BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015588
(404 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1
Length = 594
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/408 (54%), Positives = 282/408 (69%), Gaps = 15/408 (3%)
Query: 4 WQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLL 63
WQ A+RD L+EVGV P+NGFTYDH+ GTKIGGTIFD+ G+RHTAA+LL YANP L +L+
Sbjct: 187 WQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQKLRVLI 246
Query: 64 HASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 123
+A+V K++F G RP GV+F+D G +H+A L N +E+I+S+GA+GSPQ+LMLS
Sbjct: 247 YATVQKIVFDTSG-TRPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSPQMLMLS 305
Query: 124 GAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIE 175
G I VVL+ VG+GM+DNPMN I VPS P+E SLIQ VGIT+ G Y+E
Sbjct: 306 GIGPKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQSLIQTVGITKMGVYVE 365
Query: 176 AASGENFAGGSPSP--RDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGG 233
A++G G SP YG+ S K S +P KQR PEA I K AF G
Sbjct: 366 ASTG---FGQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKYQLHEAFNGS 422
Query: 234 FILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSK 293
FILEK+ P+S GHL L N +DNPSVTFNYFK P DLQRCV+ I + K++ S F
Sbjct: 423 FILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLN 482
Query: 294 F-KYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH 352
+ + + +V +++++ A +NL P+ N + S+ QFC+DTV+TIWHYHGGC VGKVV
Sbjct: 483 YTQCDKQNVHKMLSLSVKANINLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLVGKVVSP 542
Query: 353 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 400
+ KVLGVD LRVIDGSTF SPGTNPQAT+MM+GRYMGV+IL ERL +
Sbjct: 543 NRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKILRERLGN 590
>sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050
PE=2 SV=1
Length = 552
Score = 317 bits (812), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 184/411 (44%), Positives = 245/411 (59%), Gaps = 50/411 (12%)
Query: 1 MRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLT 60
+R WQ+A+RD L+EVGV P+NGFT +H GTKIGG+ FD+ G+RH++ADLL YA S +
Sbjct: 178 LRTWQTAIRDALLEVGVHPFNGFTLEHKVGTKIGGSTFDRTGRRHSSADLLRYARSSNIR 237
Query: 61 LLLHASVHKVLF----RIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 116
+ ++A+V +VL + G + A GVV+RD G H A +++ + E+I+SAGALGS
Sbjct: 238 VAVYATVERVLLASSPSVSG-SNVSAIGVVYRDQLGRFHHALIRD--RGEVILSAGALGS 294
Query: 117 PQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGIT 168
PQLL LSG I V LDQP VG + DNP N I + PVP+E SLIQVVG+T
Sbjct: 295 PQLLFLSGIGPRSYLSTWGIPVALDQPHVGDFVYDNPRNGISIVPPVPMENSLIQVVGVT 354
Query: 169 QFGSYIEAASGE-NFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDD 227
+ G+++EAAS FA SP + P +P +
Sbjct: 355 EDGAFLEAASNVIPFA------------SPLHSVFIRAPA---SPLYVPVTT-------- 391
Query: 228 PAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIE 287
I+EK++GPVS G L L + + NP V FNYF +P+DL+RCV G I +I+
Sbjct: 392 -------IMEKILGPVSIGLLRLASTDVRINPVVRFNYFSDPQDLERCVNGTRKIGEILR 444
Query: 288 SKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG 347
S++ F AP LP + + FCR TV TIWHYHGG VG
Sbjct: 445 SRAMQDFMIREWFGNRRFRFVG-AP---LPVDQSNDLVMADFCRRTVSTIWHYHGGAVVG 500
Query: 348 KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERL 398
KVVD D KV+GV++LR++DGSTF SPGTNPQAT+MMLGRYMG+++L ER+
Sbjct: 501 KVVDSDLKVIGVNSLRLVDGSTFNISPGTNPQATLMMLGRYMGLKMLRERM 551
>sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1
Length = 563
Score = 266 bits (679), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/407 (38%), Positives = 222/407 (54%), Gaps = 48/407 (11%)
Query: 4 WQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLL 63
WQS +E GV P +GF+ DH GT+I G+ FD G RH A +LL N + L + +
Sbjct: 181 WQSVTGTAFLEAGVDPNHGFSLDHEAGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGV 240
Query: 64 HASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 123
HASV K++F A GV++RD+ G HRA++++ K E+IVSAG +G+PQLL+LS
Sbjct: 241 HASVEKIIF--SNAPGLTATGVIYRDSNGTPHRAFVRS--KGEVIVSAGTIGTPQLLLLS 296
Query: 124 G--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIE 175
G + NI VVL P VGQ + DNP N I + P P+E +++ V+GI+
Sbjct: 297 GVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN------ 350
Query: 176 AASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFI 235
+F S S + PP P L + F
Sbjct: 351 -----DFYQCSFSSLPF-----------TTPPFSFFPST-------SYPLPNSTF--AHF 385
Query: 236 LEKVMGPVSTGHLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKF 294
KV GP+S G L L++ N +P+V FNY+ P DL CV G+ I +++ + + +
Sbjct: 386 ASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNPTDLSHCVSGMKKIGELLSTDALKPY 445
Query: 295 KYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDY 354
K E + N+ LP+ + E FCR++V + WHYHGGC VGKV+D D+
Sbjct: 446 KVEDLPGIEGFNILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDF 501
Query: 355 KVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 401
+V G+DALRV+DGSTF Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 502 RVTGIDALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 548
>sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1
Length = 563
Score = 262 bits (669), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 153/409 (37%), Positives = 224/409 (54%), Gaps = 48/409 (11%)
Query: 2 RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTL 61
+ WQS + +E GV P +GF+ DH GT+I G+ FD G RH A +LL N + L +
Sbjct: 179 QSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRV 238
Query: 62 LLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121
+HASV K++F A GV++RD+ G H+A++++ K E+IVSAG +G+PQLL+
Sbjct: 239 GVHASVEKIIF--SNAPGLTATGVIYRDSNGTPHQAFVRS--KGEVIVSAGTIGTPQLLL 294
Query: 122 LSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSY 173
LSG + NI VVL P VGQ + DNP N I + P P+E +++ V+GI+
Sbjct: 295 LSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN---- 350
Query: 174 IEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGG 233
+F S S + PP P A L + F
Sbjct: 351 -------DFYQCSFSSLPF-----------TTPPFGFFPSA-------SYPLPNSTF--A 383
Query: 234 FILEKVMGPVSTGHLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFS 292
KV GP+S G L L++ N +P+V FNY+ DL CV G+ I +++ + +
Sbjct: 384 HFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALK 443
Query: 293 KFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH 352
+K E + N+ LP+ + E FCR++V + WHYHGGC VGKV+D
Sbjct: 444 PYKVEDLPGVEGFNILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDG 499
Query: 353 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 401
D++V G++ALRV+DGSTF Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 500 DFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 548
>sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1
Length = 576
Score = 259 bits (661), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 154/409 (37%), Positives = 227/409 (55%), Gaps = 47/409 (11%)
Query: 4 WQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLL 63
WQ+ +EVG+LP NGF+ DH+ GT++ G+ FD NG RH + +LL +P+ L + +
Sbjct: 182 WQNLTGTAFLEVGILPDNGFSLDHLEGTRLTGSTFDNNGTRHASDELLNKGDPNNLRVAV 241
Query: 64 HASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 123
HA+V K++F + A GV++ D+ G H+A+++ E+I+SAG +GSPQLL+LS
Sbjct: 242 HAAVEKIIFS-SDSSGVTAIGVIYTDSNGTTHQAFVRG--DGEVILSAGPIGSPQLLLLS 298
Query: 124 G--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIE 175
G + NI+VV P VGQ + DNP N I + P P+E S + V+GIT Y
Sbjct: 299 GVGLESYLTSLNISVVASHPYVGQYIYDNPRNFINILPPNPIEASTVTVLGITS-DFYQC 357
Query: 176 AASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFI 235
+ S F S +P +G F P P L + F I
Sbjct: 358 SISSLPF---STAP--FGFF-----------PNPTYP------------LPNTTF--AHI 387
Query: 236 LEKVMGPVSTGHLELR-TRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKF 294
+ KV GP+S G + L+ T + P+VTFNY+ DL CV G+ I + + S + +
Sbjct: 388 VNKVPGPLSHGTVLLQSTSDVRVAPNVTFNYYSNTTDLAHCVSGMKKIGEFLSSDALKPY 447
Query: 295 KYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDY 354
K E + ++ LP + + E FCR+ V + WHYHGGC VG+V+D D+
Sbjct: 448 KVEDLPGIEGFDILGIP----LPENQTDDAAFETFCREAVASYWHYHGGCLVGEVLDDDF 503
Query: 355 KVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDS 403
+V G++ALRV+DGSTF +P ++PQ +MLGRYMG +IL ERLAS ++
Sbjct: 504 RVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGTKILQERLASEEA 552
>sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1
Length = 573
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 146/411 (35%), Positives = 223/411 (54%), Gaps = 47/411 (11%)
Query: 2 RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTL 61
+ WQ+ + +E G+LP NGF+ DH+ GT++ G+ FD NG RH + +LL +P+ L +
Sbjct: 179 QTWQTVIGTAYLEAGILPNNGFSVDHLAGTRLTGSTFDNNGTRHASDELLNKGDPNNLRV 238
Query: 62 LLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121
+ A+V K++F + A GV++ D+ G H+A+++ + E+I+SAG +GSPQLL+
Sbjct: 239 AVQAAVEKIIFS-SNTSGVTAIGVIYTDSNGTTHQAFVRG--EGEVILSAGPIGSPQLLL 295
