Query 015587
Match_columns 404
No_of_seqs 276 out of 1832
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 15:12:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hvc_A Bifunctional glutamate/ 100.0 2E-100 6E-105 791.4 42.3 404 1-404 44-519 (519)
2 3ial_A Prolyl-tRNA synthetase; 100.0 1.2E-99 4E-104 783.3 38.0 397 1-404 37-518 (518)
3 1hc7_A Prolyl-tRNA synthetase; 100.0 8.2E-96 3E-100 753.8 42.0 391 1-404 27-477 (477)
4 1nj1_A PROR, proline-tRNA synt 100.0 1.6E-91 5.5E-96 725.8 40.4 389 1-404 53-501 (501)
5 1nj8_A Proline-tRNA synthetase 100.0 1.1E-87 3.7E-92 690.9 38.5 378 1-404 20-459 (459)
6 3uh0_A Threonyl-tRNA synthetas 100.0 7.3E-59 2.5E-63 476.4 26.3 288 6-308 52-458 (460)
7 2i4l_A Proline-tRNA ligase; al 100.0 1.7E-55 5.8E-60 452.5 27.2 288 5-302 54-457 (458)
8 1qf6_A THRRS, threonyl-tRNA sy 100.0 6E-55 2.1E-59 464.4 29.1 285 6-308 259-634 (642)
9 1evl_A Threonyl-tRNA synthetas 100.0 2.4E-54 8.1E-59 437.1 27.7 285 5-307 17-392 (401)
10 3a32_A Probable threonyl-tRNA 100.0 5.2E-54 1.8E-58 442.8 30.2 301 6-318 37-458 (471)
11 2j3l_A Prolyl-tRNA synthetase; 100.0 4.3E-54 1.5E-58 453.6 30.0 290 6-307 35-565 (572)
12 1nyr_A Threonyl-tRNA synthetas 100.0 7E-52 2.4E-56 442.0 26.4 286 7-307 260-640 (645)
13 1ati_A Glycyl-tRNA synthetase; 100.0 7.1E-51 2.4E-55 421.9 26.8 295 4-306 25-503 (505)
14 2zt5_A Glycyl-tRNA synthetase; 100.0 3.5E-50 1.2E-54 428.9 27.4 311 4-339 87-670 (693)
15 1htt_A Histidyl-tRNA synthetas 100.0 5.3E-48 1.8E-52 392.9 29.5 282 1-306 1-422 (423)
16 1h4v_B Histidyl-tRNA synthetas 100.0 4.8E-47 1.6E-51 385.7 30.6 280 3-306 2-420 (421)
17 4e51_A Histidine--tRNA ligase; 100.0 1.2E-46 4.1E-51 387.2 29.6 280 2-306 30-458 (467)
18 1qe0_A Histidyl-tRNA synthetas 100.0 1E-46 3.5E-51 383.0 25.9 277 4-303 2-419 (420)
19 1g5h_A Mitochondrial DNA polym 100.0 2.7E-48 9.3E-53 397.0 14.2 297 6-311 49-442 (454)
20 3ikl_A DNA polymerase subunit 100.0 3.8E-46 1.3E-50 377.6 25.9 278 5-308 90-449 (459)
21 1wu7_A Histidyl-tRNA synthetas 100.0 9.8E-46 3.3E-50 377.6 28.1 276 3-307 5-426 (434)
22 4g85_A Histidine-tRNA ligase, 100.0 4.3E-44 1.5E-48 373.0 23.2 278 4-307 67-514 (517)
23 4g84_A Histidine--tRNA ligase, 100.0 1.1E-43 3.8E-48 365.0 23.4 278 4-307 14-461 (464)
24 3net_A Histidyl-tRNA synthetas 100.0 2E-42 6.8E-47 355.9 23.1 280 2-306 10-464 (465)
25 3lc0_A Histidyl-tRNA synthetas 100.0 1.5E-41 5.2E-46 347.9 24.8 272 1-298 26-446 (456)
26 2dq3_A Seryl-tRNA synthetase; 100.0 2.1E-35 7.3E-40 299.4 13.3 197 7-213 161-423 (425)
27 3vbb_A Seryl-tRNA synthetase, 100.0 5.8E-35 2E-39 299.4 15.3 209 7-217 190-473 (522)
28 1wle_A Seryl-tRNA synthetase; 100.0 9.2E-35 3.1E-39 298.5 16.2 200 7-212 208-473 (501)
29 2dq0_A Seryl-tRNA synthetase; 100.0 4.1E-35 1.4E-39 299.1 13.5 193 6-208 181-438 (455)
30 1ses_A Seryl-tRNA synthetase; 100.0 5.7E-35 2E-39 295.7 13.1 193 7-208 155-412 (421)
31 3qne_A Seryl-tRNA synthetase, 100.0 8.4E-34 2.9E-38 288.8 13.4 202 7-216 174-446 (485)
32 3lss_A Seryl-tRNA synthetase; 100.0 2E-32 6.7E-37 279.0 16.7 202 6-216 196-471 (484)
33 3err_A Fusion protein of micro 100.0 1.5E-32 5.2E-37 284.6 15.9 192 7-207 264-520 (536)
34 2cja_A Seryl-tRNA synthetase; 100.0 1.5E-31 5E-36 275.7 12.4 165 2-169 215-408 (522)
35 3od1_A ATP phosphoribosyltrans 100.0 5.5E-30 1.9E-34 258.2 21.7 149 4-166 10-158 (400)
36 1z7m_A ATP phosphoribosyltrans 100.0 1.1E-28 3.8E-33 244.1 16.6 151 3-166 21-172 (344)
37 3rac_A Histidine-tRNA ligase; 99.9 4.6E-27 1.6E-31 234.8 15.0 157 4-174 23-189 (373)
38 3mf2_A BLL0957 protein; aminoa 99.9 5.7E-22 1.9E-26 192.8 14.6 158 5-170 51-229 (346)
39 1usy_A ATP phosphoribosyltrans 99.8 2.6E-19 9E-24 171.7 8.8 124 22-174 4-132 (275)
40 1v95_A Nuclear receptor coacti 99.7 2.2E-17 7.5E-22 139.4 10.8 102 204-312 6-111 (130)
41 3dsq_A Pyrrolysyl-tRNA synthet 99.7 2.1E-16 7.2E-21 152.3 12.0 134 19-166 71-204 (288)
42 3qtc_A Pyrrolysyl-tRNA synthet 99.4 3.1E-12 1.1E-16 123.4 14.7 130 21-169 79-210 (290)
43 1nnh_A Asparaginyl-tRNA synthe 99.2 8.2E-11 2.8E-15 113.6 12.8 111 14-143 11-126 (294)
44 1x54_A Asparaginyl-tRNA synthe 98.9 7.3E-09 2.5E-13 105.0 13.8 112 16-152 133-245 (434)
45 1wyd_A Hypothetical aspartyl-t 98.9 9.3E-09 3.2E-13 104.0 14.0 113 17-154 133-246 (429)
46 1n9w_A Aspartyl-tRNA synthetas 98.8 1.5E-08 5.1E-13 102.4 11.0 113 17-154 124-238 (422)
47 1eov_A ASPRS, aspartyl-tRNA sy 98.8 3.8E-08 1.3E-12 101.1 14.1 113 17-154 177-292 (487)
48 3a74_A Lysyl-tRNA synthetase; 98.8 7.7E-08 2.6E-12 98.9 14.3 121 17-164 173-295 (493)
49 3a5y_A GENX, putative lysyl-tR 98.6 3.7E-07 1.3E-11 89.7 13.1 120 17-154 35-155 (345)
50 1e1o_A Lysyl-tRNA synthetase, 98.6 6.1E-07 2.1E-11 92.4 14.4 122 17-164 182-304 (504)
51 3nem_A Aspartyl-tRNA synthetas 98.3 3.3E-06 1.1E-10 85.5 12.9 114 17-154 136-251 (438)
52 2xgt_A Asparaginyl-tRNA synthe 98.3 5.7E-06 1.9E-10 83.8 13.8 113 17-154 131-244 (435)
53 3bju_A Lysyl-tRNA synthetase; 98.2 1.2E-05 4.2E-10 83.0 13.9 122 17-164 175-297 (521)
54 4ex5_A Lysine--tRNA ligase; st 98.2 2.3E-05 7.8E-10 80.9 14.5 122 17-164 203-325 (529)
55 1c0a_A Aspartyl tRNA synthetas 98.1 2.1E-05 7.3E-10 82.4 14.0 120 17-164 137-259 (585)
56 1l0w_A Aspartyl-tRNA synthetas 98.1 2.5E-05 8.7E-10 81.7 14.0 123 17-165 143-266 (580)
57 3l4g_A Phenylalanyl-tRNA synth 98.0 1.8E-05 6E-10 81.1 10.9 141 18-166 224-400 (508)
58 4ah6_A Aspartate--tRNA ligase, 98.0 5.6E-05 1.9E-09 79.3 13.6 113 18-154 148-262 (617)
59 3m4p_A Ehasnrs, asparaginyl-tR 98.0 5.1E-05 1.8E-09 77.1 13.0 113 17-154 155-268 (456)
60 3i7f_A Aspartyl-tRNA synthetas 97.9 8.5E-05 2.9E-09 76.9 12.7 114 18-154 244-358 (548)
61 1b7y_A Phers, protein (phenyla 97.7 0.0005 1.7E-08 67.5 14.0 113 20-141 102-226 (350)
62 2du3_A O-phosphoseryl-tRNA syn 97.6 0.00024 8.4E-09 73.0 11.5 79 79-166 180-259 (534)
63 2rhq_A Phenylalanyl-tRNA synth 97.6 0.00047 1.6E-08 66.1 12.1 107 20-141 54-165 (294)
64 2du7_A O-phosphoseryl-tRNA syn 97.4 0.0012 4E-08 68.0 12.4 138 20-165 58-270 (549)
65 2odr_B Phosphoseryl-tRNA synth 96.9 0.0061 2.1E-07 63.5 12.4 80 78-166 198-278 (648)
66 2odr_A Phosphoseryl-tRNA synth 96.9 0.0062 2.1E-07 63.5 12.4 80 78-166 198-278 (665)
67 2odr_D Phosphoseryl-tRNA synth 96.9 0.0065 2.2E-07 63.5 12.4 80 78-166 198-278 (685)
68 2odr_C Phosphoseryl-tRNA synth 96.8 0.0061 2.1E-07 63.8 11.5 79 79-166 199-278 (701)
69 3l4g_B Phenylalanyl-tRNA synth 96.7 0.018 6.1E-07 60.3 13.6 129 21-165 393-523 (589)
70 3pco_A Phenylalanyl-tRNA synth 96.6 0.0021 7.2E-08 62.4 5.8 106 19-141 107-216 (327)
71 3ig2_A Phenylalanyl-tRNA synth 95.3 0.13 4.5E-06 46.4 11.1 137 21-165 6-152 (213)
72 3ica_A Phenylalanyl-tRNA synth 94.9 0.36 1.2E-05 43.5 12.7 113 21-141 6-122 (213)
73 2rhq_B Phenylalanyl-tRNA synth 94.7 0.3 1E-05 52.9 13.5 109 20-141 494-603 (795)
74 1b7y_B Phers, protein (phenyla 94.0 0.39 1.3E-05 51.8 12.6 103 20-142 490-593 (785)
75 3cmq_A Phenylalanyl-tRNA synth 94.0 0.51 1.7E-05 47.1 12.5 101 21-139 50-163 (415)
76 3pco_B Phenylalanyl-tRNA synth 74.0 23 0.00077 38.2 12.0 86 24-119 494-580 (795)
77 1m5w_A Pyridoxal phosphate bio 65.4 16 0.00055 33.4 7.2 64 204-271 86-155 (243)
78 3zzx_A Thioredoxin; oxidoreduc 63.6 2.7 9.2E-05 32.9 1.6 27 325-351 2-34 (105)
79 3gk0_A PNP synthase, pyridoxin 57.8 16 0.00054 34.0 5.8 64 204-271 114-183 (278)
80 3o6c_A PNP synthase, pyridoxin 49.3 14 0.00047 34.1 3.9 63 204-270 85-151 (260)
81 3d6i_A Monothiol glutaredoxin- 43.8 15 0.00052 27.8 3.0 28 324-351 1-35 (112)
82 2j23_A Thioredoxin; immune pro 39.4 19 0.00064 28.1 2.9 28 324-351 16-47 (121)
83 2ibo_A Hypothetical protein SP 36.7 63 0.0022 25.4 5.5 38 207-248 5-42 (104)
84 3m9j_A Thioredoxin; oxidoreduc 32.8 21 0.00072 26.5 2.1 27 325-351 2-34 (105)
85 2ec4_A FAS-associated factor 1 31.2 91 0.0031 26.7 6.2 77 229-313 81-174 (178)
86 3pwf_A Rubrerythrin; non heme 30.7 1.7E+02 0.0057 24.9 7.8 34 307-351 113-146 (170)
87 1jwq_A N-acetylmuramoyl-L-alan 30.7 1.1E+02 0.0039 26.1 6.7 53 222-274 28-83 (179)
88 3iv4_A Putative oxidoreductase 29.4 30 0.001 27.7 2.5 34 321-354 4-41 (112)
89 1lxj_A YBL001C, hypothetical 1 29.2 66 0.0022 25.2 4.5 38 207-247 8-45 (104)
90 3f3q_A Thioredoxin-1; His TAG, 28.7 26 0.00088 26.7 2.0 27 325-351 8-38 (109)
91 3ff5_A PEX14P, peroxisomal bio 28.2 61 0.0021 22.4 3.6 36 308-343 7-42 (54)
92 1vk8_A Hypothetical protein TM 27.9 80 0.0027 24.9 4.7 42 200-247 13-54 (106)
93 1lxn_A Hypothetical protein MT 27.2 66 0.0022 24.9 4.1 38 207-247 4-41 (99)
94 2oe3_A Thioredoxin-3; electron 27.1 23 0.00078 27.4 1.4 28 324-351 13-44 (114)
95 3idv_A Protein disulfide-isome 27.0 86 0.0029 27.1 5.5 120 209-351 34-161 (241)
96 3ira_A Conserved protein; meth 25.9 2.5E+02 0.0086 23.7 8.1 85 230-318 66-158 (173)
97 1yqh_A DUF77, IG hypothetical 25.7 99 0.0034 24.4 5.0 37 207-247 10-46 (109)
98 4euy_A Uncharacterized protein 25.3 7.6 0.00026 29.5 -1.8 26 326-351 3-32 (105)
99 3li6_A Calcium-binding protein 24.2 1.5E+02 0.0053 19.3 5.9 50 290-339 14-63 (66)
100 3jrn_A AT1G72930 protein; TIR 23.5 75 0.0026 27.4 4.2 52 206-264 8-60 (176)
101 1r26_A Thioredoxin; redox-acti 23.4 33 0.0011 27.1 1.8 29 323-351 19-51 (125)
102 1gh2_A Thioredoxin-like protei 22.5 40 0.0014 25.2 2.0 28 324-351 2-35 (107)
103 2wz9_A Glutaredoxin-3; protein 22.5 33 0.0011 27.9 1.7 34 318-351 7-46 (153)
104 2epi_A UPF0045 protein MJ1052; 22.2 85 0.0029 24.3 3.9 37 207-247 9-45 (100)
105 3qay_A Endolysin; amidase A/B 22.0 1.9E+02 0.0064 24.7 6.5 124 222-360 29-160 (180)
106 3lp6_A Phosphoribosylaminoimid 21.5 3.9E+02 0.013 22.9 8.4 60 208-273 9-72 (174)
107 3ozi_A L6TR; plant TIR domain, 20.9 4.3E+02 0.015 23.2 9.0 143 206-360 35-194 (204)
108 3ne8_A N-acetylmuramoyl-L-alan 20.3 2.2E+02 0.0075 25.4 6.9 53 222-275 30-86 (234)
109 1ti3_A Thioredoxin H, PTTRXH1; 20.2 50 0.0017 24.6 2.2 29 323-351 4-40 (113)
No 1
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-100 Score=791.42 Aligned_cols=404 Identities=52% Similarity=1.017 Sum_probs=374.6
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+|+++++|+++|+|.|+++|++|++++++.++++||++|+||+|++.++|.+++||+++|.+|||+|+++|+.+|++++
T Consensus 44 lid~~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l 123 (519)
T 4hvc_A 44 MIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPI 123 (519)
T ss_dssp CEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEE
T ss_pred CeEecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccce
Confidence 57888999999999999999999999999999999999999999999999988899999999999999998875556789
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+||||+|++++++|++|++||++||+|+||||+|||||.+|++||+|+|||+|+|+|++|+++++|++|+..++++|.++
T Consensus 124 ~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i 203 (519)
T 4hvc_A 124 AIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQV 203 (519)
T ss_dssp EECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHhCCcceEeeCCCCcCcc------------------------------c----H------------------------
Q 015587 161 YEEFLAVPVIKGKKSELENS------------------------------K----F------------------------ 182 (404)
Q Consensus 161 ~~~l~~ipv~~g~~~~~ekf------------------------------~----F------------------------ 182 (404)
|++|+.+|+..+.++++++| + |
T Consensus 204 ~~~ll~lp~~~~~~t~~e~~~Ga~~t~~iEa~~p~~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~~g~~~~vh~~~~Gi~ 283 (519)
T 4hvc_A 204 YEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLT 283 (519)
T ss_dssp HHTTSCCCCEEEECCTTTSCTTSSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSTTCEEECEEEEEEEE
T ss_pred HHHhcCCcceeeecCCccccCCchhheeeeeeeccCCCEEeecccccccchhhhhcCcEEeccccCCCEEEEEEccccHH
Confidence 99986799988877766654 0 1
Q ss_pred -HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCC----CCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHH
Q 015587 183 -VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYK----DADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYS 257 (404)
Q Consensus 183 -Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~----~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~ 257 (404)
|+|++|+|+|+|++|++||+++||+||+|||++.+ +...+++.++|.+|++.|+++||+|++|+++++++|+||+
T Consensus 284 ~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~ 363 (519)
T 4hvc_A 284 TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFN 363 (519)
T ss_dssp THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHH
T ss_pred HHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999999999999731 1112568899999999999999999999998558999999
Q ss_pred HHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHH
Q 015587 258 HWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEA 337 (404)
Q Consensus 258 ~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~ 337 (404)
+|+++|||++|+||++|+++|+|+|++|++++|..|+++++++.|.++|++||++||++|++++++||+.++|||||+++
T Consensus 364 ~ael~GiP~~ivIG~kele~g~V~vr~R~tgeq~~v~~~el~~~l~~ll~~i~~~l~~~a~~~~~~~~~~~~~~~~~~~~ 443 (519)
T 4hvc_A 364 HWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKI 443 (519)
T ss_dssp HHHHTTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCSHHHHHHH
T ss_pred HHHhcCCCEEEEECchhhcCCeEEEEECCCCCccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCEEEcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEeecCCChhHHHHHHHhhcCC--------cCCCeeecccCCCCC-CCCCCcccccCCCcceEEEEeecC
Q 015587 338 LGQRKMILAPWCDEEEVEKDVKARTKGE--------MGAAKTLCSPLEQPE-VPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 338 ~~~~~~~~~pwc~~~~~e~~ik~~~~~~--------~~~~~~~c~p~~~~~-~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
|++||||++||||+.+||++||++|+++ +||||+|||||+++. ...+++|++||+||+.|++|||||
T Consensus 444 ~~~~~~~~~~w~~~~~~e~~ik~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~a~~~~~~~~~y 519 (519)
T 4hvc_A 444 LDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKNPAKYYTLFGRSY 519 (519)
T ss_dssp HHTTCEEEEEECCCHHHHHHHHHHHHC----------CCCEEEEEESSCSSCCCTTCBCCC--CBCCEEEEEECBC
T ss_pred HhcCCEEEEeccCCHHHHHHHHHHhccccccccccccCCceeeeccCCCcccCCCCCcccccCCcceEEEEEEEeC
Confidence 9999999999999999999999998532 589999999999874 335568999999999999999999
No 2
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=1.2e-99 Score=783.32 Aligned_cols=397 Identities=32% Similarity=0.560 Sum_probs=371.2
Q ss_pred CCcc-CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCc
Q 015587 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~-~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|+|| ++++|+++|+|.|+++|++|++++++.++++||++|+||+|++.++|.+++||+++|.+|||+|+++|+++++++
T Consensus 37 lid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~ 116 (518)
T 3ial_A 37 LVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEER 116 (518)
T ss_dssp CEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEE
T ss_pred CcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcc
Confidence 5677 899999999999999999999999999999999999999999999998889999999999999999886556689
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
++||||+|++++++|++|++||++||+|+|||++|||||.+|++||+|+|||+|+|+|+||++++++++|+..++++|.+
T Consensus 117 l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~ 196 (518)
T 3ial_A 117 LALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDT 196 (518)
T ss_dssp EEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HH-HHhCCcceEeeCCCCcCcc-----------------------------cH---------------------------
Q 015587 160 IY-EEFLAVPVIKGKKSELENS-----------------------------KF--------------------------- 182 (404)
Q Consensus 160 ~~-~~l~~ipv~~g~~~~~ekf-----------------------------~F--------------------------- 182 (404)
+| +.|| +|+.++.++++++| +|
T Consensus 197 i~~~~LG-lp~~~~~~~~~e~~~gA~yt~~iE~~~pdgr~ie~gt~~~Lg~~~s~rf~i~y~d~~g~~~~~h~~~~G~~~ 275 (518)
T 3ial_A 197 IFSDELC-FKGQKLRRVCWDRFPGADYSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGIST 275 (518)
T ss_dssp HHTTTTC-CCCEEEEECGGGCCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCCEECTTCCEECCEEEEEEEET
T ss_pred HHHHhcC-CcEEeeecChhhccCCCccceEEEEEcCCCCEEEEeceecccchhhhhcCcEEECCCCCEeeeEEeccchHH
Confidence 99 7775 89988877666553 11
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCC----ChhhHHHHHHHHHHHHhhC-CCEEEEeCCCCCChhHHHH
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDA----DTQGIFDACTATVEKLCEA-GIRANSDFRDNYSPGWKYS 257 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~----~~~~~~~~a~~i~~~Lr~~-Girv~~D~~~~~s~g~k~~ 257 (404)
|+|++|+|+|+|++|++||+++||+||+|||+..++. +.+++.++|.+|++.|+++ |+||++|+|++.++|+||+
T Consensus 276 R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~ 355 (518)
T 3ial_A 276 RVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLY 355 (518)
T ss_dssp HHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHH
T ss_pred HHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHHhccCeEEEEECCCCCCHHHHHH
Confidence 9999999999999999999999999999999985431 1156889999999999999 9999999994369999999
Q ss_pred HHHHcCCCEEEEECccccCCCeEEEEECCCCc--eeeechhhH---------------HHHHHHHHHHHHHHHHHHHHHH
Q 015587 258 HWEMKGVPLRIEIGPKDLANDQVRAVRRDNGA--KIDLPRGSL---------------VERVKELLEEVQESLFVAAKQR 320 (404)
Q Consensus 258 ~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~--k~~v~~~el---------------~~~i~~~l~~~~~~l~~~a~~~ 320 (404)
+|+++|||++|+||++|+++|+|+|++|++++ +..|++++| ++.|.++|++||++||++|+++
T Consensus 356 ~ael~GvP~~i~vG~ke~e~g~V~vr~Rd~~~~~k~~v~~~el~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~a~~~ 435 (518)
T 3ial_A 356 YYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMKVSSHTTENHELVVKNVIKDELDAYKARLKEKAFAF 435 (518)
T ss_dssp HHHHTTCSEEEEEEHHHHHTTEEEEEETTTCGGGCEEEEHHHHHCCC---------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEECcchhhCCEEEEEECCCCccceeEeeHHHHhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999 8999999999999999999999
Q ss_pred HHcCeeeccCHHHHHHHhcC-CCEEEeecCCCh----hHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcc
Q 015587 321 RDACIQIVKTWDEFVEALGQ-RKMILAPWCDEE----EVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAK 395 (404)
Q Consensus 321 ~~~~~~~~~~~~e~~~~~~~-~~~~~~pwc~~~----~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~ 395 (404)
+++||+.++|||||+++|++ ||||++||||+. +||++||++| |||+|||||+++. ..+.+|++||+||+
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~~~-----~~~~~~~p~~~~~-~~~~~c~~~g~~a~ 509 (518)
T 3ial_A 436 HNSMVTNCKSFDEIVACIENKGGLARFPFYTTEADGEVWDKKLKDAC-----SAEIRGHNPDENV-LPGEVCALSGKPAV 509 (518)
T ss_dssp HHHTEEECSSHHHHHHHHHHTCSEEEEEESCSSGGGHHHHHHHHHHH-----SCEEEEECTTSCC-CTTCBCTTTCSBCS
T ss_pred HHhCEEEcCCHHHHHHHHhcCCCEEEEEecCCCccchHHHHHHHHHh-----CCeEeccccccCC-CCCCeeeccCCcce
Confidence 99999999999999999976 589999999999 9999999999 9999999999854 24557999999999
Q ss_pred eEEEEeecC
Q 015587 396 KWTYWGRSY 404 (404)
Q Consensus 396 ~~~~~~rsY 404 (404)
.|++|||||
T Consensus 510 ~~~~~~~~y 518 (518)
T 3ial_A 510 CYMYCAKSY 518 (518)
T ss_dssp EEEEEECBC
T ss_pred EEEEEEEeC
Confidence 999999999
No 3
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=8.2e-96 Score=753.79 Aligned_cols=391 Identities=42% Similarity=0.780 Sum_probs=358.0
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+++++++|++||+|.|+++|++|++++++.++++||++|+||+|++.++|.+++||+++|.+|||+|+|+|++++++++
T Consensus 27 li~~~~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l 106 (477)
T 1hc7_A 27 LADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPL 106 (477)
T ss_dssp SEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEE
T ss_pred CeeecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeE
Confidence 45778899999999999999999999999999999999999999999999998899999999999999999865566999
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+||||+|++++++|++|++||++||+|+||||+|||||.+ ++||+|+|||+|+|+|++|++++++++|++.++++|.++
T Consensus 107 ~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~-~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i 185 (477)
T 1hc7_A 107 AVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR-TRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARL 185 (477)
T ss_dssp EECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-CBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCC-CCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999977 569999999999999999999999999999999999999
Q ss_pred H-HHhCCcceEeeCCCCcCcc-----------------------------cH---------------------------H
Q 015587 161 Y-EEFLAVPVIKGKKSELENS-----------------------------KF---------------------------V 183 (404)
Q Consensus 161 ~-~~l~~ipv~~g~~~~~ekf-----------------------------~F---------------------------R 183 (404)
| +.|| +|+.++.+++.++| +| |
T Consensus 186 ~~~~Lg-l~~~~~~~~~~e~~~g~~~~~~ie~~~~dgr~~~~gt~~~lg~~~s~~~g~~y~~~~G~~~~~~~~~~GigeR 264 (477)
T 1hc7_A 186 AREYAA-IPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWR 264 (477)
T ss_dssp HHHHHC-CCCEEEECCTTTSCTTSSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEETH
T ss_pred HHHhcC-CeEEEEeCChHHhcCCcccceEEEEEcCCCcEEEEeeeEEcccccccccCeEEECCCCCEEeeeEeeccHHHH
Confidence 9 7786 78888877655554 11 9
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCC-CCCChhHHHHHHHHc
Q 015587 184 QIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR-DNYSPGWKYSHWEMK 262 (404)
Q Consensus 184 li~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~-~~~s~g~k~~~ae~~ 262 (404)
+|++|+|+|+|++|++||+++||+||+|+|++.++ +.++..++|.+|++.|+++|++|++|++ + .++|+||++|+++
T Consensus 265 li~~lie~~~d~~gl~~P~~laP~qV~Iipi~~~~-~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~-~s~g~k~~~a~~~ 342 (477)
T 1hc7_A 265 FIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDE-SRERVLEAAQGLRQALLAQGLRVHLDDRDQ-HTPGYKFHEWELK 342 (477)
T ss_dssp HHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCCTT-THHHHHHHHHHHHHHHHHTTCCEEECCCSS-SCHHHHHHHHHHT
T ss_pred HHHHHHHHhCccccccCCcccCCceEEEEEcCCcc-hHHHHHHHHHHHHHHHHhCCEEEEEeCCCC-CCHHHHHHHHhhc
Confidence 99999999999999999999999999999997532 1126889999999999999999999998 6 6999999999999
Q ss_pred CCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhcCCC
Q 015587 263 GVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRK 342 (404)
Q Consensus 263 GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~ 342 (404)
|+|++|+||++|+++|+|+|++|+ ++|..|+++++++.|.+++++||++||++|++++++||+.++|||||+++|+ ||
T Consensus 343 G~p~~iiiG~~el~~~~V~vr~r~-~eq~~v~~~el~~~l~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~-~~ 420 (477)
T 1hc7_A 343 GVPFRVELGPKDLEGGQAVLASRL-GGKETLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFKEAVQ-EG 420 (477)
T ss_dssp TCSEEEEECHHHHHTTEEEEEETT-SCCCEEEGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTEEECSSHHHHHHHTT-TS
T ss_pred CCCEEEEECcchhcCCEEEEEEec-CceEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCEEECCCHHHHHHHHh-CC
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999 88
Q ss_pred EEEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcce--EEEEeecC
Q 015587 343 MILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKK--WTYWGRSY 404 (404)
Q Consensus 343 ~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~--~~~~~rsY 404 (404)
||++||||+.+||++||++| |||+|||||+++.. .+ +|++||+||++ |++|||||
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~~~~~-~~-~c~~~~~~~~~~~~~~~~~~y 477 (477)
T 1hc7_A 421 FALAFHCGDKACERLIQEET-----TATTRCVPFEAEPE-EG-FCVRCGRPSAYGKRVVFAKAY 477 (477)
T ss_dssp EEEECCCCCHHHHHHHHHHH-----CCEEEEEESSSCCC-CC-BCTTTCCBCCTTSCEEEECBC
T ss_pred EEEEecCCCHHHHHHHHHHh-----CCceeecccccccC-CC-CCCCCCCcccceeEEEEEeeC
Confidence 99999999999999999999 99999999998753 24 59999999999 99999999
No 4
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=1.6e-91 Score=725.79 Aligned_cols=389 Identities=35% Similarity=0.650 Sum_probs=361.2
Q ss_pred CCcc-CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCc
Q 015587 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~-~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|+++ ++++|+++|+|.|+++|++|++++++.+++ ||++|+||+|++.++|.+++||+++|.++||+|+++|+++++++
T Consensus 53 lid~~~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~ 131 (501)
T 1nj1_A 53 IIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRK 131 (501)
T ss_dssp CEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEE
T ss_pred CccccCCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCe
Confidence 4566 789999999999999999999999999999 99999999999999998889999999999999999875444589
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeE-EeceeeecCChhhHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFL-WQEGHTAFATKSEADDEVLQILELYR 158 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~-q~e~~~~~~~~~~a~~e~~~~~~~y~ 158 (404)
++||||+|++++++|++|++||++||+|+||||+|||||.+.|+||+|+|||+ |+|+|++|++++++++|+..++++|.
T Consensus 132 l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~ 211 (501)
T 1nj1_A 132 LALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYK 211 (501)
T ss_dssp EEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976488999999999 99999999999999999999999999
Q ss_pred HHHHHhCCcceEeeCCCCcCcc-----------------------------cH---------------------------
Q 015587 159 RIYEEFLAVPVIKGKKSELENS-----------------------------KF--------------------------- 182 (404)
Q Consensus 159 ~~~~~l~~ipv~~g~~~~~ekf-----------------------------~F--------------------------- 182 (404)
++|+.|| +|+.++.++..++| +|
T Consensus 212 ~i~~~Lg-l~~~~~~~~~~e~~~~a~~~~die~~l~~g~~~ei~t~~~lg~~~a~~~~~ry~~~~g~~~~~h~~g~Gige 290 (501)
T 1nj1_A 212 EFFNSLG-IPYLITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLSD 290 (501)
T ss_dssp HHHHHHT-CCCEEEECCTTTSCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEECT
T ss_pred HHHHHCC-CeEEEEeCCchhhcCCcccceEEEEEcCCCCEEEEEEEEeccccchhhcCeEEECCCCCEEeeeeccccHHH
Confidence 9999987 78877766544433 00
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEe-cCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHH
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPV-PYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEM 261 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi-~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~ 261 (404)
|+|++|+|+|+|++|+.||++++|+||+|+|+ ..++ .++..++|.+|++.|+++|++|++|+++ .++|+||++|++
T Consensus 291 Rli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~~~~~--~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~-~s~g~k~~~a~~ 367 (501)
T 1nj1_A 291 RVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKA--AEEVMEACRELRSRLEAAGFRVHLDDRD-IRAGRKYYEWEM 367 (501)
T ss_dssp HHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSSSS--HHHHHHHHHHHHHHHHTTTCCEEECCCS-SCHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccCccCCccccCceEEEEEeccCCc--hHHHHHHHHHHHHHHHhCCCEEEEECCC-CCHHHHHHHHHh
Confidence 99999999999999999999999999999999 5211 0368899999999999999999999997 699999999999
Q ss_pred cCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhcC-
Q 015587 262 KGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQ- 340 (404)
Q Consensus 262 ~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~- 340 (404)
+|+|++|+||++|+++|+|+|++|++++|..|+++++++.|.+++++||++||++|++++++||+.++|||||+++|++
T Consensus 368 ~G~p~~iiiG~~e~~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 447 (501)
T 1nj1_A 368 RGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKDILENLRTRAWERMESEIREAETLEEASRIVDEK 447 (501)
T ss_dssp EECSEEEEECHHHHTTTEEEEEESSSCCEEEEETTTHHHHHHHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHHH
T ss_pred cCCCEEEEECcchhhCCEEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCEEEcCCHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCEEEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 341 RKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 341 ~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
||||++||||+.+||++||++| |||+|||| + +. ++ +|++||+||+.|++|||||
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p-~-~~--~~-~c~~~~~~~~~~~~~~~~y 501 (501)
T 1nj1_A 448 RGIISFMWCGEEECGMDVEEKV-----RVDILGIQ-E-EG--SG-TCINCGREAPYRAYLARTY 501 (501)
T ss_dssp CSEEEEEECCCHHHHHHHHHHH-----TCEEEEEE-E-CS--CC-BCTTTCSBCCEEEEEECBC
T ss_pred CCEEEEecCCCHHHHHHHHHHh-----CCceeccC-C-CC--CC-cCcCcCCchheEEEEEeeC
Confidence 7899999999999999999999 99999999 4 32 34 5999999999999999999
No 5
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=1.1e-87 Score=690.94 Aligned_cols=378 Identities=33% Similarity=0.636 Sum_probs=354.1
Q ss_pred CCcc-CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCc
Q 015587 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~-~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|+++ ++++|+++|+|.|+++|++|++++++.++++||++|+||+|++.++|.+++||+++|.+|||+|+|+|+++++++
T Consensus 20 li~~~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~ 99 (459)
T 1nj8_A 20 IYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVK 99 (459)
T ss_dssp SCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEE
T ss_pred CccccCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCe
Confidence 5677 899999999999999999999999999999999999999999999999899999999999999999985555699
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeE-EeceeeecCChhhHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFL-WQEGHTAFATKSEADDEVLQILELYR 158 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~-q~e~~~~~~~~~~a~~e~~~~~~~y~ 158 (404)
++||||+|++++++|++|++||++||+|+||||+|||||.++|+||+|+|||+ |+|+|++|+++++|++|+..++++|.
