Query 015588
Match_columns 404
No_of_seqs 209 out of 1197
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:42:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238 Glucose dehydrogenase/ 100.0 1.1E-71 2.4E-76 553.1 28.5 370 3-403 212-622 (623)
2 PLN02785 Protein HOTHEAD 100.0 2.3E-70 4.9E-75 562.4 36.4 399 2-402 178-585 (587)
3 TIGR01810 betA choline dehydro 100.0 4E-61 8.7E-66 494.1 29.0 354 2-396 151-529 (532)
4 PRK02106 choline dehydrogenase 100.0 6.9E-61 1.5E-65 494.9 29.9 357 2-396 158-534 (560)
5 COG2303 BetA Choline dehydroge 100.0 3.8E-53 8.3E-58 432.5 23.3 352 2-395 160-535 (542)
6 TIGR02462 pyranose_ox pyranose 100.0 8.8E-38 1.9E-42 315.7 25.5 312 40-396 204-542 (544)
7 PF05199 GMC_oxred_C: GMC oxid 100.0 1.2E-36 2.6E-41 259.6 11.8 138 242-389 1-144 (144)
8 PF00732 GMC_oxred_N: GMC oxid 99.9 3.2E-26 6.9E-31 218.6 9.2 132 2-145 150-295 (296)
9 PRK12835 3-ketosteroid-delta-1 96.8 0.0041 9E-08 65.1 8.3 60 53-121 222-282 (584)
10 PRK12837 3-ketosteroid-delta-1 96.3 0.014 3E-07 60.2 8.4 57 55-121 185-242 (513)
11 PRK07843 3-ketosteroid-delta-1 96.1 0.02 4.3E-07 59.7 8.3 59 53-121 217-275 (557)
12 PRK12844 3-ketosteroid-delta-1 95.9 0.024 5.2E-07 59.1 8.1 59 53-121 217-276 (557)
13 PRK12839 hypothetical protein; 95.9 0.024 5.1E-07 59.3 7.8 58 54-120 224-282 (572)
14 PRK07121 hypothetical protein; 95.7 0.033 7.1E-07 57.2 7.9 61 53-122 186-247 (492)
15 PRK08274 tricarballylate dehyd 95.4 0.042 9.1E-07 55.9 7.3 61 53-123 140-200 (466)
16 PRK12845 3-ketosteroid-delta-1 95.3 0.054 1.2E-06 56.5 7.7 58 54-121 227-285 (564)
17 KOG2404 Fumarate reductase, fl 95.2 0.023 5.1E-07 53.6 4.3 49 58-116 159-207 (477)
18 PF00890 FAD_binding_2: FAD bi 94.9 0.076 1.7E-06 53.1 7.5 56 56-122 153-209 (417)
19 PRK13977 myosin-cross-reactive 94.8 0.099 2.2E-06 54.0 7.9 58 53-114 235-292 (576)
20 PRK12843 putative FAD-binding 94.7 0.077 1.7E-06 55.6 7.0 59 53-121 230-289 (578)
21 PRK06134 putative FAD-binding 94.6 0.11 2.3E-06 54.6 7.9 57 54-120 227-283 (581)
22 TIGR01813 flavo_cyto_c flavocy 94.6 0.089 1.9E-06 53.1 7.1 59 53-120 139-198 (439)
23 PRK05675 sdhA succinate dehydr 94.4 0.11 2.5E-06 54.2 7.5 54 54-116 136-190 (570)
24 TIGR01811 sdhA_Bsu succinate d 94.4 0.11 2.4E-06 54.7 7.4 52 56-116 145-197 (603)
25 PRK06263 sdhA succinate dehydr 94.3 0.11 2.4E-06 54.1 7.2 55 53-116 143-198 (543)
26 PRK09078 sdhA succinate dehydr 94.2 0.12 2.6E-06 54.4 7.2 54 54-116 159-213 (598)
27 PRK07573 sdhA succinate dehydr 93.9 0.14 3.1E-06 54.2 7.1 53 54-116 180-233 (640)
28 TIGR01816 sdhA_forward succina 93.8 0.16 3.4E-06 53.1 7.2 53 54-116 129-182 (565)
29 PRK06175 L-aspartate oxidase; 93.8 0.18 3.8E-06 50.9 7.2 51 55-116 140-190 (433)
30 PRK08958 sdhA succinate dehydr 93.5 0.21 4.6E-06 52.4 7.5 54 54-116 153-207 (588)
31 PTZ00139 Succinate dehydrogena 93.5 0.2 4.2E-06 53.0 7.3 54 54-116 176-230 (617)
32 PF06039 Mqo: Malate:quinone o 93.1 0.55 1.2E-05 47.0 9.1 85 50-155 187-273 (488)
33 PRK12842 putative succinate de 93.1 0.31 6.8E-06 51.0 8.1 54 54-117 224-277 (574)
34 PLN00128 Succinate dehydrogena 93.1 0.22 4.9E-06 52.7 6.9 53 55-116 198-251 (635)
35 PTZ00306 NADH-dependent fumara 92.9 0.27 5.7E-06 55.9 7.6 57 56-117 559-622 (1167)
36 PRK08275 putative oxidoreducta 92.8 0.26 5.6E-06 51.4 6.8 53 54-115 147-200 (554)
37 PRK12834 putative FAD-binding 92.8 0.39 8.4E-06 50.0 8.1 56 56-121 164-234 (549)
38 PRK06452 sdhA succinate dehydr 92.7 0.32 7E-06 50.8 7.4 51 55-115 147-198 (566)
39 PRK06481 fumarate reductase fl 92.7 0.34 7.3E-06 49.9 7.5 58 55-122 201-259 (506)
40 PLN02815 L-aspartate oxidase 92.3 0.27 5.9E-06 51.6 6.3 55 55-115 167-222 (594)
41 PRK08641 sdhA succinate dehydr 92.3 0.36 7.8E-06 50.7 7.2 51 57-116 150-201 (589)
42 COG0029 NadB Aspartate oxidase 92.3 0.21 4.4E-06 50.2 5.0 54 53-115 143-196 (518)
43 PRK07803 sdhA succinate dehydr 92.3 0.37 8.1E-06 51.0 7.3 49 58-116 165-214 (626)
44 PRK09077 L-aspartate oxidase; 92.1 0.36 7.9E-06 50.1 6.9 57 55-116 150-208 (536)
45 PRK07395 L-aspartate oxidase; 91.9 0.25 5.4E-06 51.5 5.3 52 55-115 146-197 (553)
46 PRK08626 fumarate reductase fl 91.6 0.43 9.3E-06 50.8 6.8 52 54-115 168-220 (657)
47 PRK07057 sdhA succinate dehydr 91.6 0.51 1.1E-05 49.6 7.3 53 55-116 159-212 (591)
48 PRK08071 L-aspartate oxidase; 91.2 0.41 8.8E-06 49.4 6.0 50 57-116 142-191 (510)
49 TIGR01812 sdhA_frdA_Gneg succi 91.2 0.51 1.1E-05 49.3 6.8 52 55-116 140-192 (566)
50 PRK05945 sdhA succinate dehydr 91.0 0.68 1.5E-05 48.5 7.5 54 53-116 144-198 (575)
51 PF01266 DAO: FAD dependent ox 90.8 0.28 6E-06 47.2 4.2 69 40-124 139-211 (358)
52 TIGR01176 fum_red_Fp fumarate 90.8 0.68 1.5E-05 48.5 7.3 51 55-115 144-195 (580)
53 PRK08205 sdhA succinate dehydr 90.6 0.62 1.3E-05 48.9 6.9 56 54-115 150-206 (583)
54 PRK09231 fumarate reductase fl 90.6 0.72 1.6E-05 48.4 7.3 52 55-116 145-197 (582)
55 TIGR03377 glycerol3P_GlpA glyc 90.1 0.9 1.9E-05 46.9 7.4 61 53-124 137-198 (516)
56 PLN02464 glycerol-3-phosphate 89.6 0.93 2E-05 48.0 7.2 62 53-124 241-304 (627)
57 PRK11101 glpA sn-glycerol-3-ph 88.6 1.2 2.7E-05 46.3 7.2 78 34-124 137-219 (546)
58 TIGR02061 aprA adenosine phosp 88.3 1.2 2.7E-05 46.9 7.0 52 57-115 139-191 (614)
59 PRK06854 adenylylsulfate reduc 88.3 1.3 2.8E-05 46.8 7.1 51 55-115 144-195 (608)
60 PRK07512 L-aspartate oxidase; 88.3 0.75 1.6E-05 47.5 5.3 50 55-115 148-197 (513)
61 TIGR00551 nadB L-aspartate oxi 88.2 1.1 2.4E-05 45.9 6.5 50 56-116 141-190 (488)
62 PRK13800 putative oxidoreducta 88.1 1.2 2.6E-05 49.3 7.0 50 56-115 155-205 (897)
63 PRK06069 sdhA succinate dehydr 88.0 1.3 2.8E-05 46.5 6.9 51 55-115 149-200 (577)
64 TIGR03378 glycerol3P_GlpB glyc 86.7 2.1 4.6E-05 42.8 7.1 71 41-124 261-331 (419)
65 PF13738 Pyr_redox_3: Pyridine 86.4 0.9 2E-05 40.1 4.1 60 50-124 87-147 (203)
66 PRK07804 L-aspartate oxidase; 86.1 1.8 3.9E-05 45.0 6.7 52 55-115 155-210 (541)
67 TIGR02485 CobZ_N-term precorri 85.2 2.3 4.9E-05 42.8 6.7 55 53-118 132-186 (432)
68 PTZ00383 malate:quinone oxidor 84.7 3.7 8.1E-05 42.2 8.0 51 58-124 231-281 (497)
69 TIGR01320 mal_quin_oxido malat 83.5 6 0.00013 40.5 9.0 62 52-124 186-248 (483)
70 PF01134 GIDA: Glucose inhibit 83.3 2.1 4.5E-05 42.4 5.3 49 54-117 106-154 (392)
71 COG0579 Predicted dehydrogenas 81.9 5.8 0.00013 39.8 7.9 61 50-124 159-219 (429)
72 PF03486 HI0933_like: HI0933-l 81.1 5.5 0.00012 39.9 7.4 55 50-118 115-169 (409)
73 TIGR02730 carot_isom carotene 81.0 2.9 6.3E-05 42.8 5.7 55 53-121 238-292 (493)
74 COG0578 GlpA Glycerol-3-phosph 79.5 3.4 7.4E-05 42.5 5.5 57 56-124 176-233 (532)
75 TIGR02734 crtI_fam phytoene de 79.4 4 8.8E-05 41.8 6.1 54 54-121 229-282 (502)
76 KOG1238 Glucose dehydrogenase/ 79.4 1.1 2.4E-05 46.5 1.9 70 26-95 217-289 (623)
77 TIGR03862 flavo_PP4765 unchara 78.7 9.3 0.0002 37.7 8.1 54 50-119 92-145 (376)
78 PRK05257 malate:quinone oxidor 78.1 9.6 0.00021 39.2 8.3 58 56-124 196-254 (494)
79 PRK05329 anaerobic glycerol-3- 77.1 5.6 0.00012 39.9 6.2 55 53-119 268-322 (422)
80 PRK04176 ribulose-1,5-biphosph 77.0 6.2 0.00013 36.8 6.1 51 54-113 114-171 (257)
81 TIGR02731 phytoene_desat phyto 75.3 5.4 0.00012 40.3 5.6 48 57-113 226-274 (453)
82 PRK13339 malate:quinone oxidor 75.3 12 0.00025 38.6 8.0 74 40-124 176-255 (497)
83 TIGR02733 desat_CrtD C-3',4' d 74.0 6.3 0.00014 40.3 5.8 56 55-120 243-299 (492)
84 PLN02661 Putative thiazole syn 73.9 7.1 0.00015 38.1 5.7 51 53-113 182-242 (357)
85 PF12831 FAD_oxidored: FAD dep 72.3 1.2 2.6E-05 44.8 0.0 57 54-124 100-156 (428)
86 PRK13369 glycerol-3-phosphate 71.6 9 0.0002 39.4 6.2 56 54-121 165-220 (502)
87 PRK12266 glpD glycerol-3-phosp 70.9 11 0.00023 39.0 6.6 56 54-121 165-221 (508)
88 COG1053 SdhA Succinate dehydro 70.8 3.9 8.4E-05 42.7 3.3 78 56-147 151-241 (562)
89 COG2081 Predicted flavoprotein 70.2 22 0.00047 35.1 8.0 54 50-118 117-170 (408)
90 PRK07208 hypothetical protein; 68.8 11 0.00024 38.3 6.2 55 56-119 230-284 (479)
91 PF06100 Strep_67kDa_ant: Stre 68.4 18 0.0004 36.8 7.3 58 53-114 216-273 (500)
92 COG1252 Ndh NADH dehydrogenase 68.2 4.8 0.0001 40.1 3.2 39 349-390 281-320 (405)
93 PRK06185 hypothetical protein; 67.4 18 0.00038 35.8 7.2 49 55-114 120-168 (407)
94 TIGR01373 soxB sarcosine oxida 66.0 13 0.00028 36.8 5.9 58 52-124 191-248 (407)
95 TIGR02352 thiamin_ThiO glycine 65.3 9.5 0.00021 36.4 4.7 46 53-113 146-191 (337)
96 PRK08401 L-aspartate oxidase; 65.0 51 0.0011 33.5 10.1 49 346-395 310-364 (466)
97 KOG2495 NADH-dehydrogenase (ub 64.4 7.3 0.00016 38.7 3.5 45 345-395 345-390 (491)
98 PLN02487 zeta-carotene desatur 64.3 11 0.00025 39.3 5.3 60 55-120 306-365 (569)
99 PRK00711 D-amino acid dehydrog 64.3 15 0.00033 36.3 6.1 53 53-121 210-262 (416)
100 PRK05192 tRNA uridine 5-carbox 63.9 16 0.00035 38.4 6.2 46 55-115 112-157 (618)
101 PRK15317 alkyl hydroperoxide r 62.5 27 0.00058 36.1 7.6 58 56-123 399-457 (517)
102 PRK12409 D-amino acid dehydrog 62.0 25 0.00055 34.8 7.1 59 52-122 205-264 (410)
103 PF13434 K_oxygenase: L-lysine 62.0 17 0.00036 35.4 5.6 61 50-119 100-161 (341)
104 KOG4254 Phytoene desaturase [C 61.9 6.2 0.00013 39.5 2.5 56 52-121 272-327 (561)
105 TIGR02732 zeta_caro_desat caro 61.8 16 0.00034 37.4 5.6 60 55-120 230-289 (474)
106 TIGR01292 TRX_reduct thioredox 61.3 36 0.00078 31.7 7.8 56 57-123 190-246 (300)
107 PLN02172 flavin-containing mon 57.7 19 0.00042 36.6 5.4 64 50-124 116-182 (461)
108 COG3634 AhpF Alkyl hydroperoxi 57.2 28 0.0006 33.9 5.9 59 55-123 401-460 (520)
109 COG0445 GidA Flavin-dependent 57.1 7.6 0.00016 39.9 2.3 51 55-119 112-162 (621)
110 PRK11728 hydroxyglutarate oxid 56.8 30 0.00065 34.1 6.6 55 53-124 158-212 (393)
111 TIGR02733 desat_CrtD C-3',4' d 56.7 67 0.0015 32.8 9.3 71 321-396 421-491 (492)
112 KOG2311 NAD/FAD-utilizing prot 56.7 9.9 0.00021 38.4 3.0 56 55-120 136-191 (679)
113 TIGR03197 MnmC_Cterm tRNA U-34 54.7 36 0.00077 33.4 6.7 45 53-113 144-188 (381)
114 TIGR00136 gidA glucose-inhibit 54.5 25 0.00054 37.0 5.7 53 55-121 108-160 (617)
115 KOG0042 Glycerol-3-phosphate d 54.2 10 0.00023 38.8 2.7 58 55-121 235-293 (680)
116 KOG2852 Possible oxidoreductas 52.7 25 0.00055 33.3 4.8 60 53-124 157-216 (380)
117 PLN02985 squalene monooxygenas 52.2 41 0.0009 34.7 6.9 53 55-118 159-211 (514)
118 TIGR00292 thiazole biosynthesi 52.0 36 0.00077 31.6 5.9 60 56-123 112-179 (254)
119 PRK11259 solA N-methyltryptoph 50.6 32 0.00069 33.5 5.6 50 54-120 159-208 (376)
120 COG1233 Phytoene dehydrogenase 48.3 30 0.00065 35.5 5.1 54 53-121 233-286 (487)
121 TIGR03169 Nterm_to_SelD pyridi 47.9 32 0.00069 33.5 5.1 47 349-395 261-308 (364)
122 PRK10262 thioredoxin reductase 46.4 80 0.0017 30.0 7.6 59 53-121 194-254 (321)
123 PF13807 GNVR: G-rich domain o 46.1 22 0.00049 26.5 2.9 31 358-388 37-67 (82)
124 PRK06126 hypothetical protein; 46.1 46 0.00099 34.5 6.2 50 55-115 138-188 (545)
125 TIGR03140 AhpF alkyl hydropero 45.7 71 0.0015 33.0 7.5 56 56-121 400-456 (515)
126 PRK07121 hypothetical protein; 44.3 36 0.00079 34.8 5.1 56 341-396 424-490 (492)
127 COG2509 Uncharacterized FAD-de 40.7 76 0.0017 32.0 6.3 71 57-144 186-265 (486)
128 TIGR01377 soxA_mon sarcosine o 40.6 58 0.0013 31.7 5.7 54 54-124 155-208 (380)
129 TIGR01372 soxA sarcosine oxida 40.5 75 0.0016 35.8 7.1 59 55-124 362-420 (985)
130 KOG1298 Squalene monooxygenase 39.9 32 0.00069 34.0 3.5 55 53-118 157-211 (509)
131 PLN02612 phytoene desaturase 39.4 44 0.00095 35.0 4.8 44 56-112 320-363 (567)
132 PRK12810 gltD glutamate syntha 39.3 93 0.002 31.7 7.1 59 56-124 341-410 (471)
133 PTZ00318 NADH dehydrogenase-li 39.0 51 0.0011 33.0 5.1 48 349-396 298-346 (424)
134 TIGR00275 flavoprotein, HI0933 36.9 1.7E+02 0.0036 29.1 8.3 50 53-118 114-163 (400)
135 PRK07233 hypothetical protein; 34.9 54 0.0012 32.5 4.5 51 55-120 209-259 (434)
136 PRK12831 putative oxidoreducta 34.6 1.1E+02 0.0023 31.2 6.6 56 56-120 330-401 (464)
137 PRK10157 putative oxidoreducta 34.2 1.3E+02 0.0028 30.1 7.2 45 54-113 118-162 (428)
138 PRK07364 2-octaprenyl-6-methox 34.0 1E+02 0.0022 30.4 6.4 49 55-115 133-181 (415)
139 PRK06183 mhpA 3-(3-hydroxyphen 33.0 1.2E+02 0.0026 31.4 6.9 55 56-121 126-180 (538)
140 TIGR01316 gltA glutamate synth 33.0 1.3E+02 0.0028 30.5 6.9 58 55-121 320-393 (449)
141 TIGR01318 gltD_gamma_fam gluta 31.4 91 0.002 31.7 5.5 60 56-124 332-408 (467)
142 PRK12839 hypothetical protein; 31.3 82 0.0018 33.1 5.3 50 346-395 506-566 (572)
143 CHL00051 rps12 ribosomal prote 30.8 36 0.00077 27.6 1.9 23 128-150 61-83 (123)
144 PRK06327 dihydrolipoamide dehy 30.3 1E+02 0.0022 31.3 5.8 56 54-120 234-289 (475)
145 PRK04965 NADH:flavorubredoxin 30.2 1.5E+02 0.0033 28.9 6.8 57 53-124 192-248 (377)
146 PRK07818 dihydrolipoamide dehy 30.1 1E+02 0.0022 31.2 5.7 60 54-124 223-284 (466)
147 COG4895 Uncharacterized conser 30.1 37 0.0008 23.3 1.6 24 117-140 34-59 (63)
148 COG3486 IucD Lysine/ornithine 29.8 1.4E+02 0.003 29.8 6.1 56 56-121 290-347 (436)
149 PRK12843 putative FAD-binding 29.7 94 0.002 32.6 5.4 52 345-396 509-571 (578)
150 PRK08274 tricarballylate dehyd 28.3 98 0.0021 31.3 5.2 55 341-395 394-459 (466)
151 PRK12844 3-ketosteroid-delta-1 27.9 99 0.0022 32.3 5.2 52 345-396 487-549 (557)
152 PRK07057 sdhA succinate dehydr 27.2 1.1E+02 0.0024 32.2 5.5 53 343-395 358-424 (591)
153 PF01593 Amino_oxidase: Flavin 27.0 1.6E+02 0.0034 28.5 6.3 33 360-394 418-450 (450)
154 TIGR02734 crtI_fam phytoene de 26.3 2E+02 0.0044 29.3 7.1 37 356-396 455-491 (502)
155 PRK12845 3-ketosteroid-delta-1 26.3 1.3E+02 0.0028 31.5 5.7 46 349-394 507-562 (564)
156 TIGR01350 lipoamide_DH dihydro 26.3 1.3E+02 0.0028 30.3 5.6 57 55-124 222-280 (461)
157 PTZ00363 rab-GDP dissociation 25.7 1.7E+02 0.0037 29.6 6.2 47 55-114 243-289 (443)
158 PRK01747 mnmC bifunctional tRN 25.6 1.8E+02 0.0039 31.0 6.8 51 53-120 417-467 (662)
159 PRK08275 putative oxidoreducta 25.4 1E+02 0.0022 32.2 4.7 53 337-393 347-400 (554)
160 PF10865 DUF2703: Domain of un 25.4 1.5E+02 0.0033 24.1 4.7 85 270-361 20-105 (120)
161 cd03368 Ribosomal_S12 S12-like 24.9 52 0.0011 26.1 1.8 22 129-150 60-81 (108)
162 PRK06134 putative FAD-binding 24.7 1.2E+02 0.0026 31.9 5.1 50 346-395 509-569 (581)
163 PRK10015 oxidoreductase; Provi 24.4 1.5E+02 0.0033 29.7 5.7 44 55-113 119-162 (429)
164 TIGR00981 rpsL_bact ribosomal 23.9 57 0.0012 26.5 1.9 23 128-150 61-83 (124)
165 PRK05163 rpsL 30S ribosomal pr 23.7 55 0.0012 26.6 1.8 23 128-150 61-83 (124)
166 PF13434 K_oxygenase: L-lysine 23.4 1.8E+02 0.0039 28.2 5.8 48 55-112 290-338 (341)
167 COG0644 FixC Dehydrogenases (f 23.3 1.6E+02 0.0034 29.1 5.5 47 53-113 104-150 (396)
168 PLN00128 Succinate dehydrogena 22.9 1.5E+02 0.0032 31.6 5.4 50 346-395 400-464 (635)
169 COG3573 Predicted oxidoreducta 22.9 2E+02 0.0043 28.1 5.6 62 53-124 162-237 (552)
170 PRK11749 dihydropyrimidine deh 22.9 1.9E+02 0.0041 29.2 6.1 57 55-121 322-393 (457)
171 PRK12835 3-ketosteroid-delta-1 22.3 1.8E+02 0.0038 30.7 5.8 53 344-396 506-569 (584)
172 COG3380 Predicted NAD/FAD-depe 22.2 93 0.002 29.4 3.2 52 57-122 116-167 (331)
173 TIGR03833 conserved hypothetic 22.1 49 0.0011 23.3 1.1 22 118-139 34-57 (62)
174 KOG2820 FAD-dependent oxidored 22.0 1.7E+02 0.0038 28.5 5.1 56 55-123 164-219 (399)
175 PRK11445 putative oxidoreducta 22.0 2.7E+02 0.0058 26.9 6.7 51 56-118 110-160 (351)
176 PRK12769 putative oxidoreducta 21.9 1.6E+02 0.0035 31.3 5.6 52 56-116 518-585 (654)
177 PRK14989 nitrite reductase sub 21.5 2E+02 0.0044 31.8 6.2 59 53-124 196-254 (847)
178 cd02960 AGR Anterior Gradient 21.4 83 0.0018 26.0 2.5 27 262-288 102-128 (130)
179 TIGR02053 MerA mercuric reduct 21.4 1.9E+02 0.004 29.2 5.7 54 53-118 216-269 (463)
180 PRK08958 sdhA succinate dehydr 21.3 1.4E+02 0.0031 31.3 4.9 51 345-395 356-421 (588)
181 TIGR01984 UbiH 2-polyprenyl-6- 21.3 2.4E+02 0.0053 27.3 6.4 42 57-113 119-160 (382)
182 PF10555 MraY_sig1: Phospho-N- 21.1 54 0.0012 15.6 0.8 9 342-350 3-11 (13)
183 PRK08205 sdhA succinate dehydr 21.1 1.7E+02 0.0037 30.7 5.4 51 344-394 354-415 (583)
184 PRK05675 sdhA succinate dehydr 21.0 1.6E+02 0.0034 30.9 5.1 50 346-395 339-403 (570)
185 TIGR02032 GG-red-SF geranylger 20.9 2.3E+02 0.0049 26.0 5.8 47 54-114 101-147 (295)
186 PRK12842 putative succinate de 20.2 2E+02 0.0043 30.1 5.7 49 349-397 509-567 (574)
187 PRK08244 hypothetical protein; 20.1 2.6E+02 0.0056 28.5 6.4 49 55-115 111-159 (493)
188 PRK12775 putative trifunctiona 20.1 2.7E+02 0.0058 31.6 6.9 58 55-121 620-692 (1006)
189 PRK13512 coenzyme A disulfide 20.0 2E+02 0.0043 28.9 5.5 47 55-114 69-116 (438)
No 1
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=1.1e-71 Score=553.06 Aligned_cols=370 Identities=39% Similarity=0.569 Sum_probs=280.8
Q ss_pred hhHHHHHHHHHHcCCcCCCCCcccCCCceeeEEEEE---CCCCceecHHH-hhh-hc-CCCCeEEecCcEEEEEEEecCC
Q 015588 3 QWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIF---DQNGQRHTAAD-LLE-YA-NPSGLTLLLHASVHKVLFRIKG 76 (404)
Q Consensus 3 p~~~~~~~a~~~~G~~~~~~~~~d~~~g~~~g~~~~---~~~g~R~s~~~-~l~-~~-~r~nl~v~~~a~V~rv~~~~~~ 76 (404)
|....|.++..|+|. +. .|.++....|+.+. .++|.|+|++. |+. .. .|+||++..++.|+||++|..+
T Consensus 212 ~~~~~~~~ag~e~G~-~~----~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~ 286 (623)
T KOG1238|consen 212 NLFTAFHRAGTEIGG-SI----FDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAG 286 (623)
T ss_pred chhhHhHHhHHhcCC-Cc----cCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCC
Confidence 567788899999994 44 35666666665442 38999999987 875 44 4899999999999999999654
Q ss_pred CCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc--------CCCceeeecCcccCCcCcCCCCce
Q 015588 77 KARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNA 148 (404)
Q Consensus 77 ~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG--------~~gI~~~~d~p~VG~nl~DH~~~~ 148 (404)
++|.||++....|+.++++ ++||||||||||+||||||+|| ++|||++.|||+||+|||||+..+
T Consensus 287 ---~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~ 359 (623)
T KOG1238|consen 287 ---KRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNP 359 (623)
T ss_pred ---ceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccc
Confidence 5899999986337888886 8999999999999999999999 999999999999999999999987
Q ss_pred eeeeCCCCccchhhhhhccchhhhhHHhhccccccCCCCCCCcccccCcccCccc-cCCC-----------CCC------
Q 015588 149 IFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLS-KVPP-----------KQR------ 210 (404)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~------ 210 (404)
++.....+......+..+......|+....|+..... ...++++........ .+|+ ...