Query: 122 LSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSY 173
LSG + NI+VV P VGQ + DNP N I + P P+E S + V+GIT
Sbjct: 296 LSGVGPESYLTSLNISVVASHPYVGQYIYDNPRNFINILPPNPIEASTVTVLGITS---- 351
Query: 174 IEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGG 233
+F S S + PP P L + F
Sbjct: 352 -------DFYQCSISSLPF-----------DTPPFSFFPTT-------SYPLPNQTF--A 384
Query: 234 FILEKVMGPVSTGHLELRTRNP-NDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFS 292
I+ KV GP+S G + L + + P+V FNY+ DL CV G+ + +++ + +
Sbjct: 385 HIVNKVPGPLSHGTVTLNSSSDVRVGPNVKFNYYSNLTDLSHCVSGMKKLGEVLSTDALE 444
Query: 293 KFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH 352
+K E + N+ LP + + E FCR++V + WHYHGGC VGKV+D
Sbjct: 445 PYKVEDLPGIDGFNILGIP----LPENQTDDAAFETFCRESVASYWHYHGGCLVGKVLDD 500
Query: 353 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDS 403
++V G++ALRV+DGSTF +P ++PQ +MLGRYMG++IL ER AS D+
Sbjct: 501 GFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGIQILQERSASEDA 551
>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1
Length = 574
Score = 245 bits (626), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 149/411 (36%), Positives = 218/411 (53%), Gaps = 47/411 (11%)
Query: 2 RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTL 61
+ WQS +E GV P NGF H GT++ G+ FD +G RH + +LL +P L +
Sbjct: 180 QSWQSITGTAFLEAGVHPDNGFGLVHEEGTRLTGSTFDNSGTRHASDELLNKGDPDNLKV 239
Query: 62 LLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121
+ A+V K++F + A GVV+ D+ G HRA + K E+I+SAG LG+PQLL+
Sbjct: 240 AVEAAVQKIIFSTESSGL-TAVGVVYTDSNGTSHRALVSG--KGEVILSAGTLGTPQLLL 296
Query: 122 LSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSY 173
LSG + NI+VV P VGQ ++DNP N I + P P+E S + V+GIT
Sbjct: 297 LSGVGPESYLTSLNISVVASHPYVGQYVNDNPRNFINILPPNPIEPSTVTVLGITS---- 352
Query: 174 IEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGG 233
+F S S + PP P L + F
Sbjct: 353 -------DFYQCSLSSLPF-----------DTPPFSLFPTT-------SYPLPNQTF--A 385
Query: 234 FILEKVMGPVSTGHLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFS 292
I+ KV GP+S G L L++ N + P+V FNY +P DL CV G+ I + + +
Sbjct: 386 HIVSKVPGPLSAGSLTLQSSSNVSVAPNVKFNYCSDPVDLTHCVSGMKKIGVFLSTDALK 445
Query: 293 KFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH 352
+K + + N+ + LP + + E+FCRDTV + WHYHGG VGKV+D
Sbjct: 446 PYKVDDLPGIDGFNILGTP----LPENQTDDAAFEKFCRDTVASYWHYHGGAIVGKVIDG 501
Query: 353 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDS 403
+++V G++ALRV+DGSTF +P ++PQ +MLGRY+G +I+ ER AS ++
Sbjct: 502 NFRVTGINALRVVDGSTFPATPASHPQGFYLMLGRYVGTKIVQERSASGEA 552
>sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1
Length = 559
Score = 241 bits (616), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 148/415 (35%), Positives = 215/415 (51%), Gaps = 67/415 (16%)
Query: 2 RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTL 61
+ WQS + +G +E G+LP NGF+ DH GT++ G+ FD NG RH A +LL +P+ L +
Sbjct: 179 QSWQSVIGEGFLEAGILPDNGFSLDHEAGTRLTGSTFDNNGTRHAADELLNKGDPNNLLV 238
Query: 62 LLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLK-NGPKNEIIVSAGALGSPQLL 120
+ ASV K+LF + A GV++ D+ G H+A+++ NG E+IVSAG +G+PQLL
Sbjct: 239 AVQASVEKILFS-SNTSNLSAIGVIYTDSDGNSHQAFVRGNG---EVIVSAGTIGTPQLL 294
Query: 121 MLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGS 172
+LSG + NITVV P VGQ + +NP N I P P+E S++ V+GI
Sbjct: 295 LLSGVGPESYLSSLNITVVQPNPYVGQFLYNNPRNFINNFPPNPIEASVVTVLGIRS--- 351
Query: 173 YIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRG 232
DY S S PP P L + F
Sbjct: 352 ------------------DYYQVSLSSLPFS-TPPFSLFPTT-------SYPLPNSTF-- 383
Query: 233 GFILEKVMGPVSTGHLELRTRNP-NDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSF 291
I+ +V GP+S G + L + + P++ FNY+ DL CV G+ + ++ +K+
Sbjct: 384 AHIVSQVPGPLSHGSVTLNSSSDVRIAPNIKFNYYSNSTDLANCVSGMKKLGDLLRTKAL 443
Query: 292 SKFK---------YESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHG 342
+K + + VP LP + S E FC D V + WHYHG
Sbjct: 444 EPYKARDVLGIDGFNYLGVP-------------LPENQTDDASFETFCLDNVASYWHYHG 490
Query: 343 GCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 397
G VGKV+D ++V+G+ ALRV+D STF Y P ++PQ +MLGRY+G++IL ER
Sbjct: 491 GSLVGKVLDDSFRVMGIKALRVVDASTFPYEPNSHPQGFYLMLGRYVGLQILQER 545
>sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=betA PE=3 SV=1
Length = 572
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 161/375 (42%), Gaps = 61/375 (16%)
Query: 41 NGQR-HTAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAY 98
NG+R TA L+ A P LT++ +A+ ++LF K A GVV+ D +A
Sbjct: 197 NGRRASTARGYLDQARPRPNLTIVTYATTDRILFSGK-----RAQGVVYLDG-----QAQ 246
Query: 99 LKNGPKNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGMSDN-PMNAI 149
+ + E+++ +GA+ SPQ+L SG +I VVLD P VGQ + D+ M
Sbjct: 247 ITAHARREVLLCSGAIASPQILQRSGVGPGGWLRDLDIPVVLDLPGVGQNLQDHLEMYMQ 306
Query: 150 F-VPSPVPVEVSLI----QVVGITQF--GSYIEAASGENFAGGSPSPRDYGMFSPKIGQL 202
+ PV + +L+ +GI G+ I AS AGG RD + P I Q
Sbjct: 307 YECKEPVSLYPALLLRNQPAIGIEWMLKGTGI-GASNHFEAGGFIRTRDDDPW-PNI-QY 363
Query: 203 SKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVT 262
+P +A A+ F+ M S G ++LR+R+P ++PS+
Sbjct: 364 HFLP--------VAINYNGTNAIKMHGFQAHV---GSMRSPSRGRVKLRSRDPREHPSIL 412
Query: 263 FNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNA 322
FNY E D + I +II + +F+ +S P L +
Sbjct: 413 FNYMAEALDWREFRDAIRITREIIAQPALDRFRGRELS-----------PGAEL----QS 457
Query: 323 STSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNP 378
++ F R T +H C +G VVD + +V G++ LRV+D S N
Sbjct: 458 DAQIDAFVRARAETAYHPSCSCAMGYDDMAVVDGEGRVHGLEGLRVVDASIMPRITTGNL 517
Query: 379 QATVMMLGRYMGVRI 393
A +ML + RI
Sbjct: 518 NAPTIMLAEKIADRI 532
>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA
PE=3 SV=1
Length = 553
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 161/373 (43%), Gaps = 52/373 (13%)
Query: 40 QNGQRH-TAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRA 97
+NG+R TA L+ A LT++ HA +K+LF K A GV + GA R
Sbjct: 196 KNGRRSSTARGYLDMAKERPNLTIITHAMTNKILFNGK-----QAIGVEY--IQGADKRD 248
Query: 98 YLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAI 149
K E+++ AGA+ SPQ+L SG + +I VV D P VG+ + D+ +
Sbjct: 249 LKKVMANKEVLLCAGAIASPQILQRSGVGESTFLKSMDIDVVHDLPGVGENLQDHL--EM 306
Query: 150 FVPSPVPVEVSLIQVVGITQFGSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSK 204
++ VSL + Y + A G F G G+ + + G F + +
Sbjct: 307 YLQYKCKQPVSLYPALKW-----YNQPAIGAEWLFLGKGIGASNQFEAGGFIRSSDEF-E 360
Query: 205 VPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFN 264
P Q +A A+ + F+ M S GH++L++++P ++PS+ FN
Sbjct: 361 WPNIQYHFLPVAINYNGSNAVKEHGFQAHV---GSMRSPSRGHIKLKSKDPFEHPSILFN 417
Query: 265 YFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAST 324
Y +D Q I +I+ + ++ E +S P L + T
Sbjct: 418 YMSTEQDWQEFRAAIRITREIMHQPALDPYRGEEIS-----------PGKQL----STDT 462
Query: 325 SLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQA 380
L+ F R+ T +H C++G+ VVDH +V G+ LRV+D S N A
Sbjct: 463 QLDDFVRNHAETAYHPSCSCKMGEDDMAVVDHQGRVHGLQGLRVVDASIMPLIITGNLNA 522
Query: 381 TVMMLGRYMGVRI 393
T +M+ + +I
Sbjct: 523 TTIMMAEKIADQI 535
>sp|Q7X2H8|CHOX_ARTGO Choline oxidase OS=Arthrobacter globiformis GN=codA PE=1 SV=1
Length = 546
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 125/312 (40%), Gaps = 61/312 (19%)
Query: 104 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 155
+NE+++S GA+ +P+LLMLSG H I V++D P VG+ + D+P + +
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 156 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG-QLSKVPPKQRTPEA 214
P+ Q I F +P + G+ P + VP T
Sbjct: 322 PMVAESTQWWEIGIF-----------------TPTEDGLDRPDLMMHYGSVPFDMNTLRH 364
Query: 215 IAEAIENMKALDDPAFRGGFILE-KVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE--D 271
EN GF L V S G + LR+R+ D P V YF +PE D
Sbjct: 365 GYPTTEN-----------GFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHD 413
Query: 272 LQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCR 331
++ V GI +I + +++ +S + + L+ + R
Sbjct: 414 MRVMVAGIRKAREIAAQPAMAEWTGRELSPGV---------------EAQTDEELQDYIR 458
Query: 332 DTVMTIWHYHGGCQVGKV------VDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMML 385
T T++H G ++G V +D + +V GV LRV D S NP TVMM+
Sbjct: 459 KTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMI 518
Query: 386 GRYMGVRILSER 397
G I S R
Sbjct: 519 GERCADLIRSAR 530
>sp|B4EHJ2|BETA_BURCJ Choline dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=betA PE=3 SV=1
Length = 566
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 148/360 (41%), Gaps = 69/360 (19%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVF-RDATGAKHRAYLKNGPKNEIIVSAGALGSP 117
L ++ HA ++LF GK A GV + R + A A + E++V +GA+ SP
Sbjct: 217 LEIVTHALADRILF--DGKR---ASGVTYLRGSERATAHA------RREVLVCSGAIASP 265
Query: 118 QLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------ 157
QLL SG A +I VVLD P VGQ + D+ I PV