T Consensus 100 l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~ 179 (459)
T 1nj8_A 100 LALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYK 179 (459)
T ss_dssp EEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999965488999999999 99999999999999999999999999
Q ss_pred HHHHHhCCcceEeeCCCCcCcc-----------------------------cH---------------------------
Q 015587 159 RIYEEFLAVPVIKGKKSELENS-----------------------------KF--------------------------- 182 (404)
Q Consensus 159 ~~~~~l~~ipv~~g~~~~~ekf-----------------------------~F--------------------------- 182 (404)
++|+.|| +|+.++.+++.++| +|
T Consensus 180 ~~~~~LG-l~~~~~~~~~~ek~~ga~~~~~ie~~~~dg~~~e~gt~~~lg~~~s~~~~~~Y~~~~G~~~~v~~~~~Gige 258 (459)
T 1nj8_A 180 KFFDTLG-IPYLISKRPEWDKFPGAEYTMAFDTIFPDGRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGISD 258 (459)
T ss_dssp HHHHHHT-CCCEEEEECTTSCCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEEECTTSSEEECEEEEEEECT
T ss_pred HHHHHCC-CceEEeecCchhhcCCcccceeEEEEcCCCcEEEEEEEeecccccccccCeEEECCCCCEeeeeEeeccHHH
Confidence 9999987 78877766554544 11
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEe-cCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHH
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPV-PYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEM 261 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi-~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~ 261 (404)
|+|++|+|+|+|++|+.||+++||+||+|+|+ +.++ .++..++|.+|++.|+++ ++|++|+++ .++|+||++|++
T Consensus 259 Rli~alie~~~d~~gl~~P~~laP~qv~Iipi~~~~~--~~~~~~~a~~l~~~Lr~~-i~v~~D~~~-~~~g~k~~~a~~ 334 (459)
T 1nj8_A 259 RVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGK--EDIVMEKAKEIYEKLKGK-FRVHIDDRD-IRPGRKFNDWEI 334 (459)
T ss_dssp HHHHHHHHHHCBTTBCCCCTTSCSSSEEEEECCCSSC--HHHHHHHHHHHHHHHHTT-SCEEECCSC-SCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceeEcCCcCCCCcEEEEecccCCc--HHHHHHHHHHHHHHHhhh-cEEEEECCC-CCHHHHHHHHHH
Confidence 99999999999999999999999999999999 5311 036889999999999999 999999997 699999999999
Q ss_pred cCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCH--HHHHHHhc
Q 015587 262 KGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTW--DEFVEALG 339 (404)
Q Consensus 262 ~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~--~e~~~~~~ 339 (404)
+|+|++|+||++|+++|+|+|++|++++|..|+++++++.|.+++++||++||++|++++++||+.++|| |||+++|+
T Consensus 335 ~G~p~~iiiG~~el~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 414 (459)
T 1nj8_A 335 KGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNNIMENIKNRAWEKFENFITILEDINPDEIKNILS 414 (459)
T ss_dssp TTCSEEEEECHHHHHTTEEEEEETTTCCEEEEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECSSCCHHHHHHHTT
T ss_pred cCCCEEEEECcchhcCCEEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCEEEcccCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred C-CCEEEeecCCChhHHHHHHHhhcCCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015587 340 Q-RKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 404 (404)
Q Consensus 340 ~-~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~~~~a~~~~~~~rsY 404 (404)
+ ||||++|| |+.+||++||++| |||+|||| + +||++|++|||||
T Consensus 415 ~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~-~--------------~~~~~~~~~~~~y 459 (459)
T 1nj8_A 415 EKRGVILVPF-KEEIYNEELEEKV-----EATILGET-E--------------YKGNKYIAIAKTY 459 (459)
T ss_dssp TTCSEEEEEC-CGGGCSHHHHHHH-----SSCEEEEE-E--------------CSSSEEEEEECBC
T ss_pred hCCCEEEEec-CCHHHHHHHHHHh-----CCeeccCc-C--------------CcccEEEEEEeeC
Confidence 7 78999999 9999999999999 99999999 2 8999999999999
No 6
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=7.3e-59 Score=476.42 Aligned_cols=288 Identities=21% Similarity=0.306 Sum_probs=257.3
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHH-HhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~-~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
.++|+++|+|.|+++|++|++++++.+ +++||++|.||+|++.++|. ++||++.|.++||+|++++. .++.++|||
T Consensus 52 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~-~sGh~~~~~~emy~~~d~~~--~~~~l~LrP 128 (460)
T 3uh0_A 52 LSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWE-KSGHWENYADDMFKVETTDE--EKEEYGLKP 128 (460)
T ss_dssp TSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHH-HHTCTTTSGGGSCEECC--------CEEECS
T ss_pred CCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHH-hcCCccccccceEEEecCCC--CCceEEEcc
Confidence 489999999999999999999999999 99999999999999999997 48999999999999998641 128899999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH-H
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY-E 162 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~-~ 162 (404)
|+|++++.+|+++++||++||+|+||||+|||||.++ ++||+|+|||+|+|+|+| ++++++++|+..+++++.++| +
T Consensus 129 t~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f-~~~e~~~~e~~~~i~~~~~~~~~ 207 (460)
T 3uh0_A 129 MNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNK 207 (460)
T ss_dssp CSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEE-cCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999775 589999999999999995 667899999999999999999 8
Q ss_pred HhCCcc-----------eEeeCCCCcCcc---------------------------------------------------
Q 015587 163 EFLAVP-----------VIKGKKSELENS--------------------------------------------------- 180 (404)
Q Consensus 163 ~l~~ip-----------v~~g~~~~~ekf--------------------------------------------------- 180 (404)
.|| +| +.++.++ ++|
T Consensus 208 ~lG-l~~~~~~~~~~~~~~l~t~p--e~~~G~~~~w~~ae~~L~~~l~~~g~~~~~~~g~gafygpkid~~~~d~~gr~~ 284 (460)
T 3uh0_A 208 IFP-FVKGGSGAESNYFINFSTRP--DHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLDIMVTDHLRKTH 284 (460)
T ss_dssp TSC-CC-----CCSSCEEEEECCC--SSCCSCHHHHHHHHHHHHHHHHHHTCCEEEETTCSCSSCCEEEEEEECTTSCEE
T ss_pred HcC-CCCcccccccceEEEEccCC--cccCCCHHHHHHHHHHHHHHHHHhCCCeeECCCccccccceEEEEEEccCCCee
Confidence 776 56 4443322 111
Q ss_pred -------c------H--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCCh
Q 015587 181 -------K------F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADT 221 (404)
Q Consensus 181 -------~------F--------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~ 221 (404)
+ | |+|++|+|.| |+.||+|+||+||+|+|++.++
T Consensus 285 q~~Tiqld~~~~~rf~l~y~~~~g~~~~P~~ih~~~~Gg~eRli~~Lie~~----~g~~P~~laP~qv~Vipi~~~~--- 357 (460)
T 3uh0_A 285 QVATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSN----EGRWPFWLNPYQAVIIPVNTKN--- 357 (460)
T ss_dssp EEEEEEEESHHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHH----TTCCCGGGCSCCEEEEESSTTC---
T ss_pred eecccccccccccccceEEECCCCCccCcEEEecCcchHHHHHHHHHHHHc----CCCCCCCCCCceEEEEEecCCc---
Confidence 0 1 9999999987 5799999999999999998642
Q ss_pred hhHHHHHHHHHHHHhhC--------------CCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCC
Q 015587 222 QGIFDACTATVEKLCEA--------------GIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDN 287 (404)
Q Consensus 222 ~~~~~~a~~i~~~Lr~~--------------Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~ 287 (404)
++..++|.+|++.|+++ |++|++|+++ .++|+||++|+++|+|++|+||++|+++|+|+||+|++
T Consensus 358 ~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~-~~lg~k~r~Ad~~g~p~~ivvG~~E~~~g~Vtvr~r~~ 436 (460)
T 3uh0_A 358 VQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRN-EPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRERDN 436 (460)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCS-SCHHHHHHHHHHHTCSEEEEECHHHHHHTCEEEEEGGG
T ss_pred HHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCC-CCHHHHHHHHHHcCCCEEEEEcchhhhCCeEEEEECCC
Confidence 45889999999999998 9999999997 69999999999999999999999999999999999999
Q ss_pred Cc-eeeechhhHHHHHHHHHHH
Q 015587 288 GA-KIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 288 ~~-k~~v~~~el~~~i~~~l~~ 308 (404)
++ |..++++++++.|.+++++
T Consensus 437 ~e~q~~v~~~el~~~l~~~~~~ 458 (460)
T 3uh0_A 437 RKSFEKLTMSQIWEKFIELEKN 458 (460)
T ss_dssp TTSCEEECHHHHHHHHHHHHHT
T ss_pred CceeEEeeHHHHHHHHHHHHHh
Confidence 99 9999999999999988865
No 7
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=1.7e-55 Score=452.46 Aligned_cols=288 Identities=22% Similarity=0.386 Sum_probs=260.3
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|. .+|||+.|.++||+|+|+++ +.++|||
T Consensus 54 ~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~-~sg~~d~~~~em~~~~d~~~----~~~~LrP 128 (458)
T 2i4l_A 54 QEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWR-ESGRYDAYGPEMLRIADRHK----RELLYGP 128 (458)
T ss_dssp EEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHH-HHTHHHHSCTTSEEEECTTC----CEEEECS
T ss_pred ccCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHH-hcCCccccccceEEEEeCCC----CeEEECC
Confidence 347999999999999999999999999999999999999999999995 57999999999999999988 8999999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
|+|..++.+++.++.||++||+|+||+|+|||+|.+|+.||+|+|||+|.|+|+||.+.+++++|++.++++|.++|+.+
T Consensus 129 t~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~l 208 (458)
T 2i4l_A 129 TNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARM 208 (458)
T ss_dssp CCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999998
Q ss_pred CCcceEe----------------------eCC-----------------CC--------------c--------------
Q 015587 165 LAVPVIK----------------------GKK-----------------SE--------------L-------------- 177 (404)
Q Consensus 165 ~~ipv~~----------------------g~~-----------------~~--------------~-------------- 177 (404)
| +++.+ |.. .. .
T Consensus 209 G-l~~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~~~~~~~~~n~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~g~~~~ 287 (458)
T 2i4l_A 209 G-LKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPIIKQWTSVYAATEDVHEPARYE 287 (458)
T ss_dssp T-CCEEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCCTTSCCHHHHHHHHHSCEEETTTCCTTHHH
T ss_pred C-CceEEEEccccccCCccchhhhhhhhcCcceEEecccccccCHHHHhccccHhHHHHHhcCchhhhcChhhccccccc
Confidence 7 44321 100 00 0
Q ss_pred -Cc----------------c---------------------------cH-----HHHHHHHHHcCCCCCCCCCCCCCCce
Q 015587 178 -EN----------------S---------------------------KF-----VQIGVMVMVHGDDKGLMLPPKVASVQ 208 (404)
Q Consensus 178 -ek----------------f---------------------------~F-----Rli~~Lie~~~d~~Gl~lP~~iap~q 208 (404)
.. | .| |++++|+++|.|++|+.||+++||+|
T Consensus 288 ~~~~~~~l~~~rgl~~G~iFelg~~~s~~~g~ry~~~~G~~~p~~~~gfgiGveRli~al~e~~~d~~g~~~p~~~ap~~ 367 (458)
T 2i4l_A 288 SEVPEANRLNTRGIEVGQIFYFGTKYSDSMKANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFR 367 (458)
T ss_dssp HHSCTTTEEEEEEEEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEEHHHHHHHHHHHSEETTEECCCTTTCSCS
T ss_pred CCCCCcCceeeeeeccCcEEEecccccccCCcEEECCCCCEeceEEeeecccHHHHHHHHHHhhccccCCcCCcccCCce
Confidence 00 1 01 99999999999999999999999999
Q ss_pred EEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCC
Q 015587 209 VIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNG 288 (404)
Q Consensus 209 V~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~ 288 (404)
|+|+|++.++ ++..++|.+|++.|+++|++|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+||+|+++
T Consensus 368 v~vi~~~~~~---~~~~~~a~~l~~~Lr~~Gi~v~~D~~~-~~~g~k~~~ad~~g~p~~iivG~~e~~~g~v~vr~r~~~ 443 (458)
T 2i4l_A 368 VTILNLKQGD---AATDAACDQLYRELSAKGVDVLYDDTD-QRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDG 443 (458)
T ss_dssp EEEEESSTTC---HHHHHHHHHHHHHHHHTTCCEEEECSS-CCHHHHHHHHHHHTCSEEEEECHHHHTTTEEEEEETTTC
T ss_pred EEEEecCCCC---HHHHHHHHHHHHHHhhCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEECCchhhCCEEEEEECCCC
Confidence 9999996432 568899999999999999999999997 599999999999999999999999999999999999999
Q ss_pred ceeeechhhHHHHH
Q 015587 289 AKIDLPRGSLVERV 302 (404)
Q Consensus 289 ~k~~v~~~el~~~i 302 (404)
++..++++++++.|
T Consensus 444 ~~~~v~~~~l~~~l 457 (458)
T 2i4l_A 444 ARENLALADVVARL 457 (458)
T ss_dssp CEEEEETTTTTCC-
T ss_pred cEEEEeHHHHHHhh
Confidence 99999999987644
No 8
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=6e-55 Score=464.36 Aligned_cols=285 Identities=20% Similarity=0.338 Sum_probs=257.5
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
.++|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|.+ ||||+.|.++||. +|+++ +.++||||
T Consensus 259 ~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~~my~-~d~~~----~~~~LrP~ 332 (642)
T 1qf6_A 259 EAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSEN----REYCIKPM 332 (642)
T ss_dssp TSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-HSHHHHHGGGCEE-EEETT----EEEEECSS
T ss_pred CCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhh-cCcccccccccee-eecCC----ceEEecCC
Confidence 489999999999999999999999999999999999999999999976 8999999999999 88887 89999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC-CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+|++++++|+++++||++||+|+||+|+|||||.+ |++||+|+|||+|.|+|+|+ +++++++|+..+++++.++|+.|
T Consensus 333 ~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~-~~~~~~~e~~~~i~~~~~i~~~l 411 (642)
T 1qf6_A 333 NCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEEQIRDEVNGCIRLVYDMYSTF 411 (642)
T ss_dssp SHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEc-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999987 58899999999999999966 67899999999999999999999
Q ss_pred CCcceE--eeCCCC--------cC--------------------------------------------------ccc---
Q 015587 165 LAVPVI--KGKKSE--------LE--------------------------------------------------NSK--- 181 (404)
Q Consensus 165 ~~ipv~--~g~~~~--------~e--------------------------------------------------kf~--- 181 (404)
|+-++. ++.+++ |+ .|+
T Consensus 412 Gl~~~~v~l~~~~e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~~~~~gti~~df~l~~ 491 (642)
T 1qf6_A 412 GFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPS 491 (642)
T ss_dssp TCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCEEEEEEEEEESSHHH
T ss_pred CCCceEEEEecCcccccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCceEEeeeEEEeccCCc
Confidence 842543 222110 00 010
Q ss_pred -H--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHH
Q 015587 182 -F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEK 234 (404)
Q Consensus 182 -F--------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~ 234 (404)
| |+|++|+|+|+ ..||+|+||+||+|+|++ ++..++|.+|++.
T Consensus 492 r~~~~y~~~~g~~~~P~~~hrai~G~ieR~i~~liE~~~----~~~P~~laP~qv~vipi~------~~~~~~a~~v~~~ 561 (642)
T 1qf6_A 492 RLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFA----GFFPTWLAPVQVVIMNIT------DSQSEYVNELTQK 561 (642)
T ss_dssp HTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHT----TCCCTTTCSSCEEEEESS------HHHHHHHHHHHHH
T ss_pred cCCCEEEecCCCCcCcEEEEeccCCCHHHHHHHHHHHhc----CCCCcccCCceEEEEEeC------HHHHHHHHHHHHH
Confidence 0 99999999985 389999999999999997 4788999999999
Q ss_pred HhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 235 LCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 235 Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
|+++|++|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+||+|+++++..++++++++.|.++++.
T Consensus 562 L~~~Gi~v~~D~~~-~~~g~kir~a~~~g~p~~ivvG~~E~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~~ 634 (642)
T 1qf6_A 562 LSNAGIRVKADLRN-EKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRS 634 (642)
T ss_dssp HHTTTCCEEEECCS-SCHHHHHHHHHHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHHHT
T ss_pred HHhCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECchhhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHhh
Confidence 99999999999997 59999999999999999999999999999999999999999999999999988776653
No 9
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=2.4e-54 Score=437.10 Aligned_cols=285 Identities=20% Similarity=0.328 Sum_probs=256.2
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccC
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRP 84 (404)
..++|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||+ .|+++ +.++|||
T Consensus 17 ~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~em~~-~d~~~----~~~~LrP 90 (401)
T 1evl_A 17 EEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSEN----REYCIKP 90 (401)
T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HTHHHHSGGGCCE-EEETT----EEEEECS
T ss_pred CCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHh-cCcHhhhchhhEe-EecCC----ceEEEcC
Confidence 4589999999999999999999999999999999999999999999976 8999999999999 88887 8999999
Q ss_pred CChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC-CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+|++++++|++++.||++||+|+||+|+|||||.+ |++||+|+|||+|.|+|+++ +++++++|+..++++|.++|+.
T Consensus 91 ~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~-~~~~~~~e~~e~i~~~~~~~~~ 169 (401)
T 1evl_A 91 MNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEEQIRDEVNGCIRLVYDMYST 169 (401)
T ss_dssp CSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 78899999999999999875 6899999999999999999999
Q ss_pred hCCcce--EeeCCC--------------------------------------------------CcC--------ccc--
Q 015587 164 FLAVPV--IKGKKS--------------------------------------------------ELE--------NSK-- 181 (404)
Q Consensus 164 l~~ipv--~~g~~~--------------------------------------------------~~e--------kf~-- 181 (404)
||.-++ .++..+ -++ .|+
T Consensus 170 lgl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~G~~~~~gt~~~d~~l~ 249 (401)
T 1evl_A 170 FGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLP 249 (401)
T ss_dssp TTCSCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTTCCEEEEEEEEEESSHH
T ss_pred cCCCceEEEEecCCcccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcCeEEEecCCCeEEeeeeeeccccc
Confidence 984254 222210 000 010
Q ss_pred ------------------------H----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHH
Q 015587 182 ------------------------F----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVE 233 (404)
Q Consensus 182 ------------------------F----Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~ 233 (404)
| |++++|++.|++ .||++++|+||+|+|++ ++..++|.+|++
T Consensus 250 ~~~~~~y~~~~g~~~~p~~~~~~~~GgieRli~~l~e~~~~----~~p~~~ap~~v~vi~~~------~~~~~~a~~l~~ 319 (401)
T 1evl_A 250 SRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAG----FFPTWLAPVQVVIMNIT------DSQSEYVNELTQ 319 (401)
T ss_dssp HHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTT----CCCTTTCSSCEEEEESS------GGGHHHHHHHHH
T ss_pred cccCCEEECCCCCCcCcEEEEecCCCcHHHHHHHHHHHhCC----cCCCCCCCeEEEEEecC------HHHHHHHHHHHH
Confidence 0 999999998853 79999999999999997 357889999999
Q ss_pred HHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 234 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 234 ~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
.||++|++|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+||+|++++|..++++++++.++++++
T Consensus 320 ~Lr~~Gi~v~~d~~~-~~~~~k~~~A~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~q~~v~~~el~~~l~~~~~ 392 (401)
T 1evl_A 320 KLSNAGIRVKADLRN-EKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIR 392 (401)
T ss_dssp HHHHTTCCEEEECCS-SCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTSCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHh
Confidence 999999999999987 5999999999999999999999999999999999999999999999999988876654
No 10
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=5.2e-54 Score=442.85 Aligned_cols=301 Identities=18% Similarity=0.199 Sum_probs=265.0
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
.++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++|.+ +||++.|.++||+| |+++ +.++||||
T Consensus 37 ~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sg~~~~~~~emy~~-d~~~----~~l~LRP~ 110 (471)
T 3a32_A 37 TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKV-SGHIEFYRNNMYLF-DIEG----HEFAVKPM 110 (471)
T ss_dssp HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-TCCCTTGGGGSEEE-EETT----EEEEECSC
T ss_pred cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhh-ccCccccccceEEE-ecCC----cEEEEccc
Confidence 579999999999999999999999999999999999999999999965 78999999999999 7777 89999999
Q ss_pred ChhHHHHHHHhhhccCC---CCCeEEEeeeceeecCCCCC-CCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHR---DLPLKLNQWCNVVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~---~lPlk~~q~~~vfR~E~~~~-~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
+|++++++|+++++||+ +||+|+||||+|||||.++. +||+|+|||+|.|+|+|+. ++++.+|+..++++|.++|
T Consensus 111 ~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~-~~~~~de~~e~i~~~~~~l 189 (471)
T 3a32_A 111 NCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVP-GGRVIDVVYDVFEEMKLVL 189 (471)
T ss_dssp SHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEE-GGGHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcC-hHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 99999999999999997633 8999999999999999864 5567778888888899999
Q ss_pred HH-hCC----cce--EeeCCC-----C------------------------------------------------c-C--
Q 015587 162 EE-FLA----VPV--IKGKKS-----E------------------------------------------------L-E-- 178 (404)
Q Consensus 162 ~~-l~~----ipv--~~g~~~-----~------------------------------------------------~-e-- 178 (404)
++ ||. -++ .+|..+ + . +
T Consensus 190 ~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~gp~i~~~l~d~~ 269 (471)
T 3a32_A 190 ERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIMMVEE 269 (471)
T ss_dssp HHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEETTCSBTTBCEEEEEEEEES
T ss_pred HHhhCCCcCCCCeEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCceEecccchhhCCCccceEEeccH
Confidence 99 874 144 333321 0 0 1
Q ss_pred ----cc----------------c--H-----------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEE
Q 015587 179 ----NS----------------K--F-----------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIP 213 (404)
Q Consensus 179 ----kf----------------~--F-----------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iip 213 (404)
++ + | |++++|++.|+ | .||+++||+||+|+|
T Consensus 270 ~~l~~~~~~g~~~lD~~l~r~~d~~Yyt~~~~G~~e~~~i~~~i~GgieRli~~lie~~~---g-~~p~~~ap~qv~Iip 345 (471)
T 3a32_A 270 SGVSKEWQMGTIQFDFNLPRRFRLYDVVREEFGIEEVYIIHRALLGSIERFLGVYLEHRR---G-RMPFTLAPIQFAVIA 345 (471)
T ss_dssp SSCEEEEEEEEEEEESSHHHHTTHHHHHHHHHCCSCEEEEEEEEEEEHHHHHHHHHHHTT---T-CCCGGGCSCSEEEEE
T ss_pred HhhhhhheeeeEEecccccccCCceEeccccCCceeeEEEeccccCcHHHHHHHHHHHhC---C-CCCCCcCCceEEEEE
Confidence 11 1 1 99999999874 3 899999999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeC-CCCCChhHHHHHHH-HcCCCEEEEECccccCCCeEEEEECCCCc--
Q 015587 214 VPYKDADTQGIFDACTATVEKLCEAGIRANSDF-RDNYSPGWKYSHWE-MKGVPLRIEIGPKDLANDQVRAVRRDNGA-- 289 (404)
Q Consensus 214 i~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~-~~~~s~g~k~~~ae-~~GvP~~iiIG~~E~~~~~V~v~~r~~~~-- 289 (404)
++.+++..++..++|.+|++.||++|++|++|+ ++ .++|+||++|+ ++|+|++|+||++|+++|+|+|++|++++
T Consensus 346 ~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~-~~~g~k~~~a~~~~gip~~iiiG~~e~~~~~V~vr~r~~~~q~ 424 (471)
T 3a32_A 346 VKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSK-TGLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFDLESMK 424 (471)
T ss_dssp EECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEET-TTHHHHHHHHHHTTCCSEEEEECHHHHHHTEEEEEEEETTTTE
T ss_pred ccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCCC-CCHHHHHHHHHHhcCCCEEEEECchhhhCCEEEEEECCCCccc
Confidence 974322235688999999999999999999999 77 59999999999 99999999999999999999999999998
Q ss_pred eeeechh-----hHHHHHHHHHHHHHHHHHHHHH
Q 015587 290 KIDLPRG-----SLVERVKELLEEVQESLFVAAK 318 (404)
Q Consensus 290 k~~v~~~-----el~~~i~~~l~~~~~~l~~~a~ 318 (404)
+..|+++ ++++.|.++|++||++|++.|-
T Consensus 425 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T 3a32_A 425 RRRLAIAYGDAADAVENLAAVAEELESPVRSLSG 458 (471)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eEEEeecccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999 9999999999999999999873
No 11
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=4.3e-54 Score=453.60 Aligned_cols=290 Identities=20% Similarity=0.330 Sum_probs=261.9
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
.++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++|. .+||++.|.++||+|+|+++ +.++||||
T Consensus 35 ~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~-~sG~~~~~~~~m~~~~d~~~----~~~~LrP~ 109 (572)
T 2j3l_A 35 VAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWK-ESGRYETYGPNLYRLKDRND----RDYILGPT 109 (572)
T ss_dssp EETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHH-HHSHHHHSCTTSCEEECTTC----CEEEECSC
T ss_pred cCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHH-hcCCccccchheEEEecCCC----CeEEEccc
Confidence 46999999999999999999999999999999999999999999995 57999999999999999887 89999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
+|++++++|+++++||++||+|+||+|+|||||.+|+.||+|+|||+|.|+|+||.+++++++|++.++++|.++|+.||
T Consensus 110 ~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lg 189 (572)
T 2j3l_A 110 HEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCG 189 (572)
T ss_dssp CHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999987678999999999999999999999999999999999999999986
Q ss_pred CcceEee-------------------------------------------------------------------------
Q 015587 166 AVPVIKG------------------------------------------------------------------------- 172 (404)
Q Consensus 166 ~ipv~~g------------------------------------------------------------------------- 172 (404)
+++.+.
T Consensus 190 -l~~~~~~~~~g~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~l~~ 268 (572)
T 2j3l_A 190 -LEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQLDLEKIATPEVGTIAEVAN 268 (572)
T ss_dssp -CCEEEEECCGGGGTCSSEEEEEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCCCCCCCEEEECTTCCSHHHHHH
T ss_pred -CcEEEEecccccCCCcccEEEEEEcCCCcceEEEeCCCCcccchhhhhcccccccccccccccceecCCCCCcHHHHHH
Confidence 332110
Q ss_pred ------------------------------------------C----------------------CC-----C-------
Q 015587 173 ------------------------------------------K----------------------KS-----E------- 176 (404)
Q Consensus 173 ------------------------------------------~----------------------~~-----~------- 176 (404)
. .+ .
T Consensus 269 ~lg~~~~~i~K~l~~~~~~~~~~vli~gd~el~~~kl~~~l~~~~l~~a~~~el~~~~g~~~g~~~p~gl~~~i~~~iD~ 348 (572)
T 2j3l_A 269 FFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKLKNFLGADFLDEATEEDARRVLGAGFGSIGPVNVSEDVKIYADL 348 (572)
T ss_dssp HHTCCGGGBEEEEEEEETTEEEEEEEETTCCBCHHHHHHHHTCSCEEECCHHHHHHHHSSCTTSCCSTTCCTTCEEEEET
T ss_pred HhCcCHHHeEEEEEEEeCCcEEEEEeeCccccCHHHHHHhhCCCccccCCHHHHHHhhCCCccccCCccCCCCCcEEEeh
Confidence 0 00 0
Q ss_pred -------------------------c---------------------------------------------Ccc------
Q 015587 177 -------------------------L---------------------------------------------ENS------ 180 (404)
Q Consensus 177 -------------------------~---------------------------------------------ekf------ 180 (404)
. +.|
T Consensus 349 sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~gg~~~~~~~ievg~~f~Lg~~ys~~~~~~~~~ 428 (572)
T 2j3l_A 349 AVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLD 428 (572)
T ss_dssp TTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTSSSBEEEEEEEEEEEEEEEETHHHHHHTCEEEC
T ss_pred hhhcCCceEEccCCCCceeeccccccCcCcCcHHHHHHHhcCCcccccCCcceeccceEEEEEeccCcccccccCCEEEC
Confidence 0 011
Q ss_pred -----------cH-----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEE
Q 015587 181 -----------KF-----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 244 (404)
Q Consensus 181 -----------~F-----Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~ 244 (404)
.| |++++|++.|+|++|+.||+++||+||+|+|++.++ ++..++|.+|++.||++|++|++
T Consensus 429 ~~g~~~~p~~g~~giGveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~---~~~~~~a~~l~~~Lr~~gi~v~~ 505 (572)
T 2j3l_A 429 ENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKD---EYQTKLSQEVEAMMTEAGYEVLV 505 (572)
T ss_dssp TTSCEEECEEEEEEEEHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTC---HHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEeeeeeccccCHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCC---HHHHHHHHHHHHHHHhCCCeEEE
Confidence 01 999999999999999999999999999999997432 56889999999999999999999
Q ss_pred eCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 245 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 245 D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
|+++ .++|+||++|++.|+|++|+||++| ++|+|+||+|++++|..++++++++.++ +++
T Consensus 506 d~~~-~~~g~k~~~a~~~g~p~~iivG~~e-~~~~v~vk~~~~~~q~~v~~~~l~~~l~-~~~ 565 (572)
T 2j3l_A 506 DDRN-ERAGVKFADADLIGCPIRITVGKKA-VDGVVEVKIKRTGEMLEVRKEELESTLS-ILM 565 (572)
T ss_dssp ECSS-CCHHHHHHHHHHHCCSEEEEECGGG-GGTEEEEEETTTCCEEEEEHHHHHHHHH-HHC
T ss_pred eCCC-CCHhHHHHHHHhcCCCEEEEEcccc-cCCeEEEEEcCCCcEEEEeHHHHHHHHH-HHh
Confidence 9997 5999999999999999999999999 9999999999999999999999998887 654
No 12
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=7e-52 Score=441.96 Aligned_cols=286 Identities=16% Similarity=0.279 Sum_probs=253.5
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
++|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|.+ +|||+.|.++||+++|.++. +.++||||+
T Consensus 260 ~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~-sG~~d~~~~~mf~~~d~~~~---~~~~LrP~~ 335 (645)
T 1nyr_A 260 GAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKT-SGHWDHYQEDMFPPMQLDET---ESMVLRPMN 335 (645)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHH-HTHHHHCTTSSCCCEEETTT---EEEEECSSS
T ss_pred CCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhh-CCCccccccCcceeEecCCC---eEEEeCCCC
Confidence 68999999999999999999999999999999999999999999965 79999999999999887641 689999999
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC-CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
|++++++|+++++||++||+|+||+|+|||||.+ +.+||+|+|||+|.|+|+|+ +++++.+|+..+++++.++|+.||
T Consensus 336 ~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~-~~~~~~d~~~e~i~~~~~~l~~lG 414 (645)
T 1nyr_A 336 CPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFV-RPDQIKEEFKRVVNMIIDVYKDFG 414 (645)
T ss_dssp HHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEc-CHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999976 34799999999999999966 567777788889999999999998
Q ss_pred Ccce--EeeCCCC------------cC----------------------------------------cc--------cH-
Q 015587 166 AVPV--IKGKKSE------------LE----------------------------------------NS--------KF- 182 (404)
Q Consensus 166 ~ipv--~~g~~~~------------~e----------------------------------------kf--------~F- 182 (404)
.-++ .++.++. |+ +. ||
T Consensus 415 l~~~~~~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ygpki~~~~~d~lg~~~~~gtiq~D~~ 494 (645)
T 1nyr_A 415 FEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFL 494 (645)
T ss_dssp CCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEECCTTSCCEEEEEEEEESS
T ss_pred CCeEEEEEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecCCCCceeCCccceehhhhhCchhhcceEEeecc
Confidence 5344 2222210 00 00 11
Q ss_pred -------------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHH
Q 015587 183 -------------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTAT 231 (404)
Q Consensus 183 -------------------------------Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i 231 (404)
|++++|+++|+ ..||+|+||+||+|+|++. ++..++|.+|
T Consensus 495 l~~~~d~~Y~~~~g~~~~P~~ih~~~~GgieR~i~~liE~~~----~~~P~~lap~qv~vip~~~-----~~~~~~a~~i 565 (645)
T 1nyr_A 495 LPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETK----GAFPTWLAPKQVQIIPVNV-----DLHYDYARQL 565 (645)
T ss_dssp HHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHT----TCCCTTTCSSCEEEEESSH-----HHHHHHHHHH
T ss_pred cccccceEEECCCCCccCcEEEEeccCCcHHHHHHHHHHHhc----CCCCCCCCCceEEEEEccc-----HHHHHHHHHH
Confidence 99999999874 3899999999999999971 4688999999
Q ss_pred HHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 232 VEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 232 ~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
++.||++|++|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+||+|+++++..++++++++.|.++++
T Consensus 566 ~~~Lr~~Gi~v~~D~~~-~~~g~k~~~a~~~g~p~~iivG~~e~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~ 640 (645)
T 1nyr_A 566 QDELKSQGVRVSIDDRN-EKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIR 640 (645)
T ss_dssp HHHHHTTTCCEEECCSS-CCHHHHHHHHHHHTCSEEEEECHHHHHTTEEEEEETTSSCCCEEEHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEEccchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHh
Confidence 99999999999999997 5999999999999999999999999999999999999999999999999998877664
No 13
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=100.00 E-value=7.1e-51 Score=421.86 Aligned_cols=295 Identities=19% Similarity=0.236 Sum_probs=254.5
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHH--hcCceEeccCcccChhhHhhhcccccCcccceEEEEe-----------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIK--KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK----------- 70 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~--~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~----------- 70 (404)
|+.++|+++|+|.|.+++++|++++++.+. ++||++|.||+|.+.++| +.||||+.|.++||.+.+
T Consensus 25 ~~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~-~~SGh~~~f~d~m~~~~~~~~~~r~d~l~ 103 (505)
T 1ati_A 25 YGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVL-HYSGHEATFADPMVDNRITKKRYRLDHLL 103 (505)
T ss_dssp GTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHH-HHTSHHHHCEEEEEEC-------------
T ss_pred cCCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHH-HhcCChhhcCccceeccccccccchhhhh
Confidence 456799999999999999999999999998 999999999999999999 569999999999987421
Q ss_pred -------------------------------------------------cCC---------------------CCCCCce
Q 015587 71 -------------------------------------------------SGE---------------------SDLEVPI 80 (404)
Q Consensus 71 -------------------------------------------------~g~---------------------~~l~~~l 80 (404)
.|+ .+.++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fnlmf~t~~gpt~ee~~~~ 183 (505)
T 1ati_A 104 KEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLA 183 (505)
T ss_dssp -------------------------------------------------------CCCCEEEECBEEEECSSCCCGGGEE
T ss_pred hhhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhhhhhhcccCCccccccce
Confidence 010 0002568
Q ss_pred eccCCChhHHHHHHHhhhccC-CCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGH-RDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~-~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
+|||++|++++..|++++.|| ++||+++||+|+|||||.+|+.||+|+|||+|.|+| ++++++++.+++..++++|.+
T Consensus 184 ~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~-~f~~~e~~~~~~~~~i~~~~~ 262 (505)
T 1ati_A 184 YLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIE-YFVRPGEDEYWHRYWVEERLK 262 (505)
T ss_dssp EECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEE-EEECGGGHHHHHHHHHHHHHH
T ss_pred eecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEE-EEECHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999888899999999999999 588999999999999999999
Q ss_pred HHHHhCCcc---eEe-eC-------------------------------CC--------C---------------cCccc
Q 015587 160 IYEEFLAVP---VIK-GK-------------------------------KS--------E---------------LENSK 181 (404)
Q Consensus 160 ~~~~l~~ip---v~~-g~-------------------------------~~--------~---------------~ekf~ 181 (404)
+|+.||. | +.. +. .+ . ..+|+
T Consensus 263 i~~~LGl-~~~~v~~~~~~~~~~~~~~~~~~d~E~~~p~~~~e~~g~~~~~d~~L~~~~~~~~~~~~~~~~~~n~~~~~~ 341 (505)
T 1ati_A 263 WWQEMGL-SRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHSTQR 341 (505)
T ss_dssp HHHHTTC-CGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEEECTTHHHHHHCSSTTTTTCCSCCCCCSCCCSC
T ss_pred HHHHcCC-CeEEEEECCCChHhhhcccHHHHhHHhhcCCCCccchhhhcccceecchhhccccccceeeeecccccceeE
Confidence 9999974 3 110 00 00 0 01111
Q ss_pred H-----------------------HHHHHHHHHc--------CC-CCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHH
Q 015587 182 F-----------------------VQIGVMVMVH--------GD-DKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACT 229 (404)
Q Consensus 182 F-----------------------Rli~~Lie~~--------~d-~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~ 229 (404)
| |++++|++.| +| +.|+.||+++||+||+|+|++.++ ++..++|.