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~---~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~ 436 (623)
T KOG1238|consen 360 GFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPG---VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRK 436 (623)
T ss_pred eeeecCCCccccccccccchHHHHHHHcCCCCcccCc---ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhh
Confidence 7666555543333344444556677777777633211 112333332211100 0110 000
Q ss_pred -ChHHHHHHHhhhccCCCCCCCcceeeeeecccccceEEEeccCCCCCCCeeeCCCCCChhhHHHHHHHHHHHHHHHccc
Q 015588 211 -TPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESK 289 (404)
Q Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~l~s~dp~~~P~I~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 289 (404)
..++++..+.... ....+.+++.+++|.|||+++|+|+||.+.|+|++||+++|+|++.+++|++.+.++.+++
T Consensus 437 ~~~~~y~~~~~~~~-----~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~ 511 (623)
T KOG1238|consen 437 ALGEIYQALFGELT-----NSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSK 511 (623)
T ss_pred hcchHHHHhhhhhh-----cCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCH
Confidence 0011111111110 0112456778899999999999999999999999999999999999999999999999999
Q ss_pred cccccccccC--chhhhhccccCCCCCCCCCCCCChHHHHHHHHhhcccccccccccCCC------ceecCCCeeeeccC
Q 015588 290 SFSKFKYESM--SVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDA 361 (404)
Q Consensus 290 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~i~~~~~~~~H~~GTcrMG------~VVD~~lrV~Gv~n 361 (404)
+|+++..... +.++|... ...+|++|+||+|..+.|.||++|||+|| +|||+++|||||+|
T Consensus 512 af~~~~~r~~~~~~~~c~~~-----------~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~ 580 (623)
T KOG1238|consen 512 AFQRFGARLWKKPVPGCDLL-----------AFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRG 580 (623)
T ss_pred HHHHhcchhccccCCCcccc-----------cCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccC
Confidence 9999886532 23333211 24789999999999999999999999999 89999999999999
Q ss_pred ceEeeccccCCCCCCChHHHHHHHHHHHHHHHHhhhhcccCC
Q 015588 362 LRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDS 403 (404)
Q Consensus 362 LrVvDaSv~P~~~~~np~~t~~aiaer~A~~ii~~~~~~~~~ 403 (404)
||||||||||.+|++||++|++|||||+|+.|++++....++
T Consensus 581 LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~~~ 622 (623)
T KOG1238|consen 581 LRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLANKDG 622 (623)
T ss_pred ceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999999999999999999887666665554443
No 2
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=2.3e-70 Score=562.37 Aligned_cols=399 Identities=62% Similarity=1.032 Sum_probs=282.2
Q ss_pred chhHHHHHHHHHHcCCcCCCCCcccCCCceeeEEEEECCCCceecHHHhhhhcCCCCeEEecCcEEEEEEEecCCCCCCe
Q 015588 2 RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPV 81 (404)
Q Consensus 2 ~p~~~~~~~a~~~~G~~~~~~~~~d~~~g~~~g~~~~~~~g~R~s~~~~l~~~~r~nl~v~~~a~V~rv~~~~~~~~~~~ 81 (404)
+|+...|.++++++|++++|++..|+..|...|.+++++.|.|++++.+++.+.++||+|+++++|+||+|++++ .+++
T Consensus 178 ~~~~~~~~~a~~e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~-~~~r 256 (587)
T PLN02785 178 APWQAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSG-KRPR 256 (587)
T ss_pred ChHHHHHHHHHHHcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCC-CCce
Confidence 578899999999999988887666777788888888778899999888777777899999999999999998642 2248
Q ss_pred EEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc--------CCCceeeecCcccCCcCcCCCCceeeeeC
Q 015588 82 AHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPS 153 (404)
Q Consensus 82 a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG--------~~gI~~~~d~p~VG~nl~DH~~~~~~~~~ 153 (404)
|+||+|.+.+|+.+++.+..+++||||||||+|+||+|||+|| ++||++++|+|+||+|||||+...+.+..
T Consensus 257 a~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~ 336 (587)
T PLN02785 257 ATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPS 336 (587)
T ss_pred EEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEe
Confidence 9999998766765554321125799999999999999999999 89999999999999999999998888776
Q ss_pred CCCccchhhhhhccchhhhhHHhhccccccCCCCCCCcccccCcccCccccCCCCCCChHHHHHHHhhhccCCCCCCCcc
Q 015588 154 PVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGG 233 (404)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (404)
+.+......+.++....+.|.....++.... .......+.+......+...++....++....+...........+...
T Consensus 337 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (587)
T PLN02785 337 KAPVEQSLIQTVGITKMGVYIEASSGFGQSP-DSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGG 415 (587)
T ss_pred CCCchhhhHhhhhhhccccceecccccccCc-hhhhhhccccccccccccccCcccccchhhhhhccCcccccccccccc
Confidence 6543211111111111112211111110000 000000011111011111122222222222222111001111112223
Q ss_pred eeeeeecccccceEEEeccCCCCCCCeeeCCCCCChhhHHHHHHHHHHHHHHHccccccccccccC-chhhhhccccCCC
Q 015588 234 FILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESM-SVPILVNMTASAP 312 (404)
Q Consensus 234 ~~~~~~~~P~srG~V~l~s~dp~~~P~I~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 312 (404)
++...+++|.|||+|+|+|+||.+.|.|++||++||.|++.+++++|++++++++++++.+...+. +..++.+.....+
T Consensus 416 ~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (587)
T PLN02785 416 FILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKAN 495 (587)
T ss_pred eEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccc
Confidence 455677899999999999999999999999999999999999999999999999998887653211 0011111000011
Q ss_pred CCCCCCCCCChHHHHHHHHhhcccccccccccCCCceecCCCeeeeccCceEeeccccCCCCCCChHHHHHHHHHHHHHH
Q 015588 313 VNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVR 392 (404)
Q Consensus 313 ~~~~p~~~~~d~~~~~~i~~~~~~~~H~~GTcrMG~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~t~~aiaer~A~~ 392 (404)
....|....+|++|++|+|++..+.||++|||+||+|||++||||||+|||||||||||.+|++|||+|+||||||+|++
T Consensus 496 ~~~~p~~~~~d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~ 575 (587)
T PLN02785 496 INLIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVK 575 (587)
T ss_pred cccCCCCCCCHHHHHHHHHHhcccccCCcccccCCCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHH
Confidence 11234334678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccC
Q 015588 393 ILSERLASND 402 (404)
Q Consensus 393 ii~~~~~~~~ 402 (404)
|++++++...
T Consensus 576 Il~~~~~~~~ 585 (587)
T PLN02785 576 ILRERLGRAA 585 (587)
T ss_pred HHHHhhhhhc
Confidence 9999877543
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=4e-61 Score=494.07 Aligned_cols=354 Identities=25% Similarity=0.329 Sum_probs=250.3
Q ss_pred chhHHHHHHHHHHcCCcCCCCCcccCCCceeeEEEE---ECCCCceecHHH-hhh-hcCCCCeEEecCcEEEEEEEecCC
Q 015588 2 RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTI---FDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKG 76 (404)
Q Consensus 2 ~p~~~~~~~a~~~~G~~~~~~~~~d~~~g~~~g~~~---~~~~g~R~s~~~-~l~-~~~r~nl~v~~~a~V~rv~~~~~~ 76 (404)
++..+.|.++++++|++... |.+.+...|.+. .+.+|+|+++.. |++ +..|+||+|+++++|+||+++++
T Consensus 151 ~~~~~~~~~a~~~~G~~~~~----~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~- 225 (532)
T TIGR01810 151 NPLFQAFIEAGVEAGYNKTP----DVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN- 225 (532)
T ss_pred CHHHHHHHHHHHHcCCCccC----CCCCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC-
Confidence 35678899999999984332 333333333222 236899999886 887 55689999999999999999843
Q ss_pred CCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc--------CCCceeeecCcccCCcCcCCCCce
Q 015588 77 KARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNA 148 (404)
Q Consensus 77 ~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG--------~~gI~~~~d~p~VG~nl~DH~~~~ 148 (404)
+|+||++.+ .+...++. ++||||||||||+||+|||+|| ++||++++|||+||+|||||+...
T Consensus 226 ----ra~GV~~~~-~~~~~~~~----~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~ 296 (532)
T TIGR01810 226 ----RATGVEFKK-GGRKEHTE----ANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVY 296 (532)
T ss_pred ----eEEEEEEEe-CCcEEEEE----EeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccce
Confidence 799999986 34444443 7899999999999999999999 889999999999999999999988
Q ss_pred eeeeCCCCccc-hhhhhh-ccchhhhhHHhhccccccCCCCCCCcccccCcccCccccCCCCCCChHHHHHHHh---hhc
Q 015588 149 IFVPSPVPVEV-SLIQVV-GITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIE---NMK 223 (404)
Q Consensus 149 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 223 (404)
+.+.++.+... ...... .......|.....|..... .....+++..... ...| ++...+.. ...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~--~~~p------~~~~~~~~~~~~~~ 365 (532)
T TIGR01810 297 VQHACKQPVSLYPSLNWLKQPFIGAQWLFGRKGAGASN---HFEGGGFVRSNDD--VDYP------NIQYHFLPVAIRYD 365 (532)
T ss_pred eEEEecCCcccccccchhhhhHHHHHHHhcCCCCcccc---ccceeEEEecCCC--CCCC------CeEEEEEeeeeccC
Confidence 88876654211 000000 0001112332223321100 0000011110000 0000 00000000 000
Q ss_pred cCCCCCCCcceeeeeecccccceEEEeccCCCCCCCeeeCCCCCChhhHHHHHHHHHHHHHHHccccccccccccCchhh
Q 015588 224 ALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 303 (404)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~P~srG~V~l~s~dp~~~P~I~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 303 (404)
...........+....++|.|||+|+|+++||++.|.|+++|+.+|.|++.|+++++++++++++.+++.+...+
T Consensus 366 ~~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~----- 440 (532)
T TIGR01810 366 GTKAPKAHGFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGE----- 440 (532)
T ss_pred CCCCCCCCcEEEEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccc-----
Confidence 000000111234456789999999999999999999999999999999999999999999999988877654221
Q ss_pred hhccccCCCCCCCC-CCCCChHHHHHHHHhhcccccccccccCCC------ceecCCCeeeeccCceEeeccccCCCCCC
Q 015588 304 LVNMTASAPVNLLP-RHSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSPGT 376 (404)
Q Consensus 304 ~~~~~~~~~~~~~p-~~~~~d~~~~~~i~~~~~~~~H~~GTcrMG------~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~ 376 (404)
..| ....+|++|++|+|+...+.+|++|||||| +|||++||||||+|||||||||||+++++
T Consensus 441 -----------~~p~~~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~ 509 (532)
T TIGR01810 441 -----------ISPGPEVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNG 509 (532)
T ss_pred -----------cCCCCCCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCC
Confidence 122 234789999999999999999999999999 49999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhh
Q 015588 377 NPQATVMMLGRYMGVRILSE 396 (404)
Q Consensus 377 np~~t~~aiaer~A~~ii~~ 396 (404)
||++|+||||||+|+.|+++
T Consensus 510 n~~~t~~aiaeraAd~I~~~ 529 (532)
T TIGR01810 510 NLNAPVIMMGEKAADIIRGK 529 (532)
T ss_pred ccHHHHHHHHHHHHHHHhcc
Confidence 99999999999999877654
No 4
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=6.9e-61 Score=494.91 Aligned_cols=357 Identities=25% Similarity=0.320 Sum_probs=251.4
Q ss_pred chhHHHHHHHHHHcCCcCCCCCcccCCCceeeEEEE---ECCCCceecHHH-hhh-hcCCCCeEEecCcEEEEEEEecCC
Q 015588 2 RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTI---FDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKG 76 (404)
Q Consensus 2 ~p~~~~~~~a~~~~G~~~~~~~~~d~~~g~~~g~~~---~~~~g~R~s~~~-~l~-~~~r~nl~v~~~a~V~rv~~~~~~ 76 (404)
+|..+.|.++++++|++... |.+.+...|.+. .+.+|.|+++.. ||+ +..++||+|+++++|+||+++++
T Consensus 158 ~~~~~~~~~a~~~lG~~~~~----~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~- 232 (560)
T PRK02106 158 NPLFQAFVEAGVQAGYPRTD----DLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK- 232 (560)
T ss_pred CHHHHHHHHHHHHcCCCcCC----CCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC-
Confidence 45678899999999984332 333333333322 246899999886 887 55689999999999999999843
Q ss_pred CCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc--------CCCceeeecCcccCCcCcCCCCce
Q 015588 77 KARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNA 148 (404)
Q Consensus 77 ~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG--------~~gI~~~~d~p~VG~nl~DH~~~~ 148 (404)
+|+||++.+.. ..+++. ++||||||||+|+||+|||+|| ++||++++|||+||+|||||+...
T Consensus 233 ----~a~GV~~~~~~-~~~~~~----~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~ 303 (560)
T PRK02106 233 ----RAVGVEYERGG-GRETAR----ARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVY 303 (560)
T ss_pred ----eEEEEEEEeCC-cEEEEE----eeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccce
Confidence 79999998743 334443 7899999999999999999999 789999999999999999999988
Q ss_pred eeeeCCCCccch-hhhhh-ccchhhhhHHhhccccccCCCCCCCcccccCcccCccccCCCCCCChHHHHHHHhhhccCC
Q 015588 149 IFVPSPVPVEVS-LIQVV-GITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALD 226 (404)
Q Consensus 149 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (404)
+.+.++.+.... ..... .......|.....|+ +... .....++..... .. ..|. ... ......+... ...
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~--~~~~~~~~~~~~-~~-~~p~-~~~-~~~~~~~~~~-~~~ 375 (560)
T PRK02106 304 IQYECKQPVSLYPALKWWNKPKIGAEWLFTGTGL-GASN--HFEAGGFIRSRA-GV-DWPN-IQY-HFLPVAIRYD-GSN 375 (560)
T ss_pred EEEEeCCCcccccccchhhhhHHHHHHHhcCCCC-cccc--ccceeeEEecCC-CC-CCCC-eEE-EEeecccccc-CCC
Confidence 877766542210 00000 000112233323332 1100 000001111000 00 0000 000 0000000000 000
Q ss_pred CCCCCcceeeeeecccccceEEEeccCCCCCCCeeeCCCCCChhhHHHHHHHHHHHHHHHccccccccccccCchhhhhc
Q 015588 227 DPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVN 306 (404)
Q Consensus 227 ~~~~~~~~~~~~~~~P~srG~V~l~s~dp~~~P~I~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 306 (404)
........+...+++|+|||+|+|+++||++.|.|+++|+.+|.|++.|+++++++++++++++++.+...+
T Consensus 376 ~~~~~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~-------- 447 (560)
T PRK02106 376 AVKGHGFQAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGRE-------- 447 (560)
T ss_pred CCCCCeEEEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccc--------
Confidence 000111234456789999999999999999999999999999999999999999999999998877654321
Q ss_pred cccCCCCCCCCC-CCCChHHHHHHHHhhcccccccccccCCC----ceecCCCeeeeccCceEeeccccCCCCCCChHHH
Q 015588 307 MTASAPVNLLPR-HSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQAT 381 (404)
Q Consensus 307 ~~~~~~~~~~p~-~~~~d~~~~~~i~~~~~~~~H~~GTcrMG----~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~t 381 (404)
..|. ...+|++|++|+++...+.+|++|||||| +|||++|||||++||||||+||||+++++||++|
T Consensus 448 --------~~p~~~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~t 519 (560)
T PRK02106 448 --------ISPGADVQTDEEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAP 519 (560)
T ss_pred --------cCCCcccCCHHHHHHHHHhccCcCcccCCCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHH
Confidence 1222 24678999999999999999999999999 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 015588 382 VMMLGRYMGVRILSE 396 (404)
Q Consensus 382 ~~aiaer~A~~ii~~ 396 (404)
+||||||+|+.|+++
T Consensus 520 i~aiaeraAd~I~~~ 534 (560)
T PRK02106 520 TIMIAEKAADLIRGR 534 (560)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999877654
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-53 Score=432.52 Aligned_cols=352 Identities=26% Similarity=0.342 Sum_probs=252.8
Q ss_pred chhHHHHHHHHHHcCCcCCCCCcccCCCceeeEEE---EECCCCceecHHH-hhh-hcCCCCeEEecCcEEEEEEEecCC
Q 015588 2 RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGT---IFDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKG 76 (404)
Q Consensus 2 ~p~~~~~~~a~~~~G~~~~~~~~~d~~~g~~~g~~---~~~~~g~R~s~~~-~l~-~~~r~nl~v~~~a~V~rv~~~~~~ 76 (404)
.|+...|.+++.++|++.+. |.+.+...|.+ ..+.+|.|++++. ||+ +.+++||+|++++.|+||+++++
T Consensus 160 ~~~~~a~~~a~~~~G~~~~~----~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~- 234 (542)
T COG2303 160 NPIARAFIEAGEQLGFPTTP----DPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD- 234 (542)
T ss_pred hHHHHHHHHHHHHcCCCcCc----ccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC-
Confidence 46888999999999985443 33333333322 2234999999987 887 67899999999999999999986
Q ss_pred CCCCeEEEEEEEeCCCc-eeEEEeecCCCceEEEecCCcCchHHHHhhc--------CCCceeeecCcccCCcCcCCCCc
Q 015588 77 KARPVAHGVVFRDATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMN 147 (404)
Q Consensus 77 ~~~~~a~GV~~~~~~g~-~~~v~~~~~a~keVILsAGai~TP~LLl~SG--------~~gI~~~~d~p~VG~nl~DH~~~ 147 (404)
+++||++...++. ...+. +++|||||||+|+||+|||+|| .+||+++.++|+||+|||||...