Sbjct: 266 QLLQRSGVGPGAWLKALDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQP 325
Query: 158 EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAE 217
++ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 326 KIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAI 370
Query: 218 AIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQ 277
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 371 NYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRD 427
Query: 278 GISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTI 337
I +I+ + +++ + N A + L+ F R T
Sbjct: 428 AIRATREIMRQPALDRYRGREL------NPGADCKTD---------KELDAFVRARAETA 472
Query: 338 WHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
+H C++G VVD + +V G+D LRV+D S N A +M+ + +I
Sbjct: 473 FHPSCSCKMGYDDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|A4JJG6|BETA_BURVG Choline dehydrogenase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=betA PE=3 SV=1
Length = 566
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 147/359 (40%), Gaps = 67/359 (18%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118
L ++ HA ++LF K +A VA+ R + A A + E++V +GA+ SPQ
Sbjct: 217 LEIVTHALADRILFDGK-RASGVAY---LRGSERATAHA------RREVLVCSGAIASPQ 266
Query: 119 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 158
LL SG +I +VLD P VGQ + D+ I PV +
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 159 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 218
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 219 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 278
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDA 428
Query: 279 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 338
I +I+ + +++ + N A + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRYRGREL------NPGADC---------RSDKELDTFVRARAETAF 473
Query: 339 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
H C++G VVD + +V G+D LRV+D S N A +M+ + RI
Sbjct: 474 HPSCSCKMGYDDMAVVDDEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADRI 532
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 144/355 (40%), Gaps = 57/355 (16%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118
L ++ HA+ ++LF K +A VA+ A+ + + E+++ AGA+ SPQ
Sbjct: 214 LKIITHATTDRILFENK-RAVGVAY---LHGASNTPQEVHARR----EVLLCAGAIASPQ 265
Query: 119 LLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQV------ 164
+L SG N I VV D P VG+ + D+ +++ VSL
Sbjct: 266 ILQRSGVGNAELLKQFDIPVVHDLPGVGENLQDHL--EMYLQYECKEPVSLYPALKWWNQ 323
Query: 165 --VGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENM 222
+G + + +F GG P I Q +P +A
Sbjct: 324 PKIGAEWLFNGTGIGASNHFEGGGFIRSREEFAWPNI-QYHFLP--------VAINYNGS 374
Query: 223 KALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTI 282
A++ F+ M S GH+ +++R+P+ +P++ FNY +D Q I
Sbjct: 375 NAVEAHGFQCHV---GSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRIT 431
Query: 283 EKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHG 342
+II + KF+ +S I L++F R+ T +H G
Sbjct: 432 RQIINQPALDKFRGREISPGI---------------DCQTDEQLDEFVRNHAETAYHPCG 476
Query: 343 GCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
C++G VVD + +V G++ LRV+D S N AT +M+G + I
Sbjct: 477 TCKMGSDEMAVVDDEGRVHGLEGLRVVDASIMPLIITGNLNATTIMIGEKIADNI 531
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 126/315 (40%), Gaps = 55/315 (17%)
Query: 104 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 155
+ E+IV+A ++ SP++LMLSG + I VV D+P VG+ + D+ I S
Sbjct: 244 RREVIVAASSINSPKILMLSGIGPAEHLRENGIAVVADRPGVGRNLQDHMELYIQQESTK 303
Query: 156 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDY----------GMFSPKIGQLSKV 205
P+ ++ + + F + A F G + + G+ P I Q +
Sbjct: 304 PITLNSV----LNPFSKALIGAQWLFFKSGLGATNHFEAAAFVRSRAGVDYPDI-QYHFI 358
Query: 206 PPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNY 265
P R A +A P M S G + LR+ +P P + FNY
Sbjct: 359 PAAVRYDGKAAAKSHGFQAHVGP-----------MRSKSRGSVTLRSPDPKAKPVIRFNY 407
Query: 266 FKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTS 325
P+D I +I +F F+ + +S P + H +
Sbjct: 408 MSHPDDWTEFRHCIRLTREIFGQSAFDAFRGQEIS-----------PGS----HVQSDDD 452
Query: 326 LEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQ 379
L+ F RD + +H G C++G+ VVD + +V+GVD LRV D S F N
Sbjct: 453 LDVFIRDHAESAYHPCGTCKMGRADDVTSVVDPECRVIGVDGLRVADSSIFPRVTNGNLN 512
Query: 380 ATVMMLGRYMGVRIL 394
A +M G IL
Sbjct: 513 APSIMTGEKASDHIL 527
>sp|Q39A44|BETA_BURS3 Choline dehydrogenase OS=Burkholderia sp. (strain 383) GN=betA PE=3
SV=1
Length = 566
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 148/360 (41%), Gaps = 69/360 (19%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVF-RDATGAKHRAYLKNGPKNEIIVSAGALGSP 117
L ++ HA ++LF GK A GV + R + A A + E++V +GA+ SP
Sbjct: 217 LEIVTHALADRILF--DGKR---ASGVTYLRGSERATAHA------RREVLVCSGAIASP 265
Query: 118 QLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------ 157
QLL SG +I VVLD P VGQ + D+ I PV
Sbjct: 266 QLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQP 325
Query: 158 EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAE 217
++ L ++ T G AS AGG RD ++ P I Q +P +A
Sbjct: 326 KIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDLW-PNI-QYHFLP--------VAI 370
Query: 218 AIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQ 277
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 371 NYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRD 427
Query: 278 GISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTI 337
I +I+ + +++ + N A + L+ F R T
Sbjct: 428 AIRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDAFVRARAETA 472
Query: 338 WHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
+H C++G VVD + +V G++ LRV+D S N A +M+ + +I
Sbjct: 473 FHPSCSCKMGYDDMAVVDEEGRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|B1K707|BETA_BURCC Choline dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3)
GN=betA PE=3 SV=1
Length = 566
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 147/360 (40%), Gaps = 69/360 (19%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVF-RDATGAKHRAYLKNGPKNEIIVSAGALGSP 117
L ++ HA ++LF GK A GV + R + A A + E++V +GA+ SP
Sbjct: 217 LEIVTHALADRILF--DGKR---ASGVTYLRGSERATAHA------RREVLVCSGAIASP 265
Query: 118 QLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------ 157
QLL SG +I VVLD P VGQ + D+ I PV
Sbjct: 266 QLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQP 325
Query: 158 EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAE 217
++ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 326 KIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAI 370
Query: 218 AIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQ 277
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 371 NYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRD 427
Query: 278 GISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTI 337
I +I+ + +++ + N A + L+ F R T
Sbjct: 428 AIRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDAFVRARAETA 472
Query: 338 WHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
+H C++G VVD + +V G+D LRV+D S N A +M+ + +I
Sbjct: 473 FHPSCSCKMGYDDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|A0B2F7|BETA_BURCH Choline dehydrogenase OS=Burkholderia cenocepacia (strain HI2424)
GN=betA PE=3 SV=1
Length = 566
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 147/360 (40%), Gaps = 69/360 (19%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVF-RDATGAKHRAYLKNGPKNEIIVSAGALGSP 117
L ++ HA ++LF GK A GV + R + A A + E++V +GA+ SP
Sbjct: 217 LEIVTHALADRILF--DGKR---ASGVTYLRGSERATAHA------RREVLVCSGAIASP 265
Query: 118 QLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------ 157
QLL SG +I VVLD P VGQ + D+ I PV
Sbjct: 266 QLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQP 325
Query: 158 EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAE 217
++ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 326 KIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAI 370
Query: 218 AIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQ 277
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 371 NYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRD 427
Query: 278 GISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTI 337
I +I+ + +++ + N A + L+ F R T
Sbjct: 428 AIRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDAFVRARAETA 472
Query: 338 WHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
+H C++G VVD + +V G+D LRV+D S N A +M+ + +I
Sbjct: 473 FHPSCSCKMGYDDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|Q1BQE2|BETA_BURCA Choline dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054)
GN=betA PE=3 SV=1
Length = 566
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 147/360 (40%), Gaps = 69/360 (19%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVF-RDATGAKHRAYLKNGPKNEIIVSAGALGSP 117
L ++ HA ++LF GK A GV + R + A A + E++V +GA+ SP
