BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015588
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 149/409 (36%), Positives = 217/409 (53%), Gaps = 48/409 (11%)
Query: 2 RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTL 61
+ WQS + +E GV P +GF+ DH GT+I G+ FD G RH A +LL N + L +
Sbjct: 152 QSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRV 211
Query: 62 LLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121
+HASV K++F A GV++RD+ G H+A++++ K E+IVSAG +G+PQLL+
Sbjct: 212 GVHASVEKIIF--SNAPGLTATGVIYRDSNGTPHQAFVRS--KGEVIVSAGTIGTPQLLL 267
Query: 122 LSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSY 173
LSG + NI VVL P VGQ + DNP N I + P P+E +++ V+GI+ +
Sbjct: 268 LSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN--DF 325
Query: 174 IEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGG 233
+ + F+ + +G F P P L + F
Sbjct: 326 YQCS----FSSLPFTTPPFGFF-----------PSSSYP------------LPNSTF--A 356
Query: 234 FILEKVMGPVSTGHLELR-TRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXX 292
KV GP+S G L L+ + N +P+V FNY+ DL CV G
Sbjct: 357 HFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALK 416
Query: 293 XXXYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH 352
E + N+ LP+ + E FCR++V + WHYHGGC VGKV+D
Sbjct: 417 PYKVEDLPGVEGFNILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDG 472
Query: 353 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 401
D++V G++ALRV+DGSTF Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 473 DFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 248 bits (633), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 149/409 (36%), Positives = 217/409 (53%), Gaps = 48/409 (11%)
Query: 2 RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTL 61
+ WQS + +E GV P +GF+ DH GT+I G+ FD G RH A +LL N + L +
Sbjct: 152 QSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRV 211
Query: 62 LLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121
+HASV K++F A GV++RD+ G H+A++++ K E+IVSAG +G+PQLL+
Sbjct: 212 GVHASVEKIIF--SNAPGLTATGVIYRDSNGTPHQAFVRS--KGEVIVSAGTIGTPQLLL 267
Query: 122 LSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSY 173
LSG + NI VVL P VGQ + DNP N I + P P+E +++ V+GI+ +
Sbjct: 268 LSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN--DF 325
Query: 174 IEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGG 233
+ + F+ + +G F P P L + F
Sbjct: 326 YQCS----FSSLPFTTPPFGFF-----------PSSSYP------------LPNSTF--A 356
Query: 234 FILEKVMGPVSTGHLELR-TRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXX 292
KV GP+S G L L+ + N +P+V FNY+ DL CV G
Sbjct: 357 HFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALK 416
Query: 293 XXXYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH 352
E + N+ LP+ + E FCR++V + WHYHGGC VGKV+D
Sbjct: 417 PYKVEDLPGVEGFNILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDG 472
Query: 353 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 401
D++V G++ALRV+DGSTF Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 473 DFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 149/408 (36%), Positives = 213/408 (52%), Gaps = 47/408 (11%)
Query: 2 RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTL 61
+ WQS + +E GVLP NGF+ DH GT++ G+ FD NG RH + +LL +P+ L +
Sbjct: 152 QAWQSLTKTAFLEAGVLPDNGFSLDHEAGTRLTGSTFDNNGTRHASDELLNKGDPNNLRV 211
Query: 62 LLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121
+HASV K++F + A GV+++D+ G H+A+++ + E+IVSAG +GSPQLL+
Sbjct: 212 AVHASVEKIIFS-SNSSGVTAIGVIYKDSNGTPHQAFVRG--EGEVIVSAGPIGSPQLLL 268
Query: 122 LSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSY 173
LSG + NI VVL P VGQ + DNP N I + P P+E S + V+GIT
Sbjct: 269 LSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPSTVTVLGITS---- 324
Query: 174 IEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGG 233
NF S S + +PP P L + F
Sbjct: 325 -------NFYQCSFSSLPF-----------SIPPFAFFPNP-------TYPLPNSTF--A 357
Query: 234 FILEKVMGPVSTGHLELRT-RNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXX 292
+ KV GP+S G + L + + P+V FNY+ DL CV G
Sbjct: 358 HFVNKVPGPLSYGSITLNSDSDVRVAPNVKFNYYSNSTDLAHCVSGMKKIGELLSSDALK 417
Query: 293 XXXYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH 352
E + ++ LP + + E FCR+ V + WHYHGGC VG+V+D
Sbjct: 418 PYKVEDLPGIDGFDILGIP----LPENQTDDAAFETFCREAVASYWHYHGGCLVGEVLDG 473
Query: 353 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 400
