HHHhCCc--ce--EeeCC-------------C-----------CcCc-----c---------------------------
Q 015587 161 YEEFLAV--PV--IKGKK-------------S-----------ELEN-----S--------------------------- 180 (404)
Q Consensus 161 ~~~l~~i--pv--~~g~~-------------~-----------~~ek-----f--------------------------- 180 (404)
++.+|.- .+ .+|.+ . ..++ +
T Consensus 214 l~~lgl~~~~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~~~~~~~~l~~l~~~~~~~ 293 (487)
T PLN02530 214 FKRVGITSSDVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVSEEAIEGILDVLSLKSLD 293 (487)
T ss_pred HHHcCCCCCceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCCCHHHHHHHHHHHhccCHH
Confidence 7877732 12 22210 0 0000 0
Q ss_pred ----------------------------------c--------------H------------------------------
Q 015587 181 ----------------------------------K--------------F------------------------------ 182 (404)
Q Consensus 181 ----------------------------------~--------------F------------------------------ 182 (404)
| |
T Consensus 294 ~l~~~~~~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~~~~~~I~gGGRYD~Li~~fgg~~~ 373 (487)
T PLN02530 294 DLEALLGADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGGEDT 373 (487)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecCCCcceeeecccHHHHHHHhCCCCC
Confidence 0 0
Q ss_pred ----------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCCh
Q 015587 183 ----------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSP 252 (404)
Q Consensus 183 ----------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~ 252 (404)
|++. +++. +| .+|.+.+|.||+|++++ ++...+|.++++.||++|++|++|..+ .++
T Consensus 374 pAvGFa~g~~~l~~-~l~~----~g-~~p~~~~~~dVlVi~~~------~~~~~~A~~ia~~LR~~Gi~vevd~~~-~~l 440 (487)
T PLN02530 374 PACGFGFGDAVIVE-LLKE----KG-LLPELPHQVDDVVFALD------EDLQGAAAGVASRLREKGRSVDLVLEP-KKL 440 (487)
T ss_pred CeeEEEEhHHHHHH-HHHh----cC-CCCCCCCCCcEEEEEcC------hHHHHHHHHHHHHHHHCCCeEEEecCC-CCH
Confidence 2222 2221 23 36777889999999987 356789999999999999999999987 589
Q ss_pred hHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhH
Q 015587 253 GWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSL 298 (404)
Q Consensus 253 g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el 298 (404)
++++++|++.|+|++++||++|+++|+|+||++.++++..++++++
T Consensus 441 ~k~ik~A~k~g~~~iviiG~~E~~~~~V~vK~l~sgeq~~v~~~el 486 (487)
T PLN02530 441 KWVFKHAERIGAKRLVLVGASEWERGMVRVKDLSSGEQTEVKLDEL 486 (487)
T ss_pred HHHHHHHHHCCCCEEEEEchhHHhCCeEEEEECCCCcceEechHHc
Confidence 9999999999999999999999999999999999999999988764
No 24
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-40 Score=325.37 Aligned_cols=281 Identities=22% Similarity=0.307 Sum_probs=248.7
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
.+|...|+|.|.+|++.+.++++..+.+.||+||.||.+.+..||+ .||||+.|+++||.|.-.. ++++|.|+.
T Consensus 181 SPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe-~SGHwqnY~enmF~~e~ek-----e~~~LKPMN 254 (560)
T KOG1637|consen 181 SPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWE-TSGHWQNYSENMFKFEVEK-----EEFALKPMN 254 (560)
T ss_pred CCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhh-hccchhhhhhhceeeeech-----hhhccCccC
Confidence 5799999999999999999999999999999999999999999996 5999999999999997632 679999999
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCC-CccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPT-PFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~-gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
|++++-||++.-+|||+||+|+..+|.++|+|.++.. ||.|+|.|+|.|+|+ +|+.++..+|+..+++....+|.-+|
T Consensus 255 CPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHI-FCt~~Qi~~Eik~~l~fl~~vY~~fg 333 (560)
T KOG1637|consen 255 CPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHI-FCTPDQVKEEIKGCLDFLDYVYGVFG 333 (560)
T ss_pred CCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceE-EecCccHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999887 999999999999999 89999999999999998888888666
Q ss_pred C-cceEeeCCCCcCcc----------------------------------------------------------cH----
Q 015587 166 A-VPVIKGKKSELENS----------------------------------------------------------KF---- 182 (404)
Q Consensus 166 ~-ipv~~g~~~~~ekf----------------------------------------------------------~F---- 182 (404)
. .+..++.+ +++| +|
T Consensus 334 f~f~l~lSTR--Pe~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l~Dal~r~hQcaTIQLDFqLP~ 411 (560)
T KOG1637|consen 334 FTFKLNLSTR--PEKFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITLDDALGRKHQCATIQLDFQLPI 411 (560)
T ss_pred ccceeEeccC--hHHhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEhhhhcCcccceeeeeecccChh
Confidence 2 23222222 2222 11
Q ss_pred ----------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHH
Q 015587 183 ----------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEK 234 (404)
Q Consensus 183 ----------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~ 234 (404)
|+++.|+|.+ |+.||.|++|.|++|||++. ....||.+|.++
T Consensus 412 rFdL~y~~~~g~~erPVmIHRAIlGSvERmiaiL~E~~----~gkwPFWlSPRq~~vIpVse------~~~~ya~~V~~q 481 (560)
T KOG1637|consen 412 RFDLEYETEDGDLERPVMIHRAILGSVERMIAILLESY----GGKWPFWLSPRQAVVIPVSE------GPLDYATSVQKQ 481 (560)
T ss_pred hcCceeecccccccchhhHHHHHhhhHHHHHHHHHHHh----CCCCCeeeccceEEEEECCC------cchhHHHHHHHH
Confidence 9999999975 78999999999999999983 568899999999
Q ss_pred HhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCC---ceeeechhhHHHHHHHHHH
Q 015587 235 LCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNG---AKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 235 Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~---~k~~v~~~el~~~i~~~l~ 307 (404)
|+.+|+-+++|.++ .+++++++.|...+..+.++||++|++.++|.|+.|++. .+..++++++.+.+.++-+
T Consensus 482 l~~a~f~~Dld~t~-~tl~kkir~Aqla~yn~i~VVGdkE~~~~~vnVr~Rd~~~~~~~~~~tie~~~~~~~~l~~ 556 (560)
T KOG1637|consen 482 LEEAGFYVDLDPTD-STLRKKIRNAQLAHYNFIFVVGDKEVETGRVNVRTRDNRDNKTESEMTIEELSDEFKELKS 556 (560)
T ss_pred HHhhhceeecCCcc-chHHHHHhhhhhcceeEEEEEchhhhhcCceeeeccccccccccceeeHHHHHHHHHHhHh
Confidence 99999999999988 699999999999999999999999999999999999644 3457788888877766543
No 25
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.2e-37 Score=314.08 Aligned_cols=274 Identities=19% Similarity=0.232 Sum_probs=227.1
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccc-cCcccceEEEEecCCCCCCCc
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHI-EGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~-~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|++...++|++||+|.++.+++.|++.+++.|.++||++|.||+|++.++|.+.+|++ ....++||.|.|.+| +.
T Consensus 1 ~~~~~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g----~~ 76 (412)
T PRK00037 1 MMKIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGG----RS 76 (412)
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCC----CE
Confidence 5678899999999999999999999999999999999999999999999997766765 345789999999877 89
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
++|||+.|++++++++... .+|+|+||+|+|||+| +++.| |.|||+|.|+|+++.+.+.+++|++.++ .+
T Consensus 77 l~LRpd~T~~~ar~~~~~~----~~p~r~~~~g~vfR~e-~~~~g--r~ref~Q~g~ei~g~~~~~~d~E~i~~~---~~ 146 (412)
T PRK00037 77 LTLRPEGTAPVVRAVIEHK----LQPFKLYYIGPMFRYE-RPQKG--RYRQFHQFGVEVIGSDSPLADAEVIALA---AD 146 (412)
T ss_pred EEecCCCcHHHHHHHHhCC----CCCeEEEEEcCccccC-CCCCC--cccceEEcCeeeeCCCCcchhHHHHHHH---HH
Confidence 9999999999999887642 2899999999999999 55788 9999999999999999888999987776 46
Q ss_pred HHHHhCCcceEe------------------------eCC--------------------------C---CcCc---c---
Q 015587 160 IYEEFLAVPVIK------------------------GKK--------------------------S---ELEN---S--- 180 (404)
Q Consensus 160 ~~~~l~~ipv~~------------------------g~~--------------------------~---~~ek---f--- 180 (404)
+++.+|.-.+.+ +.. . +..+ +
T Consensus 147 ~l~~lg~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (412)
T PRK00037 147 ILKALGLKGLKLLINSLGDFEIRANYRKALVGFLEKGLDELDEDSKRRLETNPLRILDKKDKEDQELLKDAPKLLDYLDE 226 (412)
T ss_pred HHHHcCCCceeeeeccCCCHHHhHHHHHHHHHHHHhCchhhchHHHHHHhhCchhhhcccchhhHHHHhcchHHHHHhhH
Confidence 777665311100 000 0 0000 0
Q ss_pred ------------------------------c--------------------------------H---------------H
Q 015587 181 ------------------------------K--------------------------------F---------------V 183 (404)
Q Consensus 181 ------------------------------~--------------------------------F---------------R 183 (404)
+ | |
T Consensus 227 ~~~~~l~~l~~~l~~~~~~i~~Dl~~~r~l~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfs~~le~ 306 (412)
T PRK00037 227 ESKEHFEELKELLDALGIPYVIDPRLVRGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGGPPTPAVGFAIGVER 306 (412)
T ss_pred HHHHHHHHHHHHHHHcCCCEEECCCcccChhhccceEEEEEECCCCccceeeeccchhHHHHHhCCCCCceEEEEEcHHH
Confidence 0 1 5
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcC
Q 015587 184 QIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKG 263 (404)
Q Consensus 184 li~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~G 263 (404)
++.+|.+.. . +|.||+|+|++. ....++.++++.||++|++|++|..+ .++++++++|+++|
T Consensus 307 l~~~l~~~~-----~------~~~~vlI~~~~~------~~~~~a~~i~~~Lr~~Gi~v~i~~~~-~~~~~~~~~a~~~g 368 (412)
T PRK00037 307 LLLLLEELG-----E------EPVDVYVVPLGE------DAELAALKLAEKLRAAGIRVELDYGG-RKLKKQFKYADKSG 368 (412)
T ss_pred HHHHHHhcC-----C------CCCCEEEEEeCh------HHHHHHHHHHHHHHHCCCeEEEeCCC-CCHHHHHHHHHHcC
Confidence 554444321 1 688999999873 45678999999999999999999876 58999999999999
Q ss_pred CCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 264 VPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 264 vP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
+|++|+||++|+++|+|+|++++++++..++++++++.|++++
T Consensus 369 i~~~viig~~e~~~~~v~vr~~~~~~~~~v~~~el~~~i~~~~ 411 (412)
T PRK00037 369 ARFVLILGEDELANGTVTVKDLRTGEQQTVPLDELVEALKELL 411 (412)
T ss_pred CCEEEEEChhHHhCCeEEEEECCCCceEEeeHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998887654
No 26
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=100.00 E-value=1.9e-37 Score=319.81 Aligned_cols=295 Identities=20% Similarity=0.282 Sum_probs=231.6
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHH-HhcCceEeccCcccChhhHhhhcccccCcccceEEEEecC----------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG---------- 72 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~-~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g---------- 72 (404)
|+.++|+|||.|.|..+.++|.+.|++.| ...|+.+|++|++.|.++| +.|||++.|++-|...+..|
T Consensus 23 YgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~-~aSGh~~~F~D~mv~~~~~~~~~RaD~l~e 101 (551)
T TIGR00389 23 YGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVL-KASGHVDNFTDWMVDCKSCKERFRADHLIE 101 (551)
T ss_pred ccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHH-HhcCCccccCCceeecCCCCCEecchHHHH
Confidence 67799999999999999999999999999 4778999999999999999 67999999998776543221
Q ss_pred ------------------------------CCCC------------------CCceeccCCChhHHHHHHHhhhccCC-C
Q 015587 73 ------------------------------ESDL------------------EVPIAIRPTSETVMYPYFSKWIRGHR-D 103 (404)
Q Consensus 73 ------------------------------~~~l------------------~~~l~LRPt~e~~i~~~~~~~i~s~~-~ 103 (404)
+..+ +...+|||+...+|.-.|++..++.+ .
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQGiFvnFk~l~~~~~~k 181 (551)
T TIGR00389 102 EKLGKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQGIFINFKRLLQFFRRK 181 (551)
T ss_pred HHhhhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchhhHHhHHHHHHhcCCC
Confidence 1111 24678999999999999999887655 7
Q ss_pred CCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChh---------------------------hHHH-------H
Q 015587 104 LPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKS---------------------------EADD-------E 149 (404)
Q Consensus 104 lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~---------------------------~a~~-------e 149 (404)
||+-+.|+|+.||+|.+|+.|++|+|||.|.|++.|..... +|.+ .
T Consensus 182 lPfgiaQiGk~fRNEIsPr~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~~~l~~~~~~~~~~~eav~~g~i~n~~ 261 (551)
T TIGR00389 182 LPFGVAQIGKSFRNEISPRNGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDILPLLPRQMQESGIGEAVESGMIENET 261 (551)
T ss_pred CCeeehhhhHhhhcccCcccceEEeehhhhchhheecCcccccchhhHHHHHHHHhhccchhhhccHHHHHHhcccchHH
Confidence 99999999999999999999999999999999998533321 1111 0
Q ss_pred HHHHHHHHHHHHHHhCCcc---------------e-----------------EeeC--CCC------------------c
Q 015587 150 VLQILELYRRIYEEFLAVP---------------V-----------------IKGK--KSE------------------L 177 (404)
Q Consensus 150 ~~~~~~~y~~~~~~l~~ip---------------v-----------------~~g~--~~~------------------~ 177 (404)
+.-.+.....++.++|.-| + ..|. +++ .
T Consensus 262 ~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~Gw~E~~G~a~R~~yDL~~H~~~s~~~l~~~~~ 341 (551)
T TIGR00389 262 LGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAKDCWDFEFLTPYGWIECVGIADRGDYDLTQHSKFSGKSLSVFDK 341 (551)
T ss_pred HHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhccccEeEEEecCCCcEEEEEeccccccChHHHHHhhCCCeEEEee
Confidence 0001111245666776311 0 0110 110 0
Q ss_pred C------------------------------------------------cc----------------------------c
Q 015587 178 E------------------------------------------------NS----------------------------K 181 (404)
Q Consensus 178 e------------------------------------------------kf----------------------------~ 181 (404)
. .| .
T Consensus 342 ~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~VIepS 421 (551)
T TIGR00389 342 LDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEELDKNEVELDKDLVEIEMVTEVVHGEKYIPHVIEPS 421 (551)
T ss_pred cCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhccceecchhhhhheeeeeccCCcEecceEEEcc
Confidence 0 01 1
Q ss_pred H---HHHHHHHHHcCCC--------CCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 015587 182 F---VQIGVMVMVHGDD--------KGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNY 250 (404)
Q Consensus 182 F---Rli~~Lie~~~d~--------~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~ 250 (404)
| |++++|+++..+. .++.||+++||+||+|+|+..+ ++...+|.+|++.||++|++|++|+++
T Consensus 422 ~GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~----~el~~~A~eIa~~LR~~GI~VeiD~s~-- 495 (551)
T TIGR00389 422 FGIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNK----EELKEIAKEIFQALRKTGIRIKYDDSG-- 495 (551)
T ss_pred cCHHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCc----HHHHHHHHHHHHHHHHCCCEEEEECCC--
Confidence 1 9999998854441 2579999999999999999742 357789999999999999999999975
Q ss_pred ChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHH
Q 015587 251 SPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKEL 305 (404)
Q Consensus 251 s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~ 305 (404)
++|+|+++|++.|+|++|+||++++++|+|+|++|++++|..++++++.+.+.++
T Consensus 496 sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~eQ~~I~ldeL~~~L~e~ 550 (551)
T TIGR00389 496 TIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSMKQVRVKIKELPSYIKKL 550 (551)
T ss_pred CHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEeeHHHHHHHHHhh
Confidence 4999999999999999999999999999999999999999999999988777654
No 27
>PLN02734 glycyl-tRNA synthetase
Probab=100.00 E-value=1.4e-37 Score=325.14 Aligned_cols=293 Identities=21% Similarity=0.285 Sum_probs=231.2
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHH-hcCceEeccCcccChhhHhhhcccccCcccceEEEEecC----------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG---------- 72 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~-~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g---------- 72 (404)
|+.+.|+|||.|.|..+.++|.+.|++.|- .-++-+|++|++.|..+| +.|||++.|.+-|-.....|
T Consensus 95 YGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~-kASGHvd~F~D~mv~~~~~~~~~RADhlie 173 (684)
T PLN02734 95 YGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVL-KASGHVDKFTDLMVKDEKTGTCFRADHLLK 173 (684)
T ss_pred cCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHe-eecCCcccccceeeEcCCCCcEecchHHHH
Confidence 678999999999999999999999999994 457789999999999999 67999999998654322111
Q ss_pred --------------------------------------------------CCCC------------------CCceeccC
Q 015587 73 --------------------------------------------------ESDL------------------EVPIAIRP 84 (404)
Q Consensus 73 --------------------------------------------------~~~l------------------~~~l~LRP 84 (404)
|.+| +...+|||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF~T~IGp~~~~~~YLRP 253 (684)
T PLN02734 174 DFCEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTSIGPSGLSVGYMRP 253 (684)
T ss_pred HHHHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccceeecccCcCCccceecc
Confidence 0011 23678999
Q ss_pred CChhHHHHHHHhhhccCC-CCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhh------------------
Q 015587 85 TSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSE------------------ 145 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~-~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~------------------ 145 (404)
+...+|.--|++.....+ .||+-..|+|+.||+|.+|+.||+|+|||+|.|++.|. ++++
T Consensus 254 ETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~Fv-~P~~k~h~~f~~v~~~~l~l~~ 332 (684)
T PLN02734 254 ETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFV-DPEDKSHPKFSEVADLEFLLFP 332 (684)
T ss_pred cccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcccceeeechhhhhhhheec-Ccccccccchhhhhhhhhhccc
Confidence 999999999999887655 79999999999999999999999999999999999853 3331
Q ss_pred -----------------HHH------H-HHHHHHHHHHHHHHhCCcc------------------------e--------
Q 015587 146 -----------------ADD------E-VLQILELYRRIYEEFLAVP------------------------V-------- 169 (404)
Q Consensus 146 -----------------a~~------e-~~~~~~~y~~~~~~l~~ip------------------------v-------- 169 (404)
|.+ | +.-.+.....++.++|.-| +
T Consensus 333 ~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E~~~~~GWiE 412 (684)
T PLN02734 333 REEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAEIECSYGWIE 412 (684)
T ss_pred HhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhccEeEEEecCCCcEE
Confidence 111 1 1112222235566676311 0
Q ss_pred EeeC--CC----------------------C-cC----------------------------------------------
Q 015587 170 IKGK--KS----------------------E-LE---------------------------------------------- 178 (404)
Q Consensus 170 ~~g~--~~----------------------~-~e---------------------------------------------- 178 (404)
..|. ++ + .+
T Consensus 413 ~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g~~fk~~~~~v~~~l~~~~~~~~~~~~~~l~~~ 492 (684)
T PLN02734 413 CVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVVVEALEAMNEKEAMEMKAKLESK 492 (684)
T ss_pred EEEeccccccchHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhhHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhc
Confidence 0110 00 0 00
Q ss_pred ------------cc-------------------c---------H---HHHHHHHHHcC-----CC--CCCCCCCCCCCce
Q 015587 179 ------------NS-------------------K---------F---VQIGVMVMVHG-----DD--KGLMLPPKVASVQ 208 (404)
Q Consensus 179 ------------kf-------------------~---------F---Rli~~Lie~~~-----d~--~Gl~lP~~iap~q 208 (404)
.| + | |+++++++++. |+ .|+.||+++||+|
T Consensus 493 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~iP~VIEPS~GIgRIl~AilE~s~~~~~~De~R~~L~~Pp~IAP~q 572 (684)
T PLN02734 493 GEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHSFYTRPGDEQLNVFRFPPLVAPIK 572 (684)
T ss_pred CceeeeecccCcceeechhheeeeeeeeeecCceecCceEecCccHHHHHHHHHHHHhccccCCCcceEEecCcccCCcE
Confidence 00 0 1 99999999865 66 8999999999999
Q ss_pred EEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCC
Q 015587 209 VIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNG 288 (404)
Q Consensus 209 V~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~ 288 (404)
|.|+|+..+ ++..++|.+|++.|+++|++|.+|+++ .++|+|+++|++.|+|++|+||. +|+|+|++|+++
T Consensus 573 VaIlPL~~~----ee~~~~A~eLa~~LR~~GIrVelDd~~-~SIGKRyrrADeiGIPf~ItIG~----dgtVTIRdRdsg 643 (684)
T PLN02734 573 CTVFPLVQN----QQLNAVAKVISKELTAAGISHKIDITG-TSIGKRYARTDELGVPFAVTVDS----DGSVTIRERDSK 643 (684)
T ss_pred EEEEEecCC----hHHHHHHHHHHHHHHhCCCEEEEECCC-CCHhHHHHHHHHcCCCEEEEECC----CCeEEEEECCCC
Confidence 999999752 457899999999999999999999987 59999999999999999999996 899999999999
Q ss_pred ceeeechhhHHHHHHHHHH
Q 015587 289 AKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 289 ~k~~v~~~el~~~i~~~l~ 307 (404)
+|..++++++++.|.++++
T Consensus 644 eQ~rV~ldeLv~~I~~li~ 662 (684)
T PLN02734 644 DQVRVPVEEVASVVKDLTD 662 (684)
T ss_pred ceEEeeHHHHHHHHHHHHc
Confidence 9999999999887766654
No 28
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=100.00 E-value=3.8e-38 Score=302.10 Aligned_cols=179 Identities=60% Similarity=1.134 Sum_probs=167.4
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+|+++++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+++||+++|.++||+++++++..+++++
T Consensus 15 ~~d~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~ 94 (261)
T cd00778 15 LIDYGPVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPL 94 (261)
T ss_pred CcccCCCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcE
Confidence 46778899999999999999999999999999999999999999999999977799999999999999998875556789
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+||||+|+.++.++++++.||++||+|+||+++|||+|.++++||+|+|||+|.|+|++|++++++.+|+..++++|.++
T Consensus 95 ~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i 174 (261)
T cd00778 95 ALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEF 174 (261)
T ss_pred EEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHhCCcceEeeCCCCcCc
Q 015587 161 YEEFLAVPVIKGKKSELEN 179 (404)
Q Consensus 161 ~~~l~~ipv~~g~~~~~ek 179 (404)
|++++.+|+.++.++.+++
T Consensus 175 ~~~llgl~~~~~~~~~~d~ 193 (261)
T cd00778 175 YEDLLAIPVVKGRKTEWEK 193 (261)
T ss_pred HHHhCCCeEEEecCCcccc
Confidence 9998448998887765553
No 29
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-36 Score=306.12 Aligned_cols=296 Identities=19% Similarity=0.252 Sum_probs=232.7
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHH--HhcCceEeccCcccChhhHhhhcccccCcccceEEEEec----------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEI--KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS---------- 71 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~--~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~---------- 71 (404)
|+.+.|+|||.|.|..+.++|.+.+++.| .+-+..++++|+|.|..+| +.|||++.|++-|-...+.
T Consensus 26 Ygg~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~-~aSGH~~~F~DpmV~CkkCk~ryRaD~Li 104 (539)
T PRK14894 26 YGGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVW-KYSGHEETFNDPLVDCRDCKMRWRADHIQ 104 (539)
T ss_pred cCCcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHe-eeccCCCCCCCceeECCCCCccccCccce
Confidence 67899999999999999999999999988 4667889999999999999 6799999998765433221
Q ss_pred ------CCCC-----------------C---CCceeccCCChhHHHHHHHhhhccCC-CCCeEEEeeeceeecCCCCCCC
Q 015587 72 ------GESD-----------------L---EVPIAIRPTSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVRWEFSNPTP 124 (404)
Q Consensus 72 ------g~~~-----------------l---~~~l~LRPt~e~~i~~~~~~~i~s~~-~lPlk~~q~~~vfR~E~~~~~g 124 (404)
|+.+ . .....|||+...++.-.|++.+...+ .||+-+.|+|+.||+|.+|+.|
T Consensus 105 ikCP~CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr~~ 184 (539)
T PRK14894 105 GVCPNCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPRNF 184 (539)
T ss_pred eeCCCCCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCCCc
Confidence 2111 1 13589999999999999999877555 7999999999999999999899
Q ss_pred ccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcc------------------------e---------Ee
Q 015587 125 FIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP------------------------V---------IK 171 (404)
Q Consensus 125 llR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ip------------------------v---------~~ 171 (404)
++|+|||.|.|++. ++++.++.+.....+..-..++.++|.-| + ..
T Consensus 185 l~R~REF~q~EiE~-Fv~P~~~~~~~~y~~~~~~~fl~~iGi~~~~lrfr~h~~~ElAHYa~~~~D~e~~~p~~Gw~E~~ 263 (539)
T PRK14894 185 LFRVREFEQMEIEY-FVMPGTDEEWHQRWLEARLAWWEQIGIPRSRITIYDVPPDELAHYSKRTFDLMYDYPNIGVQEIE 263 (539)
T ss_pred eeecccchhheEEE-EeCCCchHHHHHHHHHHHHHHHHHhCCCHHHeeeeecCcHHhhhhhhccEEEEEECCCCCeEEEE
Confidence 99999999999998 55555555554445554557777787311 0 00
Q ss_pred e--CCCC---------c---------------------------Ccc-------cH---HHHHHHHHHc-C-C-------
Q 015587 172 G--KKSE---------L---------------------------ENS-------KF---VQIGVMVMVH-G-D------- 194 (404)
Q Consensus 172 g--~~~~---------~---------------------------ekf-------~F---Rli~~Lie~~-~-d------- 194 (404)
| .+++ . ++| .| |++.++++.. . +
T Consensus 264 Gia~RtdyDL~~H~~~s~~~~l~~~~~~~~~s~~~l~~~~~~~~~~~iP~ViEpS~G~dR~~~a~l~~~y~~~~~~~~~~ 343 (539)
T PRK14894 264 GIANRTDYDLGSHSKDQEQLNLTARVNPNEDSTARLTYFDQASGRHVVPYVIEPSAGVGRCMLAVMCEGYAEELTKAIPG 343 (539)
T ss_pred EeecccccCHHHHhhhcccCCceeeeccccCCCceEEEEeccCCcccCCceeecCcchhHHHHHHHHHHHhhhhhccccc
Confidence 1 0110 0 000 11 7776665421 1 0
Q ss_pred -----------------------------------------------------------------------------CCC
Q 015587 195 -----------------------------------------------------------------------------DKG 197 (404)
Q Consensus 195 -----------------------------------------------------------------------------~~G 197 (404)
+..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~r 423 (539)
T PRK14894 344 EKLAAVGDALEAFLKSVGRSEKLAGEARDAILARGEALLQALPERLPEVEQLLAMPGADQIELGKKLRGQAQPLIDEHYR 423 (539)
T ss_pred ccccccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcccc
Confidence 123
Q ss_pred --CCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCC-EEEEeCCCCCChhHHHHHHHHcCCCEEEEE----
Q 015587 198 --LMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGI-RANSDFRDNYSPGWKYSHWEMKGVPLRIEI---- 270 (404)
Q Consensus 198 --l~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Gi-rv~~D~~~~~s~g~k~~~ae~~GvP~~iiI---- 270 (404)
+.||+|+||+||.|+|+.++. +++.++|.+|++.|+++|+ ||.+|++ + ++|+|+++++..|+||+|+|
T Consensus 424 gvLplp~wLAPvQVaVLPLs~~~---~~l~eyAkeI~~~L~~~Gi~rv~~Dds-e-sIGKKyRraDeiGiPy~ITVD~~T 498 (539)
T PRK14894 424 TVLRLKPRLAPIKVAVFPLKRNH---EGLVATAKAVRRQLQVGGRMRTVYDDT-G-AIGKLYRRQDEIGTPFCITVDFDT 498 (539)
T ss_pred eecCCCcCCCCceEEEEeccccc---cchHHHHHHHHHHHHHCCCceEEEcCC-C-CHhHHHHhhhccCCCEEEEEeccc
Confidence 345699999999999998532 3477999999999999998 9999994 3 89999999999999999999
Q ss_pred ---CccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 271 ---GPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 271 ---G~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
|++|.++|+||||+|++++|..++++++++.|.+.+
T Consensus 499 l~dGdkE~e~gTVTVR~RDs~eQ~rV~ideli~~L~~~~ 537 (539)
T PRK14894 499 IGQGKDPALAGTVTVRDRDTMAQERVPISELEAYLRDRV 537 (539)
T ss_pred cccccchhhcCeEEEEEeCCCeEEEEEHHHHHHHHHHHh
Confidence 999999999999999999999999999999887664
No 30
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=4.7e-38 Score=300.49 Aligned_cols=162 Identities=20% Similarity=0.368 Sum_probs=153.7
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
.+++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++|. ++||++.|.+|||+++|+++ ++++|||
T Consensus 18 ~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~-~sg~~~~~~~emy~~~d~~~----~~l~LrP 92 (255)
T cd00779 18 QTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWK-ESGRWDAYGPELLRLKDRHG----KEFLLGP 92 (255)
T ss_pred cCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHH-hcCCccccCcccEEEecCCC----CeEEEec
Confidence 478999999999999999999999999999999999999999999994 57999999999999999887 7899999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
|+|+.++.++++++.||++||+|+|||++|||+|.+|++||+|+|||+|.|+|++|.+.++|++|+..++.+|.++|+.|
T Consensus 93 t~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~L 172 (255)
T cd00779 93 THEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRL 172 (255)
T ss_pred CCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999998
Q ss_pred CCcceEee
Q 015587 165 LAVPVIKG 172 (404)
Q Consensus 165 ~~ipv~~g 172 (404)
| +|+.++
T Consensus 173 g-l~~~~~ 179 (255)
T cd00779 173 G-LPFVKV 179 (255)
T ss_pred C-CcEEEE
Confidence 7 687543
No 31
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-35 Score=302.02 Aligned_cols=275 Identities=15% Similarity=0.193 Sum_probs=221.4
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|++..+++|+.||+|..+.+++.|++.+++.|+++||++|.||+|++.++|....+..+...++||.|+|++| +.+
T Consensus 1 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g----~~l 76 (423)
T PRK12420 1 MMEMRNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGK----RDL 76 (423)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCC----cee
Confidence 6788999999999999999999999999999999999999999999999997654555667789999999988 899
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+|||+.|++++++++... ..++|+|+||+|+|||+| +++.| |.|||+|.+++++|.+...||+|++.++ .++
T Consensus 77 ~LRpD~T~~iaR~va~~~--~~~~p~r~~y~g~vfR~~-~~~~g--r~rE~~Q~g~EiiG~~~~~adaEvi~la---~~~ 148 (423)
T PRK12420 77 ALRYDLTIPFAKVVAMNP--NIRLPFKRYEIGKVFRDG-PIKQG--RFREFIQCDVDIVGVESVMAEAELMSMA---FEL 148 (423)
T ss_pred cccccccHHHHHHHHhCc--CCCCCeeEEEEcceECCC-CCCCC--ccceeEECCeeeECCCCCcccHHHHHHH---HHH
Confidence 999999999999988752 246899999999999999 56889 9999999999999999999999999988 477
Q ss_pred HHHhCCcceE--ee-------------CCCCc--------Ccc-------------------------------------
Q 015587 161 YEEFLAVPVI--KG-------------KKSEL--------ENS------------------------------------- 180 (404)
Q Consensus 161 ~~~l~~ipv~--~g-------------~~~~~--------ekf------------------------------------- 180 (404)
++.+|. .+. +| ...+. +++
T Consensus 149 l~~lg~-~~~i~l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~~~~~~ 227 (423)
T PRK12420 149 FRRLNL-EVTIQYNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSI 227 (423)
T ss_pred HHHCCC-CEEEEEcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHHHHhccChhhH
Confidence 777763 321 11 11000 000
Q ss_pred ---------------------------------------------c------H-----------------HHHHHHHHHc
Q 015587 181 ---------------------------------------------K------F-----------------VQIGVMVMVH 192 (404)
Q Consensus 181 ---------------------------------------------~------F-----------------Rli~~Lie~~ 192 (404)
+ | |.= .|++.+
T Consensus 228 ~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~~~~~~i~~GGRYD-~L~~~f 306 (423)
T PRK12420 228 ADFKEAFNNPLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYD-NIIGAF 306 (423)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecCCCccccccCCccHH-HHHHHh
Confidence 0 0 221 133333
Q ss_pred CC---C---CCCC---------C---CCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhh-CCCEEEEeCCCCCChh
Q 015587 193 GD---D---KGLM---------L---PPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCE-AGIRANSDFRDNYSPG 253 (404)
Q Consensus 193 ~d---~---~Gl~---------l---P~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~-~Girv~~D~~~~~s~g 253 (404)
+. + -|+. + ...-.|.||+|+|++. . ..+.++++.||+ +|++|++|.++ .+++
T Consensus 307 ~~~~~~~pAvGfa~~~~~l~~~l~~~~~~~~~~dvlI~~~~~------~--~~a~~ia~~Lr~~~Gi~ve~~~~~-~~l~ 377 (423)
T PRK12420 307 RGDDMNYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGT------E--LQCLQIAQQLRSTTGLKVELELAG-RKLK 377 (423)
T ss_pred CCCCCCCCceeEEEcHHHHHHHHHhcCCCCCCceEEEEEcCC------H--HHHHHHHHHHHhhcCCeEEEecCC-cCHH
Confidence 11 0 1110 0 0111578999999752 1 258899999999 99999999987 5999
Q ss_pred HHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhH
Q 015587 254 WKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSL 298 (404)
Q Consensus 254 ~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el 298 (404)
+++++|.+.|+|+.++||++|.++|+|+|+++.++++..++++++
T Consensus 378 ~~i~~A~~~g~~~iviig~~e~~~~~v~vr~~~~~~~~~v~~~~~ 422 (423)
T PRK12420 378 KALNYANKENIPYVLIIGEEEVSTGTVMLRNMKEGSEVKVPLSSL 422 (423)
T ss_pred HHHHHHHHcCCCEEEEEChhHHhcCeEEEEECCCCceeeeeHHHc
Confidence 999999999999999999999999999999999999999998775
No 32
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=2.9e-36 Score=294.41 Aligned_cols=163 Identities=20% Similarity=0.284 Sum_probs=147.7
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+.+++.|++++++.++++||++|.||+|++.++|.+ +||++.|.++||++++ ++ +.++|||
T Consensus 17 ~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~~~-~~----~~l~LRP 90 (298)
T cd00771 17 EAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWET-SGHWDHYRENMFPFEE-ED----EEYGLKP 90 (298)
T ss_pred CCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhh-CCCccccccCceEecc-CC----ceEEEcc
Confidence 4689999999999999999999999999999999999999999999976 8999999999999965 33 7899999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+|+++++++++++.||++||+|++|+|+|||+|.++ ++||+|+|||+|.|+|++ ++++++++|+..+++++.++|++
T Consensus 91 ~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~-~~~e~~~~e~~e~l~~~~~~l~~ 169 (298)
T cd00771 91 MNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIF-CTPDQIKEEIKGVLDLIKEVYSD 169 (298)
T ss_pred cCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEE-eCCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999775 579999999999999997 55688999999999999999999
Q ss_pred hCC--cceEeeCC
Q 015587 164 FLA--VPVIKGKK 174 (404)
Q Consensus 164 l~~--ipv~~g~~ 174 (404)
+|. .++.+|.+
T Consensus 170 lgl~~~~i~l~~~ 182 (298)
T cd00771 170 FGFFDYKVELSTR 182 (298)
T ss_pred cCCCcEEEEEEcC
Confidence 974 23444443
No 33
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=6.8e-35 Score=308.52 Aligned_cols=276 Identities=16% Similarity=0.151 Sum_probs=221.7
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceecc
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LR 83 (404)
+..++||+||+|..+.+|++|++.+++.|+++||++|.||+||+.++|....|.. .++||.|.|++| +.++||
T Consensus 327 ~k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged---~k~mY~f~D~gG----r~LaLR 399 (763)
T PLN02972 327 PKIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGED---SKLIYDLADQGG----ELCSLR 399 (763)
T ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcc---hhheEEEECCCC----CEEEeC
Confidence 4789999999999999999999999999999999999999999999997655532 368999999988 899999
Q ss_pred CCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC-ChhhHHHHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~e~~~~~~~y~~~~~ 162 (404)
|+.|++++++++.+. ..|+|+||+|+|||+| +||+| |+|||+|.+++++|. ++..+|+|++.++. ++++
T Consensus 400 PDlTvPiAR~vA~n~----~~p~KrYyiG~VFR~e-~pqkG--R~REF~Q~G~EIIG~~~~~~aDAEVI~La~---E~L~ 469 (763)
T PLN02972 400 YDLTVPFARYVAMNG----ITSFKRYQIAKVYRRD-NPSKG--RYREFYQCDFDIAGVYEPMGPDFEIIKVLT---ELLD 469 (763)
T ss_pred CCChHHHHHHHHhCC----CCcceEEEeccEEecC-CCCCC--CCccceEEeEEEEcCCCcchhhHHHHHHHH---HHHH
Confidence 999999999988652 3489999999999999 57999 999999999999997 55578999998883 6667
Q ss_pred HhCCcce--Eee-------------CCC----------------Cc-------------------------------C--
Q 015587 163 EFLAVPV--IKG-------------KKS----------------EL-------------------------------E-- 178 (404)
Q Consensus 163 ~l~~ipv--~~g-------------~~~----------------~~-------------------------------e-- 178 (404)
.+|.-.+ .+| ... .+ .