T Consensus 342 ~~y~d~~g~~~y~p~vig~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~Vip~~~~~---~~~~~~a~ 418 (505)
T 1ati_A 342 LAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNR---PEITEYAK 418 (505)
T ss_dssp CCEECSSSCCEECCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSC---HHHHHHHH
T ss_pred EEEEcCCCCeeecceEEEEeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCceEEEEEcCCcc---HHHHHHHH
Confidence 1 9999999986 55 678899999999999999997522 57889999
Q ss_pred HHHHHHhhCC-CEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccC---------CCeEEEEECCCCceeeechhhHH
Q 015587 230 ATVEKLCEAG-IRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLA---------NDQVRAVRRDNGAKIDLPRGSLV 299 (404)
Q Consensus 230 ~i~~~Lr~~G-irv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~---------~~~V~v~~r~~~~k~~v~~~el~ 299 (404)
+|++.||++| ++|.+|++ . ++|+||++|++.|+|++|+||++|++ +|+|+||+|++++|..|++++++
T Consensus 419 ~l~~~Lr~~G~i~v~~D~~-~-sig~k~~~ad~~g~p~~iivG~~el~~~~~~~~~~~g~V~vr~r~t~~q~~v~~~el~ 496 (505)
T 1ati_A 419 RLKARLLALGLGRVLYEDT-G-NIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELE 496 (505)
T ss_dssp HHHHHHHTTCSSCEEECCC-S-CHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTCCEEEEEHHHHH
T ss_pred HHHHHHhccCCEEEEECCC-C-CHHHHHHHHHHCCCCEEEEEChHHhhhccccccccCCEEEEEECCCCceEEEEHHHHH
Confidence 9999999999 99999998 4 99999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHH
Q 015587 300 ERVKELL 306 (404)
Q Consensus 300 ~~i~~~l 306 (404)
+.|.+++
T Consensus 497 ~~l~~~l 503 (505)
T 1ati_A 497 GFLRERL 503 (505)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887654
No 14
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=3.5e-50 Score=428.87 Aligned_cols=311 Identities=20% Similarity=0.237 Sum_probs=257.0
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHH-hcCceEeccCcccChhhHhhhcccccCcccceEEEEecCC---------
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGE--------- 73 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~-~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~--------- 73 (404)
|++++|++||+|.|+++|++|++++++.|. ..||++|.||+|.|.++| +.||||+.|.++|+.+.+.+.
T Consensus 87 y~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lw-k~SGH~~~f~d~m~~~~~~~e~yr~D~l~e 165 (693)
T 2zt5_A 87 YGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVL-KTSGHVDKFADFMVKDVKNGECFRADHLLK 165 (693)
T ss_dssp GTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHH-HHHTHHHHCEEEEEEBSSSCCEEEHHHHHH
T ss_pred cCCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHH-hhcCCcccccccceeeccCCceeeccHhHH
Confidence 567899999999999999999999999998 569999999999999999 579999999986665433220
Q ss_pred ---------------------------C-----------------------------------------CCCCceeccCC
Q 015587 74 ---------------------------S-----------------------------------------DLEVPIAIRPT 85 (404)
Q Consensus 74 ---------------------------~-----------------------------------------~l~~~l~LRPt 85 (404)
. .-++.++|||+
T Consensus 166 ~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~~LRPE 245 (693)
T 2zt5_A 166 AHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPE 245 (693)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEECSC
T ss_pred HHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcceeeccc
Confidence 0 01378999999
Q ss_pred ChhHHHHHHHhhhcc-CCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhH------------------
Q 015587 86 SETVMYPYFSKWIRG-HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEA------------------ 146 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s-~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a------------------ 146 (404)
.+.+++..|++++.+ |++||+++||||++||||.+|+.||+|+|||+|+|+|+|+...+..
T Consensus 246 taqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~ 325 (693)
T 2zt5_A 246 TAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAK 325 (693)
T ss_dssp SHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHH
T ss_pred cchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhh
Confidence 999999999999987 7899999999999999999999999999999999999987544321
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHhCCcc--eEe------------------------------
Q 015587 147 -----------------------DDEVLQILELYRRIYEEFLAVP--VIK------------------------------ 171 (404)
Q Consensus 147 -----------------------~~e~~~~~~~y~~~~~~l~~ip--v~~------------------------------ 171 (404)
.+++..++..+.++|..+|.-+ +..
T Consensus 326 ~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~g~~e~~ 405 (693)
T 2zt5_A 326 AQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIV 405 (693)
T ss_dssp HHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCSSEEEEEEEETTEEEEEE
T ss_pred hhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccchhhhhhehhhccCChHHHH
Confidence 1335556667778888887411 100
Q ss_pred e--CCCC-------------cC----------------------------------------------------------
Q 015587 172 G--KKSE-------------LE---------------------------------------------------------- 178 (404)
Q Consensus 172 g--~~~~-------------~e---------------------------------------------------------- 178 (404)
| .+++ ..
T Consensus 406 ~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~L~~~g~ 485 (693)
T 2zt5_A 406 GCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGE 485 (693)
T ss_dssp EEECCCSHHHHHHHHHHTCCCCEEEC------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhccchhhhcccCcccceeeeeecCChHHHHHHHHhcccHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 0 0000 00
Q ss_pred --------cc----------------------------cH---HHHHHHHHHcCC-----CC--CCCCCCCCCCceEEEE
Q 015587 179 --------NS----------------------------KF---VQIGVMVMVHGD-----DK--GLMLPPKVASVQVIVI 212 (404)
Q Consensus 179 --------kf----------------------------~F---Rli~~Lie~~~d-----~~--Gl~lP~~iap~qV~Ii 212 (404)
.| .| |++++|++.|.| +. |+.||+++||+||+|+
T Consensus 486 i~i~vdGt~Fei~~~~~~~~~y~~~~~Ggry~P~Vi~~s~GigRli~aLie~~~~~~~~~~~r~g~~~P~~lAP~qV~Vi 565 (693)
T 2zt5_A 486 FTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVL 565 (693)
T ss_dssp --------------------------CCEEECCEEEEEEEEHHHHHHHHHHHHEEECSSTTCCEEECCCTTTSSCSEEEE
T ss_pred EEEEECCEEEEecccccceeeEEeccCCcEecCcceeCeehHHHHHHHHHHHhccccccccccccccCCCCCCCCeEEEE
Confidence 01 01 999999998665 45 8899999999999999
Q ss_pred EecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECcccc--CCCeEEEEECCCCce
Q 015587 213 PVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDL--ANDQVRAVRRDNGAK 290 (404)
Q Consensus 213 pi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~--~~~~V~v~~r~~~~k 290 (404)
|++.+ ++..++|.+|++.||++|++|++|+++ .++|+||++|++.|+|++|+||++|+ ++|+|+||+|++++|
T Consensus 566 pl~~~----~~~~~~A~~l~~~Lr~~Gi~v~~D~~~-~sigkk~k~Ad~~G~p~~IiIG~~El~~~~g~Vtvr~r~t~eq 640 (693)
T 2zt5_A 566 PLSQN----QEFMPFVKELSEALTRHGVSHKVDDSS-GSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQ 640 (693)
T ss_dssp ESCCS----TTTHHHHHHHHHHHHHTTCCEEECCCC-SCHHHHHHHHHHTTCCEEEEECHHHHTSSSCEEEEEETTTCCE
T ss_pred EecCc----HHHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEEcchhhhccCCEEEEEECCCCce
Confidence 99742 357899999999999999999999987 59999999999999999999999999 999999999999999
Q ss_pred eeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhc
Q 015587 291 IDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALG 339 (404)
Q Consensus 291 ~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~ 339 (404)
..++++++++.|.++++. ..||+|+.+.+-
T Consensus 641 ~~v~l~el~~~l~~~l~~-------------------~~~w~~~~~~~~ 670 (693)
T 2zt5_A 641 IRAEISELPSIVQDLANG-------------------NITWADVEARYP 670 (693)
T ss_dssp EEEETTTHHHHHHHHHTT-------------------SSCHHHHHHHSC
T ss_pred EEEeHHHHHHHHHHHHhC-------------------cccHHHHHHhcc
Confidence 999999999888765542 588999999884
No 15
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=5.3e-48 Score=392.93 Aligned_cols=282 Identities=12% Similarity=0.127 Sum_probs=242.7
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccc-ccCcccceEEEEecCCCCCCCc
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDH-IEGFAPEVAWVTKSGESDLEVP 79 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~-~~~f~~e~~~~~~~g~~~l~~~ 79 (404)
|+++.+++|++||+|.++++|++|++.+++.|+++||++|.||+|++.++|.+++|| ++.+.++||+|+|++| +.
T Consensus 1 ~m~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g----~~ 76 (423)
T 1htt_A 1 AKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNG----DS 76 (423)
T ss_dssp --CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTS----CE
T ss_pred CCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCC----CE
Confidence 346889999999999999999999999999999999999999999999999876687 8889999999999988 99
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
++|||+.|+.++++++++ .+|+++|+|+||+|+|||+| +|+.| |+|||+|.|+|++|.+.+.||+|++.+ +.+
T Consensus 77 l~Lrpd~t~~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e-~p~~g--R~Ref~Q~d~e~~g~~~~~ad~e~i~~---~~~ 149 (423)
T 1htt_A 77 LTLRPEGTAGCVRAGIEH-GLLYNQEQRLWYIGPMFRHE-RPQKG--RYRQFHQLGCEVFGLQGPDIDAELIML---TAR 149 (423)
T ss_dssp EEECSCSHHHHHHHHHHH-TCSTTCCEEEEEEEEEECCC-CCCSS--CCSEEEEEEEEEESCCSHHHHHHHHHH---HHH
T ss_pred EEeCCCchHHHHHHHHhc-ccccCCCeEEEEEcCEecCC-CCCCC--ccceeEEeeEEEECCCCchhhHHHHHH---HHH
Confidence 999999999999999877 46789999999999999999 78889 999999999999999999999998654 468
Q ss_pred HHHHhCC-cce--EeeCC-------------------------C--------------C-----cCcc------------
Q 015587 160 IYEEFLA-VPV--IKGKK-------------------------S--------------E-----LENS------------ 180 (404)
Q Consensus 160 ~~~~l~~-ipv--~~g~~-------------------------~--------------~-----~ekf------------ 180 (404)
+|+.+|. -.+ .+|.. + + ...+
T Consensus 150 ~l~~lgl~~~~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~l~~~~~l~~~l~ 229 (423)
T 1htt_A 150 WWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLD 229 (423)
T ss_dssp HHHHHTCGGGCEEEEEECCCHHHHHHC---------------------------------------------------CC
T ss_pred HHHHCCCCCCcEEEEcCCCChhhHHHHHHHHHHHHHHHHhccCHHHHHHHHhchhHhhhcccHHHHHHHhcchHHHhhhh
Confidence 8888874 122 11110 0 0 0000
Q ss_pred -----------------------c----------------------------------------H---------------
Q 015587 181 -----------------------K----------------------------------------F--------------- 182 (404)
Q Consensus 181 -----------------------~----------------------------------------F--------------- 182 (404)
| |
T Consensus 230 ~~~~~~l~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~fgg~~~pavGf~igve 309 (423)
T 1htt_A 230 EESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLE 309 (423)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCEECTTCCCSSTTCCSEEEEEECC----CCEEEEEEECTTHHHHTTSCCCCEEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEccccccchHHHcCceEEEEeCCCCCcCCcCCCccHHHHHHHhCCCCCCeEEEEecHH
Confidence 0 0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhC--CCEEEEeCCCCCChhHHHHHHH
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEA--GIRANSDFRDNYSPGWKYSHWE 260 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~--Girv~~D~~~~~s~g~k~~~ae 260 (404)
|++++|.+. |. +||+.+|+||+|+|++. +..++|.++++.||++ |++|++|+++ .++|+||++|+
T Consensus 310 Rl~~~l~e~-----~~-~~~~~~p~~v~i~~~~~------~~~~~a~~l~~~Lr~~~~Gi~v~~d~~~-~~~~~~~~~a~ 376 (423)
T 1htt_A 310 RLVLLVQAV-----NP-EFKADPVVDIYLVASGA------DTQSAAMALAERLRDELPGVKLMTNHGG-GNFKKQFARAD 376 (423)
T ss_dssp HHHHHHHHH-----ST-TCCCCCSCSEEEEECST------THHHHHHHHHHHHHHHSTTCCEEECCSC-CCHHHHHHHHH
T ss_pred HHHHHHHhc-----Cc-CCCCCCCCcEEEEEcCH------HHHHHHHHHHHHHHcCCCCcEEEEeCCC-CCHHHHHHHHH
Confidence 888888774 33 45556999999999873 4678999999999999 9999999987 59999999999
Q ss_pred HcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 261 MKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 261 ~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
+.|+|++|+||++|+++|+|+||+|+++++..++++++++.+++++
T Consensus 377 ~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 377 KWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 422 (423)
T ss_dssp HHTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred HcCCCEEEEECchhhhcCeEEEEECCCCCceEEcHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999887664
No 16
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=4.8e-47 Score=385.70 Aligned_cols=280 Identities=15% Similarity=0.127 Sum_probs=240.1
Q ss_pred ccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccc-ccCcccceEEEEecCCCCCCCcee
Q 015587 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDH-IEGFAPEVAWVTKSGESDLEVPIA 81 (404)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~-~~~f~~e~~~~~~~g~~~l~~~l~ 81 (404)
.+..++|++||+|.++++|++|++.+++.|+++||++|.||+|++.++|.+++|| |+.+.++||+|+|++| +.++
T Consensus 2 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g----~~l~ 77 (421)
T 1h4v_B 2 TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGG----RSLT 77 (421)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCC----CEEe
Confidence 4688999999999999999999999999999999999999999999999876687 8999999999999988 9999
Q ss_pred ccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 82 IRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
|||+.|+.++++++.+..+++++|+|+||+|+|||+| +|+.| |+|||+|.|+|+||.+.+.||+|++.++ .++|
T Consensus 78 Lrpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e-~p~~g--R~REf~Q~g~e~~g~~~~~ad~e~i~~~---~~~l 151 (421)
T 1h4v_B 78 LRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAE-RPQKG--RYRQFHQVNYEALGSENPILDAEAVVLL---YECL 151 (421)
T ss_pred eCCcchHHHHHHHHhccccccCCCeEEEEecCeecCC-CCCCC--CcccEEEccEEEECCCChhhhHHHHHHH---HHHH
Confidence 9999999999999988778889999999999999999 77889 9999999999999999999999987654 4666
Q ss_pred HHhCCc--ceEeeC-------------------------------------------CC----------CcC--------
Q 015587 162 EEFLAV--PVIKGK-------------------------------------------KS----------ELE-------- 178 (404)
Q Consensus 162 ~~l~~i--pv~~g~-------------------------------------------~~----------~~e-------- 178 (404)
+.+|.- .+.+|. +. ...
T Consensus 152 ~~lgl~~~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 231 (421)
T 1h4v_B 152 KELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGE 231 (421)
T ss_pred HHcCCCceEEEEcCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcchHhhhcccHHHHHHHHhcChHHHHHHhhH
Confidence 665521 011110 00 000
Q ss_pred ------------------cc------------------------------------------cH---------------H
Q 015587 179 ------------------NS------------------------------------------KF---------------V 183 (404)
Q Consensus 179 ------------------kf------------------------------------------~F---------------R 183 (404)
.+ .| |
T Consensus 232 ~~~~~l~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~~fgg~~~pa~Gf~igieR 311 (421)
T 1h4v_B 232 EARAHLKEVERHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVER 311 (421)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEecccccchhhhcCeEEEEEecCCCCcCccccCCcHHHHHHHhCCCCCCeEEEeecHHH
Confidence 00 01 7
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcC
Q 015587 184 QIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKG 263 (404)
Q Consensus 184 li~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~G 263 (404)
++++|.+. |. +||+.+|+||+|+|++ ++..++|.++++.||++ ++|++|+++ .++|+||++|++.|
T Consensus 312 l~~~l~e~-----~~-~~~~~~p~~v~i~~~~------~~~~~~a~~l~~~Lr~~-i~v~~d~~~-~~~~~~~~~a~~~g 377 (421)
T 1h4v_B 312 VALALEAE-----GF-GLPEEKGPDLYLIPLT------EEAVAEAFYLAEALRPR-LRAEYALAP-RKPAKGLEEALKRG 377 (421)
T ss_pred HHHHHHhc-----Cc-CCCCCCCCeEEEEECC------hHHHHHHHHHHHHHHhc-CEEEEecCC-CCHHHHHHHHHhCC
Confidence 77777663 33 4566799999999987 35778999999999999 999999987 59999999999999
Q ss_pred CCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 264 VPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 264 vP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
+|++|+||++|+++|+|+||+|+++++..++++++++.++++|
T Consensus 378 ~p~~iivG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 378 AAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420 (421)
T ss_pred CCEEEEECchHhhcCcEEEEECCCCCceEECHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999887664
No 17
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=1.2e-46 Score=387.22 Aligned_cols=280 Identities=15% Similarity=0.169 Sum_probs=238.7
Q ss_pred CccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccc-ccCcccceEEEEecC-CCCCCCc
Q 015587 2 IEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDH-IEGFAPEVAWVTKSG-ESDLEVP 79 (404)
Q Consensus 2 ~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~-~~~f~~e~~~~~~~g-~~~l~~~ 79 (404)
..+.+++|++||+|.++++|+.|++.+++.|+++||++|.||+|++.++|.+..|| ++.+.++||.|.|++ | +.
T Consensus 30 ~~~~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g----~~ 105 (467)
T 4e51_A 30 EKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNG----EN 105 (467)
T ss_dssp CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTC----CE
T ss_pred cCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCC----CE
Confidence 35788999999999999999999999999999999999999999999999887698 788999999999998 7 89
Q ss_pred eeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHH
Q 015587 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 159 (404)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~ 159 (404)
++|||+.|+.++++++.+..+| ++|+|+||+|+|||+| +|+.| |+|||+|.|+|+|+.+.+.+|+|++.++ .+
T Consensus 106 l~LRPd~t~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E-~~~~g--R~ReF~Q~d~ei~g~~~~~adaEvi~l~---~~ 178 (467)
T 4e51_A 106 LTLRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYRQFHQVGVEALGFAGPDADAEIVMMC---QR 178 (467)
T ss_dssp EEECSCSHHHHHHHHHHTTTTT-TSCEEEEEEEEEECCC-CC-----CCSEEEEEEEEEETCCCSHHHHHHHHHH---HH
T ss_pred EEeCcccHHHHHHHHHHccccc-CCCEEEEEEccEEccC-CCCCC--CcCceEEEEEEEEeCCChHHHHHHHHHH---HH
Confidence 9999999999999999988888 6999999999999999 67888 9999999999999999999998887766 58
Q ss_pred HHHHhCCcce--EeeCCC------------------------------------------------------Cc------
Q 015587 160 IYEEFLAVPV--IKGKKS------------------------------------------------------EL------ 177 (404)
Q Consensus 160 ~~~~l~~ipv--~~g~~~------------------------------------------------------~~------ 177 (404)
+|+.+|.-.+ .+|... ..
T Consensus 179 ~l~~lGl~~~~i~in~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~ 258 (467)
T 4e51_A 179 LWEDLGLTGIKLEINSLGLAEERAAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGD 258 (467)
T ss_dssp HHHHHTCCCEEEEEEECCCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCH
T ss_pred HHHHcCCCceEEEEeCCCchhhhHHHHHHHHHHHHHHHhccCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhH
Confidence 8888874222 222100 00
Q ss_pred ---Ccc------------------------c--------------------------------H---------------H
Q 015587 178 ---ENS------------------------K--------------------------------F---------------V 183 (404)
Q Consensus 178 ---ekf------------------------~--------------------------------F---------------R 183 (404)
+.+ + | |
T Consensus 259 ~~~~~l~~l~~~L~~~gi~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~GGRYD~Lv~~~g~~~~PavGfa~gleR 338 (467)
T 4e51_A 259 VSRAHFEGLQRLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWAMGIER 338 (467)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEECTTCCCSCTTCCSEEEEEEECC----CEEEEEEECTHHHHHTTSSCCCEEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHcCCeEEEcCccccCccccCCeEEEEEECCCCCcceecCCCcHHHHHHHhCCCCCCceeehHHHHH
Confidence 000 0 0 9
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCC----CCCChhHHHHHH
Q 015587 184 QIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR----DNYSPGWKYSHW 259 (404)
Q Consensus 184 li~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~----~~~s~g~k~~~a 259 (404)
++.+|.+. |. +|. .+|.||+|+|++ ++...+|.++++.||++|++|++|.+ + .++++|+++|
T Consensus 339 l~~~l~~~-----~~-~~~-~~p~~V~Vip~~------~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~-~sl~kq~~~A 404 (467)
T 4e51_A 339 ILELLKEE-----HL-VPE-QEGVDVYVVHQG------DAAREQAFIVAERLRDTGLDVILHCSADGAG-ASFKSQMKRA 404 (467)
T ss_dssp HHHHHHHT-----TC-CCC-CCCCSEEEEECS------HHHHHHHHHHHHHHHHTTCCEEECCCTTSSC-CCHHHHHHHH
T ss_pred HHHHHHhc-----CC-ccc-CCCCeEEEEEcC------hHHHHHHHHHHHHHHHcCCeEEEEccccccc-CCHHHHHHHH
Confidence 99888873 32 444 789999999987 46788999999999999999999998 5 6999999999
Q ss_pred HHcCCCEEEEECccccCCCeEEEEECCC-C------ceeeechhhHHHHHHHHH
Q 015587 260 EMKGVPLRIEIGPKDLANDQVRAVRRDN-G------AKIDLPRGSLVERVKELL 306 (404)
Q Consensus 260 e~~GvP~~iiIG~~E~~~~~V~v~~r~~-~------~k~~v~~~el~~~i~~~l 306 (404)
++.|+|++|+||++|+++|+|+||+|++ + ++..++++++++.|++.+
T Consensus 405 ~~~g~~~~iiiG~~E~~~g~V~vk~~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 405 DASGAAFAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp HHTTCSEEEEECHHHHHHTEEEEEEC---------CCCEEEEGGGHHHHHHHHH
T ss_pred HHcCCCEEEEECcchhhCCeEEEEECCCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 9999999999999999999999999999 8 999999999999887766
No 18
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=1e-46 Score=383.03 Aligned_cols=277 Identities=17% Similarity=0.238 Sum_probs=227.1
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhc-ccccCcccceEEEEecCCCCCCCceec
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEK-DHIEGFAPEVAWVTKSGESDLEVPIAI 82 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~-g~~~~f~~e~~~~~~~g~~~l~~~l~L 82 (404)
+..++|+++|+|.|+++|++|++++++.|.++||++|.||+|++.++|.+.. +|++.|.++||+|+|++| +.++|
T Consensus 2 ~~~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g----~~~~L 77 (420)
T 1qe0_A 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGD----RSITL 77 (420)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHH----CCEEE
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCC----CEEEe
Confidence 5789999999999999999999999999999999999999999999997643 799999999999999887 89999
Q ss_pred cCCChhHHHHHHHhhhccC-CCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGH-RDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~-~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
|||+|++++++++++..|| ++||+|+||+|+|||+| +|+.| |+|||+|.|+|+||.+.+.+|+|++.++ .++|
T Consensus 78 rp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E-~~~~g--R~reF~q~~~e~~~~~~~~~d~e~i~~~---~~~l 151 (420)
T 1qe0_A 78 RPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYE-RKQKG--RYRQFNQFGVEAIGAENPSVDAEVLAMV---MHIY 151 (420)
T ss_dssp CSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC----------CCEEEEEEEEEESCCCHHHHHHHHHHH---HHHH
T ss_pred CCCChHHHHHHHHhccccccCCCCeEEEEecCEeecC-CCcCC--CcccEEEeeEEEECCCCchhHHHHHHHH---HHHH
Confidence 9999999999999998898 89999999999999999 67877 9999999999999999999998887766 4677
Q ss_pred HHhCCcce--EeeC------------------------------------------------CCCcC-------------
Q 015587 162 EEFLAVPV--IKGK------------------------------------------------KSELE------------- 178 (404)
Q Consensus 162 ~~l~~ipv--~~g~------------------------------------------------~~~~e------------- 178 (404)
+.+|.-.+ .+|. ..-++
T Consensus 152 ~~lgl~~~~i~l~~~g~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~~ 231 (420)
T 1qe0_A 152 QSFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEES 231 (420)
T ss_dssp HHTTCCCEEEEEEECCCHHHHHHHHHHHHHHHGGGGGGSCHHHHHTTTTCGGGGC------------CCCCGGGCCCTTH
T ss_pred HHcCCCceEEEEcccCchhhHHHHHHHHHHHHHHHHhhhCHHHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHHH
Confidence 77663111 1110 00000
Q ss_pred --------------------------------------------------------cc-----cH---------------
Q 015587 179 --------------------------------------------------------NS-----KF--------------- 182 (404)
Q Consensus 179 --------------------------------------------------------kf-----~F--------------- 182 (404)
+| .|
T Consensus 232 ~~~l~~l~~~l~~~gi~~~~d~~l~rg~~yYtg~vfe~~~~~~~~~g~~~~i~~GgRYd~l~~~~g~~~~P~vg~~igve 311 (420)
T 1qe0_A 232 KAYYEQVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFALSIE 311 (420)
T ss_dssp HHHHHHHHHHHHHHTCCCEECTTCCCCCTTEEEEEEEEEEECTTSTTSEEEEEEEEEEESHHHHTTCCCCEEEEEEEEHH
T ss_pred HHHHHHHHHHHHHcCCeEEECcccccchhhhcCeEEEEEEcCCCCCCCcCccccCccHHHHHHHhCCCCCCEEEEEecHH
Confidence 00 01
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHc
Q 015587 183 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMK 262 (404)
Q Consensus 183 Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~ 262 (404)
|++++| +. .|+.||+ ++|+||+|+|++ ++..++|.++++.||++|++|++|+++ .++|+|+++|++.
T Consensus 312 Rl~~~l-e~----~~~~~p~-~~p~~v~i~~~~------~~~~~~a~~l~~~Lr~~Gi~v~~d~~~-~~~~~~~~~a~~~ 378 (420)
T 1qe0_A 312 RLLLAL-EE----EGIELDI-EENLDLFIVTMG------DQADRYAVKLLNHLRHNGIKADKDYLQ-RKIKGQMKQADRL 378 (420)
T ss_dssp HHHHHH-HH----TTCCCCC-CCCCSEEEEECH------HHHHHHHHHHHHHHHTTTCCEEECCSC-CCHHHHHHHHHHT
T ss_pred HHHHHH-Hh----cCCCCCC-CCCCeEEEEEeC------HHHHHHHHHHHHHHHHCCCEEEEecCC-CCHHHHHHHHHHc
Confidence 999887 43 4678888 899999999986 357789999999999999999999987 5999999999999
Q ss_pred CCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHH
Q 015587 263 GVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 303 (404)
Q Consensus 263 GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~ 303 (404)
|+|++|+||++|+++|+|+||+|+++++..++++++++.++
T Consensus 379 g~p~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~~l~~~l~ 419 (420)
T 1qe0_A 379 GAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFK 419 (420)
T ss_dssp TCSEEEEECHHHHHHTCEEEEETTTCCEEEECTTHHHHHHH
T ss_pred CCCEEEEECcchhhcCeEEEEECCCCCeEEEcHHHHHHHHh
Confidence 99999999999999999999999999999999999988764
No 19
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=100.00 E-value=2.7e-48 Score=397.02 Aligned_cols=297 Identities=14% Similarity=0.068 Sum_probs=236.1
Q ss_pred CCCccE-EeCchHHHHHHHHHHHHHHHH--HhcCceEeccCcccChhhHhhh-ccc---ccCcccc----------eEEE
Q 015587 6 DISGCY-IMRPWAISIWETMQKFFDAEI--KKMKIQNCYFPLFVSPTVLQKE-KDH---IEGFAPE----------VAWV 68 (404)
Q Consensus 6 ~~~G~~-~~~P~g~~i~~~i~~~~~~~~--~~~G~~~i~~P~l~~~~l~~k~-~g~---~~~f~~e----------~~~~ 68 (404)
+++|++ +|+|.|+.||++|++++++.+ .+.|+++|+||++.|.++|.++ +|| ++.+.++ |+..
T Consensus 49 ~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~ 128 (454)
T 1g5h_A 49 LLSGCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAF 128 (454)
T ss_dssp HHHCCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHH
T ss_pred CCCcceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHH
Confidence 467988 999999999999999888874 5899999999999999999652 266 7777655 2211
Q ss_pred EecCCCCCCCceeccCCChhHHHHHHHhhhccCC-CCCeEEEeeeceee---cCCCCCCCccccceeEEeceeeecCChh
Q 015587 69 TKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVR---WEFSNPTPFIRSREFLWQEGHTAFATKS 144 (404)
Q Consensus 69 ~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s~~-~lPlk~~q~~~vfR---~E~~~~~gllR~REF~q~e~~~~~~~~~ 144 (404)
.. +.++++++|||+++++++.+|+++++||+ +||++++|||+||| +|.+|..||+|+|||+|+|+|+ +++++
T Consensus 129 ~~---~~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~pe 204 (454)
T 1g5h_A 129 LE---NLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTR 204 (454)
T ss_dssp HH---HHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHH
T ss_pred HH---hhcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeCHh
Confidence 00 00136899999999999999999999998 99999999999999 5998877999999999999998 57899
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcc--eEe--------------------------e--CCC--------CcCccc-----
Q 015587 145 EADDEVLQILELYRRIYEEFLAVP--VIK--------------------------G--KKS--------ELENSK----- 181 (404)
Q Consensus 145 ~a~~e~~~~~~~y~~~~~~l~~ip--v~~--------------------------g--~~~--------~~ekf~----- 181 (404)
++.+++..+++.+..+|++||.-| +.. | .++ ..++|+
T Consensus 205 ~~~e~~~~~~~~~~~~~~~lgi~~~~~r~~~~~~~~a~~~~~ie~~~p~g~~e~~g~~~~td~~l~~~~~~s~~~l~y~d 284 (454)
T 1g5h_A 205 TSSQWLDFWLRHRLLWWRKFAMSPSNFSSADCQDELGRKGSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNVSTIQGRD 284 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSGGGEEEEEEECTTSCEEEEEEEEETTEEEEEEEEEEEESHHHHHHSTTCGGGSCEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeEEecCCHHHHHhcCCCcEEecCCCceEEEEecCCCHHHHHhccCCceeeEEEEC
Confidence 999999999999999999987422 210 0 000 011120
Q ss_pred -------------H---HHHHHHHHHcCC----------C---CCCCCCCCCCCceEEEE-EecCCCCChhhHHHHHHHH
Q 015587 182 -------------F---VQIGVMVMVHGD----------D---KGLMLPPKVASVQVIVI-PVPYKDADTQGIFDACTAT 231 (404)
Q Consensus 182 -------------F---Rli~~Lie~~~d----------~---~Gl~lP~~iap~qV~Ii-pi~~~~~~~~~~~~~a~~i 231 (404)
+ |+++++++.+.+ | .|++||+++||+||+|+ |++. .++..++|.+|
T Consensus 285 ~~~~~~P~vi~~s~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~----~e~~~~~A~~l 360 (454)
T 1g5h_A 285 GRKNVVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGP----TVELRQVCQGL 360 (454)
T ss_dssp TTEEECCEEEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSC----HHHHHHHHHHH
T ss_pred CCCcEeeEEEeCcccHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCC----cHHHHHHHHHH
Confidence 0 998777665522 2 46899999999999999 5431 15688999999
Q ss_pred HHHHhhCCCEEE--EeCC-CCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 232 VEKLCEAGIRAN--SDFR-DNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 232 ~~~Lr~~Girv~--~D~~-~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
++.|+++|++|+ +|++ + .++|+||++|++.|+|++|+||++|+++|+|+||+|++++|..++++++++.|.++++.