D++V G++ALRV+DGSTF YSP ++PQ +MLGRY+G +IL ER A+
Sbjct: 474 DFRVTGINALRVVDGSTFPYSPASHPQGFYLMLGRYVGSKILQERSAA 521
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 122/313 (38%), Gaps = 63/313 (20%)
Query: 104 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 155
+NE+++S GA+ +P+LLMLSG H I V++D P VG+ + D+P + +
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 156 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG-QLSKVPPKQRTPEA 214
P+ Q I F +P + G+ P + VP T
Sbjct: 322 PMVAESTQWWEIGIF-----------------TPTEDGLDRPDLMMHYGSVPFDMNTLRH 364
Query: 215 IAEAIENMKALDDPAFRGGFILE-KVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE--D 271
EN GF L V S G + LR+R+ D P V YF +PE D
Sbjct: 365 GYPTTEN-----------GFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHD 413
Query: 272 LQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPR-HSNASTSLEQFC 330
++ V G E + P + T L P + L+ +
Sbjct: 414 MRVMVAGIRKAR-------------EIAAQPAMAEWTGR---ELSPGVEAQTDEELQDYI 457
Query: 331 RDTVMTIWHYHGGCQVGKV------VDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMM 384
R T T++H G ++G V +D + +V GV LRV D S NP TVMM
Sbjct: 458 RKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMM 517
Query: 385 LGRYMGVRILSER 397
+G I S R
Sbjct: 518 IGERCADLIRSAR 530
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 122/313 (38%), Gaps = 63/313 (20%)
Query: 104 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 155
+NE+++S GA+ +P+LLMLSG H I V++D P VG+ + D+P + +
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 156 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG-QLSKVPPKQRTPEA 214
P+ Q I F +P + G+ P + VP T
Sbjct: 322 PMVAESTQWWEIGIF-----------------TPTEDGLDRPDLMMHYGSVPFDMNTLRH 364
Query: 215 IAEAIENMKALDDPAFRGGFILE-KVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE--D 271
EN GF L V S G + LR+R+ D P V YF +PE D
Sbjct: 365 GYPTTEN-----------GFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHD 413
Query: 272 LQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPR-HSNASTSLEQFC 330
++ V G E + P + T L P + L+ +
Sbjct: 414 MRVMVAGIRKAR-------------EIAAQPAMAEWTGR---ELSPGVEAQTDEELQDYI 457
Query: 331 RDTVMTIWHYHGGCQVGKV------VDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMM 384
R T T++H G ++G V +D + +V GV LRV D S NP TVMM
Sbjct: 458 RKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMM 517
Query: 385 LGRYMGVRILSER 397
+G I S R
Sbjct: 518 IGERCADLIRSAR 530
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 121/313 (38%), Gaps = 63/313 (20%)
Query: 104 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 155
+NE+++S GA+ +P+LLMLSG H I V++D P VG+ + D+P + +
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 156 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG-QLSKVPPKQRTPEA 214
P+ Q I F +P + G+ P + VP T
Sbjct: 322 PMVAESTQWWEIGIF-----------------TPTEDGLDRPDLMMHYGSVPFDMNTLRH 364
Query: 215 IAEAIENMKALDDPAFRGGFILE-KVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE--D 271
EN GF L V S G + LR+R+ D P V YF +PE D
Sbjct: 365 GYPTTEN-----------GFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHD 413
Query: 272 LQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPR-HSNASTSLEQFC 330
++ V G E + P + T L P + L+ +
Sbjct: 414 MRVMVAGIRKAR-------------EIAAQPAMAEWTGR---ELSPGVEAQTDEELQDYI 457
Query: 331 RDTVMTIWHYHGGCQVGKV------VDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMM 384
R T T +H G ++G V +D + +V GV LRV D S NP TVMM
Sbjct: 458 RKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMM 517
Query: 385 LGRYMGVRILSER 397
+G I S R
Sbjct: 518 IGERCADLIRSAR 530
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 20/159 (12%)
Query: 235 ILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXX 294
+ ++ PV+ G ++L T NP D P + Y D+ +Q
Sbjct: 412 VTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADF 471
Query: 295 XYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK------ 348
P + R ++E + RD TI+H G +
Sbjct: 472 VIR--------------PFDPRLRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWG 517
Query: 349 VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGR 387
VVD D KV GVD LR++DGS ++P + Q + ++G+
Sbjct: 518 VVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGK 556
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 41 NGQRHTAADLLEYANPS----GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHR 96
NGQR +++ Y P+ L++L++A V K++ P V + + GA
Sbjct: 203 NGQRSSSS--TAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTT 260