T Consensus 470 ~LGi~df~I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~ev 549 (763)
T PLN02972 470 ELDIGTYEVKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLEL 549 (763)
T ss_pred hCCCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHH
Confidence 6653111 110 000 00 0
Q ss_pred ---------cc---------------------------------------c-----------------------------
Q 015587 179 ---------NS---------------------------------------K----------------------------- 181 (404)
Q Consensus 179 ---------kf---------------------------------------~----------------------------- 181 (404)
.+ +
T Consensus 550 Ld~L~~~~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~~~~g~~~gsIagGGRYD~Lv 629 (763)
T PLN02972 550 LSKLRQEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVFKGAQVGSIAAGGRYDNLV 629 (763)
T ss_pred HHHHHHhhHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEEEEcCCccceeeecCCchhHH
Confidence 00 0
Q ss_pred --H---------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEE
Q 015587 182 --F---------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 244 (404)
Q Consensus 182 --F---------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~ 244 (404)
| |++.+|.+. +......++ ..+.+|+|++.+ +.....+.++++.||++||++++
T Consensus 630 ~~FgG~~vPAVGFSiGIERL~~~L~~~-~~~~~~~~~--~~~~dVlV~s~g------~~~l~~alkia~~LR~aGI~aE~ 700 (763)
T PLN02972 630 GMFSGKQVPAVGVSLGIERVFAIMEQQ-EEEKSQVIR--PTETEVLVSIIG------DDKLALAAELVSELWNAGIKAEY 700 (763)
T ss_pred HhcCCCCCCEEEEEecHHHHHHHHHHc-ccCCCCCCC--CCCCcEEEEEeC------HHHHHHHHHHHHHHHHCCCEEEE
Confidence 0 777655442 110000111 234689999876 35677899999999999999998
Q ss_pred eCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 245 D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
+. . .++++++.+|++.|+|+.++||++|+++|+|+||++.++++..++++++++.+++.|.
T Consensus 701 ~~-~-~kl~kq~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tgeq~~V~~delv~~l~~~l~ 761 (763)
T PLN02972 701 KV-S-TRKAKHLKRAKESGIPWMVLVGEKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAELL 761 (763)
T ss_pred eC-C-CCHHHHHHHHHHCCCCEEEEECchHHhCCeEEEEECCCCcceEeeHHHHHHHHHHHhc
Confidence 76 3 4899999999999999999999999999999999999999999999999988876653
No 34
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-35 Score=293.52 Aligned_cols=297 Identities=22% Similarity=0.365 Sum_probs=236.5
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHh--cCceEeccCcccChhhHhhhcccccCcccceEEEEecC---------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKK--MKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG--------- 72 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~--~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g--------- 72 (404)
|+.++|+|||.|.|..+.++|.+.|++.|-. -|+.+|++|++.|.++| +.|||++.|.+-|-..++.|
T Consensus 26 YGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~-kASGHvd~FsDplv~c~~c~~~yRADHLi 104 (558)
T COG0423 26 YGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVW-KASGHVDKFSDPLVECKKCGERYRADHLI 104 (558)
T ss_pred ecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHh-hhcCcccccccceeeccccchhhhhhHHH
Confidence 6889999999999999999999999999944 68999999999999999 67999999998765443321
Q ss_pred ----------C---------------------CCC------------------CCceeccCCChhHHHHHHHhhhccCC-
Q 015587 73 ----------E---------------------SDL------------------EVPIAIRPTSETVMYPYFSKWIRGHR- 102 (404)
Q Consensus 73 ----------~---------------------~~l------------------~~~l~LRPt~e~~i~~~~~~~i~s~~- 102 (404)
+ ++| +....|||+...+|.--|++..++.|
T Consensus 105 Ee~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r~ 184 (558)
T COG0423 105 EEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFARN 184 (558)
T ss_pred HHHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccchhhhhhHHHHHHhcc
Confidence 0 011 25788999999999888998877555
Q ss_pred CCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChh-------------------hHHHH----------H---
Q 015587 103 DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKS-------------------EADDE----------V--- 150 (404)
Q Consensus 103 ~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~-------------------~a~~e----------~--- 150 (404)
.||+-+.|+|+.||+|.+|..|++|+|||+|+|++.|..... ++..+ +
T Consensus 185 klPFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n 264 (558)
T COG0423 185 KLPFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVEN 264 (558)
T ss_pred CCCeEEEeechhhccccCcccceeehhhhhhhheeeEECCCcccCcchhhhhhhhcccccHHHhhhhhhhhhhhcceeec
Confidence 699999999999999999999999999999999998544333 22222 1
Q ss_pred --H-HHHHHHHHHHHHhCCcc------------------------e---------Eee--CCC-----------------
Q 015587 151 --L-QILELYRRIYEEFLAVP------------------------V---------IKG--KKS----------------- 175 (404)
Q Consensus 151 --~-~~~~~y~~~~~~l~~ip------------------------v---------~~g--~~~----------------- 175 (404)
. ..+.....++.++|.-+ + ..| .++
T Consensus 265 ~~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~gWiE~~GiAdRtdYDL~~H~k~s~~~l~v 344 (558)
T COG0423 265 ETLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFGGWIELVGIADRTDYDLSRHSKFSGEDLTV 344 (558)
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHhhhhhcChHHHhhhhhcceeEEEecCCCceEEEEEeecccccchhhhhhhcccccee
Confidence 1 22233345666776311 0 011 000
Q ss_pred ------------------------Cc-----------------------------------------Ccc-------cH-
Q 015587 176 ------------------------EL-----------------------------------------ENS-------KF- 182 (404)
Q Consensus 176 ------------------------~~-----------------------------------------ekf-------~F- 182 (404)
+. ++| .|
T Consensus 345 ~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~iP~VIEPSfG 424 (558)
T COG0423 345 FREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSKDLVIIEEVEKVTGEKYIPHVIEPSFG 424 (558)
T ss_pred eeccCCcceeeeeecccchhhcChhhhhhHHHHhhhhhhhhhhhhccCccccccchhheeeeeeccCceecCceeccCCC
Confidence 00 001 12
Q ss_pred --HHHHHHHHHc-CCCCC------CCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChh
Q 015587 183 --VQIGVMVMVH-GDDKG------LMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPG 253 (404)
Q Consensus 183 --Rli~~Lie~~-~d~~G------l~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g 253 (404)
|++-++++.- ..+.+ |.|||++||++|+|+|+..+ +++.+.|.+|.+.|++.|+.|.+|+++ ++|
T Consensus 425 idRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k----~~l~~~a~~i~~~L~~~~~~v~yDdsG--sIG 498 (558)
T COG0423 425 IDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKK----DELVEIAKEIFEKLRELGFNVDYDDSG--SIG 498 (558)
T ss_pred chHHHHHHHHHhhcccccccceeEEecCcccCceEEEEEeeecc----cchhHHHHHHHHHHHhcCceEEecCCC--cHh
Confidence 9888877743 22222 67999999999999999865 468899999999999999999999986 899
Q ss_pred HHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 254 WKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 254 ~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
++++.++..|+|++|.|..+.++.++||||+|||.+|..|++++|++.|.+++.
T Consensus 499 rRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el~~~l~~~~~ 552 (558)
T COG0423 499 RRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEELADYLRELIK 552 (558)
T ss_pred hhhhhccccCCceEEEecCCcccCCcEEEeecCchheeeeeHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999988775
No 35
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=3.6e-35 Score=286.39 Aligned_cols=191 Identities=16% Similarity=0.179 Sum_probs=167.1
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
.+|++.|+|.|++++++|++++++.+.+.||++|.||.|++.++|+ ++||++.|.++||++.+ ++++|+||+
T Consensus 41 G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~-~sg~~~~~~~~~f~v~~-------~~~~L~pt~ 112 (297)
T cd00770 41 GSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVME-GTGQLPKFDEQLYKVEG-------EDLYLIATA 112 (297)
T ss_pred CCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHh-hcCcCccChhcccEecC-------CCEEEeecC
Confidence 4569999999999999999999999999999999999999999995 59999999999999964 679999999
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCC----CCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNP----TPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~----~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~ 162 (404)
|+.++.++++++.||++||+|++|+|+|||+|.+|. +||+|+|||+|.|+|+ +++++++++++..++++|.++|+
T Consensus 113 e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~~~~~~~~~l~~~~~i~~ 191 (297)
T cd00770 113 EVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEESWEELEELISNAEEILQ 191 (297)
T ss_pred CHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998753 7999999999999998 66669999999999999999999
Q ss_pred HhCCcceEeeCCCCc-------Ccc----------------------c-------------------H------------
Q 015587 163 EFLAVPVIKGKKSEL-------ENS----------------------K-------------------F------------ 182 (404)
Q Consensus 163 ~l~~ipv~~g~~~~~-------ekf----------------------~-------------------F------------ 182 (404)
+|| +|+.....+.. .+| + |
T Consensus 192 ~lg-l~~~~~~~~~~dl~~~~~~~~d~e~~~p~~~~~~e~~s~s~~~d~~s~r~~i~y~~~~~~~~~~~~~~~~~~~~~~ 270 (297)
T cd00770 192 ELG-LPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDFQARRLNIRYRDKKDGKKQYVHTLNGTALATP 270 (297)
T ss_pred HcC-CcEEEEEccCccccCchhhheeeheecCCCCCeEEEEEccCccChhhhhcCcEEecCCCCCeeeeeEecccchHHH
Confidence 986 67543221111 111 1 1
Q ss_pred HHHHHHHHHcCCCCCCCCCCC-CCCc
Q 015587 183 VQIGVMVMVHGDDKGLMLPPK-VASV 207 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~-iap~ 207 (404)
|+|++|+|+|+|++|+++||. ++|+
T Consensus 271 R~l~alle~~~~~~g~v~~P~~l~py 296 (297)
T cd00770 271 RTIVAILENYQTEDGSVVIPEVLRPY 296 (297)
T ss_pred HHHHHHHHhCcCCCCcEeCchhhccc
Confidence 999999999999999999864 5554
No 36
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=2.3e-33 Score=284.47 Aligned_cols=260 Identities=17% Similarity=0.196 Sum_probs=214.0
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcc-cccCcccceEEEEecCCCCCCCceecc
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKD-HIEGFAPEVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g-~~~~f~~e~~~~~~~g~~~l~~~l~LR 83 (404)
.+++|+.||+|.++.+++.|++.+++.|.++||++|.||+|++.++|.+..| +.+.+.++||+|.|.+| +.++||
T Consensus 1 ~~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g----~~l~LR 76 (397)
T TIGR00442 1 QAPRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGG----RSLTLR 76 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCC----CEEeec
Confidence 3689999999999999999999999999999999999999999999977654 34457799999999887 899999
Q ss_pred CCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+.|+.++++++.... ++++|+|+||+|+|||+| +++.| |.|||+|.|+|++|.+...+|+|++.++ .++++.
T Consensus 77 pD~T~~iaR~~~~~~~-~~~~p~r~~y~g~vfR~e-~~~~g--r~ref~Q~g~eiig~~~~~~d~E~i~l~---~e~l~~ 149 (397)
T TIGR00442 77 PEGTAPVARAVIENKL-LLPKPFKLYYIGPMFRYE-RPQKG--RYRQFHQFGVEVIGSDSPLADAEIIALA---AEILKE 149 (397)
T ss_pred CCCcHHHHHHHHhccc-ccCCCeEEEEEcCeecCC-CCCCC--cccceEEcCeeeeCCCCHHHHHHHHHHH---HHHHHH
Confidence 9999999999887643 468999999999999999 45778 9999999999999999999999988877 477777
Q ss_pred hCCcce--Eee--------------------C-CC--Cc------------------C---cc-----------------
Q 015587 164 FLAVPV--IKG--------------------K-KS--EL------------------E---NS----------------- 180 (404)
Q Consensus 164 l~~ipv--~~g--------------------~-~~--~~------------------e---kf----------------- 180 (404)
+|.-.+ .+| . +. .. + .|
T Consensus 150 lg~~~~~i~i~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (397)
T TIGR00442 150 LGIKDFTLEINSLGILEGRLEYREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLKEAPKILDFLDEESRA 229 (397)
T ss_pred cCCCceEEEecCcccHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHhcCHHHHHHhhHHHHH
Confidence 763111 111 0 00 00 0 00
Q ss_pred ----------------------------------------------------------cH---------------HHHHH
Q 015587 181 ----------------------------------------------------------KF---------------VQIGV 187 (404)
Q Consensus 181 ----------------------------------------------------------~F---------------Rli~~ 187 (404)
.| |++.+
T Consensus 230 ~l~~l~~~l~~~~~~i~~dl~~~r~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~avGfs~~~~~l~~~ 309 (397)
T TIGR00442 230 HFEELKELLDALGIPYKIDPSLVRGLDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGGPPTPAVGFAIGIERLLLL 309 (397)
T ss_pred HHHHHHHHHHHcCCCEEECCccccCchhhcceEEEEEECCCCccceeeeccchHHHHHHhCCCCCceEEeeecHHHHHHH
Confidence 00 66655
Q ss_pred HHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEE
Q 015587 188 MVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLR 267 (404)
Q Consensus 188 Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~ 267 (404)
|.+. | ..|++.+|.+|+|++++ ++...++.++++.||++|++|+++... .++++++++|+..|+|++
T Consensus 310 l~~~-----~-~~~~~~~~~~vlV~~~~------~~~~~~~~~i~~~Lr~~gi~v~~~~~~-~~l~k~~~~a~~~g~~~~ 376 (397)
T TIGR00442 310 LEEL-----G-LEPPEESSPDVYVVPLG------EEAELEALKLAQKLRKAGIRVEVDLGG-RKLKKQLKYADKLGARFA 376 (397)
T ss_pred HHhc-----C-CCCCCCCCCcEEEEEeC------HHHHHHHHHHHHHHHhCCCeEEEeCCC-CCHHHHHHHHHHcCCCEE
Confidence 5441 2 24555678899999876 356778999999999999999999876 689999999999999999
Q ss_pred EEECccccCCCeEEEEECCCC
Q 015587 268 IEIGPKDLANDQVRAVRRDNG 288 (404)
Q Consensus 268 iiIG~~E~~~~~V~v~~r~~~ 288 (404)
|+||++|++.++|+||++.+|
T Consensus 377 i~ig~~e~~~~~v~vrnl~~~ 397 (397)
T TIGR00442 377 VILGEDELANGTVTLKDLETG 397 (397)
T ss_pred EEEChhHHhCCeEEEEeCCCC
Confidence 999999999999999999875
No 37
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=2.6e-33 Score=284.42 Aligned_cols=192 Identities=17% Similarity=0.218 Sum_probs=169.1
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
..+|++.|+|.|++++++|++++.+.+.+.||++|.||.|.+.++|. ++||+++|.++||++++ +.++|+||
T Consensus 161 ~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~-~~G~~~~f~~~~y~i~~-------~~~~L~pT 232 (418)
T TIGR00414 161 TGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLD-GTGQLPKFEEDIFKLED-------TDLYLIPT 232 (418)
T ss_pred CCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHh-hcCccccccccceEecC-------CCEEEEeC
Confidence 35669999999999999999999999999999999999999999994 69999999999999963 56999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC----CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN----PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~----~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
+|++++.++++++.||++||+|++|+++|||+|.++ ++||+|+|||+|.|+|+ +++++++.+++..+++.|.++|
T Consensus 233 sE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~-f~~~e~s~~~~~~~~~~~~~i~ 311 (418)
T TIGR00414 233 AEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVK-FCKPEESAEELEEMTSDAEQIL 311 (418)
T ss_pred CcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEE-EcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999853 67999999999999987 7788999999999999999999
Q ss_pred HHhCCcceEeeCCCCc-------Ccc----------------------cH------------------------------
Q 015587 162 EEFLAVPVIKGKKSEL-------ENS----------------------KF------------------------------ 182 (404)
Q Consensus 162 ~~l~~ipv~~g~~~~~-------ekf----------------------~F------------------------------ 182 (404)
+.|| +|+.+...+.. .+| +|
T Consensus 312 ~~Lg-lp~r~v~~~t~dlg~~a~~~ydiE~w~p~~~~~~ev~s~sn~~d~qsrr~~i~y~~~~~~~~~~vh~ln~~~~ai 390 (418)
T TIGR00414 312 QELE-LPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCTDFQARRLNIRYKDKNKGKNKYVHTLNGTALAI 390 (418)
T ss_pred HHcC-CceEEEecCccccccCHhhhhhHHHhCCCcCceEEEEEEcCcchHhHHhCCcEEECCCCCceEEEEeecCcchHH
Confidence 9886 78643211111 111 11
Q ss_pred -HHHHHHHHHcCCCCCCC-CCCCCCCc
Q 015587 183 -VQIGVMVMVHGDDKGLM-LPPKVASV 207 (404)
Q Consensus 183 -Rli~~Lie~~~d~~Gl~-lP~~iap~ 207 (404)
|+|++|+|+|+|++|.+ ||..++|+
T Consensus 391 ~R~i~Aile~~~~~~G~i~iP~~l~py 417 (418)
T TIGR00414 391 GRTIVAILENYQTEDGSVEIPEVLRKY 417 (418)
T ss_pred HHHHHHHHHHccCCCCCEeCChhcccc
Confidence 99999999999999976 99999886
No 38
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-33 Score=285.44 Aligned_cols=192 Identities=14% Similarity=0.160 Sum_probs=169.5
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHH-hcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~-~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
.+|++.|+|.|++++++|++++.+.+. +.||++|.||.|.+.++|. ++||++.|.++||++.+ ++++|+||
T Consensus 159 G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~-~~G~~~~f~~~ly~i~~-------~~~~L~pT 230 (425)
T PRK05431 159 GSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMY-GTGQLPKFEEDLYKIED-------DDLYLIPT 230 (425)
T ss_pred CceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHh-hcCccccchhhceEecC-------CCEEEEeC
Confidence 556999999999999999999988887 9999999999999999995 58999999999999963 67999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC----CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
+|++++.++++++.||++||+|++++++|||+|.. +++||+|+|||+|.|+|+ +++++++++++..++++|.++|
T Consensus 231 sE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~-f~~~e~s~~~~~~~l~~~~~i~ 309 (425)
T PRK05431 231 AEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVK-FTKPEDSYAELEELTANAEEIL 309 (425)
T ss_pred CcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEE-EECHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999984 368999999999999997 7777999999999999999999
Q ss_pred HHhCCcceEeeCCCCc-------Ccc----------------------c-------------------H-----------
Q 015587 162 EEFLAVPVIKGKKSEL-------ENS----------------------K-------------------F----------- 182 (404)
Q Consensus 162 ~~l~~ipv~~g~~~~~-------ekf----------------------~-------------------F----------- 182 (404)
+.|| +|+.+...+.. .+| + |
T Consensus 310 ~~Lg-lpyr~v~~~s~dlg~~a~~~~DiE~w~p~~~~~~ev~s~snc~d~qsrr~~i~~~~~~~~~~~~~htln~t~~a~ 388 (425)
T PRK05431 310 QKLE-LPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDFQARRANIRYRDEGDGKPELVHTLNGSGLAV 388 (425)
T ss_pred HHcC-CcEEEEEcCCcccCCchHheecHHHhCcccCCeeEEEEecCccchhhhhcCcEEecCCCCceeEEEEeCCchhhH
Confidence 9886 78644221111 111 1 1
Q ss_pred -HHHHHHHHHcCCCCC-CCCCCCCCCce
Q 015587 183 -VQIGVMVMVHGDDKG-LMLPPKVASVQ 208 (404)
Q Consensus 183 -Rli~~Lie~~~d~~G-l~lP~~iap~q 208 (404)
|+|++|+|+|+|++| ++||+.++|+.
T Consensus 389 ~R~l~ailE~~q~~~g~i~iP~~l~py~ 416 (425)
T PRK05431 389 GRTLVAILENYQQADGSVTIPEVLRPYM 416 (425)
T ss_pred HHHHHHHHHHCCCCCCcEECChhhhccc
Confidence 999999999999999 99999999974
No 39
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-33 Score=269.04 Aligned_cols=279 Identities=18% Similarity=0.176 Sum_probs=227.3
Q ss_pred ccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceec
Q 015587 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAI 82 (404)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~L 82 (404)
...++|||+||-|..+.++++|.+.+.+.|++||+..|+||+||-.++|..+.|.- ++-+|.+.|+|| +.++|
T Consensus 59 ~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEd---skLiYdlkDQGG----El~SL 131 (518)
T KOG1936|consen 59 SLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGED---SKLIYDLKDQGG----ELCSL 131 (518)
T ss_pred eecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccc---cceeEehhhcCC----cEEEe
Confidence 35789999999999999999999999999999999999999999999998887742 388999999999 99999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC--CCCccccceeEEeceeeec-CChhhHHHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN--PTPFIRSREFLWQEGHTAF-ATKSEADDEVLQILELYRR 159 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~--~~gllR~REF~q~e~~~~~-~~~~~a~~e~~~~~~~y~~ 159 (404)
||+.|++++++.+.+ .. --++.||++.|||++ .| ++| |+|||+|+|.+++| .++--+|+|...++ .+
T Consensus 132 RYDLTVPfARylAmN-ki---~sikRy~iAkVyRRd-~P~mtrG--R~REFYQcDFDIAG~~d~M~pdaE~lkiv---~e 201 (518)
T KOG1936|consen 132 RYDLTVPFARYLAMN-KI---TSIKRYHIAKVYRRD-QPAMTRG--RYREFYQCDFDIAGQFDPMIPDAECLKIV---VE 201 (518)
T ss_pred ecccccHHHHHHHHc-cc---ccceeeeEEEEEecc-Cchhhch--hhhhhhccCccccccCCCCCchHHHHHHH---HH
Confidence 999999999988766 22 348999999999999 46 789 99999999999999 67888999998887 48
Q ss_pred HHHHhCCcceE---------------eeC----------------CCCcCcc----------------------------
Q 015587 160 IYEEFLAVPVI---------------KGK----------------KSELENS---------------------------- 180 (404)
Q Consensus 160 ~~~~l~~ipv~---------------~g~----------------~~~~ekf---------------------------- 180 (404)
+++.|++-.+. .|. |.+|+..
T Consensus 202 ~L~~l~Igd~~iKvNhRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~ 281 (518)
T KOG1936|consen 202 ILSRLGIGDYGIKVNHRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLD 281 (518)
T ss_pred HHhhcCccceEEEecHHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHH
Confidence 88877642221 011 1111100
Q ss_pred --------------------------------------------------------------------------------
Q 015587 181 -------------------------------------------------------------------------------- 180 (404)
Q Consensus 181 -------------------------------------------------------------------------------- 180 (404)
T Consensus 282 eL~e~l~~d~~l~~n~~a~eal~dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~ 361 (518)
T KOG1936|consen 282 ELLEKLIADPKLSQNEAAKEALADLKQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGS 361 (518)
T ss_pred HHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhcccc
Confidence
Q ss_pred --------------------cH-----------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhh
Q 015587 181 --------------------KF-----------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQG 223 (404)
Q Consensus 181 --------------------~F-----------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~ 223 (404)
.| |+...|.+... ..|..+- -..+||+|...+. .
T Consensus 362 ~e~~~vGSvaaGGRYDnLv~mf~~k~~~vPcvG~S~GVeRiFsile~r~~-~~~~~iR--~t~t~V~V~~~~k------~ 432 (518)
T KOG1936|consen 362 TEPGGVGSVAAGGRYDNLVGMFDKKGDKVPCVGQSVGVERIFSILEQRAA-TVATKIR--TTETQVYVAAAGK------N 432 (518)
T ss_pred ccCCCccccccCcchhhHHHHhccccCcCCccceeehHhHHHHHHHHHHH-hhhhccc--cCceEEEEEecCC------c
Confidence 00 66655544321 1122222 2357888887663 3
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHH
Q 015587 224 IFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303 (404)
Q Consensus 224 ~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~ 303 (404)
......++.+.||++||..++-...+.++-+||+++++.|||++++||.+|++.|.|.|++..+++...++.++++..++
T Consensus 433 ~l~eR~k~v~~Lw~agI~aE~~yk~~~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~re~~~v~~e~~v~~l~ 512 (518)
T KOG1936|consen 433 LLFERLKVVNALWDAGIKAEYLYKANPKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNVGTREEVLVKREQFVSELK 512 (518)
T ss_pred hHHHHHHHHHHHHhcCcchhhhhhcCccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEecccccceeccHHHHHHHHH
Confidence 57788899999999999999887766789999999999999999999999999999999999999999999999999998
Q ss_pred HHHH
Q 015587 304 ELLE 307 (404)
Q Consensus 304 ~~l~ 307 (404)
+++.
T Consensus 513 ~~l~ 516 (518)
T KOG1936|consen 513 DLLS 516 (518)
T ss_pred HHhc
Confidence 8775
No 40
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=100.00 E-value=2.5e-32 Score=276.28 Aligned_cols=166 Identities=21% Similarity=0.349 Sum_probs=149.7
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHH-HHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCC------
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFD-AEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGE------ 73 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~-~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~------ 73 (404)
|+++.+++|+++|.|+|++||+.|++++. ..+++.||+++++|.|+|.+.|.+ +||+++|.++||++++.++
T Consensus 206 lidk~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k-~ghl~gF~~e~y~Vt~~~~d~d~~~ 284 (520)
T TIGR00415 206 WVKKFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNK-MRYLEGLPEGMYYCCAPKRDPELFE 284 (520)
T ss_pred CeeEEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcc-cCCCCCCchhheEEecCCCCcchhh
Confidence 45778999999999999999999999995 677889999999999999999976 5999999999999986442
Q ss_pred --------------CCC----CC-ceeccCCChhHHHHHHHhhhccCCCCCeEEEe-eeceeecCCCCCCCccccceeEE
Q 015587 74 --------------SDL----EV-PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQ-WCNVVRWEFSNPTPFIRSREFLW 133 (404)
Q Consensus 74 --------------~~l----~~-~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q-~~~vfR~E~~~~~gllR~REF~q 133 (404)
++| ++ .++|+||+|++++.++++|+.++++||++++| |++|||||.++++||+|++||+|
T Consensus 285 ~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~k 364 (520)
T TIGR00415 285 EFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLR 364 (520)
T ss_pred ccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEE
Confidence 111 33 89999999999999999999999999999999 77999999877899999999999
Q ss_pred eceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcce
Q 015587 134 QEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV 169 (404)
Q Consensus 134 ~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ipv 169 (404)
+|+|+ ++++++|.++..++++.|..+++.|+ +|+
T Consensus 365 vE~v~-~~tpEea~e~~e~mle~~~~~l~~L~-Lpy 398 (520)
T TIGR00415 365 VECVW-IAEPEETEEIRDKTLELAEDAADELD-LEW 398 (520)
T ss_pred EEEEE-EeCHHHHHHHHHHHHHHHHHHHHHcC-CCe
Confidence 99999 99999999999999999999998775 743
No 41
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=99.97 E-value=2.6e-30 Score=265.20 Aligned_cols=165 Identities=18% Similarity=0.305 Sum_probs=146.6
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHH-HHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCC------
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAE-IKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGE------ 73 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~-~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~------ 73 (404)
|+|..+++|++.|+|.|+++++.|++++++. .+++||+++.||.|++.++|.+ +||+++|.++||++++.++
T Consensus 206 lldk~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~k-sGhl~~F~e~my~V~~~~~d~e~~~ 284 (517)
T PRK00960 206 WVKRFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYK-MRYLEGLPEGMYYVCPPKRDPEYFE 284 (517)
T ss_pred CccccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhh-cCCccCChhhceEeecccccccccc
Confidence 4677899999999999999999999999876 6888999999999999999965 7999999999999974221
Q ss_pred ------------------CCC-CCceeccCCChhHHHHHHHhhhccCCCCCeEEEe-eeceeecCCCCCCCccccceeEE
Q 015587 74 ------------------SDL-EVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQ-WCNVVRWEFSNPTPFIRSREFLW 133 (404)
Q Consensus 74 ------------------~~l-~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q-~~~vfR~E~~~~~gllR~REF~q 133 (404)
+.| ++.++|||++|++++.+|++++.||++||+|+++ +|+|||||....+||+|+|||+|
T Consensus 285 ~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~k 364 (517)
T PRK00960 285 EFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHR 364 (517)
T ss_pred chhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEE
Confidence 011 3578999999999999999999999999999999 88999999656789999999999
Q ss_pred eceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcc
Q 015587 134 QEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP 168 (404)
Q Consensus 134 ~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ip 168 (404)
.|+|+ +++++++.+++..+++....+++.|+ +|
T Consensus 365 vE~h~-f~tpEqs~ee~e~ll~~~e~i~~~Lg-Lp 397 (517)
T PRK00960 365 IEIVW-LGTPEQVEEIRDELLKYAHILAEKLD-LE 397 (517)
T ss_pred EEEEE-EeCHHHHHHHHHHHHHHHHHHHHHcC-CC
Confidence 99995 99999999999999977777888875 77
No 42
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.97 E-value=6.2e-30 Score=230.61 Aligned_cols=147 Identities=31% Similarity=0.465 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHH-hcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhh
Q 015587 20 IWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 20 i~~~i~~~~~~~~~-~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (404)
|+++|++++++.+. +.||++|.||+|++.++|.+ +||++.|.++||+++++++ +.++||||+|++++.++++++
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~-sg~~~~~~~~~~~~~~~~~----~~~~L~pt~~~~~~~~~~~~~ 75 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEK-SGHWDNFSDEMFKVKDRGD----EEYCLRPTSEPGIYSLFKNEI 75 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHH-HSHHHHHGGGSEEEEETTT----EEEEE-SSSHHHHHHHHHHHE
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhh-ccccccccCCeeeeeeccc----ccEEeccccccceeeeeccee
Confidence 68999999999999 99999999999999999976 9999999999999999887 889999999999999999999
Q ss_pred cc-CCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcceEee
Q 015587 99 RG-HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKG 172 (404)
Q Consensus 99 ~s-~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ipv~~g 172 (404)
.+ |++||++++|+|+|||+|.++++|++|+|||+|.|+|+++.+ +++..++..+++.+.++++.||.-|+.+.