T Consensus 361 ~~~Lr~~Gi~v~~~~Ddr~~-~sigkk~r~Ad~~GiP~~IiVG~~Ele~g~VtvR~r~t~eq~~v~l~el~~~l~~~l~~ 439 (454)
T 1g5h_A 361 LNELLENGISVWPGYSETVH-SSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLAS 439 (454)
T ss_dssp HHHHHHTTCCEEEGGGSCCC-SCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEecCCCC-CCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHhc
Confidence 999999999996 8987 5 59999999999999999999999999999999999999999999999999999988876
Q ss_pred HHH
Q 015587 309 VQE 311 (404)
Q Consensus 309 ~~~ 311 (404)
+|.
T Consensus 440 ~~~ 442 (454)
T 1g5h_A 440 ASN 442 (454)
T ss_dssp HHH
T ss_pred cch
Confidence 653
No 20
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-46 Score=377.65 Aligned_cols=278 Identities=13% Similarity=0.037 Sum_probs=226.7
Q ss_pred CCCCccE-EeCchHHHHHHHHHHHHHHHHH-hcC-ceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCcee
Q 015587 5 YDISGCY-IMRPWAISIWETMQKFFDAEIK-KMK-IQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIA 81 (404)
Q Consensus 5 ~~~~G~~-~~~P~g~~i~~~i~~~~~~~~~-~~G-~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~ 81 (404)
+.+.|++ +|+|.|+.|+++|++.+++.+. +.| +.+|+||+. ++| +.||||+.|. ++
T Consensus 90 ~~~~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~---~~~-~~SGH~d~~~-----------------~~ 148 (459)
T 3ikl_A 90 SLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHH---KPG-PLLPGDSAFR-----------------GG 148 (459)
T ss_dssp HHHTTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCSB---CCS-CCCSSCSCCT-----------------TB
T ss_pred CCccccccccCCcHHHHHHHHHHHHHHHHhhccCceEeeccccc---ccc-ccCcchhhhc-----------------ce
Confidence 4577888 9999999999999996655554 355 778999994 446 6799999986 88
Q ss_pred ccCCChhHHHHHHHhhhccCC-CCCeEEEeeeceeecCC---CCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHH
Q 015587 82 IRPTSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVRWEF---SNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 157 (404)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~-~lPlk~~q~~~vfR~E~---~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y 157 (404)
|||++++++...|++++.||+ +||+++.|+|+|||+|. .+.+||+|+|||+|.|+|. +++++++.+++..+++..
T Consensus 149 LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 149 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHR 227 (459)
T ss_dssp -CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred ECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999999994 5677999999999999997 789999999999999888
Q ss_pred HHHHHHhCCcc---eEeeCC--C-Cc--------------------------------------------Ccc-------
Q 015587 158 RRIYEEFLAVP---VIKGKK--S-EL--------------------------------------------ENS------- 180 (404)
Q Consensus 158 ~~~~~~l~~ip---v~~g~~--~-~~--------------------------------------------ekf------- 180 (404)
..+|..|| +| +..... . .. ++|
T Consensus 228 ~~~~~~LG-i~~~~~r~~~~~~eeA~~~~DiE~~~p~G~~E~~g~sn~tDfqL~~~~~~~~~~~~~~dg~~k~~P~vi~~ 306 (459)
T 3ikl_A 228 LQWWRKFA-MSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSV 306 (459)
T ss_dssp HHHHHHHC-SSGGGEEEEEECCSSSSCEEEEEEECSSCEEEEEEEEEEETHHHHHHSCSCSSSSCCBSSSCBCCCEEEEE
T ss_pred HHHHHHhC-CChhhEEEeecCchHHHhhcCeEEEcCCceEEEeeeeccchhhhhccccccCceeEccCCCeeeeeEEEEe
Confidence 89999997 44 211000 0 00 000
Q ss_pred cH---HHHHHHHHHcCCCCC-------------CCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEE-
Q 015587 181 KF---VQIGVMVMVHGDDKG-------------LMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN- 243 (404)
Q Consensus 181 ~F---Rli~~Lie~~~d~~G-------------l~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~- 243 (404)
.+ |++.++++.+-|+.| ++||+++||+||+|+ +..++ .+++.++|.+|++.|+++||+|+
T Consensus 307 s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Ii-i~~~~--~e~~~~~A~~L~~~Lr~~GIrV~~ 383 (459)
T 3ikl_A 307 NGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALD-VGRGP--TLELRQVCQGLFNELLENGISVWP 383 (459)
T ss_dssp EEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEE-ESSCC--STTHHHHHHHHHHHHHHTSCCEEC
T ss_pred cccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEE-eCCCC--CHHHHHHHHHHHHHHHHCCCeEEE
Confidence 00 999888888777665 999999999999999 65321 25689999999999999999999
Q ss_pred -EeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015587 244 -SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 308 (404)
Q Consensus 244 -~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~~ 308 (404)
+|++.+.++|+||++|+++|||++|+||++|+++|+|+||+|++++|..|+++++++.|.++++.
T Consensus 384 d~Ddr~~~siGkK~r~Ad~iGiPy~IiVG~kEle~g~VtVR~Rdtgeq~~v~ldeli~~l~~~i~~ 449 (459)
T 3ikl_A 384 GYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISS 449 (459)
T ss_dssp GGGSSSCCTTHHHHHHHGGGTCSEEEEECTTSTTSSEEEEEETTTCCCCCEETTHHHHHHHHHHHH
T ss_pred eecCCcCCCHHHHHHHHHHcCCCEEEEECchhhhCCEEEEEECCCCceEEEEHHHHHHHHHHHHhh
Confidence 88872259999999999999999999999999999999999999999999999999999887765
No 21
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=9.8e-46 Score=377.61 Aligned_cols=276 Identities=14% Similarity=0.129 Sum_probs=238.1
Q ss_pred ccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceec
Q 015587 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAI 82 (404)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~L 82 (404)
++..++|++||+|.++++|++|++.+++.|+++||++|.||+|++.++|.+++|| .+.++||+|+|++| +.++|
T Consensus 5 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~~D~~g----~~l~L 78 (434)
T 1wu7_A 5 QIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSFVDKGG----REVTL 78 (434)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEEECTTS----CEEEE
T ss_pred ccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCC--ccccceEEEECCCC----CEEEe
Confidence 4678999999999999999999999999999999999999999999999887888 68999999999988 99999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~ 162 (404)
|||.|+.++++++.+ +++ ++|+|+||+|+|||+| +|+.| |+|||+|.|+|+||.+.+.||+|++.+ +.++|+
T Consensus 79 rPd~t~~~aR~~~~~-~~~-~lP~rl~~~g~vfR~e-rp~~g--R~REF~Q~d~ei~g~~~~~ad~E~i~~---~~~~l~ 150 (434)
T 1wu7_A 79 IPEATPSTVRMVTSR-KDL-QRPLRWYSFPKVWRYE-EPQAG--RYREHYQFNADIFGSDSPEADAEVIAL---ASSILD 150 (434)
T ss_dssp CSCSHHHHHHHHTTC-TTC-CSSEEEEECCEEECCC-CSCSS--CCSEEEEEEEEEESCCSHHHHHHHHHH---HHHHHH
T ss_pred CCCChHHHHHHHHhc-CCC-CCCeEEEEEcCeecCC-CCCCC--CccceEEeeEEEEcCCChHhhHHHHHH---HHHHHH
Confidence 999999999999988 777 8999999999999999 78889 999999999999999999999987654 467888
Q ss_pred HhCCcc-eE--ee-----------C-CCC-------------------------------------------cC------
Q 015587 163 EFLAVP-VI--KG-----------K-KSE-------------------------------------------LE------ 178 (404)
Q Consensus 163 ~l~~ip-v~--~g-----------~-~~~-------------------------------------------~e------ 178 (404)
.+|.-. +. +| . ..+ ..
T Consensus 151 ~lgl~~~~~i~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 230 (434)
T 1wu7_A 151 RLGLQDIYEIRINSRKIMEEIIGGMTSSDPFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMAR 230 (434)
T ss_dssp HTTTTTSEEEEEEEHHHHHHHHHTTCSSCHHHHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHHHHH
T ss_pred HcCCCCceEEEECChhhHHHHHHHhCcHhHHHHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 776411 31 11 1 111 00
Q ss_pred ------------------------c-c-----------------------------------------cH----------
Q 015587 179 ------------------------N-S-----------------------------------------KF---------- 182 (404)
Q Consensus 179 ------------------------k-f-----------------------------------------~F---------- 182 (404)
. + .|
T Consensus 231 ~~~~~~~~~~~l~~~~~~l~~~g~~~i~~D~~l~rgldYYtg~vFe~~~~~g~~~~v~~GGRYD~li~~fgg~~~pa~Gf 310 (434)
T 1wu7_A 231 ITGKSSEEIARMAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVPAVGF 310 (434)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTTCCCCEECTTCCTTTTTCSSEEEEEEETTSSCSCSSEEEECTTHHHHHHSCCCCEEEE
T ss_pred HHhhHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCccccCCeEEEEEECCCCcCeeeecccHHHHHHHhCCCCCCeEEE
Confidence 0 1 00
Q ss_pred -----HHHHHHHHHcCCCCCCCC-CCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHH
Q 015587 183 -----VQIGVMVMVHGDDKGLML-PPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKY 256 (404)
Q Consensus 183 -----Rli~~Lie~~~d~~Gl~l-P~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~ 256 (404)
|++++|.+. | .| |+ +|+||+|+|++. +..++|.++++.||++|++|++|+++ .++|+||
T Consensus 311 ~igveRl~~~l~e~-----~-~~~p~--~p~~v~v~~~~~------~~~~~a~~l~~~Lr~~Gi~v~~d~~~-~~~~~~~ 375 (434)
T 1wu7_A 311 GMGDAVISLLLKRE-----N-VQIPR--EKKSVYICRVGK------INSSIMNEYSRKLRERGMNVTVEIME-RGLSAQL 375 (434)
T ss_dssp EEEHHHHHHHHHHT-----T-CCCCC--SSCEEEEEEESS------CCHHHHHHHHHHHHTTTCEEEECCSC-CCHHHHH
T ss_pred EEcHHHHHHHHHhc-----C-CccCC--CCCcEEEEEcCh------HHHHHHHHHHHHHHHCCCeEEEecCC-CCHHHHH
Confidence 776666653 2 45 65 799999999973 35678999999999999999999987 5999999
Q ss_pred HHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 257 SHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 257 ~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
++|++.|+|++|+||++|+++|+|+|++|.++++..++++++++.++++|.
T Consensus 376 ~~a~~~g~~~~iiiG~~e~~~g~v~vk~~~~~~~~~v~~~el~~~l~~~~~ 426 (434)
T 1wu7_A 376 KYASAIGADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQAT 426 (434)
T ss_dssp HHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCCEEEEEGGGHHHHHHHCCC
T ss_pred HHHHHCCCCEEEEECchhhhcCeEEEEECCCCCeEEEcHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999998877664
No 22
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=4.3e-44 Score=373.04 Aligned_cols=278 Identities=18% Similarity=0.173 Sum_probs=220.9
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceecc
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LR 83 (404)
..+++||+||+|.++.+|++|++.+++.|+++||++|.||+|++.++|.++.|+. .++||.|.|++| +.++||
T Consensus 67 l~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~---~~~my~f~D~~g----~~l~LR 139 (517)
T 4g85_A 67 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED---SKLIYDLKDQGG----ELLSLR 139 (517)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC---------CSCBBCCTTS----CCEEEC
T ss_pred eeCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcC---cceeEEEECCCC----CEEEeC
Confidence 4789999999999999999999999999999999999999999999998766653 578999999988 999999
Q ss_pred CCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC--CCCccccceeEEeceeeecCC-hhhHHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN--PTPFIRSREFLWQEGHTAFAT-KSEADDEVLQILELYRRI 160 (404)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~--~~gllR~REF~q~e~~~~~~~-~~~a~~e~~~~~~~y~~~ 160 (404)
|+.|++++++++. ++.+|+|+||+|+||||| +| ++| |+|||+|.|+|++|.. +..+|+|++.++ .++
T Consensus 140 Pd~T~~~aR~~~~----~~~~p~k~yyig~vfR~E-rp~~~~G--R~ReF~Q~g~ei~G~~~~~~aDaEvi~l~---~~~ 209 (517)
T 4g85_A 140 YDLTVPFARYLAM----NKLTNIKRYHIAKVYRRD-NPAMTRG--RYREFYQCDFDIAGNFDPMIPDAECLKIM---CEI 209 (517)
T ss_dssp SCSHHHHHHHHHH----TTCSCEEEEEEEEEECCC-C---------CCEEEEEEEEEESCCCTTHHHHHHHHHH---HHH
T ss_pred CcCcHHHHHHHHh----CCCCCceeEEEeceEecc-CcccccC--ccceeeeeceeccCCccchHHHHHHHHHH---HHH
Confidence 9999999998764 467899999999999999 66 558 9999999999999864 456799987776 477
Q ss_pred HHHhCCcce--EeeC-----------------------------CCCcC-------------------------------
Q 015587 161 YEEFLAVPV--IKGK-----------------------------KSELE------------------------------- 178 (404)
Q Consensus 161 ~~~l~~ipv--~~g~-----------------------------~~~~e------------------------------- 178 (404)
++.+|.-.+ .+|. +..++
T Consensus 210 l~~lgl~~~~i~in~~~~l~~~~~~~~~~~~~~~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~ 289 (517)
T 4g85_A 210 LSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVS 289 (517)
T ss_dssp HHHHCCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHH
T ss_pred HHhhcCCcccccccchhhHHHHHHhhcchHHHHHHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCch
Confidence 777764221 1110 00000
Q ss_pred --------------------------------------cc----------c-----------------------------
Q 015587 179 --------------------------------------NS----------K----------------------------- 181 (404)
Q Consensus 179 --------------------------------------kf----------~----------------------------- 181 (404)
++ +
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~ 369 (517)
T 4g85_A 290 LVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVA 369 (517)
T ss_dssp HHHHHHHCHHHHTCHHHHHHHHHHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSE
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhCCCcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceec
Confidence 00 0
Q ss_pred -----------------------H-----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHH
Q 015587 182 -----------------------F-----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVE 233 (404)
Q Consensus 182 -----------------------F-----Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~ 233 (404)
| |++.+|.+.. .++.+|.+.+|++|+|++++. +...++.+|++
T Consensus 370 ~GGRYD~Lv~~f~~~G~~~pavGfa~gierl~~~le~~~---~~~~~~~~~~~~~V~v~~~~~------~~~~~a~~l~~ 440 (517)
T 4g85_A 370 AGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRL---EALEEKIRTTETQVLVASAQK------KLLEERLKLVS 440 (517)
T ss_dssp EEEECHHHHHTTSSSCCCCCEEEEEECHHHHHHHHHHHH---HHTTCCCCSCCCCEEEEESSS------SCHHHHHHHHH
T ss_pred CCCchhHHHHHhccCCCCCCcccccchHHHHHHHHHHhc---cccCccccCCCCEEEEEeCCH------HHHHHHHHHHH
Confidence 0 6555444321 123445566789999999863 46788999999
Q ss_pred HHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 234 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 234 ~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
.||++||+|++|+..+.++++||++|++.|+|++||||++|+++|+|+||++.+|++.+|++++|++.|++.+.
T Consensus 441 ~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~ 514 (517)
T 4g85_A 441 ELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTG 514 (517)
T ss_dssp HHHHTTCCEEECSSSSCCHHHHHHHHHHHCCCEEEEECHHHHHTTEEEEEETTTCCEEEEEHHHHHHHHHHHCC
T ss_pred HHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECChhHhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhc
Confidence 99999999999975546899999999999999999999999999999999999999999999999999987653
No 23
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=364.99 Aligned_cols=278 Identities=18% Similarity=0.164 Sum_probs=222.6
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceecc
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LR 83 (404)
...++||+||+|.++++|++|++.+++.|+++||++|.||+|++.++|.+++|+ ..++||.|.|++| +.++||
T Consensus 14 ~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~---~~~~~y~f~D~~g----~~l~LR 86 (464)
T 4g84_A 14 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGE---DSKLIYDLKDQGG----ELLSLR 86 (464)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC-------CCCBBCCCSS----CCEEEC
T ss_pred eeCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCc---CcceeEEEECCCC----CEEEeC
Confidence 467999999999999999999999999999999999999999999999876664 3589999999988 999999
Q ss_pred CCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCC-hhhHHHHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT-KSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~-~~~a~~e~~~~~~~y~~~~~ 162 (404)
|+.|++++++++. ++.+|+|+||+|+|||+| +|+.|..|+|||+|.++|++|.. +..+|+|++.++ .++++
T Consensus 87 Pd~T~~~aR~~~~----~~~~p~k~~y~g~vfR~e-rp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~---~~~l~ 158 (464)
T 4g84_A 87 YDLTVPFARYLAM----NKLTNIKRYHIAKVYRRD-NPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIM---CEILS 158 (464)
T ss_dssp SCSHHHHHHHHHH----TTCSCEEEEEEEEEECCC-C------CCSEEEEEEEEEESCCSTTHHHHHHHHHH---HHHHH
T ss_pred CcCcHHHHHHHHh----cCCCCceeEEEecceecc-CCccccCccceeeecceeccCCccchhhHHHHHHHH---HHHHH
Confidence 9999999988764 467899999999999999 77544449999999999999964 456899988766 47777
Q ss_pred HhCCcce--EeeC-------------C----------------CCcC---------------------------------
Q 015587 163 EFLAVPV--IKGK-------------K----------------SELE--------------------------------- 178 (404)
Q Consensus 163 ~l~~ipv--~~g~-------------~----------------~~~e--------------------------------- 178 (404)
.+|.-.+ .+|. . ...+
T Consensus 159 ~lgl~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~ 238 (464)
T 4g84_A 159 SLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLV 238 (464)
T ss_dssp HHTCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCEESHHHH
T ss_pred HhCCCCcceeecchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHH
Confidence 7763211 1110 0 0000
Q ss_pred ------------------------------------cc------------------------------------------
Q 015587 179 ------------------------------------NS------------------------------------------ 180 (404)
Q Consensus 179 ------------------------------------kf------------------------------------------ 180 (404)
++
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~~~~~~~~~~~~~~i~~G 318 (464)
T 4g84_A 239 EQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAG 318 (464)
T ss_dssp HHHTTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEECC-------EEEEEEEEE
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECCcccccccCCcccceeccC
Confidence 00
Q ss_pred --------cH-----------------HHHHHHHHHcCCCCCCCCCC--CCCCceEEEEEecCCCCChhhHHHHHHHHHH
Q 015587 181 --------KF-----------------VQIGVMVMVHGDDKGLMLPP--KVASVQVIVIPVPYKDADTQGIFDACTATVE 233 (404)
Q Consensus 181 --------~F-----------------Rli~~Lie~~~d~~Gl~lP~--~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~ 233 (404)
.| |++.+|.+. +..+|+ +..+++|+|++++. +...+|.+|++
T Consensus 319 GRYD~L~~~~~~~g~~~pavGfaigieRl~~~l~~~-----~~~~~~~~~~~~~~v~v~~~~~------~~~~~a~~l~~ 387 (464)
T 4g84_A 319 GRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQR-----LEALEEKIRTTETQVLVASAQK------KLLEERLKLVS 387 (464)
T ss_dssp EECCSTGGGTSTTCCCCCEEEEEECHHHHHHHHHHH-----HHTTTCCCCSCCCCEEEECSSS------SCHHHHHHHHH
T ss_pred CchhHHHHHhccCCCCCCCccccccHHHHHHHHHHh-----ccccCcccccccceEEEEeCCH------HHHHHHHHHHH
Confidence 00 877777654 233443 34567888888763 46788999999
Q ss_pred HHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015587 234 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 307 (404)
Q Consensus 234 ~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el~~~i~~~l~ 307 (404)
.||++||+|++|+..+.++++||++|++.|+|++||||++|+++|+|+||+|.+|+|.+|++++|++.|++.+.
T Consensus 388 ~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~ 461 (464)
T 4g84_A 388 ELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTG 461 (464)
T ss_dssp HHHHTTCCEECCSCSSCCHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHT
T ss_pred HHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhc
Confidence 99999999999875546899999999999999999999999999999999999999999999999999988764
No 24
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=2e-42 Score=355.87 Aligned_cols=280 Identities=16% Similarity=0.182 Sum_probs=225.4
Q ss_pred CccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccc-eEEEEec---CCC---
Q 015587 2 IEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPE-VAWVTKS---GES--- 74 (404)
Q Consensus 2 ~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e-~~~~~~~---g~~--- 74 (404)
++..+++||+||+|.++.+|++|++.+++.|+++||++|.||+|++.++|.++ | +. .++ ||.|.|+ |+.
T Consensus 10 ~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G--~~-~ke~m~~~~d~~~~g~~~~~ 85 (465)
T 3net_A 10 INFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-G--NQ-GDNIIYGLEPILPPNRQAEK 85 (465)
T ss_dssp CCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-G--CC---CBEEEEEEEC--------
T ss_pred ccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-C--CC-CccceEEEeccccccccccc
Confidence 46789999999999999999999999999999999999999999999999876 6 33 478 9999998 400
Q ss_pred -----CCCCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhH--H
Q 015587 75 -----DLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEA--D 147 (404)
Q Consensus 75 -----~l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a--~ 147 (404)
.-++.++|||+.|++++++++.+.. +.++|+|+||+|+|||+| +||+| |+|||+|.++|+++.+...| |
T Consensus 86 ~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~-~~~~p~r~~y~g~vfR~e-~~~~g--r~Ref~Q~g~ei~G~~~~~a~~D 161 (465)
T 3net_A 86 DKSGDTGSEARALKFDQTVPLAAYIARHLN-DLTFPFARYQMDVVFRGE-RAKDG--RFRQFRQCDIDVVGREKLSLLYD 161 (465)
T ss_dssp --------CCEEECSCSHHHHHHHHHHHGG-GSCSSEEEEECCEEECBC---------CCEEEEEEEEEECSSCCCHHHH
T ss_pred ccccCCCCCEEEeCCCChHHHHHHHHhccc-ccCCCeEEEEeccEEecC-CCCCC--CcceeEEeeEEEECCCCccchhh
Confidence 0028999999999999999998764 568999999999999999 67999 99999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHhCCcce--EeeC-------------CC-------------------------------------
Q 015587 148 DEVLQILELYRRIYEEFLAVPV--IKGK-------------KS------------------------------------- 175 (404)
Q Consensus 148 ~e~~~~~~~y~~~~~~l~~ipv--~~g~-------------~~------------------------------------- 175 (404)
+|++.++ .++++.+|.-.+ .+|. ..
T Consensus 162 aEvi~l~---~~~l~~lgl~~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~ 238 (465)
T 3net_A 162 AQMPAII---TEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQK 238 (465)
T ss_dssp HHHHHHH---HHHHHHHTCSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHH---HHHHHHcCCCceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCCCHHHHHH
Confidence 9998877 366666653111 1110 00
Q ss_pred --------------------------------------------C--cCc----c-------------------------
Q 015587 176 --------------------------------------------E--LEN----S------------------------- 180 (404)
Q Consensus 176 --------------------------------------------~--~ek----f------------------------- 180 (404)
. ... +
T Consensus 239 l~~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~~~~~D~~lvrgldYYtG~vFe~~~~~~ 318 (465)
T 3net_A 239 IIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGH 318 (465)
T ss_dssp HHHHHTCCSCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHTTCCGGGEEECTTCCCCSSSEEEEEEEEEETTC
T ss_pred HHHHHHhcCChHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHhcccccCceEEEccCccCCCcccCceEEEEEECCC
Confidence 0 001 2
Q ss_pred -----------------cH---------------HHHHHHHHHcCCCCCCCCCC-CCCCceEEEEEecCCCCChhhHHHH
Q 015587 181 -----------------KF---------------VQIGVMVMVHGDDKGLMLPP-KVASVQVIVIPVPYKDADTQGIFDA 227 (404)
Q Consensus 181 -----------------~F---------------Rli~~Lie~~~d~~Gl~lP~-~iap~qV~Iipi~~~~~~~~~~~~~ 227 (404)
.| |++++|.+. |. +|+ +.+|.||+|+|++ ++...+
T Consensus 319 ~~~~~i~~GGRYD~L~~~f~g~~~pavGfaiGieRli~~L~e~-----g~-~p~~~~~p~~V~Vi~~~------~~~~~~ 386 (465)
T 3net_A 319 EALGSICSGGRYEELVGTFIGEKMPGVGISIGLTRLISRLLKA-----GI-LNTLPPTPAQVVVVNMQ------DELMPT 386 (465)
T ss_dssp GGGCCSSEEEEESSSSGGGTCSCCCEEEEEEEHHHHHHHHHHT-----TS-SCCCCSCSCCEEECCSC------GGGHHH
T ss_pred CccceecccccHHHHhhhhcCCCCceeeeeccHHHHHHHHHHc-----CC-CCCcCCCCCeEEEEEcC------HHHHHH
Confidence 01 666666652 33 776 7899999999986 356789
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCC-eEEEEECCCCceeeechhhHHHHHHHHH
Q 015587 228 CTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAND-QVRAVRRDNGAKIDLPRGSLVERVKELL 306 (404)
Q Consensus 228 a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~-~V~v~~r~~~~k~~v~~~el~~~i~~~l 306 (404)
|.++++.||++|++|++|+++ .++|+|+++|++.|+|++|+||++ +++| +|+||+|++++|..++++++++.++++|
T Consensus 387 A~~la~~LR~~Gi~ve~d~~~-~sl~~q~k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~~t~eq~~v~~~el~~~l~~~l 464 (465)
T 3net_A 387 YLKVSQQLRQAGLNVITNFEK-RQLGKQFQAADKQGIRFCVIIGAD-EAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465)
T ss_dssp HHHHHHHHHHTTCCEEECCSC-CCHHHHHHHHHHHTCCEEEECCHH-HHHTTCCEEEETTTTEEEECC-CCHHHHHHHTC
T ss_pred HHHHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHcCCCEEEEECch-hhcCCEEEEEECCCCceEEeeHHHHHHHHHHhc
Confidence 999999999999999999987 699999999999999999999999 9999 9999999999999999999999887653
No 25
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=1.5e-41 Score=347.91 Aligned_cols=272 Identities=17% Similarity=0.168 Sum_probs=214.2
Q ss_pred CCccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCce
Q 015587 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (404)
Q Consensus 1 ~~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l 80 (404)
|+.+.+++|++||+|.++.+|+.|++.+++.|+++||++|.||+|++.++|.+++||. +.++||+|.|++| +.+
T Consensus 26 m~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~--~~~~my~f~D~~g----~~l 99 (456)
T 3lc0_A 26 MVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEE--ITEQMFNFITKGG----HRV 99 (456)
T ss_dssp CCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH--HHHTCEEEECSSS----CEE
T ss_pred cccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccc--hhhceEEEEcCCC----CEE
Confidence 5678899999999999999999999999999999999999999999999998777873 7899999999988 999
Q ss_pred eccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
+|||+.|++++++++.+.. ++++|+|+||+|+|||+| +|+.| |+|||+|.|+|+++.+...+|+|++.++ .++
T Consensus 100 ~LRpd~T~~~aR~~~~~~~-~~~~P~r~~y~g~vfR~e-~~~~g--R~ReF~Q~g~ei~G~~~~~~DaEvi~l~---~~~ 172 (456)
T 3lc0_A 100 ALRPEMTPSLARLLLGKGR-SLLLPAKWYSIPQCWRYE-AITRG--RRREHYQWNMDIVGVKSVSAEVELVCAA---CWA 172 (456)
T ss_dssp EECSCSHHHHHHHHHHSCT-TCCSSEEEEECCEEECCC-C-------CCEEEEEEEEEESCCSTHHHHHHHHHH---HHH
T ss_pred ecCCcCHHHHHHHHHhcCc-ccCCCEEEEEeccEEecC-CCCCC--CccceEEEEEEEEcCCChHhhHHHHHHH---HHH
Confidence 9999999999999988753 578999999999999999 67889 9999999999999999999999988776 588
Q ss_pred HHHhCC--cce--EeeC-------------CCC----------------cC-----------------c-----------
Q 015587 161 YEEFLA--VPV--IKGK-------------KSE----------------LE-----------------N----------- 179 (404)
Q Consensus 161 ~~~l~~--ipv--~~g~-------------~~~----------------~e-----------------k----------- 179 (404)
++.+|. -.+ .+|. ..+ ++ +
T Consensus 173 l~~lgl~~~~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~~ 252 (456)
T 3lc0_A 173 MRSLGLSSKDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSID 252 (456)
T ss_dssp HHHTTCCTTTEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSHH
T ss_pred HHHcCCCCCceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCHH
Confidence 888874 122 2221 000 00 0
Q ss_pred ------------c-----------------------------c-------------------------------------
Q 015587 180 ------------S-----------------------------K------------------------------------- 181 (404)
Q Consensus 180 ------------f-----------------------------~------------------------------------- 181 (404)
+ +
T Consensus 253 ~l~~~l~~~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~g~~~~I~~GGRYD~Lv~~fg~~~~ 332 (456)
T 3lc0_A 253 EIAQRVGEEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPTP 332 (456)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETTSCSSCSEEEEECSSHHHHTTCSSC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECCCCcceEeecccHHHHHHHhCCCCC
Confidence 0 0
Q ss_pred -----H-----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 015587 182 -----F-----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYS 251 (404)
Q Consensus 182 -----F-----Rli~~Lie~~~d~~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s 251 (404)
| |++.+|.+. |. .|+...+.+|+|++.+ ++....+.++++.||++|++|++|..+ .+
T Consensus 333 ~PavGFaig~eRl~~~l~~~-----~~-~~~~~~~~~v~v~~~~------~~~~~~a~~la~~LR~~Gi~ve~~~~~-~s 399 (456)
T 3lc0_A 333 IPCAGFGFGDCVIVELLQEK-----RL-LPDIPHVVDDVVIPFD------ESMRPHALAVLRRLRDAGRSADIILDK-KK 399 (456)
T ss_dssp CCEEEEEEESSHHHHHHHHT-----TC-CCCCCCCEEEEEEESS------GGGHHHHHHHHHHHHHTTCCEEECCSC-CC
T ss_pred CCEEEEEeEHHHHHHHHHhc-----CC-CCccCCCCcEEEEEcC------HHHHHHHHHHHHHHHHCCCeEEEecCC-CC
Confidence 0 776665442 22 2332335688999886 345688999999999999999999987 58
Q ss_pred hhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeechhhH
Q 015587 252 PGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSL 298 (404)
Q Consensus 252 ~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~~~el 298 (404)
+++++++|++.|+|++|+||++|+++|+|+||++.+++|..+++++.