T Consensus 235 ----r~~gv~~~~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~ 306 (542)
T COG2303 235 ----RAVGVEVEIGDGGTIETAV----AAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI 306 (542)
T ss_pred ----eeEEEEEEeCCCCceEEEe----cCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhh
Confidence 7999999863332 23333 7999999999999999999999 78999999999999999999998
Q ss_pred eeeeeCCCCccchhhhhhccchh--hhhHHhhccccccCCCCCCCcccccCcccCccccCCCCCCChHHHHHHHhhhccC
Q 015588 148 AIFVPSPVPVEVSLIQVVGITQF--GSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL 225 (404)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (404)
.+.+..+................ ..|.....|.... .....+|+.. .+....++... .++.....
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~----~~~~~gf~~~--------~~~~~~p~~~~-~~~~~~~~ 373 (542)
T COG2303 307 YVAFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGAT----NHFEGGFVRS--------GPAGEYPDGQY-HFAPLPLA 373 (542)
T ss_pred hhheeccCccccccccccccccccceeEEeecCCCccc----cccccccccc--------CccccCCCccc-cccccccc
Confidence 88776665431111000011110 1122222332100 0001111111 00011111100 01000000
Q ss_pred --CCCCCCcceeeeeecccccceEEEeccCCCCCCCeeeCCCCCChhhHHHHHHHHHHHHHHHccccccccccccCchhh
Q 015588 226 --DDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 303 (404)
Q Consensus 226 --~~~~~~~~~~~~~~~~P~srG~V~l~s~dp~~~P~I~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 303 (404)
........++.....+|.|||.|++++.||...|.|+++|++++.|++.+.++++..++++.+..+..+...+
T Consensus 374 ~~~~~~~~~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e----- 448 (542)
T COG2303 374 IRAAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAE----- 448 (542)
T ss_pred ccccccCCccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHh-----
Confidence 0011223456677899999999999999999999999999999999999999999999999976666554322
Q ss_pred hhccccCCCCCCCCC-CCCChHHHHHHHHhhcccccccccccCCC----c-eecCCCeeeeccCceEeeccccCCCCCCC
Q 015588 304 LVNMTASAPVNLLPR-HSNASTSLEQFCRDTVMTIWHYHGGCQVG----K-VVDHDYKVLGVDALRVIDGSTFYYSPGTN 377 (404)
Q Consensus 304 ~~~~~~~~~~~~~p~-~~~~d~~~~~~i~~~~~~~~H~~GTcrMG----~-VVD~~lrV~Gv~nLrVvDaSv~P~~~~~n 377 (404)
..|. ...+++++..|++....+.+|++|||||| . |+|++|||||++||||||||+||+++++|
T Consensus 449 -----------~~~~~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~N 517 (542)
T COG2303 449 -----------LAPGPRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVN 517 (542)
T ss_pred -----------hcCCCccccHHHHHHHHHhccCccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCC
Confidence 2232 45788899999999999999999999999 3 55599999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 015588 378 PQATVMMLGRYMGVRILS 395 (404)
Q Consensus 378 p~~t~~aiaer~A~~ii~ 395 (404)
|++|++|||||+|++|++
T Consensus 518 p~~ti~ala~raA~~I~~ 535 (542)
T COG2303 518 PNLTIIALAERAADHILG 535 (542)
T ss_pred ccHhHHHHHHHHHHHHhh
Confidence 999999999999998876
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=8.8e-38 Score=315.71 Aligned_cols=312 Identities=16% Similarity=0.191 Sum_probs=194.1
Q ss_pred CCCceecHH-Hhhh-hc----CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecC
Q 015588 40 QNGQRHTAA-DLLE-YA----NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAG 112 (404)
Q Consensus 40 ~~g~R~s~~-~~l~-~~----~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAG 112 (404)
..+.|+|+. +.++ +. .++|++|++++.|+||+++.++ ..+|+||+|.+. +|+.++++ +|.||||||
T Consensus 204 ~~~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~--~~~v~~v~~~d~~~g~~~~v~-----A~~vVLAag 276 (544)
T TIGR02462 204 PTYVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETN--ESEIEAALVRDLLSGDRFEIK-----ADVYVLACG 276 (544)
T ss_pred CccceecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCC--CceeEEEEEEECCCCcEEEEE-----CCEEEEccC
Confidence 457788764 3443 22 4789999999999999998642 137999999985 57777774 689999999
Q ss_pred CcCchHHHHhhc--CCC--ceeeec--CcccCCcCcCCCCceeeeeCCCCccchhhhhhccchhhhhHHhhccccccCC-
Q 015588 113 ALGSPQLLMLSG--AHN--ITVVLD--QPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGG- 185 (404)
Q Consensus 113 ai~TP~LLl~SG--~~g--I~~~~d--~p~VG~nl~DH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 185 (404)
+|+||||||+|+ ..+ -++.+. ++.||||||||+...+.+.++.+....+. +......|............
T Consensus 277 aIetpRLLL~S~~~~~~~p~gl~Nss~~g~VGRnlmdh~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 353 (544)
T TIGR02462 277 AVHNPQILVNSGFGQLGRPDPTNPPPLLPSLGRYITEQSMTFCQIVLSTELVDSVR---SDPRGLDWWKEKVANHMMKHP 353 (544)
T ss_pred chhhHHHHHhCCCCCCcCCCCcCCCCCCCCCCcchhcCCCccEEEEecchhhhhcc---CCccccccccccchhhhcccc
Confidence 999999999998 211 122333 48999999999998777666554211010 00000011100000000000
Q ss_pred -CCCCCccc-ccCcccCccc-cCCCCCCChHHHHHHHh--hh-ccCCCCCCCcceeeeeecccccceEEEecc--CCCCC
Q 015588 186 -SPSPRDYG-MFSPKIGQLS-KVPPKQRTPEAIAEAIE--NM-KALDDPAFRGGFILEKVMGPVSTGHLELRT--RNPND 257 (404)
Q Consensus 186 -~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~P~srG~V~l~s--~dp~~ 257 (404)
......+. ........+. ..+ +.. ......+. .. ........ ...-......|...++|+|++ +|.++
T Consensus 354 ~~~~~i~~~~~~~~~~~~~~~~~~--w~~-~~~~~~~~~g~~~~~~~~~~~-v~l~~~~e~lP~~~NrV~Ld~~~~D~~G 429 (544)
T TIGR02462 354 EDPLPIPFRDPEPQVTTPFTEEHP--WHT-QIHRDAFSYGAVGPSIDSRVI-VDLRFFGRTEPKEENKLVFQDKVTDTYN 429 (544)
T ss_pred CCcccccccccCcccccccccccc--cch-hhhhhhhhcccccccccccce-eeEEEEeccCCCCCCeEEcCCCCcCCCC
Confidence 00000000 0000000000 000 000 00000000 00 00000000 001112234477777999975 59999
Q ss_pred CCeeeCCCCCChhhHHHHHHHHHHHHHHHccccccccccccCchhhhhccccCCCCCCCCCCCCChHHHHHHHHhhcccc
Q 015588 258 NPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTI 337 (404)
Q Consensus 258 ~P~I~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~i~~~~~~~ 337 (404)
.|++..+|-.++.|++.+.++++.+.++++..+...... .+ .|. .....
T Consensus 430 ~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~~~G~~~~~~-------------------~~----------~~~--~~~~~ 478 (544)
T TIGR02462 430 MPQPTFDFRFSAADSKRARRMMTDMCNVAAKIGGYLPGS-------------------LP----------QFM--EPGLA 478 (544)
T ss_pred CeeEEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCcccc-------------------cc----------ccc--CCCcc
Confidence 999999998899999999999999999987654321110 00 000 11347
Q ss_pred cccccccCCC-----ceecCCCeeeeccCceEeeccccCCCCCCChHHHHHHHHHHHHHHHHhh
Q 015588 338 WHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 396 (404)
Q Consensus 338 ~H~~GTcrMG-----~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~t~~aiaer~A~~ii~~ 396 (404)
+|++|||||| +|||++|||||++||||+|+|+||+.+++||++|+||+|+|+|++|+++
T Consensus 479 ~H~~Gt~rMG~dp~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~ 542 (544)
T TIGR02462 479 LHLAGTTRIGFDEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINN 542 (544)
T ss_pred ccCCCCeecCCCCCCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 8999999999 7999999999999999999999999999999999999999999888764
No 7
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=1.2e-36 Score=259.63 Aligned_cols=138 Identities=36% Similarity=0.627 Sum_probs=110.5
Q ss_pred cccceEEEeccCCCCCCCeeeCCCCCChhhHHHHHHHHHHHHHHHccccccccccccCchhhhhccccCCCCCCCC-CCC
Q 015588 242 PVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLP-RHS 320 (404)
Q Consensus 242 P~srG~V~l~s~dp~~~P~I~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~ 320 (404)
|+|||+|+|+++||++.|.|+++|+.++.|++.++++++.+++++++. ++++...+.. +. +....+ ...
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~-~~--------~~~~~~~~~~ 70 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELL-PG--------PSPFCPDASL 70 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEE-SC--------GCSCCGCSTT
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hccccccccc-cc--------cccccccccc
Confidence 899999999999999999999999999999999999999999999988 6665422110 00 000011 134
Q ss_pred CChHHHHHHHHhhcccccccccccCCC-----ceecCCCeeeeccCceEeeccccCCCCCCChHHHHHHHHHHH
Q 015588 321 NASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYM 389 (404)
Q Consensus 321 ~~d~~~~~~i~~~~~~~~H~~GTcrMG-----~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~t~~aiaer~ 389 (404)
.++++|++|+++...+.+|++|||||| +|||++|||||++||||+||||||+.+++||++|+||||||+
T Consensus 71 ~~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 71 DSDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp TCHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred ccchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 678899999999999999999999999 999999999999999999999999999999999999999994
No 8
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.93 E-value=3.2e-26 Score=218.64 Aligned_cols=132 Identities=36% Similarity=0.521 Sum_probs=104.0
Q ss_pred chhHHHHHHHHHHcCCcCCCCCcccCCCceeeEEEE---ECCCCceecHHH-hhh-hcCCCCeEEecCcEEEEEEEecCC
Q 015588 2 RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTI---FDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKG 76 (404)
Q Consensus 2 ~p~~~~~~~a~~~~G~~~~~~~~~d~~~g~~~g~~~---~~~~g~R~s~~~-~l~-~~~r~nl~v~~~a~V~rv~~~~~~ 76 (404)
.|..+.|.++++++|++ .. .+.+.+..+|.+. .+++|.|+|++. ||+ +..++|++|+++++|+||++++++
T Consensus 150 ~~~~~~~~~a~~~~G~~-~~---~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~ 225 (296)
T PF00732_consen 150 SPMNQALMDAAEELGIP-VP---QDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG 225 (296)
T ss_dssp CTHHHHHHHHHHHTTHH-BC---SCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS
T ss_pred CHHHHHHHHHHHHcCCc-cc---cccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc
Confidence 36778899999999984 32 2334455555443 268999999876 887 667889999999999999997543
Q ss_pred CCCCeEEEEEEEeCCCc-eeEEEeecCCCceEEEecCCcCchHHHHhhc--------CCCceeeecCcccCCcCcCCC
Q 015588 77 KARPVAHGVVFRDATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNP 145 (404)
Q Consensus 77 ~~~~~a~GV~~~~~~g~-~~~v~~~~~a~keVILsAGai~TP~LLl~SG--------~~gI~~~~d~p~VG~nl~DH~ 145 (404)
.+|+||++.+.++. .+++. ++|+||||||||+||+|||+|| ++||++++|+| ||+||||||
T Consensus 226 ---~~a~gV~~~~~~~~~~~~~~----~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~ 295 (296)
T PF00732_consen 226 ---GRATGVEYVDNDGGVQRRIV----AAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHP 295 (296)
T ss_dssp ---TEEEEEEEEETTTSEEEEEE----EEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--E
T ss_pred ---cceeeeeeeecCCcceeeec----cceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhccc
Confidence 58999999986665 23333 6899999999999999999999 78999999999 999999997
No 9
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.79 E-value=0.0041 Score=65.07 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=47.3
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCc-hHHHH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM 121 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~T-P~LLl 121 (404)
.+...|++|++++.|++|+.|+++ +++||.+.. +|+.++++ ++|-||||+|.++. |.+|.
T Consensus 222 ~~~~~gv~i~~~~~~~~Li~d~~g----~V~Gv~~~~-~~~~~~i~----a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 222 ALKDAGVPLWLDSPMTELITDPDG----AVVGAVVER-EGRTLRIG----ARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHhCCceEEeCCEEEEEEECCCC----cEEEEEEEe-CCcEEEEE----eceeEEEecCcccCCHHHHH
Confidence 345679999999999999997543 799999864 67666664 66789999999885 66654
No 10
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.30 E-value=0.014 Score=60.22 Aligned_cols=57 Identities=14% Similarity=0.267 Sum_probs=45.0
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcC-chHHHH
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG-SPQLLM 121 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~-TP~LLl 121 (404)
.+++++|++++.|++|+.+++ +++||++.. +|+.++++ ++|.||||+|.++ ++.++.
T Consensus 185 ~~~gv~i~~~t~~~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 185 RFPNARLRLNTPLVELVVEDG-----RVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred hCCCCEEEeCCEEEEEEecCC-----EEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCHHHHH
Confidence 446999999999999998743 799999864 56666664 6779999999996 455554
No 11
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.09 E-value=0.02 Score=59.72 Aligned_cols=59 Identities=14% Similarity=0.268 Sum_probs=45.2
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl 121 (404)
...+.+++|++++.|++|+.+++ +++||++.. +|+.+++. +++.||||+|.+.+-+-|+
T Consensus 217 ~~~~~gv~v~~~t~v~~l~~~~g-----~v~Gv~~~~-~g~~~~i~----A~~~VIlAtGG~~~n~~m~ 275 (557)
T PRK07843 217 GLQRAGVPVLLNTPLTDLYVEDG-----RVTGVHAAE-SGEPQLIR----ARRGVILASGGFEHNEQMR 275 (557)
T ss_pred HHHcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEe-CCcEEEEE----eceeEEEccCCcCcCHHHH
Confidence 33567999999999999998743 799999864 56666664 6678999999988744443
No 12
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.94 E-value=0.024 Score=59.09 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=45.9
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCc-hHHHH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM 121 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~T-P~LLl 121 (404)
.+.+.+++|++++.|++|+.+++ +++||++.. +|+.++++ ++|-||||+|.+.. +.++.
T Consensus 217 ~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N~em~~ 276 (557)
T PRK12844 217 AALAAGVPLWTNTPLTELIVEDG-----RVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHNAEMRK 276 (557)
T ss_pred HHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEEEE-CCeEEEEE----ecceEEEecCCccCCHHHHH
Confidence 34567999999999999998753 799999875 57666664 66789999998876 44443
No 13
>PRK12839 hypothetical protein; Provisional
Probab=95.90 E-value=0.024 Score=59.27 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=44.3
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCc-hHHH
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLL 120 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~T-P~LL 120 (404)
+.+.+++|++++.|++|+.++++ +++||.+.+.+|+ .++. ++|.||||+|.+.. +.++
T Consensus 224 a~~~Gv~i~~~t~v~~Li~~~~g----~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 224 ADDLGVDLRVSTSATSLTTDKNG----RVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHHCCCEEEcCCEEEEEEECCCC----cEEEEEEEeCCCc-EEEE----eCCEEEEcCCCcccCHHHH
Confidence 34568999999999999986543 7999998765554 3443 67999999999886 4443
No 14
>PRK07121 hypothetical protein; Validated
Probab=95.71 E-value=0.033 Score=57.17 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=46.2
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCc-hHHHHh
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLML 122 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~T-P~LLl~ 122 (404)
.+.+.+++|++++.|++|+.++++ +++||++.+ +++.++++ ++|.||||+|.+.. |.++..
T Consensus 186 ~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em~~~ 247 (492)
T PRK07121 186 RAAALGVQIRYDTRATRLIVDDDG----RVVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREMVAR 247 (492)
T ss_pred HHHhCCCEEEeCCEEEEEEECCCC----CEEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHHHHH
Confidence 345578999999999999987543 799999865 55555564 55999999998764 555543
No 15
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.40 E-value=0.042 Score=55.91 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=47.2
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhh
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 123 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~S 123 (404)
.+.+.+++|++++.|++|+.+++ +++||.+.+.+|+...++ +|.||||+|.+...+.|+.+
T Consensus 140 ~~~~~gv~i~~~t~v~~l~~~~g-----~v~gv~~~~~~g~~~~i~-----a~~VIlAtGg~~~n~~~~~~ 200 (466)
T PRK08274 140 SAERLGVEIRYDAPVTALELDDG-----RFVGARAGSAAGGAERIR-----AKAVVLAAGGFESNREWLRE 200 (466)
T ss_pred HHHHCCCEEEcCCEEEEEEecCC-----eEEEEEEEccCCceEEEE-----CCEEEECCCCCCCCHHHHHh
Confidence 33456899999999999998643 699999864456555553 58999999999988776654
No 16
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.26 E-value=0.054 Score=56.49 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=44.3
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCc-hHHHH
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM 121 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~T-P~LLl 121 (404)
+.+.+++|++++.|++|+.++ + +++||.+.. +|+...++ ++|-||||+|.++. +.++.
T Consensus 227 ~~~~Gv~i~~~t~v~~Li~~~-g----~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~em~~ 285 (564)
T PRK12845 227 VLRAGIPIWTETSLVRLTDDG-G----RVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDMEMRW 285 (564)
T ss_pred HHHCCCEEEecCEeeEEEecC-C----EEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccHHHHH
Confidence 345689999999999999753 3 799998865 56555554 78899999999885 44443
No 17
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.23 E-value=0.023 Score=53.58 Aligned_cols=49 Identities=24% Similarity=0.441 Sum_probs=41.0
Q ss_pred CeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCc
Q 015588 58 GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 58 nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
-+.|+++++|++|+-+++ +++||+|.|.+|+...+ ....||||.|.+.-
T Consensus 159 ~~ki~~nskvv~il~n~g-----kVsgVeymd~sgek~~~-----~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNNG-----KVSGVEYMDASGEKSKI-----IGDAVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecCCC-----eEEEEEEEcCCCCccce-----ecCceEEecCCcCc
Confidence 479999999999994443 79999999988887665 47899999998874
No 18
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=94.93 E-value=0.076 Score=53.05 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=41.2
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCchHHHHh
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 122 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~ 122 (404)
..+.+|+.+++|++|+.+++ +++||++.+ .+|+.++++ ++.||||+|.+.. .++..
T Consensus 153 ~~gv~i~~~~~~~~Li~e~g-----~V~Gv~~~~~~~g~~~~i~-----A~aVIlAtGG~~~-~~~~~ 209 (417)
T PF00890_consen 153 EAGVDIRFNTRVTDLITEDG-----RVTGVVAENPADGEFVRIK-----AKAVILATGGFGG-ELLRQ 209 (417)
T ss_dssp HTTEEEEESEEEEEEEEETT-----EEEEEEEEETTTCEEEEEE-----ESEEEE----BGG-HHHHH
T ss_pred hcCeeeeccceeeeEEEeCC-----ceeEEEEEECCCCeEEEEe-----eeEEEeccCcccc-ccccc
Confidence 34699999999999999854 799999984 357767764 4699999999999 55543
No 19
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=94.80 E-value=0.099 Score=53.99 Aligned_cols=58 Identities=19% Similarity=0.395 Sum_probs=43.6
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCc
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 114 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai 114 (404)
.+...++++.+++.|++|+++.++ ++.+|+||++.. +|+..++.+ .+++-|||+.|.+
T Consensus 235 ~Le~~GV~f~~~t~VtdL~~~~d~-~~~~VtgI~~~~-~~~~~~I~l--~~~DlVivTnGs~ 292 (576)
T PRK13977 235 YLEDHGVDFQYGTKVTDIDFDITG-GKKTATAIHLTR-NGKEETIDL--TEDDLVFVTNGSI 292 (576)
T ss_pred HHHhCCCEEEeCCEEEEEEEcCCC-CceEEEEEEEEe-CCceeEEEe--cCCCEEEEeCCcC
Confidence 445679999999999999996221 235899999975 454444443 4899999999974
No 20
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=94.66 E-value=0.077 Score=55.60 Aligned_cols=59 Identities=17% Similarity=0.312 Sum_probs=44.8
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCc-hHHHH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM 121 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~T-P~LLl 121 (404)
.+.+.+++|++++.|++|+.+++ +++||.+.. +|+.+++. ++|.||||+|.+.. +.+|.