T Consensus 76 ~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~~i~~~lgl~~~~~~ 149 (173)
T PF00587_consen 76 RSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYKEILEKLGLEPYRIV 149 (173)
T ss_dssp EBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHTTSGCEEEE
T ss_pred eeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 99 999999999999999999888999999999999999998887 99999999999999999999973387543
No 43
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-28 Score=242.71 Aligned_cols=299 Identities=20% Similarity=0.263 Sum_probs=225.0
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHH-HhcCceEeccCcccChhhHhhhcccccCcccceEEEEecC----------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG---------- 72 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~-~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g---------- 72 (404)
|+.++|.|||.|.|.++..+|.+.||+.| -.-+..+|+.|+|.|..+| |.|||++.|.+=|-.=...|
T Consensus 32 YgGVsGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~Vl-kaSGHVdkF~D~mvkD~ktGecfRADHLvk 110 (599)
T KOG2298|consen 32 YGGVSGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVL-KASGHVDKFADWMVKDEKTGECFRADHLVK 110 (599)
T ss_pred hcCcccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHh-hcccchhhhhHHHhcCccccceehhhHHHH
Confidence 78899999999999999999999999999 4678999999999999999 77999999987543100000
Q ss_pred -----------------------------------------------CCCCC------------------CceeccCCCh
Q 015587 73 -----------------------------------------------ESDLE------------------VPIAIRPTSE 87 (404)
Q Consensus 73 -----------------------------------------------~~~l~------------------~~l~LRPt~e 87 (404)
|.+|+ -.-.|||+..
T Consensus 111 ~~~~rl~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETA 190 (599)
T KOG2298|consen 111 DAEERLKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETA 190 (599)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCcccc
Confidence 01111 3557999988
Q ss_pred hHHHHHHHhhhc-cCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhh--------HHHHHHH------
Q 015587 88 TVMYPYFSKWIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSE--------ADDEVLQ------ 152 (404)
Q Consensus 88 ~~i~~~~~~~i~-s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~--------a~~e~~~------ 152 (404)
.++.--|++... ..+.||+-..|+|+.||+|.+|+.||+|+|||+|.|+|-|-..... ++.++..
T Consensus 191 QG~FlNFkrlle~N~~KlPFA~AqiG~~fRNEISpRsGLlRvrEF~maEIEHFvdP~~K~h~kF~~V~~~~l~l~~~~~q 270 (599)
T KOG2298|consen 191 QGQFLNFKRLLEFNQGKLPFASAQIGKSFRNEISPRSGLLRVREFTMAEIEHFVDPLLKSHPKFSLVAAEKLRLFPRDKQ 270 (599)
T ss_pred ccccccHHHHHHhcCCCCcchHHHhchHhhhccCcccCceeEEEeehHHhhccCCCCCCCChhhhhhhhhhhhhcchhhh
Confidence 888777877653 3357999999999999999999899999999999999975222111 1111100
Q ss_pred ----------HHHHH-----------------HHHHHHhCCcc----e----------------------------EeeC
Q 015587 153 ----------ILELY-----------------RRIYEEFLAVP----V----------------------------IKGK 173 (404)
Q Consensus 153 ----------~~~~y-----------------~~~~~~l~~ip----v----------------------------~~g~ 173 (404)
+-++. ..++..+|.-+ + -+|.
T Consensus 271 ~~g~~a~~~~lgEaV~kg~V~netlGyfi~Ri~~fL~~lGid~~rlRFRqH~~nEMAHYA~DCWDaEi~tSYGWIEcVG~ 350 (599)
T KOG2298|consen 271 LSGQSAQKVALGEAVAKGTVNNETLGYFIGRIYLFLNKLGIDKERLRFRQHMANEMAHYAFDCWDAEIKTSYGWIECVGC 350 (599)
T ss_pred hccchhhHhHHHHHHHhhccccchhHHHHHHHHHHHHHhCcchhhcchHHHhhhhhhhhhccccchhhhhccCcEEEeec
Confidence 00100 01112222100 0 0111
Q ss_pred CCC------------------cCc----------------------c---------------------------------
Q 015587 174 KSE------------------LEN----------------------S--------------------------------- 180 (404)
Q Consensus 174 ~~~------------------~ek----------------------f--------------------------------- 180 (404)
.++ +.+ |
T Consensus 351 ADRs~yDL~~Hs~~t~~~Lv~~~kl~ePkeve~~~i~~~kk~~g~~fk~~ak~v~~~l~~~s~~e~~~~~~~L~~~g~~~ 430 (599)
T KOG2298|consen 351 ADRAAYDLSTHSRASKVWLVAELRLREPKEVEFAVIPPNKKELGCAFKKDAKGVNETLIFPSGKELIETLENLGDHGLLH 430 (599)
T ss_pred cchhheeeecCccccCCceeehhhcCCcceEEEEEeccchhhcchhhhhcccchhHHhhcCCHHHHHHHHHHhhcCCcEE
Confidence 000 000 0
Q ss_pred --------------------------------cH---HHHHHHHHHc----CCCC--CCCCCCCCCCceEEEEEecCCCC
Q 015587 181 --------------------------------KF---VQIGVMVMVH----GDDK--GLMLPPKVASVQVIVIPVPYKDA 219 (404)
Q Consensus 181 --------------------------------~F---Rli~~Lie~~----~d~~--Gl~lP~~iap~qV~Iipi~~~~~ 219 (404)
.| |++-+|.|+- +|+. -+.+||.+||+++.|.|++.+
T Consensus 431 ~~v~~l~k~~v~i~~~~k~~hV~e~~P~VIEPSfGiGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls~n-- 508 (599)
T KOG2298|consen 431 MYVVNLSKLHVRIKRKTKVPHVREVNPDVIEPSFGIGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLSPN-- 508 (599)
T ss_pred EEEEecccceeeeeeeeeeeeEEeecCCcccccchhhHHHHHHHhhhhccCcccccceeccCccccceEEEEEeccCc--
Confidence 01 9999999852 3333 257899999999999999864
Q ss_pred ChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHH
Q 015587 220 DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLV 299 (404)
Q Consensus 220 ~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~ 299 (404)
++..+.+..|.+.|++.||.+.+|+++ .|+|+++..-+..|+|+-|.|....+++++||+|.||+..|..+.++++.
T Consensus 509 --~ef~pv~~~ls~~L~~~gis~kvdds~-~SIGrrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS~~QvR~~i~e~~ 585 (599)
T KOG2298|consen 509 --LEFRPVCQGLSNELTENGISVKVDDSS-SSIGRRYARTDELGIPFGVTVDFDTLKNGTVTLRERDSTMQVRMHISKLK 585 (599)
T ss_pred --hhHHHHHHHHHHHHHhCCCeEEecCCC-CcHhhhhhccccccCceEEEEchhhhcCceEEEeecccHHHHHhhHHHHH
Confidence 578999999999999999999999998 69999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 015587 300 ERVKELLEE 308 (404)
Q Consensus 300 ~~i~~~l~~ 308 (404)
..|.+++..
T Consensus 586 s~v~~~~~g 594 (599)
T KOG2298|consen 586 SFLIKYISG 594 (599)
T ss_pred HHHHHHhcc
Confidence 888777653
No 44
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.95 E-value=2.9e-26 Score=232.00 Aligned_cols=150 Identities=17% Similarity=0.116 Sum_probs=135.0
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec-CCCCCCCceec
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GESDLEVPIAI 82 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~-g~~~l~~~l~L 82 (404)
..+++|+.|++|..+..+++|++.+++.|+++||++|.||+|++.++|.+.+|+ ...++||.|.|+ +| +.++|
T Consensus 3 ~~~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~--~~~~~~~~f~d~~~g----~~l~L 76 (391)
T PRK12292 3 WQLPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGA--ILDLRTFKLVDQLSG----RTLGL 76 (391)
T ss_pred CCCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCc--cchhhhEEEeecCCC----CEEEE
Confidence 468999999999999999999999999999999999999999999999776664 456899999999 77 89999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~ 162 (404)
||+.|++++++++..... ...|+|+||+|+|||+| +|+.| |+|||+|.+++++|.+...||+|++.++ .++++
T Consensus 77 RpD~T~~iaR~~a~~~~~-~~~p~r~~y~g~vfR~~-~~~~g--r~ref~Q~g~EiiG~~~~~aDaEvi~l~---~~~l~ 149 (391)
T PRK12292 77 RPDMTAQIARIAATRLAN-RPGPLRLCYAGNVFRAQ-ERGLG--RSREFLQSGVELIGDAGLEADAEVILLL---LEALK 149 (391)
T ss_pred CCCCcHHHHHHHHHhccC-CCCCeEEEeeceeeecC-CCcCC--CccchhccceEEeCCCCchHHHHHHHHH---HHHHH
Confidence 999999999998876432 46899999999999999 57899 9999999999999999999999999988 47777
Q ss_pred HhCC
Q 015587 163 EFLA 166 (404)
Q Consensus 163 ~l~~ 166 (404)
.+|.
T Consensus 150 ~lgl 153 (391)
T PRK12292 150 ALGL 153 (391)
T ss_pred HcCC
Confidence 7763
No 45
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.95 E-value=2.1e-27 Score=223.69 Aligned_cols=155 Identities=26% Similarity=0.402 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
|+.++++|++++++.+.++||++|.||+|++.++|.+ ++|++.|.++||++.+.++...++.++||||.|+++++++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~ 79 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFK-GGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSG 79 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhh-cCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhc
Confidence 5789999999999999999999999999999999964 779999999999999987222228899999999999999999
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcceEeeCC
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKK 174 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ipv~~g~~ 174 (404)
++.+|++||+|++|+|+|||+|.++..|+.|+|||+|.|+|++|.+. ++.++...+++++.++++.+| +|+.+...
T Consensus 80 ~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~-~~~~~~~e~~~~~~~~l~~lg-l~~~i~~~ 155 (235)
T cd00670 80 EILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPE-EAEEERREWLELAEEIARELG-LPVRVVVA 155 (235)
T ss_pred cCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHH-HHHHHHHHHHHHHHHHHHHcC-CcEEEEEc
Confidence 99999999999999999999997755688999999999999987663 555666667777789999986 68765444
No 46
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.93 E-value=4.5e-26 Score=217.75 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=129.5
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcC--ceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCcee
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMK--IQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIA 81 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G--~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~ 81 (404)
|++++|++||+|.|..++++|.+++++.+.++| |++|.||++++.++|..+.|++ |.++ +.++
T Consensus 18 y~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~-----------d~~~----~~~~ 82 (254)
T cd00774 18 YGGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPV-----------ESGG----NLGY 82 (254)
T ss_pred ccChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeeccc-----------CCCC----cccc
Confidence 466899999999999999999999999999996 9999999999998886544543 2233 6899
Q ss_pred ccCCChhHHHHHHHhhhccCC-CCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 82 IRPTSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~-~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
|||+.|+.+...|++...+++ +||++++|+|+|||+|.+|+.||+|+|||+|.|+|+|+ +++++..++..+++++.++
T Consensus 83 Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~-~~~~~~e~~~~v~~~~~~~ 161 (254)
T cd00774 83 LRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFV-DPEKSHPWFDYWADQRLKW 161 (254)
T ss_pred cCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhheeeeE-CCCCchHHHHHHHHHHHHH
Confidence 999999888888888777665 99999999999999998877899999999999999976 6668899999999999999
Q ss_pred HHHhCC
Q 015587 161 YEEFLA 166 (404)
Q Consensus 161 ~~~l~~ 166 (404)
|.++|.
T Consensus 162 l~~~G~ 167 (254)
T cd00774 162 LPKFAQ 167 (254)
T ss_pred HHHcCC
Confidence 999874
No 47
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.93 E-value=3.8e-25 Score=189.57 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=107.0
Q ss_pred HHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCC--CChhHHHHHHHHcCCCE
Q 015587 189 VMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDN--YSPGWKYSHWEMKGVPL 266 (404)
Q Consensus 189 ie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~--~s~g~k~~~ae~~GvP~ 266 (404)
+|++.|+.|++||+.+||+||+|+|+..+ .+++.++|.+|++.|+++|++|.+|++.+ .++|+||++|+++|+|+
T Consensus 10 iE~~~d~~Gl~~P~~iAP~qV~Iipi~~~---~~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliGiP~ 86 (128)
T cd02426 10 RKKGRQRQVLKLHPCLAPYKVAIDCGKGD---TAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLF 86 (128)
T ss_pred hhcCCCCcEEECCCCCCCeEEEEEeccCC---hHHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcCCCE
Confidence 57888999999999999999999999533 26799999999999999999999999874 38999999999999999
Q ss_pred EEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 267 RIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 267 ~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
+|+||++++++|+|++++|+|+++..++++++.+.+.+++.
T Consensus 87 ~I~IG~~~l~~g~vei~~Rdt~~k~~v~~~~l~~~i~~~~~ 127 (128)
T cd02426 87 TLLISEQTLENGLLQLRSRDTTLKETIHISDLPDYLLRYIA 127 (128)
T ss_pred EEEECCCcccCCEEEEEECCCCceEEEeHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998887653
No 48
>PLN02678 seryl-tRNA synthetase
Probab=99.91 E-value=2.6e-24 Score=218.62 Aligned_cols=192 Identities=15% Similarity=0.201 Sum_probs=162.6
Q ss_pred ccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChh
Q 015587 9 GCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSET 88 (404)
Q Consensus 9 G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~ 88 (404)
+++.+.+.|.++.+.|.+++.+.+.+.||++|.+|.|.+.++|. .+||++.|.++||.+.+.| ++++|.||+|+
T Consensus 165 ~~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~-~sG~~~~f~e~my~i~~~~-----~~~yLi~TaE~ 238 (448)
T PLN02678 165 RGYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMA-KCAQLAQFDEELYKVTGEG-----DDKYLIATSEQ 238 (448)
T ss_pred eeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHh-hcCCcccchhcCceecCCC-----Cceeeeccccc
Confidence 35556669999999999999999999999999999999999994 6999999999999996543 46889999999
Q ss_pred HHHHHHHhhhccCCCCCeEEEeeeceeecCCC----CCCCccccceeEEeceeeecCChhh--HHHHHHHHHHHHHHHHH
Q 015587 89 VMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSE--ADDEVLQILELYRRIYE 162 (404)
Q Consensus 89 ~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~--a~~e~~~~~~~y~~~~~ 162 (404)
+++.++++.+.||++||+|++.+++|||.|.. .++||+|+|||++.|+.. .+++++ +.+++..|++.+.+||.
T Consensus 239 ~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~-~~~pe~~~s~~~~e~~l~~~~~i~~ 317 (448)
T PLN02678 239 PLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFC-ITSPNGNESWEMHEEMLKNSEDFYQ 317 (448)
T ss_pred ccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEE-EECCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999985 477999999999999976 666676 99999999999999999
Q ss_pred HhCCcceEe--------eCCCC-----------cCcc-------------------------------cH----------
Q 015587 163 EFLAVPVIK--------GKKSE-----------LENS-------------------------------KF---------- 182 (404)
Q Consensus 163 ~l~~ipv~~--------g~~~~-----------~ekf-------------------------------~F---------- 182 (404)
.|+ +|+.+ |.... ..+| .|
T Consensus 318 ~L~-lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~QaRRl~iryr~~~~~~~~~~~vHTLNgt~lA 396 (448)
T PLN02678 318 SLG-IPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTA 396 (448)
T ss_pred HcC-CCeEEEeecccccCCchhhceeeEeeccccCCceEEeeecccccHhhhcccceecccccCCCCceeEEecCCchhH
Confidence 986 77632 22110 0011 12
Q ss_pred --HHHHHHHHHcCCCCCCCCCCCCCCce
Q 015587 183 --VQIGVMVMVHGDDKGLMLPPKVASVQ 208 (404)
Q Consensus 183 --Rli~~Lie~~~d~~Gl~lP~~iap~q 208 (404)
|+|.+|+|+|....|+.+|..+-|+-
T Consensus 397 ~~R~l~AiLEn~Q~~dgi~iP~vL~pym 424 (448)
T PLN02678 397 TERTLCCILENYQTEDGVRVPEVLQPFM 424 (448)
T ss_pred HHHHHHHHHHhCcCCCCeECChhhhhhc
Confidence 99999999998878888898888863
No 49
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=99.91 E-value=7.5e-25 Score=166.65 Aligned_cols=68 Identities=46% Similarity=0.997 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCCEEEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 331 WDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 331 ~~e~~~~~~~~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
||||+++|++||||++||||+.+||++||+++ ||++|||||+... ..+.+|++||+||++|+||||||
T Consensus 1 ~eE~k~~i~~gg~v~~pwcg~~ece~~ike~t-----~at~rciP~~~~~-~~~~~Ci~cgk~a~~~~~farsY 68 (68)
T PF09180_consen 1 YEEFKEAIEKGGFVLVPWCGDEECEEKIKEET-----GATIRCIPFDEQE-PEGGKCIVCGKPAKKWVLFARSY 68 (68)
T ss_dssp HHHHHHHHHTSSEEEEEES-SHHHHHHHHHHH-----S-EEEEEETTSCE-BTT-B-TTT-SB-SCEEEEE-B-
T ss_pred ChHHHHHHhCCCEEEEEccCCHHHHHHHHHhc-----CCcEeEeEccCCC-CCCCeeecCCChhhEEEEEEEEC
Confidence 79999999889999999999999999999999 9999999999322 24457999999999999999999
No 50
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.90 E-value=2.9e-23 Score=209.92 Aligned_cols=149 Identities=12% Similarity=-0.003 Sum_probs=132.6
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec-CCCCCCCceec
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GESDLEVPIAI 82 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~-g~~~l~~~l~L 82 (404)
...++|+.|++|..+..+++|++.+++.|+++||++|.||+||+.++|.+++|. .....||.|.|. +| +.++|
T Consensus 7 ~~~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~--~~~~~~y~f~D~~~g----~~l~L 80 (392)
T PRK12421 7 WLLPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQ--DLKLQTFKLIDQLSG----RLMGV 80 (392)
T ss_pred cCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCc--cchhceEEEEcCCCC----cEEEE
Confidence 368999999999999999999999999999999999999999999999766553 344679999998 45 78999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~ 162 (404)
||+.|+++++++++... ...|+|+||+|+|||++ +++.| |+|||+|.+++++|.+...||+|++.++ .++++
T Consensus 81 RpD~T~~iaR~~a~~~~--~~~p~R~~Y~g~VfR~~-~~~~g--r~rEf~Q~GvEiiG~~~~~aDaEvi~l~---~e~l~ 152 (392)
T PRK12421 81 RADITPQVARIDAHLLN--REGVARLCYAGSVLHTL-PQGLF--GSRTPLQLGAELYGHAGIEADLEIIRLM---LGLLR 152 (392)
T ss_pred CCcCCHHHHHHHHhhcC--CCCceEEEEeeeEEEcC-CCcCC--CcCccceeceEEeCCCCchhHHHHHHHH---HHHHH
Confidence 99999999998876542 26799999999999999 46789 9999999999999999999999999988 47888
Q ss_pred HhCC
Q 015587 163 EFLA 166 (404)
Q Consensus 163 ~l~~ 166 (404)
.+|.
T Consensus 153 ~lgi 156 (392)
T PRK12421 153 NAGV 156 (392)
T ss_pred HcCC
Confidence 8874
No 51
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=99.87 E-value=8.9e-22 Score=193.82 Aligned_cols=159 Identities=19% Similarity=0.137 Sum_probs=136.7
Q ss_pred EEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHH
Q 015587 11 YIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVM 90 (404)
Q Consensus 11 ~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i 90 (404)
+|++|.++.+++.|++.+++.|+++||++|.||+|++.++|.+.++ ...++||.|.|.+| +.++|||+.|+.+
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~---~~~~~~~~~~d~~g----~~l~LRpD~T~~i 73 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG---ILNEDLFKLFDSLG----RVLGLRPDMTTPI 73 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC---cchhceEEEECCCC----CEEeecCcCcHHH
Confidence 4799999999999999999999999999999999999999976544 36789999999887 8999999999999
Q ss_pred HHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcc--
Q 015587 91 YPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP-- 168 (404)
Q Consensus 91 ~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ip-- 168 (404)
+++++...+ ..++|+|++|+|+|||+|. ++.| |.|||+|.++|+++.+...||+|++.++ .++++.++.-+
T Consensus 74 aR~~~~~~~-~~~~p~r~~y~g~VfR~~~-~~~g--r~re~~Q~g~Eiig~~~~~adaEvi~l~---~~~l~~lg~~~~~ 146 (314)
T TIGR00443 74 ARAVSTRLR-DRPLPLRLCYAGNVFRTNE-SGAG--RSREFTQAGVELIGAGGPAADAEVIALL---IEALKALGLKDFK 146 (314)
T ss_pred HHHHHHhcc-cCCCCeEEEEeceEeecCC-CcCC--CcccccccceEEeCCCCchhHHHHHHHH---HHHHHHcCCCCeE
Confidence 999987655 3578999999999999994 5788 9999999999999999999999999888 47888887433
Q ss_pred eEeeCCCCcCcccHHHHHHHHHH
Q 015587 169 VIKGKKSELENSKFVQIGVMVMV 191 (404)
Q Consensus 169 v~~g~~~~~ekf~FRli~~Lie~ 191 (404)
+.+|.. .++.++++.
T Consensus 147 i~l~~~--------~il~~il~~ 161 (314)
T TIGR00443 147 IELGHV--------GLVRALLEE 161 (314)
T ss_pred EEeCcH--------HHHHHHHHH
Confidence 344543 466666663
No 52
>PLN02320 seryl-tRNA synthetase
Probab=99.87 E-value=1.5e-21 Score=199.63 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=135.5
Q ss_pred CCccEE-eCchHHH-HHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCccc-ceEEEEecCCCCCCCceecc
Q 015587 7 ISGCYI-MRPWAIS-IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 7 ~~G~~~-~~P~g~~-i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~-e~~~~~~~g~~~l~~~l~LR 83 (404)
+.|... |+|.+.+ +.+.|++++.+...+.||++|.+|.|...++|. .+||+..|.+ .+|.+. + +.++|-
T Consensus 220 vsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~-~sG~~p~~e~~~~y~ie---~----ed~~Li 291 (502)
T PLN02320 220 VSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVE-KCGFQPRGDNTQVYSID---G----SDQCLI 291 (502)
T ss_pred cCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHH-hcCCCcccccCceeEEC---C----CceEEe
Confidence 568887 5888666 558999999999999999999999999999995 6999877766 777763 2 679999
Q ss_pred CCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC----CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
||+|.++..++.+.+.+|++||+|+..+++|||+|.. .++||+|+|||.+.|+|+ +++++++++|+..|++...+
T Consensus 292 ~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 292 GTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQIEED 370 (502)
T ss_pred ecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHHHHHH
Confidence 9999888888889899999999999999999999976 467999999999999998 88899999999999999999
Q ss_pred HHHHhCCcce
Q 015587 160 IYEEFLAVPV 169 (404)
Q Consensus 160 ~~~~l~~ipv 169 (404)
+|+.|| +|+
T Consensus 371 i~~~Lg-Lpy 379 (502)
T PLN02320 371 LFTSLG-LHF 379 (502)
T ss_pred HHHHcC-CCe
Confidence 999997 563
No 53
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.86 E-value=4.7e-21 Score=185.48 Aligned_cols=156 Identities=12% Similarity=0.039 Sum_probs=130.9
Q ss_pred CccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCcee
Q 015587 2 IEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIA 81 (404)
Q Consensus 2 ~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~ 81 (404)
.+...++|+.|++|..+.+++.|++.+.+.|+++||++|.||+||+.+++.. ...++||.|.|++| +.++
T Consensus 3 ~~~~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~------~~~~~~y~~~D~~g----~~l~ 72 (281)
T PRK12293 3 LEHEIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI------ADEKELIRFSDEKN----HQIS 72 (281)
T ss_pred CCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc------cchhceEEEECCCC----CEEE
Confidence 4678899999999999999999999999999999999999999999998832 24579999999887 8999
Q ss_pred ccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 82 IRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
|||+.|++++++++...+. ..+|+|+||+|+|||+|. |||+|.+++++|.+.. +|++.++ .+.+
T Consensus 73 LRpD~T~~iaR~~a~~~~~-~~~p~r~~Y~g~vfR~~~---------rEf~Q~GvEliG~~~~---~Evi~la---~~~l 136 (281)
T PRK12293 73 LRADSTLDVVRIVTKRLGR-STEHKKWFYIQPVFRYPS---------NEIYQIGAELIGEEDL---SEILNIA---AEIF 136 (281)
T ss_pred ECCcCCHHHHHHHHHhccc-CCCceeEEEeccEEecCC---------CcccccCeEeeCCCCH---HHHHHHH---HHHH
Confidence 9999999999999876543 368999999999999982 8999999999999875 4777776 5788
Q ss_pred HHhCC-cceEeeCCCCcCcccHHHHHHHHHH
Q 015587 162 EEFLA-VPVIKGKKSELENSKFVQIGVMVMV 191 (404)
Q Consensus 162 ~~l~~-ipv~~g~~~~~ekf~FRli~~Lie~ 191 (404)
+.+|. ..+.+|.. +++..+++.
T Consensus 137 ~~lgl~~~i~ig~~--------~i~~~~l~~ 159 (281)
T PRK12293 137 EELELEPILQISNI--------KIPKLVAEI 159 (281)
T ss_pred HHcCCCCEEEECCH--------HHHHHHHHH
Confidence 88873 12345554 466666664
No 54
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.85 E-value=7.8e-21 Score=182.36 Aligned_cols=212 Identities=15% Similarity=0.125 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
+.++++|++.+++.|+++||++|.||+|++.++|.+.. ++...++||.|.|.+| +.++|||+.|+.++++++..
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~--~~~~~~~~~~~~d~~g----~~l~LRpd~T~~iaR~~a~~ 75 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS--GDEVSKEMYRFKDKGG----RDLALRPDLTAPVARAVAEN 75 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc--cccccceEEEEECCCC----CEEEeCCCCcHHHHHHHHhc
Confidence 56899999999999999999999999999999996543 4567889999999887 89999999999999999987
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcc--eEeeCCC
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP--VIKGKKS 175 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ip--v~~g~~~ 175 (404)
..+ +++|+|+||+|+|||+|. ++.| |.|||+|.++|+++.+...+|+|++.++ .++++.++.-+ +.+|..
T Consensus 76 ~~~-~~~p~k~~y~g~vfR~e~-~~~g--~~re~~Q~g~Eiig~~~~~~daE~i~l~---~~~l~~lg~~~~~i~l~~~- 147 (261)
T cd00773 76 LLS-LPLPLKLYYIGPVFRYER-PQKG--RYREFYQVGVEIIGSDSPLADAEVIALA---VEILEALGLKDFQIKINHR- 147 (261)
T ss_pred Ccc-CCCCeEEEEEcCEEecCC-CCCC--CccceEEeceeeeCCCChHHHHHHHHHH---HHHHHHcCCCceEEEECCH-
Confidence 666 579999999999999995 4678 9999999999999999999999988887 47888887433 345554
Q ss_pred CcCcccHHHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCC--CEEEEeCCCCCChh
Q 015587 176 ELENSKFVQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAG--IRANSDFRDNYSPG 253 (404)
Q Consensus 176 ~~ekf~FRli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~G--irv~~D~~~~~s~g 253 (404)
.++-+++... | +++.. .-.+.-.-. .+..+.-..+.+.|++.| ..+.+|...-
T Consensus 148 -------~i~~~l~~~~----~--~~~~~---~~~l~~~l~-----~~~l~~l~~l~~~l~~~~~~~~i~~d~~~~---- 202 (261)
T cd00773 148 -------GILDGIAGLL----E--DREEY---IERLIDKLD-----KEALAHLEKLLDYLEALGVDIKYSIDLSLV---- 202 (261)
T ss_pred -------HHHHHHhhcc----C--CCHHH---HHHHHHHhh-----HHHHHHHHHHHHHHHHcCCCceEEEcCccc----
Confidence 4565555432 1 11110 000000000 134566678888888888 4577777542
Q ss_pred HHHHHHHHcCCCEEEEE
Q 015587 254 WKYSHWEMKGVPLRIEI 270 (404)
Q Consensus 254 ~k~~~ae~~GvP~~iiI 270 (404)
..+.+. -|+=+.+..
T Consensus 203 r~~~YY--tG~vF~~~~ 217 (261)
T cd00773 203 RGLDYY--TGIVFEAVA 217 (261)
T ss_pred cCCccc--CceEEEEEE
Confidence 223443 377676655
No 55
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=99.84 E-value=3.8e-20 Score=181.79 Aligned_cols=160 Identities=15% Similarity=0.144 Sum_probs=127.5
Q ss_pred ccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChh
Q 015587 9 GCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSET 88 (404)
Q Consensus 9 G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~ 88 (404)
||.||+|..++.+++|++.+.+.|+++||++|.||+|++.+++...++. ..+++|.|.|++| +.++|||+.|.
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~---~~~~~~~~~D~~G----~~l~LR~D~T~ 73 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGE---DSDNMYRFLDRSG----RVLALRPDLTV 73 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSST---TGGCSEEEECTTS----SEEEE-SSSHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhcccc---chhhhEEEEecCC----cEeccCCCCcH
Confidence 8999999999999999999999999999999999999999999654442 2458999999877 99999999999
Q ss_pred HHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH-HhCCc
Q 015587 89 VMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE-EFLAV 167 (404)
Q Consensus 89 ~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~-~l~~i 167 (404)
.++++++.... ...|.|+||+|+|||++ +++.| |.|||+|.++++++.+...+|+|++.++. ++++ .++.-
T Consensus 74 ~iaR~~a~~~~--~~~~~r~~y~g~vfR~~-~~~~g--~~re~~Q~g~Eiig~~~~~~daEvi~l~~---e~l~~~l~~~ 145 (311)
T PF13393_consen 74 PIARYVARNLN--LPRPKRYYYIGPVFRYE-RPGKG--RPREFYQCGFEIIGSSSLEADAEVIKLAD---EILDRELGLE 145 (311)
T ss_dssp HHHHHHHHCCG--SSSSEEEEEEEEEEEEE-TTTTT--BESEEEEEEEEEESSSSHHHHHHHHHHHH---HHHHHHHTTT
T ss_pred HHHHHHHHhcC--cCCCceEEEEcceeecc-ccCCC--CCceeEEEEEEEECCCCHHHHHHHHHHHH---HHHHhhcCCC
Confidence 99999988643 46899999999999999 55778 99999999999999999999999999884 7775 77632
Q ss_pred c--eEeeCCCCcCcccHHHHHHHHHH
Q 015587 168 P--VIKGKKSELENSKFVQIGVMVMV 191 (404)
Q Consensus 168 p--v~~g~~~~~ekf~FRli~~Lie~ 191 (404)
. +.+|.. +++.++++.
T Consensus 146 ~~~i~i~h~--------~i~~~il~~ 163 (311)
T PF13393_consen 146 NFTIRINHT--------GILDAILEH 163 (311)
T ss_dssp SEEEEEEEH--------HHHHHHHHH
T ss_pred CcEEEEcCc--------hhhHHHHhh
Confidence 3 345544 466666553
No 56
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.1e-19 Score=177.90 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=142.2
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
+.++++.+.+.+.++.+.|.+++-+...+.||+++.+|.|.+.+.+ ..+|.++.|.++||.+.+ ..++|-||
T Consensus 162 sGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m-~gtgqlpkf~e~~y~v~~-------~~~~LipT 233 (429)
T COG0172 162 SGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESM-FGTGQLPKFEEDLYKVED-------PDLYLIPT 233 (429)
T ss_pred CCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHh-hccCCCCCCcccceEecC-------CCEEEEec
Confidence 4678999999999999999999999999999999999999999998 569999999999999975 46999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC----CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN----PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~----~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
+|.+++.++++.+..-.+||+++.-+++|||+|... ++||+|.+||...|.-. .+.++++..+...|+..-.+++
T Consensus 234 aEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~~Pe~S~~~~E~m~~~ae~il 312 (429)
T COG0172 234 AEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-ITKPEESEEELEEMLGNAEEVL 312 (429)
T ss_pred chhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEE-EeCcchhHHHHHHHHHHHHHHH
Confidence 999999999999988778999999999999999865 88999999999999887 7889999999999998888999
Q ss_pred HHhCCcce
Q 015587 162 EEFLAVPV 169 (404)
Q Consensus 162 ~~l~~ipv 169 (404)
+.|+ +|+
T Consensus 313 ~~Le-LPy 319 (429)
T COG0172 313 QELE-LPY 319 (429)
T ss_pred HHhC-CCc
Confidence 9885 786
No 57
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.77 E-value=3e-18 Score=172.04 Aligned_cols=145 Identities=12% Similarity=0.059 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhhcc
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRG 100 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s 100 (404)
.+.|.+.+++.|+++||++|.||+|++.++|...+|. ...++||.|.|++| +.++|||+.|+++++++... .
T Consensus 7 ~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~--~~~~~~~~f~D~~G----~~l~LRpD~T~piaR~~~~~-~- 78 (373)
T PRK12295 7 SAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGE--DIRRRIFVTSDENG----EELCLRPDFTIPVCRRHIAT-A- 78 (373)
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCc--hhhcceEEEECCCC----CEEeeCCCCcHHHHHHHHHc-C-
Confidence 3479999999999999999999999999999765553 35678999999988 89999999999999987654 2
Q ss_pred CCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC-ChhhHHHHHHHHHHHHHHHHHHhCCcce--EeeCCCCc
Q 015587 101 HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQILELYRRIYEEFLAVPV--IKGKKSEL 177 (404)
Q Consensus 101 ~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~e~~~~~~~y~~~~~~l~~ipv--~~g~~~~~ 177 (404)
...|+|+||+|+|||+| .| |+|||+|.+++++|. +...||+|++.++ .++++.+|..++ .+|..
T Consensus 79 -~~~p~R~~Y~g~VfR~~----~g--r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~---~~~L~~lgl~~~~i~ig~~--- 145 (373)
T PRK12295 79 -GGEPARYAYLGEVFRQR----RD--RASEFLQAGIESFGRADPAAADAEVLALA---LEALAALGPGDLEVRLGDV--- 145 (373)
T ss_pred -CCCCeEEEEEccEEECC----CC--CCCcceEeeEEeeCCCCCccchHHHHHHH---HHHHHHcCCCceEEEeCCH---
Confidence 36799999999999999 46 999999999999997 4578999999988 478888875333 44554
Q ss_pred CcccHHHHHHHHHH
Q 015587 178 ENSKFVQIGVMVMV 191 (404)
Q Consensus 178 ekf~FRli~~Lie~ 191 (404)
+++.++++.