T Consensus 400 lkkq~k~A~k~ga~~vviiGe~E~~~g~v~vK~l~tgeQ~~~~~~~~ 446 (456)
T 3lc0_A 400 VVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAER 446 (456)
T ss_dssp HHHHHHHHHHTTEEEEEEECHHHHHTTEEEEEECC------------
T ss_pred HHHHHHHHHHcCCCEEEEECCchhcCCeEEEEECCCCCeEEeccccc
Confidence 99999999999999999999999999999999999999998888664
No 26
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=100.00 E-value=2.1e-35 Score=299.40 Aligned_cols=197 Identities=16% Similarity=0.222 Sum_probs=171.7
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
.+|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||++++ +.++||||+
T Consensus 161 g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~~-------~~l~LrPt~ 232 (425)
T 2dq3_A 161 GSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIG-TGQLPKFEEDLYKCER-------DNLYLIPTA 232 (425)
T ss_dssp CSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHH-HSCTTTTGGGSCBCTT-------TCCEECSST
T ss_pred CCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHh-cCCCCcChhhheEecC-------CeEEEcCCC
Confidence 59999999999999999999999999999999999999999999965 8999999999998852 679999999
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC----CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHH
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 162 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~ 162 (404)
|++++++|++++.++++||+|++|+|+|||+|.. +++||+|+|||+|.|+|+++. ++++++++..+++.+.++|+
T Consensus 233 e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~-pe~s~~~~~e~i~~~~~il~ 311 (425)
T 2dq3_A 233 EVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVH-PDTSYDELEKLVKDAEEVLQ 311 (425)
T ss_dssp HHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEEC-GGGHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECC-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999973 478999999999999999554 56799999999999999999
Q ss_pred HhCCcceEe-----eCC--CCcCcc----------------------cH-------------------------------
Q 015587 163 EFLAVPVIK-----GKK--SELENS----------------------KF------------------------------- 182 (404)
Q Consensus 163 ~l~~ipv~~-----g~~--~~~ekf----------------------~F------------------------------- 182 (404)
.|| +|+.+ |.. +....| +|
T Consensus 312 ~LG-L~~rvv~l~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~sn~~Dfqa~r~~i~y~~~~~~k~~~vHtl~Gs~~av~ 390 (425)
T 2dq3_A 312 LLG-LPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVG 390 (425)
T ss_dssp HHT-CCEEEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHH
T ss_pred HCC-CceEEEEecCCcCCChHHhccchhhccchhHHHHHHHHcCCccccCcccCCeEEECCCCCeeEEEEEEeccccHHH
Confidence 987 67631 110 000000 11
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCCCCce-EEEEE
Q 015587 183 VQIGVMVMVHGDDKG-LMLPPKVASVQ-VIVIP 213 (404)
Q Consensus 183 Rli~~Lie~~~d~~G-l~lP~~iap~q-V~Iip 213 (404)
|+|++|+|+|+++.| +.||++++|+| +-+|+
T Consensus 391 R~i~allE~~~~~~G~i~iP~~L~P~~~~~~i~ 423 (425)
T 2dq3_A 391 RTLAAILENYQQEDGSVVVPEVLRDYVGTDVIR 423 (425)
T ss_dssp HHHHHHHHHTBCTTSCEECCTTTHHHHSCSEEC
T ss_pred HHHHHHHHhCCCCCCCEecCccccCccCcccCC
Confidence 999999999999999 99999999999 65553
No 27
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=100.00 E-value=5.8e-35 Score=299.38 Aligned_cols=209 Identities=16% Similarity=0.184 Sum_probs=174.5
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCC----CCCCceec
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGES----DLEVPIAI 82 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~----~l~~~l~L 82 (404)
.+|++.|+|.|+++++.|.+++++.+.++||++|.||.|.+.++|. .+|||+.|.++||++++.|+. +.+++++|
T Consensus 190 Gsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~-~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L 268 (522)
T 3vbb_A 190 GSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQ-EVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYL 268 (522)
T ss_dssp STTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHH-HHSCCC-CCSCCCEEC------------CCEEE
T ss_pred CcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHh-hcCCcccCcccceEeecCCccccccccCcceeE
Confidence 5899999999999999999999999999999999999999999995 699999999999999876421 12378999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCC----CCCCCccccceeEEeceeeecCCh-hhHHHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF----SNPTPFIRSREFLWQEGHTAFATK-SEADDEVLQILELY 157 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~----~~~~gllR~REF~q~e~~~~~~~~-~~a~~e~~~~~~~y 157 (404)
+||+|++++.+|++++.||++||+|++++++|||+|. ++++||+|+|||+|.|+|+|.... +++++++..+++.|
T Consensus 269 ~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 269 IATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp CSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 357899999999999999955443 24999999999999
Q ss_pred HHHHHHhCCcceEeeCCC-------CcCcc----------------------c---------------------H-----
Q 015587 158 RRIYEEFLAVPVIKGKKS-------ELENS----------------------K---------------------F----- 182 (404)
Q Consensus 158 ~~~~~~l~~ipv~~g~~~-------~~ekf----------------------~---------------------F----- 182 (404)
.++|+.|| +|+.+...+ ...+| + |
T Consensus 349 e~il~~LG-Lpyrvv~l~tgdlg~~asktyDiE~w~P~~~~y~EIsScSnc~DyqArr~~iry~~~~~~~~k~~~vhtlN 427 (522)
T 3vbb_A 349 EEFYQSLG-IPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLN 427 (522)
T ss_dssp HHHHHHTT-CCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEESCC---CCCCCBCEEEE
T ss_pred HHHHHHcC-CceEEEEcCCccCCCchhheeceeEecCCCCceeEEEEecCCCCCccceeeeEEccccccCCCeeeceEEe
Confidence 99999987 686331110 00001 1 1
Q ss_pred -------HHHHHHHHHcCCCCCCCCCCCCCCceE----EEEEecCC
Q 015587 183 -------VQIGVMVMVHGDDKGLMLPPKVASVQV----IVIPVPYK 217 (404)
Q Consensus 183 -------Rli~~Lie~~~d~~Gl~lP~~iap~qV----~Iipi~~~ 217 (404)
|+|++|+|+|+++.|+++|+.++|+.. .|+|+..+
T Consensus 428 gs~lav~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~~~~ip~~~~ 473 (522)
T 3vbb_A 428 ATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKP 473 (522)
T ss_dssp EEEEEHHHHHHHHHHHHBCSSEEECCHHHHTTSCTTSSSEEECCSC
T ss_pred ccchHHHHHHHHHHHhCCCCCCeecChHhcCeeCCCcceEeecCCC
Confidence 999999999999999999999999987 78998753
No 28
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=100.00 E-value=9.2e-35 Score=298.53 Aligned_cols=200 Identities=15% Similarity=0.148 Sum_probs=176.3
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCccc-ceEEEEecCCCCCCCceeccCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~-e~~~~~~~g~~~l~~~l~LRPt 85 (404)
.+|++.|+|.|++++++|++++++.+.++||++|.||.|.+.++| .++||++.|.+ +||++++.++ ++++|+||
T Consensus 208 G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~-~~sG~~~~f~e~emf~v~~~~~----~~l~L~PT 282 (501)
T 1wle_A 208 GHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVF-EGCGMTPNAKPSQIYNIDPSRF----EDLNLAGT 282 (501)
T ss_dssp CTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHH-HHHTCCSSSSSCSSCBBCTTTS----SSCEECSS
T ss_pred cCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHH-HhhcCCCccCccccEEEecCCC----CeEEECCc
Confidence 489999999999999999999999999999999999999999999 46999999998 9999987655 78999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC---CCCCccccceeEEeceeeecCCh-hhHHHHHHHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS---NPTPFIRSREFLWQEGHTAFATK-SEADDEVLQILELYRRIY 161 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~---~~~gllR~REF~q~e~~~~~~~~-~~a~~e~~~~~~~y~~~~ 161 (404)
+|++++.++++++.||++||+|++|+++|||+|.+ +++||+|+|||.|.|+|+|+.+. +++++++..+++.|.++|
T Consensus 283 aE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il 362 (501)
T 1wle_A 283 AEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEIL 362 (501)
T ss_dssp HHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986 57899999999999999987776 899999999999999999
Q ss_pred HHhCCcceEeeCCC-------CcCcc----------------------cH------------------------------
Q 015587 162 EEFLAVPVIKGKKS-------ELENS----------------------KF------------------------------ 182 (404)
Q Consensus 162 ~~l~~ipv~~g~~~-------~~ekf----------------------~F------------------------------ 182 (404)
+.|| +|+.+...+ ...+| +|
T Consensus 363 ~~Lg-Lpyrvv~l~tgdlg~~a~~~~DiE~w~p~~~~~~Ei~s~sn~~DfqarR~~iry~~~~gk~~~vHtlngSglav~ 441 (501)
T 1wle_A 363 TELG-LHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATGCAVP 441 (501)
T ss_dssp HHTT-CCEEEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEEECSSSCEEECEEEEEEEEEHH
T ss_pred HHCC-CcEEEEEccCcccCCchhheecHhhcccccccceeEEeccccccchhhhcCcEEECCCCCEEEEEEECCccchHH
Confidence 9987 786432111 11111 12
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCCCCce-EEEE
Q 015587 183 VQIGVMVMVHGDDKG-LMLPPKVASVQ-VIVI 212 (404)
Q Consensus 183 Rli~~Lie~~~d~~G-l~lP~~iap~q-V~Ii 212 (404)
|+|++|+|+|++++| ++||++++|++ +-+|
T Consensus 442 R~l~alLEn~q~~dG~i~iP~~L~Py~g~~~i 473 (501)
T 1wle_A 442 RLLIALLESYQQKDGSVLVPPALQPYLGTDRI 473 (501)
T ss_dssp HHHHHHHHHHBCTTSCEECCGGGHHHHSSSEE
T ss_pred HHHHHHHHhCCCCCCCEeCChhhcCccCcccc
Confidence 999999999999999 99999999997 4343
No 29
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00 E-value=4.1e-35 Score=299.09 Aligned_cols=193 Identities=16% Similarity=0.151 Sum_probs=170.6
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
..+|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||++++ ++++||||
T Consensus 181 ~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~d-------~~l~LrPt 252 (455)
T 2dq0_A 181 SGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEG-STSFEDFEDVIYKVED-------EDLYLIPT 252 (455)
T ss_dssp TCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHT-TSCTTHHHHTCCBBTT-------SSCEECSS
T ss_pred cCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHh-cCCCCCChHhhCeecC-------CcEEEcCc
Confidence 358999999999999999999999999999999999999999999965 7999999999999863 67999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC----CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
+|++++.+|++++.||++||+|++|+|+|||+|.+ .++||+|+|||+|.|+|. +++++++.+++..+++.+.++|
T Consensus 253 ~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~-f~~pe~s~~~~~e~l~~~~~il 331 (455)
T 2dq0_A 253 AEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFV-YSRPEESWEWHEKIIRNAEELF 331 (455)
T ss_dssp THHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEE-EECTTTHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEE-ecCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999974 357999999999999997 6666899999999999999999
Q ss_pred HHhCCcceEeeCCCCc-------------------Ccc----------cH------------------------------
Q 015587 162 EEFLAVPVIKGKKSEL-------------------ENS----------KF------------------------------ 182 (404)
Q Consensus 162 ~~l~~ipv~~g~~~~~-------------------ekf----------~F------------------------------ 182 (404)
+.|| +|+.+...+.. .+| +|
T Consensus 332 ~~LG-L~yrv~~~~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~s~c~DfqarR~~iry~~~~~g~~~~vHtlngs~lav 410 (455)
T 2dq0_A 332 QELE-IPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIAT 410 (455)
T ss_dssp HHTT-CCEEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHHHTEEEESSTTSCCEECEEEEEEEEEH
T ss_pred HHcC-CceEEEECCCccccChhhceeeeeeecCcCCcccEEEeeccchhhHhhccCcEEecCCCCcEEEEEEEechHhHH
Confidence 9987 67643211100 011 11
Q ss_pred -HHHHHHHHHcCCCCC-CCCCCCCCCce
Q 015587 183 -VQIGVMVMVHGDDKG-LMLPPKVASVQ 208 (404)
Q Consensus 183 -Rli~~Lie~~~d~~G-l~lP~~iap~q 208 (404)
|+|++|+|+|+++.| +.||++++|+|
T Consensus 411 ~R~i~allE~~~~~dG~i~iP~~LaP~~ 438 (455)
T 2dq0_A 411 SRAIVAILENHQEEDGTVRIPKVLWKYT 438 (455)
T ss_dssp HHHHHHHHHHSBCTTSCEECCGGGHHHH
T ss_pred HHHHHHHHHHccCCCCcEeCChhhCCcc
Confidence 999999999999999 89999999999
No 30
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=100.00 E-value=5.7e-35 Score=295.75 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=171.8
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
.+|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|. .+||++.|.++||++++ ++++|+||+
T Consensus 155 g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~-~sG~~~~f~~emy~~~d-------~~l~L~Pt~ 226 (421)
T 1ses_A 155 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFL-GTGHFPAYRDQVWAIAE-------TDLYLTGTA 226 (421)
T ss_dssp CSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHH-HHTCTTTTGGGSCBBTT-------SSEEECSST
T ss_pred CCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHH-hcCCCCcCchhcEEEcC-------CeEEEeecC
Confidence 4899999999999999999999999999999999999999999996 58999999999999863 679999999
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCC----CCCCCccccceeEEeceeeecCC-hhhHHHHHHHHHHHHHHHH
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF----SNPTPFIRSREFLWQEGHTAFAT-KSEADDEVLQILELYRRIY 161 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~----~~~~gllR~REF~q~e~~~~~~~-~~~a~~e~~~~~~~y~~~~ 161 (404)
|++++.++++++.||++||+|++|+|+|||+|. +|++||+|+|||+|.|+|+++.+ .+++++++..+++.+.++|
T Consensus 227 e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il 306 (421)
T 1ses_A 227 EVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEIL 306 (421)
T ss_dssp HHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 78999999999999999997765 4889999999999999999
Q ss_pred HHhCCcceEe--------eCCCC-------c----Ccc----------cH------------------------------
Q 015587 162 EEFLAVPVIK--------GKKSE-------L----ENS----------KF------------------------------ 182 (404)
Q Consensus 162 ~~l~~ipv~~--------g~~~~-------~----ekf----------~F------------------------------ 182 (404)
+.|| +|+.+ |.... | ..| +|
T Consensus 307 ~~LG-L~~rvv~l~t~dlg~~a~~~~DiE~w~p~~~~~~ei~s~s~~~Dfqarr~~i~y~~~~~~~~~vhtlngs~lav~ 385 (421)
T 1ses_A 307 RLLE-LPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATP 385 (421)
T ss_dssp HHTT-CCEEEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEET
T ss_pred HHCC-CceEEEEecCccCCchhhhcccHhheechhccchheeeccccchhhhhhhcCEeECCCCCEEEEEecCCccchHH
Confidence 9987 67632 11110 0 001 12
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCCCCce
Q 015587 183 VQIGVMVMVHGDDKG-LMLPPKVASVQ 208 (404)
Q Consensus 183 Rli~~Lie~~~d~~G-l~lP~~iap~q 208 (404)
|+|++|+|+|+++.| ++||++++|+.
T Consensus 386 R~l~allE~~~~~dG~i~iP~~L~Py~ 412 (421)
T 1ses_A 386 RILAMLLENHQLQDGRVRVPQALIPYM 412 (421)
T ss_dssp HHHHHHHHHHBCTTSCEECCGGGHHHH
T ss_pred HHHHHHHHhCCCCCCCEecChhcCCcc
Confidence 999999999999999 99999999986
No 31
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=100.00 E-value=8.4e-34 Score=288.84 Aligned_cols=202 Identities=14% Similarity=0.161 Sum_probs=176.4
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
.+|++.|+|.|+++++.|.+++++.+.+.||++|.||.|.+.++|. .+||++.|.++||++++. + ++++|+||+
T Consensus 174 Gsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~-~sG~l~~f~eemf~v~~~-~----~~~~LipTa 247 (485)
T 3qne_A 174 GHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMA-KTAQLSQFDEELYKVIDG-E----DEKYLIATS 247 (485)
T ss_dssp CTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHH-HHSCHHHHTTTCCEEEET-T----EEEEECSST
T ss_pred cceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHh-hcCCccccccceEEEeCC-C----CeEEEeccc
Confidence 5799999999999999999999999999999999999999999995 589999999999999875 3 689999999
Q ss_pred hhHHHHHHHhhhcc--CCCCCeEEEeeeceeecCCCC----CCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHH
Q 015587 87 ETVMYPYFSKWIRG--HRDLPLKLNQWCNVVRWEFSN----PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 160 (404)
Q Consensus 87 e~~i~~~~~~~i~s--~~~lPlk~~q~~~vfR~E~~~----~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~ 160 (404)
|.+++.++++++.+ |++||+|++|+++|||+|.++ ++||+|+|||+|.|+|+| ++++++++++..|+++|.++
T Consensus 248 E~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f-~~pe~s~~e~e~ml~~~e~i 326 (485)
T 3qne_A 248 EQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVL-TEPEKSWEEFDRMIGCSEEF 326 (485)
T ss_dssp HHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEE-ECGGGHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEE-eCHHHHHHHHHHHHHHHHHH
Confidence 99999999998887 999999999999999999853 689999999999999995 57789999999999999999
Q ss_pred HHHhCCcceEeeCCCC-------cCcc----------------------c---------------------H--------
Q 015587 161 YEEFLAVPVIKGKKSE-------LENS----------------------K---------------------F-------- 182 (404)
Q Consensus 161 ~~~l~~ipv~~g~~~~-------~ekf----------------------~---------------------F-------- 182 (404)
|+.|| +|+.+...+. ..+| + |
T Consensus 327 l~~Lg-Lpyrvv~~~tgdlg~~a~~tyDiE~w~P~~~~~~Eiss~Snc~dyqArr~~iry~~~~~~~~~~~~vhtlNgt~ 405 (485)
T 3qne_A 327 YQSLG-LPYRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTL 405 (485)
T ss_dssp HHHTT-CCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHTTCEECC------CCCBCEEEEEEE
T ss_pred HHHCC-CcEEEEEcCCcccCCchhhheeeeEeccCCCceeEEEEecCCcCccccccceEEecccccCCCceeeEEEecch
Confidence 99986 7864321110 0001 1 2
Q ss_pred ----HHHHHHHHHcCCCCCCCCCCCCCCceE---EEEEecC
Q 015587 183 ----VQIGVMVMVHGDDKGLMLPPKVASVQV---IVIPVPY 216 (404)
Q Consensus 183 ----Rli~~Lie~~~d~~Gl~lP~~iap~qV---~Iipi~~ 216 (404)
|+|++|+|+|++++|+++|+.++|+.. .++|+..
T Consensus 406 lav~R~l~AiLEn~q~~dGi~iP~~L~py~~g~~~~i~~~~ 446 (485)
T 3qne_A 406 SATERTICCILENYQKEDGLVIPEVLRKYIPGEPEFIPYIK 446 (485)
T ss_dssp EEHHHHHHHHHHHSEETTEEECCHHHHTTSTTCCSEEECCC
T ss_pred hHHHHHHHHHHHhcCCCCceecChhhcCccCCcceEeeccc
Confidence 999999999999999999999999874 6778764
No 32
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.98 E-value=2e-32 Score=279.03 Aligned_cols=202 Identities=13% Similarity=0.152 Sum_probs=175.5
Q ss_pred CCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCC
Q 015587 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (404)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt 85 (404)
+.+|++.|+|.|+++++.|.+++++.+.++||++|.||.|.+.++|. .+|||+.|.++||++++. + +.++|+||
T Consensus 196 sGsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~-~sG~~~~f~e~mf~v~~~-~----~~~~L~PT 269 (484)
T 3lss_A 196 AGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMG-EVAQLSQFDEELYQVSGD-G----DKKYLIAT 269 (484)
T ss_dssp HCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHH-HHSCHHHHHHTCCEEESS-S----SCEEECSS
T ss_pred CCceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHH-hcCCcccccccceEeecC-C----cceEEecc
Confidence 35789999999999999999999999999999999999999999995 599999999999999864 3 78999999
Q ss_pred ChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC----CCCCccccceeEEeceeeecCChhh--HHHHHHHHHHHHHH
Q 015587 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSE--ADDEVLQILELYRR 159 (404)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~--a~~e~~~~~~~y~~ 159 (404)
+|++++.++++++.||++||+|++++++|||+|.+ .++||+|+|||+|.|+|+| +++++ +.+++..+++.|.+
T Consensus 270 aE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f-~~pe~~~s~~e~e~~~~~~e~ 348 (484)
T 3lss_A 270 SEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVV-CSPRQEESWRHLEDMITTSEE 348 (484)
T ss_dssp THHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEE-ECSSTTHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEE-eCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999973 4589999999999999995 45566 99999999999999
Q ss_pred HHHHhCCcceEe--------eCCCCcCcc----------------------------------------------cH---
Q 015587 160 IYEEFLAVPVIK--------GKKSELENS----------------------------------------------KF--- 182 (404)
Q Consensus 160 ~~~~l~~ipv~~--------g~~~~~ekf----------------------------------------------~F--- 182 (404)
+|+.|| +|+.+ |... ..+| .|
T Consensus 349 il~~LG-Lpyrvv~l~tgdlg~~a-~~~yDiE~w~P~~~~~~EIsS~Snc~dyqArr~~iry~~~~~~~~~~~~~~~vht 426 (484)
T 3lss_A 349 FNKSLG-LPYRVVNICSGALNNAA-AKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEYCHM 426 (484)
T ss_dssp HHHHHT-CCEEEEECCTTTCCSSC-SEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEESSCCC----CCSCEECEE
T ss_pred HHHHcC-CcEEEEEcCCcccCCch-hheechheecCCCCCeeEEEEecCcccccccccceEEeccccccccCCCceeeeE
Confidence 999997 67532 1100 0000 12
Q ss_pred ---------HHHHHHHHHcCCCCCCCCCCCCCCce--EEEEEecC
Q 015587 183 ---------VQIGVMVMVHGDDKGLMLPPKVASVQ--VIVIPVPY 216 (404)
Q Consensus 183 ---------Rli~~Lie~~~d~~Gl~lP~~iap~q--V~Iipi~~ 216 (404)
|+|.+|+|+|.++.|+++|+.++|+. +-+||...
T Consensus 427 lNgt~~av~R~l~AiLEn~q~~dGi~iP~~L~pym~g~~~i~~~~ 471 (484)
T 3lss_A 427 LNGTLCAITRTMCCICENYQTEEGVVIPDVLRPYMMGIEMIRFEN 471 (484)
T ss_dssp EEEEEEEHHHHHHHHHHHHBCSSEEECCGGGGGGTTTCCEEECCC
T ss_pred EeccchHHHHHHHHHHHhcCCCCCeeCChhhcCccCCcceeecCc
Confidence 99999999999999999999999986 66677753
No 33
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.98 E-value=1.5e-32 Score=284.63 Aligned_cols=192 Identities=14% Similarity=0.163 Sum_probs=170.0
Q ss_pred CCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCC
Q 015587 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (404)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~ 86 (404)
.+|++.|+|.|++++++|.+++++.+.+.||++|.||.|.+.++|. .+||++.|.++||++++ ++++|+||+
T Consensus 264 G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~-~sG~~~~f~e~mf~~~~-------~~~~L~PT~ 335 (536)
T 3err_A 264 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFL-GTGHFPAYRDQVWAIAE-------TDLYLTGTA 335 (536)
T ss_dssp CSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHH-HHTCTTTTGGGCCEETT-------TTEEECSST
T ss_pred CCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHH-hcCCcccChhhceEecC-------CCEEEccCC
Confidence 5899999999999999999999999999999999999999999995 59999999999999964 579999999
Q ss_pred hhHHHHHHHhhhccCCCCCeEEEeeeceeecCC----CCCCCccccceeEEeceeeecCCh-hhHHHHHHHHHHHHHHHH
Q 015587 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF----SNPTPFIRSREFLWQEGHTAFATK-SEADDEVLQILELYRRIY 161 (404)
Q Consensus 87 e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~----~~~~gllR~REF~q~e~~~~~~~~-~~a~~e~~~~~~~y~~~~ 161 (404)
|++++.++++++.||++||+|++|+++|||+|. ++++||+|+|||+|.|+|+|+... +++++++..+++.|.++|
T Consensus 336 E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~ 415 (536)
T 3err_A 336 EVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEIL 415 (536)
T ss_dssp HHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 458899999999999999966554 499999999999999999
Q ss_pred HHhCCcceEeeCCC-------CcCcc----------------------cH------------------------------
Q 015587 162 EEFLAVPVIKGKKS-------ELENS----------------------KF------------------------------ 182 (404)
Q Consensus 162 ~~l~~ipv~~g~~~-------~~ekf----------------------~F------------------------------ 182 (404)
+.|| +|+.+...+ ...+| +|
T Consensus 416 ~~Lg-Lpyrvv~~~tgdlg~~a~~~yDiE~w~p~~~~~~Ei~s~sn~~dyqarr~~iry~~~~~k~~~vhtlngs~~a~~ 494 (536)
T 3err_A 416 RLLE-LPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATP 494 (536)
T ss_dssp HHTT-CCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEET
T ss_pred HHcC-CcEEEEEcCCcccCCChhheeeeeEecCCCCCeEEEEEecCccChhhcccCeEEECCCCCeEeeeEEeccchhHH
Confidence 9987 786432111 11111 11
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCCCCc
Q 015587 183 VQIGVMVMVHGDDKG-LMLPPKVASV 207 (404)
Q Consensus 183 Rli~~Lie~~~d~~G-l~lP~~iap~ 207 (404)
|+|++|+|+|++++| +++|+.++|+
T Consensus 495 R~l~ailen~q~~dg~i~iP~~L~py 520 (536)
T 3err_A 495 RILAMLLENHQLQDGRVRVPQALIPY 520 (536)
T ss_dssp HHHHHHHHHHBCTTSCEECCGGGHHH
T ss_pred HHHHHHHHhcCCCCCcEeCChhhCCc
Confidence 999999999999999 9999999986
No 34
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.97 E-value=1.5e-31 Score=275.74 Aligned_cols=165 Identities=18% Similarity=0.189 Sum_probs=142.2
Q ss_pred CccCCCCccEEeCchHHHHHHHHHHHHHHH-HHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecC--C-----
Q 015587 2 IEYYDISGCYIMRPWAISIWETMQKFFDAE-IKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG--E----- 73 (404)
Q Consensus 2 ~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~-~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g--~----- 73 (404)
+.+..++|+++|+|.|+++|++|++++++. +.++||++|.||+|++.++|.+ +||++.|.++||+++..+ +
T Consensus 215 i~~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~-SGh~~~F~demy~v~~~~~Rd~~~~e 293 (522)
T 2cja_A 215 LKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMK-SGHAKGVYPEIYYVCPPQTRDPDYWE 293 (522)
T ss_dssp EEECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHH-HTGGGTCGGGCCEEECBSCCCHHHHH
T ss_pred eeeeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhh-cCCcCccccceeeeecCCccchhhhh
Confidence 345689999999999999999999999975 8999999999999999999965 899999999999997321 1
Q ss_pred ------------------CC-CCCceeccCCChhHHHHHHHhhhccCCCCCeEEEe-eeceeecCCCCCCCccccceeEE
Q 015587 74 ------------------SD-LEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQ-WCNVVRWEFSNPTPFIRSREFLW 133 (404)
Q Consensus 74 ------------------~~-l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q-~~~vfR~E~~~~~gllR~REF~q 133 (404)
+. -++.++||||+|++++.+|++++.||++||+++|| +|+|||||.++++||+|+|||+|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q 373 (522)
T 2cja_A 294 EVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHR 373 (522)
T ss_dssp HHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEE
T ss_pred hhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEE
Confidence 00 13789999999999999999999999999999999 99999999333389999999999
Q ss_pred eceeeecCChhhHHHHHHHHH-HHHHHHHHHhCCcce
Q 015587 134 QEGHTAFATKSEADDEVLQIL-ELYRRIYEEFLAVPV 169 (404)
Q Consensus 134 ~e~~~~~~~~~~a~~e~~~~~-~~y~~~~~~l~~ipv 169 (404)
.|+|+| ++++++++++..++ .....+++.|| +|.
T Consensus 374 ~E~~~F-~~pe~s~ee~ee~i~~~~~~~l~~LG-Lp~ 408 (522)
T 2cja_A 374 IEIVWI-GTKEEVLKCAEELHDRYMHIFNDILD-IEW 408 (522)
T ss_dssp EEEEEE-EEHHHHHHHHHHHHHHHHHHHHHTSC-CCE
T ss_pred eeEEEE-eChHHHHHHHHHHHHHHHHHHHHHcC-CCE
Confidence 999995 58888999998888 44455668776 663
No 35
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.97 E-value=5.5e-30 Score=258.18 Aligned_cols=149 Identities=14% Similarity=0.074 Sum_probs=134.0
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceecc
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 83 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LR 83 (404)
+..++|++||+|.++.+|++|++.+++.|+++||++|.||+|++.++|.+. + +.+.++||+|.|++| +.++||
T Consensus 10 ~~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~-g--~~~~~~my~f~D~~g----~~l~LR 82 (400)
T 3od1_A 10 FEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVV-S--AILDQQLFKLLDQQG----NTLVLR 82 (400)
T ss_dssp TCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHH-S--SSCGGGSCEEECTTS----CEEEEC
T ss_pred ccCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhc-C--CccccceEEEECCCC----CEEEEC
Confidence 578999999999999999999999999999999999999999999999764 4 467899999999988 999999
Q ss_pred CCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHH
Q 015587 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 163 (404)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~ 163 (404)
|+.|+++++++++... ++++|+|+||+|+|||+| +|+.| |+|||+|.|+|+++.+...+|+|++.++ .++++.
T Consensus 83 pd~T~~~aR~~~~~~~-~~~~P~r~~y~g~vfR~e-~~~~g--R~Ref~Q~g~ei~G~~~~~aDaEvi~l~---~~~l~~ 155 (400)
T 3od1_A 83 PDMTAPIARLVASSLK-DRAYPLRLAYQSNVYRAQ-QNEGG--KPAEFEQLGVELIGDGTASADGEVIALM---IAALKR 155 (400)
T ss_dssp SCSHHHHHHHHHHHCS-SSCSCEEEEEEEEEECCC-C---C--CCSEEEEEEEEEESCCSHHHHHHHHHHH---HHHHHH
T ss_pred CCCHHHHHHHHHhhcc-cCCCCeEEEEEcCEEeCC-CCCCC--CCCccEEeEEEEECCCChHhHHHHHHHH---HHHHHH
Confidence 9999999999987753 578999999999999999 67889 9999999999999999999999988877 588888
Q ss_pred hCC
Q 015587 164 FLA 166 (404)
Q Consensus 164 l~~ 166 (404)
+|.
T Consensus 156 lgl 158 (400)
T 3od1_A 156 AGL 158 (400)
T ss_dssp TTC
T ss_pred CCC
Confidence 874
No 36
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.96 E-value=1.1e-28 Score=244.13 Aligned_cols=151 Identities=12% Similarity=0.046 Sum_probs=132.2
Q ss_pred ccCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhh-hcccccCcccceEEEEecCCCCCCCcee
Q 015587 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQK-EKDHIEGFAPEVAWVTKSGESDLEVPIA 81 (404)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k-~~g~~~~f~~e~~~~~~~g~~~l~~~l~ 81 (404)
.+..++|++||+|.++++|++|++.+++.|+++||++|.||+|++.++|.+ -+++++.+.++||.|.|++| +.++
T Consensus 21 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g----~~l~ 96 (344)
T 1z7m_A 21 NYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEG----QSIT 96 (344)
T ss_dssp -CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTC----CEEE
T ss_pred cCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCC----CEEe
Confidence 467899999999999999999999999999999999999999999999965 23888889999999999988 9999
Q ss_pred ccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHH
Q 015587 82 IRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 161 (404)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~ 161 (404)
|||+.|+.++++++.. ++++|+|+||+|+|||+| +|+.| |+|||+|.|+|+++.+...+|+|++.++ .++|
T Consensus 97 LRpd~T~~~aR~~~~~---~~~~P~rl~y~g~vfR~e-~p~~g--R~REF~Q~g~ei~g~~~~~aDaEvi~l~---~~~l 167 (344)
T 1z7m_A 97 LRYDFTLPLVRLYSQI---KDSTSARYSYFGKIFRKE-KRHKG--RSTENYQIGIELFGESADKSELEILSLA---LQVI 167 (344)
T ss_dssp ECCCSHHHHHHHHHTC---CSCCCEEEEEEEECCCCC-C---------CCEEEEEEEESSCHHHHHHHHHHHH---HHHH
T ss_pred cCCCCcHHHHHHHHhc---CCCCCeEEEEECcEEccC-CCCCC--CcceeEEEEEEEEcCCCcHHHHHHHHHH---HHHH
Confidence 9999999999999876 678999999999999999 77889 9999999999999999999999887766 6899
Q ss_pred HHhCC
Q 015587 162 EEFLA 166 (404)
Q Consensus 162 ~~l~~ 166 (404)
+.+|.
T Consensus 168 ~~lgl 172 (344)
T 1z7m_A 168 EQLGL 172 (344)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 99984
No 37
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.94 E-value=4.6e-27 Score=234.82 Aligned_cols=157 Identities=11% Similarity=0.030 Sum_probs=135.0
Q ss_pred cCCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcc-cceEEEEecCCCCCCCceec
Q 015587 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFA-PEVAWVTKSGESDLEVPIAI 82 (404)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~-~e~~~~~~~g~~~l~~~l~L 82 (404)
+..++|++||+|.++++|++|++.+++.|+++||++|.||+|++.++|.+ ++ +.+. ++||.|.|++| +.++|
T Consensus 23 ~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~-~g--~~~~~~~my~~~D~~g----~~l~L 95 (373)
T 3rac_A 23 ADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLR-AR--SPESSRDWIRLFDGGG----DAVAL 95 (373)
T ss_dssp CCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHT-TS--CTTSCCCCCBCCCCSS----SCEEE
T ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhh-cC--CccchhceEEEECCCC----CEEEE
Confidence 47799999999999999999999999999999999999999999999976 44 4577 89999999988 89999
Q ss_pred cCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC------CCCccccceeEEeceeeecCC-hhhHHHHHHHHHH
Q 015587 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN------PTPFIRSREFLWQEGHTAFAT-KSEADDEVLQILE 155 (404)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~------~~gllR~REF~q~e~~~~~~~-~~~a~~e~~~~~~ 155 (404)
||+.|+.+++++++...+ +++|+|+||+|+|||+| +| +.| |+|||+|.|+|+++.+ ...+|+|++.++
T Consensus 96 Rpd~T~~~aR~~~~~~~~-~~~P~r~~y~g~vfR~e-~~g~~~~~~~g--R~ReF~Q~g~ei~g~~d~~~aDaEvi~l~- 170 (373)
T 3rac_A 96 RPEMTPSIARMAAPRVAA-GRTPIRWCYCERVYRRT-DDPASLSWASG--KAAESTQVGIERIGEEASVDVDMDVLRLL- 170 (373)
T ss_dssp CSSSHHHHHHHHHHHHHT-TCCCCEEEEEEEEEECC---------------CEEEEEEEEEECSSCCCHHHHHHHHHHH-
T ss_pred CCcCHHHHHHHHHhcccc-CCCCeEEEEEcceEccC-CCcccccccCC--ccceeEEeeeEEECCCCCHHHHHHHHHHH-
Confidence 999999999999987665 68999999999999999 55 778 9999999999999998 889999987776
Q ss_pred HHHHHHHHhCC--cceEeeCC
Q 015587 156 LYRRIYEEFLA--VPVIKGKK 174 (404)
Q Consensus 156 ~y~~~~~~l~~--ipv~~g~~ 174 (404)
.++++.+|. +.+.+|..