Sbjct: 217 LEIVTHALADRILF--DGKR---ASGVTYLRGSERATAHA------RREVLVCSGAIASP 265
Query: 118 QLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------ 157
QLL SG +I VVLD P VGQ + D+ I PV
Sbjct: 266 QLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQP 325
Query: 158 EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAE 217
++ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 326 KIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAI 370
Query: 218 AIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQ 277
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 371 NYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRD 427
Query: 278 GISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTI 337
I +I+ + +++ + N A + L+ F R T
Sbjct: 428 AIRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDAFVRARAETA 472
Query: 338 WHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
+H C++G VVD + +V G+D LRV+D S N A +M+ + +I
Sbjct: 473 FHPSCSCKMGYDDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|Q2T6D0|BETA_BURTA Choline dehydrogenase OS=Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 / CIP 106301) GN=betA PE=3 SV=1
Length = 565
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 148/363 (40%), Gaps = 67/363 (18%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118
L ++ HA ++LF K A GV F + A + + E++V +GA+ SPQ
Sbjct: 217 LEIVTHALADRILFSGK-----RATGVTFLHGS-----ARVTAHARREVLVCSGAIASPQ 266
Query: 119 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 158
LL SG +I VVLD P VG+ + D+ I PV +
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKEPVSLYPALKWWNQPK 326
Query: 159 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 218
+ L ++ T G AS AGG RD ++ P I Q +P +A
Sbjct: 327 IGLDWMINGTGLG-----ASNHFEAGGFIRTRDDDLW-PNI-QYHFLP--------VAIN 371
Query: 219 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 278
A++ F+ M S G ++L++R+PN +PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLKSRDPNAHPSILFNYMAEALDWREFRDA 428
Query: 279 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 338
I +I+ + +F+ ++ P L + L+ F R T +
Sbjct: 429 IRATREIMHQPALDRFRGRELN-----------PGADL----KSDNELDAFVRARAETAF 473
Query: 339 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL 394
H C++G VVD++ +V G+D LRV+D S N A +M+ + +I
Sbjct: 474 HPSCSCKMGYDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKIR 533
Query: 395 SER 397
+
Sbjct: 534 KRK 536
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/383 (25%), Positives = 155/383 (40%), Gaps = 66/383 (17%)
Query: 36 TIFDQNGQRHTAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVF-----RD 89
T+ Q + TA L+ A LT++ HA+ ++LF K A GV + D
Sbjct: 192 TVTPQGRRASTARGYLDQARERPNLTIVTHATTDRILFDGK-----RASGVSYLIGNAND 246
Query: 90 ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGM 141
AT A+ R E+++ AGA+ SPQ+L SG +I +V + P VGQ +
Sbjct: 247 ATEARAR--------REVLLCAGAIASPQILQRSGVGPAALLRELDIALVHELPGVGQNL 298
Query: 142 SDNPMNAIFVPSPVPVEV----SLIQVVGITQ---FGSYIEAASGENFAGGSPSPRDYGM 194
D+ + PV + L+ GI F AS + AGG R
Sbjct: 299 QDHLEMYLQYACTQPVSLYPALKLLNQPGIGAQWLFTGNGIGASNQFEAGGFIRTRPEFA 358
Query: 195 FSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRN 254
+ P I Q +P +A A+++ F+ M S G ++L++++
Sbjct: 359 W-PNI-QFHFLP--------VAINYNGSNAVNEHGFQAHV---GSMRSPSRGRIQLKSKD 405
Query: 255 PNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVN 314
P +PS+ FNY +D Q I +I+ + ++ +S I
Sbjct: 406 PRQHPSILFNYMSHEQDWQEFRDAIRITREIMAQPALDSYRGREISPGI----------- 454
Query: 315 LLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTF 370
+ L+ F R+ T +H C++G+ VVD +V GV LRV+D S
Sbjct: 455 ----DCQSDAELDAFIREHAETAFHPSCSCKMGEDDMAVVDGQGRVHGVQGLRVVDASIM 510
Query: 371 YYSPGTNPQATVMMLGRYMGVRI 393
N AT +M+ + RI
Sbjct: 511 PEIITGNLNATTIMMAEKIADRI 533
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 159/380 (41%), Gaps = 74/380 (19%)
Query: 37 IFDQNGQRHTAA-----DLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDAT 91
+ ++GQR ++A D+++ N L ++ A KVLF + A GV +
Sbjct: 185 VTQKHGQRWSSARAFLHDVIDRPN---LDIITEAHATKVLFEDRK-----AVGVSYIQKN 236
Query: 92 GAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGA--------HNITVVLDQPLVGQGMSD 143
+ +K E+I+S GA+ +PQLLMLSG H I +V D P VG+ + D
Sbjct: 237 MHQQ---VKTTDSGEVILSLGAVNTPQLLMLSGVGAAAELKEHGIALVHDLPEVGKNLQD 293
Query: 144 NP----MNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKI 199
+ M A +P+ V S I G+ SYI G + + S
Sbjct: 294 HLDITLMCAANSRTPIGVAFSFIPR-GLVGLFSYIFKRKGFLTSNVAES----------- 341
Query: 200 GQLSKVPPKQRTPEAIAEAIENMKALDDP----AFRGGFILEKV-MGPVSTGHLELRTRN 254
G K P++ P + L D A G+ L + P S G + L++ N
Sbjct: 342 GGFVKSSPERDRPNLQFHFLPTY--LKDHGRKIAVGYGYTLHICDLLPKSRGRIGLKSAN 399
Query: 255 PNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSK-FKYESMSVPILVNMTASAPV 313
P D+P + NY +PED++ + GI I ++ S +K FK E + P
Sbjct: 400 PMDDPLIDPNYLSDPEDIKTMIAGIKIGRAIFDAPSMAKHFKREIVPGP----------- 448
Query: 314 NLLPRHSNASTSLEQFC---RDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVID 366
A TS ++ R TI+H G C++GK VVD +V G+ +RV+D
Sbjct: 449 --------AVTSDDEIVADIRSRAETIYHPVGTCRMGKDPASVVDPCLQVRGLRNIRVVD 500
Query: 367 GSTFYYSPGTNPQATVMMLG 386
S N A +M+
Sbjct: 501 ASIMPNLVAGNTNAPTIMIA 520
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 151/352 (42%), Gaps = 60/352 (17%)
Query: 65 ASVHKVLFR--IKGKARPVAHGVVFRDATGAKHRAYLKNGPKN------EIIVSAGALGS 116
A +H VL R ++ + + + V+F + T A Y+K+G ++ E+I+S GA+ S
Sbjct: 245 AYLHPVLSRPNLRAEVQTLVSRVLF-EGTRAVGVEYIKDGQRHKAYVSREVILSGGAINS 303
Query: 117 PQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQ----- 163
PQLLMLSG N I VV P VGQ + D+ + P+ + Q
Sbjct: 304 PQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDHLEVYVQQACTQPITLHSAQKPLRK 363
Query: 164 -VVGITQFGSYI-EAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIEN 221
+G+ SY + A+ GG R G+ P I Q +P ++ I++
Sbjct: 364 VCIGLEWLWSYTGDGATAHLETGGFIRSRP-GVPHPDI-QFHFLP---------SQVIDH 412
Query: 222 -MKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGIS 280
K A++ + M S G L+LR+ NP D+P + NY D++ Q +
Sbjct: 413 GRKPTQQEAYQ---VHVGTMRATSVGWLKLRSANPRDHPVIHPNYLSTETDVEDFRQCVR 469
Query: 281 TIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHY 340
+I ++ + F+ + + P + H + ++ F R + +H
Sbjct: 470 LSREIFAQEALAPFRGKELQ-----------PGS----HVQSDKEIDAFVRAKADSAYHP 514
Query: 341 HGGCQVGK------VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLG 386
C++G+ VVD KV+GV+ LRV+D S N A +M+
Sbjct: 515 SCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDASIMPSVVSGNLNAPTVMIA 566
>sp|Q8PPG8|BETA_XANAC Choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=betA PE=3 SV=1
Length = 556
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 147/364 (40%), Gaps = 48/364 (13%)
Query: 46 TAADLLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPK 104
TA L+ A P GL ++ HA+ ++LF GK H +V + G A +
Sbjct: 202 TARGYLDMAKPRDGLHIVTHATTDRILF--AGKRAIGVHYLVGNSSEGIDAHA------R 253
Query: 105 NEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVP 156
E++V AGA+ SPQLL SG A ++ +V D P VGQ + D+ +++
Sbjct: 254 REVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHL--EVYIQYACT 311
Query: 157 VEVSLIQVVGITQFGSYIEAASGENFAG---GSPSPRDYGMFSPKIGQLSKVPPKQRTPE 213
VSL + Q+ + + FAG G+ + + G F + + P Q
Sbjct: 312 KPVSLYPAL---QWWNQPAIGAQWLFAGTGTGASNQFEAGGFI-RTREEFDWPNIQYHFL 367
Query: 214 AIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQ 273
+A A+ + F+ M S G + ++R+P +PS+ FNY +D Q
Sbjct: 368 PVAINYNGSNAVKEHGFQAHV---GSMRTPSRGRVHAKSRDPRQHPSILFNYQSTDQDWQ 424
Query: 274 RCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDT 333
I +II + ++ +S A L+ F R
Sbjct: 425 EFRDAIRITREIIAQPALDAYRGREISPSADCKTDA---------------ELDAFVRSR 469
Query: 334 VMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYM 389
T +H C +G VVD +V G++ LRVID S N AT +M+ +
Sbjct: 470 AETAYHPSCSCAMGTDAMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLNATTIMIAEKI 529
Query: 390 GVRI 393
R+
Sbjct: 530 ADRV 533
>sp|A8AJN0|BETA_CITK8 Choline dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=betA PE=3 SV=1
Length = 558
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 152/378 (40%), Gaps = 56/378 (14%)
Query: 36 TIFDQNGQRHTAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 94
T+ Q + TA L+ A LT++ HA +LF +GK A GV + +
Sbjct: 190 TVTPQGRRASTARGYLDQAKGRPNLTIITHALTDHILF--EGKK---ASGVEWLEGDSTI 244
Query: 95 HRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPM 146
+ + E+++ AGA+ SPQ+L SG A +I +V P VG+ + D+
Sbjct: 245 PTRAMA---RKEVLLCAGAIASPQILQRSGVGDASLLKAFDIPLVHHLPGVGENLQDHLE 301
Query: 147 NAIFVPSPVPVEV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKI 199
+ PV + + ++ FG AS AGG R FS
Sbjct: 302 MYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFI--RSSEAFSWPN 359
Query: 200 GQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNP 259
Q +P +A A+ + F+ M S GH+ +++R+P ++P
Sbjct: 360 IQYHFLP--------VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVHIKSRDPREHP 408