T Consensus 146 -----~il~~ll~~ 154 (373)
T PRK12295 146 -----GLFAALVDA 154 (373)
T ss_pred -----HHHHHHHHH
Confidence 466666664
No 58
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.77 E-value=4.7e-18 Score=144.49 Aligned_cols=103 Identities=24% Similarity=0.405 Sum_probs=93.8
Q ss_pred CCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCC
Q 015587 198 LMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAN 277 (404)
Q Consensus 198 l~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~ 277 (404)
++||+|++|++|+|+|.++ + ++...++.++++.||++|++|++|++ . ++++|+++|++.|+|++++||++|+++
T Consensus 18 ~~~P~~lap~~v~Ii~~~~-~---~~~~~~a~~la~~LR~~gi~v~~d~~-~-sl~kqlk~A~k~g~~~~iiiG~~e~~~ 91 (121)
T cd00858 18 LRLPPALAPIKVAVLPLVK-R---DELVEIAKEISEELRELGFSVKYDDS-G-SIGRRYARQDEIGTPFCVTVDFDTLED 91 (121)
T ss_pred EEcCCCcCCcEEEEEecCC-c---HHHHHHHHHHHHHHHHCCCEEEEeCC-C-CHHHHHHHhHhcCCCEEEEECcCchhC
Confidence 5799999999999999872 1 35678999999999999999999998 4 999999999999999999999999999
Q ss_pred CeEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 278 DQVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 278 ~~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
|+|++++++++++..++++++.+.+.+++
T Consensus 92 ~~v~lk~l~~~~~~~v~l~~l~~~l~~~~ 120 (121)
T cd00858 92 GTVTIRERDSMRQVRVKIEELPSYLRELI 120 (121)
T ss_pred CEEEEEECCCCceEEEEHHHHHHHHHHHh
Confidence 99999999999999999999887776654
No 59
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.77 E-value=2.6e-18 Score=139.16 Aligned_cols=94 Identities=35% Similarity=0.457 Sum_probs=87.8
Q ss_pred eEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCC
Q 015587 208 QVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDN 287 (404)
Q Consensus 208 qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~ 287 (404)
||+|+|++.+ .++..++|.++++.|+++|++|++|+++ .++|+||++|++.|+||+|+||++|+++|+|+|++|++
T Consensus 1 qv~Ii~~~~~---~~~~~~~a~~l~~~L~~~gi~v~~d~~~-~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~ 76 (94)
T PF03129_consen 1 QVVIIPVGKK---DEEIIEYAQELANKLRKAGIRVELDDSD-KSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDT 76 (94)
T ss_dssp SEEEEESSCS---HHHHHHHHHHHHHHHHHTTSEEEEESSS-STHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTT
T ss_pred CEEEEEeCCC---cHHHHHHHHHHHHHHHHCCCEEEEECCC-CchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCC
Confidence 7999999864 3578999999999999999999999976 69999999999999999999999999999999999999
Q ss_pred CceeeechhhHHHHHHHH
Q 015587 288 GAKIDLPRGSLVERVKEL 305 (404)
Q Consensus 288 ~~k~~v~~~el~~~i~~~ 305 (404)
+++..++++++++.|++.
T Consensus 77 ~~~~~v~~~el~~~l~~~ 94 (94)
T PF03129_consen 77 GEQETVSLEELIEYLKEN 94 (94)
T ss_dssp TEEEEEECCHHHHHHHHH
T ss_pred CcEEEEEHHHHHHHHhhC
Confidence 999999999999988763
No 60
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.73 E-value=2.6e-17 Score=132.96 Aligned_cols=93 Identities=28% Similarity=0.432 Sum_probs=85.2
Q ss_pred CceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEEC
Q 015587 206 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRR 285 (404)
Q Consensus 206 p~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r 285 (404)
|+||+|+|+..++ ++...++.++++.||++|++|++|++. .++|+++++|++.|+|++|+||++|+++|+|++++|
T Consensus 1 P~qv~i~p~~~~~---~~~~~~a~~la~~Lr~~g~~v~~d~~~-~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~ 76 (94)
T cd00861 1 PFDVVIIPMNMKD---EVQQELAEKLYAELQAAGVDVLLDDRN-ERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVR 76 (94)
T ss_pred CeEEEEEEcCCCc---HHHHHHHHHHHHHHHHCCCEEEEECCC-CCcccchhHHHhcCCCEEEEECCchhhCCEEEEEEC
Confidence 7899999998541 467789999999999999999999987 599999999999999999999999999999999999
Q ss_pred CCCceeeechhhHHHHH
Q 015587 286 DNGAKIDLPRGSLVERV 302 (404)
Q Consensus 286 ~~~~k~~v~~~el~~~i 302 (404)
+++++..++++++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~l 93 (94)
T cd00861 77 KTGEKEEISIDELLEFL 93 (94)
T ss_pred CCCcceEEeHHHHHHhh
Confidence 99999999998886654
No 61
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.70 E-value=2.2e-16 Score=155.61 Aligned_cols=114 Identities=24% Similarity=0.315 Sum_probs=100.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHc
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMK 262 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~ 262 (404)
|++.+++..--...-+.||+|+||.||+|+|++. +...+|.++++.||++|++|++|++. .++|+|+++|++.
T Consensus 251 r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~e------el~e~AlkLA~eLR~aGIrVeiDl~s-rSLgKQiK~AdK~ 323 (387)
T PRK14938 251 LLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKK------DFLDFSIQVAERLRKEGIRVNVDDLD-DSLGNKIRRAGTE 323 (387)
T ss_pred HHHHHHHHHhhhHHhCcCCCccCcceEEEEEeCh------HHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHc
Confidence 8877765533223367999999999999999863 47789999999999999999999987 6999999999999
Q ss_pred CCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHH
Q 015587 263 GVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303 (404)
Q Consensus 263 GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~ 303 (404)
|+|++|+||++|+++|+|++++|++++|..++++++.+.++
T Consensus 324 GaPfvIIIGedEle~gtVtIKdrdTgEQ~~IsLdELie~Lk 364 (387)
T PRK14938 324 WIPFVIIIGEREVKTSTLTVKIRANNEQKSMTVEELVKEIK 364 (387)
T ss_pred CCCEEEEECchhhhCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 99999999999999999999999999999999998876665
No 62
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=99.70 E-value=5.6e-17 Score=161.25 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=135.0
Q ss_pred ccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceec
Q 015587 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAI 82 (404)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~L 82 (404)
.+..+.|+.|.+|..+...++|.+.+.+.|.++||+.|.||+|++.+.|.-..|+ +-...+|.++|..| ++++|
T Consensus 2 ~~~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~--~l~~~~f~l~d~~g----~~l~L 75 (390)
T COG3705 2 TWQLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGE--DLRRRLFKLEDETG----GRLGL 75 (390)
T ss_pred CCcCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccch--hhhhhheEEecCCC----CeEEe
Confidence 4578999999999999999999999999999999999999999999999765554 45678999999988 77999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~ 162 (404)
||+.|+++++.......+ .|.|++|.|+|||-. +...| |..||+|.+++.+|.+...||+|++..+ ...++
T Consensus 76 RpD~T~pVaR~~~~~~~~---~P~Rl~Y~G~Vfr~~-~~~~g--~~~Ef~QaGiEllG~~~~~ADaEvi~la---~~~L~ 146 (390)
T COG3705 76 RPDFTIPVARIHATLLAG---TPLRLSYAGKVFRAR-EGRHG--RRAEFLQAGIELLGDDSAAADAEVIALA---LAALK 146 (390)
T ss_pred cccccHHHHHHHHHhcCC---CCceeeecchhhhcc-hhccC--cccchhhhhhHHhCCCcchhhHHHHHHH---HHHHH
Confidence 999999999998887654 899999999999998 55668 8889999999999999999999998876 46667
Q ss_pred HhCC--cceEeeC
Q 015587 163 EFLA--VPVIKGK 173 (404)
Q Consensus 163 ~l~~--ipv~~g~ 173 (404)
.+|. +.+.+|.
T Consensus 147 ~~gl~~~~l~LG~ 159 (390)
T COG3705 147 ALGLADLKLELGH 159 (390)
T ss_pred HcCCcCeEEEecc
Confidence 7763 2345553
No 63
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=5.5e-16 Score=152.84 Aligned_cols=189 Identities=13% Similarity=0.157 Sum_probs=159.3
Q ss_pred EEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHH
Q 015587 11 YIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVM 90 (404)
Q Consensus 11 ~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i 90 (404)
|.++..+..+-+.|.++--+.+.+.||.++.+|.|.+.+++. +.|....|.+++|.+.|.+ ++.+|--|+|.++
T Consensus 178 Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~-~cg~~~~~d~~~~y~ld~~-----~~~~LiaTaE~pl 251 (455)
T KOG2509|consen 178 YYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQ-KCGQLPRFDEEQYYVLDGG-----DEKYLIATAEQPL 251 (455)
T ss_pred eEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHH-HhccCcCCCcceEEeecCC-----ccceeEeeccchh
Confidence 467899999999999999999999999999999999999995 5888888999999999875 4688999999999
Q ss_pred HHHHHhhhccCCCCCeEEEeeeceeecCC----CCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 91 YPYFSKWIRGHRDLPLKLNQWCNVVRWEF----SNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 91 ~~~~~~~i~s~~~lPlk~~q~~~vfR~E~----~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
+.++.+......+||+|+.-.+.|||-|. +.++||+|++||...|... -++++++.++...|++.-.++|..||
T Consensus 252 Aa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fv-it~Pe~S~~~~eEmi~~~eef~qsLg- 329 (455)
T KOG2509|consen 252 AAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFV-ITGPEDSWEMLEEMINNQEEFYQSLG- 329 (455)
T ss_pred hhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEE-ecCcchhHHHHHHHHHHHHHHHHHhC-
Confidence 99998777666899999999999999998 2467999999999999887 67778888899999988899999997
Q ss_pred cceEe-eCCC------CcCcc----------------------cH---------------------------------HH
Q 015587 167 VPVIK-GKKS------ELENS----------------------KF---------------------------------VQ 184 (404)
Q Consensus 167 ipv~~-g~~~------~~ekf----------------------~F---------------------------------Rl 184 (404)
||+.+ +.-| ...|| +| |+
T Consensus 330 ip~rvl~m~S~eLg~aAakKyDiEAWmPgrg~ygEl~ScSNCTDyQSRRL~IRy~~~k~~~~~~~yvHtLN~TacA~~R~ 409 (455)
T KOG2509|consen 330 LPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTDYQSRRLGIRYGQKKTNDGEKKYVHTLNGTACATPRA 409 (455)
T ss_pred CceeEecCCchhhCcHHHhhcchhhhcCcccccccccccccchhHHHhhhhhhcccccccCCccceeeecchhhHhhhHH
Confidence 77622 1110 11111 11 99
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCc
Q 015587 185 IGVMVMVHGDDKGLMLPPKVASV 207 (404)
Q Consensus 185 i~~Lie~~~d~~Gl~lP~~iap~ 207 (404)
|.+|+|+|.+.+|+.+|..+-|+
T Consensus 410 l~aiLEnyQ~edGi~VPe~Lr~y 432 (455)
T KOG2509|consen 410 LCAILENYQTEDGIEVPEVLRPY 432 (455)
T ss_pred HHHhHhhccCCCCccCCHhHHhh
Confidence 99999999999999899776664
No 64
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.65 E-value=1.6e-15 Score=121.43 Aligned_cols=90 Identities=29% Similarity=0.488 Sum_probs=82.6
Q ss_pred CceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEEC
Q 015587 206 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRR 285 (404)
Q Consensus 206 p~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r 285 (404)
|+||+|++.+ +...++|.++++.||+.|++|++|++. .++|+++++|+++|+|++|+||++|+++++++++++
T Consensus 1 p~~v~ii~~~------~~~~~~a~~~~~~Lr~~g~~v~~d~~~-~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~ 73 (91)
T cd00860 1 PVQVVVIPVT------DEHLDYAKEVAKKLSDAGIRVEVDLRN-EKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTR 73 (91)
T ss_pred CeEEEEEeeC------chHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEEC
Confidence 7899999986 356789999999999999999999987 699999999999999999999999999999999999
Q ss_pred CCCceeeechhhHHHHH
Q 015587 286 DNGAKIDLPRGSLVERV 302 (404)
Q Consensus 286 ~~~~k~~v~~~el~~~i 302 (404)
.++++..++++++.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~ 90 (91)
T cd00860 74 DGGDLGSMSLDEFIEKL 90 (91)
T ss_pred CCCccceEcHHHHHHHh
Confidence 99999999988876554
No 65
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.57 E-value=3.3e-14 Score=114.39 Aligned_cols=93 Identities=25% Similarity=0.393 Sum_probs=83.0
Q ss_pred CceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEEC
Q 015587 206 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRR 285 (404)
Q Consensus 206 p~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r 285 (404)
|++|+|+|.+.++ .....++..+++.||+.|++|++|++. .++++++.+|++.|+|++++||++|+++++|+++++
T Consensus 1 p~~v~ii~~~~~~---~~~~~~a~~~~~~Lr~~g~~v~~~~~~-~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~ 76 (94)
T cd00738 1 PIDVAIVPLTDPR---VEAREYAQKLLNALLANGIRVLYDDRE-RKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSR 76 (94)
T ss_pred CeEEEEEECCCCc---HHHHHHHHHHHHHHHHCCCEEEecCCC-cCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEEC
Confidence 6789999986321 357889999999999999999999986 699999999999999999999999999999999999
Q ss_pred CCCceeeechhhHHHHH
Q 015587 286 DNGAKIDLPRGSLVERV 302 (404)
Q Consensus 286 ~~~~k~~v~~~el~~~i 302 (404)
+++++..++++++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~i 93 (94)
T cd00738 77 DTGESETLHVDELPEFL 93 (94)
T ss_pred CCCceeEEEHHHHHhhc
Confidence 99999999998876543
No 66
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.53 E-value=8.4e-14 Score=139.69 Aligned_cols=133 Identities=13% Similarity=0.149 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccccc--CcccceEEEEecCCCCCCCceeccCCChhHHHHHHH
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE--GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~--~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
..-++.+++.+++.|..+||++|.||+|++.+.+++ .++.+ .+.++||.+. +.++|||+.++.+.++++
T Consensus 239 ~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~-m~~~~g~eI~n~Iyk~e--------e~lvLRPdLTPsLaR~La 309 (453)
T TIGR02367 239 EDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIER-MGIDNDTELSKQIFRVD--------KNFCLRPMLAPNLYNYLR 309 (453)
T ss_pred ccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHh-hcCccCCcccccceEec--------CceEecccCHHHHHHHHH
Confidence 345889999999999999999999999998887754 34332 3567888763 469999999999988876
Q ss_pred hhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcce
Q 015587 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV 169 (404)
Q Consensus 96 ~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ipv 169 (404)
...+ +..+|+|+|++|+|||+| .++.+ |+|||+|.++.++|.+...++.+ .++ ..+++.|| +.+
T Consensus 310 ~N~~-~l~~PqKIFEIGkVFR~E-~~~~t--hlREF~QL~~eIaG~~atfaDle--alL---~e~Lr~LG-Idf 373 (453)
T TIGR02367 310 KLDR-ALPDPIKIFEIGPCYRKE-SDGKE--HLEEFTMLNFCQMGSGCTRENLE--AII---KDFLDHLE-IDF 373 (453)
T ss_pred Hhhh-hccCCeeEEEEcCeEecC-CCCCC--CcCeEEEEEEEEECCCCCHHHHH--HHH---HHHHHHCC-Cce
Confidence 5432 347899999999999999 45788 99999999999999877766555 344 57888887 444
No 67
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.53 E-value=1.2e-13 Score=126.96 Aligned_cols=134 Identities=24% Similarity=0.287 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhhc
Q 015587 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIR 99 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~ 99 (404)
+|+.+++.+++.+...||++|.||+|++.+.+.+ .++. .+.+..+.+..+ +..+|||+.++.+..+++++.
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~-~~~~---~~~~~~~~~~~~----~~~~LR~s~~~~l~~~~~~n~- 71 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEK-AGHE---PKDLLPVGAENE----EDLYLRPTLEPGLVRLFVSHI- 71 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHHH-cCcc---HhheeeeecCCC----CEEEECCCCcHHHHHHHHhhc-
Confidence 3788999999999999999999999999988753 4432 234555555554 789999999999999998887
Q ss_pred cCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 100 GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 100 s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
+++|+|+|++|+|||.|.. +.++.|++||.|.+++++|.....+ .++..+..++..+++.++.
T Consensus 72 --~~~~~~lfeig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~~~~~-~~~~~~~~~~~~~l~~lg~ 134 (211)
T cd00768 72 --RKLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVFGEDGEEA-SEFEELIELTEELLRALGI 134 (211)
T ss_pred --ccCCEEEEEEcceeecCCC-ccccccceeEEEcCEEEEcCCchhH-HHHHHHHHHHHHHHHHcCC
Confidence 5799999999999999964 4545689999999999998765432 3355566666788888873
No 68
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.40 E-value=1.9e-12 Score=124.62 Aligned_cols=123 Identities=9% Similarity=-0.005 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhh
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (404)
.-.++|++.+++.|+++||++|.||+||+.+++. .+++ +......+.+.+.+| +.++|||+.|++++++++...
T Consensus 8 ~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~-~~~~-~~~~~~~~~~~~~~G----r~laLRpD~T~~iAR~~a~~~ 81 (272)
T PRK12294 8 IALKESETAFLKYFNKADYELVDFSVIEKLDWKQ-LNHE-DLQQMGERSFWQHEH----QIYALRNDFTDQLLRYYSMYP 81 (272)
T ss_pred HHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhh-cccc-chhhhheeeeecCCC----CEEEEcCCCCHHHHHHHHhcC
Confidence 3467899999999999999999999999999973 2332 111222345556666 999999999999999886542
Q ss_pred ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 99 ~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
.-|.|++|+|+|||++ + +|+|.+++++|.+ .+++.|++.++ .+.+.++|
T Consensus 82 ----~~~~Rl~Y~g~VfR~~-~---------~~~Q~GvEliG~~-~~a~~e~l~la---~~~l~~~g 130 (272)
T PRK12294 82 ----TAATKVAYAGLIIRNN-E---------AAVQVGIENYAPS-LANVQQSFKLF---IQFIQQQL 130 (272)
T ss_pred ----CCCceEEEeccEeccC-C---------CcceeceEEECCC-chhHHHHHHHH---HHHHHHhC
Confidence 2467999999999998 3 2799999999966 67777777655 36666664
No 69
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.38 E-value=4.3e-12 Score=127.66 Aligned_cols=130 Identities=11% Similarity=0.114 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccccc--CcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhh
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE--GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~--~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (404)
+..|++.+++.|..+||++|.||+|.+.+.|.. .++.. .+.+++|.+. +.++|||+.++.++.+++..
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~-~g~~~g~~i~~~my~id--------eel~LRpsLtPsLlr~la~n- 275 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIER-MGIDNDTELSKQIFRVD--------KNFCLRPMLAPGLYNYLRKL- 275 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHHH-hCCCCcccchhhheeeC--------CceEehhhhHHHHHHHHHhh-
Confidence 678999999999999999999999999988854 55542 3456777752 57999999999988877654
Q ss_pred ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcce
Q 015587 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV 169 (404)
Q Consensus 99 ~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ipv 169 (404)
.++.++|+|+|++|+|||+|. ++.+ ++|||+|.++.++|.....+ ++..++ .++|+.|| +++
T Consensus 276 ~k~~~~P~RIFEIG~VFR~E~-~g~~--hlrEf~Ql~~~iiGs~~~f~--dL~~ll---eeLL~~LG-I~f 337 (417)
T PRK09537 276 DRILPDPIKIFEIGPCYRKES-DGKE--HLEEFTMVNFCQMGSGCTRE--NLENII---DDFLKHLG-IDY 337 (417)
T ss_pred hhcccCCeeEEEEeceEecCC-CCCC--CcceEEEEEEEEeCCchHHH--HHHHHH---HHHHHHCC-CCc
Confidence 344678999999999999995 4666 99999999999987654433 344444 68899887 454
No 70
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.30 E-value=2.8e-11 Score=95.88 Aligned_cols=88 Identities=23% Similarity=0.382 Sum_probs=78.5
Q ss_pred eEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCC
Q 015587 208 QVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDN 287 (404)
Q Consensus 208 qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~ 287 (404)
+|+|+|.+ +....+|.+++..||++|++|+++... .++++++.+|++.|+|+++++|+++..+++++++++++
T Consensus 3 ~v~i~~~~------~~~~~~a~~i~~~Lr~~g~~v~~~~~~-~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~ 75 (91)
T cd00859 3 DVYVVPLG------EGALSEALELAEQLRDAGIKAEIDYGG-RKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLET 75 (91)
T ss_pred cEEEEEcC------hHHHHHHHHHHHHHHHCCCEEEEecCC-CCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCC
Confidence 68888876 346678999999999999999999876 58999999999999999999999999999999999999
Q ss_pred CceeeechhhHHHHH
Q 015587 288 GAKIDLPRGSLVERV 302 (404)
Q Consensus 288 ~~k~~v~~~el~~~i 302 (404)
+++..++++++.+.+
T Consensus 76 ~~~~~~~~~~~~~~~ 90 (91)
T cd00859 76 GEQETVALDELVEEL 90 (91)
T ss_pred CCcEEEeHHHHHHHh
Confidence 999889888776544
No 71
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.24 E-value=2.3e-11 Score=126.73 Aligned_cols=142 Identities=15% Similarity=0.089 Sum_probs=105.5
Q ss_pred CccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccCh-----hhHh--------------hhcccccCc-ccc---
Q 015587 8 SGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSP-----TVLQ--------------KEKDHIEGF-APE--- 64 (404)
Q Consensus 8 ~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~-----~l~~--------------k~~g~~~~f-~~e--- 64 (404)
.| .+++|.....+..+.+.+++.|..+||+++.+|++++. +||. .+.+..... .+.
T Consensus 223 ~~-~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~ 301 (489)
T PRK04172 223 PP-PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVER 301 (489)
T ss_pred CC-CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHH
Confidence 44 78999999999999999999999999999999999965 3332 211100000 011
Q ss_pred ----------------eEEEEecCCCCCCCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCcccc
Q 015587 65 ----------------VAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRS 128 (404)
Q Consensus 65 ----------------~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~ 128 (404)
+|.+.+.++ +.++|||..|++..++++.+ ...|+|+|++|+|||+|. ++.+ |+
T Consensus 302 v~~~he~g~~~~~~~~~y~~~~~~~----~~~~LR~~~T~~~~r~l~~~----~~~p~rlFeiGrVFR~e~-~d~~--~l 370 (489)
T PRK04172 302 VKEVHEHGGDTGSRGWGYKWDEDIA----KRLVLRTHTTALSARYLASR----PEPPQKYFSIGRVFRPDT-IDAT--HL 370 (489)
T ss_pred HHHHHhccCCCCCccccCCcchhhh----hccccccCChHHHHHHHHhc----CCCCeEEEEecceEcCCC-CCcc--cC
Confidence 344444444 78999999999999988762 367999999999999994 5777 88
Q ss_pred ceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 129 REFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 129 REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
|||+|.++.+++.... ..++..++ ..++..+|.
T Consensus 371 ~Ef~ql~~~i~G~~~~--f~elkg~l---~~ll~~lGi 403 (489)
T PRK04172 371 PEFYQLEGIVMGEDVS--FRDLLGIL---KEFYKRLGF 403 (489)
T ss_pred CchheEEEEEEeCCCC--HHHHHHHH---HHHHHHhCC
Confidence 9999999999887432 44555555 578888874
No 72
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=5.9e-11 Score=122.18 Aligned_cols=115 Identities=28% Similarity=0.430 Sum_probs=104.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCC-CEEEEeCCCCCChhHHHHHHHH
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAG-IRANSDFRDNYSPGWKYSHWEM 261 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~G-irv~~D~~~~~s~g~k~~~ae~ 261 (404)
|+++++++.+.|++|++||..+||+++.|++++.++ .+....+.+++..|...| ..|.+|+++ .++|.++.+|+.
T Consensus 383 r~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~~---~~~~~~~~~~~~~l~~~G~~e~~~ddr~-er~g~k~~~a~l 458 (500)
T COG0442 383 RLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTKD---FKQAEAAEKLYVELPWCGTVEVLLDDRD-ERPGVKFADADL 458 (500)
T ss_pred hHHHHHHHHhcccccCccccccCcceeEEEEcCchh---HHHHHHhhhHHHHHHhCCchhhhhhhhc-cccCccccCCeE
Confidence 999999999999999999988999999999997542 566777889999999999 999999998 489999999999
Q ss_pred cCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHH
Q 015587 262 KGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERV 302 (404)
Q Consensus 262 ~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i 302 (404)
.|+|+++++|++ .++|.|.++.|.+|++..++...+.+.+
T Consensus 459 iGiP~~~~~g~~-~~~g~~e~k~r~~ge~~~~~~~~l~~~~ 498 (500)
T COG0442 459 IGIPLRIVVGKR-LAEGEVEVKCRKCGEKEAVTIEALFARL 498 (500)
T ss_pred ecccceeeeccc-ccCCceeEEecCCCchhhccHHHHHHHh
Confidence 999999999999 8899999999999999888877776654
No 73
>PRK07080 hypothetical protein; Validated
Probab=98.88 E-value=3.8e-08 Score=95.12 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=108.6
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcC----ceEeccCcccChhhHhhhcccccCcccceEEEEecCCCC------
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMK----IQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESD------ 75 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G----~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~------ 75 (404)
.+.|.|-. ..+++.|.+.++..+.++| ++++.+|-+.|.+.|+| ++++++|-..++.+..-.+.+
T Consensus 35 g~~g~ygr----s~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek-~~Y~ksFP~l~~~V~~~~g~~~e~~~l 109 (317)
T PRK07080 35 GVDGLYGR----SGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFER-SGYLKSFPQLAGTVHSFCGNEAEHRRL 109 (317)
T ss_pred CCCccccc----cHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHh-cChhhhCcccceeecCCCCCCHHHHHH
Confidence 45566543 3456777777777777777 99999999999999965 999999998888775422111
Q ss_pred --------------CCCceeccCCChhHHHHHHHhh-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeec
Q 015587 76 --------------LEVPIAIRPTSETVMYPYFSKW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 140 (404)
Q Consensus 76 --------------l~~~l~LRPt~e~~i~~~~~~~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~ 140 (404)
-...++|.|..|.++|++++.. ... .+- ..+--.|.|||||. ..++-|..+|+|-|.-.+|
T Consensus 110 l~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp-~~g-~~~dv~g~CFR~E~--s~dl~Rl~~F~mrE~V~iG 185 (317)
T PRK07080 110 LACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALP-ADG-RLVDVASYCFRHEP--SLDPARMQLFRMREYVRIG 185 (317)
T ss_pred HHHHHhcCchhhhcCCCcceecccccccchhhhccCcccC-CCC-cEEEeeeeeeccCC--CCCcHHHhheeeeEEEEec
Confidence 1247999999999999988754 221 121 45556899999994 4788999999999999877
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhCCcce
Q 015587 141 ATKSEADDEVLQILELYRRIYEEFLAVPV 169 (404)
Q Consensus 141 ~~~~~a~~e~~~~~~~y~~~~~~l~~ipv 169 (404)
+++++.+--...++....+.+.|+ +++
T Consensus 186 -t~e~v~~~r~~w~e~~~~l~~~Lg-L~~ 212 (317)
T PRK07080 186 -TPEQIVAFRQSWIERGTAMADALG-LPV 212 (317)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHhC-Cce
Confidence 555663333334455556667765 554
No 74
>PRK09350 poxB regulator PoxA; Provisional
Probab=98.83 E-value=7.3e-09 Score=101.75 Aligned_cols=118 Identities=15% Similarity=0.065 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEe-cCCCCCCCceecc--CCChhHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK-SGESDLEVPIAIR--PTSETVMYPY 93 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~-~g~~~l~~~l~LR--Pt~e~~i~~~ 93 (404)
-.+++..|.+.+++.|.+.||.+|.||+|+..... ..+...|..+ |.+.+ .+| +.++|| |+.+ +.++
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~---~~~~~~f~~~-y~~~~~~~~----~~~~L~~SPe~~--~kr~ 73 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATVT---DIHLVPFETR-FVGPGASQG----KTLWLMTSPEYH--MKRL 73 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCC---CccCCceeee-eccccccCC----cceEEecCHHHH--HHHH
Confidence 46789999999999999999999999999875543 2233334444 44434 334 788999 6543 3333
Q ss_pred HHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 94 FSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 94 ~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
++ + .+ -|+||+|+|||+|.. +.+ +..||+|.|.+.++.+..+....+..++
T Consensus 74 la----~--~~-~rvf~i~~~FR~e~~-~~~--H~~EFt~lE~y~~~~d~~dlm~~~E~li 124 (306)
T PRK09350 74 LA----A--GS-GPIFQICKSFRNEEA-GRY--HNPEFTMLEWYRPHYDMYRLMNEVDDLL 124 (306)
T ss_pred hh----c--cc-cceEEecceeecCCC-CCC--CCcHHHhhhhhhhCCCHHHHHHHHHHHH
Confidence 32 2 13 399999999999976 677 9999999999999988777766666655
No 75
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.81 E-value=4.1e-08 Score=94.73 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec-CCCCCCCceeccCCChhHHHHHHHhh
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~-g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
+++..|.+.+++.|.+.||.+|.||+|+... +| +- -+.|.+... +| +.+.|+-..+-..-.+
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~-----~~---~~-~~~f~~~~~~~g----~~~~L~~Spql~~~~~---- 64 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT-----GG---AG-ARPFLVKYNALG----LDYYLRISPQLFKKRL---- 64 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccC-----Cc---cc-cceEEeeecCCC----CcEEeecCHHHHHHHH----
Confidence 5788999999999999999999999998642 21 11 145666432 34 7888984433222221
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.+. +. |+||+++|||+| .++.+ |++||+|.|++..+.+-.+....+..++
T Consensus 65 ~~~~--~~-~vf~i~~~fR~e-~~~~~--hl~EF~~le~e~~~~~~~dvm~~~e~lv 115 (269)
T cd00669 65 MVGG--LD-RVFEINRNFRNE-DLRAR--HQPEFTMMDLEMAFADYEDVIELTERLV 115 (269)
T ss_pred HhcC--CC-cEEEEecceeCC-CCCCC--cccceeEEEEEEecCCHHHHHHHHHHHH
Confidence 2221 22 999999999999 66888 9999999999998887777666665554
No 76
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.78 E-value=7.5e-08 Score=99.10 Aligned_cols=145 Identities=14% Similarity=0.093 Sum_probs=100.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhh-----hcccccCcccceEEEEec-----------------
Q 015587 14 RPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQK-----EKDHIEGFAPEVAWVTKS----------------- 71 (404)
Q Consensus 14 ~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k-----~~g~~~~f~~e~~~~~~~----------------- 71 (404)
.+-...-...+.+.+++.|...||+++.+|-.+-++.|.= -..|-.--..+.|.+.+.
T Consensus 224 ~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk 303 (494)
T PTZ00326 224 GGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVK 303 (494)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHH
Confidence 3444556778899999999999999999875444444421 122211111234555421
Q ss_pred -----CC-----------CCCCCceeccCCChhHHHHHHHhhhccC---CC-CCeEEEeeeceeecCCCCCCCcccccee
Q 015587 72 -----GE-----------SDLEVPIAIRPTSETVMYPYFSKWIRGH---RD-LPLKLNQWCNVVRWEFSNPTPFIRSREF 131 (404)
Q Consensus 72 -----g~-----------~~l~~~l~LRPt~e~~i~~~~~~~i~s~---~~-lPlk~~q~~~vfR~E~~~~~gllR~REF 131 (404)
|+ .+....++||+..|+..++++..+.+.+ .. .|+|++++|+|||+|. +..+ |++||
T Consensus 304 ~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~-~Dat--H~~eF 380 (494)
T PTZ00326 304 KVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNET-LDAT--HLAEF 380 (494)
T ss_pred HHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCC-CCCC--cCcee
Confidence 10 1112579999998888899888765431 12 3999999999999994 6888 99999
Q ss_pred EEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 132 LWQEGHTAFATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 132 ~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
+|.|+.+++.+. ++++++.++ ..+|+.+|.
T Consensus 381 hQ~Eg~vi~~~~--s~~~L~~~l---~~f~~~lG~ 410 (494)
T PTZ00326 381 HQVEGFVIDRNL--TLGDLIGTI---REFFRRIGI 410 (494)
T ss_pred EEEEEEEEeCCC--CHHHHHHHH---HHHHHhcCC
Confidence 999999988775 566776666 588888874
No 77
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=98.41 E-value=1.9e-06 Score=83.66 Aligned_cols=119 Identities=14% Similarity=0.116 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec--CCCCCCCceeccCCChhHHHHHHHh
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS--GESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~--g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
+++..|.+.+|+.|.+.||.||.||+|....- +.+ .+ |.+... ++ ..+.|+- |.. ++.+
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~---~g~-----~~--f~~~~~~~~~----~~~~L~~-Spq----l~lk 62 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP---EGA-----RD--FLVPSRLHPG----KFYALPQ-SPQ----LFKQ 62 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC---CCC-----CC--ceeccccCCC----ceeeccc-CHH----HHHH
Confidence 57889999999999999999999999975332 111 11 222111 12 3444553 322 2333
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
.+.+. .+ =|+||++++||+|.. +.+ |..||+|.|++.++.+-.+....+..++ ..++..+
T Consensus 63 ~ll~~-g~-~~v~~i~~~fR~e~~-~~~--r~~Ef~~~e~e~~~~~~~dlm~~~e~li---~~i~~~~ 122 (280)
T cd00777 63 LLMVS-GF-DRYFQIARCFRDEDL-RAD--RQPEFTQIDIEMSFVDQEDIMSLIEGLL---KYVFKEV 122 (280)
T ss_pred HHHhc-Cc-CcEEEeccceeCCCC-CCC--ccceeEEeEeeeccCCHHHHHHHHHHHH---HHHHHHH
Confidence 32211 12 389999999999964 667 9999999999999998777777776665 3444443
No 78
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=98.35 E-value=7.6e-06 Score=81.47 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+++.|.+.||.+|.||+|..... ++ .-+.|.+....+.-.+++..|+...+-.+-.+.+.