T Consensus 171 --~~~l~~lgl~~~~i~l~~~ 189 (373)
T 3rac_A 171 --HEASAAAGVRHHRIVVSHA 189 (373)
T ss_dssp --HHHHHHHTCCSCEEEEEET
T ss_pred --HHHHHHcCCCceEEEecCH
Confidence 588888874 23455654
No 38
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.87 E-value=5.7e-22 Score=192.76 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=138.4
Q ss_pred CCCCccEEeCchHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCC----------
Q 015587 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGES---------- 74 (404)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~---------- 74 (404)
..++|++.+.+.+.+|++.|++++++ ..+.||+++.||.+.+.++|+ .+||++.|.+.||.+..-.++
T Consensus 51 ~g~~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e-~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~ 128 (346)
T 3mf2_A 51 MGSDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLE-KSGYLKSFPNLLGCVCGLHGTEREINAAVSR 128 (346)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHH-HTTHHHHCGGGCEEEEEECSCHHHHHHHHHH
T ss_pred cCCCceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHH-hcCCcccChhhcceeecccccchhhhhhhhh
Confidence 45799999999999999999999999 888999999999999999995 599999999999998542110
Q ss_pred ---------C-CCCceeccCCChhHHHHHHHhh-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCCh
Q 015587 75 ---------D-LEVPIAIRPTSETVMYPYFSKW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK 143 (404)
Q Consensus 75 ---------~-l~~~l~LRPt~e~~i~~~~~~~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~ 143 (404)
. .++.++|.||+|++++.++++. +.+ +.|+|+..+++|||+|. ..|++|+|||+|.|+|+ .+++
T Consensus 129 ~~~~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~plr~~~~g~CFR~Ea--S~GL~RvhqF~kvE~v~-~~tp 203 (346)
T 3mf2_A 129 FDAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLP--KGGLRFDVAADCFRREP--SKHLDRLQSFRMREYVC-IGTP 203 (346)
T ss_dssp HHTTSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTCEEEEEEEEEECCCC--CSSTTSCSEEEEEEEEE-EESH
T ss_pred hccccccccccCCCCEEEcccccHHHHHHHccCCccc--ccCeEEEEECCccCCcC--CCCCeeeeeeEEEEEEE-EeCH
Confidence 0 1257999999999999999975 555 45999999999999996 47999999999999999 4689
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCcceE
Q 015587 144 SEADDEVLQILELYRRIYEEFLAVPVI 170 (404)
Q Consensus 144 ~~a~~e~~~~~~~y~~~~~~l~~ipv~ 170 (404)
+++.+|+..+++...++++.|| +|+.
T Consensus 204 Eqs~~e~e~l~~~ae~il~~Lg-Lpyr 229 (346)
T 3mf2_A 204 DDVSDFRERWMVRAQAIARDLG-LTFR 229 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-CCEE
Confidence 9999999999999999999987 6853
No 39
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.78 E-value=2.6e-19 Score=171.73 Aligned_cols=124 Identities=15% Similarity=0.098 Sum_probs=102.2
Q ss_pred HHHHHHHH--HHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhhc
Q 015587 22 ETMQKFFD--AEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIR 99 (404)
Q Consensus 22 ~~i~~~~~--~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~ 99 (404)
+.|+++++ +.++++||++|.||+|++.++|.+ + .|.|++| +.++|||+.|++++ ++..
T Consensus 4 ~~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~----------d--~f~d~~g----~~l~LRpd~T~~~a---~~~~- 63 (275)
T 1usy_A 4 LDFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG----------N--FFLDRKG----NLFSIREDFTKTVL---NHRK- 63 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS----------S--CEEETTS----CEEEECCCHHHHHH---HHHT-
T ss_pred HhHHHHHHHHHHHHHCCCEEecCccccchhhhcc----------c--ccCCCCC----CEEEeCCcChHHHH---HHHh-
Confidence 35777788 999999999999999999999953 1 4568877 99999999999888 4433
Q ss_pred cCCC-CCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcc--eEeeCC
Q 015587 100 GHRD-LPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP--VIKGKK 174 (404)
Q Consensus 100 s~~~-lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ip--v~~g~~ 174 (404)
.+++ +|+|+||+|+|||+| +|+. |||+|.|+|+++.+...+|+|++.++ .++++.+|.-. +.+|..
T Consensus 64 ~~~~~~p~R~~y~g~vfR~e-~~~~-----Ref~Q~g~ei~g~~~~~~DaEvi~l~---~~~l~~lgl~~~~i~l~~~ 132 (275)
T 1usy_A 64 RYSPDSQIKVWYADFVYRYS-GSDL-----VAEYQLGLEKVPRNSLDDSLEVLEII---VESASEFFEGPVIVEIGHT 132 (275)
T ss_dssp TCTTCCCEEEECCEEEEEEE-TTEE-----EEEEEEEEEEESCCSHHHHHHHHHHH---HHHHHHHCCSCEEEEEEET
T ss_pred hcCCCCceEEEEeceEEecC-CCCC-----CeeeEeCEEEecCCCchhHHHHHHHH---HHHHHHcCCCCeEEEeCCH
Confidence 3667 999999999999999 4444 99999999999999999999988887 48888887422 445544
No 40
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.72 E-value=2.2e-17 Score=139.37 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=92.4
Q ss_pred CCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCC--CCCChhHHHHHHHHcCCCEEEEECccccCCCeEE
Q 015587 204 VASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR--DNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVR 281 (404)
Q Consensus 204 iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~--~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~ 281 (404)
--|.||.|+|+++ +..+||.+|++.|+++|+||++|.+ + -++|+|+++|.+.+|||+|+||++|.++|+|+
T Consensus 6 ~~P~Qv~IlpVs~------~~~~YA~~V~~~L~~~GiRvevD~~r~~-e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVs 78 (130)
T 1v95_A 6 SGPVDCSVIVVNK------QTKDYAESVGRKVRDLGMVVDLIFLNTE-VSLSQALEDVSRGGSPFAIVITQQHQIHRSCT 78 (130)
T ss_dssp CCCCTEEEEESSS------GGGHHHHHHHHHHHTTTCCEEEEECTTS-SCHHHHHHHHHHHTCSEEEEECHHHHHHTEEE
T ss_pred CCCCeEEEEEeCc------chHHHHHHHHHHHHHCCCEEEEecCCCC-CcHHHHHHHHHHcCCCEEEEEechHHhcCeeE
Confidence 3589999999983 5789999999999999999999996 6 59999999999999999999999999999999
Q ss_pred EEECCC--CceeeechhhHHHHHHHHHHHHHHH
Q 015587 282 AVRRDN--GAKIDLPRGSLVERVKELLEEVQES 312 (404)
Q Consensus 282 v~~r~~--~~k~~v~~~el~~~i~~~l~~~~~~ 312 (404)
|+.|.. ++...++++++++.+...+..+...
T Consensus 79 VR~r~~~~~e~~~m~lde~i~~l~~~~~~~~~~ 111 (130)
T 1v95_A 79 VNIMFGTPQEHRNMPQADAMVLVARNYERYKNE 111 (130)
T ss_dssp EEECSSSCCEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCccCccCHHHHHHHHHHHHHHHhhh
Confidence 999987 7888999999999998777776553
No 41
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.67 E-value=2.1e-16 Score=152.32 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhh
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (404)
..++.+++.+++.+..+||++|.||.|++.++|.+ +||++. .+||.+.+..+ +.++|||+.++.+..+++..+
T Consensus 71 h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~-~g~~~~--~~m~~~~npl~----e~~~LRp~l~p~l~~~~r~~~ 143 (288)
T 3dsq_A 71 PALLELEEKLAKALHQQGFVQVVTPTIITKSALAK-MTIGED--HPLFSQVFWLD----GKKCLRPMLAPNLYTLWRELE 143 (288)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHT-TSSCC----CCTTTSCEEE----TTEEECSCSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhh-cCCCcc--cccEEeecccc----cchhhhhcChHHHHHHHHHHH
Confidence 34789999999999999999999999999999964 677641 14443322222 568999999999888888877
Q ss_pred ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 99 ~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
.+ +++|+|+|++|+|||+|.. +.+ |+|||+|.++++++........++..++ ..+++.+|.
T Consensus 144 ~~-~~~PlrlfeiG~vFR~E~~-~~~--r~~EF~qle~~i~g~~~~~~f~elkg~l---e~ll~~LGl 204 (288)
T 3dsq_A 144 RL-WDKPIRIFEIGTCYRKESQ-GAQ--HLNEFTMLNLTELGTPLEERHQRLEDMA---RWVLEAAGI 204 (288)
T ss_dssp TT-SCSCEEEEEEEEEECSCCS-SSC--CCSEEEEEEEEEETCCGGGHHHHHHHHH---HHHHHHHTC
T ss_pred hC-CCCCEEEEEEeeEEecCCC-CCC--cCccEEEEEEEEEcCCchhhHHHHHHHH---HHHHHHcCC
Confidence 66 7899999999999999953 555 9999999999999987666666766665 588888874
No 42
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.40 E-value=3.1e-12 Score=123.37 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccccc--CcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhh
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE--GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~--~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (404)
++.+.+.+++.|...||.||.||+|++.+.|.+ .+... .+.+++|.+. +..+|||+.++.+...++..+
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~-~~~~~~~p~~~~~~~~~--------~~~~LR~slsp~L~~~l~~n~ 149 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIER-MGIDNDTELSKQIFRVD--------KNFCLRPMLTPNLYNYLRKLD 149 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHH-TTCCTTSSGGGGCCEET--------TTEEECSCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHh-cCCCcCCchhhhheeeC--------CCeeEcccChHHHHHHHHHhh
Confidence 688999999999999999999999999998754 33322 2556788772 579999999999888777654
Q ss_pred ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhCCcce
Q 015587 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV 169 (404)
Q Consensus 99 ~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~~ipv 169 (404)
. ....|+|+|++|+|||+| .++.+ |.+||+|.|++.++.+. ...++..++ ..+++.+| +++
T Consensus 150 ~-~~~~p~rlfeiG~vFR~E-~~~~~--~~~Ef~ql~~~~~g~~~--~f~elkg~l---e~ll~~lG-l~~ 210 (290)
T 3qtc_A 150 R-ALPDPIKIFEIGPCYRKE-SDGKE--HLEEFTMLVFWQMGSGC--TRENLESII---TDFLNHLG-IDF 210 (290)
T ss_dssp T-TSCSSEEEEEEEEEECCC-SCSSS--CCSEEEEEEEEEESTTC--CHHHHHHHH---HHHHHHHT-CCC
T ss_pred c-cCCCCeEEEEEcCEEecC-CCCCc--CcchheEEEEEEEcCCh--HHHHHHHHH---HHHHHHcC-CCc
Confidence 3 357899999999999999 44667 99999999999998764 344555554 58888886 354
No 43
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.21 E-value=8.2e-11 Score=113.57 Aligned_cols=111 Identities=16% Similarity=0.004 Sum_probs=83.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCceEeccCcccCh-hhHhhh-cccccCcccceEEEEecCCCCCCCceeccCCChhHHH
Q 015587 14 RPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSP-TVLQKE-KDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMY 91 (404)
Q Consensus 14 ~P~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~-~l~~k~-~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~ 91 (404)
...-+++|..|.+.+++.|.+.||.+|.||+|++. +++.+. .+ ++ .++|.+... + +.++||...+...
T Consensus 11 ~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~--e~--a~~f~~~~~-~----~~~~L~~Spe~~~- 80 (294)
T 1nnh_A 11 ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAG--EG--MEPAEVEIY-G----VKMRLTHSMILHK- 80 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTC--CC--CCCCEEEET-T----EEEEECSCSHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCC--Cc--ceeEEEEcC-C----CCEEeccChHHHH-
Confidence 34568899999999999999999999999999998 887654 33 33 567776532 2 5688875444322
Q ss_pred HHHHhhhccCCCCCeEEEeeeceeecCCCCCC--Cccccc-eeEEeceeeecCCh
Q 015587 92 PYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPT--PFIRSR-EFLWQEGHTAFATK 143 (404)
Q Consensus 92 ~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~--gllR~R-EF~q~e~~~~~~~~ 143 (404)
+..+.+ -|.|+||+|+|||+| +||. + |.+ ||+|.|++.++++.
T Consensus 81 ---~~l~~~---g~~rvf~ig~~FR~E-~pq~~~~--RH~~EFtqle~e~~~~~~ 126 (294)
T 1nnh_A 81 ---QLAIAM---GLKKIFVLSPNIRLE-SRQKDDG--RHAYEFTQLDFEVERAKM 126 (294)
T ss_dssp ---HHHHHT---TCCEEEEEEEEECCC-CGGGCSS--SCCSEEEEEEEEEETCCH
T ss_pred ---HHHhhc---CccceEEEEccEeCC-CCCCCCC--ccccceeEEEEEecCCCH
Confidence 111222 278999999999999 4554 7 888 99999999999873
No 44
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.93 E-value=7.3e-09 Score=105.02 Aligned_cols=112 Identities=14% Similarity=-0.008 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHH
Q 015587 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
.-++++..|.+.+++.|...||.+|.||+|++. .++ + +.++|.+. ..| +.++|| +|......+
T Consensus 133 ~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~------~~e--~-~~~~f~~~-~~~----~~~~Lr-~Spel~~~~-- 195 (434)
T 1x54_A 133 AIMKVKETLIMAAREWLLKDGWHEVFPPILVTG------AVE--G-GATLFKLK-YFD----KYAYLS-QSAQLYLEA-- 195 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESC------CSS--C-GGGCCEEE-ETT----EEEEEC-SCSHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee------cCC--C-CceeEEEe-ecC----CcEEec-cChHHHHHH--
Confidence 346789999999999999999999999999865 121 1 34677774 344 779999 332222111
Q ss_pred hhhccCCCCCeEEEeeeceeecCCCCCCCccccc-eeEEeceeeecCChhhHHHHHHH
Q 015587 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFATKSEADDEVLQ 152 (404)
Q Consensus 96 ~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~~~~~a~~e~~~ 152 (404)
+.+ -|.|+||+|+|||+| .++.+ |-+ ||+|.|++.++++..+....+..
T Consensus 196 --~~~---g~~rvf~ig~~FR~E-~~~~~--RH~pEFtqle~e~~~~~~~dlm~~~e~ 245 (434)
T 1x54_A 196 --AIF---GLEKVWSLTPSFRAE-KSRTR--RHLTEFWHLELEAAWMDLWDIMKVEEE 245 (434)
T ss_dssp --HHH---HHSEEEEEEEEECCC-CCCCS--SCCSEEEEEEEEEETCCHHHHHHHHHH
T ss_pred --Hhc---CccceEEEecceecC-CCCCc--ccccEEEEeeEEEcCCCHHHHHHHHHH
Confidence 212 277999999999999 45678 898 99999999999975444433333
No 45
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.92 E-value=9.3e-09 Score=104.03 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+++.|...||.+|.||+|++. .++ + +.++|.+.. .| +.++||...+-..-. +..
T Consensus 133 ~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~------~~e--~-~~~~f~~~~-~~----~~~~L~~Spql~~~~-~~~ 197 (429)
T 1wyd_A 133 VIKIQSLALKAFRETLYKEGFIEIFTPKIIAS------ATE--G-GAQLFPVIY-FG----KEAFLAQSPQLYKEL-MAG 197 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS------CSS--T-TCCCCEEEE-TT----EEEEECSCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEECCEEEee------CCC--C-CceeEEEec-CC----ceEEecCCcHHHHHH-HHh
Confidence 46789999999999999999999999999875 111 1 346787743 34 779997444432222 221
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccc-eeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
. +-|+||+|+|||+| .++.+ |-+ ||+|.|++.++++..+....+..++
T Consensus 198 ---g----~~rvf~ig~~FR~E-~~~~~--RH~pEFtqle~e~~~~~~~dlm~~~e~ll 246 (429)
T 1wyd_A 198 ---V----VERVFEVAPAWRAE-ESDTP--FHLAEFISMDVEMAFADYNDVMQLLEKIL 246 (429)
T ss_dssp ---H----HSEEEEEEEEECCC-CCCSS--SCCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred ---C----cCceEEEccccccc-CCccc--cccceeeEeeeeecCCCHHHHHHHHHHHH
Confidence 1 67999999999999 45677 888 9999999999998555444444443
No 46
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.81 E-value=1.5e-08 Score=102.35 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+++.|...||.+|.||+|++.. .+ + +.++|.+. ..| +.++||-..+-. ..++.
T Consensus 124 ~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~-----~e---~-~~~~f~~~-~~g----~~~~L~~Spel~-~~~l~- 187 (422)
T 1n9w_A 124 PLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG-----AE---G-GSGLFGVD-YFE----KRAYLAQSPQLY-KQIMV- 187 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------------CHHH-HHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeC-----CC---C-CceeEEEe-eCC----CcEEeeeCHHHH-HHHHh-
Confidence 467899999999999999999999999998752 11 1 23567663 333 678997333322 22222
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccc-eeEEeceeeecC-ChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFA-TKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~-~~~~a~~e~~~~~ 154 (404)
+ . +-|+||+|+|||+| +++.+ |-+ ||+|.|++.+++ +..+..+.+..++
T Consensus 188 ---~--g-~~rvf~ig~~FR~E-~~~~~--RH~pEFtqle~e~~~~~d~~dlm~l~e~ll 238 (422)
T 1n9w_A 188 ---G--V-FERVYEVAPVWRME-EHHTS--RHLNEYLSLDVEMGFIADEEDLMRLEEALL 238 (422)
T ss_dssp ---H--H-HSEEEEEEEC----------------CCEEEEEEEESCSSHHHHHHHHHHHH
T ss_pred ---h--C-CCceeEEeCceECC-CCCCC--cccceeEEeeeeeeCCCCHHHHHHHHHHHH
Confidence 1 1 35999999999999 45678 998 999999999998 7555544444443
No 47
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=98.81 E-value=3.8e-08 Score=101.07 Aligned_cols=113 Identities=17% Similarity=0.114 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-+++|..|.+.+++.|...||.+|.||+|++.. ++ + +-++|.+.. .| +.++||-..+- +.+
T Consensus 177 ~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~-----~~---~-ga~~f~~~~-~~----~~~~L~~Spql-----~~k 237 (487)
T 1eov_A 177 IFRIQAGVCELFREYLATKKFTEVHTPKLLGAP-----SE---G-GSSVFEVTY-FK----GKAYLAQSPQF-----NKQ 237 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----SS---S-SSCCCEEEE-TT----EEEEECSCTHH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec-----CC---C-Ccccceecc-CC----ccEEcccChHH-----HHH
Confidence 468899999999999999999999999998853 11 1 236788865 34 78999943332 223
Q ss_pred hh-ccCCCCCeEEEeeeceeecCCCCCCCccccc-eeEEeceeeecC-ChhhHHHHHHHHH
Q 015587 97 WI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFA-TKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i-~s~~~lPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~-~~~~a~~e~~~~~ 154 (404)
.+ .+ -+-|+||+|+|||+|. ++.+ |.+ ||+|.|++..+. +..+..+.+..++
T Consensus 238 ~l~~~---g~~rvy~ig~~FR~E~-~~~~--Rh~pEFt~le~e~af~~~~~dlm~l~E~ll 292 (487)
T 1eov_A 238 QLIVA---DFERVYEIGPVFRAEN-SNTH--RHMTEFTGLDMEMAFEEHYHEVLDTLSELF 292 (487)
T ss_dssp HHHHT---TCCEEEEEEEEECCCC-CCCT--TCCSEEEEEEEEEECSSCTHHHHHHHHHHH
T ss_pred HHHhc---CCCceEEEeccEecCC-CCCC--ccchhhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 22 22 2569999999999994 5678 998 999999998554 4555544444444
No 48
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.75 E-value=7.7e-08 Score=98.85 Aligned_cols=121 Identities=16% Similarity=0.060 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEe-cCCCCCCCceeccCCChhHHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK-SGESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~-~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
-++++..|.+.+++.|...||.+|.||+|.+.. .| -+-++|.+.. ..+ ..++||-..+ ++.
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~-----~G----a~a~~F~~~~~~~~----~~~yLr~Spq-----Lyl 234 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAVA-----GG----AAARPFITHHNALD----MTLYMRIAIE-----LHL 234 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS----SSSCCCEEEETTTT----EEEEECSCSH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeEEecC-----CC----CcccceEecccCCC----ceeEEecCHH-----HHH
Confidence 467899999999999999999999999998641 22 2336777753 334 7899994333 333
Q ss_pred hh-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 96 KW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 96 ~~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
+. +.+ -.-|+||+|+|||+|.. +.. |..||+|.|++.++++..+..+.+..++ ..+++.+
T Consensus 235 k~l~v~---G~~rVyeig~~FR~E~~-~~r--H~pEFT~lE~e~af~d~~dlm~l~E~ll---~~l~~~v 295 (493)
T 3a74_A 235 KRLIVG---GLEKVYEIGRVFRNEGI-STR--HNPEFTMLELYEAYADFRDIMKLTENLI---AHIATEV 295 (493)
T ss_dssp HHHHHT---TCCEEEEEEEEECCCCC-BTT--BCSEEEEEEEEEETCCHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHhhc---ccCceEEECccccCCCC-Ccc--cCCceeEEEEEecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 33 222 24699999999999965 445 9999999999999998766655555554 3555443
No 49
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.59 E-value=3.7e-07 Score=89.74 Aligned_cols=120 Identities=13% Similarity=-0.000 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecC-CCCCCCceeccCCChhHHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG-ESDLEVPIAIRPTSETVMYPYFS 95 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g-~~~l~~~l~LRPt~e~~i~~~~~ 95 (404)
-++++..|.+.+|+.|...||.+|.||+|.+..- + +-.-+.|.+..-+ ...++..+.|+-..+--.-+++
T Consensus 35 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~-----~---~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~- 105 (345)
T 3a5y_A 35 NLLKRAAIMAEIRRFFADRGVLEVETPCMSQATV-----T---DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLL- 105 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCC-----C---CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCC-----C---CCccceEEEEecCcccccCCCEeecCCHHHHHHHHH-
Confidence 5788999999999999999999999999986431 1 1123445554332 1112245777755442222122
Q ss_pred hhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 96 ~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.+ .+ =|+||+|+|||+|.. +.- |..||+|.|.+.++++.++..+.+..++
T Consensus 106 ---~~--g~-~rvyqIg~~FR~E~~-~~r--H~pEFt~lE~e~af~d~~d~m~~~E~li 155 (345)
T 3a5y_A 106 ---VA--GC-GPVFQLCRSFRNEEM-GRY--HNPEFTMLEWYRPHYDMYRLMNEVDDLL 155 (345)
T ss_dssp ---HT--TC-CSEEEEEEEECCCCC-BTT--BCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred ---Hc--CC-CcEEEEEcceeCCCC-ccc--ccchhheeeeeeeCCCHHHHHHHHHHHH
Confidence 22 12 299999999999965 556 9999999999999998766655555544
No 50
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=98.56 E-value=6.1e-07 Score=92.40 Aligned_cols=122 Identities=12% Similarity=0.091 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.+|.||+|.+.. .| -+-++|.+.+.. ++..++||-..+ ++.+
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~-----~G----a~ar~F~t~~~~---~~~~~yL~~Spq-----Lylk 244 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GG----ASARPFITHHNA---LDLDMYLRIAPE-----LYLK 244 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESSC-----CS----SCCCCCEEEETT---TTEEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEecC-----CC----CcccceEeccCC---CCceEEeccCHH-----HHHH
Confidence 457888999999999999999999999998641 22 123567665321 237899985444 2333
Q ss_pred h-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 97 ~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
. +.+ . .=|+||+|+|||+|.. ... |..||+|.|.+.++++..+....+..++ ..+++.+
T Consensus 245 ~L~v~--G-~~rVyeIg~~FR~E~~-~~r--H~pEFt~lE~e~af~d~~dlm~l~E~li---~~~~~~v 304 (504)
T 1e1o_A 245 RLVVG--G-FERVFEINRNFRNEGI-SVR--HNPEFTMMELYMAYADYHDLIELTESLF---RTLAQEV 304 (504)
T ss_dssp HHHHH--T-CCEEEEEEEEECCCCC-CC---CCSEEEEEEEEEESCCHHHHHHHHHHHH---HHHHHHH
T ss_pred HHhhc--C-CCcEEEEcccccCCCC-Ccc--ccCceeeeeeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 3 222 1 3599999999999965 445 9999999999999998776666655555 3455443
No 51
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=98.34 E-value=3.3e-06 Score=85.51 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+++.|...||.+|.||+|.+... + |+ -++|.+..-| .+++|+...+ ++.+
T Consensus 136 ~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~---e-g~-----~~~f~~~~~~-----~~~yL~~Spq-----l~~q 196 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT---E-GG-----TELFPMKYFE-----EDAFLAQSPQ-----LYKQ 196 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS---S-CS-----SSCCEEEETT-----EEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC---C-CC-----ccceeEeeCC-----ccEEEecChH-----HHHH
Confidence 4678899999999999999999999999987531 1 22 2356665432 6788876554 2333
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCcccc-ceeEEeceeeecCC-hhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRS-REFLWQEGHTAFAT-KSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~-REF~q~e~~~~~~~-~~~a~~e~~~~~ 154 (404)
.+.. .. -=|+||+|+|||+|.. ..+ |- -||+|.|++.++++ .++..+.+..++
T Consensus 197 ~l~~-~g-~~rvf~i~~~FR~E~~-~t~--RH~pEFt~le~e~a~~~~~~d~m~~~E~li 251 (438)
T 3nem_A 197 IMMA-SG-LDRVYEIAPIFRAEEH-NTT--RHLNEAWSIDSEMAFIEDEEEVMSFLERLV 251 (438)
T ss_dssp HGGG-TT-CCEEEEEEEEECCCSS-CCT--TCCSEEEEEEEEEESCSSHHHHHHHHHHHH
T ss_pred HHHh-cC-CCceEEEcceEECCCC-CCc--ccccceeeeeeeeccCccHHHHHHHHHHHH
Confidence 3321 12 2499999999999954 333 54 49999999999998 777776666655
No 52
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=98.31 E-value=5.7e-06 Score=83.82 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.||.||+|..... .|+. ++|.+..- | ..++|+-..+ +|.+
T Consensus 131 ~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~----eG~~-----~~F~~~~~-g----~~~~L~~Spq-----Lylq 191 (435)
T 2xgt_A 131 LLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV----EGGS-----TLFNLDYF-G----EQSFLTQSSQ-----LYLE 191 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS----SCTT-----SCCEEEET-T----EEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC----CCch-----hceeeccC-C----cccccCCChH-----HHHH
Confidence 4678999999999999999999999999976542 2221 34555332 2 6788875443 2323
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccccc-eeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.... . -=|+||+|+|||+|.. ... |-. ||+|.|.+.++++.++....+..++
T Consensus 192 ~l~~--g-~~rvfeIg~~FR~E~~-~t~--RH~~EFT~lE~e~af~d~~d~m~~~E~li 244 (435)
T 2xgt_A 192 TCIP--T-LGDVFCIAQSYRAEKS-RTR--RHLAEYAHVEAECPFITLDDLMEKIEELV 244 (435)
T ss_dssp HHHH--H-HCSEEEEEEEECCCSS-CCT--TCCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred Hhhh--c-cCceEEEecceecCCC-Ccc--ccccceeEEEEEEecCCHHHHHHHHHHHH
Confidence 2221 1 1389999999999953 334 555 9999999999999877766666655
No 53
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=98.21 E-value=1.2e-05 Score=83.03 Aligned_cols=122 Identities=12% Similarity=0.131 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.+|.||+|.+.. .| -+-+.|.+.+. .++..++||-..+- +.+
T Consensus 175 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----gG----a~a~~F~t~~~---~~~~~~yL~~SpqL-----~lk 237 (521)
T 3bju_A 175 KFIIRSKIITYIRSFLDELGFLEIETPMMNIIP-----GG----AVAKPFITYHN---ELDMNLYMRIAPEL-----YHK 237 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS----SSCCCCEEEET---TTTEEEEECSCSHH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCceeeccC-----CC----ccccceeeecc---cCCcceEeeCCHHH-----HHH
Confidence 467788999999999999999999999998631 12 12345544332 12378899866552 333
Q ss_pred h-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 97 ~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
. +.+ .+ =|+||+|++||+|...++ +.-||+|.|.+.++++..+....+..++ ..+++.+
T Consensus 238 ~liv~--g~-~rVyeig~~FR~E~~~tr---H~pEFtmlE~e~af~d~~dlm~l~E~li---~~v~~~v 297 (521)
T 3bju_A 238 MLVVG--GI-DRVYEIGRQFRNEGIDLT---HNPEFTTCEFYMAYADYHDLMEITEKMV---SGMVKHI 297 (521)
T ss_dssp HHHHT--TC-CEEEEEEEEECCSCCBTT---BCSEEEEEEEEEETCCHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHhc--Cc-CceEEEEcceeCCCCCCc---cchhhhhhhhhhhcCCHHHHHHHHHHHH---HHHHHHH
Confidence 2 222 22 389999999999976443 7889999999999999877776666665 3444443
No 54
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=98.15 E-value=2.3e-05 Score=80.91 Aligned_cols=122 Identities=14% Similarity=0.088 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.+|.||+|.+.. .| -..+.|..... .++.+++||-..+ ++.+
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~-----gG----A~a~pF~t~~n---~~~~~~yL~~Spq-----Lylk 265 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPIP-----GG----AAAKPFVTHHN---ALDMEMFLRIAPE-----LYLK 265 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS----SSSCCCEEEET---TTTEEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC-----CC----Ccccccccccc---cCCcceecccCHH-----HHHH
Confidence 467889999999999999999999999998531 22 11234433221 1337788875554 2333
Q ss_pred h-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 97 ~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
. +.+ .+ =|+||+|++||+|...+ -+.-||+|.|.+.++++..+..+.+..++ ..+++.+
T Consensus 266 ~L~v~--G~-~rVyeIg~~FR~E~~~~---rH~pEFtmlE~e~af~d~~dlm~l~E~li---~~v~~~v 325 (529)
T 4ex5_A 266 RLIVG--GF-ERVFEINRNFRNEGVSP---RHNPEFTMMEFYAAYTDYRWLMDFTERLI---RQAAVDA 325 (529)
T ss_dssp HHHHT--TC-SEEEEEEEEECCSCCBT---TBCSEEEEEEEEEETCCHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHhc--CC-CcEEEeehheecCCCCC---CcccHhHhhhhhhhcCCHHHHHHHHHHHH---HHHHHHH
Confidence 2 212 12 49999999999996533 27889999999999999877776666665 3455444
No 55
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=98.14 E-value=2.1e-05 Score=82.37 Aligned_cols=120 Identities=16% Similarity=0.183 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEec--CCCCCCCceeccCCChhHHHHHH
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS--GESDLEVPIAIRPTSETVMYPYF 94 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~--g~~~l~~~l~LRPt~e~~i~~~~ 94 (404)
-++++..|.+.+|+.|...||.||.||+|....- +|-. + |.+..+ .+ .-++|+- |.. +|
T Consensus 137 ~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~--------eGAr-~-F~v~~~~~~~----~~y~L~q-SPQ----l~ 197 (585)
T 1c0a_A 137 RLKTRAKITSLVRRFMDDHGFLDIETPMLTKATP--------EGAR-D-YLVPSRVHKG----KFYALPQ-SPQ----LF 197 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS--------SSSC-C-CEEECSSSTT----CEEECCS-CSH----HH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC--------CCCc-c-ceecccccCC----ceEeCcc-CHH----HH
Confidence 3678899999999999999999999999975321 1222 3 555432 12 3455763 332 33
Q ss_pred Hhhh-ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHh
Q 015587 95 SKWI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 164 (404)
Q Consensus 95 ~~~i-~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l 164 (404)
.+.+ .+ .+ =|+||+|+|||+|-..+ - |.=||+|.|.+.++++.++..+.+..++ ..+++.+
T Consensus 198 kq~Lmv~--G~-~rvfqI~~~FR~E~~~t-~--r~pEFT~lE~e~af~d~~dvm~~~E~li---~~i~~~v 259 (585)
T 1c0a_A 198 KQLLMMS--GF-DRYYQIVKCFRDEDLRA-D--RQPEFTQIDVETSFMTAPQVREVMEALV---RHLWLEV 259 (585)
T ss_dssp HHHHHHT--TC-CEEEEEEEEECCCCCBT-T--BCSEEEEEEEEEESCCHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHhc--CC-CceEEEeceeecCCCCC-C--cCcccceeeeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 3432 22 22 28999999999996533 3 6679999999999999877777666665 3555554
No 56
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=98.11 E-value=2.5e-05 Score=81.65 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.||.||+|....- +|-. + |.+..+... +.-++|+-..+ +|.+
T Consensus 143 ~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~--------eGAr-~-F~v~~~~~~--~~~y~L~qSPQ-----l~kq 205 (580)
T 1l0w_A 143 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP--------EGAR-D-FLVPYRHEP--GLFYALPQSPQ-----LFKQ 205 (580)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS--------SSSC-C-CEEECTTST--TEEEECCSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC--------CCCC-C-ccccccccC--CceeECccCHH-----HHHH
Confidence 3678889999999999999999999999975321 1222 2 544432110 13455764332 3444
Q ss_pred h-hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 97 ~-i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
. +.+ .+ =|+||+|+|||+|-..+ - |.=||+|.|.+.++++.++....+..++ ..+++.+.
T Consensus 206 ~Lmv~--G~-~rvfqI~~~FR~E~~~~-~--r~pEFT~lE~e~af~d~~dvm~~~E~li---~~i~~~v~ 266 (580)
T 1l0w_A 206 MLMVA--GL-DRYFQIARCFRDEDLRA-D--RQPDFTQLDLEMSFVEVEDVLELNERLM---AHVFREAL 266 (580)
T ss_dssp HHHHT--TC-SEEEEEEEEECCCCCCS-S--CCSEEEEEEEEEESCCHHHHHHHHHHHH---HHHHHHHT
T ss_pred HHHHh--cc-CCeEEEeceeeCCCCCC-C--cCCCccceeeeecCCCHHHHHHHHHHHH---HHHHHHHh
Confidence 3 222 22 28999999999996533 3 6669999999999999877766666665 46666653
No 57
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.04 E-value=1.8e-05 Score=81.12 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHhcCceEecc-CcccChh-hHh---hhcccccCcccceEEEEec--------------------C
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYF-PLFVSPT-VLQ---KEKDHIEGFAPEVAWVTKS--------------------G 72 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~-P~l~~~~-l~~---k~~g~~~~f~~e~~~~~~~--------------------g 72 (404)
..-.+.+.+.+++.|...||+++.+ |.+++.. .|. ...+|-.--..+.|.+.+. |
T Consensus 224 lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g 303 (508)
T 3l4g_A 224 LHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQG 303 (508)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhcc
Confidence 3456778889999999999999875 7665532 121 1112210000112444321 1
Q ss_pred CC-----------CCCCceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC
Q 015587 73 ES-----------DLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 141 (404)
Q Consensus 73 ~~-----------~l~~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~ 141 (404)
+. +..+..+||+...+...+++..+.+..+..|+|+|++|.|||+|. .... ++.+|+|.++-.++.