Query: 260 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 319
++ FNY +D Q I +II + K++ +S I
Sbjct: 409 AILFNYMSTGQDWQEFRDAIRITREIINQPALDKYRGREISPGITC-------------- 454
Query: 320 SNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPG 375
L+ F RD T +H G C++G VVD + +V GV+ LRV+D S
Sbjct: 455 -QTDEQLDAFVRDHAETAFHPCGTCKMGYDEMAVVDGEGRVHGVENLRVVDASIMPQIIT 513
Query: 376 TNPQATVMMLGRYMGVRI 393
N AT +M+G M I
Sbjct: 514 GNLNATTIMIGEKMADAI 531
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 133/316 (42%), Gaps = 55/316 (17%)
Query: 92 GAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSD 143
G H+AY+ E+I+S GA+ SPQLLMLSG N I VV P VGQ + D
Sbjct: 286 GQSHKAYVSR----EVILSGGAINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQD 341
Query: 144 NPMNAIFVPSPVPVEVSLIQ------VVGITQFGSYI-EAASGENFAGGSPSPRDYGMFS 196
+ I P+ + Q +G+ + + A+ GG R G+
Sbjct: 342 HLEIYIQHACTQPITLHSAQKPLRKVCIGLEWLWRFTGDGATAHLETGGFIRSRP-GVPH 400
Query: 197 PKIGQLSKVPPKQRTPEAIAEAIEN-MKALDDPAFRGGFILEKVMGPVSTGHLELRTRNP 255
P I Q +P ++ I++ K A++ + M S G L+LR+ NP
Sbjct: 401 PDI-QFHFLP---------SQVIDHGRKPTQQEAYQ---VHVGTMRATSVGWLKLRSTNP 447
Query: 256 NDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNL 315
D+P + NY D++ Q + +I ++F+ F+ + + P +
Sbjct: 448 QDHPMINPNYLSTETDVEDFRQCVKLTREIFAQEAFAPFRGKELQ-----------PGS- 495
Query: 316 LPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVIDGST 369
H + ++ F R + +H C++G+ VVD +V+GV+ LRVID S
Sbjct: 496 ---HVQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASI 552
Query: 370 FYYSPGTNPQATVMML 385
N A +M+
Sbjct: 553 MPSVVSGNLNAPTIMI 568
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 151/374 (40%), Gaps = 56/374 (14%)
Query: 36 TIFDQNGQRHTAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 94
T+ Q + TA L+ A LT+ HA ++F A A GV + +
Sbjct: 190 TVTPQGRRASTARGYLDQARGRPNLTIRTHALTDHIIF-----AGKRAVGVEWLEGESTI 244
Query: 95 HRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPM 146
N E+++ AGA+ SPQ+L SG N I VV D P VG+ + D+
Sbjct: 245 PSKATAN---KEVLLCAGAIASPQILQRSGVGNPELLRQFDIPVVHDLPGVGENLQDHLE 301
Query: 147 NAIFVPSPVPVEV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKI 199
+ PV + + ++ FG AS + AGG R + P I
Sbjct: 302 MYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGIGASNQFEAGGFIRSRAEFAW-PNI 360
Query: 200 GQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNP 259
Q +P +A A+ + F+ M S GH+ L++R+P+ +P
Sbjct: 361 -QYHFLP--------VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRLKSRDPHAHP 408
Query: 260 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 319
++ FNY +D Q I +I+ + K++ +S I
Sbjct: 409 AILFNYMSHEQDWQEFRDAIRITREIMNQPALDKYRGREISPGI---------------E 453
Query: 320 SNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPG 375
+ L++F R+ T +H G C++G VVD + +V G++ LRV+D S
Sbjct: 454 CQSDAELDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGLRVVDASIMPQIIT 513
Query: 376 TNPQATVMMLGRYM 389
N AT +M+G M
Sbjct: 514 GNLNATTIMIGEKM 527
>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25)
GN=betA PE=3 SV=1
Length = 567
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 100/378 (26%), Positives = 156/378 (41%), Gaps = 63/378 (16%)
Query: 40 QNGQR-HTAADLLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRA 97
+NG+R TA L+ A S LT++ HA KVLF K V R GA
Sbjct: 195 KNGRRASTARGYLDTAKKRSTLTIVTHALTDKVLFEGK-------RAVGVRYLIGAAEER 247
Query: 98 YLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAI 149
++ + E++V +GA+ SPQLL SG + +I VV D P VG+ + D+ +
Sbjct: 248 -VEARARKEVLVCSGAIASPQLLQRSGVGPAKLLESLDIPVVHDLPGVGENLQDHLELYL 306
Query: 150 FVPSPVPVEV--SLIQ----VVGITQ-FGSYIEAASGENFAGGSPSPR---DYGMFSPKI 199
PV + SL+ +G F AS + AGG R D+ P I
Sbjct: 307 QYACTQPVSLYPSLLWYNQPAIGAEWLFNGTGIGASNQFEAGGFIRSRPEFDW----PNI 362
Query: 200 GQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNP 259
Q +P +A + + F+ M S G ++L+++NP D P
Sbjct: 363 -QYHFLP--------VAINYNGSNGVKEHGFQAHM---GSMRSPSRGRVQLKSKNPRDYP 410
Query: 260 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 319
S+ FNY +D Q GI +I++ + ++ +S I V
Sbjct: 411 SILFNYMATEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGIDV-------------- 456
Query: 320 SNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPG 375
L++F R+ T +H C++G VVD + +V G+ LRV+D S
Sbjct: 457 -QTDEQLDKFIREHAETAFHPSCSCKMGTDEMAVVDGEGRVHGMQGLRVVDASIMPIITT 515
Query: 376 TNPQATVMMLGRYMGVRI 393
N A +M+ + +I
Sbjct: 516 GNLNAPTIMIAEKIADKI 533
>sp|B2TCJ8|BETA_BURPP Choline dehydrogenase OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=betA PE=3 SV=1
Length = 561
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 158/375 (42%), Gaps = 61/375 (16%)
Query: 41 NGQR-HTAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAY 98
NG+R TA L+ A LT++ HA +VLF K A GV + H
Sbjct: 197 NGRRASTARGYLDRAKTRPNLTIVTHAVTDRVLFSGK-----RAVGVAY-----LHHGNA 246
Query: 99 LKNGPKNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIF 150
+ + E++V +GA+ SPQLL SG ++ +V D P VG+ + D+ I
Sbjct: 247 VNAQARREVLVCSGAIASPQLLQRSGVGRSTWLRELDVPLVHDLPGVGENLQDHLEMYIQ 306
Query: 151 VPSPVPVEV-SLIQ-----VVGITQF--GSYIEAASGENFAGGSPSPRDYGMFSPKIGQL 202
P+ + +Q +G+ G+ I AS + AGG RD ++ P I Q
Sbjct: 307 YECKEPISLYPALQWWNQPAIGLEWMLKGTGI-GASNQFEAGGFIRTRDDDLW-PNI-QY 363
Query: 203 SKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVT 262
+P +A A+ F+ M S G ++L +R+PN +PS+
Sbjct: 364 HFLP--------VAINYNGSNAIKMHGFQAHV---GSMRSPSRGRVKLTSRDPNAHPSIL 412
Query: 263 FNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNA 322
FNY +P D + GI +I+ + +++ ++ P L
Sbjct: 413 FNYMADPLDWREFRDGIRITREIMRQPALDRYRGRELN-----------PGAEL----TT 457
Query: 323 STSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNP 378
L+ F R T +H C++G VVD++ +V G++ALRV+D S N
Sbjct: 458 DEQLDTFVRMRAETAFHPSCSCKMGYDDMAVVDNEGRVHGMEALRVVDASIMPRITTGNL 517
Query: 379 QATVMMLGRYMGVRI 393
A +ML + RI
Sbjct: 518 NAPTIMLAEKIADRI 532
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 157/383 (40%), Gaps = 68/383 (17%)
Query: 40 QNGQRHTAAD-LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAY 98
NG+R +AA+ L+ A G L++ KV+ G+A V R T +R
Sbjct: 188 HNGRRWSAANAYLKPALKRGNVTLVNGFARKVIIE-NGRAVGVEIERRGRVETVKANR-- 244
Query: 99 LKNGPKNEIIVSAGALGSPQLLMLSG----AH----NITVVLDQPLVGQGMSDNPMNAIF 150
E+IVSA + SP+LLMLSG AH I V D+P VG + D+ M F
Sbjct: 245 -------EVIVSASSFNSPKLLMLSGIGPAAHLKDMGIEVKADRPGVGANLQDH-MEFYF 296
Query: 151 VPSPVPVEVSLIQVVGITQFGSYIEAASGENF---AGGSPSPRDYGMFSPKIGQLSKVPP 207
+VS V + + + +G + GG + + + + P
Sbjct: 297 Q------QVSTKPVSLYSWLPWFWQGVAGAQWLLSKGGLGASNQF-----EACAFLRSAP 345
Query: 208 KQRTPE------AIAEAIENMKALDDPAFRG--GFILEKVMGPVSTGHLELRTRNPNDNP 259
+ P+ +A + + A F+ G+ L K S G++ LR+ +P+D+P
Sbjct: 346 GLKQPDIQYHFLPVAISYDGKAAAKSHGFQAHVGYNLSK-----SRGNVTLRSADPHDDP 400
Query: 260 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 319
+ FNY PED ++ + +I K+F F+ P +
Sbjct: 401 VIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDDFR---------------GPEIQPGEN 445
Query: 320 SNASTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVIDGSTFYYS 373
++ F R+ + + +H G C++G VVD + +V+GV+ LRV D S F +
Sbjct: 446 IETDEQIDAFLREHLESAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHV 505
Query: 374 PGTNPQATVMMLGRYMGVRILSE 396
N +M G IL +
Sbjct: 506 TYGNLNGPSIMTGEKAADHILGK 528
>sp|Q62CH8|BETA_BURMA Choline dehydrogenase OS=Burkholderia mallei (strain ATCC 23344)
GN=betA PE=3 SV=1
Length = 565
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 146/359 (40%), Gaps = 67/359 (18%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118
L ++ HA ++LF K A GV F + A + + E++V +GA+ SPQ
Sbjct: 217 LEIVTHALADRILFSGK-----RATGVTFLHGS-----ARVTAHARREVLVCSGAIASPQ 266
Query: 119 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 158
LL SG +I VVLD P VG+ + D+ I PV +
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKEPVSLYPALKWWNQPK 326
Query: 159 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 218
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 219 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 278
A++ F+ M S G ++L++R+P+ +PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSCGRVKLKSRDPHAHPSILFNYMAEALDWREFRDA 428
Query: 279 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 338
I +I+ + +F+ ++ P L + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRFRGRELN-----------PGADL----KSDNELDTFVRARAETAF 473
Query: 339 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
H C++G VVD++ +V G+D LRV+D S N A +M+ + RI
Sbjct: 474 HPSCSCKMGYDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIADRI 532
>sp|Q3BXK8|BETA_XANC5 Choline dehydrogenase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=betA PE=3 SV=1
Length = 556
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 147/364 (40%), Gaps = 48/364 (13%)
Query: 46 TAADLLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPK 104
TA L+ A P GL ++ HA+ ++LF GK H +V + G A +