Query: 97 AYLKNGPKNEIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSD 143
K E+++SAG++G+P LL LSG + I +++ P VG+ +SD
Sbjct: 261 TVCA---KKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSD 312
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/349 (20%), Positives = 122/349 (34%), Gaps = 95/349 (27%)
Query: 106 EIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNP------------ 145
E+I+S G +P+LLMLSG H I ++D VGQ + D+P
Sbjct: 261 EVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGVPFVLRVKDGF 320
Query: 146 -MNAIFVP---------------SPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSP 189
M+ + + PV L+++VG + Y+E + A +
Sbjct: 321 GMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELVGFPRIDKYLEKDAEYRKAKAANGG 380
Query: 190 RDYGMFSPKIGQ----LSKVP----------PKQRTPEAIAEAIENMKALDDPAFRGGFI 235
+D FSP +GQ L V P +T + + ++ ++ + DP
Sbjct: 381 KD--PFSP-LGQPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDP------- 430
Query: 236 LEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXX 295
G + L + +P P++ N+F D+ +G
Sbjct: 431 ----------GEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDLLFKGEGFKDL 480
Query: 296 YES---MSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK---- 348
ES +P+ ++ + + D T +H G ++ K
Sbjct: 481 VESEYPWEMPL-----------------DSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQ 523
Query: 349 -VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 396
VVD KV G+ LRV D S P Q +V +G I +E
Sbjct: 524 GVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAE 572
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 318 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 377
R+ T L+ F D +H GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 378 PQATVMMLGRYMGVRILSERLASN 401
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 318 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 377
R+ T L+ F D +H GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 378 PQATVMMLGRYMGVRILSERLASN 401
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 318 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 377
R+ T L+ F D +H GGC +GK D +V G L V DGS S G N
Sbjct: 422 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 478
Query: 378 PQATVMMLGRYMGVRILSE 396
P T+ L RI+ +
Sbjct: 479 PFVTITALAERNVERIIKQ 497
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 318 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 377
R+ T L+ F D +H GGC +GK D +V G L V DGS S G +
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVD 480
Query: 378 PQATVMMLGRYMGVRILSERLASN 401
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 82/200 (41%), Gaps = 11/200 (5%)
Query: 7 AVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD--LLEYANPSGLTLLLH 64
A+ + + +GV F H G + D+N R AA LL S L +L
Sbjct: 192 ALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTG 251
Query: 65 ASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124
V KVLF+ + + P A GV F G K+E++++AG+ SP +L SG
Sbjct: 252 QMVGKVLFK-QTASGPQAVGVNF----GTNKAVNFDVFAKHEVLLAAGSAISPLILEYSG 306
Query: 125 AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAG 184
+ VLDQ V Q + D P+ S G Q + A E F
Sbjct: 307 I-GLKSVLDQANVTQ-LLDLPVGINMQDQTTTTVSSRASSAGAGQGQAVFFANFTETFGD 364
Query: 185 GSPSPRDYGMFSPKIGQLSK 204
+P RD + + K+ Q ++
Sbjct: 365 YAPQARD--LLNTKLDQWAE 382
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 338 WHYHGGC-----QVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVR 392
WH C ++G VVD KV G LRVIDGS P T + VM + M ++
Sbjct: 519 WHAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSI----PPTQVSSHVMTIFYGMALK 574
Query: 393 I 393
+
Sbjct: 575 V 575
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 318 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 377
R+ T L+ F D ++ GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YNPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 378 PQATVMMLGRYMGVRILSERLASN 401
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 318 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 377
R+ T L+ F D + GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 378 PQATVMMLGRYMGVRILSERLASN 401
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 318 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 377
R+ T L+ F D + GGC +GK D +V G L V DGS S G N
Sbjct: 426 RYDLFGTQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 482