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~--------~~-~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~ 91 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTC--------EG-GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAA 91 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSS--------SS-SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeecccc--------Cc-cccccccccchhhhcccceecCcChHHHHhhhccc
Confidence 4678999999999999999999999999977532 12 34567766211111237788888776443333332
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
. + =|+||+|+|||.|...+. .-.-||+|.|.+.++++..+..+.+..++
T Consensus 92 g------~-~~vf~i~~~FR~E~~~~~--rHl~EFtmLE~e~a~~~~~~lm~~~e~li 140 (335)
T PF00152_consen 92 G------L-ERVFEIGPCFRNEESRTR--RHLPEFTMLEWEMAFADYDDLMDLIEELI 140 (335)
T ss_dssp T------H-SEEEEEEEEE-BSSSCBT--TBSSEEEEEEEEEETSSHHHHHHHHHHHH
T ss_pred c------c-hhhhheecceeccCcccc--cchhhhhhhhhccccCcHHHhHHHHHHHH
Confidence 2 2 389999999999965122 14669999999999999888777776665
No 79
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.31 E-value=4.3e-06 Score=82.81 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+++.|.+.||.+|.||+|+.... .++.+.| .+.. -+ +++.|+...+-..-.
T Consensus 23 ~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~----e~~~~~f-----~~~~-~~----~~~yL~~Spql~lk~---- 84 (322)
T cd00776 23 IFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT----EGGAELF-----KVSY-FG----KPAYLAQSPQLYKEM---- 84 (322)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC----CccCCcc-----cccc-CC----CcceecCCHHHHHHH----
Confidence 3678899999999999999999999999987332 1233333 2211 12 667787554422211
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC-ChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~e~~~~~ 154 (404)
.+.+ -=|+||+|+|||.|...+.- ..-||+|.|.+.+++ +-.+....+..++
T Consensus 85 l~~~----~~~vf~i~~~FR~E~~~~~r--Hl~EFtmlE~e~~~~~~~~dlm~~~e~ll 137 (322)
T cd00776 85 LIAA----LERVYEIGPVFRAEKSNTRR--HLSEFWMLEAEMAFIEDYNEVMDLIEELI 137 (322)
T ss_pred HHHh----hhhhEEeccccccCCCCcCC--CcceeeccceeeeccCCHHHHHHHHHHHH
Confidence 1222 13889999999999643322 578999999999998 7777766666655
No 80
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.16 E-value=1.5e-05 Score=76.00 Aligned_cols=135 Identities=16% Similarity=0.108 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccCh-hhHhh---hcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHH
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSP-TVLQK---EKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPY 93 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~-~l~~k---~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~ 93 (404)
..-.+.+.+.+++.|...||+++..|.+++. ..|.+ ...|-.--..+.|++..... ..++..+||+..++...+.
T Consensus 16 ~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~-~~~~~~vLRThts~~~~~~ 94 (247)
T PF01409_consen 16 LHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYS-AEEDYSVLRTHTSPGQLRT 94 (247)
T ss_dssp TSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSB-CECSSEEE-SSTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeecccc-ccchhhhhhhhhhHHHHHH
Confidence 3456788899999999999999999999653 33432 12222111223455533211 0137899999877776666
Q ss_pred HHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh-C
Q 015587 94 FSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF-L 165 (404)
Q Consensus 94 ~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l-~ 165 (404)
+ .+++..|+|++.+|.|||.|.-... .+.+|+|.|+-.++.+-. -.++..++ ..+++.+ |
T Consensus 95 l----~~~~~~p~kif~iG~VyR~D~~D~t---h~~~f~Qleg~~~~~~~~--f~~Lk~~l---~~l~~~lfG 155 (247)
T PF01409_consen 95 L----NKHRPPPIKIFEIGKVYRRDEIDAT---HLPEFHQLEGLVVDKNVT--FEDLKGTL---EELLKELFG 155 (247)
T ss_dssp H----TTTSHSSEEEEEEEEEESSSCSBSS---BESEEEEEEEEEEETTE---HHHHHHHH---HHHHHHHHT
T ss_pred H----HHhcCCCeEEEecCceEecCCcccc---cCccceeEeeEEEecccc--hhHHHHHH---HHHHHHHhh
Confidence 5 4556789999999999999964333 588999999988775432 23344444 5777777 5
No 81
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=98.15 E-value=1e-05 Score=79.59 Aligned_cols=117 Identities=17% Similarity=0.115 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh-h
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK-W 97 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~-~ 97 (404)
++|..|.+.+++.|.+.||.+|.||+|++...= -++.+ .|.+..-+......+..|+-.++- +.+ -
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~---e~~~~-----~F~~~y~~~~~~~~~~yL~~Spql-----~lk~l 68 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPVT---DPHLD-----AFATEFLGPDGEGRPLYLQTSPEY-----AMKRL 68 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCCC---CcCCc-----ceeeeccCCCCCCcceeeecCHHH-----HHHHH
Confidence 578999999999999999999999999875320 11222 233322110012256777655442 333 2
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.+ .+ =|+|++|+|||+|....+ ..-||+|.|++.++.+-.+....+..++
T Consensus 69 l~~--g~-~rVfeigp~FRaE~~~~r---Hl~EFtmLE~e~~~~d~~d~m~~~e~li 119 (304)
T TIGR00462 69 LAA--GS-GPIFQICKVFRNGERGRR---HNPEFTMLEWYRPGFDYHDLMDEVEALL 119 (304)
T ss_pred Hhc--cC-CCEEEEcCceeCCCCCCC---cccHHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 222 22 489999999999976322 6789999999998887776666555554
No 82
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.14 E-value=2.7e-05 Score=77.41 Aligned_cols=115 Identities=11% Similarity=0.089 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEE-ecCCCCCCCceeccCCChhHHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVT-KSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~-~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
-.+++..|.+.+|+.|...||.+|.||+|.+..- .++. +.|.+. +..+ .+..|+-.++-. .+
T Consensus 7 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----~~~~-----~~f~~~~~~~~----~~~yL~~Spql~----~k 69 (329)
T cd00775 7 TFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAG----GAAA-----RPFITHHNALD----MDLYLRIAPELY----LK 69 (329)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccccCCC----Cccc-----eeEEeccCCCC----cceeeccCHHHH----HH
Confidence 3578899999999999999999999999976531 1111 234332 2222 667776444321 12
Q ss_pred hhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 96 ~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
..+.+ .+ =++||+|+|||.|.... -+.-||+|.|.+..+.+..+....+..++
T Consensus 70 ~ll~~--g~-~~vf~i~~~FR~E~~~~---rHl~EFt~le~e~~~~~~~~~m~~~e~li 122 (329)
T cd00775 70 RLIVG--GF-ERVYEIGRNFRNEGIDL---THNPEFTMIEFYEAYADYNDMMDLTEDLF 122 (329)
T ss_pred HHHhc--CC-CcEEEEeccccCCCCCC---CCCCceEEEEEeeecCCHHHHHHHHHHHH
Confidence 22222 22 58999999999996533 36889999999998888777777776665
No 83
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=98.10 E-value=2.3e-05 Score=82.96 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec--CCCCCCCceeccCCChhHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS--GESDLEVPIAIRPTSETVMYPYF 94 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~--g~~~l~~~l~LRPt~e~~i~~~~ 94 (404)
-++++..|.+.+|+.|...||.||.||+|.+..- + |-. + |.+... ++ .-++|+ .|.. +|
T Consensus 137 ~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~---e-----Gar-~-f~vp~~~~~~----~~y~L~-qSpQ----ly 197 (583)
T TIGR00459 137 RLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP---E-----GAR-D-YLVPSRVHKG----EFYALP-QSPQ----LF 197 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC---C-----CCc-c-eeeeeecCCC----ceeecC-CCHH----HH
Confidence 3578999999999999999999999999975321 1 111 1 222221 22 345565 4432 34
Q ss_pred HhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 95 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 95 ~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
.+.+.. ..+ =|+||+|+|||+|.. ... |.-||+|.|++.++++.++....+..++ ..+++.+
T Consensus 198 kq~l~v-~G~-ervfqI~~~FR~E~~-~t~--r~pEFT~le~E~af~d~~dvm~~~E~li---~~v~~~v 259 (583)
T TIGR00459 198 KQLLMV-SGV-DRYYQIARCFRDEDL-RAD--RQPEFTQIDMEMSFMTQEDVMELIEKLV---SHVFLEV 259 (583)
T ss_pred HHHHHh-ccc-CcEEEEcceeeCCCC-CCC--CCcccCcceeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 443221 122 389999999999965 446 8899999999999998777766666655 3555554
No 84
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=98.06 E-value=4.4e-05 Score=78.56 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHH
Q 015587 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
.-++++..|.+.+|+.|.+.||.||.||+|..... -|+. +.|.++.-+ .++.|+-..+ ++.
T Consensus 131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----eg~~-----~~f~v~~~~-----~~~yL~~Spq-----l~~ 191 (428)
T TIGR00458 131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT----EGGT-----ELFPITYFE-----REAFLGQSPQ-----LYK 191 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC----CCCc-----ceeeeEecC-----CcEEECcCHH-----HHH
Confidence 34678899999999999999999999999974321 1222 345554433 5567764443 233
Q ss_pred hh-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 96 KW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 96 ~~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+. +.+ .+ =|+||+|++||+|...+.= -.-||+|.|++.++++..+....+..++
T Consensus 192 q~li~~--g~-~rVf~i~~~FR~E~~~t~r--Hl~EFt~lE~e~a~~~~~dlm~~~e~li 246 (428)
T TIGR00458 192 QQLMAA--GF-ERVYEIGPIFRAEEHNTHR--HLNEATSIDIEMAFEDHHDVMDILEELV 246 (428)
T ss_pred HHHHhc--cc-CcEEEEecccccCCCCCcc--chheeeEeeeeeccCCHHHHHHHHHHHH
Confidence 32 222 22 4899999999999654321 3469999999999988876666655554
No 85
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=4.1e-05 Score=78.94 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-.+++.++...+|+.+...||.+|+||+|..+. - ||-.+ |-|-.+-.. ++-|+| |-|-. +|++
T Consensus 140 ~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkST------P--EGARD--fLVPSRv~~--G~FYAL-PQSPQ----lfKQ 202 (585)
T COG0173 140 NLKLRSKVTKAIRNFLDDQGFLEIETPILTKST------P--EGARD--FLVPSRVHP--GKFYAL-PQSPQ----LFKQ 202 (585)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEeecCccccCC------C--ccccc--cccccccCC--Cceeec-CCCHH----HHHH
Confidence 357889999999999999999999999995422 1 22222 222211110 034444 66543 4555
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
.+.-- .+ =|+|||+.|||+| -.+.- |.=||+|.|+++-+.+.++...-+..++ ..+|++...
T Consensus 203 LLMvs-Gf-dRYyQIarCFRDE-DlRaD--RQPEFTQiD~EmSF~~~edv~~~~E~l~---~~vf~~~~~ 264 (585)
T COG0173 203 LLMVA-GF-DRYYQIARCFRDE-DLRAD--RQPEFTQIDLEMSFVDEEDVMELIEKLL---RYVFKEVKG 264 (585)
T ss_pred HHHHh-cc-cceeeeeeeeccc-ccccc--cCCcceeEeEEeecCCHHHHHHHHHHHH---HHHHHHhcC
Confidence 44321 11 3899999999999 44556 8899999999999999888777666666 577776643
No 86
>PRK06462 asparagine synthetase A; Reviewed
Probab=98.03 E-value=4e-05 Score=76.34 Aligned_cols=120 Identities=10% Similarity=-0.005 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccC---cccceEEEEecCCCCCCCceeccCCChhHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG---FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPY 93 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~---f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~ 93 (404)
-++++..|.+.+|+.|.+.||.+|.||+|.+.. ..+..+ -.-..+.+..- | .++.|++..+-
T Consensus 29 il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~-----~~~~~~g~~~~~~~~~~~~~-~----~~~yL~~Spql----- 93 (335)
T PRK06462 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISPST-----DPLMGLGSDLPVKQISIDFY-G----VEYYLADSMIL----- 93 (335)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCC-----CCCCCccccCCccccccccC-C----CceeeccCHHH-----
Confidence 467889999999999999999999999997641 111111 00012222211 2 67888765542
Q ss_pred HHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 94 FSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 94 ~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+++.+.+- + =|+||+|++||.|...+.+=-..-||+|.|.+.++++-.+..+.+..++
T Consensus 94 ~k~ll~~g--~-~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv 151 (335)
T PRK06462 94 HKQLALRM--L-GKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLI 151 (335)
T ss_pred HHHHHHhh--c-CcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHH
Confidence 23322211 2 4899999999999765511116789999999998988777766666555
No 87
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=2.2e-05 Score=74.72 Aligned_cols=129 Identities=15% Similarity=0.035 Sum_probs=93.1
Q ss_pred cEEeCch----HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 10 CYIMRPW----AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 10 ~~~~~P~----g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
...|.|. ....|.+|++.+|..|...||.||+||+|...-.- --|+..|.-+...-.+.+ ...+.|.+.
T Consensus 4 ~~~W~p~~~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vt---d~hL~~F~Te~~~~~~~~----~~~l~L~TS 76 (322)
T COG2269 4 TPWWQPSASIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVT---DIHLHPFETEFLGPGGAK----GKPLWLHTS 76 (322)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCC---ccceeeeeeEEeccCccc----cceeeeecC
Confidence 3456663 45679999999999999999999999999654332 235666665543322222 378899888
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILE 155 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~ 155 (404)
-|-.+-++.+... -.+||+|.|||++.. |=+--=||+|.|-+.+|++......|+..+++
T Consensus 77 PEy~mKrLLAag~-------~~ifql~kvfRN~E~---G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~ 136 (322)
T COG2269 77 PEYHMKRLLAAGS-------GPIFQLGKVFRNEEM---GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQ 136 (322)
T ss_pred cHHHHHHHHHccC-------CcchhhhHHHhcccc---cccCCCceeEeeeeccCCcHHHHHHHHHHHHH
Confidence 7866665554432 357999999999954 52234599999999999999888888777664
No 88
>PLN02903 aminoacyl-tRNA ligase
Probab=97.98 E-value=5.9e-05 Score=80.52 Aligned_cols=122 Identities=15% Similarity=0.154 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHh-cCceEeccCcccChhhHhhhcccccCcccceEEEEec-CCCCCCCceeccCCChhHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKK-MKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GESDLEVPIAIRPTSETVMYPYF 94 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~-~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~-g~~~l~~~l~LRPt~e~~i~~~~ 94 (404)
-++++..|.+.+|+.|.. .||-||.||+|....- + |-. +.+..... .+ ..++|+ .|.. +|
T Consensus 202 ~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~---e-----Gar-df~v~~~~~~g----~~y~L~-qSPQ----ly 263 (652)
T PLN02903 202 NLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP---E-----GAR-DYLVPSRVQPG----TFYALP-QSPQ----LF 263 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC---C-----CCc-ccEEeeecCCC----cccccC-CCHH----HH
Confidence 467899999999999986 9999999999975332 1 111 22322221 12 445565 4432 34
Q ss_pred HhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 95 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 95 ~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
++.+.. ..+ =|+||+++|||+|.. ... |.-||+|.|++..+.+.++....+..++ ..+++.+
T Consensus 264 kQ~Lm~-~G~-~RvFqIa~~FR~E~~-~t~--RhpEFTqLE~E~sf~d~~dvm~~~E~li---~~v~~~~ 325 (652)
T PLN02903 264 KQMLMV-SGF-DRYYQIARCFRDEDL-RAD--RQPEFTQLDMELAFTPLEDMLKLNEDLI---RQVFKEI 325 (652)
T ss_pred HHHHHh-ccC-CcEEEEehhhccCCC-CCC--cccceeeeeeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 443221 112 489999999999965 345 8899999999999998777777766665 3555544
No 89
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=97.98 E-value=5.1e-05 Score=80.81 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec--CCCCCCCceeccCCChhHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS--GESDLEVPIAIRPTSETVMYPYF 94 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~--g~~~l~~~l~LRPt~e~~i~~~~ 94 (404)
-.+++..|.+.+|+.|.+.||-||.||+|.+..- ++-. + |.+..+ .+ ..++|+ +|.. ++
T Consensus 140 ~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~--------ega~-~-f~v~~~~~~~----~~~~L~-qSpq----l~ 200 (588)
T PRK00476 140 NLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP--------EGAR-D-YLVPSRVHPG----KFYALP-QSPQ----LF 200 (588)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC--------CCCc-c-ceecccccCC----ceeecC-CCHH----HH
Confidence 3577899999999999999999999999986421 1111 1 322211 12 445554 4432 23
Q ss_pred HhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 95 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 95 ~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
.+.+.. ..+ =|+||+|+|||+|.. ... |.-||+|.|++..+.+.++....+..++ ..+++.+
T Consensus 201 kq~l~~-~g~-~rvfqi~~~FR~E~~-~~~--r~~EFt~le~e~af~~~~dvm~~~E~li---~~i~~~~ 262 (588)
T PRK00476 201 KQLLMV-AGF-DRYYQIARCFRDEDL-RAD--RQPEFTQIDIEMSFVTQEDVMALMEGLI---RHVFKEV 262 (588)
T ss_pred HHHHHh-ccc-CceEEEeceeecCCC-CCC--cCcccccceeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 333221 122 489999999999964 445 7779999999999998877777766665 3555544
No 90
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=97.98 E-value=8.1e-05 Score=77.79 Aligned_cols=123 Identities=13% Similarity=0.117 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHH
Q 015587 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
.-++++..|.+.+|+.|...||.+|.||+|.+.. .| -+-+.|.+.... ++.++.|+-.++ ++.
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----~G----a~a~pF~t~~~~---~~~~~yL~~Spq-----l~l 232 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA-----GG----AAARPFITHHNA---LDIDLYLRIAPE-----LYL 232 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceeccC-----CC----ccceeeeecccc---CCCceEeccCHH-----HHH
Confidence 3467899999999999999999999999997532 22 111233321111 125667764433 233
Q ss_pred hhh-ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 96 KWI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 96 ~~i-~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+.+ .+ .+ =|+||+|++||+|...+ -+.-||+|.|++.++++..+....+..++ ..+++.+
T Consensus 233 k~l~v~--g~-~rVfei~~~FR~E~~~~---rH~pEFt~lE~e~a~~d~~d~m~~~E~li---~~i~~~~ 293 (491)
T PRK00484 233 KRLIVG--GF-ERVYEIGRNFRNEGIDT---RHNPEFTMLEFYQAYADYNDMMDLTEELI---RHLAQAV 293 (491)
T ss_pred HHHHhc--cC-CcEEEEecceecCCCCC---CcCCceEEEEEEEecCCHHHHHHHHHHHH---HHHHHHH
Confidence 322 22 12 48999999999997644 37889999999999988777766666555 3444443
No 91
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=97.93 E-value=8.9e-05 Score=76.51 Aligned_cols=114 Identities=14% Similarity=0.167 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|.+.||.||.||+|..... .|+. +.|.+..- | ..+.|+-..+ ++.+
T Consensus 135 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----eg~~-----~~f~~~~~-~----~~~~L~~Spq-----l~~q 195 (437)
T PRK05159 135 IFKIRSEVLRAFREFLYENGFTEIFTPKIVASGT----EGGA-----ELFPIDYF-E----KEAYLAQSPQ-----LYKQ 195 (437)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCC----CCCc-----ceEeEEec-C----CceEecCCHH-----HHHH
Confidence 4678999999999999999999999999954211 1222 24444322 2 6677865543 2333
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccc-cceeEEeceeeecCC-hhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR-SREFLWQEGHTAFAT-KSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR-~REF~q~e~~~~~~~-~~~a~~e~~~~~ 154 (404)
.+.+ ..+ =|+||++++||+|...+ . | .-||+|.|.+.++.+ ..+....+..++
T Consensus 196 ~l~~-~g~-~rVf~i~~~FR~E~~~t-~--rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv 250 (437)
T PRK05159 196 MMVG-AGF-ERVFEIGPVFRAEEHNT-S--RHLNEYTSIDVEMGFIDDHEDVMDLLENLL 250 (437)
T ss_pred HHHh-cCC-CcEEEEeceeeCCCCCC-c--ccchhhheeeeeeeecccHHHHHHHHHHHH
Confidence 3322 122 48999999999996532 2 3 469999999998987 777766666555
No 92
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=97.92 E-value=9.9e-05 Score=78.27 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.||.||+|.+.. .| -+-.-|. ++.. .++.++.||-..+-.+= .
T Consensus 252 ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~-----GG----A~a~PF~-T~~n--~~d~~lYLriSpEL~lK----r 315 (585)
T PTZ00417 252 TFITRTKIINYLRNFLNDRGFIEVETPTMNLVA-----GG----ANARPFI-THHN--DLDLDLYLRIATELPLK----M 315 (585)
T ss_pred HHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC-----Cc----ccceeEE-eccc--CCCcceEEeecHHHHHH----H
Confidence 467899999999999999999999999997741 12 1111122 2111 13477888865543222 2
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.+.+ .+ =|+|++|++||+|...++ ..-||+|.|.+.++++..+....+..++
T Consensus 316 Llvg--G~-~rVfeIgp~FRnE~~~~r---HnpEFTmlE~y~ay~dy~dlM~l~E~Li 367 (585)
T PTZ00417 316 LIVG--GI-DKVYEIGKVFRNEGIDNT---HNPEFTSCEFYWAYADFYDLIKWSEDFF 367 (585)
T ss_pred HHHh--CC-CCEEEEcccccCCCCCCC---ccceeeeeeeeeecCCHHHHHHHHHHHH
Confidence 2222 12 389999999999975443 6779999999999988777776666655
No 93
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=0.00021 Score=79.65 Aligned_cols=133 Identities=15% Similarity=0.055 Sum_probs=103.3
Q ss_pred EEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHH
Q 015587 11 YIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVM 90 (404)
Q Consensus 11 ~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i 90 (404)
..+.|.-..+++.+...+-++|+++|+.++.||.+.+..- - ..+..+.+.|-|+|| ..+.|-.+....+
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~-----~--~~~~~~~v~~ld~sG----~~v~Lp~DLr~pf 993 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLRNA-----C--AYFSRKAVELLDHSG----DVVELPYDLRLPF 993 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccccc-----c--chhccceeeeecCCC----CEEEeeccccchH
Confidence 3566778888999999999999999999999996544221 1 246677888999998 8888888888888
Q ss_pred HHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH-HHHHHHHHH
Q 015587 91 YPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL-ELYRRIYEE 163 (404)
Q Consensus 91 ~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~-~~y~~~~~~ 163 (404)
+++++.+. .+-+|.|.++-|||-+. ...| +|+++++.++++.+..-.++|++.++ ++...+|.+
T Consensus 994 ar~vs~N~----~~~~Kry~i~rVyr~~~-~~hP----~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~ 1058 (1351)
T KOG1035|consen 994 ARYVSRNS----VLSFKRYCISRVYRPAI-HNHP----KECLECDFDIIGPTTSLTEAELLKVIVEITTEILHE 1058 (1351)
T ss_pred HHHhhhch----HHHHHHhhhheeecccc-cCCC----ccccceeeeEecCCCCccHHHHHHHHHHHHHHHhcc
Confidence 77776552 35689999999999885 3344 78999999999998778899998876 344444443
No 94
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=97.90 E-value=0.00016 Score=71.55 Aligned_cols=128 Identities=15% Similarity=0.107 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCceEeccCcccChh-hHhh---hcccccCcccceEEEEecCCCCCCCceeccCCChhHHH
Q 015587 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPT-VLQK---EKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMY 91 (404)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~-l~~k---~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~ 91 (404)
-...-...+.+.+++.|...||+++.+|.+++.. .|.+ ..+|-.--..+.|++. +..+||....+...
T Consensus 105 G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~--------~~~lLRThTSp~qi 176 (339)
T PRK00488 105 GSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYID--------DGLLLRTHTSPVQI 176 (339)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEc--------CCceeeccCcHHHH
Confidence 3445678899999999999999999999998654 2321 1222110111355562 56899987666666
Q ss_pred HHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 92 PYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 92 ~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+.+++ ..+|+|++..|.|||.+..... ++.+|+|.|+-+++.+-. -+++..++ ..+++.+
T Consensus 177 r~L~~-----~~~Pirif~~G~VyR~D~~Dat---H~~~FhQleglvvd~~vt--f~dLK~~L---~~fl~~~ 236 (339)
T PRK00488 177 RTMEK-----QKPPIRIIAPGRVYRNDSDDAT---HSPMFHQVEGLVVDKNIS--FADLKGTL---EDFLKAF 236 (339)
T ss_pred HHHHh-----cCCCeEEEEeeeEEEcCCCCcc---cCcceeeEEEEEEeCCCC--HHHHHHHH---HHHHHHH
Confidence 65544 4689999999999999952222 688999999988876532 34555555 3555555
No 95
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=97.90 E-value=0.00013 Score=70.42 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=81.5
Q ss_pred CceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccc------cCCCe
Q 015587 206 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKD------LANDQ 279 (404)
Q Consensus 206 p~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E------~~~~~ 279 (404)
-.+|+|+..+. .-+.....+|++.|+++||++++-.....++...+.++...||+++|+|-.++ -..+.
T Consensus 5 RCDVLV~S~~~-----~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~ 79 (273)
T PF12745_consen 5 RCDVLVCSFGP-----SSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKP 79 (273)
T ss_pred cceEEEEeCCh-----hHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCc
Confidence 46899998874 34558999999999999999999333325899999999999999999998765 23345
Q ss_pred EEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 280 VRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 280 V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
|.||+..++....|+.+||+.++.+.+.+
T Consensus 80 lKVK~l~~~~e~dv~~~eLv~~l~~ei~~ 108 (273)
T PF12745_consen 80 LKVKSLEKKKETDVDRDELVDWLQQEIRE 108 (273)
T ss_pred eEEeccCCCcccccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999877754
No 96
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=97.89 E-value=8.6e-05 Score=80.02 Aligned_cols=115 Identities=13% Similarity=0.070 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEe-cCCCCCCCceeccCCChhHHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK-SGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~-~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
-++++..|.+.+|+.|...||.+|.||+|....- ++-. +.+.... ..+ .-++|+ .|.. +|+
T Consensus 155 ~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~--------eGAr-~~~~p~~~~~~----~~y~L~-qSPQ----lyk 216 (706)
T PRK12820 155 HLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP--------EGAR-DYLVPSRIHPK----EFYALP-QSPQ----LFK 216 (706)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC--------CCCc-ceEEeeecCCC----cceecC-CCHH----HHH
Confidence 4678999999999999999999999999976321 1111 1111111 122 344554 4432 344
Q ss_pred hhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 96 ~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.+... .+ =|+||+++|||.|... .- |.-||+|.|++..+.+.++....+..++
T Consensus 217 q~lm~~-G~-~rvfqI~~~FR~E~~~-t~--r~pEFT~LE~E~af~d~~dvm~l~E~li 270 (706)
T PRK12820 217 QLLMIA-GF-ERYFQLARCFRDEDLR-PN--RQPEFTQLDIEASFIDEEFIFELIEELT 270 (706)
T ss_pred HHHHhc-cC-CcEEEEechhcCCCCC-CC--cCccccccceeeccCCHHHHHHHHHHHH
Confidence 443211 12 3899999999999653 34 8899999999999998887777766665
No 97
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=97.89 E-value=0.0001 Score=78.72 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.||.||+|.+.. +| -+-..|.+.+.. ++.++.||-..+ ++.+
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~-----~g----a~a~pF~t~~n~---~~~~~yL~~SPE-----LylK 294 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTVA-----SG----ANAKSFVTHHNA---NAMDLFLRVAPE-----LHLK 294 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC-----CC----CCccceEeeccc---CCCCEEecCChH-----HHHH
Confidence 467899999999999999999999999995421 11 112234332211 125677775554 2333
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.+... .+ =|+|++|++||+|...++ +.-||+|.|.+.++.+..+....+..++
T Consensus 295 rLivg-G~-erVyeIg~~FRnE~~~~r---H~pEFTmlE~y~a~~d~~d~m~l~E~li 347 (659)
T PTZ00385 295 QCIVG-GM-ERIYEIGKVFRNEDADRS---HNPEFTSCEFYAAYHTYEDLMPMTEDIF 347 (659)
T ss_pred HHhhc-cc-CCEEEEeceecCCCCCCC---ccccccceeeeeecCCHHHHHHHHHHHH
Confidence 22211 12 489999999999965432 7889999999999998887776666655
No 98
>PLN02502 lysyl-tRNA synthetase
Probab=97.82 E-value=0.00012 Score=77.24 Aligned_cols=116 Identities=12% Similarity=0.103 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.+|.||+|.+.. .| -+-.-|...+. .++..+.||=..+-.. +.
T Consensus 228 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~-----gG----A~a~pF~t~~n---~~~~~~yL~~Spel~l----K~ 291 (553)
T PLN02502 228 IFRTRAKIISYIRRFLDDRGFLEVETPMLNMIA-----GG----AAARPFVTHHN---DLNMDLYLRIATELHL----KR 291 (553)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeeccC-----CC----ccccceeeecc---cCCcceeeecCHHHHH----HH
Confidence 457889999999999999999999999996532 12 11112322111 1336788875554222 12
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.+.+ .+ =|+|++|++||+|...+ -+.-||+|.|.+.++++..+....+..++
T Consensus 292 L~v~--g~-~rVfeIg~~FRnE~~~~---rH~pEFtmlE~y~a~~d~~dlm~~~E~li 343 (553)
T PLN02502 292 LVVG--GF-ERVYEIGRQFRNEGIST---RHNPEFTTCEFYQAYADYNDMMELTEEMV 343 (553)
T ss_pred HHHh--cc-CCEEEEcCeeeCCCCCC---ccccceeehhhhhhcCCHHHHHHHHHHHH
Confidence 2222 12 48999999999997644 37889999999999988777776666665
No 99
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=97.82 E-value=0.00017 Score=74.70 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecC----CCCCCCceeccCCChhHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG----ESDLEVPIAIRPTSETVMYP 92 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g----~~~l~~~l~LRPt~e~~i~~ 92 (404)
-++++..|.+.+++.|...||.+|.||+|.... . ++- -+.|.+.... +.-.+.++.|+...+-.. .
T Consensus 132 ~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~-----~---eg~-~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q 201 (450)
T PRK03932 132 VMRIRNTLAQAIHEFFNENGFVWVDTPIITASD-----C---EGA-GELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-E 201 (450)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCceeccC-----C---CCC-CCceEeecccccccccccCCCcccccCHHHHH-H
Confidence 467889999999999999999999999998642 1 121 2356553210 001126677765543221 2
Q ss_pred HHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 93 YFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 93 ~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
++ .+ .+ =|+||++++||.|...+ . --.-||+|.|++.++.+..+....+..++
T Consensus 202 ~l----~~--g~-~rVf~i~~~FR~E~~~t-~-rHl~EFt~lE~e~~~~~~~~~m~~~e~li 254 (450)
T PRK03932 202 AY----AM--AL-GKVYTFGPTFRAENSNT-R-RHLAEFWMIEPEMAFADLEDNMDLAEEML 254 (450)
T ss_pred HH----Hh--cc-CCeEEeeeccccCCCCC-c-cccccccccceEEeccCHHHHHHHHHHHH
Confidence 22 21 22 48999999999995422 2 12469999999999888766655555544
No 100
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=97.81 E-value=0.00013 Score=76.26 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.||.||+|.+.. .| -+-+.|.+.+. .++.++.||-..+- +.+
T Consensus 171 ~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~-----gg----a~a~pF~t~~~---~~~~~~yLriSpEL-----ylK 233 (496)
T TIGR00499 171 TFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP-----GG----ANARPFITHHN---ALDMDLYLRIAPEL-----YLK 233 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC-----CC----ccceeEEeecc---cCCCceEEecCHHH-----HHH
Confidence 457889999999999999999999999997531 12 11122333221 12367778766542 333
Q ss_pred h-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
. +.+ .+ =|+|++|++||+|...++ ..-||+|.|++.++++-.+....+..++
T Consensus 234 rlivg--G~-~rVfeIg~~FRnE~~~~r---H~pEFTmlE~y~a~~d~~dlm~~~E~li 286 (496)
T TIGR00499 234 RLIVG--GF-EKVYEIGRNFRNEGVDTT---HNPEFTMIEFYQAYADYEDLMDLTENLF 286 (496)
T ss_pred HHHhC--CC-CceEEEecceecCCCCCc---ccchhheeehhhhcCCHHHHHHHHHHHH
Confidence 2 222 12 489999999999976443 6789999999998988777766666655
No 101
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=97.80 E-value=0.00019 Score=70.28 Aligned_cols=129 Identities=10% Similarity=0.056 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccCh-hhHhhh---cccccCcccceEEEEecCCCCCCCceeccCCChhHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSP-TVLQKE---KDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYP 92 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~-~l~~k~---~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~ 92 (404)
+..-...+.+.+++.|...||+|+.+|.|++. ..|..- .+|-.--..+.+.+. +.-+||++..+++.+
T Consensus 70 ~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~--------d~~vLRtsl~p~ll~ 141 (294)
T TIGR00468 70 SLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK--------DRLLLRTHTTAVQLR 141 (294)
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec--------CCcceecccHHHHHH
Confidence 44456778888999999999999999999887 344321 111000000234443 457899999888888
Q ss_pred HHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 93 YFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 93 ~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
.++.+.. .|+|+|++|+|||.+.. ... ++.||+|.++-+.+... .-.++..++ ..+++.++
T Consensus 142 ~l~~N~~----~pirlFEiGrVfr~d~~-d~~--~~pef~ql~gl~~~~~~--~f~dLKg~l---e~ll~~l~ 202 (294)
T TIGR00468 142 TMEENEK----PPIRIFSPGRVFRNDTV-DAT--HLPEFHQVEGLVIDKNV--SFTNLKGFL---EEFLKKMF 202 (294)
T ss_pred HHHhcCC----CCceEEEecceEEcCCC-CCc--cCChhhEEEEEEECCCC--CHHHHHHHH---HHHHHHhC
Confidence 7776542 79999999999999842 222 34599999888765221 123334444 46777665
No 102
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=97.79 E-value=0.00013 Score=76.51 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHH
Q 015587 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
.-++++..|.+.+|+.|...||.||.||+|.+. ..|- +-.-|. ++.. .++.++.||=..+ ++.