T Consensus 230 ~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 230 SLRARGVRILTQTDVESLETDHG-----RVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEec-CCeEEEEE----ccceEEECCCCcccCHHHHH
Confidence 34456899999999999998643 799999864 56555554 67899999998876 44443
No 21
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=94.65 E-value=0.11 Score=54.59 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=43.2
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHH
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 120 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LL 120 (404)
+.+.+++|++++.|++|+.+++ +++||.+.+ ++..++++ ++|.||||+|.+..-.-+
T Consensus 227 a~~~Gv~i~~~t~v~~l~~~~g-----~v~GV~~~~-~~~~~~i~----a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 227 AEDLGVRIWESAPARELLREDG-----RVAGAVVET-PGGLQEIR----ARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHhCCCEEEcCCEEEEEEEeCC-----EEEEEEEEE-CCcEEEEE----eCCEEEEcCCCcccCHHH
Confidence 3456899999999999998743 799999875 34444553 559999999998764433
No 22
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=94.62 E-value=0.089 Score=53.05 Aligned_cols=59 Identities=19% Similarity=0.360 Sum_probs=44.0
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCc-hHHH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLL 120 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~T-P~LL 120 (404)
.+.+.+++|+.++.|++|+.++++ +++||++.+.+++.+.+ ++|.||||+|.+.. |.++
T Consensus 139 ~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~~-----~a~~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 139 KAKKEGIDTRLNSKVEDLIQDDQG----TVVGVVVKGKGKGIYIK-----AAKAVVLATGGFGSNKEMI 198 (439)
T ss_pred HHHHcCCEEEeCCEeeEeEECCCC----cEEEEEEEeCCCeEEEE-----ecceEEEecCCCCCCHHHH
Confidence 334568999999999999997543 69999987644543333 57999999998765 4444
No 23
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.42 E-value=0.11 Score=54.24 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=42.8
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCc
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
..+.+++|+.++.+++|+.++++ +++||.+.+ .+|+.+.+ .+|-||||+|.+..
T Consensus 136 ~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 190 (570)
T PRK05675 136 NLKNGTTFLNEWYAVDLVKNQDG----AVVGVIAICIETGETVYI-----KSKATVLATGGAGR 190 (570)
T ss_pred HhccCCEEEECcEEEEEEEcCCC----eEEEEEEEEcCCCcEEEE-----ecCeEEECCCCccc
Confidence 34579999999999999986443 899999865 35766665 47899999998764
No 24
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=94.40 E-value=0.11 Score=54.65 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=41.0
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCc
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
..|++|+.++.|++|+.++++ +++||.+.+. +|+.+.+ .+|-||||+|.++.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~g----rV~GV~~~~~~~g~~~~i-----~AkaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDGN----RARGIIARNLVTGEIETH-----SADAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCCC----EEEEEEEEECCCCcEEEE-----EcCEEEECCCCCcC
Confidence 468999999999999987543 7999998763 4554555 46899999998753
No 25
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.34 E-value=0.11 Score=54.06 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=43.4
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCc
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
...+.+++|++++.|++|+.++++ +++||.+.+ .+|+.+.+ .+|-||||+|.+..
T Consensus 143 ~~~~~gv~i~~~t~v~~Li~~~~~----~v~Gv~~~~~~~g~~~~i-----~AkaVIlATGG~~~ 198 (543)
T PRK06263 143 YLIKERIKILEEVMAIKLIVDENR----EVIGAIFLDLRNGEIFPI-----YAKATILATGGAGQ 198 (543)
T ss_pred HHhcCCCEEEeCeEeeeeEEeCCc----EEEEEEEEECCCCcEEEE-----EcCcEEECCCCCCC
Confidence 344579999999999999987642 699998876 46665565 36899999998874
No 26
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.19 E-value=0.12 Score=54.36 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=42.6
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCc
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
..+.+++|++++.|++|+.++++ +++||.+.+ .+|+.+.+ .+|.||||+|.++.
T Consensus 159 ~~~~gi~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 213 (598)
T PRK09078 159 SLKHNAEFFIEYFALDLIMDDGG----VCRGVVAWNLDDGTLHRF-----RAHMVVLATGGYGR 213 (598)
T ss_pred HhhcCCEEEEeEEEEEEEEcCCC----EEEEEEEEECCCCcEEEE-----EcCEEEECCCCCcc
Confidence 34578999999999999987543 799999865 35665665 46899999998774
No 27
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.91 E-value=0.14 Score=54.20 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=41.9
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCc
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
..+.|++|+.++.|++|+.+++ +++||.+.+. +|+.+.+ .+|.||||+|.++.
T Consensus 180 ~~~~gV~i~~~t~v~~Li~d~g-----~V~GV~~~~~~~g~~~~i-----~AkaVVLATGG~g~ 233 (640)
T PRK07573 180 IAAGTVKMYTRTEMLDLVVVDG-----RARGIVARNLVTGEIERH-----TADAVVLATGGYGN 233 (640)
T ss_pred HHhcCCEEEeceEEEEEEEeCC-----EEEEEEEEECCCCcEEEE-----ECCEEEECCCCccc
Confidence 3457899999999999998743 7999998763 4655555 47899999998664
No 28
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=93.85 E-value=0.16 Score=53.14 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=41.8
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCc
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
..+.+++|+.++.|++|+.++ + +++||...+ .+|+...+ .+|-||||+|.+..
T Consensus 129 ~~~~gi~i~~~~~~~~Li~~~-g----~v~Ga~~~~~~~g~~~~i-----~AkaVILATGG~~~ 182 (565)
T TIGR01816 129 NLKADTSFFNEYFALDLLMED-G----ECRGVIAYCLETGEIHRF-----RAKAVVLATGGYGR 182 (565)
T ss_pred HHhCCCEEEeccEEEEEEeeC-C----EEEEEEEEEcCCCcEEEE-----EeCeEEECCCCccc
Confidence 346789999999999999864 3 799999865 35665565 46899999998764
No 29
>PRK06175 L-aspartate oxidase; Provisional
Probab=93.77 E-value=0.18 Score=50.92 Aligned_cols=51 Identities=12% Similarity=0.282 Sum_probs=39.6
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCc
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
.+.|++|++++.|++|+.+++ +++||.... +++.+++. +|.||||+|.+..
T Consensus 140 ~~~gV~i~~~t~v~~Li~~~~-----~v~Gv~~~~-~g~~~~i~-----Ak~VILAtGG~~~ 190 (433)
T PRK06175 140 KRKNITIIENCYLVDIIENDN-----TCIGAICLK-DNKQINIY-----SKVTILATGGIGG 190 (433)
T ss_pred hcCCCEEEECcEeeeeEecCC-----EEEEEEEEE-CCcEEEEE-----cCeEEEccCcccc
Confidence 457999999999999987643 799988764 45544553 5899999998664
No 30
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.54 E-value=0.21 Score=52.43 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=42.3
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCc
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
+.+.+++|++++.|++|+.++++ +++||.+.+ .+|+.+.+ .+|-||||+|.+..
T Consensus 153 ~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 207 (588)
T PRK08958 153 NLKNHTTIFSEWYALDLVKNQDG----AVVGCTAICIETGEVVYF-----KARATVLATGGAGR 207 (588)
T ss_pred hhhcCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCcEEEE-----EcCeEEECCCCccc
Confidence 34578999999999999986443 899999865 35666665 36899999998764
No 31
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=93.54 E-value=0.2 Score=52.99 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=41.9
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCc
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
+.+.+++|+.++.|++|+.++++ +++||.+.+ .+|+.+.+ .+|-||||+|.+..
T Consensus 176 a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 230 (617)
T PTZ00139 176 SLKYDCNFFIEYFALDLIMDEDG----ECRGVIAMSMEDGSIHRF-----RAHYTVIATGGYGR 230 (617)
T ss_pred HHhCCCEEEeceEEEEEEECCCC----EEEEEEEEECCCCeEEEE-----ECCcEEEeCCCCcc
Confidence 34578999999999999985333 799999865 35665555 47899999998764
No 32
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=93.14 E-value=0.55 Score=47.02 Aligned_cols=85 Identities=29% Similarity=0.426 Sum_probs=59.1
Q ss_pred hhh-hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCchHHHHhhcCCC
Q 015588 50 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN 127 (404)
Q Consensus 50 ~l~-~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG~~g 127 (404)
++. ...++|++|..++.|+.|...+++ -.-|.+.+ ..|+..+++ +|-|++.||+ ++=.||+.||
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg-----~W~v~~~~~~~~~~~~v~-----a~FVfvGAGG-~aL~LLqksg--- 252 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDG-----RWEVKVKDLKTGEKREVR-----AKFVFVGAGG-GALPLLQKSG--- 252 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCC-----CEEEEEEecCCCCeEEEE-----CCEEEECCch-HhHHHHHHcC---
Confidence 444 335679999999999999887653 34455444 246666664 7999999998 7889999998
Q ss_pred ceeeecCcccCCcCcCCCCceeeeeCCC
Q 015588 128 ITVVLDQPLVGQGMSDNPMNAIFVPSPV 155 (404)
Q Consensus 128 I~~~~d~p~VG~nl~DH~~~~~~~~~~~ 155 (404)
|| =|+++-.=|....++..+.
T Consensus 253 i~-------e~~gyggfPVsG~fl~~~n 273 (488)
T PF06039_consen 253 IP-------EGKGYGGFPVSGQFLRCKN 273 (488)
T ss_pred Ch-------hhcccCCCcccceEEecCC
Confidence 43 2555555566555555554
No 33
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=93.14 E-value=0.31 Score=51.00 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=41.4
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCch
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 117 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP 117 (404)
..+.+++|++++.|++|+.+++ +++||.+.+.++ ...+. ++|.||||+|.+..-
T Consensus 224 ~~~~Gv~i~~~~~v~~l~~~~g-----~V~GV~~~~~~~-~~~i~----a~k~VVlAtGg~~~n 277 (574)
T PRK12842 224 ALDLGIPILTGTPARELLTEGG-----RVVGARVIDAGG-ERRIT----ARRGVVLACGGFSHD 277 (574)
T ss_pred HHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEEcCCc-eEEEE----eCCEEEEcCCCccch
Confidence 3467899999999999998753 799999876333 34443 667899999988743
No 34
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=93.11 E-value=0.22 Score=52.68 Aligned_cols=53 Identities=17% Similarity=0.335 Sum_probs=42.1
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCc
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
.+.+++|+.++.|++|+.++++ +++||.+.+. +|+.+.+ .+|-||||+|.++-
T Consensus 198 ~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~g~ 251 (635)
T PLN00128 198 MKHNTQFFVEYFALDLIMDSDG----ACQGVIALNMEDGTLHRF-----RAHSTILATGGYGR 251 (635)
T ss_pred HhCCCEEEEeeEEEEEEEcCCC----EEEEEEEEEcCCCeEEEE-----EcCeEEECCCCCcc
Confidence 4568999999999999987443 7999998663 5665665 47899999998764
No 35
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=92.93 E-value=0.27 Score=55.89 Aligned_cols=57 Identities=16% Similarity=0.305 Sum_probs=43.3
Q ss_pred CCCeEEecCcEEEEEEEecCC----CCCCeEEEEEEEeC---CCceeEEEeecCCCceEEEecCCcCch
Q 015588 56 PSGLTLLLHASVHKVLFRIKG----KARPVAHGVVFRDA---TGAKHRAYLKNGPKNEIIVSAGALGSP 117 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~----~~~~~a~GV~~~~~---~g~~~~v~~~~~a~keVILsAGai~TP 117 (404)
+.+++|++++.|++|+.++++ +...+++||++.+. +|+.+.+ .+|-||||+|.++.-
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i-----~AkaVILATGGf~~N 622 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDL-----LADAVILATGGFSND 622 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEE-----EeceEEEecCCcccC
Confidence 368999999999999997421 01137999999864 5766665 368999999998863
No 36
>PRK08275 putative oxidoreductase; Provisional
Probab=92.78 E-value=0.26 Score=51.41 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=40.7
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcC
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
+.+.+++|+.++.|++|+.++++ +++||.+.+ .+|+.+.+ .+|.||||+|.+.
T Consensus 147 ~~~~gv~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~ 200 (554)
T PRK08275 147 LKRARVLITNRIMATRLLTDADG----RVAGALGFDCRTGEFLVI-----RAKAVILCCGAAG 200 (554)
T ss_pred HHHCCCEEEcceEEEEEEEcCCC----eEEEEEEEecCCCcEEEE-----ECCEEEECCCCcc
Confidence 34578999999999999987433 799998765 35655555 4689999999754
No 37
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=92.76 E-value=0.39 Score=50.02 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=40.3
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe--CC------------CceeEEEeecCCCceEEEecCCcC-chHHH
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD--AT------------GAKHRAYLKNGPKNEIIVSAGALG-SPQLL 120 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~--~~------------g~~~~v~~~~~a~keVILsAGai~-TP~LL 120 (404)
..+++|++++.|++|+.++ + +++||++.+ .+ +..+++ .+|-||||+|.++ ++.++
T Consensus 164 ~~gv~i~~~t~~~~Li~~~-g----~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i-----~AkaVILATGGf~~n~em~ 233 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVTD-G----AVTGVRGTVLEPSDAERGEASSREVVGEFEL-----RAQAVIVTSGGIGGNHELV 233 (549)
T ss_pred hCCceEEecCEeeEEEEeC-C----EEEEEEEEecccccccccccccccccceEEE-----ecCEEEEeCCCcccCHHHH
Confidence 4579999999999999874 3 799999742 11 123344 3589999999887 45555
Q ss_pred H
Q 015588 121 M 121 (404)
Q Consensus 121 l 121 (404)
.
T Consensus 234 ~ 234 (549)
T PRK12834 234 R 234 (549)
T ss_pred H
Confidence 4
No 38
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.72 E-value=0.32 Score=50.81 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=40.8
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcC
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
.+.+++|+.++.|++|+.+++ +++||.+.+. +|+.+.+ .+|-||||+|.++
T Consensus 147 ~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~ 198 (566)
T PRK06452 147 SGLNVDFYNEWFSLDLVTDNK-----KVVGIVAMQMKTLTPFFF-----KTKAVVLATGGMG 198 (566)
T ss_pred HhCCCEEEeCcEEEEEEEECC-----EEEEEEEEECCCCeEEEE-----EeCeEEECCCccc
Confidence 346899999999999998743 7999998764 3554455 4699999999887
No 39
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=92.72 E-value=0.34 Score=49.94 Aligned_cols=58 Identities=16% Similarity=0.296 Sum_probs=42.9
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCc-hHHHHh
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLML 122 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~T-P~LLl~ 122 (404)
...+++|++++.|++|+.+++ +++||.+...+++..++ .+|.||||+|.+.. |.++..
T Consensus 201 ~~~gv~i~~~t~v~~l~~~~g-----~V~Gv~~~~~~g~~~~i-----~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 201 QERKIPLFVNADVTKITEKDG-----KVTGVKVKINGKETKTI-----SSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred HHcCCeEEeCCeeEEEEecCC-----EEEEEEEEeCCCeEEEE-----ecCeEEEeCCCcccCHHHHHH
Confidence 456899999999999986542 79999987544454555 46899999997765 445443
No 40
>PLN02815 L-aspartate oxidase
Probab=92.34 E-value=0.27 Score=51.62 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=41.2
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcC
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
..+|++|+.++.|++|+.++++ +..+++||.+.+. +|+.+.+ .+|-||||+|.++
T Consensus 167 ~~~~i~i~~~~~~~~Li~~~~g-~~~~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~g 222 (594)
T PLN02815 167 NDPNITFFEHHFAIDLLTSQDG-GSIVCHGADVLDTRTGEVVRF-----ISKVTLLASGGAG 222 (594)
T ss_pred hcCCCEEEeceEhheeeeecCC-CccEEEEEEEEEcCCCeEEEE-----EeceEEEcCCcce
Confidence 4569999999999999986432 1124999998653 5655555 4699999999875
No 41
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.32 E-value=0.36 Score=50.74 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=39.7
Q ss_pred CCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCc
Q 015588 57 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 57 ~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
.+++|+.++.|++++.++++ +++||.+.+. +|+.+.+ .+|-||||+|.+..
T Consensus 150 ~~i~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLDDEG----VCRGIVAQDLFTMEIESF-----PADAVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEECCCC----EEEEEEEEECCCCcEEEE-----ECCEEEECCCCCcC
Confidence 35899999999999986543 7999999764 3444444 47899999998764
No 42
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=92.30 E-value=0.21 Score=50.16 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=42.4
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcC
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
..++||++|+.++.+.+|+.+++. .+.||.+.+.+++..++ .++.||||+|.++
T Consensus 143 v~~~p~I~v~e~~~a~~li~~~~~----~~~Gv~~~~~~~~~~~~-----~a~~vVLATGG~g 196 (518)
T COG0029 143 VRNRPNITVLEGAEALDLIIEDGI----GVAGVLVLNRNGELGTF-----RAKAVVLATGGLG 196 (518)
T ss_pred HhcCCCcEEEecchhhhhhhcCCc----eEeEEEEecCCCeEEEE-----ecCeEEEecCCCc
Confidence 446799999999999999998763 46699997643434555 4799999999764
No 43
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.25 E-value=0.37 Score=50.98 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=38.4
Q ss_pred CeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCc
Q 015588 58 GLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 58 nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
|++|+.++.|++|+.+++ +++||.+.+ .+|+.+.+ .+|.||||+|.++.
T Consensus 165 ~v~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i-----~Ak~VVlATGG~~~ 214 (626)
T PRK07803 165 RIKVFAECTITELLKDGG-----RIAGAFGYWRESGRFVLF-----EAPAVVLATGGIGK 214 (626)
T ss_pred ceEEEeCCEEEEEEEECC-----EEEEEEEEECCCCeEEEE-----EcCeEEECCCcccC
Confidence 499999999999998643 799998765 34655555 47899999998664
No 44
>PRK09077 L-aspartate oxidase; Provisional
Probab=92.13 E-value=0.36 Score=50.09 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=42.0
Q ss_pred CCCCeEEecCcEEEEEEEecCC-CCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCc
Q 015588 55 NPSGLTLLLHASVHKVLFRIKG-KARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~-~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
..+|++|+.++.|++++.++.. ....+++||.+.+. +|+.+.+ .+|-||||+|.+..
T Consensus 150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i-----~Ak~VVlATGG~~~ 208 (536)
T PRK09077 150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETI-----RAKFVVLATGGASK 208 (536)
T ss_pred hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEE-----ecCeEEECCCCCCC
Confidence 4579999999999999986410 00137999998763 4655555 47999999998763
No 45
>PRK07395 L-aspartate oxidase; Provisional
Probab=91.88 E-value=0.25 Score=51.49 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=40.6
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcC
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
+++|++|++++.|++|+.++.+ .+++||.+.+ +|+.+.+ .+|-||||+|.++
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~~~---g~v~Gv~~~~-~g~~~~i-----~AkaVILATGG~~ 197 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEPET---GRCQGISLLY-QGQITWL-----RAGAVILATGGGG 197 (553)
T ss_pred hcCCcEEEECcChhhheecCCC---CEEEEEEEEE-CCeEEEE-----EcCEEEEcCCCCc
Confidence 4569999999999999987421 2799998865 5655555 4689999999865
No 46
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=91.62 E-value=0.43 Score=50.81 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=41.7
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcC
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
+.+.+++|+.++.|++|+.+++ +++||.+.+ .+|+.+.+ .+|-||||+|.+.
T Consensus 168 ~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~G~~~~i-----~AkaVVLATGG~g 220 (657)
T PRK08626 168 AIKLGVPVHDRKEAIALIHDGK-----RCYGAVVRCLITGELRAY-----VAKATLIATGGYG 220 (657)
T ss_pred HHhCCCEEEeeEEEEEEEEECC-----EEEEEEEEEcCCCcEEEE-----EcCeEEECCCccc
Confidence 3457899999999999998753 799999976 35765555 4689999999766
No 47
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.58 E-value=0.51 Score=49.61 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=41.1
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCc
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
...+++++.++.|++|+.++++ +++||.+.+. +|+.+.+ .+|-||||+|.+..
T Consensus 159 ~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 212 (591)
T PRK07057 159 VAAKTQFFVEWMALDLIRDADG----DVLGVTALEMETGDVYIL-----EAKTTLFATGGAGR 212 (591)
T ss_pred HhcCCEEEeCcEEEEEEEcCCC----eEEEEEEEEcCCCeEEEE-----ECCeEEECCCCccc
Confidence 4568999999999999987543 7999998653 4554454 47899999997663
No 48
>PRK08071 L-aspartate oxidase; Provisional
Probab=91.19 E-value=0.41 Score=49.39 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=40.4
Q ss_pred CCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCc
Q 015588 57 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 57 ~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
.+++|+.++.|++|+.+++ ++.||...+.+|+.+.+ .+|.||||+|.+..
T Consensus 142 ~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~g~~~~i-----~Ak~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIENG-----RCIGVLTKDSEGKLKRY-----YADYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeecCC-----EEEEEEEEECCCcEEEE-----EcCeEEEecCCCcc
Confidence 6899999999999987643 79999987655665555 46999999998774
No 49
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=91.17 E-value=0.51 Score=49.32 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=40.6
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCc
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
.+.+++|+.++.|++|+.+++ +++||.+.+ .+|+...+ .+|-||||+|.+..