Sbjct: 202 TARGYLDMAKPRDGLHIVTHATTDRILF--AGKRAIGVHYLVGNSSEGIDAHA------R 253
Query: 105 NEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVP 156
E++V AGA+ SPQLL SG A ++ +V D P VGQ + D+ +++
Sbjct: 254 REVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHL--EVYIQYACT 311
Query: 157 VEVSLIQVVGITQFGSYIEAASGENFAG---GSPSPRDYGMFSPKIGQLSKVPPKQRTPE 213
VSL + Q+ + + FAG G+ + + G F + + P Q
Sbjct: 312 KPVSLYPAL---QWWNQPAIGAEWLFAGTGTGASNQFEAGGFI-RTREEFDWPNIQYHFL 367
Query: 214 AIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQ 273
+A A+ + F+ M S G + ++R+P +PS+ FNY +D Q
Sbjct: 368 PVAINYNGSNAVKEHGFQAHV---GSMRTPSRGRVHAKSRDPRQHPSILFNYQSTDQDWQ 424
Query: 274 RCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDT 333
I +II + ++ +S A L+ F R
Sbjct: 425 EFRDAIRITREIIAQPALDPYRGREISPSADCKTDA---------------ELDAFVRSR 469
Query: 334 VMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYM 389
T +H C +G VVD +V G++ LRVID S N AT +M+ +
Sbjct: 470 AETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLNATTIMIAEKI 529
Query: 390 GVRI 393
R+
Sbjct: 530 ADRM 533
>sp|Q63KK7|BETA_BURPS Choline dehydrogenase OS=Burkholderia pseudomallei (strain K96243)
GN=betA PE=3 SV=1
Length = 565
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 146/359 (40%), Gaps = 67/359 (18%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118
L ++ HA ++LF K A GV F + A + + E++V +GA+ SPQ
Sbjct: 217 LEIVTHALADRILFSGK-----RATGVTFLHGS-----ARVTAHARREVLVCSGAIASPQ 266
Query: 119 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 158
LL SG +I VVLD P VG+ + D+ I PV +
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKEPVSLYPALKWWNQPK 326
Query: 159 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 218
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 219 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 278
A++ F+ M S G ++L++R+P+ +PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLKSRDPHAHPSILFNYMAEALDWREFRDA 428
Query: 279 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 338
I +I+ + +F+ ++ P L + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRFRGRELN-----------PGADL----KSDNELDTFVRARAETAF 473
Query: 339 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
H C++G VVD++ +V G+D LRV+D S N A +M+ + RI
Sbjct: 474 HPSCSCKMGYDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIADRI 532
>sp|Q3JLL7|BETA_BURP1 Choline dehydrogenase OS=Burkholderia pseudomallei (strain 1710b)
GN=betA PE=3 SV=1
Length = 565
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 146/359 (40%), Gaps = 67/359 (18%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118
L ++ HA ++LF K A GV F + A + + E++V +GA+ SPQ
Sbjct: 217 LEIVTHALADRILFSGK-----RATGVTFLHGS-----ARVTAHARREVLVCSGAIASPQ 266
Query: 119 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 158
LL SG +I VVLD P VG+ + D+ I PV +
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKEPVSLYPALKWWNQPK 326
Query: 159 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 218
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 219 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 278
A++ F+ M S G ++L++R+P+ +PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLKSRDPHAHPSILFNYMAEALDWREFRDA 428
Query: 279 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 338
I +I+ + +F+ ++ P L + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRFRGRELN-----------PGADL----KSDNELDTFVRARAETAF 473
Query: 339 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
H C++G VVD++ +V G+D LRV+D S N A +M+ + RI
Sbjct: 474 HPSCSCKMGYDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIADRI 532
>sp|Q48CM7|BETA_PSE14 Choline dehydrogenase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=betA PE=3 SV=1
Length = 568
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 157/372 (42%), Gaps = 53/372 (14%)
Query: 41 NGQRHTAAD--LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAY 98
NG+R + A L E S LT++ HA ++LF K +A VA+ V D T + RA
Sbjct: 198 NGRRASTARGYLDEAKKRSTLTIVTHALTDRILFEGK-RAVGVAYLVGDSD-TRIQARA- 254
Query: 99 LKNGPKNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIF 150
+ E+++ GA+ SPQ+L SG +I VV D P VGQ + D+ +
Sbjct: 255 -----RKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLEMYLQ 309
Query: 151 VPSPVPVEVSLIQVVGITQFGSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSKV 205
PV + + + A G F G G+ + + G F + + +
Sbjct: 310 YACTQPVSL-------YPSLKWWNQPAIGAKWMFLGTGIGASNQFEAGGFI-RSSEAFEW 361
Query: 206 PPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNY 265
P Q +A K + + F+ M S G +++++++P + PS+ FNY
Sbjct: 362 PNIQYHFLPVAINYNGTKGVQEHGFQAHV---GSMRSPSRGRVQVKSKDPREYPSILFNY 418
Query: 266 FKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTS 325
+D Q GI +I++ + ++ +S I V + +
Sbjct: 419 MSSEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGIDV---------------QSDEA 463
Query: 326 LEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQAT 381
L+QF R+ T +H C++G VVD +V G+ +LRV+D S N A
Sbjct: 464 LDQFVREHAETAYHPSCSCKMGTDEMAVVDGQGRVHGLQSLRVVDASIMPIITTGNLNAP 523
Query: 382 VMMLGRYMGVRI 393
+M+ + +I
Sbjct: 524 TIMIAEKIADKI 535
>sp|Q4ZM63|BETA_PSEU2 Choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=betA PE=3 SV=1
Length = 568
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 157/372 (42%), Gaps = 53/372 (14%)
Query: 41 NGQRHTAAD--LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAY 98
NG+R + A L E S LT++ HA ++LF K +A VA+ V D T + RA
Sbjct: 198 NGRRASTARGYLDEAKKRSTLTIVTHALTDRILFEGK-RAVGVAYLVGDSD-TRIQARA- 254
Query: 99 LKNGPKNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIF 150
+ E+++ GA+ SPQ+L SG +I VV D P VGQ + D+ +
Sbjct: 255 -----RKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLEMYLQ 309
Query: 151 VPSPVPVEVSLIQVVGITQFGSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSKV 205
PV + + + A G F G G+ + + G F + + +
Sbjct: 310 YACTQPVSL-------YPSLKWWNQPAIGAEWMFLGTGIGASNQFEAGGFI-RSSEAFEW 361
Query: 206 PPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNY 265
P Q +A K + + F+ M S G +++++++P + PS+ FNY
Sbjct: 362 PNIQYHFLPVAINYNGTKGVQEHGFQAHV---GSMRSPSRGRVQVKSKDPREYPSILFNY 418
Query: 266 FKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTS 325
+D Q GI +I++ + ++ +S I V + +
Sbjct: 419 MASEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGIDV---------------QSDEA 463
Query: 326 LEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQAT 381
L+QF R+ T +H C++G VVD +V G+ +LRV+D S N A
Sbjct: 464 LDQFVREHAETAYHPSCSCKMGTDEMAVVDGQGRVHGLQSLRVVDASIMPIITTGNLNAP 523
Query: 382 VMMLGRYMGVRI 393
+M+ + +I
Sbjct: 524 TIMIAEKIADKI 535
>sp|Q8P5D7|BETA_XANCP Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=betA PE=3
SV=1
Length = 556
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 150/374 (40%), Gaps = 48/374 (12%)
Query: 36 TIFDQNGQRHTAADLLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 94
T+ Q + TA L+ A P L ++ HA+ ++LF GK H +V + G
Sbjct: 192 TVTPQGRRASTARGYLDMAKPRDSLHIVTHATTDRILF--AGKRAVGVHYLVGNSSEGID 249
Query: 95 HRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPM 146
A + E++V AGA+ SPQLL SG A ++ +V D P VGQ + D+
Sbjct: 250 AHA------RREVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHL- 302
Query: 147 NAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAG---GSPSPRDYGMFSPKIGQLS 203
+++ VSL + Q+ + + FAG G+ + + G F + +
Sbjct: 303 -EVYMQYACTKPVSLYPAL---QWWNQPAIGAEWLFAGTGTGASNQFEAGGFI-RTREEF 357
Query: 204 KVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTF 263
P Q +A A+ + F+ M S G + R+R+P +PS+ F
Sbjct: 358 DWPNIQYHFLPVAINYNGSNAVKEHGFQAHV---GSMRTPSRGRVHARSRDPRQHPSILF 414
Query: 264 NYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAS 323
NY +D Q I +II + ++ +S A
Sbjct: 415 NYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSADCKTDA-------------- 460
Query: 324 TSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQ 379
L+ F R T +H C +G VVD +V G++ LRVID S N
Sbjct: 461 -ELDAFVRARAETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLN 519
Query: 380 ATVMMLGRYMGVRI 393
AT +M+ + RI
Sbjct: 520 ATTIMIAEKIVDRI 533
>sp|B0RNU9|BETA_XANCB Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain B100) GN=betA PE=3 SV=1
Length = 556
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 150/374 (40%), Gaps = 48/374 (12%)
Query: 36 TIFDQNGQRHTAADLLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 94
T+ Q + TA L+ A P L ++ HA+ ++LF GK H +V + G
Sbjct: 192 TVTPQGRRASTARGYLDMAKPRDSLHIVTHATTDRILF--AGKRAVGVHYLVGNSSEGID 249
Query: 95 HRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPM 146
A + E++V AGA+ SPQLL SG A ++ +V D P VGQ + D+
Sbjct: 250 AHA------RREVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHL- 302
Query: 147 NAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAG---GSPSPRDYGMFSPKIGQLS 203
+++ VSL + Q+ + + FAG G+ + + G F + +
Sbjct: 303 -EVYMQYACTKPVSLYPAL---QWWNQPAIGAEWLFAGTGTGASNQFEAGGFI-RTREEF 357