T Consensus 182 ~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~-----~gGa----~a~pF~-t~~~--~~~~~~yL~~SpE-----Lyl 244 (505)
T PRK12445 182 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVI-----PGGA----SARPFI-THHN--ALDLDMYLRIAPE-----LYL 244 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec-----CCCC----ccccee-cccc--cCCcceeeecCHH-----HHH
Confidence 346789999999999999999999999999652 1221 111121 1110 1236677765443 233
Q ss_pred hh-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 96 KW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 96 ~~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+. +.+ .+ =|+|++|++||+|.. +. -..-||+|.|++.++++..+....+..++
T Consensus 245 Krlivg--G~-~rVfeIg~~FRnE~~-~~--rH~pEFTmlE~y~a~~d~~d~m~l~E~li 298 (505)
T PRK12445 245 KRLVVG--GF-ERVFEINRNFRNEGI-SV--RHNPEFTMMELYMAYADYHDLIELTESLF 298 (505)
T ss_pred HHHHhc--cC-CcEEEEehhccCCCC-CC--CcCcccceeeeeeecCCHHHHHHHHHHHH
Confidence 32 222 12 389999999999965 33 27889999999999988777766666655
No 103
>PLN02850 aspartate-tRNA ligase
Probab=97.74 E-value=0.00018 Score=75.81 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
++++..|.+.+|+.|...||.+|.||+|..... ++- -+.|.+..- | ..++|+...+ ++.+.
T Consensus 225 frirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~--------egg-a~~F~v~yf-~----~~~~L~qSpq-----l~kq~ 285 (530)
T PLN02850 225 FRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS--------EGG-SAVFRLDYK-G----QPACLAQSPQ-----LHKQM 285 (530)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC--------ccc-cceeeeccC-C----cceecCCCHH-----HHHHH
Confidence 567889999999999999999999999955321 121 135655433 2 6778875443 23333
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC-ChhhHHHHHHHHH
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQIL 154 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~e~~~~~ 154 (404)
... .++ =|+|++|+|||.|...+.= -.-||+|.|++.... +..+....+..++
T Consensus 286 li~-~g~-~rVfeIgp~FRaE~s~t~R--Hl~EFt~Le~Em~~~~~y~evm~~~E~ll 339 (530)
T PLN02850 286 AIC-GDF-RRVFEIGPVFRAEDSFTHR--HLCEFTGLDLEMEIKEHYSEVLDVVDELF 339 (530)
T ss_pred HHH-hcC-CceEEEecccccCCCCCCc--cchhhccchhhhhhhcCHHHHHHHHHHHH
Confidence 221 133 3899999999999642321 356999999995443 3444444444433
No 104
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=97.72 E-value=0.00022 Score=73.85 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecC----CCCCCCceeccCCChhHHHHH
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG----ESDLEVPIAIRPTSETVMYPY 93 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g----~~~l~~~l~LRPt~e~~i~~~ 93 (404)
++++..|.+.+++.|...||.+|.||+|....- ++ ..++|.+.... ..-.+.+..|+-..+ +
T Consensus 136 lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~--------eg-~~~~F~v~~~~~~~~~~~~~~~~yL~~Spq-----l 201 (453)
T TIGR00457 136 MRVRNALSQAIHRYFQENGFTWVSPPILTSNDC--------EG-AGELFRVSTDGIDFSQDFFGKEAYLTVSGQ-----L 201 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC--------CC-CCCceEecccccccchhccCCccccccCHH-----H
Confidence 678999999999999999999999999975431 11 12344443100 000125566654432 2
Q ss_pred HHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 94 FSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 94 ~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.+.+.+ .+ =|+||++++||.|...+.= -.-||+|.|++.++++..+....+..++
T Consensus 202 ~lq~l~~--g~-~rVf~i~~~FR~E~~~t~r--Hl~EFt~le~e~~~~~~~dvm~~~E~lv 257 (453)
T TIGR00457 202 YLETYAL--AL-SKVYTFGPTFRAEKSNTSR--HLSEFWMIEPEMAFANLNDLLQLAETLI 257 (453)
T ss_pred HHHHHhh--cc-cCceEeeeccccCCCCCCc--CcchhccceeeeecCCHHHHHHHHHHHH
Confidence 3332222 23 3899999999999653321 2469999999998888776666655554
No 105
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=97.66 E-value=0.00084 Score=62.81 Aligned_cols=121 Identities=11% Similarity=0.092 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChh-hHhhhcccccCccc--------ceEEEEecCCCCCCCceeccCCChhHHH
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPT-VLQKEKDHIEGFAP--------EVAWVTKSGESDLEVPIAIRPTSETVMY 91 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~-l~~k~~g~~~~f~~--------e~~~~~~~g~~~l~~~l~LRPt~e~~i~ 91 (404)
.+.+.+.+++.+...||+|+.|+.|.+.+ .+.+ .+ +.+ +.+.+.. ++ .-+|||+..+.+.
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~-~~----~~~~~~~~~~~~~v~l~N----P~--~~~LR~sLlp~LL 71 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDA-LN----IPQDHPARDMQDTFYIND----PA--RLLLRTHTSAVQA 71 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccchhhhh-cC----CCCCCcccccCceEEECC----Cc--eEEEeccCcHHHH
Confidence 45677889999999999999999998873 3321 11 111 1122211 11 3689999988887
Q ss_pred HHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 92 PYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 92 ~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
...+.+ ..|+++|++|+|||.+.. ... +..||.+.++...|... ...++..+ ...+++.++
T Consensus 72 ~~l~~N-----~~~~~lFEiG~Vf~~~~~-~~~--~~~E~~~l~~~~~g~~~--df~dlkg~---ve~ll~~l~ 132 (218)
T cd00496 72 RALAKL-----KPPIRIFSIGRVYRNDEI-DAT--HLPEFHQIEGLVVDKGL--TFADLKGT---LEEFAKELF 132 (218)
T ss_pred HHHHhc-----CCCeeEEEEcCeEECCCC-CCC--cCCccEEEEEEEECCCC--CHHHHHHH---HHHHHHHhc
Confidence 776665 569999999999998842 323 34599999999878421 12233333 356666665
No 106
>PLN02603 asparaginyl-tRNA synthetase
Probab=97.63 E-value=0.0003 Score=74.38 Aligned_cols=118 Identities=19% Similarity=0.132 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec-------CCCC-------------C-
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-------GESD-------------L- 76 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~-------g~~~-------------l- 76 (404)
++++..|...+++.|...||.+|.||+|...+- +| +.|+|.++.. ++.. .
T Consensus 226 ~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~--------EG-A~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~ 296 (565)
T PLN02603 226 ARVRNALAYATHKFFQENGFVWVSSPIITASDC--------EG-AGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWS 296 (565)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeecccCC--------Cc-cccCceeeeccccccccccccccccccCcccccccc
Confidence 588999999999999999999999999976431 11 2356655431 1000 0
Q ss_pred ----CCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHH
Q 015587 77 ----EVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQ 152 (404)
Q Consensus 77 ----~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~ 152 (404)
+++..|.-.. ..+-.++.. .| =|+|++|++||.|...+.= -+-||+|.|++.++++-++...-+..
T Consensus 297 ~dyF~~~~~LtvS~-QL~~E~~~~------~l-~rVy~igp~FRaE~s~T~R--HL~EF~mlE~E~af~dl~d~m~~~E~ 366 (565)
T PLN02603 297 QDFFGKPAFLTVSG-QLNGETYAT------AL-SDVYTFGPTFRAENSNTSR--HLAEFWMIEPELAFADLNDDMACATA 366 (565)
T ss_pred hhhhCcceeeccCc-hHHHHHHHh------cc-cceEEEecceeCCCCCCcc--ccccceeeeeeeecCCHHHHHHHHHH
Confidence 0111222111 111111111 22 3789999999999764321 35799999999999876665544444
Q ss_pred HH
Q 015587 153 IL 154 (404)
Q Consensus 153 ~~ 154 (404)
++
T Consensus 367 ~l 368 (565)
T PLN02603 367 YL 368 (565)
T ss_pred HH
Confidence 33
No 107
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=97.58 E-value=0.00035 Score=79.39 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
++++..|.+.+|+.|...||.||.||+|.+.+ .| -+-+.|.+... .++.++.||-..+ ++.+.
T Consensus 770 ~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~-----gG----a~a~pF~t~~~---~~~~~~yLriSPE-----LylKr 832 (1094)
T PRK02983 770 LRARSAVVRAVRETLVARGFLEVETPILQQVH-----GG----ANARPFVTHIN---AYDMDLYLRIAPE-----LYLKR 832 (1094)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC-----CC----cccceeEeeec---CCCccchhhcChH-----HHHHH
Confidence 56889999999999999999999999996421 12 11123433221 1236677876554 23332
Q ss_pred -hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 98 -IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 98 -i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.+ .+ =|+|++|++||+|...++ ..-||+|.|.+.++.+..+....+..++
T Consensus 833 Livg--G~-erVFEIg~~FRnE~~~~r---HnpEFTmLE~y~a~~dy~d~m~l~E~li 884 (1094)
T PRK02983 833 LCVG--GV-ERVFELGRNFRNEGVDAT---HNPEFTLLEAYQAHADYDTMRDLTRELI 884 (1094)
T ss_pred HHhc--cc-CceEEEcceecCCCCCCC---ccccccchhhhhhcCCHHHHHHHHHHHH
Confidence 222 22 489999999999976443 6789999999999988877776666665
No 108
>PLN02221 asparaginyl-tRNA synthetase
Probab=97.56 E-value=0.00051 Score=72.70 Aligned_cols=33 Identities=6% Similarity=0.040 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPT 49 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~ 49 (404)
-++++..|...+++.|.+.||.+|.||+|...+
T Consensus 170 i~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 170 VARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 468899999999999999999999999997654
No 109
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00094 Score=67.91 Aligned_cols=113 Identities=14% Similarity=0.120 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++|+..|...+++.|.+.||.+|.||++..... +. +.++|.++--+. +-.|-- |. .+++.
T Consensus 133 v~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~---EG------g~elF~v~yf~~-----~a~Ltq-S~----QLyke 193 (435)
T COG0017 133 VFKIRSSILRAIREFFYENGFTEVHTPIITASAT---EG------GGELFKVDYFDK-----EAYLTQ-SP----QLYKE 193 (435)
T ss_pred HHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC---CC------CceeEEEeecCc-----ceEEec-CH----HHHHH
Confidence 4688999999999999999999999999987653 11 236777765432 222211 11 22222
Q ss_pred hhc-cCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~-s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
-.. +. =|+|.+|++||.|.+.|+= -+-||+|.|.+.++++..+..+-+..++
T Consensus 194 ~~~~al----~rVf~igP~FRAE~s~T~R--HL~EF~~ld~Emaf~~~~d~m~l~E~~i 246 (435)
T COG0017 194 ALAAAL----ERVFTIGPTFRAEKSNTRR--HLSEFWMLDPEMAFADLNDVMDLAEELI 246 (435)
T ss_pred HHHHHh----CceEEecCceecCCCCCcc--hhhhHheecceeccCcHHHHHHHHHHHH
Confidence 221 11 2899999999999876663 4899999999999998665544444443
No 110
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.41 E-value=0.0013 Score=69.78 Aligned_cols=118 Identities=17% Similarity=0.101 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCC---------------------
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESD--------------------- 75 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~--------------------- 75 (404)
-++++..|...+++.|...||.+|.||+|...+- +| +.|||.|+...+.+
T Consensus 214 vlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~--------EG-a~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~ 284 (586)
T PTZ00425 214 VIRIRNALAIATHLFFQSRGFLYIHTPLITTSDC--------EG-GGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKRED 284 (586)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCC--------CC-CcceEEeeecccccccccccccccccccccccccc
Confidence 4688999999999999999999999999965442 11 23667664321000
Q ss_pred -------------------------------------CCCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecC
Q 015587 76 -------------------------------------LEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWE 118 (404)
Q Consensus 76 -------------------------------------l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E 118 (404)
.+.+..|.-.+ .++...+.. .+ =|+|+++++||.|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~-----QLylE~~~~--g~-~rVf~i~p~FRaE 356 (586)
T PTZ00425 285 ILNTCNANNNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSG-----QLSLENLCS--SM-GDVYTFGPTFRAE 356 (586)
T ss_pred ccccccccccccccccccccccccccccccccccccccCcceEEEcCc-----hHHHHHHHh--cc-CCEEEEeceEeCC
Confidence 00111111111 122222211 12 3899999999999
Q ss_pred CCCCCCccc-cceeEEeceeeecCChhhHHHHHHHHH
Q 015587 119 FSNPTPFIR-SREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 119 ~~~~~gllR-~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
...+ . | .-||+|.|++.++.+.++....+..++
T Consensus 357 ~s~t-~--RHL~EFt~lE~E~af~d~~d~m~~~E~li 390 (586)
T PTZ00425 357 NSHT-S--RHLAEFWMIEPEIAFADLYDNMELAESYI 390 (586)
T ss_pred CCCC-C--CCCcccceEEEEEecCCHHHHHHHHHHHH
Confidence 6532 3 4 469999999998887666544444443
No 111
>PLN02532 asparagine-tRNA synthetase
Probab=97.33 E-value=0.0013 Score=70.04 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=35.5
Q ss_pred eEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 106 LKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 106 lk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
=|+|++|++||.|...|.= .+-||+|.|++.++++-.+...-+..++
T Consensus 390 ~rVYeIgP~FRAE~s~T~R--HL~EFtmlE~Emaf~d~~dvM~l~E~lI 436 (633)
T PLN02532 390 GNVYTFGPRFRADRIDSAR--HLAEMWMVEVEMAFSELEDAMNCAEDYF 436 (633)
T ss_pred CceEEEccceecCCCCCCc--ccccccceeeeehhcCHHHHHHHHHHHH
Confidence 4899999999999765432 4889999999998887665544444443
No 112
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=97.18 E-value=0.0023 Score=67.72 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.||.||+|..... -|+.+. |.+..- + ..++|+-..+ ++++
T Consensus 212 i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~----egga~~-----F~v~yf-~----~~~~L~qSpq-----l~kq 272 (550)
T PTZ00401 212 IFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPS----EGGANV-----FKLEYF-N----RFAYLAQSPQ-----LYKQ 272 (550)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC----Cccccc-----cccccC-C----CCeecCCCHH-----HHHH
Confidence 4677889999999999999999999999976441 122222 333222 2 5677754332 2334
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeec-CChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF-ATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~-~~~~~a~~e~~~~~ 154 (404)
.... .++ =|+|++|+|||.|...+.= -.-||+|.|.+..+ .+..+....+..++
T Consensus 273 ~li~-~g~-~rVfeI~p~FRaE~s~T~R--Hl~EFt~Le~E~~~~~~y~evm~~~e~l~ 327 (550)
T PTZ00401 273 MVLQ-GDV-PRVFEVGPVFRSENSNTHR--HLTEFVGLDVEMRINEHYYEVLDLAESLF 327 (550)
T ss_pred HHHh-cCC-CCEEEEeCeEeCCCCCCCC--CccchhhhhhhhHhcCCHHHHHHHHHHHH
Confidence 3322 123 4899999999999764321 34699999998654 44455555554444
No 113
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.14 E-value=0.0073 Score=62.53 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHhcCceEec-cCcccChhhHh-----hhcccccCcccceEEEEec--------------------
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCY-FPLFVSPTVLQ-----KEKDHIEGFAPEVAWVTKS-------------------- 71 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~-~P~l~~~~l~~-----k~~g~~~~f~~e~~~~~~~-------------------- 71 (404)
..-...+.+.+++.|...||+++. .|.+++ +.|. --..|-.--..+.|++.+.
T Consensus 220 ~HPl~~~~~ei~~if~~mGF~e~~~g~~ves-~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~ 298 (492)
T PLN02853 220 LHPLLKVRQQFRKIFLQMGFEEMPTNNFVES-SFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHES 298 (492)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEecCCCCeec-hhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhc
Confidence 345667888999999999999994 566554 3331 1122221111235666521
Q ss_pred CC-----------CCCCCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeec
Q 015587 72 GE-----------SDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 140 (404)
Q Consensus 72 g~-----------~~l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~ 140 (404)
|+ .+..+.++||.-.++.-.+++.+..+. ...|+|++.+|.|||+|.-... .+-||||.|+-+++
T Consensus 299 G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~-~~~p~k~fsigrVfR~d~iDat---H~~eFhQ~EG~vvd 374 (492)
T PLN02853 299 GGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQK-GFKPKRYFSIDRVFRNEAVDRT---HLAEFHQVEGLVCD 374 (492)
T ss_pred CCCCccccccccccchhcccccCCCCCHHHHHHHHHhhcc-CCCCcEEEeccceecCCCCCcc---cCccceeEEEEEEe
Confidence 10 011257889975555556666554322 2469999999999999963222 68899999999986
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 141 ATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 141 ~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
.+-- ...++. +...+|+.+|.
T Consensus 375 ~~~t--~~~L~g---~l~~f~~~lg~ 395 (492)
T PLN02853 375 RGLT--LGDLIG---VLEDFFSRLGM 395 (492)
T ss_pred CCCC--HHHHHH---HHHHHHHHcCC
Confidence 5422 223334 44688888765
No 114
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0068 Score=59.90 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=86.7
Q ss_pred EeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHh-----hhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 12 IMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQ-----KEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 12 ~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~-----k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
...|-+......+.+.+++.|...||+++..|.++. +.|. .-..|-.---.+-|++.+.. +.++||=-.
T Consensus 104 ~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~-d~~NFDaLn~P~dHPARdmqDTFy~~~~~-----~~~lLRTHT 177 (335)
T COG0016 104 RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIET-DFYNFDALNIPQDHPARDMQDTFYLKDDR-----EKLLLRTHT 177 (335)
T ss_pred cCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccc-cccchhhhcCCCCCCcccccceEEEcCCC-----CceeecccC
Confidence 344556677888999999999999999999996553 3332 11222211112356676421 257888644
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
++.-.+.+.+.. .-|+|++..|.|||.|.-... .+-+|+|.|+-+++.+-- -+.+..++ ..+++.++
T Consensus 178 s~vq~R~l~~~~----~~P~k~~~~grvyR~D~~DaT---Hs~~FhQiEGlvvd~~~s--~~~Lkg~L---~~f~~~~f 244 (335)
T COG0016 178 SPVQARTLAENA----KIPIKIFSPGRVYRNDTVDAT---HSPEFHQIEGLVVDKNIS--FADLKGTL---EEFAKKFF 244 (335)
T ss_pred cHhhHHHHHhCC----CCCceEecccceecCCCCCcc---cchheeeeEEEEEeCCcc--HHHHHHHH---HHHHHHhc
Confidence 444455554432 239999999999999954333 578999999977654432 33444444 56666665
No 115
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=96.84 E-value=0.0039 Score=63.84 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=56.4
Q ss_pred CceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHH
Q 015587 78 VPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 157 (404)
Q Consensus 78 ~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y 157 (404)
..+.||+..+++..+.+... ..+..+|+|++.+|.|||.|...-.- ++++|+|.++-+++.+- .-.++..++
T Consensus 181 ~~~lLRTHTTpgqirtL~~L-~~~~~~PiRIFsIGRVfRrD~~~DaT--Hl~eFhQlEGLVVdedV--Sf~DLKgvL--- 252 (533)
T TIGR00470 181 TTLTLRSHMTSGWFITLSSI-IDKRKLPLKLFSIDRCFRREQREDRS--HLMTYHSASCVVVDEEV--SVDDGKAVA--- 252 (533)
T ss_pred hCcccccCChhHHHHHHHHH-hhcCCCCeEEEeeeeEEecCCCCCCc--cCceeeeEEEEEECCCC--CHHHHHHHH---
Confidence 46778887666555555442 22457999999999999999421212 68999999999877643 334555555
Q ss_pred HHHHHHhCCc
Q 015587 158 RRIYEEFLAV 167 (404)
Q Consensus 158 ~~~~~~l~~i 167 (404)
..+++.+|..
T Consensus 253 e~LLr~LG~~ 262 (533)
T TIGR00470 253 EGLLAQFGFT 262 (533)
T ss_pred HHHHHHhCCc
Confidence 4777777643
No 116
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.0059 Score=62.33 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHH-HhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHH
Q 015587 17 AISIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~-~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
-.+++..+...+|+.+ ++.||.+|.||+| |.+.-|. +.|...-+.... -.++--|-|-.. |+
T Consensus 177 nLrlRS~~v~~iR~yl~n~~GFvevETPtL-----FkrTPgG----A~EFvVPtr~~~----g~FYaLpQSPQQ----fK 239 (628)
T KOG2411|consen 177 NLRLRSNVVKKIRRYLNNRHGFVEVETPTL-----FKRTPGG----AREFVVPTRTPR----GKFYALPQSPQQ----FK 239 (628)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeeeccCcch-----hccCCCc----cceeecccCCCC----CceeecCCCHHH----HH
Confidence 4577888888999988 5689999999998 4332221 222221121110 113333555433 34
Q ss_pred hhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 96 ~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.+..-. ==|+||++.|||+|-. +.- |.=||+|.|++..+.+.++...-+..++
T Consensus 240 QlLMvsG--idrYyQiARCfRDEdl-R~D--RQPEFTQvD~EMsF~~~~dim~liEdll 293 (628)
T KOG2411|consen 240 QLLMVSG--IDRYYQIARCFRDEDL-RAD--RQPEFTQVDMEMSFTDQEDIMKLIEDLL 293 (628)
T ss_pred HHHHHhc--hhhHHhHHhhhccccc-Ccc--cCCcceeeeeEEeccCHHHHHHHHHHHH
Confidence 4333211 1378999999999943 335 8899999999999998866544444443
No 117
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=96.11 E-value=0.018 Score=57.44 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC----hhHHH
Q 015587 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS----ETVMY 91 (404)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~----e~~i~ 91 (404)
.-++++..+.......|...+|..|.||++-..+= +|. -|||.|+-.-+ -+..+-=||+. ...+.
T Consensus 130 av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC--------EGa-GE~F~vtt~~d--~~~~fFg~p~fLTVSgQLhl 198 (446)
T KOG0554|consen 130 AVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC--------EGA-GEVFQVTTLTD--YSKDFFGRPAFLTVSGQLHL 198 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC--------CCC-cceEEEEecCc--ccccccCCceEEEEeceehH
Confidence 35789999999999999999999999999976432 233 37888865321 12445555642 23333
Q ss_pred HHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCCh
Q 015587 92 PYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK 143 (404)
Q Consensus 92 ~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~ 143 (404)
..++--+ -+.|-+|+.||.|.+.+.- -+-||+|.|+++++++.
T Consensus 199 E~~a~~L-------srvyTfgP~FRAEnS~tsR--HLAEFwMlEaE~AF~~s 241 (446)
T KOG0554|consen 199 EAMACAL-------SRVYTFGPTFRAENSHTSR--HLAEFWMLEAELAFAES 241 (446)
T ss_pred HHHHhhh-------cceEeeccceecccCCchh--HHhhhhhhhhHHHHHHH
Confidence 3332221 3789999999999764433 57799999999988763
No 118
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.0066 Score=61.58 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-+.++.+|.+++|+.+...||-||+||+|.. .+|. .-++ -| +|+..+ |+-.|.||=..|--+-.++..
T Consensus 224 ~f~~RakII~~iRkfld~rgFlEVETPmmn~------iaGG--A~Ak-PF-IT~hnd--ldm~LylRiAPEL~lK~LvVG 291 (560)
T KOG1885|consen 224 RFRIRAKIISYIRKFLDSRGFLEVETPMMNM------IAGG--ATAK-PF-ITHHND--LDMDLYLRIAPELYLKMLVVG 291 (560)
T ss_pred HHHHHHHHHHHHHHHhhhcCceEecchhhcc------ccCc--cccC-ce-eecccc--cCcceeeeechHHHHHHHHhc
Confidence 3677889999999999999999999999843 1221 1111 12 344333 557788886655333333222
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.+ -|+|.+|..||+|--. +-..=||+-+|.+.+-++-.+...-...++
T Consensus 292 Gl-------drVYEIGr~FRNEGID---lTHNPEFTTcEfY~AYady~dlm~~TE~l~ 339 (560)
T KOG1885|consen 292 GL-------DRVYEIGRQFRNEGID---LTHNPEFTTCEFYMAYADYEDLMDMTEELL 339 (560)
T ss_pred cH-------HHHHHHHHHhhhcCcc---cccCCCcchHHHHHHHhhHHHHHHHHHHHH
Confidence 21 3899999999999432 225668999998887777666554444444
No 119
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=95.59 E-value=0.095 Score=55.86 Aligned_cols=128 Identities=18% Similarity=0.168 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhcCceEeccCcccChhh-HhhhcccccCccc--ceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKEKDHIEGFAP--EVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l-~~k~~g~~~~f~~--e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-.+.+.+.+++.+...||+|+.|..|.+.+. +.+ .+ +.+ +...+..--. ++.-+||++.-+++....+.
T Consensus 360 ~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~-~~----~~~~~~~i~l~NPls---~e~svLRtsLlpgLL~~~~~ 431 (552)
T PRK09616 360 PIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEK-MN----LEPEEDYVEVLNPIS---EDYTVVRTSLLPSLLEFLSN 431 (552)
T ss_pred hHHHHHHHHHHHHHhCCcceeccceEechHHHHHH-hC----CCCCCCeEEEcCCCc---cchheEeccchHHHHHHHHh
Confidence 3566778889999999999999999998865 532 21 222 2344433111 26678999999999998888
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
+. ++..|+++|++|.||+.+..... ..+|+.+..+-+.|.. + .+..+..+...++..+|
T Consensus 432 N~--~~~~~~~lFEiG~Vf~~~~~~~~---~~~e~~~l~~~~~g~~---~--df~dlKg~ve~ll~~lg 490 (552)
T PRK09616 432 NK--HREYPQKIFEIGDVVLIDESTET---GTRTERKLAAAIAHSE---A--SFTEIKSVVQALLRELG 490 (552)
T ss_pred cc--CCCCCeeEEEeeEEEecCCcccc---CcchhhEEEEEEECCC---C--CHHHHHHHHHHHHHHcC
Confidence 77 34679999999999987632111 2357777776666641 1 12233333356666665
No 120
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.021 Score=57.14 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
++|..-|...+|+.+...||.+|-||-|+..+- +. +..+|.+.--++. --++=.| .++++.
T Consensus 228 Friq~gvc~~FRe~L~~kgF~EIhTpKli~asS---EG------GanvF~v~Yfk~~---A~LAQSP-------QLyKQM 288 (533)
T KOG0556|consen 228 FRIQAGVCFAFREYLRSKGFVEIHTPKLIGASS---EG------GANVFRVSYFKQK---AYLAQSP-------QLYKQM 288 (533)
T ss_pred eehHHHHHHHHHHHHHhcCcceecccccccccC---CC------CceeEEEEeccCc---chhhcCh-------HHHHHH
Confidence 345667888999999999999999999976442 11 2457887765541 1122222 123332
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCC
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT 142 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~ 142 (404)
..- .|+ =|+|.+|+|||.|-+.+.- ...||.-.|++.++..
T Consensus 289 aI~-gdf-~rVyeIGpVfRAEdSnthR--hltEFvGLD~EMaf~~ 329 (533)
T KOG0556|consen 289 AIC-GDF-ERVYEIGPVFRAEDSNTHR--HLTEFVGLDLEMAFNE 329 (533)
T ss_pred HHh-cch-hheeeecceeeccccchhh--hhHHhhCcchhhHHHH
Confidence 211 233 4899999999999887765 5788988887775543
No 121
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=95.28 E-value=0.054 Score=55.94 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
+..+-+|.+.+|+.+...||-||.||+|.+- .| |-+-.-| +|+.. .|+-++.||=..|- +.++.
T Consensus 180 f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i------~G---GA~ArPF-~ThhN--ald~dlyLRIApEL----yLKRl 243 (502)
T COG1190 180 FIKRSKIIRAIREFLDDRGFLEVETPMLQPI------PG---GAAARPF-ITHHN--ALDMDLYLRIAPEL----YLKRL 243 (502)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEecccccccc------CC---Ccccccc-eeeec--ccCCceEEeeccHH----HHHHH
Confidence 4567789999999999999999999999652 22 1111122 23322 24577999977663 33444
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
+.. -+ =|+|.+|.+||+|--..+ -.=||++.|.+.+.++..+..+-...++
T Consensus 244 iVG--G~-erVfEIgr~FRNEGid~t---HNPEFTmlE~Y~AYaDy~D~m~ltE~Li 294 (502)
T COG1190 244 IVG--GF-ERVFEIGRNFRNEGIDTT---HNPEFTMLEFYQAYADYEDLMDLTEELI 294 (502)
T ss_pred Hhc--Cc-hhheeeccccccCCCccc---cCcchhhHHHHHHHhHHHHHHHHHHHHH
Confidence 433 22 389999999999943222 3459999999987777666544444433
No 122
>PF09181 ProRS-C_2: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR015264 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found predominantly found in prolyl-tRNA synthetases from archaeal Methanococci species. It contains a zinc binding site, and adopts a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif []. ; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ8_C.
Probab=94.60 E-value=0.074 Score=39.11 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=32.8
Q ss_pred HHHHHHHhcC-CCEEEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 331 WDEFVEALGQ-RKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 331 ~~e~~~~~~~-~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
.|+++++|.+ +|++++|+..+. .-++++++. .|+++|. | ....+.|.-+||+|
T Consensus 15 ~e~iK~~L~ekrgviLiPy~e~i-YnEEfEe~i-----dAsvLG~------------t---~y~G~kYIsiArTY 68 (68)
T PF09181_consen 15 IEKIKEILSEKRGVILIPYDESI-YNEEFEEKI-----DASVLGE------------T---EYEGKKYISIARTY 68 (68)
T ss_dssp --HHHHHCTTT-SEEEEE--GGG--SHHHHHHH-----SS-EEEE------------E---ESSSSEEEEEE-B-
T ss_pred HHHHHHHHHhcCCEEEEeCcHHH-hhHHHHhhh-----CceEeee------------E---EecCcEEEEEEeeC
Confidence 3567888864 799999996554 345678888 9999985 1 23446788899988
No 123
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=93.86 E-value=0.19 Score=46.13 Aligned_cols=88 Identities=11% Similarity=0.078 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCccc-ceEEEEecCCCCCCCceeccCCChhHHHHHHHhhhcc
Q 015587 22 ETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRG 100 (404)
Q Consensus 22 ~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~-e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s 100 (404)
+.+.+.+++.+...||.|+.|..|.+.+.+.. . ++.. +...+..-=. ++.=+|||+.-+.+....+.+...
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~-~----~~~~~~~i~l~NPis---~e~~~lR~sLlp~LL~~~~~N~~~ 74 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAEL-F----DGGLDEAVELSNPLS---EEYSVLRTSLLPGLLDALARNLNR 74 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHh-c----cCCCCCeEEEcCCCc---hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677789999999999999999998865532 1 1111 2334432111 255679999888888888877643
Q ss_pred CCCCCeEEEeeeceeecC
Q 015587 101 HRDLPLKLNQWCNVVRWE 118 (404)
Q Consensus 101 ~~~lPlk~~q~~~vfR~E 118 (404)
...|+++|++|.||..+
T Consensus 75 -~~~~~~lFEiG~vf~~~ 91 (198)
T cd00769 75 -KNKPLRLFEIGRVFLKD 91 (198)
T ss_pred -CCCCEeEEEeEeEEecC
Confidence 45899999999999654
No 124
>PLN02788 phenylalanine-tRNA synthetase
Probab=92.47 E-value=1.5 Score=44.76 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhc---CceEec--cCcccChhhHh---hhcccccCcccceEEEEecCCCCCCCceeccCCChhHHH
Q 015587 20 IWETMQKFFDAEIKKM---KIQNCY--FPLFVSPTVLQ---KEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMY 91 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~---G~~~i~--~P~l~~~~l~~---k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~ 91 (404)
-...+.+.+.+.|... ||+.+. .|+.....-|. --.+|-.--..+-|++. ...+||--.++...
T Consensus 69 Pl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~--------~~~lLRTHTSa~q~ 140 (402)
T PLN02788 69 PLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVD--------AQTVLRCHTSAHQA 140 (402)
T ss_pred hHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEec--------CCccccCCCcHHHH
Confidence 3455677777777776 999998 45443322221 11223211122456663 45888874444455
Q ss_pred HHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeec
Q 015587 92 PYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 140 (404)
Q Consensus 92 ~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~ 140 (404)
+++.+ ..| ++...|.|||.|.-... .+-+|||.|+-.++
T Consensus 141 ~~l~~------~~~-~~~~~g~VyRrD~iD~t---H~p~FhQ~EG~~v~ 179 (402)
T PLN02788 141 ELLRA------GHT-HFLVTGDVYRRDSIDAT---HYPVFHQMEGVRVF 179 (402)
T ss_pred HHHHh------CCC-cEEEEeeEeecCCCCcc---cCccceeEEEEEEe
Confidence 55553 124 89999999999963222 57799999999876
No 125
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=90.97 E-value=0.33 Score=48.24 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCccc---------ceEEEEe--------------------c
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP---------EVAWVTK--------------------S 71 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~---------e~~~~~~--------------------~ 71 (404)
..+|.+.+|.+|-..||.|+-|--++-+++|.= + .-|.| +.|.+.+ .