Query: 378 PQATVMMLGRYMGVRILSERLASN 401
P T+ L RI+ + + ++
Sbjct: 483 PFVTITALAERNVERIIKQDVTAS 506
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 318 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 377
R+ T L+ F D + GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 378 PQATVMMLGRYMGVRILSERLASN 401
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 314 NLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGST 369
LLP N++ ++ F +V+T H G C++GK VVD + ++ +D L V+D S
Sbjct: 437 ELLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGKDPDAVVDANLRLKALDNLFVVDASI 496
Query: 370 F 370
Sbjct: 497 M 497
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 105 NEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNA 148
++I++ AGAL SP LLM SG A + ++D P +G+ + D+ + A
Sbjct: 261 DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGA 312
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 318 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 377
R+ T L+ F D +H GGC +GK D +V G L V DGS S G
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVL 480
Query: 378 PQATVMMLGRYMGVRILSERLASN 401
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 69/177 (38%), Gaps = 19/177 (10%)
Query: 50 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIV 109
L Y P+ L +L V KVL G P A GV F G H Y K+E+++
Sbjct: 234 LPNYQRPN-LQVLTGQYVGKVLLSQNGTT-PRAVGVEFGTHKGNTHNVY----AKHEVLL 287
Query: 110 SAGALGSPQLLMLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQ 169
+AG+ SP +L SG +++ +PL + D P+ S I G Q
Sbjct: 288 AAGSAVSPTILEYSGIGMKSIL--EPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQ 345
Query: 170 FGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAE-AIENMKAL 225
+ A E F G +S K +L +Q EA+A N AL
Sbjct: 346 GQAAWFATFNETF----------GDYSEKAHELLNTKLEQWAEEAVARGGFHNTTAL 392
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 339 HYHG--GC-----QVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGV 391
+YHG C ++G VVD+ +V GV LRVIDGS P T + VM + M +
Sbjct: 514 NYHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSI----PPTQMSSHVMTVFYAMAL 569
Query: 392 RI 393
+I
Sbjct: 570 KI 571
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 339 HYHGGCQVGK-----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
H+ +G VVD + KV G + L ++D + P NPQ T+M +I
Sbjct: 480 HWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 539
Query: 394 LS 395
L+
Sbjct: 540 LA 541
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 349 VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILS 395
VVD + KV G + L ++D + P NPQ T+M +IL+
Sbjct: 490 VVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILA 536
>pdb|3K1Q|A Chain A, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|W Chain W, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1299
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 309 ASAPVNLLPRHSNASTSLEQ---FCRDTVMT-IWHYHGGCQVGKVVDHDYKVLG 358
AS P+ LLP++ NA+ +++Q DT ++ + HG C G V Y + G
Sbjct: 394 ASRPLRLLPQYRNATITVQQADDAYEDTALSPLITTHGFCVTGGVFTSIYDISG 447
>pdb|1IAG|A Chain A, First Structure Of A Snake Venom Metalloproteinase: A
Prototype For Matrix
Metalloproteinases(Slash)collagenases
Length = 202
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 296 YESMSVPI-LVNMTASAPVNLLPRHSNASTSLEQF--CRDTVMTIWHYHGGCQVGKVVDH 352
Y S+++ + L ++ + + + S++S +L F R+ V+ IW H Q+ ++
Sbjct: 44 YRSLNIRVSLTDLEIWSGQDFITIQSSSSNTLNSFGEWRERVLLIWKRHDNAQLLTAINF 103
Query: 353 DYKVLGVDALRVIDGSTFYYSPGTNPQATV 382
+ K++G Y S NP+++V
Sbjct: 104 EGKIIG----------KAYTSSMCNPRSSV 123
>pdb|2O8S|A Chain A, X-ray Crystal Structure Of Protein Agr_c_984 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr120.
pdb|2O8S|B Chain B, X-ray Crystal Structure Of Protein Agr_c_984 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr120
Length = 323
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 159 VSLIQVVGITQFGSYIEAASGENFAGGSPSP--RDYGMFSPKIGQ----LSKVPPKQRTP 212
VS Q + + G SG N +GGS + Y + S IG+ +SK P R
Sbjct: 26 VSHKQAATLCRQGRTCALKSGSNESGGSVTSTYTSYRLISQDIGKSLERVSKQPDVARET 85
Query: 213 EAIAEAIENMKALDD 227
E E I ++K++DD
Sbjct: 86 EYYREKIGSVKSIDD 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,456,893
Number of Sequences: 62578
Number of extensions: 527141
Number of successful extensions: 1179
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1124
Number of HSP's gapped (non-prelim): 42
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)