T Consensus 140 ~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i-----~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 140 LKLGVSFFNEYFALDLIHDDG-----RVRGVVAYDLKTGEIVFF-----RAKAVVLATGGYGR 192 (566)
T ss_pred HHcCCEEEeccEEEEEEEeCC-----EEEEEEEEECCCCcEEEE-----ECCeEEECCCcccC
Confidence 345899999999999998743 799999865 34654555 46999999998763
No 50
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.96 E-value=0.68 Score=48.52 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=41.3
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCc
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
.+.+.|++|++++.|++|+.+++ +++||...+ .+|+.+++ .+|-||||+|.+..
T Consensus 144 ~~~~~gi~i~~~t~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVVlATGG~~~ 198 (575)
T PRK05945 144 NLRRYGVTIYDEWYVMRLILEDN-----QAKGVVMYHIADGRLEVV-----RAKAVMFATGGYGR 198 (575)
T ss_pred HHhhCCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCeEEEE-----ECCEEEECCCCCcC
Confidence 34457899999999999998643 799998654 34654555 46899999998764
No 51
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=90.83 E-value=0.28 Score=47.25 Aligned_cols=69 Identities=28% Similarity=0.326 Sum_probs=47.0
Q ss_pred CCCceecHHHh---h-hhcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcC
Q 015588 40 QNGQRHTAADL---L-EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 40 ~~g~R~s~~~~---l-~~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
..+...++..+ + ..+.+.+.+|++++.|++|..+++ +++||+.. +|+ + .++.||+|+|+ .
T Consensus 139 ~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-----~v~gv~~~--~g~---i-----~ad~vV~a~G~-~ 202 (358)
T PF01266_consen 139 PEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGG-----RVTGVRTS--DGE---I-----RADRVVLAAGA-W 202 (358)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETT-----EEEEEEET--TEE---E-----EECEEEE--GG-G
T ss_pred cccccccccchhhhhHHHHHHhhhhccccccccchhhccc-----cccccccc--ccc---c-----ccceeEecccc-c
Confidence 44444555432 2 233445899999999999999875 58889864 342 4 36999999997 7
Q ss_pred chHHHHhhc
Q 015588 116 SPQLLMLSG 124 (404)
Q Consensus 116 TP~LLl~SG 124 (404)
|++||..+|
T Consensus 203 s~~l~~~~~ 211 (358)
T PF01266_consen 203 SPQLLPLLG 211 (358)
T ss_dssp HHHHHHTTT
T ss_pred ceeeeeccc
Confidence 899888776
No 52
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=90.83 E-value=0.68 Score=48.55 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=40.6
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcC
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
..+|++++.++.|++|+.+++ +++||...+ .+|+.+.+ .+|-||||.|.+.
T Consensus 144 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~ 195 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVDDG-----RVCGLVAIEMAEGRLVTI-----LADAVVLATGGAG 195 (580)
T ss_pred hcCCCEEEeCeEEEEEEeeCC-----EEEEEEEEEcCCCcEEEE-----ecCEEEEcCCCCc
Confidence 346899999999999998743 799998765 35665555 4689999999765
No 53
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.64 E-value=0.62 Score=48.89 Aligned_cols=56 Identities=27% Similarity=0.377 Sum_probs=40.8
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcC
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
+...+++|+.++.|++|+.+++. +..+++||...+ .+|+.+.+ .+|-||||+|.+.
T Consensus 150 ~~~~gv~i~~~~~v~~Li~~~~~-~~g~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~ 206 (583)
T PRK08205 150 CVKHGVEFFNEFYVLDLLLTETP-SGPVAAGVVAYELATGEIHVF-----HAKAVVFATGGSG 206 (583)
T ss_pred HHhcCCEEEeCCEEEEEEecCCc-cCCcEEEEEEEEcCCCeEEEE-----EeCeEEECCCCCc
Confidence 34568999999999999987520 002799998854 34554555 3689999999765
No 54
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=90.60 E-value=0.72 Score=48.39 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=40.6
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCc
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
..+|+++++++.|++|+.+++ +++||.+.+ .+|+.+.+ .+|-||||.|.+..
T Consensus 145 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQI-----RANAVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEeCC-----EEEEEEEEEcCCCcEEEE-----ECCEEEECCCCCcC
Confidence 346899999999999998753 799998764 35655555 47999999998663
No 55
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=90.08 E-value=0.9 Score=46.91 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=47.0
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
.+.+.+.+|++++.|++|..+++ +++||++.+. +|+..++ .++.||+|||+ .+.+|+...|
T Consensus 137 ~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~~~~~g~~~~i-----~a~~VVnAaG~-wa~~l~~~~g 198 (516)
T TIGR03377 137 DAQEHGARIFTYTKVTGLIREGG-----RVTGVKVEDHKTGEEERI-----EAQVVINAAGI-WAGRIAEYAG 198 (516)
T ss_pred HHHHcCCEEEcCcEEEEEEEECC-----EEEEEEEEEcCCCcEEEE-----EcCEEEECCCc-chHHHHHhcC
Confidence 34456899999999999987654 6999998753 4555566 37999999997 5788887666
No 56
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=89.64 E-value=0.93 Score=48.02 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=47.0
Q ss_pred hcCCCCeEEecCcEEEEEEEec-CCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 53 YANPSGLTLLLHASVHKVLFRI-KGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~-~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
.+.+.+.+|+.++.|++|..++ ++ +++||++.+. +|+.+++ .++.||+|||+ .+.+|+...|
T Consensus 241 ~A~~~Ga~i~~~~~V~~l~~~~~~g----~v~gV~v~d~~tg~~~~i-----~a~~VVnAaGa-ws~~l~~~~g 304 (627)
T PLN02464 241 TAALAGAAVLNYAEVVSLIKDESTG----RIVGARVRDNLTGKEFDV-----YAKVVVNAAGP-FCDEVRKMAD 304 (627)
T ss_pred HHHhCCcEEEeccEEEEEEEecCCC----cEEEEEEEECCCCcEEEE-----EeCEEEECCCH-hHHHHHHhcc
Confidence 3455689999999999998874 22 6999998763 4555556 47999999998 5777877665
No 57
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=88.62 E-value=1.2 Score=46.28 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=53.3
Q ss_pred EEEEECCCCceecHHHh----hhhcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEE
Q 015588 34 GGTIFDQNGQRHTAADL----LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEII 108 (404)
Q Consensus 34 g~~~~~~~g~R~s~~~~----l~~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVI 108 (404)
|..+++ +| ..++..+ +..+.+.+.++++++.|+.|..+++ +++||++.+. +|+..++ .++.||
T Consensus 137 ga~~~~-dg-~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~d~~~g~~~~i-----~A~~VV 204 (546)
T PRK11101 137 GAVKVP-DG-TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGD-----TVCGVRVRDHLTGETQEI-----HAPVVV 204 (546)
T ss_pred EEEEec-Cc-EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCC-----eEEEEEEEEcCCCcEEEE-----ECCEEE
Confidence 444443 55 3455432 2233456899999999999987653 6999998763 3544556 378999
Q ss_pred EecCCcCchHHHHhhc
Q 015588 109 VSAGALGSPQLLMLSG 124 (404)
Q Consensus 109 LsAGai~TP~LLl~SG 124 (404)
+|||+ .+.+|+...|
T Consensus 205 nAaG~-wa~~l~~~~g 219 (546)
T PRK11101 205 NAAGI-WGQHIAEYAD 219 (546)
T ss_pred ECCCh-hHHHHHHhcC
Confidence 99997 5788876655
No 58
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=88.34 E-value=1.2 Score=46.87 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=39.2
Q ss_pred CCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcC
Q 015588 57 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 57 ~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
.+.+|+.++.|++|+.++++ ..+++||.+.+ .+|+.+.+ .+|-||||+|.+.
T Consensus 139 ~~~~i~~~~~v~~Ll~d~~~--~GrV~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~ 191 (614)
T TIGR02061 139 ALGDIFERIFIVKLLLDKNT--PNRIAGAVGFNVRANEVHVF-----KAKTVIVAAGGAV 191 (614)
T ss_pred CCCeEEcccEEEEEEecCCC--CCeEEEEEEEEeCCCcEEEE-----ECCEEEECCCccc
Confidence 35799999999999986520 02799999865 35665555 4789999999864
No 59
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=88.30 E-value=1.3 Score=46.82 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=39.0
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcC
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
+.+|++|+.++.|++|+.+++ +++||.+.+ .+|+.+.+ .+|.||||+|.+.
T Consensus 144 ~~ggV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~ 195 (608)
T PRK06854 144 KALGDNVLNRVFITDLLVDDN-----RIAGAVGFSVRENKFYVF-----KAKAVIVATGGAA 195 (608)
T ss_pred hcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEEccCCcEEEE-----ECCEEEECCCchh
Confidence 345799999999999998753 799998654 34554455 4689999999765
No 60
>PRK07512 L-aspartate oxidase; Provisional
Probab=88.29 E-value=0.75 Score=47.49 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=38.6
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcC
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
.+++++|+.++.|++|+.+++ +++||.+.+ .+..+++ .+|.||||+|.+.
T Consensus 148 ~~~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~~~~~~i-----~Ak~VVLATGG~~ 197 (513)
T PRK07512 148 ATPSITVLEGAEARRLLVDDG-----AVAGVLAAT-AGGPVVL-----PARAVVLATGGIG 197 (513)
T ss_pred hCCCCEEEECcChhheeecCC-----EEEEEEEEe-CCeEEEE-----ECCEEEEcCCCCc
Confidence 346899999999999987642 799999875 3443444 3689999999875
No 61
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=88.23 E-value=1.1 Score=45.87 Aligned_cols=50 Identities=10% Similarity=0.230 Sum_probs=39.5
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCc
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~T 116 (404)
.+|++|+.++.|++|+.+++ +++||.+.+. +...++ .+|.||||+|.+..
T Consensus 141 ~~gi~i~~~~~v~~l~~~~g-----~v~Gv~~~~~-~~~~~i-----~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 141 HPNIRIIEGENALDLLIETG-----RVVGVWVWNR-ETVETC-----HADAVVLATGGAGK 190 (488)
T ss_pred cCCcEEEECeEeeeeeccCC-----EEEEEEEEEC-CcEEEE-----EcCEEEECCCcccC
Confidence 47999999999999988643 6999988763 444444 47999999999764
No 62
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=88.08 E-value=1.2 Score=49.27 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=39.7
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcC
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
+.++.+.+++.+.+++.+++ +++||.+.+ .+|+.+.+ .+|-||||+|.++
T Consensus 155 ~~~i~~~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~g 205 (897)
T PRK13800 155 RERIRIENRLMPVRVLTEGG-----RAVGAAALNTRTGEFVTV-----GAKAVILATGPCG 205 (897)
T ss_pred cCCcEEEeceeeEEEEeeCC-----EEEEEEEEecCCCcEEEE-----ECCEEEECCCccc
Confidence 35899999999999998643 799999865 35766665 4799999999765
No 63
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.96 E-value=1.3 Score=46.49 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=39.9
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcC
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
...+++++.++.|++|+.+++ +++||.+.+. +|+.+.+ .+|-||||+|.+.
T Consensus 149 ~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~ 200 (577)
T PRK06069 149 RFDNIHFYDEHFVTSLIVENG-----VFKGVTAIDLKRGEFKVF-----QAKAGIIATGGAG 200 (577)
T ss_pred hcCCCEEEECCEEEEEEEECC-----EEEEEEEEEcCCCeEEEE-----ECCcEEEcCchhc
Confidence 346899999999999998753 7999988653 4554455 4799999999875
No 64
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=86.67 E-value=2.1 Score=42.78 Aligned_cols=71 Identities=17% Similarity=0.108 Sum_probs=49.3
Q ss_pred CCceecHHHhhhhcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHH
Q 015588 41 NGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 120 (404)
Q Consensus 41 ~g~R~s~~~~l~~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LL 120 (404)
-|.|-..+ +...+.+.+.+++.++.|+++.++++ ++++|... ++...++ .++.||||+|++-|..|+
T Consensus 261 ~G~RL~~a-L~~~~~~~Gg~il~g~~V~~i~~~~~-----~v~~V~t~--~g~~~~l-----~AD~vVLAaGaw~S~gL~ 327 (419)
T TIGR03378 261 LGIRLEEA-LKHRFEQLGGVMLPGDRVLRAEFEGN-----RVTRIHTR--NHRDIPL-----RADHFVLASGSFFSNGLV 327 (419)
T ss_pred cHHHHHHH-HHHHHHHCCCEEEECcEEEEEEeeCC-----eEEEEEec--CCccceE-----ECCEEEEccCCCcCHHHH
Confidence 36665543 22233345788999999999998765 58887653 3322334 368899999999899997
Q ss_pred Hhhc
Q 015588 121 MLSG 124 (404)
Q Consensus 121 l~SG 124 (404)
...+
T Consensus 328 a~l~ 331 (419)
T TIGR03378 328 AEFD 331 (419)
T ss_pred hhcC
Confidence 7665
No 65
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=86.41 E-value=0.9 Score=40.13 Aligned_cols=60 Identities=20% Similarity=0.337 Sum_probs=34.8
Q ss_pred hhh-hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 50 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 50 ~l~-~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
|+. .+++-++.|.++++|++|..+++ + --|++ .++ +++ .++.||||.|....|+++..-|
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~~-----~-w~v~~--~~~--~~~-----~a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDGD-----G-WTVTT--RDG--RTI-----RADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEETT-----T-EEEEE--TTS---EE-----EEEEEEE---SSCSB---S-TT
T ss_pred HHHHHHhhcCcccccCCEEEEEEEecc-----E-EEEEE--Eec--cee-----eeeeEEEeeeccCCCCcccccc
Confidence 554 44556888999999999999864 2 23444 244 334 2689999999999999887544
No 66
>PRK07804 L-aspartate oxidase; Provisional
Probab=86.09 E-value=1.8 Score=44.98 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=38.8
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC----CCceeEEEeecCCCceEEEecCCcC
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA----TGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~----~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
.+.+++|+.++.|++|+.++++ +++||.+.+. .+...++ .+|-||||+|.+.
T Consensus 155 ~~~gV~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~~~~~g~~~i-----~Ak~VIlATGG~~ 210 (541)
T PRK07804 155 RADPLDIREHALALDLLTDGTG----AVAGVTLHVLGEGSPDGVGAV-----HAPAVVLATGGLG 210 (541)
T ss_pred HhCCCEEEECeEeeeeEEcCCC----eEEEEEEEeccCCCCCcEEEE-----EcCeEEECCCCCC
Confidence 3456999999999999987543 7999988631 2223344 4799999999866
No 67
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=85.25 E-value=2.3 Score=42.83 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=39.5
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~ 118 (404)
.+.+.+.+|++++.|++|+.+..+ .+++||.... ++ .++ .+|.||||+|.+..-+
T Consensus 132 ~a~~~Gv~i~~~~~v~~l~~~~~~---g~v~gv~~~~-~~--~~i-----~ak~VIlAtGG~~~n~ 186 (432)
T TIGR02485 132 SAERLGVEIRYGIAVDRIPPEAFD---GAHDGPLTTV-GT--HRI-----TTQALVLAAGGLGANR 186 (432)
T ss_pred HHHHcCCEEEeCCEEEEEEecCCC---CeEEEEEEcC-Cc--EEE-----EcCEEEEcCCCcccCH
Confidence 344568999999999999886311 2799988632 22 344 3689999999887644
No 68
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=84.67 E-value=3.7 Score=42.15 Aligned_cols=51 Identities=16% Similarity=0.068 Sum_probs=38.2
Q ss_pred CeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 58 GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 58 nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
+++|++++.|+.|..+++ ....|.. .+| ++ .++.||+|||+ .|.+|+..+|
T Consensus 231 ~v~i~~~t~V~~I~~~~~-----~~~~V~T--~~G---~i-----~A~~VVvaAG~-~S~~La~~~G 281 (497)
T PTZ00383 231 KISINLNTEVLNIERSND-----SLYKIHT--NRG---EI-----RARFVVVSACG-YSLLFAQKMG 281 (497)
T ss_pred CEEEEeCCEEEEEEecCC-----CeEEEEE--CCC---EE-----EeCEEEECcCh-hHHHHHHHhC
Confidence 489999999999987643 2445543 234 34 36899999998 6889999888
No 69
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=83.55 E-value=6 Score=40.50 Aligned_cols=62 Identities=27% Similarity=0.387 Sum_probs=41.6
Q ss_pred hhcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 52 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 52 ~~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
..+.+.+.+|+.++.|++|..++++ ...|...+ ..|+..++ .++.||+|||+ .+.+|+...|
T Consensus 186 ~~a~~~Gv~i~~~t~V~~i~~~~~~-----~v~v~~~~~~~g~~~~i-----~A~~VV~AAG~-~s~~La~~~G 248 (483)
T TIGR01320 186 GYLVQNGTTIRFGHEVRNLKRQSDG-----SWTVTVKNTRTGGKRTL-----NTRFVFVGAGG-GALPLLQKSG 248 (483)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcCCC-----eEEEEEeeccCCceEEE-----ECCEEEECCCc-chHHHHHHcC
Confidence 3334458999999999999875432 12233332 23443445 37899999998 6788888777
No 70
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=83.30 E-value=2.1 Score=42.41 Aligned_cols=49 Identities=16% Similarity=0.371 Sum_probs=35.8
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCch
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 117 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP 117 (404)
...+|++|+ +..|+.|+.+++ ++.||... +|+. + .++-||||+|++...
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e~~-----~v~GV~~~--~g~~--~-----~a~~vVlaTGtfl~G 154 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVENG-----KVKGVVTK--DGEE--I-----EADAVVLATGTFLNG 154 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEECTT-----EEEEEEET--TSEE--E-----EECEEEE-TTTGBTS
T ss_pred hcCCCeEEE-EcccceEEecCC-----eEEEEEeC--CCCE--E-----ecCEEEEecccccCc
Confidence 356999997 679999999874 79999874 4653 3 368999999994433
No 71
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=81.92 E-value=5.8 Score=39.77 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=43.3
Q ss_pred hhhhcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 50 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 50 ~l~~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
+...+...|.+|..++.|++|..++++ .+-+.. .+|+.. + .+|-||.|||. .+-+|++++|
T Consensus 159 l~e~a~~~g~~i~ln~eV~~i~~~~dg-----~~~~~~--~~g~~~-~-----~ak~Vin~AGl-~Ad~la~~~g 219 (429)
T COG0579 159 LAEEAQANGVELRLNTEVTGIEKQSDG-----VFVLNT--SNGEET-L-----EAKFVINAAGL-YADPLAQMAG 219 (429)
T ss_pred HHHHHHHcCCEEEecCeeeEEEEeCCc-----eEEEEe--cCCcEE-E-----EeeEEEECCch-hHHHHHHHhC
Confidence 444333349999999999999887642 222222 356544 4 47999999996 8899999998
No 72
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=81.09 E-value=5.5 Score=39.86 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=33.2
Q ss_pred hhhhcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchH
Q 015588 50 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118 (404)
Q Consensus 50 ~l~~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~ 118 (404)
++..+.+.+++|.+++.|+.|..+++ .+.+|+.. +++ .+ .++.||||+|..--|+
T Consensus 115 L~~~l~~~gv~i~~~~~V~~i~~~~~-----~~f~v~~~--~~~--~~-----~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 115 LLEELKRLGVEIHFNTRVKSIEKKED-----GVFGVKTK--NGG--EY-----EADAVILATGGKSYPK 169 (409)
T ss_dssp HHHHHHHHT-EEE-S--EEEEEEETT-----EEEEEEET--TTE--EE-----EESEEEE----SSSGG
T ss_pred HHHHHHHcCCEEEeCCEeeeeeecCC-----ceeEeecc--Ccc--cc-----cCCEEEEecCCCCccc
Confidence 33344567999999999999988765 47778762 333 33 3699999999888787
No 73
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=80.99 E-value=2.9 Score=42.84 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=40.5
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl 121 (404)
...+.+.+|++++.|++|..+++ ++.||... +|+. + .++.||+++|...+=+.|+
T Consensus 238 ~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~--~g~~--~-----~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 238 GLEKHGGQIRYRARVTKIILENG-----KAVGVKLA--DGEK--I-----YAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHCCCEEEeCCeeeEEEecCC-----cEEEEEeC--CCCE--E-----EcCEEEECCChHHHHHHhC
Confidence 34456899999999999998753 68999874 3542 3 3688999999866655443
No 74
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=79.54 E-value=3.4 Score=42.46 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=46.9
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
..+-++++.+.|++++.+++ ++||++.|. +|+.++++ ++.||-|||. .+-+|+...+
T Consensus 176 ~~Ga~il~~~~v~~~~re~~------v~gV~~~D~~tg~~~~ir-----a~~VVNAaGp-W~d~i~~~~~ 233 (532)
T COG0578 176 EHGAEILTYTRVESLRREGG------VWGVEVEDRETGETYEIR-----ARAVVNAAGP-WVDEILEMAG 233 (532)
T ss_pred hcccchhhcceeeeeeecCC------EEEEEEEecCCCcEEEEE-----cCEEEECCCc-cHHHHHHhhc
Confidence 45789999999999998863 999999984 47778774 7999999997 5667777765
No 75
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=79.40 E-value=4 Score=41.83 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=40.2
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHH
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl 121 (404)
+.+.+.+|++++.|++|..+++ +++||+.. +|+. + .++.||+|++...+-..|+
T Consensus 229 ~~~~G~~i~~~~~V~~i~~~~~-----~~~~V~~~--~g~~--~-----~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 229 AEDLGGELRLNAEVIRIETEGG-----RATAVHLA--DGER--L-----DADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHCCCEEEECCeEEEEEeeCC-----EEEEEEEC--CCCE--E-----ECCEEEECCcHHHHHHHhc
Confidence 3345789999999999998754 68899874 4543 3 3688999998877776654
No 76
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=79.38 E-value=1.1 Score=46.46 Aligned_cols=70 Identities=37% Similarity=0.543 Sum_probs=52.3
Q ss_pred cCCCceeeEEEEECCCCceecHHHhhhhcCCCCeEEecCcEEEEEEEecCC---CCCCeEEEEEEEeCCCcee
Q 015588 26 DHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKG---KARPVAHGVVFRDATGAKH 95 (404)
Q Consensus 26 d~~~g~~~g~~~~~~~g~R~s~~~~l~~~~r~nl~v~~~a~V~rv~~~~~~---~~~~~a~GV~~~~~~g~~~ 95 (404)
+...|...|..+.+.+|.|.+...++....+.+..+.+...+.|.++.... -....++++.+.|..|+..