T Consensus 304 ~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~-~Dat--HlpeFhQlegl~~~~ 380 (508)
T 3l4g_A 304 GYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNET-LDAT--HLAEFHQIEGVVADH 380 (508)
T ss_dssp BTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSC-CCSS--SCSEEEEEEEEEEEE
T ss_pred ccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCC-CCCC--cCCeEEEEEEEEECC
Confidence 00 001478999999998888888765423468999999999999995 3455 889999999988763
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhCC
Q 015587 142 TKSEADDEVLQILELYRRIYEEFLA 166 (404)
Q Consensus 142 ~~~~a~~e~~~~~~~y~~~~~~l~~ 166 (404)
. -...++..++ ..+++.+|.
T Consensus 381 ~--v~f~dLKg~L---e~~l~~lG~ 400 (508)
T 3l4g_A 381 G--LTLGHLMGVL---REFFTKLGI 400 (508)
T ss_dssp S--CCHHHHHHHH---HHHHHTTTC
T ss_pred C--CCHHHHHHHH---HHHHHHcCC
Confidence 2 2344555555 477888764
No 58
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=97.98 E-value=5.6e-05 Score=79.25 Aligned_cols=113 Identities=15% Similarity=0.093 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHH-hcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 18 ISIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~-~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
++++..|.+.+|+.|. ..||.+|.||+|.... ..| -. + |.+.... .+..++|+-..+ +|.+
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st----~~G----A~-~-F~v~~~~---~g~~~~L~qSpq-----l~kq 209 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT----PGG----AK-E-FLVPSRE---PGKFYSLPQSPQ-----QFKQ 209 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC----CSS----SC-C-CEEECSS---TTCEEECCSSTT-----HHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC----CCC----Cc-C-ceecccc---CCcccccccCHH-----HHHH
Confidence 5778899999999996 7999999999997521 122 12 2 4444321 126677764433 2333
Q ss_pred hh-ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i-~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.+ .+ .+ =|+||+|+|||+|.. ... |.-||+|.|.+..+++.++....+..++
T Consensus 210 ~l~v~--g~-~rvfqi~~~FR~E~~-~t~--r~pEFt~lE~e~af~d~~d~m~~~E~l~ 262 (617)
T 4ah6_A 210 LLMVG--GL-DRYFQVARCYRDEGS-RPD--RQPEFTQIDIEMSFVDQTGIQSLIEGLL 262 (617)
T ss_dssp HHHHT--SC-SEEEEEEEEECCCSS-CSS--SCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHhc--cc-CcEEEEEhheecccC-CCC--cCcceecceeeecCCCHHHHHHHHHHHH
Confidence 22 12 12 399999999999965 344 8899999999999998777666655555
No 59
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=97.98 E-value=5.1e-05 Score=77.13 Aligned_cols=113 Identities=15% Similarity=0.143 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHh
Q 015587 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (404)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (404)
-++++..|.+.+|+.|...||.||.||+|..... +.| .++|.+.-- | .+++|+-..+- +.+
T Consensus 155 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~---eGg------~~~f~~~~~-~----~~~~L~~SpqL-----~lq 215 (456)
T 3m4p_A 155 VLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC---EGG------STLFKLQYF-N----EPAYLTQSSQL-----YLE 215 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEC---------------CCCCEEEET-T----EEEEECSCCHH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC---CCc------ccccccccc-C----CCcccccCHHH-----HHH
Confidence 3688999999999999999999999999976442 111 123444322 2 66778765532 222
Q ss_pred hhccCCCCCeEEEeeeceeecCCCCCCCccc-cceeEEeceeeecCChhhHHHHHHHHH
Q 015587 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR-SREFLWQEGHTAFATKSEADDEVLQIL 154 (404)
Q Consensus 97 ~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR-~REF~q~e~~~~~~~~~~a~~e~~~~~ 154 (404)
.+.. .+ =|+||+|++||+|...+ . | .-||+|.|.+.++++.++..+.+..++
T Consensus 216 ~l~~--g~-~rVyeig~~FR~E~~~t-~--rH~pEFtmlE~e~af~d~~d~m~~~E~li 268 (456)
T 3m4p_A 216 SVIA--SL-GKSFCMLSSYRAEQSRT-V--RHLAEYLHLEAELPFISFEDLLNHLEDLV 268 (456)
T ss_dssp TTHH--HH-SSEEEEEEEECCCSCCC-S--SCCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHh--cc-CcEEEEEhheecCCCCC-C--cchHHHHHhHHHHhcCCHHHHHHHHHHHH
Confidence 2211 11 48999999999995322 2 3 359999999999998777766666555
No 60
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.89 E-value=8.5e-05 Score=76.85 Aligned_cols=114 Identities=15% Similarity=0.076 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhh
Q 015587 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (404)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (404)
++++..|.+.+|+.|...||.+|.||+|.+..- + |+. +.|.+...+ .+++|+-..+ ++.+.
T Consensus 244 ~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---e-gga-----~~F~v~~~~-----~~~yL~~Spq-----l~~k~ 304 (548)
T 3i7f_A 244 FRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS---E-GGS-----NIFEVKYFD-----RKAYLAQSPQ-----LYKQM 304 (548)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------------------CCBCSCTH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC---C-CCc-----ceeEEecCC-----CceEeccCHH-----HHHHH
Confidence 578899999999999999999999999987641 1 122 234333222 4577775543 23222
Q ss_pred hccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC-ChhhHHHHHHHHH
Q 015587 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQIL 154 (404)
Q Consensus 98 i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~e~~~~~ 154 (404)
+.. ..+ =|+||+|+|||+|...+.= -.-||+|.|.+..+. +..+....+..++
T Consensus 305 ll~-~g~-~rVfeI~~~FR~E~~~t~R--Hl~EFtmlE~e~af~~d~~d~m~~~E~li 358 (548)
T 3i7f_A 305 AIM-GDF-RKVFEVGPVFRAENSNTRR--HLTEFEGLDIEMEIVENYHECIDVMEKLF 358 (548)
T ss_dssp HHT-TTC-CEEEEEEEECCCSCCCSSS--CCSCEEEEEEEEECSSCTHHHHHHHHHHH
T ss_pred HHh-cCc-CcEEEEeeeEecCCCCCCC--cchhhhchhhhhhhhcCHHHHHHHHHHHH
Confidence 211 122 4999999999999542221 245999999998766 5666666655554
No 61
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=97.69 E-value=0.0005 Score=67.46 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHhcCceEeccCcccChh-hHhh---hcccccCc-ccceEEEEecCC-------CCCCCceeccCCCh
Q 015587 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPT-VLQK---EKDHIEGF-APEVAWVTKSGE-------SDLEVPIAIRPTSE 87 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~-l~~k---~~g~~~~f-~~e~~~~~~~g~-------~~l~~~l~LRPt~e 87 (404)
-...+.+.+++.|...||.++.+|.+++.. .|.. ...| ..- ..+.|++..... ...++..+||+...
T Consensus 102 p~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~h-par~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~ts 180 (350)
T 1b7y_A 102 PITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHH-PARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTS 180 (350)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSS-TTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSST
T ss_pred HHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCC-ccccccccEEEcCccccccccccccccccceeeccch
Confidence 356678889999999999999999998753 2221 1112 000 022344542110 00126678999877
Q ss_pred hHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC
Q 015587 88 TVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 141 (404)
Q Consensus 88 ~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~ 141 (404)
+...+.++. ...|+|+|++|.|||.|..... ...||+|.++..++.
T Consensus 181 p~llr~l~~-----~~~piriFEiGrVFR~d~~d~t---H~pEF~qlegl~~g~ 226 (350)
T 1b7y_A 181 PMQVRYMVA-----HTPPFRIVVPGRVFRFEQTDAT---HEAVFHQLEGLVVGE 226 (350)
T ss_dssp HHHHHHHHH-----CCSSEEEEEEEEEECCCCCCSS---CCSEEEEEEEEEEET
T ss_pred HHHHHHHHh-----cCCCeeEEEeeeEEECCCCCCC---CCChhHEEEEEEECC
Confidence 777776655 3579999999999998742222 468999999999886
No 62
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.65 E-value=0.00024 Score=73.04 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=57.4
Q ss_pred ceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCCC-CCCccccceeEEeceeeecCChhhHHHHHHHHHHHH
Q 015587 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 157 (404)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y 157 (404)
..+|||+..+++....+.+. +++..|+|+|++|.|||.|. + +.+ +.+||+|.++-.++.... -.++..++
T Consensus 180 ~svLRTsLlPgLL~~lr~N~-~r~~~pvrLFEIG~VFr~d~-~~d~t--h~~Ef~qLagli~G~~vd--f~dLKgil--- 250 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIA-DKLPLPIKLFSIDRCFRREQ-GEDAT--RLYTYFSASCVLVDEELS--VDDGKAVA--- 250 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTT-TTSCSSEEEEEEEEEECCCT-TCSSS--CCSEEEEEEEEEECSSCC--HHHHHHHH---
T ss_pred ccccCccchhhHHHHHHHHH-hCCCCCeeEEEEeeEEecCc-ccccc--ccceeeEEEEEEECCCCC--HHHHHHHH---
Confidence 37899999887777776664 34578999999999999873 3 445 779999999999886322 23444444
Q ss_pred HHHHHHhCC
Q 015587 158 RRIYEEFLA 166 (404)
Q Consensus 158 ~~~~~~l~~ 166 (404)
..+++.+|.
T Consensus 251 E~LL~~LGi 259 (534)
T 2du3_A 251 EALLRQFGF 259 (534)
T ss_dssp HHHHGGGTC
T ss_pred HHHHHHcCC
Confidence 466766653
No 63
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.60 E-value=0.00047 Score=66.12 Aligned_cols=107 Identities=14% Similarity=0.041 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHhcCceEeccCcccChhh-Hhhh---ccccc-CcccceEEEEecCCCCCCCceeccCCChhHHHHHH
Q 015587 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKE---KDHIE-GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYF 94 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l-~~k~---~g~~~-~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~ 94 (404)
-.+.+.+.+++.|...||+|+.+|.+.+... |..- ..|-. ... +.+++ .+..+||++..+...+.+
T Consensus 54 ~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~-d~~~l--------~e~~vLRtsl~p~ll~~l 124 (294)
T 2rhq_A 54 PLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQ-DSFYI--------TDEILMRTHTSPVQARTM 124 (294)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTT-TSCBS--------SSSEEECSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccC-CcEEE--------cCcceeeccCHHHHHHHH
Confidence 3566888899999999999999998877532 2211 01100 000 11222 156789999988888887
Q ss_pred HhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC
Q 015587 95 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 141 (404)
Q Consensus 95 ~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~ 141 (404)
+.+. ...|+++|++|.|||.|..... ...||+|.++...+.
T Consensus 125 ~~N~---~~~~~riFEiG~Vfr~d~~d~~---h~~Ef~~Le~~~~g~ 165 (294)
T 2rhq_A 125 EKRN---GQGPVKIICPGKVYRRDSDDAT---HSHQFTQIEGLVVDK 165 (294)
T ss_dssp HHTT---TCSCEEEEEEEEEECCCCCBTT---BCSEEEEEEEEEEES
T ss_pred HhcC---CCCCccEEEEcCEEecCCCCCC---CCChhhEEEEEEECC
Confidence 7765 3579999999999997632121 346999999999884
No 64
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.38 E-value=0.0012 Score=68.04 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhccccc-CcccceEEEEec---------------------------
Q 015587 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE-GFAPEVAWVTKS--------------------------- 71 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~-~f~~e~~~~~~~--------------------------- 71 (404)
-...+.+.+++.|...||+++..|.+++...-....||-. ...+..|++.+-
T Consensus 58 Pl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~p~~~~~g~~~~~~~~i~~~g~~~~~~~~ 137 (549)
T 2du7_A 58 PVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIKNLGIDIDEEKK 137 (549)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCCCCCCSSSSTTSCCSSCSCCCCSCCCS
T ss_pred HHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECCCCCcccccchhhhhhhhhcccccccchh
Confidence 3567888899999999999999999987553323344521 122225555521
Q ss_pred ------------CC---CC--------------------------------CCCceeccCCChhHHHHHHHhhhccCCCC
Q 015587 72 ------------GE---SD--------------------------------LEVPIAIRPTSETVMYPYFSKWIRGHRDL 104 (404)
Q Consensus 72 ------------g~---~~--------------------------------l~~~l~LRPt~e~~i~~~~~~~i~s~~~l 104 (404)
+. .+ ..+..+||++..+++....+.+.. ....
T Consensus 138 ~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e~svLRTsLlPGLL~~vr~N~~-r~~~ 216 (549)
T 2du7_A 138 ERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLIK-KRKL 216 (549)
T ss_dssp SSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEEEECCSTTHHHHHHHHHTTTT-TSCS
T ss_pred hhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhccccccccccccccccchhHHHHHHHHHh-cCCC
Confidence 00 00 013568999988877776666644 3478
Q ss_pred CeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 105 PLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 105 Plk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
|+|+|.+|.|||.+...... +.+||+|.++-..+.+. .-.++..++ ..+++.+|
T Consensus 217 pvrlFEiGrVFr~D~~~d~t--h~~ef~qLaglv~G~~v--dF~DLKG~L---e~ll~~LG 270 (549)
T 2du7_A 217 PLKLFSIDRCFRREQREDRS--HLMSYHSASCVVVGEDV--SVDDGKVVA---EGLLAQFG 270 (549)
T ss_dssp SEEEEEEEEECCCCSSCSSS--CCSCEEEEEEEEECTTC--CHHHHHHHH---HHHHGGGT
T ss_pred CeEEEEEeeEEecCCcccCc--CCCcceEEEEEEECCCC--CHHHHHHHH---HHHHHHcC
Confidence 99999999999976310223 56999999999888532 223444444 46666665
No 65
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.94 E-value=0.0061 Score=63.48 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=53.6
Q ss_pred CceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC-CCCCccccceeEEeceeeecCChhhHHHHHHHHHHH
Q 015587 78 VPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILEL 156 (404)
Q Consensus 78 ~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~ 156 (404)
+.-+||++..+++....+.+.. ....|+++|.+|.|||.+.. ... ...||+|.++-..+.+.. -.++..++
T Consensus 198 ~~sVLRTsLlPGLL~~vr~N~~-R~~~pvRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~vd--F~DLKGvL-- 269 (648)
T 2odr_B 198 SKLTLRSHMTSGWFLTVSDLMN-KKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGVD--INDGKAIA-- 269 (648)
T ss_dssp CSEEECCCTHHHHHHHHHHHTT-TSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTCC--HHHHHHHH--
T ss_pred ccCcccccchhhHHHHHHHHHh-cCCCCeEEEEEeeEEecCcccccc---CCCcceEEEEEEECCCCC--HHHHHHHH--
Confidence 3578999988877666666643 34789999999999997631 111 358999999998885221 12333333
Q ss_pred HHHHHHHhCC
Q 015587 157 YRRIYEEFLA 166 (404)
Q Consensus 157 y~~~~~~l~~ 166 (404)
..+++.+|.
T Consensus 270 -E~LL~~LGi 278 (648)
T 2odr_B 270 -EGLLSQFGF 278 (648)
T ss_dssp -HHHHHTTTC
T ss_pred -HHHHHHcCC
Confidence 466666653
No 66
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.93 E-value=0.0062 Score=63.50 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=53.6
Q ss_pred CceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC-CCCCccccceeEEeceeeecCChhhHHHHHHHHHHH
Q 015587 78 VPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILEL 156 (404)
Q Consensus 78 ~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~ 156 (404)
+.-+||++..+++....+.+.. ....|+++|.+|.|||.+.. ... ...||+|.++-..+.+.. -.++..++
T Consensus 198 ~~sVLRTSLlPGLL~~lr~N~~-R~~~pvRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~vd--F~DLKGvL-- 269 (665)
T 2odr_A 198 SKLTLRSHMTSGWFLTVSDLMN-KKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGVD--INDGKAIA-- 269 (665)
T ss_dssp CSEEECCCTHHHHHHHHHHHTT-TSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTCC--HHHHHHHH--
T ss_pred ccCcccccchhhHHHHHHHHHh-cCCCCeEEEEEeeEEecCcccccc---CCCcceEEEEEEECCCCC--HHHHHHHH--
Confidence 3578999988877666666643 34789999999999997631 111 358999999998885221 12333333
Q ss_pred HHHHHHHhCC
Q 015587 157 YRRIYEEFLA 166 (404)
Q Consensus 157 y~~~~~~l~~ 166 (404)
..+++.+|.
T Consensus 270 -E~LL~~LGi 278 (665)
T 2odr_A 270 -EGLLSQFGF 278 (665)
T ss_dssp -HHHHHTTTC
T ss_pred -HHHHHHcCC
Confidence 466666653
No 67
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.92 E-value=0.0065 Score=63.49 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=53.7
Q ss_pred CceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC-CCCCccccceeEEeceeeecCChhhHHHHHHHHHHH
Q 015587 78 VPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILEL 156 (404)
Q Consensus 78 ~~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~ 156 (404)
+.-+||++..+++....+.+.. ....|+++|.+|.|||.+.. ... ...||+|.++-..+.+.. -.++..++
T Consensus 198 ~~sVLRTSLlPGLL~~vr~N~~-R~~~pvRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~vD--F~DLKGvL-- 269 (685)
T 2odr_D 198 SKLTLRSHMTSGWFLTVSDLMN-KKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGVD--INDGKAIA-- 269 (685)
T ss_dssp CSEEECCCTHHHHHHHHHHHTT-TSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTCC--HHHHHHHH--
T ss_pred ccCcccccchhhHHHHHHHHHh-CCCCCeEEEEeccEEecCcccccc---CCCcceEEEEEEECCCCC--HHHHHHHH--
Confidence 3578999988877666666643 34789999999999997631 111 358999999998885221 12333333
Q ss_pred HHHHHHHhCC
Q 015587 157 YRRIYEEFLA 166 (404)
Q Consensus 157 y~~~~~~l~~ 166 (404)
..+++.+|.
T Consensus 270 -E~LL~~LGi 278 (685)
T 2odr_D 270 -EGLLSQFGF 278 (685)
T ss_dssp -HHHHHTTTC
T ss_pred -HHHHHHcCC
Confidence 466666653
No 68
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.84 E-value=0.0061 Score=63.81 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=53.1
Q ss_pred ceeccCCChhHHHHHHHhhhccCCCCCeEEEeeeceeecCCC-CCCCccccceeEEeceeeecCChhhHHHHHHHHHHHH
Q 015587 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 157 (404)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y 157 (404)
.-+||++..+++....+.+.. ....|+|+|.+|.|||.+.. ... ...||+|.++-..+.+.. -.++..++
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~-R~~~pvRLFEIGrVFR~D~~lDat---h~~EfhqLeGlv~G~~vD--F~DLKGvL--- 269 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLMN-KKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGVD--INDGKAIA--- 269 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHTT-TSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTCC--HHHHHHHH---
T ss_pred cCcccccchhhHHHHHHHHHh-CCCCCeEEEEEeeEEccCcccccc---CCCcceEEEEEEECCCCC--HHHHHHHH---
Confidence 468999988877666666643 34789999999999997631 111 358999999998885221 12333333
Q ss_pred HHHHHHhCC
Q 015587 158 RRIYEEFLA 166 (404)
Q Consensus 158 ~~~~~~l~~ 166 (404)
..+++.+|.
T Consensus 270 E~LL~~LGi 278 (701)
T 2odr_C 270 EGLLSQFGF 278 (701)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHcCC
Confidence 466666653
No 69
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=96.66 E-value=0.018 Score=60.34 Aligned_cols=129 Identities=10% Similarity=0.029 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhh-HhhhcccccCcccceEEEEecCCCCCC-CceeccCCChhHHHHHHHhhh
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKEKDHIEGFAPEVAWVTKSGESDLE-VPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l-~~k~~g~~~~f~~e~~~~~~~g~~~l~-~~l~LRPt~e~~i~~~~~~~i 98 (404)
.+.+.+.+++.+...||+|+.++.|.+.+. +.+ -+.-+.- .+...+.. ++. +.-+||++.-+++....+.+.
T Consensus 393 ~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~-l~~~~~~-~~~v~L~N----Pis~e~svmRtsLlpgLL~~l~~N~ 466 (589)
T 3l4g_B 393 LNKLTELLRHDMAAAGFTEALTFALCSQEDIADK-LGVDISA-TKAVHISN----PKTAEFQVARTTLLPGLLKTIAANR 466 (589)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGG-GTSCTTS-SCCCBBSS----CSSGGGSEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHH-hCCCCCC-CCeEEEcC----CCchhHhHHHHHHHHHHHHHHHHHh
Confidence 455678899999999999999999998763 321 1100000 11222221 111 456899999888888887774
Q ss_pred ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCChhhHHHHHHHHHHHHHHHHHHhC
Q 015587 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 99 ~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
. +..|+|+|.+|.|||.+..... ..+|+++..+...|... .-.++..++ ..+++.+|
T Consensus 467 ~--~~~~vrlFEiG~Vf~~d~~~~~---~~~e~~~la~~~~g~~~--~f~~lkg~l---e~ll~~lg 523 (589)
T 3l4g_B 467 K--MPLPLKLFEISDIVIKDSNTDV---GAKNYRHLCAVYYNKNP--GFEIIHGLL---DRIMQLLD 523 (589)
T ss_dssp T--SCSCEEEEEEEEEEEECTTSTT---SEEEEEEEEEEEESSSC--CHHHHHHHH---HHHHHHTT
T ss_pred c--CCCceEEEEeeeEEecCCcccc---CCccccEEEEEEECCCC--CHHHHHHHH---HHHHHHcC
Confidence 4 3469999999999997743222 36788888887766432 122333334 36666665
No 70
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=96.62 E-value=0.0021 Score=62.35 Aligned_cols=106 Identities=10% Similarity=0.095 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHhcCceEeccCcccChh-hHh---hhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHH
Q 015587 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPT-VLQ---KEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYF 94 (404)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~-l~~---k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~ 94 (404)
.-...+.+.+++.|...||+++.+|.+++.. .|. ...+|-.--..+.|.+ ++..+||+...+...+.+
T Consensus 107 hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i--------~e~~vLRThtsp~~lr~l 178 (327)
T 3pco_A 107 HPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF--------DTTRLLRTQTSGVQIRTM 178 (327)
T ss_dssp CHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS--------SSSCEECSCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe--------CCCceecccCCHHHHHHH
Confidence 4466788889999999999999999886532 121 1111210000112333 156789998877776665
Q ss_pred HhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC
Q 015587 95 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 141 (404)
Q Consensus 95 ~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~ 141 (404)
+. ...|++++.+|.|||.+. . .. .+-+|+|.++-.++.
T Consensus 179 ~~-----~~~pirifeiGrVyR~d~-d-~t--h~p~fhqlegl~v~~ 216 (327)
T 3pco_A 179 KA-----QQPPIRIIAPGRVYRNDY-D-QT--HTPMFHQMEGLIVDT 216 (327)
T ss_dssp TT-----CCSSCCBCCEECCBCSCC-B-TT--BCSBCCEEEEEEEET
T ss_pred Hh-----CCCCeeEEeeccEEecCC-C-cc--cCCcccEEEEEEECC
Confidence 43 467999999999999983 2 22 456799998877653
No 71
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=95.29 E-value=0.13 Score=46.43 Aligned_cols=137 Identities=7% Similarity=0.019 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEe-cCCCCCCCceeccCCChhHHHHHHHhhhc
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK-SGESDLEVPIAIRPTSETVMYPYFSKWIR 99 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~-~g~~~l~~~l~LRPt~e~~i~~~~~~~i~ 99 (404)
.+++++.+++.+...||+|+.|-.|.+.+.+.+ .+..+ ..+...+.. -+ ++.-+||++.-+++....+.++.
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~-~~~~~--~~~~v~l~NPls----~e~~vmRtsLlpgLL~~~~~N~~ 78 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDG-LESYP--SKNLVMLLNPLS----ADLNCMRQTLLFGGLESIAHNAN 78 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTT-CSSSC--GGGCEEBSSGGG----CSCCEECSCSHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHHHHh-hcccC--cCCeEEEeCCcc----hhHHHHHHHhHHHHHHHHHHHhc
Confidence 346788899999999999999999999876632 11100 012223321 11 15567999998888887777653
Q ss_pred cCCCCCeEEEeeeceeecCCCCC---CCccccceeEEeceeeecCCh------hhHHHHHHHHHHHHHHHHHHhC
Q 015587 100 GHRDLPLKLNQWCNVVRWEFSNP---TPFIRSREFLWQEGHTAFATK------SEADDEVLQILELYRRIYEEFL 165 (404)
Q Consensus 100 s~~~lPlk~~q~~~vfR~E~~~~---~gllR~REF~q~e~~~~~~~~------~~a~~e~~~~~~~y~~~~~~l~ 165 (404)
. +.-++++|++|.||+.+.... .++-..+|..+..+-+.|... ......+..+......++..+|
T Consensus 79 r-~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg 152 (213)
T 3ig2_A 79 R-KNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLG 152 (213)
T ss_dssp -----CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTT
T ss_pred C-CCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhC
Confidence 2 344699999999999763110 111124666665554444211 0111223333334457777775
No 72
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=94.88 E-value=0.36 Score=43.52 Aligned_cols=113 Identities=12% Similarity=0.019 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCC-CCceeccCCChhHHHHHHHhhhc
Q 015587 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDL-EVPIAIRPTSETVMYPYFSKWIR 99 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l-~~~l~LRPt~e~~i~~~~~~~i~ 99 (404)
.+++++.+++.+...||+|+.|-.|.+.+.+.+ .+..+ ..+...+.. ++ ++.=+||++.-+.+....+.++.
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~-~~~~~--~~~~v~l~N----Pls~e~~vmRtsLlpgLL~~~~~N~~ 78 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEG-LKSHP--REMAVELMN----PLSQELNCMRQTLLFGGLETLSHNLR 78 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTT-CSSSC--GGGCCBCSS----BSCSSEEEECSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhh-hcccC--cCCeEEecC----CccHHHHHHHHHhHHHHHHHHHHHHc
Confidence 356788899999999999999999998876632 11000 011111211 11 25567999998888888877754
Q ss_pred cCCCCCeEEEeeeceeecCCCCC---CCccccceeEEeceeeecC
Q 015587 100 GHRDLPLKLNQWCNVVRWEFSNP---TPFIRSREFLWQEGHTAFA 141 (404)
Q Consensus 100 s~~~lPlk~~q~~~vfR~E~~~~---~gllR~REF~q~e~~~~~~ 141 (404)
. +.-++++|++|.||+.+.... .++-..+|..+..+-+.|.
T Consensus 79 r-~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~ 122 (213)
T 3ica_A 79 R-KHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQ 122 (213)
T ss_dssp T-TCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEB
T ss_pred C-CCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCC
Confidence 2 333599999999999763210 1111346666665555453
No 73
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=94.70 E-value=0.3 Score=52.89 Aligned_cols=109 Identities=8% Similarity=-0.037 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccc-eEEEEecCCCCCCCceeccCCChhHHHHHHHhhh
Q 015587 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPE-VAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e-~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (404)
-.+.+.+.+++.+...||+|+.|..|.+.+.+ ..-+ . ..+ .+.+..--. ++.-+||++.-+......+.+.
T Consensus 494 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~--~--~~~~~v~L~NPis---~e~svLRtsLlpgLL~~l~~N~ 565 (795)
T 2rhq_B 494 DRQHKTRTLKETLEGAGLNQAITYSLVSKDHA-KDFA--L--QERPTISLLMPMS---EAHATLRQSLLPHLIEATAYNV 565 (795)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEECTTTT-TTTC--S--SCCCCEECSSCSC---TTSSEECSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCCccCHHHH-HhhC--C--CCCceEEEcCCCc---hhhhhhhhccHHHHHHHHHHHh
Confidence 35667888999999999999999999887654 2111 0 122 233322111 1456899999988888888775
Q ss_pred ccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecC
Q 015587 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 141 (404)
Q Consensus 99 ~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~ 141 (404)
. +...|+++|.+|.|||.+.. ... . +||++..+=..|.
T Consensus 566 ~-r~~~~vrlFEiG~Vf~~d~~-~~~--~-~e~~~la~l~~G~ 603 (795)
T 2rhq_B 566 A-RKNKDVRLYEIGRVFFGNGE-GEL--P-DEVEYLSGILTGE 603 (795)
T ss_dssp H-TTCCCEEEEEEEEEEECCCT-TSC--C-EEEEEEEEEEESE
T ss_pred c-CCCCCeEEEEEeeEEecCCc-ccC--c-chhhEEEEEEEec
Confidence 4 34679999999999996421 111 2 7888877766664
No 74
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=94.04 E-value=0.39 Score=51.83 Aligned_cols=103 Identities=14% Similarity=-0.001 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCCCCceeccCCChhHHHHHHHhhhc
Q 015587 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIR 99 (404)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~ 99 (404)
-.+.+.+.+++.+...||+|+.|-.|.+.+.+.. -+ . ..+.+.+..-=. ++.-+||++.-+.+....+.+..
T Consensus 490 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~-l~---~-~~~~v~L~NPis---~d~svLRtsLlpgLL~~l~~N~~ 561 (785)
T 1b7y_B 490 APYRKEQRLREVLSGLGFQEVYTYSFMDPEDARR-FR---L-DPPRLLLLNPLA---PEKAALRTHLFPGLVRVLKENLD 561 (785)
T ss_dssp HHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHH-TT---C-CCCSCEESSCSS---TTSSEECSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHh-cC---C-CCCeEEEcCCCc---hhhhhhhhhhHHHHHHHHHHHhh
Confidence 3566788899999999999999888888765521 11 0 122233332111 14558999998888888887754
Q ss_pred cCC-CCCeEEEeeeceeecCCCCCCCccccceeEEeceeeecCC
Q 015587 100 GHR-DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT 142 (404)
Q Consensus 100 s~~-~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~ 142 (404)
. . ..|+++|.+|.||| + +|+++..+=..|..
T Consensus 562 r-~~~~~vrlFEiG~Vf~-~----------~e~~~lagl~~G~~ 593 (785)
T 1b7y_B 562 L-DRPERALLFEVGRVFR-E----------REETHLAGLLFGEG 593 (785)
T ss_dssp H-SCCSCEEEEEEEEEES-S----------SEEEEEEEEEESSC
T ss_pred c-CCCCCeEEEEEeeeec-c----------ChhhEEEEEEECCC
Confidence 2 3 47999999999998 2 77877777666643
No 75
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=93.95 E-value=0.51 Score=47.10 Aligned_cols=101 Identities=10% Similarity=-0.008 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhc--------CceEecc-CcccChh-hHhh---hcccccCcccceEEEEecCCCCCCCceeccCCCh
Q 015587 21 WETMQKFFDAEIKKM--------KIQNCYF-PLFVSPT-VLQK---EKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSE 87 (404)
Q Consensus 21 ~~~i~~~~~~~~~~~--------G~~~i~~-P~l~~~~-l~~k---~~g~~~~f~~e~~~~~~~g~~~l~~~l~LRPt~e 87 (404)
...+.+.+++.|... ||+++.+ |.+++.. .|.. ..+|-.--..+.|++ ++..+||....
T Consensus 50 l~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi--------~~~~vLRThts 121 (415)
T 3cmq_A 50 LWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYL--------NRTHMLRAHTS 121 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBS--------SSSEEECSSGG
T ss_pred HHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEe--------cCCeEEcCCCc
Confidence 455666666666665 8999998 6665433 3321 122210001123333 25689998766
Q ss_pred hHHHHHHHhhhccCCCCCeEEEeeeceeecCCCCCCCccccceeEEeceeee
Q 015587 88 TVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTA 139 (404)
Q Consensus 88 ~~i~~~~~~~i~s~~~lPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~ 139 (404)
+...++++.. .| |++.+|.|||.+.- ... .+-+|+|.++-.+
T Consensus 122 ~~~~~~l~~~------~~-k~~~~G~VyR~D~~-da~--h~n~fhQ~egv~l 163 (415)
T 3cmq_A 122 AHQWDLLHAG------LD-AFLVVGDVYRRDQI-DSQ--HYPIFHQLEAVRL 163 (415)
T ss_dssp GGHHHHHHTT------CS-EEEEEEEEECCCCC-BTT--BCSEEEEEEEEEE
T ss_pred HHHHHHHHHC------CC-CEEEeeeEEeccch-hhh--hhHHhcCCCcEEE
Confidence 7766766542 36 99999999999842 233 5678888876544
No 76
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=73.98 E-value=23 Score=38.18 Aligned_cols=86 Identities=13% Similarity=-0.035 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCceEeccCcccChhhHhhhcccccCcccceEEEEecCCCCC-CCceeccCCChhHHHHHHHhhhccCC
Q 015587 24 MQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDL-EVPIAIRPTSETVMYPYFSKWIRGHR 102 (404)
Q Consensus 24 i~~~~~~~~~~~G~~~i~~P~l~~~~l~~k~~g~~~~f~~e~~~~~~~g~~~l-~~~l~LRPt~e~~i~~~~~~~i~s~~ 102 (404)
..+.+++.+...||+|+.|-.|.+.+.+.+ .+. .++...+.. ++ ++.=+||++.=+.+....+.+.. ++
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~-~~~----~~~~v~l~N----Pis~e~svmRtsLlpgLL~~~~~N~~-r~ 563 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQM-IHP----GVEALLLPS----PISVEMSAMRLSLWTGLLATVVYNQN-RQ 563 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHH-HSS----SCCCCBCSS----CSCSTTCEECSSSHHHHHHHHHHHHT-SS
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHh-hCC----CCCeEEEcC----CCchhHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 456788888999999999999999886643 220 011111111 11 15567999998888888877754 34
Q ss_pred CCCeEEEeeeceeecCC
Q 015587 103 DLPLKLNQWCNVVRWEF 119 (404)
Q Consensus 103 ~lPlk~~q~~~vfR~E~ 119 (404)
..++++|++|.||+.+.