Query: 204 KVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTF 263
P Q +A A+ + F+ M S G + R+R+P +PS+ F
Sbjct: 358 DWPNIQYHFLPVAINYNGSNAVKEHGFQAHV---GSMRTPSRGRVHARSRDPRQHPSILF 414
Query: 264 NYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAS 323
NY +D Q I +II + ++ +S A
Sbjct: 415 NYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSADCKTDA-------------- 460
Query: 324 TSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQ 379
L+ F R T +H C +G VVD +V G++ LRVID S N
Sbjct: 461 -ELDAFVRARAETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLN 519
Query: 380 ATVMMLGRYMGVRI 393
AT +M+ + RI
Sbjct: 520 ATTIMIAEKIVDRI 533
>sp|Q4UYN5|BETA_XANC8 Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=betA PE=3 SV=1
Length = 556
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 150/374 (40%), Gaps = 48/374 (12%)
Query: 36 TIFDQNGQRHTAADLLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 94
T+ Q + TA L+ A P L ++ HA+ ++LF GK H +V + G
Sbjct: 192 TVTPQGRRASTARGYLDMAKPRDSLHIVTHATTDRILF--AGKRAVGVHYLVGNSSEGID 249
Query: 95 HRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPM 146
A + E++V AGA+ SPQLL SG A ++ +V D P VGQ + D+
Sbjct: 250 AHA------RREVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHL- 302
Query: 147 NAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAG---GSPSPRDYGMFSPKIGQLS 203
+++ VSL + Q+ + + FAG G+ + + G F + +
Sbjct: 303 -EVYMQYACTKPVSLYPAL---QWWNQPAIGAEWLFAGTGTGASNQFEAGGFI-RTREEF 357
Query: 204 KVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTF 263
P Q +A A+ + F+ M S G + R+R+P +PS+ F
Sbjct: 358 DWPNIQYHFLPVAINYNGSNAVKEHGFQAHV---GSMRTPSRGRVHARSRDPRQHPSILF 414
Query: 264 NYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAS 323
NY +D Q I +II + ++ +S A
Sbjct: 415 NYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSADCKTDA-------------- 460
Query: 324 TSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQ 379
L+ F R T +H C +G VVD +V G++ LRVID S N
Sbjct: 461 -ELDAFVRARAETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLN 519
Query: 380 ATVMMLGRYMGVRI 393
AT +M+ + RI
Sbjct: 520 ATTIMIAEKIVDRI 533
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 157/378 (41%), Gaps = 56/378 (14%)
Query: 36 TIFDQNGQRHTAADLLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 94
T+ + + TA L+ A S LT++ HA K+LF K A GV + + +
Sbjct: 192 TVTPKGRRASTARGYLDTAKKRSTLTIVTHALTDKILFEGK-----RAVGVSYLQGSTEE 246
Query: 95 HRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPM 146
++ + E+IVS+GA+ SPQLL SG + +I VV D P VG+ + D+
Sbjct: 247 R---VEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLE 303
Query: 147 NAIFVPSPVPVEV--SLIQ----VVGITQ-FGSYIEAASGENFAGGSPSPRDYGMFSPKI 199
+ PV + SL+ +G F AS + AGG R+ + P I
Sbjct: 304 LYLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTGIGASNQFEAGGFIRTREEFEW-PNI 362
Query: 200 GQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNP 259
Q +P +A + + F+ M S G ++L++++P +P
Sbjct: 363 -QYHFLP--------VAINYNGSNGVKEHGFQAHM---GSMRSPSRGRVQLKSKDPRQHP 410
Query: 260 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 319
S+ FNY +D Q GI +I++ + F+ +S I V
Sbjct: 411 SILFNYMATEQDWQEFRDGIRLTREIMQQPALDPFRGREISPGIEV-------------- 456
Query: 320 SNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPG 375
L++F R+ T +H C++G VVD +V G+ LRV+D S
Sbjct: 457 -QTDEQLDKFVREHAETAFHPSCSCKMGTDDMAVVDGQGRVHGMQGLRVVDASIMPIITT 515
Query: 376 TNPQATVMMLGRYMGVRI 393
N A +M+ + +I
Sbjct: 516 GNLNAPTIMMAEKIADKI 533
>sp|B0V945|BETA_ACIBY Choline dehydrogenase OS=Acinetobacter baumannii (strain AYE)
GN=betA PE=3 SV=1
Length = 552
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 148/352 (42%), Gaps = 50/352 (14%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118
LT+L HA+ +K+LF K A GV + GA + K E+++ AGA+ SPQ
Sbjct: 217 LTILTHATTNKILFNQK-----QAIGVEY--IIGADQNNLQRALVKREVLLCAGAIASPQ 269
Query: 119 LLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQF 170
+L SG + +I VV D P VG+ + D+ +++ VSL +
Sbjct: 270 ILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHL--EMYLQYKCKQPVSLYPALKW--- 324
Query: 171 GSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL 225
Y + A G F G G+ + + G F + K P Q +A A+
Sbjct: 325 --YNQPAIGAEWLFNGTGIGASNQFEAGGFIRSSDEF-KWPNIQYHFLPVAINYNGSNAV 381
Query: 226 DDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKI 285
+ F+ M S G ++L++++P +PS+ FNY +D + I +I
Sbjct: 382 KEHGFQAHV---GSMRSPSRGRIKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREI 438
Query: 286 IESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQ 345
+ + ++ + +S +H L+ F R+ T +H C+
Sbjct: 439 MHQPALDPYRGDEISP---------------GKHLQTDAELDDFVRNHAETAYHPSCSCK 483
Query: 346 VGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
+G+ VVD +V G++ LRV+D S N AT +M+ + +I
Sbjct: 484 MGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGNLNATTIMIAEKIADQI 535
>sp|B0VST3|BETA_ACIBS Choline dehydrogenase OS=Acinetobacter baumannii (strain SDF)
GN=betA PE=3 SV=1
Length = 552
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 148/352 (42%), Gaps = 50/352 (14%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118
LT+L HA+ +K+LF K A GV + GA + K E+++ AGA+ SPQ
Sbjct: 217 LTILTHATTNKILFNQK-----QAIGVEY--IIGADQNNLQRALVKREVLLCAGAIASPQ 269
Query: 119 LLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQF 170
+L SG + +I VV D P VG+ + D+ +++ VSL +
Sbjct: 270 ILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHL--EMYLQYKCKQPVSLYPALKW--- 324
Query: 171 GSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL 225
Y + A G F G G+ + + G F + K P Q +A A+
Sbjct: 325 --YNQPAIGAEWLFNGTGIGASNQFEAGGFIRSSDEF-KWPNIQYHFLPVAINYNGSNAV 381
Query: 226 DDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKI 285
+ F+ M S G ++L++++P +PS+ FNY +D + I +I
Sbjct: 382 KEHGFQAHV---GSMRSPSRGRIKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREI 438
Query: 286 IESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQ 345
+ + ++ + +S +H L+ F R+ T +H C+
Sbjct: 439 MHQPALDPYRGDEISP---------------GKHLQTDAELDDFVRNHAETAYHPSCSCK 483
Query: 346 VGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
+G+ VVD +V G++ LRV+D S N AT +M+ + +I
Sbjct: 484 MGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGNLNATTIMIAEKIADQI 535
>sp|B2HV79|BETA_ACIBC Choline dehydrogenase OS=Acinetobacter baumannii (strain ACICU)
GN=betA PE=3 SV=1
Length = 552
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 148/352 (42%), Gaps = 50/352 (14%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118
LT+L HA+ +K+LF K A GV + GA + K E+++ AGA+ SPQ
Sbjct: 217 LTILTHATTNKILFNQK-----QAIGVEY--IIGADQNNLQRALVKREVLLCAGAIASPQ 269
Query: 119 LLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQF 170
+L SG + +I VV D P VG+ + D+ +++ VSL +
Sbjct: 270 ILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHL--EMYLQYKCKQPVSLYPALKW--- 324
Query: 171 GSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL 225
Y + A G F G G+ + + G F + K P Q +A A+
Sbjct: 325 --YNQPAIGAEWLFNGTGIGASNQFEAGGFIRSSDEF-KWPNIQYHFLPVAINYNGSNAV 381
Query: 226 DDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKI 285
+ F+ M S G ++L++++P +PS+ FNY +D + I +I
Sbjct: 382 KEHGFQAHV---GSMRSPSRGRIKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREI 438
Query: 286 IESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQ 345
+ + ++ + +S +H L+ F R+ T +H C+
Sbjct: 439 MHQPALDPYRGDEISP---------------GKHLQTDAELDDFVRNHAETAYHPSCSCK 483
Query: 346 VGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
+G+ VVD +V G++ LRV+D S N AT +M+ + +I
Sbjct: 484 MGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGNLNATTIMIAEKIADQI 535
>sp|B7I895|BETA_ACIB5 Choline dehydrogenase OS=Acinetobacter baumannii (strain AB0057)
GN=betA PE=3 SV=1
Length = 552
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 148/352 (42%), Gaps = 50/352 (14%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118
LT+L HA+ +K+LF K A GV + GA + K E+++ AGA+ SPQ
Sbjct: 217 LTILTHATTNKILFNQK-----QAIGVEY--IIGADQNNLQRALVKREVLLCAGAIASPQ 269
Query: 119 LLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQF 170
+L SG + +I VV D P VG+ + D+ +++ VSL +
Sbjct: 270 ILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHL--EMYLQYKCKQPVSLYPALKW--- 324
Query: 171 GSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL 225
Y + A G F G G+ + + G F + K P Q +A A+
Sbjct: 325 --YNQPAIGAEWLFNGTGIGASNQFEAGGFIRSSDEF-KWPNIQYHFLPVAINYNGSNAV 381
Query: 226 DDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKI 285
+ F+ M S G ++L++++P +PS+ FNY +D + I +I
Sbjct: 382 KEHGFQAHV---GSMRSPSRGRIKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREI 438
Query: 286 IESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQ 345
+ + ++ + +S +H L+ F R+ T +H C+
Sbjct: 439 MHQPALDPYRGDEISP---------------GKHLQTDAELDDFVRNHAETAYHPSCSCK 483
Query: 346 VGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