T Consensus 217 ~~~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a 289 (623)
T KOG1238|consen 217 FHRAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRA 289 (623)
T ss_pred hHHhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceE
Confidence 344566677777788999999888877667788999999999999987321 1234688999988666543
No 77
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=78.72 E-value=9.3 Score=37.72 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=36.6
Q ss_pred hhhhcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHH
Q 015588 50 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 119 (404)
Q Consensus 50 ~l~~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~L 119 (404)
++..+.+.+++|++++.|+.| +++ -.+|... .+. ..+ .++.||||+|..-.|++
T Consensus 92 L~~~l~~~gV~i~~~~~V~~i--~~~------~~~v~~~--~~~-~~~-----~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 92 WLKRLAEQGVQFHTRHRWIGW--QGG------TLRFETP--DGQ-STI-----EADAVVLALGGASWSQL 145 (376)
T ss_pred HHHHHHHCCCEEEeCCEEEEE--eCC------cEEEEEC--CCc-eEE-----ecCEEEEcCCCcccccc
Confidence 333556789999999999998 322 2345442 222 233 47999999999877765
No 78
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=78.06 E-value=9.6 Score=39.17 Aligned_cols=58 Identities=28% Similarity=0.374 Sum_probs=40.1
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
.++++|++++.|+.|..++++ + ..|...+ ..|+..++ .++.||+|||+ .+.+|+..+|
T Consensus 196 ~Ggv~i~~~teV~~I~~~~dg----~-~~v~~~~~~~G~~~~i-----~A~~VVvaAGg-~s~~L~~~~G 254 (494)
T PRK05257 196 QGNFELQLGHEVRDIKRNDDG----S-WTVTVKDLKTGEKRTV-----RAKFVFIGAGG-GALPLLQKSG 254 (494)
T ss_pred CCCeEEEeCCEEEEEEECCCC----C-EEEEEEEcCCCceEEE-----EcCEEEECCCc-chHHHHHHcC
Confidence 345999999999999875432 2 2344332 23543345 37899999998 6788888887
No 79
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=77.12 E-value=5.6 Score=39.93 Aligned_cols=55 Identities=13% Similarity=0.026 Sum_probs=39.6
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 119 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~L 119 (404)
...+.+.+|++++.|+++..+++ ++++|.. .+|+...+ .++.||||+|.+.+.-|
T Consensus 268 ~l~~~Gv~I~~g~~V~~v~~~~~-----~V~~v~~--~~g~~~~i-----~AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 268 AFERLGGRIMPGDEVLGAEFEGG-----RVTAVWT--RNHGDIPL-----RARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEe--eCCceEEE-----ECCEEEEeCCCcccCce
Confidence 34456899999999999987653 4766652 24555555 36899999998766555
No 80
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=77.03 E-value=6.2 Score=36.77 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=37.2
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC----CC---ceeEEEeecCCCceEEEecCC
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA----TG---AKHRAYLKNGPKNEIIVSAGA 113 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~----~g---~~~~v~~~~~a~keVILsAGa 113 (404)
+...+.+|+.++.|+.|..++++ +++||.+... .| ...++ .+|-||+|+|.
T Consensus 114 A~~~Gv~I~~~t~V~dl~~~~~g----~V~Gvv~~~~~v~~~g~~~~~~~i-----~Ak~VI~ATG~ 171 (257)
T PRK04176 114 AIDAGAKIFNGVSVEDVILREDP----RVAGVVINWTPVEMAGLHVDPLTI-----EAKAVVDATGH 171 (257)
T ss_pred HHHcCCEEEcCceeceeeEeCCC----cEEEEEEccccccccCCCCCcEEE-----EcCEEEEEeCC
Confidence 34568999999999999886542 6999987431 11 23455 47999999995
No 81
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=75.32 E-value=5.4 Score=40.29 Aligned_cols=48 Identities=13% Similarity=0.304 Sum_probs=34.6
Q ss_pred CCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCcee-EEEeecCCCceEEEecCC
Q 015588 57 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKH-RAYLKNGPKNEIIVSAGA 113 (404)
Q Consensus 57 ~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~-~v~~~~~a~keVILsAGa 113 (404)
.+.+|.+++.|++|..++++ +++||++.+..|+.. ++ .++.||+++..
T Consensus 226 ~g~~i~l~~~V~~I~~~~~~----~v~~v~~~~~~~~~~~~~-----~a~~VI~a~p~ 274 (453)
T TIGR02731 226 RGGEVRLNSRLKEIVLNEDG----SVKHFVLADGEGQRRFEV-----TADAYVSAMPV 274 (453)
T ss_pred cCCEEeCCCeeEEEEECCCC----CEEEEEEecCCCCceeEE-----ECCEEEEcCCH
Confidence 46799999999999875543 689999865333222 34 46889998864
No 82
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=75.29 E-value=12 Score=38.56 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=47.0
Q ss_pred CCCceecHHH----hhhhc-CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCC
Q 015588 40 QNGQRHTAAD----LLEYA-NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGA 113 (404)
Q Consensus 40 ~~g~R~s~~~----~l~~~-~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGa 113 (404)
+++...+... +...+ ..++++|++++.|+.|..++++ .. -|.+.+ ..|+..++ .++.||+|||+
T Consensus 176 p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~----~w-~v~v~~t~~g~~~~i-----~Ad~VV~AAGa 245 (497)
T PRK13339 176 DEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDG----GW-EVTVKDRNTGEKREQ-----VADYVFIGAGG 245 (497)
T ss_pred CCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCC----CE-EEEEEecCCCceEEE-----EcCEEEECCCc
Confidence 4555554432 33333 3468999999999999776332 12 233322 23432344 37899999998
Q ss_pred cCchHHHHhhc
Q 015588 114 LGSPQLLMLSG 124 (404)
Q Consensus 114 i~TP~LLl~SG 124 (404)
.+-+|+..+|
T Consensus 246 -wS~~La~~~G 255 (497)
T PRK13339 246 -GAIPLLQKSG 255 (497)
T ss_pred -chHHHHHHcC
Confidence 7889999888
No 83
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=74.02 E-value=6.3 Score=40.32 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=39.3
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCchHHH
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLL 120 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~TP~LL 120 (404)
.+.+.+|++++.|++|+.+++ +++||...+. .|+..++ .++.||+++..-.+.+||
T Consensus 243 ~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~~~~~~~~~~~-----~ad~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 243 KRDGGNLLTGQRVTAIHTKGG-----RAGWVVVVDSRKQEDLNV-----KADDVVANLPPQSLLELL 299 (492)
T ss_pred HhcCCEEeCCceEEEEEEeCC-----eEEEEEEecCCCCceEEE-----ECCEEEECCCHHHHHHhc
Confidence 345789999999999998764 5889987642 1222334 368899998875555533
No 84
>PLN02661 Putative thiazole synthesis
Probab=73.93 E-value=7.1 Score=38.13 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=37.5
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe------CCC----ceeEEEeecCCCceEEEecCC
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD------ATG----AKHRAYLKNGPKNEIIVSAGA 113 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~------~~g----~~~~v~~~~~a~keVILsAGa 113 (404)
...++|++|+.++.|+.|+.+++ ++.||.+.. ..+ ....+ .+|.||||+|.
T Consensus 182 a~~~~gVkI~~~t~V~DLI~~~g-----rVaGVVvnw~~v~~~~~~~s~~dp~~I-----~AkaVVlATGh 242 (357)
T PLN02661 182 LLARPNVKLFNAVAAEDLIVKGD-----RVGGVVTNWALVAQNHDTQSCMDPNVM-----EAKVVVSSCGH 242 (357)
T ss_pred HHhcCCCEEEeCeEeeeEEecCC-----EEEEEEeecchhhhccCCCCccceeEE-----ECCEEEEcCCC
Confidence 44568999999999999999753 799998631 111 12344 47999999995
No 85
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=72.34 E-value=1.2 Score=44.84 Aligned_cols=57 Identities=23% Similarity=0.340 Sum_probs=0.0
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
+...|++|+.++.|..|+.+++ +++||.+.+..| ..++ .+|.||-|.| .-.|+-++|
T Consensus 100 l~e~gv~v~~~t~v~~v~~~~~-----~i~~V~~~~~~g-~~~i-----~A~~~IDaTG---~g~l~~~aG 156 (428)
T PF12831_consen 100 LAEAGVEVLLGTRVVDVIRDGG-----RITGVIVETKSG-RKEI-----RAKVFIDATG---DGDLAALAG 156 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-----cccccccccccc-cccc-----cccccccccc---ccccccccc
Confidence 3457999999999999999864 699999987555 5666 5899999999 368888888
No 86
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.55 E-value=9 Score=39.39 Aligned_cols=56 Identities=20% Similarity=0.187 Sum_probs=41.7
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHH
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl 121 (404)
+.+.+.+++.++.|+.+..+++ ..+|...+..|+.+++ .++.||.|+|+ .+.+|+.
T Consensus 165 a~~~Ga~i~~~~~V~~i~~~~~------~~~v~~~~~~g~~~~i-----~a~~VVnAaG~-wa~~l~~ 220 (502)
T PRK13369 165 AAERGATILTRTRCVSARREGG------LWRVETRDADGETRTV-----RARALVNAAGP-WVTDVIH 220 (502)
T ss_pred HHHCCCEEecCcEEEEEEEcCC------EEEEEEEeCCCCEEEE-----EecEEEECCCc-cHHHHHh
Confidence 3456899999999999987642 4667776644666666 47999999997 4677765
No 87
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=70.87 E-value=11 Score=38.96 Aligned_cols=56 Identities=23% Similarity=0.226 Sum_probs=40.9
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcCchHHHH
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~TP~LLl 121 (404)
+.+.+.+++.++.|++|..+++ ..+|.+.+ .+|+..++ .++.||+|+|+ .+.+|+.
T Consensus 165 A~~~Ga~i~~~~~V~~i~~~~~------~~~v~~~~~~~g~~~~i-----~a~~VVnAaG~-wa~~l~~ 221 (508)
T PRK12266 165 AAERGAEILTRTRVVSARRENG------LWHVTLEDTATGKRYTV-----RARALVNAAGP-WVKQFLD 221 (508)
T ss_pred HHHcCCEEEcCcEEEEEEEeCC------EEEEEEEEcCCCCEEEE-----EcCEEEECCCc-cHHHHHh
Confidence 3456899999999999876542 45777765 23555566 47999999997 4667764
No 88
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=70.81 E-value=3.9 Score=42.66 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=57.6
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcC-----chHHHHhhc-----
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG-----SPQLLMLSG----- 124 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~-----TP~LLl~SG----- 124 (404)
..+++++.+..|.+++.++.. .+.||...+. +|+.+.+ .+|.||||.|..+ |+-....+|
T Consensus 151 ~~~~~~~~~~~~~~l~~~~~~----~v~Gvv~~~~~~g~~~~~-----~akavilaTGG~g~~~~~~t~~~~~tGdG~~m 221 (562)
T COG1053 151 FSGIEIFDEYFVLDLLVDDGG----GVAGVVARDLRTGELYVF-----RAKAVILATGGAGRLYPYTTNAHIGTGDGVAM 221 (562)
T ss_pred hhcchhhhhhhhhhheecCCC----cEEEEEEEEecCCcEEEE-----ecCcEEEccCCceEEEeccCCccccCCcHHHH
Confidence 367899999999999998753 4899988763 4665555 3699999999988 666666655
Q ss_pred --CCCceeeecCcccCCcCcCCCCc
Q 015588 125 --AHNITVVLDQPLVGQGMSDNPMN 147 (404)
Q Consensus 125 --~~gI~~~~d~p~VG~nl~DH~~~ 147 (404)
..|.+ .. ..++.|-||..
T Consensus 222 a~~aGa~-l~----dme~~Q~hpt~ 241 (562)
T COG1053 222 AYRAGAP-LI----DMEFVQFHPTG 241 (562)
T ss_pred HHhcCCc-cc----CCCccccccce
Confidence 66665 22 34677888764
No 89
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=70.19 E-value=22 Score=35.15 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=37.9
Q ss_pred hhhhcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchH
Q 015588 50 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118 (404)
Q Consensus 50 ~l~~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~ 118 (404)
++...++.|++|++++.|..|..++. +-.+...+|+ ++ .++.+|||.|..--|+
T Consensus 117 ll~~~~~~gV~i~~~~~v~~v~~~~~--------~f~l~t~~g~--~i-----~~d~lilAtGG~S~P~ 170 (408)
T COG2081 117 LLKELEALGVTIRTRSRVSSVEKDDS--------GFRLDTSSGE--TV-----KCDSLILATGGKSWPK 170 (408)
T ss_pred HHHHHHHcCcEEEecceEEeEEecCc--------eEEEEcCCCC--EE-----EccEEEEecCCcCCCC
Confidence 44445678999999999999987652 2333334565 44 3689999999766664
No 90
>PRK07208 hypothetical protein; Provisional
Probab=68.80 E-value=11 Score=38.29 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=36.9
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHH
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 119 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~L 119 (404)
..+.+|++++.|++|..++++ .+++|.+.+.+|+.+++ .++.||++.-.-....+
T Consensus 230 ~~g~~i~~~~~V~~I~~~~~~----~v~~~~~~~~~g~~~~~-----~ad~VI~a~p~~~l~~~ 284 (479)
T PRK07208 230 ALGGKVVLNAKVVGLHHDGDG----RIAVVVVNDTDGTEETV-----TADQVISSMPLRELVAA 284 (479)
T ss_pred HcCCEEEeCCEEEEEEEcCCc----EEEEEEEEcCCCCEEEE-----EcCEEEECCCHHHHHHh
Confidence 346899999999999998653 46666665445654455 36788887765333333
No 91
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=68.45 E-value=18 Score=36.75 Aligned_cols=58 Identities=22% Similarity=0.505 Sum_probs=46.2
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCc
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 114 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai 114 (404)
.++..++....+++|+.|.++.++ +..+|+++++.. +|+..++.+ ...+-||+.-|++
T Consensus 216 ~L~~~GV~F~~~t~V~di~~~~~~-~~~~~~~i~~~~-~g~~~~i~l--~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 216 YLKSQGVDFRFNTKVTDIDFDITG-DKKTATRIHIEQ-DGKEETIDL--GPDDLVFVTNGSM 273 (500)
T ss_pred HHHHCCCEEECCCEEEEEEEEccC-CCeeEEEEEEEc-CCCeeEEEe--CCCCEEEEECCcc
Confidence 345579999999999999998654 446799999874 677776665 4889999999973
No 92
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=68.21 E-value=4.8 Score=40.06 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=28.2
Q ss_pred eecCCCeeeeccCceEe-eccccCCCCCCChHHHHHHHHHHHH
Q 015588 349 VVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMG 390 (404)
Q Consensus 349 VVD~~lrV~Gv~nLrVv-DaSv~P~~~~~np~~t~~aiaer~A 390 (404)
+||++|++.|.+|+|++ |++.++.. +|.-++.-+|++.+
T Consensus 281 ~V~~~L~~~~~~~IFa~GD~A~~~~~---~p~P~tAQ~A~Qqg 320 (405)
T COG1252 281 VVNPTLQVPGHPDIFAAGDCAAVIDP---RPVPPTAQAAHQQG 320 (405)
T ss_pred EeCCCcccCCCCCeEEEeccccCCCC---CCCCChhHHHHHHH
Confidence 89999999999999998 77778765 43333444444444
No 93
>PRK06185 hypothetical protein; Provisional
Probab=67.38 E-value=18 Score=35.81 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=37.3
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCc
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 114 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai 114 (404)
..++++++.++.|+.+..+++ +++||.+...+|+ .++ .++-||.|.|+-
T Consensus 120 ~~~~v~i~~~~~v~~~~~~~~-----~v~~v~~~~~~g~-~~i-----~a~~vI~AdG~~ 168 (407)
T PRK06185 120 AYPNFTLRMGAEVTGLIEEGG-----RVTGVRARTPDGP-GEI-----RADLVVGADGRH 168 (407)
T ss_pred hCCCcEEEeCCEEEEEEEeCC-----EEEEEEEEcCCCc-EEE-----EeCEEEECCCCc
Confidence 347999999999999988754 5888888653443 345 368999999974
No 94
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=65.96 E-value=13 Score=36.81 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=39.4
Q ss_pred hhcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 52 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 52 ~~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
..+.+.+.+++.++.|+.|..++++ ++++|+.. +| ++ .++.||+|||+ .++.++...|
T Consensus 191 ~~a~~~Gv~~~~~~~V~~i~~~~~~----~~~~v~t~--~g---~i-----~a~~vVvaagg-~~~~l~~~~g 248 (407)
T TIGR01373 191 RGADRRGVDIIQNCEVTGFIRRDGG----RVIGVETT--RG---FI-----GAKKVGVAVAG-HSSVVAAMAG 248 (407)
T ss_pred HHHHHCCCEEEeCCEEEEEEEcCCC----cEEEEEeC--Cc---eE-----ECCEEEECCCh-hhHHHHHHcC
Confidence 3444568999999999999764332 46777653 34 24 36789999998 4566665444
No 95
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=65.30 E-value=9.5 Score=36.39 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=34.0
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCC
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 113 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGa 113 (404)
.+...+.+++.++.|+.|..+++ ++++|... +| ++ .++.||+|+|+
T Consensus 146 ~~~~~g~~~~~~~~v~~i~~~~~-----~~~~v~~~--~g---~~-----~a~~vV~a~G~ 191 (337)
T TIGR02352 146 ALEKLGVEIIEHTEVQHIEIRGE-----KVTAIVTP--SG---DV-----QADQVVLAAGA 191 (337)
T ss_pred HHHHcCCEEEccceEEEEEeeCC-----EEEEEEcC--CC---EE-----ECCEEEEcCCh
Confidence 33456899999999999987643 57888642 34 34 36899999997
No 96
>PRK08401 L-aspartate oxidase; Provisional
Probab=65.00 E-value=51 Score=33.51 Aligned_cols=49 Identities=20% Similarity=0.254 Sum_probs=33.2
Q ss_pred CCc-eecCCCeeeeccCceEeeccc----cCC-CCCCChHHHHHHHHHHHHHHHHh
Q 015588 346 VGK-VVDHDYKVLGVDALRVIDGST----FYY-SPGTNPQATVMMLGRYMGVRILS 395 (404)
Q Consensus 346 MG~-VVD~~lrV~Gv~nLrVvDaSv----~P~-~~~~np~~t~~aiaer~A~~ii~ 395 (404)
||+ .||.++| --++|||.+.-.. .-. -.++|..+-.+..+.++++.+.+
T Consensus 310 ~GGi~vd~~~~-t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 310 IGGISVDTFYR-TGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CCCEEECCCCc-ccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 454 5999999 4799999986533 211 13456667777778887777644
No 97
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=64.39 E-value=7.3 Score=38.71 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=32.0
Q ss_pred CCCceecCCCeeeeccCceEe-eccccCCCCCCChHHHHHHHHHHHHHHHHh
Q 015588 345 QVGKVVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRILS 395 (404)
Q Consensus 345 rMG~VVD~~lrV~Gv~nLrVv-DaSv~P~~~~~np~~t~~aiaer~A~~ii~ 395 (404)
|=|=.||+.|||.|++|+|-+ |++.+|.... +.-+|++-++.+.+
T Consensus 345 rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~------tAQVA~QqG~yLAk 390 (491)
T KOG2495|consen 345 RRGLAVDEWLRVKGVKNVFAIGDCADQRGLKP------TAQVAEQQGAYLAK 390 (491)
T ss_pred ceeeeeeceeeccCcCceEEeccccccccCcc------HHHHHHHHHHHHHH
Confidence 445699999999999999955 7774554432 45677777766543
No 98
>PLN02487 zeta-carotene desaturase
Probab=64.33 E-value=11 Score=39.31 Aligned_cols=60 Identities=13% Similarity=0.214 Sum_probs=40.4
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHH
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 120 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LL 120 (404)
.+.+.+|++++.|++|+.+.+.++..+++||++.. +++...+ .++.||++++.-...+||
T Consensus 306 ~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~-----~aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 306 TDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIV-----KADAYVAACDVPGIKRLL 365 (569)
T ss_pred HHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEE-----ECCEEEECCCHHHHHHhC
Confidence 45688999999999999985321123589999852 2333334 368899988865444443
No 99
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=64.26 E-value=15 Score=36.34 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=36.9
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl 121 (404)
.+.+.+.+|++++.|++|..+++ ++++|+.. .+ ++ .++.||+|+|+ .+..|+.