T Consensus 214 LmKvR~eFRqiF~emGFsEMptn~yVEssFWNF--D--ALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~ 289 (483)
T KOG2784|consen 214 LMKVREEFRQIFFEMGFSEMPTNNYVESSFWNF--D--ALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQ 289 (483)
T ss_pred HHHHHHHHHHHHHHccccccccccchhhccccc--h--hhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHHhc
Confidence 456888899999999999998888877776621 1 11222 2343333 1
Q ss_pred CCC-----------CCCCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeec
Q 015587 72 GES-----------DLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 140 (404)
Q Consensus 72 g~~-----------~l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~ 140 (404)
|+. +..+..+||--+|.+-++|.-+..+. .--|-|+|.|-.|||+|+- -.- .+-||+|.|+-+++
T Consensus 290 G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~-~f~p~K~FSIDrVFRNEtv-DaT--HLAEFHQVEGviad 365 (483)
T KOG2784|consen 290 GGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKK-GFKPAKYFSIDRVFRNETV-DAT--HLAEFHQVEGVIAD 365 (483)
T ss_pred CCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhC-CCCcccccchhhhhhcccc-chH--HHHHHhhhceeeec
Confidence 210 01257788865555555555444332 2459999999999999964 223 67899999999866
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 141 ATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 141 ~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
..-- ...++-+ ...+|..+|+
T Consensus 366 ~glt--LgdLig~---l~~ff~~lg~ 386 (483)
T KOG2784|consen 366 KGLT--LGDLIGI---LMEFFTKLGA 386 (483)
T ss_pred CCCc--HHHHHHH---HHHHHhccCC
Confidence 5432 2333444 4688888775
No 126
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=89.94 E-value=2.5 Score=45.08 Aligned_cols=129 Identities=14% Similarity=0.064 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhhH-hhhcccccCccc-ceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVL-QKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~-~k~~g~~~~f~~-e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
.-.+.+.+.+++.+...||+|+.|-.|.+.+.+ .+ - ++.+ +...+..--. ++.=+||++.-+.+....+.
T Consensus 362 ~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~-~----~~~~~~~v~l~NPis---~e~s~lR~SLlp~LL~~~~~ 433 (551)
T TIGR00471 362 KPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKR-M----RIEDNNDVKVANPKT---LEYTIVRTSLLPGLLETLSE 433 (551)
T ss_pred ChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHH-h----ccCCCCcEEeCCCCc---hhhhHhHhhhHHHHHHHHHh
Confidence 335667778899999999999999999887443 32 1 1222 2233332111 25567999998888888887
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
+. ++..|+++|++|.||..... .. .+.+++...-+-+.|.. ++ +..+......++..++
T Consensus 434 N~--~~~~~~~lFEiG~Vf~~~~~--~~-~~e~~~~~l~~~~~g~~---~d--f~d~Kg~ve~ll~~l~ 492 (551)
T TIGR00471 434 NK--HHELPQKIFEIGDVVVKDDK--SE-TRSRVVTKLAVGITHSE---AN--FNEIKSIVAALARELG 492 (551)
T ss_pred cc--cCCCCeeEEEEEEEEEcCCc--cc-cccceeeEEEEEEECCC---CC--HHHHHHHHHHHHHHcC
Confidence 77 45789999999999954311 11 13444455444444421 11 2233333356666665
No 127
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=89.10 E-value=1.3 Score=46.47 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=31.9
Q ss_pred ceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecC
Q 015587 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWE 118 (404)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E 118 (404)
.-+||++..+++....+.++. ++..|+++|.+|+|||.+
T Consensus 183 ~svLRtSLlPGLL~tLs~Nl~-Rg~~piRLFEIGRVFr~d 221 (529)
T PRK06253 183 RLTLRSHMTSGWFITLSSLLE-KRPLPIKLFSIDRCFRRE 221 (529)
T ss_pred cCccccchHHHHHHHHHHHHh-CCCCCEEEEEEeeEEecC
Confidence 456999988888777777765 357899999999999875
No 128
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.81 E-value=1 Score=45.27 Aligned_cols=244 Identities=16% Similarity=0.178 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
.+++..+.+.+|+.+...||.||-.|.|..+.+ +.| ..+|.+.--|. +-.|--. ..+|-.-
T Consensus 243 LK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQV---EGG------sTLFkldYyGE-----eAyLTQS-----SQLYLEt 303 (545)
T KOG0555|consen 243 LKARAALLRAMRDHYFERGYTEVTPPTMVQTQV---EGG------STLFKLDYYGE-----EAYLTQS-----SQLYLET 303 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCceecCCCceEEEEe---cCc------ceEEeecccCc-----hhhccch-----hHHHHHH
Confidence 466778889999999999999999999988765 233 23455443332 2222111 1222221
Q ss_pred hccCCCCC--eEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH-HHHHHHHHHhCCcceEeeCC
Q 015587 98 IRGHRDLP--LKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL-ELYRRIYEEFLAVPVIKGKK 174 (404)
Q Consensus 98 i~s~~~lP--lk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~-~~y~~~~~~l~~ipv~~g~~ 174 (404)
-|| -.+|.|...||.|++-++- .+.||+..|++..+.+-.+...-+..++ +...+++++ |
T Consensus 304 -----clpAlgdvy~I~~SyRAEkSrTRR--HLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~d----p------ 366 (545)
T KOG0555|consen 304 -----CLPALGDVYCIQQSYRAEKSRTRR--HLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLED----P------ 366 (545)
T ss_pred -----hhhhcCceeEecHhhhhhhhhhhh--hhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhC----h------
Confidence 133 3689999999999876665 5789999999999988877655555443 233333332 2
Q ss_pred CCcCcccHHHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhH
Q 015587 175 SELENSKFVQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGW 254 (404)
Q Consensus 175 ~~~ekf~FRli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~ 254 (404)
++.|+... -|.-.+|- -|.. -+.|. +-..-|++++++-+ +.....+|.
T Consensus 367 ----------~~~li~~l-------nP~f~~P~----~PFk--------Rm~Y~-dAI~wLke~~vk~e--dg~~fefGd 414 (545)
T KOG0555|consen 367 ----------IAPLIKQL-------NPDFKAPK----RPFK--------RMNYS-DAIEWLKEHDVKKE--DGTDFEFGD 414 (545)
T ss_pred ----------hhhhHHHh-------CCCCCCCC----Cchh--------cCCHH-HHHHHHHhcCCcCc--cCccccccc
Confidence 33344432 12211211 0111 11121 22345777776554 222245555
Q ss_pred HHHHH------HHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeec
Q 015587 255 KYSHW------EMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIV 328 (404)
Q Consensus 255 k~~~a------e~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~ 328 (404)
-+.+| +-.|+|+.+.==|-|++. .-+++-.+....+-+.+-|..-|-+++.. -..+
T Consensus 415 DI~eAaER~mtdtIg~PIfLtrFpveiKs--FYM~rc~dd~~lTESvD~LmPnVGEIvGG----------------SMRi 476 (545)
T KOG0555|consen 415 DIPEAAERKMTDTIGVPIFLTRFPVEIKS--FYMKRCEDDPRLTESVDVLMPNVGEIVGG----------------SMRI 476 (545)
T ss_pred chhhHHHHhhhhhcCCceEEeeccccccc--eeeecccCccccceeeeeecCCccccccc----------------eeee
Confidence 55554 457999877644444433 33333222222333334344444444432 2366
Q ss_pred cCHHHHHHHhcCCCEEEee
Q 015587 329 KTWDEFVEALGQRKMILAP 347 (404)
Q Consensus 329 ~~~~e~~~~~~~~~~~~~p 347 (404)
.+.||+.+.++..|+=-.|
T Consensus 477 ~d~eeLlagfkRegId~~p 495 (545)
T KOG0555|consen 477 DDSEELLAGFKREGIDPDP 495 (545)
T ss_pred ccHHHHHHHHhhcCCCCCC
Confidence 8899999988766654333
No 129
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=87.30 E-value=3.6 Score=44.36 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhh-HhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l-~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
.-.+++.+.+|+.+...||+|+.|-+|.+.+. +.+ .+. +.-..+...+..--. .+-=+||++.=+.+....+.+
T Consensus 397 ~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~-~~~~~~~v~I~NP~s---~e~~vlRtSLlPgLL~~l~~N 471 (597)
T PLN02265 397 QPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAM-LNR-EDDGNSAVIIGNPRS---ADFEVVRTSLLPGLLKTLGHN 471 (597)
T ss_pred CHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHh-hcC-CccCCceEEECCCcc---hhHHHHHHhhHHHHHHHHHHh
Confidence 33677888899999999999999999988754 532 111 100012233322111 255578998888877777776
Q ss_pred hccCCCCCeEEEeeeceeecC
Q 015587 98 IRGHRDLPLKLNQWCNVVRWE 118 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E 118 (404)
.. +.+|+|+|++|.||--+
T Consensus 472 ~~--~~~p~klFEiG~V~~~~ 490 (597)
T PLN02265 472 KD--APKPIKLFEVSDVVLLD 490 (597)
T ss_pred hc--CCCCeeEEEeEeEEecC
Confidence 53 35699999999999443
No 130
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=79.65 E-value=0.37 Score=48.11 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhhHhh
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQK 53 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k 53 (404)
-+++.|++ +|+.+-+.||.++--|++++.+-..|
T Consensus 48 pl~~TIq~-lReAYLr~GF~EmvNPlivde~evyk 81 (536)
T COG2024 48 PLYETIQR-LREAYLRMGFSEMVNPLIVDEEEVYK 81 (536)
T ss_pred cHHHHHHH-HHHHHHHhhHHHhcCccccCHHHHHH
Confidence 34555544 78888899999999999998875544
No 131
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=78.87 E-value=14 Score=38.31 Aligned_cols=106 Identities=10% Similarity=0.095 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhc--------CceEecc--CcccChhhHh---hhcccccCcccceEEEEecCCCCCCCceeccCCChhH
Q 015587 23 TMQKFFDAEIKKM--------KIQNCYF--PLFVSPTVLQ---KEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETV 89 (404)
Q Consensus 23 ~i~~~~~~~~~~~--------G~~~i~~--P~l~~~~l~~---k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~ 89 (404)
.+.+.|.+.|... ||+-+.- |+.-...-|. --.+|-.--..+-|++. +..+||.-..+.
T Consensus 46 ~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi~--------~~~lLRTHTSa~ 117 (460)
T TIGR00469 46 IIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYIN--------EQHLLRAHTSAH 117 (460)
T ss_pred HHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEec--------CCceeCCCCcHH
Confidence 4555556666555 8888877 8543333332 12233322223456663 568898744455
Q ss_pred HHHHHHhhhccCCCCCeE--EEeeeceeecCCCCCCCccccceeEEeceeeecC
Q 015587 90 MYPYFSKWIRGHRDLPLK--LNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 141 (404)
Q Consensus 90 i~~~~~~~i~s~~~lPlk--~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~ 141 (404)
..+++.+.... ..|++ +...|.|||.+.-... -+-.|||.|+-.+..
T Consensus 118 q~~~~~~~~~~--~~~~~~~~i~~G~VYRrD~iDat---H~p~FHQ~EG~~v~~ 166 (460)
T TIGR00469 118 ELECFQGGLDD--SDNIKSGFLISADVYRRDEIDKT---HYPVFHQADGAAIRK 166 (460)
T ss_pred HHHHHHhcccc--CCCcceeeEeecceeeCCCCccc---cCccceeeEEEEEec
Confidence 56666654322 25888 8889999999953222 567899999765554
No 132
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=77.92 E-value=3.7 Score=36.72 Aligned_cols=51 Identities=24% Similarity=0.439 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhcCCCEEEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCC
Q 015587 304 ELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPE 383 (404)
Q Consensus 304 ~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~ 383 (404)
...+.+|+.||.++++..++. ++-+.|+| |-+..+ +.|
T Consensus 112 ~~~Ek~H~~~~~~~Le~~~~~-----------------~~~vC~vC------------------Gy~~~g---e~P---- 149 (166)
T COG1592 112 AKAEKRHAEMFRGLLERLEEG-----------------KVWVCPVC------------------GYTHEG---EAP---- 149 (166)
T ss_pred HHHHHHHHHHHHHHHHhhhcC-----------------CEEEcCCC------------------CCcccC---CCC----
Confidence 344557888888887775444 48889999 444444 112
Q ss_pred CCcccccCCCcceE
Q 015587 384 GTLCFASGKPAKKW 397 (404)
Q Consensus 384 ~~~C~~~~~~a~~~ 397 (404)
.+|+.||-|..+.
T Consensus 150 -~~CPiCga~k~~F 162 (166)
T COG1592 150 -EVCPICGAPKEKF 162 (166)
T ss_pred -CcCCCCCChHHHh
Confidence 2699999887644
No 133
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=68.82 E-value=12 Score=40.80 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
...++...+.+++.+...||+|+.|-.|.+.+....-.. ..++...+..--. .+.=+||++.=+.+-..++.+
T Consensus 350 ~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~----~~~~~~~l~NPiS---~e~s~mR~sLlp~LL~~~~~N 422 (650)
T COG0072 350 LTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGL----ENDEALELANPIS---EEYSVLRTSLLPGLLEALSYN 422 (650)
T ss_pred CChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhcc----CCCcceEecCCcc---hhHHHHHHHHHHHHHHHHHHh
Confidence 345667778899999999999999999999887643211 1222222221111 145568887766666666665
Q ss_pred hccCCCCC-eEEEeeeceeecC
Q 015587 98 IRGHRDLP-LKLNQWCNVVRWE 118 (404)
Q Consensus 98 i~s~~~lP-lk~~q~~~vfR~E 118 (404)
. ++..| +++|.+|.||-.+
T Consensus 423 ~--~r~~~~~~iFEiG~v~~~~ 442 (650)
T COG0072 423 K--NRKNPDVRIFEIGDVFVKD 442 (650)
T ss_pred h--ccCCCCeeEEEeeeeEecC
Confidence 4 46789 9999999999876
No 134
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=67.71 E-value=14 Score=40.82 Aligned_cols=84 Identities=6% Similarity=-0.017 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhh
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (404)
...+.+.+.+++.+...||+|+.|-.|.+.+.+ .++...+..--. ++.=+|||+.-+.+....+.+.
T Consensus 398 ~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~----------~~~~i~l~NPiS---~e~s~lR~SLlpgLL~~~~~N~ 464 (704)
T CHL00192 398 DIDYNTRDKIRSYLRNLGLTELIHYSLVKQESF----------SKNEIKLKNPLI---KDYSTLRSSLLPGLIEAVQENL 464 (704)
T ss_pred CHHHHHHHHHHHHHHhCCCceEecccccChhhc----------CCCcEEEeCCCc---hHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777888899999999999999877532 112333332111 2556799998888888887776
Q ss_pred ccCCCCCeEEEeeeceee
Q 015587 99 RGHRDLPLKLNQWCNVVR 116 (404)
Q Consensus 99 ~s~~~lPlk~~q~~~vfR 116 (404)
. +...|+++|++|.||-
T Consensus 465 ~-r~~~~~rlFEiG~Vf~ 481 (704)
T CHL00192 465 K-QGNSTLEGFEIGHVFN 481 (704)
T ss_pred h-cCCCCEeEEEeeeeEc
Confidence 4 3457999999999994
No 135
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=64.52 E-value=21 Score=39.95 Aligned_cols=92 Identities=12% Similarity=0.046 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
.....+.+.+.+++.+...||+|+.|-.|.+.+...+ -+ +.++...+..-=. .+.=+||++.-+.+....+.
T Consensus 485 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~-~~----~~~~~i~l~NPis---~e~~~lR~SLlp~LL~~~~~ 556 (791)
T PRK00629 485 GLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKL-FG----LNPEPLLLLNPIS---EELSVMRTSLLPGLLEAVAY 556 (791)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHh-cC----CCCCeEEEeCCCc---hHHHHHHHhhHHHHHHHHHH
Confidence 3344566677889999999999999999998865532 21 1112233322111 15567999988888887777
Q ss_pred hhccCCCCCeEEEeeeceeec
Q 015587 97 WIRGHRDLPLKLNQWCNVVRW 117 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~ 117 (404)
+.+ +...|+++|++|.||..
T Consensus 557 N~~-~~~~~i~lFEiG~Vf~~ 576 (791)
T PRK00629 557 NLN-RGNKDVALFEIGRVFLP 576 (791)
T ss_pred HHh-CCCCCEeEEeeeeeeCC
Confidence 764 34579999999999954
No 136
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=63.07 E-value=26 Score=33.13 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=46.8
Q ss_pred CCCceEEEEEecCCCC------ChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEEC
Q 015587 204 VASVQVIVIPVPYKDA------DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIG 271 (404)
Q Consensus 204 iap~qV~Iipi~~~~~------~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG 271 (404)
+.|.||.+||-....- +-....+....+.++|+++||+|.+....+ -.++..|...|++. |++-
T Consensus 82 ~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd---~~qi~~A~~~GAd~-VELh 151 (234)
T cd00003 82 VKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD---PEQIEAAKEVGADR-VELH 151 (234)
T ss_pred CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCcCE-EEEe
Confidence 5688999999653211 112235667888999999999998877542 45899999999995 6664
No 137
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=62.62 E-value=27 Score=33.04 Aligned_cols=66 Identities=21% Similarity=0.220 Sum_probs=47.4
Q ss_pred CCCceEEEEEecCCCC------ChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECcc
Q 015587 204 VASVQVIVIPVPYKDA------DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPK 273 (404)
Q Consensus 204 iap~qV~Iipi~~~~~------~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~ 273 (404)
+.|.||.+||-....- +-....+....+.+.|+++||+|.+....+ -.++..|...|++. |++---
T Consensus 82 vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~---~~qi~~A~~~GAd~-VELhTG 153 (237)
T TIGR00559 82 IKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD---KDQISAAAEVGADR-IEIHTG 153 (237)
T ss_pred cCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCcCE-EEEech
Confidence 4688999999653211 112235667888999999999999877542 45899999999995 666433
No 138
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=60.37 E-value=30 Score=32.82 Aligned_cols=69 Identities=25% Similarity=0.289 Sum_probs=48.4
Q ss_pred CCCceEEEEEecCCCC------ChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccC
Q 015587 204 VASVQVIVIPVPYKDA------DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLA 276 (404)
Q Consensus 204 iap~qV~Iipi~~~~~------~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~ 276 (404)
+.|-||.+||-....- +-....+....+.++|+++||||.+.... --.++..|...|++. |++---..+
T Consensus 85 ~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP---~~~qi~~A~~~GAd~-VELhTG~yA 159 (239)
T PRK05265 85 VKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDP---DPEQIEAAAEVGADR-IELHTGPYA 159 (239)
T ss_pred CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHhCcCE-EEEechhhh
Confidence 4688999999653221 11223566778899999999999887744 245899999999995 666543333
No 139
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=58.22 E-value=32 Score=32.62 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=40.7
Q ss_pred CCCceEEEEEecCCCC------ChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEEC
Q 015587 204 VASVQVIVIPVPYKDA------DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIG 271 (404)
Q Consensus 204 iap~qV~Iipi~~~~~------~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG 271 (404)
+.|-||.+||-..... +-....+....+.++|+++||+|.+....+ -.++..|.+.|++. |++-
T Consensus 83 ~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~---~~qi~~A~~~Gad~-VELh 152 (239)
T PF03740_consen 83 VKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPD---PEQIEAAKELGADR-VELH 152 (239)
T ss_dssp H--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S----HHHHHHHHHTT-SE-EEEE
T ss_pred CCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCC---HHHHHHHHHcCCCE-EEEe
Confidence 4578999999642211 112335777889999999999998877542 56899999999995 6653
No 140
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=55.10 E-value=38 Score=37.92 Aligned_cols=84 Identities=7% Similarity=0.020 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhhccCCCCC
Q 015587 26 KFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLP 105 (404)
Q Consensus 26 ~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s~~~lP 105 (404)
+.+++.+...||+|+.|-.|.+.+.+.+ .+. + ..+....+..--. .+.=+||++.-+.+....+.+.+ +...|
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~-~~~-~-~~~~~i~l~NPis---~e~s~lR~SLlpgLL~~~~~N~~-~~~~~ 570 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEK-FNF-P-KLENLVEIKNPLS---NERSVLRTSLLPSLLEVLAYNQN-RKNKD 570 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHh-hcC-C-CCCceEEEeCCCc---hHHHHHHHhhHHHHHHHHHHHHh-CCCCC
Confidence 5678899999999999999998855432 221 1 0111344433211 14557999988888887777764 34578
Q ss_pred eEEEeeeceee
Q 015587 106 LKLNQWCNVVR 116 (404)
Q Consensus 106 lk~~q~~~vfR 116 (404)
+++|++|.||.
T Consensus 571 ~~lFEiG~V~~ 581 (798)
T TIGR00472 571 VKIFEIGKVFA 581 (798)
T ss_pred EeEEeeecccC
Confidence 99999999994
No 141
>PHA02278 thioredoxin-like protein
Probab=50.49 E-value=13 Score=30.27 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=19.0
Q ss_pred cCHHHHHHHhcCCCE----EEeecCCChh
Q 015587 329 KTWDEFVEALGQRKM----ILAPWCDEEE 353 (404)
Q Consensus 329 ~~~~e~~~~~~~~~~----~~~pwc~~~~ 353 (404)
+|++||.+.+++++. .-+||||.-.
T Consensus 2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk 30 (103)
T PHA02278 2 NSLVDLNTAIRQKKDVIVMITQDNCGKCE 30 (103)
T ss_pred CCHHHHHHHHhCCCcEEEEEECCCCHHHH
Confidence 689999999987664 3478998644
No 142
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=45.88 E-value=1.5e+02 Score=23.60 Aligned_cols=78 Identities=9% Similarity=0.088 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCC-ceeeechhhHHHHH
Q 015587 224 IFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNG-AKIDLPRGSLVERV 302 (404)
Q Consensus 224 ~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~-~k~~v~~~el~~~i 302 (404)
-.-.+..|.+.+++.|+.+.+..+....+...+...+...+-++|++|..+.+. .|-.+ .-...++++....-
T Consensus 14 s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~~~~------~rf~gk~v~~~~~~~~l~~~ 87 (96)
T cd05569 14 TYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPVDD------ERFAGKRVYEVSVAEAIKDA 87 (96)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCCCch------hhhCCCeEEEecHHHHHHHH
Confidence 345678888999999999998866533444455445566667999999877554 23333 34556676665544
Q ss_pred HHHHH
Q 015587 303 KELLE 307 (404)
Q Consensus 303 ~~~l~ 307 (404)
...|+
T Consensus 88 ~~vl~ 92 (96)
T cd05569 88 EAVIE 92 (96)
T ss_pred HHHHH
Confidence 44443
No 143
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=42.13 E-value=49 Score=26.81 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=30.7
Q ss_pred ceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCC
Q 015587 207 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRD 248 (404)
Q Consensus 207 ~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~ 248 (404)
.++.|+|++..+ +.+.+|..++.+.|++.|++..+..-+
T Consensus 3 aeisv~P~g~~~---~s~s~yVa~~i~~l~~sGl~y~~~pm~ 41 (97)
T TIGR00106 3 AEVSIIPIGTVG---ASVSSYVAAAIEVLKESGLKYELHPMG 41 (97)
T ss_pred EEEEEeecCCCC---CcHHHHHHHHHHHHHHcCCCeEecCCc
Confidence 367899997332 467889999999999999998887643
No 144
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=40.26 E-value=2.2e+02 Score=23.74 Aligned_cols=82 Identities=7% Similarity=0.060 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCC-ceeeechhhHHHHHH
Q 015587 225 FDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNG-AKIDLPRGSLVERVK 303 (404)
Q Consensus 225 ~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~-~k~~v~~~el~~~i~ 303 (404)
.-.+..|.+.-++.|+.+.++.++...+..++..-+....-++|++|..++.+.. |-.| .-..+++++....-.
T Consensus 19 ~lAAeaL~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~~~~~~~-----rF~gk~v~~~s~~~ai~d~~ 93 (114)
T PRK10427 19 YMAAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDIELAGAE-----RFEHCRYVQCSIYAFLREPQ 93 (114)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCCCCchh-----hhCCCeEEEecHHHHHHHHH
Confidence 3456777777788899999988764445555555556666799999987742211 2223 346678888776666
Q ss_pred HHHHHHHH
Q 015587 304 ELLEEVQE 311 (404)
Q Consensus 304 ~~l~~~~~ 311 (404)
..|+...+
T Consensus 94 ~vl~~a~~ 101 (114)
T PRK10427 94 RVMSAVRK 101 (114)
T ss_pred HHHHHHHH
Confidence 66665443
No 145
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=39.75 E-value=55 Score=26.77 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=30.8
Q ss_pred ceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCC
Q 015587 207 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR 247 (404)
Q Consensus 207 ~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~ 247 (404)
..+.|+|++..+ ..+.+|..++.+.|++.|++..+..-
T Consensus 5 v~~sviP~gt~~---~svs~yVa~~i~~lk~~glky~~~pm 42 (100)
T COG0011 5 VELSVIPLGTGG---PSVSKYVAEAIEILKESGLKYQLGPM 42 (100)
T ss_pred EEEEEEecCCCC---CCHHHHHHHHHHHHHHcCCceeecCc
Confidence 467899998543 45889999999999999998887654
No 146
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=39.48 E-value=97 Score=29.13 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=43.8
Q ss_pred CCCceEEEEEecCCCC------ChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEE
Q 015587 204 VASVQVIVIPVPYKDA------DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEI 270 (404)
Q Consensus 204 iap~qV~Iipi~~~~~------~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiI 270 (404)
..|-||.+||-..... +--........+.++|++.|++|.+.... --.++..|...|+|+ |++
T Consensus 83 ~kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD~---d~~qi~aa~~~gA~~-IEL 151 (243)
T COG0854 83 TKPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFIDP---DPEQIEAAAEVGAPR-IEL 151 (243)
T ss_pred cCCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeCC---CHHHHHHHHHhCCCE-EEE
Confidence 4578999999542211 11122456678889999999999887644 245788999999996 454
No 147
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=38.59 E-value=1.9e+02 Score=22.69 Aligned_cols=79 Identities=9% Similarity=0.108 Sum_probs=48.7
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCC-ceeeechhhHHHHHHHHH
Q 015587 228 CTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNG-AKIDLPRGSLVERVKELL 306 (404)
Q Consensus 228 a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~-~k~~v~~~el~~~i~~~l 306 (404)
+..|.+.-++.|+.+.+..++...+-.++..-+....-++|++|...+.+. .|-.| .-..+++++.+..-...+
T Consensus 3 AeaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~~i~~~-----~rf~gk~v~~~s~~~ai~~~~~vl 77 (88)
T PRK10474 3 AEALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDIGIKFE-----ERFAGKTIVRVNISDAVKRADAIM 77 (88)
T ss_pred HHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCCCcch-----hccCCCceEEecHHHHHHCHHHHH
Confidence 445666667789999988876444445555555666679999998775321 12223 445677777665555555
Q ss_pred HHHHH
Q 015587 307 EEVQE 311 (404)
Q Consensus 307 ~~~~~ 311 (404)
+..++
T Consensus 78 ~~a~~ 82 (88)
T PRK10474 78 SKIEA 82 (88)
T ss_pred HHHHH
Confidence 54443
No 148
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=38.19 E-value=93 Score=24.86 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=30.2
Q ss_pred eEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCC
Q 015587 208 QVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR 247 (404)
Q Consensus 208 qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~ 247 (404)
.+.|+|++..+ +.+.++..++.+.|++.|++..+..-
T Consensus 2 ei~v~P~g~~~---~s~~~~V~~~i~~i~~sgl~y~v~pm 38 (92)
T PF01910_consen 2 EISVIPIGTGG---ESVSAYVAEAIEVIKESGLKYEVGPM 38 (92)
T ss_dssp EEEEEEESSSS---SHHHHHHHHHHHHHHTSSSEEEEETT
T ss_pred EEEEEeCCCCC---CCHHHHHHHHHHHHHHcCCceEEcCC
Confidence 46789997532 57889999999999999999988764
No 149
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=34.87 E-value=2.7e+02 Score=26.44 Aligned_cols=42 Identities=14% Similarity=-0.057 Sum_probs=34.9
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEEC
Q 015587 228 CTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIG 271 (404)
Q Consensus 228 a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG 271 (404)
|..+..+|+++|++|.+..+ ++...+..+++..|+|=+..|.
T Consensus 28 A~pv~~el~d~G~~Vi~~SS--KT~aE~~~l~~~l~v~~~p~ia 69 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSS--KTRAEMLYLQKSLGVQGLPLIA 69 (274)
T ss_pred cchHHHHHHHcCCeEEEecc--chHHHHHHHHHhcCCCCCceee
Confidence 55788899999999998875 5899999999999999444443
No 150
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=34.52 E-value=3.5e+02 Score=27.23 Aligned_cols=109 Identities=19% Similarity=0.198 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHH
Q 015587 226 DACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKEL 305 (404)
Q Consensus 226 ~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~ 305 (404)
+....+++.|++.||...+--..+-|..-...-++.-|+|++=+-| -+.| --.+...++-.+..++.+.+.
T Consensus 81 e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPk--TIDN-------Di~~td~tiGfdTA~~~~~ea 151 (347)
T COG0205 81 EGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPK--TIDN-------DISGTDFTIGFDTALETAVEA 151 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCC--CccC-------CCcccccCccHHHHHHHHHHH
Confidence 3445888999999999988765444666666677777788766655 3333 223667888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHcCeeec----cCHHHHHHHhcCC-CEEEee
Q 015587 306 LEEVQESLFVAAKQRRDACIQIV----KTWDEFVEALGQR-KMILAP 347 (404)
Q Consensus 306 l~~~~~~l~~~a~~~~~~~~~~~----~~~~e~~~~~~~~-~~~~~p 347 (404)
++.++ ..|.++-.-+++.+ .+|=-+...+..+ .++++|
T Consensus 152 id~l~----dtassh~r~~iveVMGR~aG~lAl~aglA~~a~~ilip 194 (347)
T COG0205 152 IDNLR----DTASSHERIFIVEVMGRHAGWLALAAGLATGADIILIP 194 (347)
T ss_pred HHHHH----HHHhCcCCEEEEEecCcChhHHHHHHHHhcCCCEEEec
Confidence 88766 55666666666666 4455566666543 477776
No 151
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=33.83 E-value=74 Score=25.34 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=11.9
Q ss_pred eechhhHHHHHHHHHHHHH
Q 015587 292 DLPRGSLVERVKELLEEVQ 310 (404)
Q Consensus 292 ~v~~~el~~~i~~~l~~~~ 310 (404)
.++++++.+++...+....
T Consensus 23 ~~~l~~l~~fl~~~l~~~~ 41 (109)
T PF10367_consen 23 DWPLSDLSDFLCKSLRKYS 41 (109)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4567777777766665433
No 152
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=32.71 E-value=29 Score=31.82 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCCEEEeecCC-ChhHHHHHH
Q 015587 331 WDEFVEALGQRKMILAPWCD-EEEVEKDVK 359 (404)
Q Consensus 331 ~~e~~~~~~~~~~~~~pwc~-~~~~e~~ik 359 (404)
.++|++....+.++++|+|- +.+||.++-
T Consensus 79 ~k~fkk~~~~Kr~llLPhClR~~~CeA~~t 108 (209)
T COG1852 79 EKDFKKIPVGKRLLLLPHCLRNPKCEAKLT 108 (209)
T ss_pred HHHHhhCCcccEEEEchhhhcCCCCccccc
Confidence 34576666556799999996 467986553
No 153
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=32.39 E-value=50 Score=27.09 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=21.6
Q ss_pred CeeeccCHHHHHHHhcCCCE----EEeecCCC
Q 015587 324 CIQIVKTWDEFVEALGQRKM----ILAPWCDE 351 (404)
Q Consensus 324 ~~~~~~~~~e~~~~~~~~~~----~~~pwc~~ 351 (404)
.+..+++.++|.+++.+++. .-+|||+.
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~ 36 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFR 36 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCcc
Confidence 56788999999999976553 34589984
No 154
>PLN03194 putative disease resistance protein; Provisional
Probab=32.14 E-value=57 Score=29.81 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=36.4
Q ss_pred CCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhH----HHHHHHHcCCCEEEEE
Q 015587 205 ASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGW----KYSHWEMKGVPLRIEI 270 (404)
Q Consensus 205 ap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~----k~~~ae~~GvP~~iiI 270 (404)
.+++|+|---+. +.-...+..|+..|+.+||+|.+|+.. ...|. .+..| .....+.|+|
T Consensus 25 ~~yDVFISFrG~-----DtR~~FvshL~~aL~~~GI~vF~D~~e-l~~G~~i~~~L~~A-IeeSri~IvV 87 (187)
T PLN03194 25 KPCDVFINHRGI-----DTKRTIATLLYDHLSRLNLRPFLDNKN-MKPGDKLFDKINSA-IRNCKVGVAV 87 (187)
T ss_pred CCCcEEEeCCCc-----cccccHHHHHHHHHHHCCCEEEEcCcc-ccCCCcHHHHHHHH-HHhCeEEEEE
Confidence 457887744332 122356789999999999999999853 23444 44444 2344444443
No 155
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=32.09 E-value=1.6e+02 Score=25.70 Aligned_cols=54 Identities=17% Similarity=0.024 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHhhCCCEEEEeCCC--CCChhHHHHHHHHcCCCEEEEECcccc
Q 015587 222 QGIFDACTATVEKLCEAGIRANSDFRD--NYSPGWKYSHWEMKGVPLRIEIGPKDL 275 (404)
Q Consensus 222 ~~~~~~a~~i~~~Lr~~Girv~~D~~~--~~s~g~k~~~ae~~GvP~~iiIG~~E~ 275 (404)
+-....+..+.+.|++.|++|.+.-.. ..++..+...++..+.-+.|.|--+-.