T Consensus 564 ~~~v~lFEiG~Vf~~~~ 580 (795)
T 3pco_B 564 QNRVRIFESGLRFVPDT 580 (795)
T ss_dssp CCCCEEEEEEEEEEECT
T ss_pred CCCccEEEeeeEEecCC
Confidence 55799999999998763
No 77
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=65.43 E-value=16 Score=33.37 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=47.1
Q ss_pred CCCceEEEEEecCCCC------ChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEEC
Q 015587 204 VASVQVIVIPVPYKDA------DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIG 271 (404)
Q Consensus 204 iap~qV~Iipi~~~~~------~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG 271 (404)
+.|.||.+||-..... +-....+....+.++|+++||||.+....+ -.++..|...|+|. |++-
T Consensus 86 ~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFIDpd---~~qi~aA~~~GA~~-IELh 155 (243)
T 1m5w_A 86 TKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDAD---EEQIKAAAEVGAPF-IEIH 155 (243)
T ss_dssp HCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSC---HHHHHHHHHTTCSE-EEEE
T ss_pred cCCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCcCE-EEEe
Confidence 4678999999643211 123356777899999999999999877542 46899999999995 5654
No 78
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=63.63 E-value=2.7 Score=32.90 Aligned_cols=27 Identities=30% Similarity=0.764 Sum_probs=20.4
Q ss_pred eeeccCHHHHHHHhcC--CCEEE----eecCCC
Q 015587 325 IQIVKTWDEFVEALGQ--RKMIL----APWCDE 351 (404)
Q Consensus 325 ~~~~~~~~e~~~~~~~--~~~~~----~pwc~~ 351 (404)
+..++|.++|.+.|.+ +++++ +|||+.
T Consensus 2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~ 34 (105)
T 3zzx_A 2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGP 34 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHH
T ss_pred eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCC
Confidence 5678999999999853 45544 799974
No 79
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=57.79 E-value=16 Score=34.01 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=45.8
Q ss_pred CCCceEEEEEecCCCC------ChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEEC
Q 015587 204 VASVQVIVIPVPYKDA------DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIG 271 (404)
Q Consensus 204 iap~qV~Iipi~~~~~------~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiIG 271 (404)
+.|.||.+||-..... +-....+....+.++|+++||||.+.... --.++..|...|+|+ |++-
T Consensus 114 ~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFIDp---d~~qI~aA~~~GAd~-IELh 183 (278)
T 3gk0_A 114 IRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDP---DEAQIRAAHETGAPV-IELH 183 (278)
T ss_dssp HCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECS---CHHHHHHHHHHTCSE-EEEC
T ss_pred cCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHhCcCE-EEEe
Confidence 4678999999542110 11223566778889999999999887754 245899999999995 6773
No 80
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=49.30 E-value=14 Score=34.09 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=43.8
Q ss_pred CCCceEEEEEecCCCCChh----hHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCCCEEEEE
Q 015587 204 VASVQVIVIPVPYKDADTQ----GIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEI 270 (404)
Q Consensus 204 iap~qV~Iipi~~~~~~~~----~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~GvP~~iiI 270 (404)
+.|.||.+||-.......+ -..+....+.++|+++||||.+.... --.++..|...|+|+ |++
T Consensus 85 ~kP~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFIDp---d~~qi~aA~~~GAd~-IEL 151 (260)
T 3o6c_A 85 LKPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFINP---SLEDIEKSKILKAQF-IEL 151 (260)
T ss_dssp HCCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEECS---CHHHHHHHHHTTCSE-EEE
T ss_pred cCCCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHhCCCE-EEE
Confidence 4678999999542110001 02344567888999999999887754 245899999999995 677
No 81
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=43.80 E-value=15 Score=27.84 Aligned_cols=28 Identities=11% Similarity=0.292 Sum_probs=18.8
Q ss_pred CeeeccCHHHHHHHhcC---CCE----EEeecCCC
Q 015587 324 CIQIVKTWDEFVEALGQ---RKM----ILAPWCDE 351 (404)
Q Consensus 324 ~~~~~~~~~e~~~~~~~---~~~----~~~pwc~~ 351 (404)
++..+++.++|.+.+.+ ++. .-+|||+.
T Consensus 1 ~v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~ 35 (112)
T 3d6i_A 1 PVIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEP 35 (112)
T ss_dssp CEEEECCHHHHHHHHTTTTTTCCEEEEEECCC--C
T ss_pred CccccCCHHHHHHHHhcccCCCEEEEEEECCCCHH
Confidence 36678888999998874 553 34789975
No 82
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=39.38 E-value=19 Score=28.09 Aligned_cols=28 Identities=29% Similarity=0.812 Sum_probs=21.7
Q ss_pred CeeeccCHHHHHHHhcCCCE----EEeecCCC
Q 015587 324 CIQIVKTWDEFVEALGQRKM----ILAPWCDE 351 (404)
Q Consensus 324 ~~~~~~~~~e~~~~~~~~~~----~~~pwc~~ 351 (404)
.+..++|.++|.+++++++. .-+|||+.
T Consensus 16 ~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~ 47 (121)
T 2j23_A 16 SVQVISSYDQFKQVTGGDKVVVIDFWATWCGP 47 (121)
T ss_dssp CEEECCSHHHHHHHHSSSSCEEEEEECTTCST
T ss_pred ceEEcCCHHHHHHHHcCCCEEEEEEECCCCHh
Confidence 46778999999999976663 34789975
No 83
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=36.69 E-value=63 Score=25.36 Aligned_cols=38 Identities=8% Similarity=0.059 Sum_probs=31.0
Q ss_pred ceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCC
Q 015587 207 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRD 248 (404)
Q Consensus 207 ~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~ 248 (404)
.++.|+|++. + +++.++..++.+.|++.|++..+..-.
T Consensus 5 ve~sv~Plg~-~---~svs~~Va~~i~vl~~sGl~y~~~pmg 42 (104)
T 2ibo_A 5 IALQVLPLVQ-G---IDRIAVIDQVIAYLQTQEVTMVVTPFE 42 (104)
T ss_dssp EEEEEEECSC-S---HHHHHHHHHHHHHHHHSSSEEEECSSC
T ss_pred EEEEEEcCCC-C---CcHHHHHHHHHHHHHHcCCCeEecCCc
Confidence 4678899972 2 578899999999999999999887643
No 84
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=32.83 E-value=21 Score=26.47 Aligned_cols=27 Identities=30% Similarity=0.668 Sum_probs=19.1
Q ss_pred eeeccCHHHHHHHhc--CCCEE----EeecCCC
Q 015587 325 IQIVKTWDEFVEALG--QRKMI----LAPWCDE 351 (404)
Q Consensus 325 ~~~~~~~~e~~~~~~--~~~~~----~~pwc~~ 351 (404)
+..++|.+++.+.+. +++.+ -+|||+.
T Consensus 2 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~ 34 (105)
T 3m9j_A 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGP 34 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTSCEEEEEECTTCHH
T ss_pred eEEcCCHHHHHHHHHhcCCCeEEEEEECCCChh
Confidence 456788999998887 55543 3589853
No 85
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.25 E-value=91 Score=26.68 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=49.5
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCh-------------hHHHHHH----HHcCCCEEEEECccccCCCeEEEEECCCCcee
Q 015587 229 TATVEKLCEAGIRANSDFRDNYSP-------------GWKYSHW----EMKGVPLRIEIGPKDLANDQVRAVRRDNGAKI 291 (404)
Q Consensus 229 ~~i~~~Lr~~Girv~~D~~~~~s~-------------g~k~~~a----e~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~ 291 (404)
.++.+-|+++=|-...|.+. +- |.+.... .-.+.|+.++|.++ ++.+++..+-.|
T Consensus 81 ~~V~~~l~~nfV~w~~dv~~--~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~---~~~~~vl~~~~G--- 152 (178)
T 2ec4_A 81 ESIVSYLSQNFITWAWDLTK--DSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGK---RSSNEVLNVIQG--- 152 (178)
T ss_dssp HHHHHHHHHTEEEEEEECCS--HHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCC---SSCCCEEEEECS---
T ss_pred HHHHHHHHcCEEEEEEeCCC--chhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcC---CCceEEEEEEeC---
Confidence 45777787754444566653 23 3343332 44789999999876 445555555555
Q ss_pred eechhhHHHHHHHHHHHHHHHH
Q 015587 292 DLPRGSLVERVKELLEEVQESL 313 (404)
Q Consensus 292 ~v~~~el~~~i~~~l~~~~~~l 313 (404)
.++.+++.+.+.+.++..+..|
T Consensus 153 ~~~~~~ll~~L~~~~e~~~~~l 174 (178)
T 2ec4_A 153 NTTVDELMMRLMAAMEIFTAQQ 174 (178)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHhhHhh
Confidence 4678889888888887665543
No 86
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=30.71 E-value=1.7e+02 Score=24.91 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhcCCCEEEeecCCC
Q 015587 307 EEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDE 351 (404)
Q Consensus 307 ~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~pwc~~ 351 (404)
+..|.++|+++.+.+++..+. ..+..-+.|-||-
T Consensus 113 E~~H~~~~~~~l~~l~~~~~~-----------~~~~~~~C~~CG~ 146 (170)
T 3pwf_A 113 EKIHAELYRKAKEKAEKGEDI-----------EIKKVYICPICGY 146 (170)
T ss_dssp HHHHHHHHHHHHHHHTTTCCC-----------CCSCEEECTTTCC
T ss_pred HHHHHHHHHHHHHHHhcCCcC-----------CCCCeeEeCCCCC
Confidence 345888888888877766432 1234555777753
No 87
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=30.69 E-value=1.1e+02 Score=26.08 Aligned_cols=53 Identities=6% Similarity=-0.150 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHhhC-CCEEEEeCC--CCCChhHHHHHHHHcCCCEEEEECccc
Q 015587 222 QGIFDACTATVEKLCEA-GIRANSDFR--DNYSPGWKYSHWEMKGVPLRIEIGPKD 274 (404)
Q Consensus 222 ~~~~~~a~~i~~~Lr~~-Girv~~D~~--~~~s~g~k~~~ae~~GvP~~iiIG~~E 274 (404)
+-.++.|.++.+.|++. |++|.+.-. ...++..+...|+..++-+.|-|--+-
T Consensus 28 ~~~l~ia~~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH~Na 83 (179)
T 1jwq_A 28 TFNLAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANS 83 (179)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEccCC
Confidence 34568899999999999 999987422 124789999999999999999885443
No 88
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=29.40 E-value=30 Score=27.70 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=24.9
Q ss_pred HHcCeeeccCHHHHHHHhcCCCEEE----eecCCChhH
Q 015587 321 RDACIQIVKTWDEFVEALGQRKMIL----APWCDEEEV 354 (404)
Q Consensus 321 ~~~~~~~~~~~~e~~~~~~~~~~~~----~pwc~~~~~ 354 (404)
+..+...++|.++|.+.+++++.++ +.|||...-
T Consensus 4 ~~~~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~ 41 (112)
T 3iv4_A 4 FQGVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISAN 41 (112)
T ss_dssp GGGCEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHH
T ss_pred hhcceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHH
Confidence 4568889999999999997655433 459986433
No 89
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=29.25 E-value=66 Score=25.20 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=30.5
Q ss_pred ceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCC
Q 015587 207 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR 247 (404)
Q Consensus 207 ~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~ 247 (404)
.++.|+|++..+ +.+.++..++.+.|++.|+...+..-
T Consensus 8 ve~sv~Plg~~~---~svs~~Va~~i~~i~~sGl~y~~~pm 45 (104)
T 1lxj_A 8 ADVCMVPIGTDS---ASISDFVALIEKKIRESPLKSTLHSA 45 (104)
T ss_dssp EEEEEEEESCSC---SCCHHHHHHHHHHHHTSSSEEEEETT
T ss_pred EEEEEEeccCCC---CCHHHHHHHHHHHHHHcCCCeEeCCC
Confidence 578889997532 35788889999999999999988764
No 90
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=28.68 E-value=26 Score=26.67 Aligned_cols=27 Identities=37% Similarity=0.724 Sum_probs=19.6
Q ss_pred eeeccCHHHHHHHhcCCCEEE----eecCCC
Q 015587 325 IQIVKTWDEFVEALGQRKMIL----APWCDE 351 (404)
Q Consensus 325 ~~~~~~~~e~~~~~~~~~~~~----~pwc~~ 351 (404)
...-.|.++|.+++++++.++ +|||+.
T Consensus 8 ~~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~ 38 (109)
T 3f3q_A 8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGP 38 (109)
T ss_dssp CEECCSHHHHHHHTTSSSCEEEEEECTTCHH
T ss_pred ccCCCCHHHHHHHHhcCCEEEEEEECCcCHh
Confidence 344578899999998777544 689953
No 91
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=28.18 E-value=61 Score=22.40 Aligned_cols=36 Identities=14% Similarity=0.049 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHcCeeeccCHHHHHHHhcCCCE
Q 015587 308 EVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKM 343 (404)
Q Consensus 308 ~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~ 343 (404)
...++|.+.|.+|+.+--+.-.+.+.=.++|.++|+
T Consensus 7 ~~Re~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGL 42 (54)
T 3ff5_A 7 EFREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGL 42 (54)
T ss_dssp HHHHHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHhCChhhhcCCHHHHHHHHHHcCC
Confidence 467889999999999998888889988889987765
No 92
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=27.88 E-value=80 Score=24.91 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=32.2
Q ss_pred CCCCCCCceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCC
Q 015587 200 LPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR 247 (404)
Q Consensus 200 lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~ 247 (404)
.|-.+ ..+.|+|++.. +++.++..++.+.|++.|+...+..-
T Consensus 13 ~~~~i--v~~sv~Plg~~----~svs~~Va~~i~vi~~sGL~y~~~pm 54 (106)
T 1vk8_A 13 MPKVT--VSIKVVPAVED----GRLHEVIDRAIEKISSWGMKYEVGPS 54 (106)
T ss_dssp -CCEE--EEEEEEESSCG----GGHHHHHHHHHHHHHTTCSCEEECSS
T ss_pred CCeEE--EEEEEEeCCCC----CchHHHHHHHHHHHHHcCCCeEeCCC
Confidence 45443 56788899742 57889999999999999999988764
No 93
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=27.15 E-value=66 Score=24.93 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=30.2
Q ss_pred ceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCC
Q 015587 207 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR 247 (404)
Q Consensus 207 ~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~ 247 (404)
.++.++|++..+ +.+.++..++.+.|++.|+...+..-
T Consensus 4 ve~sv~Plg~~~---~svs~~Va~~i~~i~~sgl~y~~~pm 41 (99)
T 1lxn_A 4 AELTVIPLGTCS---TSLSSYVAAAVEALKKLNVRYEISGM 41 (99)
T ss_dssp EEEEEEESSCSS---SCCHHHHHHHHHHHTTSSCEEEEETT
T ss_pred EEEEEEecCCCC---CcHHHHHHHHHHHHHHcCCCeEeCCC
Confidence 467889997432 35788889999999999999988764
No 94
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=27.05 E-value=23 Score=27.38 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=20.5
Q ss_pred CeeeccCHHHHHHHhcCCCEE----EeecCCC
Q 015587 324 CIQIVKTWDEFVEALGQRKMI----LAPWCDE 351 (404)
Q Consensus 324 ~~~~~~~~~e~~~~~~~~~~~----~~pwc~~ 351 (404)
.+..++|.+++.+++++++.+ -+|||+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~ 44 (114)
T 2oe3_A 13 SITKLTNLTEFRNLIKQNDKLVIDFYATWCGP 44 (114)
T ss_dssp GSCBCCSHHHHHHHHHHCSEEEEEEECTTCHH
T ss_pred heeecCCHHHHHHHHhCCCEEEEEEECCCCHH
Confidence 456778899999988877643 3689853
No 95
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=27.00 E-value=86 Score=27.07 Aligned_cols=120 Identities=17% Similarity=0.258 Sum_probs=59.9
Q ss_pred EEEEEecCCCCCh-hhHHHHHHHHHHHHhhCC--CEE-EEeCCCCCChhHHHHHHHHcCCCEEEEECccccCCCeEEEEE
Q 015587 209 VIVIPVPYKDADT-QGIFDACTATVEKLCEAG--IRA-NSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVR 284 (404)
Q Consensus 209 V~Iipi~~~~~~~-~~~~~~a~~i~~~Lr~~G--irv-~~D~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~ 284 (404)
+++|-.....|.. ......-.++++.+...+ +.+ .+|...+..+. ....-.++|..+++. +|... +
T Consensus 34 ~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~---~~~~v~~~Pt~~~~~-----~g~~~--~ 103 (241)
T 3idv_A 34 TVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLA---SRFDVSGYPTIKILK-----KGQAV--D 103 (241)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHH---HHTTCCSSSEEEEEE-----TTEEE--E
T ss_pred eEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHH---HhcCCCcCCEEEEEc-----CCCcc--c
Confidence 4455444333311 234556678888887654 444 45654322233 334568999888883 34433 2
Q ss_pred CCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhcCCCEE----EeecCCC
Q 015587 285 RDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMI----LAPWCDE 351 (404)
Q Consensus 285 r~~~~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~pwc~~ 351 (404)
..|. .+.+++.+.+.+.+.. +..... ..+..-|-++|...+++++.+ -+|||+.
T Consensus 104 -~~g~---~~~~~l~~~i~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~ 161 (241)
T 3idv_A 104 -YEGS---RTQEEIVAKVREVSQP--------DWTPPP-EVTLVLTKENFDEVVNDADIILVEFYAPWCGH 161 (241)
T ss_dssp -CCSC---SCHHHHHHHHHHHHST--------TCCCCC-CSSEECCTTTHHHHHHHCSEEEEEEECTTCTG
T ss_pred -ccCc---ccHHHHHHHHhhccCc--------cccccc-ccceeccHHHHHHhhccCCeEEEEEECCCCHH
Confidence 2332 3455666655544321 000011 122334445566666655533 4789974
No 96
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=25.90 E-value=2.5e+02 Score=23.67 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=43.2
Q ss_pred HHHHHHhhCCCEEEEeCCCCCChhHHHHHH-----HHcCCCEEEEECccccCCCeEEEEECCCCceeee---chhhHHHH
Q 015587 230 ATVEKLCEAGIRANSDFRDNYSPGWKYSHW-----EMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDL---PRGSLVER 301 (404)
Q Consensus 230 ~i~~~Lr~~Girv~~D~~~~~s~g~k~~~a-----e~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v---~~~el~~~ 301 (404)
++++.|.+.-+-+.+|......+..++..+ ...|+|..+++.++ |++...-.---..... .+.++.+.
T Consensus 66 ~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~d----G~~v~~~ty~p~~~~~~~~~f~~~L~~ 141 (173)
T 3ira_A 66 EVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMTPG----KKPFFAGTYIPKNTRFNQIGMLELVPR 141 (173)
T ss_dssp HHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEEECTT----SCEEEEESSCCSSCBTTBCCHHHHHHH
T ss_pred HHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcceeeECCC----CCceeeeeeCCCCcCCCCCCHHHHHHH
Confidence 566777665566777765422344444322 35799999999753 4443332100011112 24444555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015587 302 VKELLEEVQESLFVAAK 318 (404)
Q Consensus 302 i~~~l~~~~~~l~~~a~ 318 (404)
+.+...+-...+.+.|.
T Consensus 142 v~~~~~~~~~~~~~~~~ 158 (173)
T 3ira_A 142 IKEIWEQQHEEVLDSAE 158 (173)
T ss_dssp HHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555444445544444
No 97
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=25.74 E-value=99 Score=24.42 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=30.4
Q ss_pred ceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCC
Q 015587 207 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR 247 (404)
Q Consensus 207 ~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~ 247 (404)
.++.|+|++.. +.+..+..++.+.|++.|+...+..-
T Consensus 10 ve~sv~Plg~~----~svs~~Va~~i~vl~~sGl~y~~~pm 46 (109)
T 1yqh_A 10 MSFSVVPQAKT----KDVYSVVDKAIEVVQQSGVRYEVGAM 46 (109)
T ss_dssp EEEEEEEECSS----SCHHHHHHHHHHHHHHSCSEEEECSS
T ss_pred EEEEEEeCCCC----CcHHHHHHHHHHHHHHcCCCeEecCC
Confidence 57888999742 46888999999999999999988764
No 98
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=25.30 E-value=7.6 Score=29.46 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=13.3
Q ss_pred eeccCHHHHHHHhcCCCEE----EeecCCC
Q 015587 326 QIVKTWDEFVEALGQRKMI----LAPWCDE 351 (404)
Q Consensus 326 ~~~~~~~e~~~~~~~~~~~----~~pwc~~ 351 (404)
..++|.++|.+.+++++.+ -+|||+.
T Consensus 3 ~~i~~~~~~~~~~~~~~~vlv~f~a~wC~~ 32 (105)
T 4euy_A 3 NTFKTIEELATYIEEQQLVLLFIKTENCGV 32 (105)
T ss_dssp -------CCSSSTTCSSEEEEEEEESSCHH
T ss_pred cccCCHHHHHHHHhcCCCEEEEEeCCCCcc
Confidence 4567777777777666643 3789964
No 99
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=24.21 E-value=1.5e+02 Score=19.30 Aligned_cols=50 Identities=16% Similarity=-0.009 Sum_probs=31.5
Q ss_pred eeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeccCHHHHHHHhc
Q 015587 290 KIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALG 339 (404)
Q Consensus 290 k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~ 339 (404)
...++.+++...+..+-......-.....+..+.+-.-.=|++||...+.
T Consensus 14 ~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~ 63 (66)
T 3li6_A 14 DGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63 (66)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHT
T ss_pred CCcccHHHHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 45688888888777765545544455555555444333456888887764
No 100
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=23.46 E-value=75 Score=27.37 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=27.5
Q ss_pred CceEEEEEecCCCCChhhH-HHHHHHHHHHHhhCCCEEEEeCCCCCChhHHHHHHHHcCC
Q 015587 206 SVQVIVIPVPYKDADTQGI-FDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGV 264 (404)
Q Consensus 206 p~qV~Iipi~~~~~~~~~~-~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k~~~ae~~Gv 264 (404)
.++|.|---+ +.. ...+..|+..|...||++-+|+++ ...|..+...-..+|
T Consensus 8 ~yDVFiSfrg------~D~r~~Fv~~L~~~L~~~gi~~f~D~~~-l~~G~~i~~~l~~aI 60 (176)
T 3jrn_A 8 KYDVFLSFRG------HDTRHNFISFLYKELVRRSIRTFKDDKE-LENGQRFSPELKSPI 60 (176)
T ss_dssp CEEEEEEECH------HHHTTTHHHHHHHHHHHTTCCEECCCC---------------CC
T ss_pred CCeEEEECcC------cccChHHHHHHHHHHHHCCCEEEEEccc-ccCCCchHHHHHHHH
Confidence 4678775433 222 246778999999999999999876 577877765433333
No 101
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=23.39 E-value=33 Score=27.05 Aligned_cols=29 Identities=17% Similarity=0.447 Sum_probs=21.3
Q ss_pred cCeeeccCHHHHHHHhcCCCE----EEeecCCC
Q 015587 323 ACIQIVKTWDEFVEALGQRKM----ILAPWCDE 351 (404)
Q Consensus 323 ~~~~~~~~~~e~~~~~~~~~~----~~~pwc~~ 351 (404)
..+..+++.++|.+++++++. .-+|||+.
T Consensus 19 ~mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~ 51 (125)
T 1r26_A 19 PSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGP 51 (125)
T ss_dssp SCCEEECCHHHHHHHHHSSSCEEEEEECTTCHH
T ss_pred cceEECCCHHHHHHHHccCCEEEEEEECCcCHh
Confidence 347788998999999976663 34689863
No 102
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=22.49 E-value=40 Score=25.15 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=19.4
Q ss_pred CeeeccCHHHHHHHh--cCCCE----EEeecCCC
Q 015587 324 CIQIVKTWDEFVEAL--GQRKM----ILAPWCDE 351 (404)
Q Consensus 324 ~~~~~~~~~e~~~~~--~~~~~----~~~pwc~~ 351 (404)
++..++|.++|.+.+ ++++. .-+|||+.
T Consensus 2 ~v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~ 35 (107)
T 1gh2_A 2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGP 35 (107)
T ss_dssp CEEEECSGGGHHHHHHHTTTSCEEEEEECSSCHH
T ss_pred ceEEecCHHHHHHHHHhCCCCEEEEEEECCCChh
Confidence 466778888888888 34553 34689964
No 103
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=22.46 E-value=33 Score=27.94 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=22.0
Q ss_pred HHHHHcCeeeccCHHHHHHHhcC--CCE----EEeecCCC
Q 015587 318 KQRRDACIQIVKTWDEFVEALGQ--RKM----ILAPWCDE 351 (404)
Q Consensus 318 ~~~~~~~~~~~~~~~e~~~~~~~--~~~----~~~pwc~~ 351 (404)
.......+..+++.++|.+.+++ ++. .-+|||+.
T Consensus 7 ~~~~~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~ 46 (153)
T 2wz9_A 7 AEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQ 46 (153)
T ss_dssp -----CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHH
T ss_pred cccccCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHh
Confidence 34445788889999999988875 553 34689953
No 104
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=22.24 E-value=85 Score=24.35 Aligned_cols=37 Identities=11% Similarity=0.226 Sum_probs=29.7
Q ss_pred ceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCC
Q 015587 207 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR 247 (404)
Q Consensus 207 ~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~ 247 (404)
.++.++|++. + +.+.++..++.+.|++.|+...+..-
T Consensus 9 ve~sv~Plg~-~---~svs~~Va~~i~~l~~sGl~y~~~pm 45 (100)
T 2epi_A 9 AEVSIIPLGK-G---ASVSKYVKKAIEVFKKYDLKVETNAM 45 (100)
T ss_dssp EEEEEEEECB-S---SCCHHHHHHHHHHHTTSSCEEEEETT
T ss_pred EEEEEEeCCC-C---CCHHHHHHHHHHHHHHcCCCeEecCC
Confidence 5688899972 2 35778888999999999999988764
No 105
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=22.01 E-value=1.9e+02 Score=24.65 Aligned_cols=124 Identities=13% Similarity=0.066 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHhhCCCEEEEe-CCCC--C----ChhHHHHHHHHcCCCEEEEECccccCCCeEEEEECCCCceeeec
Q 015587 222 QGIFDACTATVEKLCEAGIRANSD-FRDN--Y----SPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLP 294 (404)
Q Consensus 222 ~~~~~~a~~i~~~Lr~~Girv~~D-~~~~--~----s~g~k~~~ae~~GvP~~iiIG~~E~~~~~V~v~~r~~~~k~~v~ 294 (404)
+-.++.|.++.+.|++.|+.|.+- .|++ . ++..+...|+..++-+.|-|--+-.. + ..+|.+.-+.
T Consensus 29 di~l~ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~Na~~-~------~~~G~ev~~~ 101 (180)
T 3qay_A 29 QYNKSLAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHLNASN-G------QGKGSEVLYY 101 (180)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEEECSS-S------CCCSEEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeeeCCCC-C------CCCEEEEEEE
Confidence 446788999999999999996432 2221 1 28899999999999999988755432 1 1123222222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeee-ccCHHHHHHHhcCCCEEEeecCCChhHHHHHHH
Q 015587 295 RGSLVERVKELLEEVQESLFVAAKQRRDACIQI-VKTWDEFVEALGQRKMILAPWCDEEEVEKDVKA 360 (404)
Q Consensus 295 ~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~pwc~~~~~e~~ik~ 360 (404)
-.+ =+.+-..||++|-+. +.++=+. -.++--++..---.=++.+.|....+-+..+..
T Consensus 102 ~~~----s~~lA~~i~~~l~~~----~~~rGvk~~~~~~vLr~t~~PavLvE~gFisN~~d~~~L~~ 160 (180)
T 3qay_A 102 SNK----GLEYATRICDKLGTV----FKNRGAKLDKRLYILNSSKPTAVLIESFFCDNKEDYDKAKK 160 (180)
T ss_dssp SHH----HHHHHHHHHHHHTTT----SCEEEEEECSCCHHHHSCSSEEEEEEEEETTCHHHHHHHHH
T ss_pred Cch----HHHHHHHHHHHHHHH----hccCCcccCCCeEEEcCCCCCEEEEEecccCCHHHHHHHHH
Confidence 111 122333456666332 2333332 233432221100011677788888777777765
No 106
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=21.47 E-value=3.9e+02 Score=22.91 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=40.3
Q ss_pred eEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeC-CCCCChhHHHHH---HHHcCCCEEEEECcc
Q 015587 208 QVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDF-RDNYSPGWKYSH---WEMKGVPLRIEIGPK 273 (404)
Q Consensus 208 qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~-~~~~s~g~k~~~---ae~~GvP~~iiIG~~ 273 (404)
.|.|+.-+ ......+.+.+..|+..|+..++-. +-.+++..-..+ ++..|+++.|.+...
T Consensus 9 ~V~IimgS------~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~ 72 (174)
T 3lp6_A 9 RVGVIMGS------DSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGG 72 (174)
T ss_dssp SEEEEESC------GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEES
T ss_pred eEEEEECc------HHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCc
Confidence 46666533 2346788889999999999887765 345566666555 456899966555443
No 107
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=20.88 E-value=4.3e+02 Score=23.17 Aligned_cols=143 Identities=13% Similarity=0.069 Sum_probs=71.9
Q ss_pred CceEEEEEecCCCCChhhHHHHHHHHHHHHhhCCCEEEEeCCCCCChhHH----HHHHHHcCCCE-EEEECccccCCCe-
Q 015587 206 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWK----YSHWEMKGVPL-RIEIGPKDLANDQ- 279 (404)
Q Consensus 206 p~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~s~g~k----~~~ae~~GvP~-~iiIG~~E~~~~~- 279 (404)
.++|.|---+. +.-...+..|...|...||++-+|+++ ..+|.. +..|-. +..+ ++++-++-+.+.-
T Consensus 35 ~yDVFISfrg~-----D~r~~Fv~~L~~aL~~~GI~~f~D~~e-l~~G~~I~~~l~~aIe-~Sri~IvV~S~nYa~S~WC 107 (204)
T 3ozi_A 35 EYEVFLSFRGP-----DTREQFTDFLYQSLRRYKIHTFRDDDE-LLKGKEIGPNLLRAID-QSKIYVPIISSGYADSKWC 107 (204)
T ss_dssp CCCEEEEECHH-----HHTTTHHHHHHHHHHHTTCCEEEEETT-TCCGGGTTTTHHHHHH-HCSEEEEEECTTGGGCHHH
T ss_pred CCeEEEecccc-----CCCHHHHHHHHHHHHHCCCcEEEeCCc-cCCCCchHHHHHHHHH-hCcEeeEEEEcccccCcHH
Confidence 47888755331 111245678999999999999999865 355553 334322 2233 3444443222110
Q ss_pred ----EEEEE-CC-CCceeeechh-h-HHHHHHHHHHHHHHHHHHHHHHHHHcCee--eccCHHHHHHHhcC-CCEEEeec
Q 015587 280 ----VRAVR-RD-NGAKIDLPRG-S-LVERVKELLEEVQESLFVAAKQRRDACIQ--IVKTWDEFVEALGQ-RKMILAPW 348 (404)
Q Consensus 280 ----V~v~~-r~-~~~k~~v~~~-e-l~~~i~~~l~~~~~~l~~~a~~~~~~~~~--~~~~~~e~~~~~~~-~~~~~~pw 348 (404)
+.+.. +. .+.+..+|+- + =...|+ -|..-|.+|.+..+.+.. .+..|-++...+.+ .|+.+-.|
T Consensus 108 l~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr-----~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~ 182 (204)
T 3ozi_A 108 LMELAEIVRRQEEDPRRIILPIFYMVDPSDVR-----HQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKN 182 (204)
T ss_dssp HHHHHHHHHHHHHCTTSEECCEEESSCHHHHH-----HTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred HHHHHHHHHHHHhcCCeeeEEEEeecCHHHHH-----hccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCC
Confidence 00000 00 1122222221 0 001111 244556666666555432 35667777666654 56888888
Q ss_pred CCChhHHHHHHH
Q 015587 349 CDEEEVEKDVKA 360 (404)
Q Consensus 349 c~~~~~e~~ik~ 360 (404)
+.+.+--++|-+
T Consensus 183 ~~e~~~i~~Iv~ 194 (204)
T 3ozi_A 183 DKQGAIADKVSA 194 (204)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 765555455433
No 108
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=20.30 E-value=2.2e+02 Score=25.42 Aligned_cols=53 Identities=9% Similarity=-0.085 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHhhCC-CEEEEe---CCCCCChhHHHHHHHHcCCCEEEEECcccc
Q 015587 222 QGIFDACTATVEKLCEAG-IRANSD---FRDNYSPGWKYSHWEMKGVPLRIEIGPKDL 275 (404)
Q Consensus 222 ~~~~~~a~~i~~~Lr~~G-irv~~D---~~~~~s~g~k~~~ae~~GvP~~iiIG~~E~ 275 (404)
+-.++.|.++.+.|++.| +.|.+. |.. .++..+...|+..|+-+.|-|--+-.
T Consensus 30 ~~~l~ia~~l~~~L~~~g~~~V~~tR~~D~~-~~l~~R~~~An~~~adlfiSiH~Na~ 86 (234)
T 3ne8_A 30 DVTLAFARALRDELQKGSHTIVALTRDSDIF-LRLSERVKKAQEFDADLFISIHADTI 86 (234)
T ss_dssp HHHHHHHHHHHHHHHHSSSEEEEESCSSSCC-CCHHHHHHHHHHTTCSEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEeCCCCCc-CCHHHHHHHHHhhCCCEEEEEecCCC
Confidence 345678999999999998 999874 333 57999999999999999999876543
No 109
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=20.16 E-value=50 Score=24.60 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=20.2
Q ss_pred cCeeeccCHHHHHHHhcC----CCEE----EeecCCC
Q 015587 323 ACIQIVKTWDEFVEALGQ----RKMI----LAPWCDE 351 (404)
Q Consensus 323 ~~~~~~~~~~e~~~~~~~----~~~~----~~pwc~~ 351 (404)
..+..++|.++|.+.+.. ++.+ -+|||+.
T Consensus 4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~ 40 (113)
T 1ti3_A 4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPP 40 (113)
T ss_dssp CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHH
T ss_pred CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHH
Confidence 457788888888888853 5533 4688854
Done!