T Consensus 210 ~~~~~G~~i~~~~~V~~i~~~~~-----~~~~v~t~--~~---~~-----~a~~VV~a~G~-~~~~l~~ 262 (416)
T PRK00711 210 MAEQLGVKFRFNTPVDGLLVEGG-----RITGVQTG--GG---VI-----TADAYVVALGS-YSTALLK 262 (416)
T ss_pred HHHHCCCEEEcCCEEEEEEecCC-----EEEEEEeC--Cc---EE-----eCCEEEECCCc-chHHHHH
Confidence 34456899999999999987643 46676542 23 34 36899999998 4555554
No 100
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=63.87 E-value=16 Score=38.44 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=34.9
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcC
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
..+|++|+ ++.|+.|+.+++ +++||... +|. .+ .++.||+|+|++-
T Consensus 112 ~~~nV~I~-q~~V~~Li~e~g-----rV~GV~t~--dG~--~I-----~Ak~VIlATGTFL 157 (618)
T PRK05192 112 NQPNLDLF-QGEVEDLIVENG-----RVVGVVTQ--DGL--EF-----RAKAVVLTTGTFL 157 (618)
T ss_pred cCCCcEEE-EeEEEEEEecCC-----EEEEEEEC--CCC--EE-----ECCEEEEeeCcch
Confidence 45799985 678999988764 69999874 353 34 4799999999853
No 101
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=62.49 E-value=27 Score=36.10 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=44.7
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCchHHHHhh
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 123 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~TP~LLl~S 123 (404)
.+|+++++++.|++|.-+++ ++++|++.+. +|+..++ ..+.|+++.|..-.+.+|..+
T Consensus 399 ~~gI~i~~~~~v~~i~~~~g-----~v~~v~~~~~~~g~~~~i-----~~D~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 399 LPNVTIITNAQTTEVTGDGD-----KVTGLTYKDRTTGEEHHL-----ELEGVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred CCCcEEEECcEEEEEEcCCC-----cEEEEEEEECCCCcEEEE-----EcCEEEEeECCccCchHHhhh
Confidence 47999999999999975432 6889998763 4555555 478999999998888877643
No 102
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=62.02 E-value=25 Score=34.80 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=37.3
Q ss_pred hhcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCc-eeEEEeecCCCceEEEecCCcCchHHHHh
Q 015588 52 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLML 122 (404)
Q Consensus 52 ~~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~-~~~v~~~~~a~keVILsAGai~TP~LLl~ 122 (404)
..+.+.+.+|+.++.|++|..+++ .+ .|.+.+..+. ..++ .++.||+|+|+ .++.|+..
T Consensus 205 ~~a~~~G~~i~~~~~V~~i~~~~~-----~~-~v~~~~~~~~~~~~i-----~a~~vV~a~G~-~s~~l~~~ 264 (410)
T PRK12409 205 AACARLGVQFRYGQEVTSIKTDGG-----GV-VLTVQPSAEHPSRTL-----EFDGVVVCAGV-GSRALAAM 264 (410)
T ss_pred HHHHhCCCEEEcCCEEEEEEEeCC-----EE-EEEEEcCCCCccceE-----ecCEEEECCCc-ChHHHHHH
Confidence 344556899999999999986543 23 3444332110 2234 36999999997 55666543
No 103
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=61.96 E-value=17 Score=35.44 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=34.1
Q ss_pred hhh-hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHH
Q 015588 50 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 119 (404)
Q Consensus 50 ~l~-~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~L 119 (404)
|+. .+++=.-.|..+++|++|..+... +. ...-|+..+.+|...++ .+|.|||+.| .+|.|
T Consensus 100 Yl~Wva~~~~~~v~~~~~V~~I~~~~~~-~~-~~~~V~~~~~~g~~~~~-----~ar~vVla~G--~~P~i 161 (341)
T PF13434_consen 100 YLRWVAEQLDNQVRYGSEVTSIEPDDDG-DE-DLFRVTTRDSDGDGETY-----RARNVVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHCCGTTTEEESEEEEEEEEEEET-TE-EEEEEEEEETTS-EEEE-----EESEEEE------EE--
T ss_pred HHHHHHHhCCCceEECCEEEEEEEecCC-Cc-cEEEEEEeecCCCeeEE-----EeCeEEECcC--CCCCC
Confidence 444 333323347889999999998653 11 34556665556766665 3789999999 55553
No 104
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=61.87 E-value=6.2 Score=39.50 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=41.0
Q ss_pred hhcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHH
Q 015588 52 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121 (404)
Q Consensus 52 ~~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl 121 (404)
+.+.+.+-+|.|++.|..|++|++ +|+||.+.+ |+. ++ +|.||==|+-..|=.-|+
T Consensus 272 ~~~~~~GaeI~tka~Vq~Illd~g-----ka~GV~L~d--G~e--v~-----sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 272 EGAKRAGAEIFTKATVQSILLDSG-----KAVGVRLAD--GTE--VR-----SKIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHhccceeeehhhhhheeccCC-----eEEEEEecC--CcE--EE-----eeeeecCCchHHHHHHhC
Confidence 456678899999999999999983 799999974 643 42 466666666666653333
No 105
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=61.81 E-value=16 Score=37.38 Aligned_cols=60 Identities=15% Similarity=0.303 Sum_probs=40.3
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHH
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 120 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LL 120 (404)
.+.+.+|++++.|++|..++..++..+++||++.+.++ ..++ .++.||+|..+-...+||
T Consensus 230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~-----~aD~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVI-----KADAYVAACDVPGIKRLL 289 (474)
T ss_pred HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEE-----ECCEEEECCChHHHHhhC
Confidence 34678999999999999875210111488998853222 1233 368899999987776665
No 106
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=61.29 E-value=36 Score=31.65 Aligned_cols=56 Identities=16% Similarity=0.291 Sum_probs=41.0
Q ss_pred CCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCchHHHHhh
Q 015588 57 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 123 (404)
Q Consensus 57 ~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~TP~LLl~S 123 (404)
.++++++++++++|.-++ ++.+|++.+. .|+.+++ ..+.||+|.|....+.+|..+
T Consensus 190 ~gv~~~~~~~v~~i~~~~------~~~~v~~~~~~~g~~~~i-----~~D~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGDN------KVEGVKIKNTVTGEEEEL-----KVDGVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CCeEEEeccEEEEEEccC------cEEEEEEEecCCCceEEE-----EccEEEEeeCCCCChHHHHHh
Confidence 499999999999986432 4778887642 3555555 478999999977766666654
No 107
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=57.68 E-value=19 Score=36.62 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=41.0
Q ss_pred hhh-hcCCCCeE--EecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 50 LLE-YANPSGLT--LLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 50 ~l~-~~~r~nl~--v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
||. .+++-++. |..+++|++|..+++ -.-|...+.++...+. ..+.||||.|....|++.-.-|
T Consensus 116 YL~~~a~~fgl~~~I~~~t~V~~V~~~~~------~w~V~~~~~~~~~~~~-----~~d~VIvAtG~~~~P~~P~ipG 182 (461)
T PLN02172 116 YLQDFAREFKIEEMVRFETEVVRVEPVDG------KWRVQSKNSGGFSKDE-----IFDAVVVCNGHYTEPNVAHIPG 182 (461)
T ss_pred HHHHHHHHcCCcceEEecCEEEEEeecCC------eEEEEEEcCCCceEEE-----EcCEEEEeccCCCCCcCCCCCC
Confidence 554 34445666 899999999976532 1223433322222222 3589999999998999887665
No 108
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.17 E-value=28 Score=33.90 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=46.9
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCchHHHHhh
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 123 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~TP~LLl~S 123 (404)
.-+|++|+++++-+.|.=|++ +++|.+|.+. .|+.+.+. =.-|.+--|-+-+..+|.-|
T Consensus 401 sl~Nv~ii~na~Ttei~Gdg~-----kV~Gl~Y~dr~sge~~~l~-----LeGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 401 SLPNVTIITNAQTTEVKGDGD-----KVTGLEYRDRVSGEEHHLE-----LEGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred cCCCcEEEecceeeEEecCCc-----eecceEEEeccCCceeEEE-----eeeeEEEEecccChhHhhch
Confidence 448999999999999876654 6999999884 47777774 35778888888888888744
No 109
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=57.07 E-value=7.6 Score=39.88 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=37.6
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHH
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 119 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~L 119 (404)
..+||+|+-+ .|+.|+.+++. +++||... +|..+ .+|.|||++|++-.-+|
T Consensus 112 ~~~NL~l~q~-~v~dli~e~~~----~v~GV~t~--~G~~~-------~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 112 NQPNLHLLQG-EVEDLIVEEGQ----RVVGVVTA--DGPEF-------HAKAVVLTTGTFLRGKI 162 (621)
T ss_pred cCCCceehHh-hhHHHhhcCCC----eEEEEEeC--CCCee-------ecCEEEEeecccccceE
Confidence 4689999876 58888886652 69999875 46532 47899999998755444
No 110
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=56.80 E-value=30 Score=34.14 Aligned_cols=55 Identities=22% Similarity=0.149 Sum_probs=38.5
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
.+.+.+.+++.++.|++|..+++ . ..|+. .+| ++ .++.||+|+|+ .++.++...|
T Consensus 158 ~~~~~Gv~i~~~~~V~~i~~~~~-----~-~~V~~--~~g---~i-----~ad~vV~A~G~-~s~~l~~~~g 212 (393)
T PRK11728 158 LIQARGGEIRLGAEVTALDEHAN-----G-VVVRT--TQG---EY-----EARTLINCAGL-MSDRLAKMAG 212 (393)
T ss_pred HHHhCCCEEEcCCEEEEEEecCC-----e-EEEEE--CCC---EE-----EeCEEEECCCc-chHHHHHHhC
Confidence 33456899999999999876543 2 24443 234 34 36899999998 6888887666
No 111
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=56.69 E-value=67 Score=32.76 Aligned_cols=71 Identities=13% Similarity=0.003 Sum_probs=36.7
Q ss_pred CChHHHHHHHHhhcccccccccccCCCceecCCCeeeeccCceEeeccccCCCCCCChHHHHHHHHHHHHHHHHhh
Q 015588 321 NASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 396 (404)
Q Consensus 321 ~~d~~~~~~i~~~~~~~~H~~GTcrMG~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~t~~aiaer~A~~ii~~ 396 (404)
.|..+++.|....-.+.||..=+......--...| -.++|||.|.+|++|- ++. | .+++=|..+|+.|+++
T Consensus 421 ~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~-t~i~gLyl~G~~~~pG-~Gv-~--g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 421 ATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSR-TPVKGLWLCGDSIHPG-EGT-A--GVSYSALMVVRQILAS 491 (492)
T ss_pred cCCchHHHHhCCCCcEECCCCcCccccCCcCCCCC-CCCCCeEEecCccCCC-CcH-H--HHHHHHHHHHHHHhhc
Confidence 45566776654433444443322221111111223 3799999999999883 122 1 2334456666666653
No 112
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=56.68 E-value=9.9 Score=38.41 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=40.1
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHH
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 120 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LL 120 (404)
..+||+|+-++.+.=|+.+.+. +..+++||...+ |. .| .++-|||..|+|-+.+|-
T Consensus 136 st~nL~ire~~V~dliv~~~~~-~~~~~~gV~l~d--gt--~v-----~a~~VilTTGTFL~~~I~ 191 (679)
T KOG2311|consen 136 STPNLEIREGAVADLIVEDPDD-GHCVVSGVVLVD--GT--VV-----YAESVILTTGTFLRGQIN 191 (679)
T ss_pred cCCcchhhhhhhhheeeccCCC-CceEEEEEEEec--Cc--Ee-----ccceEEEeeccceeeEEe
Confidence 4689999998755555555443 446799999875 54 34 378999999998776654
No 113
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=54.73 E-value=36 Score=33.41 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=31.2
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCC
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 113 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGa 113 (404)
.+.+ +.+++.++.|+.|..+++ + .+|+. .+|.. + .++.||+|+|+
T Consensus 144 ~~~~-G~~i~~~~~V~~i~~~~~-----~-~~v~t--~~g~~--~-----~a~~vV~a~G~ 188 (381)
T TIGR03197 144 HAGI-RLTLHFNTEITSLERDGE-----G-WQLLD--ANGEV--I-----AASVVVLANGA 188 (381)
T ss_pred ccCC-CcEEEeCCEEEEEEEcCC-----e-EEEEe--CCCCE--E-----EcCEEEEcCCc
Confidence 4456 899999999999986542 2 33433 34532 3 36899999996
No 114
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=54.48 E-value=25 Score=37.02 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=37.8
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHH
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl 121 (404)
..+|++++.+ .|+.++.+.++ ++.||+.. +|. .+ .++.||||+|++...++..
T Consensus 108 ~~pgV~Ile~-~Vv~li~e~~g----~V~GV~t~--~G~--~I-----~Ad~VILATGtfL~g~ihi 160 (617)
T TIGR00136 108 NQPNLSLFQG-EVEDLILEDND----EIKGVVTQ--DGL--KF-----RAKAVIITTGTFLRGKIHI 160 (617)
T ss_pred cCCCcEEEEe-EEEEEEEecCC----cEEEEEEC--CCC--EE-----ECCEEEEccCcccCCCEEe
Confidence 4579999855 78888776332 69999875 353 34 3689999999987555544
No 115
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=54.16 E-value=10 Score=38.80 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=47.2
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCchHHHH
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~TP~LLl 121 (404)
.|.+.+++-+..|.+++-++++ ++.|++++|. .|+.++++ +|.||=|+|.+.-.-..|
T Consensus 235 ~r~GA~v~Nh~ev~~Llkd~~~----kv~Ga~~rD~iTG~e~~I~-----Ak~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 235 ARNGATVLNHVEVVSLLKDKDG----KVIGARARDHITGKEYEIR-----AKVVVNATGPFSDSIRKM 293 (680)
T ss_pred HhcchhhhhHHHHHHHhhCCCC----ceeeeEEEEeecCcEEEEE-----EEEEEeCCCCccHHHHhh
Confidence 4678899999999999988764 7999999884 58888885 799999999875544444
No 116
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=52.65 E-value=25 Score=33.28 Aligned_cols=60 Identities=25% Similarity=0.283 Sum_probs=41.0
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
+.++.|++++.+. |..|- +.+ .|.++|-+....+..+.. ....||||||. -|++||..-+
T Consensus 157 a~k~~~V~lv~Gk-v~ev~-dEk----~r~n~v~~ae~~~ti~~~-----d~~~ivvsaGP-WTskllp~~r 216 (380)
T KOG2852|consen 157 AEKRGGVKLVFGK-VKEVS-DEK----HRINSVPKAEAEDTIIKA-----DVHKIVVSAGP-WTSKLLPFTR 216 (380)
T ss_pred HHhhcCeEEEEee-eEEee-ccc----ccccccchhhhcCceEEe-----eeeEEEEecCC-Cchhhccccc
Confidence 4467899999985 55554 322 378888775322322222 45799999998 7999998876
No 117
>PLN02985 squalene monooxygenase
Probab=52.19 E-value=41 Score=34.73 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=37.9
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchH
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~ 118 (404)
..+|+++..+ .|+.++.+++ .++||++.+.+|+..++ .++-||.|.|....-|
T Consensus 159 ~~~~V~i~~g-tvv~li~~~~-----~v~gV~~~~~dG~~~~~-----~AdLVVgADG~~S~vR 211 (514)
T PLN02985 159 SLPNVRLEEG-TVKSLIEEKG-----VIKGVTYKNSAGEETTA-----LAPLTVVCDGCYSNLR 211 (514)
T ss_pred hCCCeEEEee-eEEEEEEcCC-----EEEEEEEEcCCCCEEEE-----ECCEEEECCCCchHHH
Confidence 4579999865 5777766543 58899987656766665 3789999999755444
No 118
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=52.02 E-value=36 Score=31.60 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=40.7
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC----CC---ceeEEEeecCCCceEEEecCC-cCchHHHHhh
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA----TG---AKHRAYLKNGPKNEIIVSAGA-LGSPQLLMLS 123 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~----~g---~~~~v~~~~~a~keVILsAGa-i~TP~LLl~S 123 (404)
+.+.+++.++.|+.|+.+++. .+++||..... .| ...++ .+|-||.|.|. =.-.+.|..-
T Consensus 112 e~GV~I~~~t~V~dli~~~~~---~~V~GVv~~~~~v~~~g~~~d~~~i-----~Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 112 QAGAKIFNGTSVEDLITRDDT---VGVAGVVINWSAIELAGLHVDPLTQ-----RSRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HcCCEEECCcEEEEEEEeCCC---CceEEEEeCCccccccCCCCCCEEE-----EcCEEEEeecCCchHHHHHHHH
Confidence 357999999999999987642 36999987421 12 23455 47999999993 2334555544
No 119
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=50.58 E-value=32 Score=33.46 Aligned_cols=50 Identities=30% Similarity=0.365 Sum_probs=33.4
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHH
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 120 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LL 120 (404)
+.+.+.+++.++.|++|..+++ -..|+ ..+| ++ .++.||+|+|+. +++|+
T Consensus 159 ~~~~gv~i~~~~~v~~i~~~~~------~~~v~--~~~g---~~-----~a~~vV~A~G~~-~~~l~ 208 (376)
T PRK11259 159 AREAGAELLFNEPVTAIEADGD------GVTVT--TADG---TY-----EAKKLVVSAGAW-VKDLL 208 (376)
T ss_pred HHHCCCEEECCCEEEEEEeeCC------eEEEE--eCCC---EE-----EeeEEEEecCcc-hhhhc
Confidence 3456899999999999987543 12343 3334 34 368999999974 44444
No 120
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.32 E-value=30 Score=35.46 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=35.6
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl 121 (404)
.+...+.+|.+++.|++|+.+++ + ||.+...+| ..+ .++.||..+.. ..++.|.
T Consensus 233 ~~~~~Gg~I~~~~~V~~I~v~~g-----~--g~~~~~~~g--~~~-----~ad~vv~~~~~-~~~~~l~ 286 (487)
T COG1233 233 LAREHGGEIRTGAEVSQILVEGG-----K--GVGVRTSDG--ENI-----EADAVVSNADP-ALLARLL 286 (487)
T ss_pred HHHHcCCEEECCCceEEEEEeCC-----c--ceEEecccc--cee-----ccceeEecCch-hhhhhhh
Confidence 44556899999999999999875 4 444444345 333 46777777766 4444444
No 121
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=47.91 E-value=32 Score=33.46 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=30.3
Q ss_pred eecCCCeeeeccCceEe-eccccCCCCCCChHHHHHHHHHHHHHHHHh
Q 015588 349 VVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRILS 395 (404)
Q Consensus 349 VVD~~lrV~Gv~nLrVv-DaSv~P~~~~~np~~t~~aiaer~A~~ii~ 395 (404)
.||.++|+.+.+|+|++ |++.++..+.......++.-|..+|..|.+
T Consensus 261 ~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 261 RVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred EECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHH
Confidence 79999999999999998 566565444332223344455555555544
No 122
>PRK10262 thioredoxin reductase; Provisional
Probab=46.43 E-value=80 Score=30.02 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=41.6
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCC--CceeEEEeecCCCceEEEecCCcCchHHHH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDAT--GAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~--g~~~~v~~~~~a~keVILsAGai~TP~LLl 121 (404)
.+...++++++++.|++|.-++. ++++|++.+.. +...++ ..+.||++.|..-...|+.
T Consensus 194 ~l~~~gV~i~~~~~v~~v~~~~~-----~~~~v~~~~~~~~~~~~~i-----~~D~vv~a~G~~p~~~l~~ 254 (321)
T PRK10262 194 KVENGNIILHTNRTLEEVTGDQM-----GVTGVRLRDTQNSDNIESL-----DVAGLFVAIGHSPNTAIFE 254 (321)
T ss_pred hccCCCeEEEeCCEEEEEEcCCc-----cEEEEEEEEcCCCCeEEEE-----ECCEEEEEeCCccChhHhh
Confidence 34467899999999999864332 47888887532 333445 4799999999877766553
No 123
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=46.14 E-value=22 Score=26.54 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=27.1
Q ss_pred eccCceEeeccccCCCCCCChHHHHHHHHHH
Q 015588 358 GVDALRVIDGSTFYYSPGTNPQATVMMLGRY 388 (404)
Q Consensus 358 Gv~nLrVvDaSv~P~~~~~np~~t~~aiaer 388 (404)
.+.|.+|+|..+.|..|.....+-++++|.=
T Consensus 37 ~~~~~~ivd~A~~P~~P~~P~~~lil~l~~~ 67 (82)
T PF13807_consen 37 NVSNVRIVDPAIVPDKPVSPKRALILALGLF 67 (82)
T ss_pred cCCCceeccccccCCCCCCCcHHHHHHHHHH
Confidence 4669999999999999999988888888863
No 124
>PRK06126 hypothetical protein; Provisional
Probab=46.10 E-value=46 Score=34.50 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=35.7
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeecCCCceEEEecCCcC
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
+.+|++|..++.|++|..+++ .++ |.+.+ .+|+.+++. ++-||.|.|+-.
T Consensus 138 ~~~~v~i~~~~~v~~i~~~~~-----~v~-v~~~~~~~g~~~~i~-----ad~vVgADG~~S 188 (545)
T PRK06126 138 AQPGVTLRYGHRLTDFEQDAD-----GVT-ATVEDLDGGESLTIR-----ADYLVGCDGARS 188 (545)
T ss_pred hCCCceEEeccEEEEEEECCC-----eEE-EEEEECCCCcEEEEE-----EEEEEecCCcch
Confidence 357899999999999987654 244 45544 346656663 689999999733
No 125
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=45.73 E-value=71 Score=32.96 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=41.8
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCcCchHHHH
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai~TP~LLl 121 (404)
+.+++|++++.|++|.-+++ +.++|++.+. +|+..++ ..+.||+|.|..-+..+|.