T Consensus 24 ~~~l~ia~~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~ 79 (175)
T PF01520_consen 24 DINLDIALRLKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNAS 79 (175)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-S
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCc
Confidence 346678999999999999999886543 237999999999999999999876543
No 156
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=30.83 E-value=2.3e+02 Score=24.67 Aligned_cols=54 Identities=17% Similarity=0.040 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHhhCCCEEEEeCCCC--CChhHHHHHHHHcCCCEEEEECcccc
Q 015587 222 QGIFDACTATVEKLCEAGIRANSDFRDN--YSPGWKYSHWEMKGVPLRIEIGPKDL 275 (404)
Q Consensus 222 ~~~~~~a~~i~~~Lr~~Girv~~D~~~~--~s~g~k~~~ae~~GvP~~iiIG~~E~ 275 (404)
+.....+..+...|++.|++|.+.-.+. .++..+...++..+.-+.|.+--.--
T Consensus 25 ~~~~~ia~~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na~ 80 (172)
T cd02696 25 DINLAIALKLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANAA 80 (172)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecCC
Confidence 4466889999999999999998754432 37899999999999999999865543
No 157
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=29.89 E-value=49 Score=26.37 Aligned_cols=26 Identities=19% Similarity=0.560 Sum_probs=19.5
Q ss_pred eccCHHHHHHHhcCCCE----EEeecCCCh
Q 015587 327 IVKTWDEFVEALGQRKM----ILAPWCDEE 352 (404)
Q Consensus 327 ~~~~~~e~~~~~~~~~~----~~~pwc~~~ 352 (404)
.+.|.+++...+++++. .-+|||+.-
T Consensus 3 ~i~~~~~~~~~i~~~~~vvv~F~a~wC~~C 32 (102)
T cd02948 3 EINNQEEWEELLSNKGLTVVDVYQEWCGPC 32 (102)
T ss_pred EccCHHHHHHHHccCCeEEEEEECCcCHhH
Confidence 46788999998887763 457899753
No 158
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=29.41 E-value=1.1e+02 Score=25.21 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=27.5
Q ss_pred ceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEE-eCC
Q 015587 207 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS-DFR 247 (404)
Q Consensus 207 ~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~-D~~ 247 (404)
.++.|+..+. ....|.+.++.|++.|+++.+ |.+
T Consensus 10 ~di~iia~G~-------~~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 10 ADITIIAYGS-------MVEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSEEEEEETT-------HHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCEEEEeehH-------HHHHHHHHHHHHHHcCCceeEEeeE
Confidence 4788988873 578899999999999999875 444
No 159
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=28.84 E-value=1.3e+02 Score=31.64 Aligned_cols=112 Identities=21% Similarity=0.304 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHH--HHcCCCEEEEECccccCCCeEEEEECCCCceeeechh--
Q 015587 221 TQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHW--EMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRG-- 296 (404)
Q Consensus 221 ~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~a--e~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~-- 296 (404)
.+....+-.++++.++. .++..+-+.. ..+.-+..- +..+.|+++++... .+.+.....+
T Consensus 270 ~e~~~~~~~~vAk~f~~-~l~Fi~~d~e--~~~~~~~~~Gl~~~~~~~~~v~~~~-------------~~~Ky~~~~e~~ 333 (493)
T KOG0190|consen 270 FEELRKKFEEVAKKFKG-KLRFILIDPE--SFARVLEFFGLEEEQLPIRAVILNE-------------DGSKYPLEEEEL 333 (493)
T ss_pred HHHHHHHHHHHHHhccc-ceEEEEEChH--HhhHHHHhcCcccccCCeeEEeecc-------------ccccccCccccc
Confidence 46788888999999987 5766655432 233333322 22445544444322 2223222222
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHH---H---cCeeeccCHHHHHHHhcCCCE----EEeecCCC
Q 015587 297 ---SLVERVKELLEEVQESLFVAAKQRR---D---ACIQIVKTWDEFVEALGQRKM----ILAPWCDE 351 (404)
Q Consensus 297 ---el~~~i~~~l~~~~~~l~~~a~~~~---~---~~~~~~~~~~e~~~~~~~~~~----~~~pwc~~ 351 (404)
.+...+++.++. +..-+-++...- + -.++..+++|++. +++++= .-+||||.
T Consensus 334 ~~~~ie~f~~~~l~G-k~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv--~de~KdVLvEfyAPWCgH 398 (493)
T KOG0190|consen 334 DQENIESFVKDFLDG-KVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIV--LDEGKDVLVEFYAPWCGH 398 (493)
T ss_pred cHHHHHHHHHHHhcC-ccccccccCCCCcccccCCeEEEeecCHHHHh--hccccceEEEEcCcccch
Confidence 244555555543 222222222221 1 2344458898886 555542 45899995
No 160
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=28.27 E-value=5.5e+02 Score=24.82 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=48.0
Q ss_pred EEEEEecCCCC--ChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCC-hhHHHHHHHHcCCCEEEEECccccCCCeEEEEEC
Q 015587 209 VIVIPVPYKDA--DTQGIFDACTATVEKLCEAGIRANSDFRDNYS-PGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRR 285 (404)
Q Consensus 209 V~Iipi~~~~~--~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s-~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r 285 (404)
|-|||+-.|.. ..++-.+.-..|.+.|...||.+.=.+..+.. -.+-++..-+.-||+.++=.++|..-|-=.+.-|
T Consensus 185 vNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR~~iPFAVVGsd~e~~vnG~~vlGR 264 (336)
T KOG1547|consen 185 VNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVRESIPFAVVGSDKEIQVNGRRVLGR 264 (336)
T ss_pred heeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHHhhCCeEEecccceEEEcCeEeecc
Confidence 33555533321 23455566788999999999988643321112 2333455555679998766667766666666666
Q ss_pred CCC
Q 015587 286 DNG 288 (404)
Q Consensus 286 ~~~ 288 (404)
.|.
T Consensus 265 ktr 267 (336)
T KOG1547|consen 265 KTR 267 (336)
T ss_pred ccc
Confidence 654
No 161
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=27.55 E-value=5.5e+02 Score=25.17 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 227 ACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 227 ~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
...++++.|++.||...+-...+-|+.--..-++..++|++.+ |+-+.|+- .+...++-.+..++.+.+.+
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigi--PkTIDNDl-------~~td~s~GfdTA~~~~~~~i 149 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGL--PGTIDNDI-------PGTDYTIGFDTALNTIIDAV 149 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEee--cccccCCC-------cCcccCcChhHHHHHHHHHH
Confidence 4568889999999999987765446644444445468886443 56666643 24566777777777777776
Q ss_pred HHHH
Q 015587 307 EEVQ 310 (404)
Q Consensus 307 ~~~~ 310 (404)
+.++
T Consensus 150 ~~i~ 153 (301)
T TIGR02482 150 DKIR 153 (301)
T ss_pred HHHH
Confidence 6653
No 162
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=26.63 E-value=2.7e+02 Score=25.03 Aligned_cols=53 Identities=13% Similarity=-0.012 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHhhCCCEEEEeCCCC----------------CChhHHHHHHHHcCCCEEEEECccc
Q 015587 222 QGIFDACTATVEKLCEAGIRANSDFRDN----------------YSPGWKYSHWEMKGVPLRIEIGPKD 274 (404)
Q Consensus 222 ~~~~~~a~~i~~~Lr~~Girv~~D~~~~----------------~s~g~k~~~ae~~GvP~~iiIG~~E 274 (404)
+-....+..+++.|++.|+.|.+--.++ .++..+...|+..+.-+.|-|--+-
T Consensus 26 ~~~l~ia~~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na 94 (189)
T TIGR02883 26 DITLEIALKLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNA 94 (189)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCC
Confidence 4467889999999999999998633221 1467889999999999999887654
No 163
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=26.53 E-value=2.4e+02 Score=21.59 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=29.0
Q ss_pred CCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEE-eCCC
Q 015587 200 LPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS-DFRD 248 (404)
Q Consensus 200 lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~-D~~~ 248 (404)
|+|.-.|--++++.-+. .+-...-..+++.|.+.|+.|.. |.+.
T Consensus 9 w~p~~~~k~~v~i~HG~-----~eh~~ry~~~a~~L~~~G~~V~~~D~rG 53 (79)
T PF12146_consen 9 WKPENPPKAVVVIVHGF-----GEHSGRYAHLAEFLAEQGYAVFAYDHRG 53 (79)
T ss_pred ecCCCCCCEEEEEeCCc-----HHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 55544445555555443 34566778899999999999975 4453
No 164
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=26.35 E-value=1.2e+02 Score=25.83 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=38.6
Q ss_pred eEEEEEecCCCCChhhHHHHHHHHHHHHhhC-CCEEEEeCCCCC---ChhH-HHHHHHHcCCCEEEEECc
Q 015587 208 QVIVIPVPYKDADTQGIFDACTATVEKLCEA-GIRANSDFRDNY---SPGW-KYSHWEMKGVPLRIEIGP 272 (404)
Q Consensus 208 qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~-Girv~~D~~~~~---s~g~-k~~~ae~~GvP~~iiIG~ 272 (404)
.|.|+.-.+ .++..+.+..+++.|++. |+.|.+|.=+.. ..|+ +.-......+-++|+|=.
T Consensus 2 kVfI~Ys~d----~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 2 KVFISYSHD----SEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred eEEEEeCCC----CHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 366666543 256778899999999999 999999963211 1122 122223456667777665
No 165
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=25.91 E-value=1e+02 Score=27.58 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhcC-C--CEE----EeecCCCh
Q 015587 303 KELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQ-R--KMI----LAPWCDEE 352 (404)
Q Consensus 303 ~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~-~--~~~----~~pwc~~~ 352 (404)
.+.+.++++.+ ++...-..+..+++.++|.+.+.+ + +.| -+|||+.-
T Consensus 45 ~~R~~el~~~~---~~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~C 98 (175)
T cd02987 45 EQRMQEMHAKL---PFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGC 98 (175)
T ss_pred HHHHHHHHHhc---cccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchH
Confidence 34455554442 233345677888898999999864 2 233 45899753
No 166
>PF14116 YyzF: YyzF-like protein
Probab=25.42 E-value=39 Score=23.79 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=11.6
Q ss_pred CcccccCCCcceEE
Q 015587 385 TLCFASGKPAKKWT 398 (404)
Q Consensus 385 ~~C~~~~~~a~~~~ 398 (404)
++|-+|+++|+..+
T Consensus 34 ~~C~~C~~~A~Y~V 47 (48)
T PF14116_consen 34 TTCEYCDQPAVYLV 47 (48)
T ss_pred CcchhhCCCceEEe
Confidence 47999999998654
No 167
>PRK14072 6-phosphofructokinase; Provisional
Probab=25.00 E-value=4.6e+02 Score=27.02 Aligned_cols=86 Identities=21% Similarity=0.083 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCh--hHHHHH-HHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHH
Q 015587 227 ACTATVEKLCEAGIRANSDFRDNYSP--GWKYSH-WEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303 (404)
Q Consensus 227 ~a~~i~~~Lr~~Girv~~D~~~~~s~--g~k~~~-ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~ 303 (404)
...++.+.|++.||...+-...+-|+ ..++.+ +...|.++.++-=|+-+.|+- .+...++-.+..++.+.
T Consensus 91 ~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl-------~gtD~t~GF~TA~~~i~ 163 (416)
T PRK14072 91 EYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDL-------PGTDHCPGFGSAAKYIA 163 (416)
T ss_pred HHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCC-------CCCCCCCChHHHHHHHH
Confidence 44688899999999998876544454 334443 334685555555566666642 25567777888888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 015587 304 ELLEEVQESLFVAAKQ 319 (404)
Q Consensus 304 ~~l~~~~~~l~~~a~~ 319 (404)
+.++.+..+...-|..
T Consensus 164 ~ai~~l~~D~~~ta~s 179 (416)
T PRK14072 164 TSVLEAALDVAAMANT 179 (416)
T ss_pred HHHHHHHHHHHhcccC
Confidence 8887776665444433
No 168
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=24.61 E-value=3.3e+02 Score=22.38 Aligned_cols=67 Identities=9% Similarity=0.060 Sum_probs=39.5
Q ss_pred HHHHHH-HhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECc--c-----------ccC-CCeEEEEECCCCceeee
Q 015587 229 TATVEK-LCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGP--K-----------DLA-NDQVRAVRRDNGAKIDL 293 (404)
Q Consensus 229 ~~i~~~-Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~--~-----------E~~-~~~V~v~~r~~~~k~~v 293 (404)
..+.+. ++..|+++..-.. ...+......|.|+++.++. . -.. ++.+.+.+..+++...+
T Consensus 47 ~~l~~~~a~~~G~~~~~~~~-----~~~~~~~l~~~~Pvi~~~~~~~~~~~~gH~vVv~g~~~~~~~~i~DP~~~~~~~~ 121 (141)
T cd02549 47 KPIVSAAARKYGLVVRPLTG-----LLALLRQLAAGHPVIVSVNLGVSITPSGHAMVVIGYDRKGNVYVNDPGGGRRLVV 121 (141)
T ss_pred HHHHHHHHhhCCCcEEECCC-----HHHHHHHHHCCCeEEEEEecCcccCCCCeEEEEEEEcCCCCEEEECCCCCcCEEE
Confidence 345555 7777987765322 11266777889998887641 0 122 55566666655555566
Q ss_pred chhhHHH
Q 015587 294 PRGSLVE 300 (404)
Q Consensus 294 ~~~el~~ 300 (404)
+.++|.+
T Consensus 122 ~~~~f~~ 128 (141)
T cd02549 122 SFDEFEK 128 (141)
T ss_pred eHHHHHH
Confidence 6666543
No 169
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=24.44 E-value=2.1e+02 Score=26.04 Aligned_cols=105 Identities=11% Similarity=0.123 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEE-EEECccccCCCeEEEEECCCCceeeechhhHHHHHHH
Q 015587 226 DACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLR-IEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 304 (404)
Q Consensus 226 ~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~-iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~ 304 (404)
.....+++.+...|..+.+|--. ..++. +......++-+. +.+.+.+.-...+..|.++.+ ...+.+..++.+.+
T Consensus 84 ~~L~~va~~~l~~G~sVIvEgv~-l~p~~-~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~--~~~p~~~~~~~~~~ 159 (197)
T PRK12339 84 PGINRVIRRALLNGEDLVIESLY-FHPPM-IDENRTNNIRAFYLYIRDAELHRSRLADRINYTH--KNSPGKRLAEHLPE 159 (197)
T ss_pred HHHHHHHHHHHHcCCCEEEEecC-cCHHH-HHHHHhcCeEEEEEEeCCHHHHHHHHHHHhhccc--CCCcHHHHHHHHHH
Confidence 33556777777889999999743 34443 333334454322 224444433344444444433 22345556666766
Q ss_pred HHHHHHHHHHHHHHHHHHcCeeec--cCHHHHHHHh
Q 015587 305 LLEEVQESLFVAAKQRRDACIQIV--KTWDEFVEAL 338 (404)
Q Consensus 305 ~l~~~~~~l~~~a~~~~~~~~~~~--~~~~e~~~~~ 338 (404)
+. .||+-|.++|+++ .|-.+ .++|+-.+.+
T Consensus 160 ir-~i~~~l~~~a~~~---~i~~i~~~~~~~~~~~~ 191 (197)
T PRK12339 160 YR-TIMDYSIADARGY---NIKVIDTDNYREARNPL 191 (197)
T ss_pred HH-HHHHHHHHHHHHc---CCCeecCccHHHHHHHH
Confidence 55 5999999999887 44433 5566655443
No 170
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=23.81 E-value=4.1e+02 Score=25.55 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=24.5
Q ss_pred HHHHHHhhC--CCEEEEeCCCCCChh-HHHHHHHHcCCCEEEEECcccc
Q 015587 230 ATVEKLCEA--GIRANSDFRDNYSPG-WKYSHWEMKGVPLRIEIGPKDL 275 (404)
Q Consensus 230 ~i~~~Lr~~--Girv~~D~~~~~s~g-~k~~~ae~~GvP~~iiIG~~E~ 275 (404)
.+...+++. ++-+.-.|-+..+.. +=-..++..||||+++-+..++
T Consensus 139 ~VtkaIekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVktKaeL 187 (263)
T PTZ00222 139 EVTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDMARL 187 (263)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHH
Confidence 455556653 333333332212232 2345678899999877665553
No 171
>COG3439 Uncharacterized conserved protein [Function unknown]
Probab=23.71 E-value=4e+02 Score=23.02 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeC
Q 015587 223 GIFDACTATVEKLCEAGIRANSDF 246 (404)
Q Consensus 223 ~~~~~a~~i~~~Lr~~Girv~~D~ 246 (404)
...+....|.+.|+++|+.|....
T Consensus 20 ~~~E~i~~l~~~lk~~G~~V~~~i 43 (137)
T COG3439 20 SFDETIERLEEKLKKNGFKVFTEI 43 (137)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEe
Confidence 366777899999999998886554
No 172
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=23.69 E-value=7.9e+02 Score=25.01 Aligned_cols=112 Identities=16% Similarity=0.090 Sum_probs=64.2
Q ss_pred EEEEEecCCCC--ChhhHHHHHHHHHHHHhhCCCEEEE--eCCCCCChh-HHHHHHHHcCCCEEEEECccccCCCeEEEE
Q 015587 209 VIVIPVPYKDA--DTQGIFDACTATVEKLCEAGIRANS--DFRDNYSPG-WKYSHWEMKGVPLRIEIGPKDLANDQVRAV 283 (404)
Q Consensus 209 V~Iipi~~~~~--~~~~~~~~a~~i~~~Lr~~Girv~~--D~~~~~s~g-~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~ 283 (404)
|=|||+-.|.. ..+++...=..|.+.|...+|+|.. |..+ .+.. ---+..-..-+||.||=+..+.+++.=+++
T Consensus 163 vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~pyd~e~-~~~e~~e~~~~l~~~~PFAII~S~~~~~~~~~~vr 241 (373)
T COG5019 163 VNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFDPYDPED-DEDESLEENQDLRSLIPFAIIGSNTEIENGGEQVR 241 (373)
T ss_pred cCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeCCCCccc-cchhhHHHHHHHhhcCCeEEEeccceeccCCceee
Confidence 55677654432 3466777788899999999999985 3322 1211 112222234599998888888887764444
Q ss_pred ECCCCceeeechh-----hH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 015587 284 RRDNGAKIDLPRG-----SL--------VERVKELLEEVQESLFVAAKQRRD 322 (404)
Q Consensus 284 ~r~~~~k~~v~~~-----el--------~~~i~~~l~~~~~~l~~~a~~~~~ 322 (404)
-|.- .-..|.++ |+ ...+.+|.+.=+..+|++=+...-
T Consensus 242 gR~Y-pWG~v~Idd~~hsDF~~Lr~~Li~thL~~L~~~T~~~~YE~YR~e~L 292 (373)
T COG5019 242 GRKY-PWGVVEIDDEEHSDFKKLRNLLIRTHLQELKETTENLLYENYRTEKL 292 (373)
T ss_pred eecc-CCcceecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4431 11222222 22 244556666666668887655433
No 173
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=22.28 E-value=3e+02 Score=26.82 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHhhCCCEEEEeCCC--CCChhHHHHHHHHcCCCEEEEECcccc
Q 015587 222 QGIFDACTATVEKLCEAGIRANSDFRD--NYSPGWKYSHWEMKGVPLRIEIGPKDL 275 (404)
Q Consensus 222 ~~~~~~a~~i~~~Lr~~Girv~~D~~~--~~s~g~k~~~ae~~GvP~~iiIG~~E~ 275 (404)
+-.++.|.++.+.|++.|++|.+--.+ ..++..+...|+..+.-+.|-|--+-.
T Consensus 82 di~L~IA~~l~~~L~~~G~~V~lTR~~D~~vsL~~R~~~An~~~ADlFISIH~Ns~ 137 (287)
T PRK10319 82 HVVLAIAKNVRSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGF 137 (287)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 335678899999999999999884322 247999999999999999998875543
No 174
>PF04052 TolB_N: TolB amino-terminal domain; InterPro: IPR007195 TolB is a periplasmic protein from Escherichia coli that is part of the Tol-dependent translocation system involving group A and E colicins that is used to penetrate and kill cells [, ]. TolB has two domains, an alpha-helical N-terminal domain that shares structural similarity with the C-terminal domain of transfer RNA ligases, and a beta-propeller C-terminal domain (IPR011042 from INTERPRO) that shares structural similarity with numerous members of the prolyl oligopeptidase family and, to a lesser extent, to class B metallo-beta-lactamases []. The function of the N-terminal domain is uncertain.; GO: 0015031 protein transport, 0042597 periplasmic space; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A.
Probab=21.83 E-value=2e+02 Score=22.92 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=38.6
Q ss_pred CCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCC-----ChhHHHHHHHHcCCCEEEEECccccCCC
Q 015587 204 VASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNY-----SPGWKYSHWEMKGVPLRIEIGPKDLAND 278 (404)
Q Consensus 204 iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~-----s~g~k~~~ae~~GvP~~iiIG~~E~~~~ 278 (404)
..+..++|.|....+...+-....+.-|.+.|...|.=--++...-. .-.-.+..|..+|+.+. +.|.=....+
T Consensus 10 ~~~~pIaV~~f~~~~~~~~~~~~i~~vi~~DL~~SG~F~~i~~~~~~~~~~~~~~~~~~~w~~~gad~l-v~G~v~~~g~ 88 (105)
T PF04052_consen 10 DQKIPIAVPPFQGDGGDAELGEDIAEVISNDLKRSGLFRVIDPSSFPQDPSSPSQVNFSDWRSLGADYL-VTGSVTQSGN 88 (105)
T ss_dssp GGSEEEEE---EESSSS-S-SS-HHHHHHHHHHHTTSEEE--GGG-S---SSGGG--HHHHHTTT-SEE-EEEEEEE-TT
T ss_pred CccCCEEEecCCCCCcccchhHHHHHHHHHHHHhCCCceEcCchhcccCCCccCCcCHHHHHHcCCCEE-EEEEEEECCC
Confidence 35567888887543211011234566788889999975455553211 23447899999999985 4554334443
Q ss_pred eEEE
Q 015587 279 QVRA 282 (404)
Q Consensus 279 ~V~v 282 (404)
.+++
T Consensus 89 ~~~v 92 (105)
T PF04052_consen 89 GLRV 92 (105)
T ss_dssp SEEE
T ss_pred EEEE
Confidence 3333
No 175
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=21.47 E-value=3.6e+02 Score=25.75 Aligned_cols=62 Identities=19% Similarity=-0.017 Sum_probs=39.7
Q ss_pred HHHhhCCCEEEEeCCCCC--ChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHH
Q 015587 233 EKLCEAGIRANSDFRDNY--SPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKEL 305 (404)
Q Consensus 233 ~~Lr~~Girv~~D~~~~~--s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~ 305 (404)
..+++.|+.+.+--.++. ..-.|+.-|...|+|+++|=-|.. ..+ ....-+++++++.+.++
T Consensus 191 al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~-~~~----------~~~~~~~~el~~~l~~~ 254 (256)
T TIGR00715 191 ALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQT-IPG----------VAIFDDISQLNQFVARL 254 (256)
T ss_pred HHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC-CCC----------CccCCCHHHHHHHHHHh
Confidence 446777999988654322 367899999999999876655543 221 11123566676666554
No 176
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=21.22 E-value=1.1e+02 Score=27.00 Aligned_cols=85 Identities=14% Similarity=0.046 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCC--CCCh-hhHHHHHHHHHHHHhhCCCEEEEeCCCCCC-----hhHH
Q 015587 184 QIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYK--DADT-QGIFDACTATVEKLCEAGIRANSDFRDNYS-----PGWK 255 (404)
Q Consensus 184 li~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~--~~~~-~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s-----~g~k 255 (404)
.+..+++.+. -++++ .++++++-++-... +.+. ......+..|.+.+......|.+|.++ +. +..+
T Consensus 15 ~~~~~~~eY~----kRl~~-~~~~e~~e~~~~~~~~~~~~~~~~~~E~~~il~~i~~~~~~i~Ld~~G-k~~sS~~fA~~ 88 (155)
T PF02590_consen 15 FLKELIEEYL----KRLSR-YAKLEIIELKEEKIAKAQSIEKIKEKEGERILKKIPPNDYVILLDERG-KQLSSEEFAKK 88 (155)
T ss_dssp HHHHHHHHHH----HHHCT-TSEEEEEEE------TCHHHHHHHHHHHHHHHCTSHTTSEEEEE-TTS-EE--HHHHHHH
T ss_pred HHHHHHHHHH----HHcCc-cCceeEEEeccccccccccHHHHHHHHHHHHHhhccCCCEEEEEcCCC-ccCChHHHHHH
Confidence 4455555441 13444 34566666664321 1011 123345666766666677888889765 33 5668
Q ss_pred HHHHHHcCC-CEEEEECccc
Q 015587 256 YSHWEMKGV-PLRIEIGPKD 274 (404)
Q Consensus 256 ~~~ae~~Gv-P~~iiIG~~E 274 (404)
+..|...|. .+.++||.-+
T Consensus 89 l~~~~~~g~~~i~F~IGG~~ 108 (155)
T PF02590_consen 89 LERWMNQGKSDIVFIIGGAD 108 (155)
T ss_dssp HHHHHHTTS-EEEEEE-BTT
T ss_pred HHHHHhcCCceEEEEEecCC
Confidence 999999998 8999999654
No 177
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=21.16 E-value=76 Score=24.92 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=17.2
Q ss_pred eeeccCHHHHHHHhcCCCEEE----eecCCC
Q 015587 325 IQIVKTWDEFVEALGQRKMIL----APWCDE 351 (404)
Q Consensus 325 ~~~~~~~~e~~~~~~~~~~~~----~pwc~~ 351 (404)
++.+ |.++|.+.+++++.++ +|||+.
T Consensus 3 ~~~l-~~~~f~~~v~~~~~~~v~f~a~wC~~ 32 (101)
T cd03003 3 IVTL-DRGDFDAAVNSGEIWFVNFYSPRCSH 32 (101)
T ss_pred eEEc-CHhhHHHHhcCCCeEEEEEECCCChH
Confidence 3444 4667777787666444 799985
No 178
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=21.12 E-value=1.4e+02 Score=30.49 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=32.9
Q ss_pred eEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEEC
Q 015587 208 QVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIG 271 (404)
Q Consensus 208 qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG 271 (404)
+++|++.+. + ..+.++++.||+.|++|+++..+. .. ++ ..+..-.+.+|
T Consensus 334 ~~~~~~~~~-----~---~~~~~~a~~LR~~G~~~~~~~~~~--~~----~~-~~~~~~~~~~~ 382 (392)
T PRK12421 334 GAILAPWGD-----D---PDLLAAIAELRQQGERVVQLLPGD--DG----SS-EPGCDHRLVLQ 382 (392)
T ss_pred ceEEeecCC-----c---HHHHHHHHHHHhCCCEEEEeCCCc--ch----hH-HhCCCeEEEEE
Confidence 577777652 1 246789999999999999987542 11 12 34666666666
No 179
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=21.08 E-value=1.8e+02 Score=26.12 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCChhH-HHHHHHHcCCCEEEEEC
Q 015587 223 GIFDACTATVEKLCEAGIRANSDFRDNYSPGW-KYSHWEMKGVPLRIEIG 271 (404)
Q Consensus 223 ~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~-k~~~ae~~GvP~~iiIG 271 (404)
+-.+-|..||..|++.|+-|++-+.. .... ++.+.+ +++||
T Consensus 13 qT~kIA~~iA~~L~e~g~qvdi~dl~--~~~~~~l~~yd------avVIg 54 (175)
T COG4635 13 QTRKIAEYIASHLRESGIQVDIQDLH--AVEEPALEDYD------AVVIG 54 (175)
T ss_pred cHHHHHHHHHHHhhhcCCeeeeeehh--hhhccChhhCc------eEEEe
Confidence 45677899999999999999887643 2332 344443 67777
No 180
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=21.00 E-value=4.7e+02 Score=21.57 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=46.5
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCChhHHHHHHH-HcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 229 TATVEKLCEAGIRANSDFRDNYSPGWKYSHWE-MKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 229 ~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae-~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
.++.+-|.+.=+-+-.|.+. +-|.++...- -.+.|+.+++.+++ +..++..|-.| .++.+++...+....+
T Consensus 43 ~~v~~~ln~~fv~w~~dv~~--~eg~~la~~l~~~~~P~~~~l~~~~---~~~~vv~~i~G---~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 43 PEVIEYINTRMLFWACSVAK--PEGYRVSQALRERTYPFLAMIMLKD---NRMTIVGRLEG---LIQPEDLINRLTFIMD 114 (116)
T ss_pred HHHHHHHHcCEEEEEEecCC--hHHHHHHHHhCCCCCCEEEEEEecC---CceEEEEEEeC---CCCHHHHHHHHHHHHh
Confidence 35666676543445566653 4677766543 36899999998774 45666666655 5578888877776654
No 181
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=20.95 E-value=4.5e+02 Score=21.51 Aligned_cols=66 Identities=14% Similarity=-0.029 Sum_probs=39.8
Q ss_pred ceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChh--HHHHHHHHcCCCEEEEECccccCC
Q 015587 207 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPG--WKYSHWEMKGVPLRIEIGPKDLAN 277 (404)
Q Consensus 207 ~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g--~k~~~ae~~GvP~~iiIG~~E~~~ 277 (404)
++|.|.--.. .....+.+..|.+.|...|+.+..|+.. ...+ ..+..+-..---+++++.++-+++
T Consensus 2 ~dvFISys~~----~~~~~~~v~~L~~~l~~~~~~v~~d~~~-~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S 69 (140)
T smart00255 2 YDVFISYSGK----EDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDLEEIDEAIEKSRIAIVVLSPNYAES 69 (140)
T ss_pred CeEEEECCCC----HHHHHHHHHHHHHHhhcCCcEEEecCcc-cccchHHHHHHHHHHCcEEEEEECcccccC
Confidence 5666655331 1345677889999999899999988743 1222 245555444334555666655444
No 182
>KOG3102 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.95 E-value=3.2e+02 Score=25.54 Aligned_cols=76 Identities=12% Similarity=0.217 Sum_probs=52.4
Q ss_pred CCCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHH
Q 015587 76 LEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILE 155 (404)
Q Consensus 76 l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~ 155 (404)
|.+.++||--.--.+.++.+..++|...+-+-+++|- +|-++. |+|-|.-.++.+.|.. ++-.+++
T Consensus 126 Lsr~VvLr~HqI~~fi~~L~~~l~s~~rf~~t~n~~~-iytN~e-------~TRtFi~leitt~~~~------~~~~~i~ 191 (269)
T KOG3102|consen 126 LSRNVVLRVHQINSFISMLRQKLQSQKRFLITFNKWE-IYTNDE-------HTRTFISLEITTSGLS------EISKQID 191 (269)
T ss_pred eccceEEEeehhhHHHHHHHHHHhhhhhheEeecceE-EEeccc-------cceeEEEEEechhhHH------HHHHHHH
Confidence 4588999987766778888888888776667777764 554552 6778998888886543 3334555
Q ss_pred HHHHHHHHhC
Q 015587 156 LYRRIYEEFL 165 (404)
Q Consensus 156 ~y~~~~~~l~ 165 (404)
...++++...
T Consensus 192 ~vd~Vm~~~n 201 (269)
T KOG3102|consen 192 AVDEVMKLHN 201 (269)
T ss_pred HHHHHHHHcC
Confidence 5567776553
No 183
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=20.94 E-value=78 Score=26.60 Aligned_cols=25 Identities=28% Similarity=0.745 Sum_probs=17.7
Q ss_pred eccCHHHHHHHhcC--CCE----EEe-------ecCCC
Q 015587 327 IVKTWDEFVEALGQ--RKM----ILA-------PWCDE 351 (404)
Q Consensus 327 ~~~~~~e~~~~~~~--~~~----~~~-------pwc~~ 351 (404)
.+.++++|.+.+.+ |+. ..+ +||+.
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~p 42 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPD 42 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHh
Confidence 45788888888864 553 345 89985
No 184
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=20.50 E-value=1.4e+02 Score=20.74 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=22.3
Q ss_pred CCceeeechhhHHHHHHHHHHHHHHHHHHH
Q 015587 287 NGAKIDLPRGSLVERVKELLEEVQESLFVA 316 (404)
Q Consensus 287 ~~~k~~v~~~el~~~i~~~l~~~~~~l~~~ 316 (404)
.+++..+.+.+|.+.++.+- .|.++||+=
T Consensus 12 ~~e~l~vrv~eLEeEV~~Lr-KINrdLfdF 40 (48)
T PF14077_consen 12 DQEQLRVRVSELEEEVRTLR-KINRDLFDF 40 (48)
T ss_pred CcchheeeHHHHHHHHHHHH-HHhHHHHhh
Confidence 35677888899999887655 489999864
No 185
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=20.15 E-value=5.8e+02 Score=23.82 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=54.3
Q ss_pred HHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEE--ECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 230 ATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIE--IGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 230 ~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~ii--IG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
++.+.|.++.+-+.-... -+.|-.+-+|-..|.|++.. -|-.|+-.+ ..|--..-..+++.+.+..+++
T Consensus 274 ~~~~~~~~adv~v~ps~~--e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~l~~ 344 (375)
T cd03821 274 DKAAALADADLFVLPSHS--ENFGIVVAEALACGTPVVTTDKVPWQELIEY-------GCGWVVDDDVDALAAALRRALE 344 (375)
T ss_pred HHHHHHhhCCEEEecccc--CCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-------CceEEeCCChHHHHHHHHHHHh
Confidence 456666666543332222 36788899999999998653 122332221 1111111122678888888877
Q ss_pred H--HHHHHHHHHHHHHHcCeeeccCHHHHHHHh
Q 015587 308 E--VQESLFVAAKQRRDACIQIVKTWDEFVEAL 338 (404)
Q Consensus 308 ~--~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~ 338 (404)
+ ..++|-++|++...++ -||+.+.+.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~----~s~~~~~~~~ 373 (375)
T cd03821 345 LPQRLKAMGENGRALVEER----FSWTAIAQQL 373 (375)
T ss_pred CHHHHHHHHHHHHHHHHHh----cCHHHHHHHh
Confidence 5 3456666666664333 5777766554
Done!