+G+ VVD +V G++ LRV+D S N AT +M+ + +I
Sbjct: 484 MGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGNLNATTIMIAEKIADQI 535
>sp|B7GYG5|BETA_ACIB3 Choline dehydrogenase OS=Acinetobacter baumannii (strain
AB307-0294) GN=betA PE=3 SV=1
Length = 552
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 148/352 (42%), Gaps = 50/352 (14%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118
LT+L HA+ +K+LF K A GV + GA + K E+++ AGA+ SPQ
Sbjct: 217 LTILTHATTNKILFNQK-----QAIGVEY--IIGADQNNLQRALVKREVLLCAGAIASPQ 269
Query: 119 LLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQF 170
+L SG + +I VV D P VG+ + D+ +++ VSL +
Sbjct: 270 ILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHL--EMYLQYKCKQPVSLYPALKW--- 324
Query: 171 GSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL 225
Y + A G F G G+ + + G F + K P Q +A A+
Sbjct: 325 --YNQPAIGAEWLFNGTGIGASNQFEAGGFIRSSDEF-KWPNIQYHFLPVAINYNGSNAV 381
Query: 226 DDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKI 285
+ F+ M S G ++L++++P +PS+ FNY +D + I +I
Sbjct: 382 KEHGFQAHV---GSMRSPSRGRIKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREI 438
Query: 286 IESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQ 345
+ + ++ + +S +H L+ F R+ T +H C+
Sbjct: 439 MHQPALDPYRGDEISP---------------GKHLQTDAELDDFVRNHAETAYHPSCSCK 483
Query: 346 VGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
+G+ VVD +V G++ LRV+D S N AT +M+ + +I
Sbjct: 484 MGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGNLNATTIMIAEKIADQI 535
>sp|Q3K5H3|BETA_PSEPF Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=betA PE=3 SV=1
Length = 567
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 153/374 (40%), Gaps = 57/374 (15%)
Query: 41 NGQR-HTAADLLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAY 98
NG+R TA L+ A S LT++ HA KVLF K V R GA
Sbjct: 196 NGRRASTARGYLDVAKKRSTLTIVTHALTDKVLFEGK-------RAVGVRYLVGAAEER- 247
Query: 99 LKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIF 150
++ + E+IV +GA+ SPQLL SG + +I VV D P VG+ + D+ +
Sbjct: 248 VEARARKEVIVCSGAIASPQLLQRSGVGPAKLLESLDIPVVHDLPGVGENLQDHLELYLQ 307
Query: 151 VPSPVPVEV--SLIQ----VVGITQ-FGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLS 203
PV + SL+ +G F AS + AGG R P+
Sbjct: 308 YACTQPVSLYPSLLWYNQPAIGAEWLFNGTGIGASNQFEAGGFIRTR------PEF---- 357
Query: 204 KVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTF 263
+ P Q +A + + F+ M S G +++++++P +PS+ F
Sbjct: 358 EWPNIQYHFLPVAINYNGSNGVKEHGFQAHM---GSMRSPSRGRVQVKSKDPRQHPSILF 414
Query: 264 NYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAS 323
NY +D Q GI +I++ + F+ +S I V
Sbjct: 415 NYMATEQDWQEFRDGIRLTREIMQQPALDAFRGREISPGIEV---------------QTD 459
Query: 324 TSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQ 379
L++F R+ T +H C++G VVD + +V G+ LRV+D S N
Sbjct: 460 EQLDKFIREHAETAFHPSCSCKMGTDDMAVVDGEGRVHGMQGLRVVDASIMPIITTGNLN 519
Query: 380 ATVMMLGRYMGVRI 393
A +M+ + +I
Sbjct: 520 APTIMMAEKIADKI 533
>sp|B1Z034|BETA_BURA4 Choline dehydrogenase OS=Burkholderia ambifaria (strain MC40-6)
GN=betA PE=3 SV=1
Length = 566
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 146/360 (40%), Gaps = 69/360 (19%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVF-RDATGAKHRAYLKNGPKNEIIVSAGALGSP 117
L ++ HA ++LF GK A GV + R + A A + E++V +GA+ SP
Sbjct: 217 LEIVTHALADRILF--DGKR---ASGVTYLRGSERANAHA------RREVLVCSGAIASP 265
Query: 118 QLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------ 157
QLL SG +I +VLD P VGQ + D+ I PV
Sbjct: 266 QLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQP 325
Query: 158 EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAE 217
++ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 326 KIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAI 370
Query: 218 AIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQ 277
A++ F+ M S G ++LR+R+PN +PS+ FNY E D +
Sbjct: 371 NYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNAHPSILFNYMAEALDWREFRD 427
Query: 278 GISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTI 337
I +I+ + +++ + N A + L+ F R T
Sbjct: 428 AIRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDTFVRSRAETA 472
Query: 338 WHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
+H C++G VVD + +V G++ LRV+D S N A +M+ + +I
Sbjct: 473 FHPSCSCKMGYDDMAVVDEEGRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 150/374 (40%), Gaps = 56/374 (14%)
Query: 36 TIFDQNGQRHTAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 94
T+ Q + TA L+ A LT+ HA ++F K R V + D+T
Sbjct: 190 TVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFDCK---RAVGVEWLEGDSTIPT 246
Query: 95 HRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPM 146
K E+++ AGA+ SPQ+L SG N I +V D P VG+ + D+
Sbjct: 247 RATANK-----EVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHDLPGVGENLQDHLE 301
Query: 147 NAIFVPSPVPVEV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKI 199
+ PV + + ++ FG AS AGG R+ + P I
Sbjct: 302 MYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAW-PNI 360
Query: 200 GQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNP 259
Q +P +A A+ + F+ M S GH+ +++R+P+ +P
Sbjct: 361 -QYHFLP--------VAINYNGSNAVKEHGFQCHV---GSMRSPSRGHVRIKSRDPHQHP 408
Query: 260 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 319
++ FNY +D Q I +I+ + +++ +S
Sbjct: 409 AILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGT---------------E 453
Query: 320 SNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPG 375
L++F R+ T +H G C++G VVD + +V G++ LRV+D S
Sbjct: 454 CQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIIT 513
Query: 376 TNPQATVMMLGRYM 389
N AT +M+G M
Sbjct: 514 GNLNATTIMIGEKM 527
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 150/374 (40%), Gaps = 56/374 (14%)
Query: 36 TIFDQNGQRHTAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 94
T+ Q + TA L+ A LT+ HA ++F K R V + D+T
Sbjct: 190 TVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFDCK---RAVGVEWLEGDSTIPT 246
Query: 95 HRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPM 146
K E+++ AGA+ SPQ+L SG N I +V D P VG+ + D+
Sbjct: 247 RATANK-----EVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHDLPGVGENLQDHLE 301
Query: 147 NAIFVPSPVPVEV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKI 199
+ PV + + ++ FG AS AGG R+ + P I
Sbjct: 302 MYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAW-PNI 360
Query: 200 GQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNP 259
Q +P +A A+ + F+ M S GH+ +++R+P+ +P
Sbjct: 361 -QYHFLP--------VAINYNGSNAVKEHGFQCHV---GSMRSPSRGHVRIKSRDPHQHP 408
Query: 260 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 319
++ FNY +D Q I +I+ + +++ +S
Sbjct: 409 AILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGT---------------E 453
Query: 320 SNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPG 375
L++F R+ T +H G C++G VVD + +V G++ LRV+D S
Sbjct: 454 CQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIIT 513
Query: 376 TNPQATVMMLGRYM 389
N AT +M+G M
Sbjct: 514 GNLNATTIMIGEKM 527
>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1
Length = 559
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 149/354 (42%), Gaps = 57/354 (16%)
Query: 59 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118
LT++ HA ++LF K +A VA+ F+ + +A + E+++ AGA+ SPQ
Sbjct: 214 LTIVTHALTDRILFDGK-RAVGVAY---FKGESAQTAKA------RREVLLCAGAIASPQ 263
Query: 119 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEV-SLIQVVGITQ 169
+L SG +I+VV D P VG+ + D+ + PV + +Q +
Sbjct: 264 ILQRSGVGPKDLLQRLDISVVHDLPGVGENLQDHLEMYLQYACKEPVSLYPALQWFNQPK 323
Query: 170 FGSYIE------AASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMK 223
G+ AS + AGG RD + P I Q +P +A
Sbjct: 324 IGAEWLFNGTGIGASNQFEAGGFIRSRDEFTW-PNI-QYHFLP--------VAINYNGSN 373
Query: 224 ALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIE 283
A+ + F+ M +S G +++R+++ ++PS+ FNY +D Q I
Sbjct: 374 AVKEHGFQAHV---GSMRSLSRGRVQVRSKDAREHPSILFNYMSTEQDWQEFRDAIRITR 430
Query: 284 KIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGG 343
+I+ + K++ +S + V L++F R T +H
Sbjct: 431 EIMAQPALDKYRGREISPGLAV---------------QTDEELDEFIRTHAETAFHPSCS 475
Query: 344 CQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393
C++G+ VVD V G++ LRV+D S N AT +M+ + RI
Sbjct: 476 CKMGEDDMSVVDGQGCVHGMEGLRVVDASIMPQIITGNLNATTIMIAEKIADRI 529
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,680,215
Number of Sequences: 539616
Number of extensions: 7216800
Number of successful extensions: 16411
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 15898
Number of HSP's gapped (non-prelim): 351
length of query: 404
length of database: 191,569,459
effective HSP length: 120
effective length of query: 284
effective length of database: 126,815,539
effective search space: 36015613076
effective search space used: 36015613076
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)