T Consensus 400 ~~gV~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~~~~~i-----~~D~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGDGD-----KVTGIRYQDRNSGEEKQL-----DLDGVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCCEEEECCeeEEEEcCCC-----EEEEEEEEECCCCcEEEE-----EcCEEEEEeCCcCCchHHh
Confidence 36899999999999864322 6888988753 3444555 4789999999887777764
No 126
>PRK07121 hypothetical protein; Validated
Probab=44.27 E-value=36 Score=34.79 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=40.8
Q ss_pred ccccCCCc-eecCC-Ceeee-----ccCceEee---ccccCC-CCCCChHHHHHHHHHHHHHHHHhh
Q 015588 341 HGGCQVGK-VVDHD-YKVLG-----VDALRVID---GSTFYY-SPGTNPQATVMMLGRYMGVRILSE 396 (404)
Q Consensus 341 ~GTcrMG~-VVD~~-lrV~G-----v~nLrVvD---aSv~P~-~~~~np~~t~~aiaer~A~~ii~~ 396 (404)
.-.+-||+ ++|.+ +||.. ++|||.+. ++++-. -+++|..+..+..+..+++.+.++
T Consensus 424 ~~~~T~GGl~id~~~~qVld~~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 424 TPGFTLGGLRVDEDTGEVLRADGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred cceeeccCeeECCCcceEECCCCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 34455775 69999 99997 89999998 345532 246888888888898877766543
No 127
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=40.66 E-value=76 Score=32.04 Aligned_cols=71 Identities=20% Similarity=0.327 Sum_probs=47.5
Q ss_pred CCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc---------CCC
Q 015588 57 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG---------AHN 127 (404)
Q Consensus 57 ~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG---------~~g 127 (404)
-+.+++.+++|+.|+++++ .+.+|... +|+. + .+++||||-|-=+.--+=++.- +..
T Consensus 186 ~G~ei~f~t~VeDi~~~~~-----~~~~v~~~--~g~~--i-----~~~~vvlA~Grsg~dw~~~l~~K~Gv~~~~~p~d 251 (486)
T COG2509 186 LGGEIRFNTEVEDIEIEDN-----EVLGVKLT--KGEE--I-----EADYVVLAPGRSGRDWFEMLHKKLGVKMRAKPFD 251 (486)
T ss_pred cCcEEEeeeEEEEEEecCC-----ceEEEEcc--CCcE--E-----ecCEEEEccCcchHHHHHHHHHhcCcccccCCee
Confidence 3599999999999999875 37777664 3543 3 4799999999433322222222 455
Q ss_pred ceeeecCcccCCcCcCC
Q 015588 128 ITVVLDQPLVGQGMSDN 144 (404)
Q Consensus 128 I~~~~d~p~VG~nl~DH 144 (404)
|.|.++.| +.++|+
T Consensus 252 IGVRvE~p---~~vmd~ 265 (486)
T COG2509 252 IGVRVEHP---QSVMDP 265 (486)
T ss_pred EEEEEecc---hHhhCc
Confidence 66777766 666665
No 128
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=40.55 E-value=58 Score=31.65 Aligned_cols=54 Identities=26% Similarity=0.271 Sum_probs=35.1
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
+.+.+.+++.++.|++|..+++ .+ .|+. .++ ++ .++.||+|+|+. +++|+..-|
T Consensus 155 ~~~~g~~~~~~~~V~~i~~~~~-----~~-~v~~--~~~---~i-----~a~~vV~aaG~~-~~~l~~~~g 208 (380)
T TIGR01377 155 AEAHGATVRDGTKVVEIEPTEL-----LV-TVKT--TKG---SY-----QANKLVVTAGAW-TSKLLSPLG 208 (380)
T ss_pred HHHcCCEEECCCeEEEEEecCC-----eE-EEEe--CCC---EE-----EeCEEEEecCcc-hHHHhhhcc
Confidence 3456899999999999976543 23 3543 233 34 368999999984 455654333
No 129
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=40.47 E-value=75 Score=35.77 Aligned_cols=59 Identities=22% Similarity=0.209 Sum_probs=45.0
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
.+.+++|++++.|++|.-+ .++.+|++...+|...++ .++.|+++.|..-+..|+...|
T Consensus 362 ~~~GV~i~~~~~v~~i~g~------~~v~~V~l~~~~g~~~~i-----~~D~V~va~G~~Pnt~L~~~lg 420 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEGG------KRVSGVAVARNGGAGQRL-----EADALAVSGGWTPVVHLFSQRG 420 (985)
T ss_pred HHcCCEEEcCCeEEEEecC------CcEEEEEEEecCCceEEE-----ECCEEEEcCCcCchhHHHHhcC
Confidence 4568999999999998532 258889886433444555 4799999999999999988776
No 130
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=39.87 E-value=32 Score=33.98 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=40.8
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~ 118 (404)
++..||+++.-+ +|..++-|.+ .++||+|.+..|+..+.+ +.--|+|-|.+..=|
T Consensus 157 a~slpNV~~eeG-tV~sLlee~g-----vvkGV~yk~k~gee~~~~-----ApLTvVCDGcfSnlR 211 (509)
T KOG1298|consen 157 AASLPNVRLEEG-TVKSLLEEEG-----VVKGVTYKNKEGEEVEAF-----APLTVVCDGCFSNLR 211 (509)
T ss_pred HhcCCCeEEeee-eHHHHHhccC-----eEEeEEEecCCCceEEEe-----cceEEEecchhHHHH
Confidence 335689988765 5777776654 799999998777776653 689999999875533
No 131
>PLN02612 phytoene desaturase
Probab=39.40 E-value=44 Score=35.01 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=32.6
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecC
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAG 112 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAG 112 (404)
+.+.+|.+++.|++|..++++ ++++|++. +|+. + .++.||++..
T Consensus 320 ~~G~~I~l~~~V~~I~~~~~g----~v~~v~~~--~G~~--~-----~ad~VI~a~p 363 (567)
T PLN02612 320 SLGGEVRLNSRIKKIELNDDG----TVKHFLLT--NGSV--V-----EGDVYVSATP 363 (567)
T ss_pred hcCCEEEeCCeeeEEEECCCC----cEEEEEEC--CCcE--E-----ECCEEEECCC
Confidence 347799999999999986543 67888874 4643 3 3688999865
No 132
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=39.31 E-value=93 Score=31.66 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=40.3
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe---C-------CCceeEEEeecCCCceEEEecCCcCc-hHHHHhhc
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD---A-------TGAKHRAYLKNGPKNEIIVSAGALGS-PQLLMLSG 124 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~---~-------~g~~~~v~~~~~a~keVILsAGai~T-P~LLl~SG 124 (404)
..++++++++.+++|.-++ .++++|++.. . .|+.+++ ..+.||+|.|..-. ..||...|
T Consensus 341 ~~GV~i~~~~~~~~i~~~~-----g~v~~V~~~~~~~~~g~~~~~~g~~~~i-----~~D~VI~A~G~~p~~~~l~~~~g 410 (471)
T PRK12810 341 EEGVEREFNVQTKEFEGEN-----GKVTGVKVVRTELGEGDFEPVEGSEFVL-----PADLVLLAMGFTGPEAGLLAQFG 410 (471)
T ss_pred HcCCeEEeccCceEEEccC-----CEEEEEEEEEEEecCCCccccCCceEEE-----ECCEEEECcCcCCCchhhccccC
Confidence 4689999999999996433 2799988752 1 2344555 47999999995543 45665444
No 133
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=39.02 E-value=51 Score=33.00 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=29.6
Q ss_pred eecCCCeeeeccCceEe-eccccCCCCCCChHHHHHHHHHHHHHHHHhh
Q 015588 349 VVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRILSE 396 (404)
Q Consensus 349 VVD~~lrV~Gv~nLrVv-DaSv~P~~~~~np~~t~~aiaer~A~~ii~~ 396 (404)
.||+++|+-+++|+|++ |++-++..+.......++.-|..+|..|.+.
T Consensus 298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~ 346 (424)
T PTZ00318 298 SVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNE 346 (424)
T ss_pred EeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 69999999999999976 7776654322222222344455555555443
No 134
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=36.86 E-value=1.7e+02 Score=29.06 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=34.3
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~ 118 (404)
.+.+.+.+|.+++.|++|..+++ ...|+. +++ ++ .++.||+|+|....|+
T Consensus 114 ~l~~~gv~i~~~~~V~~i~~~~~------~~~v~~---~~~--~i-----~ad~VIlAtG~~s~p~ 163 (400)
T TIGR00275 114 ELKELGVEILTNSKVKSIKKDDN------GFGVET---SGG--EY-----EADKVILATGGLSYPQ 163 (400)
T ss_pred HHHHCCCEEEeCCEEEEEEecCC------eEEEEE---CCc--EE-----EcCEEEECCCCcccCC
Confidence 44456899999999999865432 334544 233 23 3689999999977664
No 135
>PRK07233 hypothetical protein; Provisional
Probab=34.94 E-value=54 Score=32.48 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=34.8
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHH
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 120 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LL 120 (404)
...+.+|.+++.|++|..+++ ++++|.. +++ ++ .++.||+|+..-..+.||
T Consensus 209 ~~~g~~v~~~~~V~~i~~~~~-----~~~~~~~---~~~--~~-----~ad~vI~a~p~~~~~~ll 259 (434)
T PRK07233 209 EARGGEIRLGTPVTSVVIDGG-----GVTGVEV---DGE--EE-----DFDAVISTAPPPILARLV 259 (434)
T ss_pred HhcCceEEeCCCeeEEEEcCC-----ceEEEEe---CCc--eE-----ECCEEEECCCHHHHHhhc
Confidence 345679999999999987654 4666652 343 33 368899999865444443
No 136
>PRK12831 putative oxidoreductase; Provisional
Probab=34.57 E-value=1.1e+02 Score=31.18 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=38.7
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-------CC---------CceeEEEeecCCCceEEEecCCcCchHH
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-------AT---------GAKHRAYLKNGPKNEIIVSAGALGSPQL 119 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-------~~---------g~~~~v~~~~~a~keVILsAGai~TP~L 119 (404)
..++++++++.+.+|+-+.++ +++||++.. .+ |..+++ ..+.||+|.|..-...+
T Consensus 330 ~eGV~i~~~~~~~~i~~~~~g----~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i-----~~D~Vi~AiG~~p~~~~ 400 (464)
T PRK12831 330 EEGVIFDLLTNPVEILGDENG----WVKGMKCIKMELGEPDASGRRRPVEIEGSEFVL-----EVDTVIMSLGTSPNPLI 400 (464)
T ss_pred HcCCEEEecccceEEEecCCC----eEEEEEEEEEEecCcCCCCCccceecCCceEEE-----ECCEEEECCCCCCChhh
Confidence 468999999999999765433 789988751 11 233344 47899999996544444
Q ss_pred H
Q 015588 120 L 120 (404)
Q Consensus 120 L 120 (404)
|
T Consensus 401 ~ 401 (464)
T PRK12831 401 S 401 (464)
T ss_pred h
Confidence 4
No 137
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=34.18 E-value=1.3e+02 Score=30.11 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=32.8
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCC
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 113 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGa 113 (404)
+.+.+.+|++++.|+.|..+++ ++++|. .+|. ++ .++-||+|.|+
T Consensus 118 a~~~Gv~i~~~~~V~~i~~~~g-----~v~~v~---~~g~--~i-----~A~~VI~A~G~ 162 (428)
T PRK10157 118 AEEAGAQLITGIRVDNLVQRDG-----KVVGVE---ADGD--VI-----EAKTVILADGV 162 (428)
T ss_pred HHHCCCEEECCCEEEEEEEeCC-----EEEEEE---cCCc--EE-----ECCEEEEEeCC
Confidence 3456899999999999987653 466664 2343 34 36899999997
No 138
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=34.04 E-value=1e+02 Score=30.36 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=33.9
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcC
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
..+|+++..++.|++|..+++ .+.|.+.+ ++...++ .++-||.|-|+-.
T Consensus 133 ~~~~v~i~~~~~v~~v~~~~~------~~~v~~~~-~~~~~~i-----~adlvIgADG~~S 181 (415)
T PRK07364 133 SCPNITWLCPAEVVSVEYQQD------AATVTLEI-EGKQQTL-----QSKLVVAADGARS 181 (415)
T ss_pred cCCCcEEEcCCeeEEEEecCC------eeEEEEcc-CCcceEE-----eeeEEEEeCCCCc
Confidence 347899999999999976643 23366653 3433455 3699999999744
No 139
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=33.01 E-value=1.2e+02 Score=31.39 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=38.6
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHH
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl 121 (404)
.++++|..+++|+.|..+++ .+ .|++.+.+|+.+++. ++-||-|-|+-.+-+=++
T Consensus 126 ~~gv~v~~g~~v~~i~~~~~-----~v-~v~~~~~~G~~~~i~-----ad~vVgADG~~S~vR~~l 180 (538)
T PRK06183 126 FPHVRVRFGHEVTALTQDDD-----GV-TVTLTDADGQRETVR-----ARYVVGCDGANSFVRRTL 180 (538)
T ss_pred CCCcEEEcCCEEEEEEEcCC-----eE-EEEEEcCCCCEEEEE-----EEEEEecCCCchhHHHHc
Confidence 46899999999999987654 22 355654457656663 689999999855554433
No 140
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=32.98 E-value=1.3e+02 Score=30.45 Aligned_cols=58 Identities=19% Similarity=0.335 Sum_probs=39.1
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-------CCC---------ceeEEEeecCCCceEEEecCCcCchH
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-------ATG---------AKHRAYLKNGPKNEIIVSAGALGSPQ 118 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-------~~g---------~~~~v~~~~~a~keVILsAGai~TP~ 118 (404)
...++++++++.+.+|.-++++ ++++|++.. .+| ..+++ ..+.||+|.|..-...
T Consensus 320 ~~~GV~~~~~~~~~~i~~~~~g----~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i-----~~D~Vi~AiG~~p~~~ 390 (449)
T TIGR01316 320 EEEGVKFHFLCQPVEIIGDEEG----NVRAVKFRKMDCQEQIDSGERRFLPCGDAECKL-----EADAVIVAIGNGSNPI 390 (449)
T ss_pred HhCCCEEEeccCcEEEEEcCCC----eEEEEEEEEEEecCcCCCCCeeeeecCCceEEE-----ECCEEEECCCCCCCch
Confidence 4569999999999999754332 788998751 123 22344 4789999999654444
Q ss_pred HHH
Q 015588 119 LLM 121 (404)
Q Consensus 119 LLl 121 (404)
+|.
T Consensus 391 ~l~ 393 (449)
T TIGR01316 391 MAE 393 (449)
T ss_pred hhh
Confidence 443
No 141
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=31.40 E-value=91 Score=31.72 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=39.9
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-------CC---------CceeEEEeecCCCceEEEecCCcCc-hH
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-------AT---------GAKHRAYLKNGPKNEIIVSAGALGS-PQ 118 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-------~~---------g~~~~v~~~~~a~keVILsAGai~T-P~ 118 (404)
..++++++++.+.+|..++++ ++++|++.. .+ |+.+++ ..+.||+|.|..-. ..
T Consensus 332 ~~GV~~~~~~~~~~i~~~~~g----~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i-----~~D~Vi~a~G~~p~~~~ 402 (467)
T TIGR01318 332 EEGVEFLFNVQPVYIECDEDG----RVTGVGLVRTALGEPDADGRRRPVPVAGSEFVL-----PADVVIMAFGFQPHAMP 402 (467)
T ss_pred hcCCEEEecCCcEEEEECCCC----eEEEEEEEEEEecccCCCCCccceecCCceEEE-----ECCEEEECCcCCCCccc
Confidence 468999999999999765433 688888742 11 233445 47899999996543 33
Q ss_pred HHHhhc
Q 015588 119 LLMLSG 124 (404)
Q Consensus 119 LLl~SG 124 (404)
+|..+|
T Consensus 403 ~~~~~g 408 (467)
T TIGR01318 403 WLAGHG 408 (467)
T ss_pred cccccC
Confidence 444444
No 142
>PRK12839 hypothetical protein; Provisional
Probab=31.32 E-value=82 Score=33.06 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=34.1
Q ss_pred CCc-eecCCCeeee-----ccCceEeec---cccCC--CCCCChHHHHHHHHHHHHHHHHh
Q 015588 346 VGK-VVDHDYKVLG-----VDALRVIDG---STFYY--SPGTNPQATVMMLGRYMGVRILS 395 (404)
Q Consensus 346 MG~-VVD~~lrV~G-----v~nLrVvDa---Sv~P~--~~~~np~~t~~aiaer~A~~ii~ 395 (404)
||+ .+|.++||.+ ++|||.+.. |++-. ..+++.....+..+..+++++.+
T Consensus 506 ~GGl~in~~~qVLd~dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~ 566 (572)
T PRK12839 506 FAGLVADGKSRVLRDDDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAG 566 (572)
T ss_pred CCCccCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHh
Confidence 443 4666666665 789999973 55542 13577888888999887776643
No 143
>CHL00051 rps12 ribosomal protein S12
Probab=30.75 E-value=36 Score=27.65 Aligned_cols=23 Identities=9% Similarity=0.262 Sum_probs=17.7
Q ss_pred ceeeecCcccCCcCcCCCCceee
Q 015588 128 ITVVLDQPLVGQGMSDNPMNAIF 150 (404)
Q Consensus 128 I~~~~d~p~VG~nl~DH~~~~~~ 150 (404)
-.+..=.|+-|.|||+|..+.+-
T Consensus 61 k~v~AyIPGeGhnlqehs~VLvr 83 (123)
T CHL00051 61 FEITAYIPGIGHNLQEHSVVLVR 83 (123)
T ss_pred CEEEEEcCCCCccccccCEEEEe
Confidence 45556679999999999876554
No 144
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=30.34 E-value=1e+02 Score=31.30 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=38.1
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHH
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 120 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LL 120 (404)
+.+.+++|++++.|++|.-+++ -..|++.+.+|+..++ ..+.||+|.|..-....|
T Consensus 234 l~~~gi~i~~~~~v~~i~~~~~------~v~v~~~~~~g~~~~i-----~~D~vl~a~G~~p~~~~l 289 (475)
T PRK06327 234 FTKQGLDIHLGVKIGEIKTGGK------GVSVAYTDADGEAQTL-----EVDKLIVSIGRVPNTDGL 289 (475)
T ss_pred HHHcCcEEEeCcEEEEEEEcCC------EEEEEEEeCCCceeEE-----EcCEEEEccCCccCCCCC
Confidence 3456899999999999965432 2245555434554455 478999999977665543
No 145
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=30.23 E-value=1.5e+02 Score=28.85 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=40.7
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
.+...++++.+++.|++|.-+.+ ...|++. +|+ ++ ..+.||+|.|.--.+.++..+|
T Consensus 192 ~l~~~gV~i~~~~~v~~i~~~~~------~~~v~~~--~g~--~i-----~~D~vI~a~G~~p~~~l~~~~g 248 (377)
T PRK04965 192 RLTEMGVHLLLKSQLQGLEKTDS------GIRATLD--SGR--SI-----EVDAVIAAAGLRPNTALARRAG 248 (377)
T ss_pred HHHhCCCEEEECCeEEEEEccCC------EEEEEEc--CCc--EE-----ECCEEEECcCCCcchHHHHHCC
Confidence 33456899999999999875432 2335543 454 34 3689999999888888888887
No 146
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=30.13 E-value=1e+02 Score=31.20 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=38.8
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHH--HHhhc
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL--LMLSG 124 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~L--Ll~SG 124 (404)
+.+.+++|++++.|++|.-++. -..|.+...+|+..++ ..+.||+|.|..-+..+ |..+|
T Consensus 223 l~~~gV~i~~~~~v~~i~~~~~------~~~v~~~~~~g~~~~i-----~~D~vi~a~G~~pn~~~l~l~~~g 284 (466)
T PRK07818 223 YKKLGVKILTGTKVESIDDNGS------KVTVTVSKKDGKAQEL-----EADKVLQAIGFAPRVEGYGLEKTG 284 (466)
T ss_pred HHHCCCEEEECCEEEEEEEeCC------eEEEEEEecCCCeEEE-----EeCEEEECcCcccCCCCCCchhcC
Confidence 3456999999999999864322 2234444224654455 47999999997665554 34444
No 147
>COG4895 Uncharacterized conserved protein [Function unknown]
Probab=30.11 E-value=37 Score=23.26 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=20.4
Q ss_pred hHHHHhhc--CCCceeeecCcccCCc
Q 015588 117 PQLLMLSG--AHNITVVLDQPLVGQG 140 (404)
Q Consensus 117 P~LLl~SG--~~gI~~~~d~p~VG~n 140 (404)
-+||-+|- ++||.|......||+-
T Consensus 34 k~iLT~S~~HPHGIKVrL~dGqvGRv 59 (63)
T COG4895 34 KAILTRSPSHPHGIKVRLTDGQVGRV 59 (63)
T ss_pred HHHHhCCCCCCCceEEEeecCcccce
Confidence 46899998 9999999888889873
No 148
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.78 E-value=1.4e+02 Score=29.83 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=40.5
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecCCc-CchHHHH
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGAL-GSPQLLM 121 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAGai-~TP~LLl 121 (404)
.+++.+++++.|.++.-.+++ + .-+.+... .|+..++. .+.||||.|-= ..|.+|.
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~g----~-~~l~~~~~~~~~~~t~~-----~D~vIlATGY~~~~P~fL~ 347 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGDG----R-YRLTLRHHETGELETVE-----TDAVILATGYRRAVPSFLE 347 (436)
T ss_pred CCCeeeccccceeeeecCCCc----e-EEEEEeeccCCCceEEE-----eeEEEEecccccCCchhhh
Confidence 589999999999999876653 3 44445442 56777763 68999999965 5666654
No 149
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=29.66 E-value=94 Score=32.63 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=33.2
Q ss_pred CCCc-eecCCCeeee-----ccCceEee---ccccCCC--CCCChHHHHHHHHHHHHHHHHhh
Q 015588 345 QVGK-VVDHDYKVLG-----VDALRVID---GSTFYYS--PGTNPQATVMMLGRYMGVRILSE 396 (404)
Q Consensus 345 rMG~-VVD~~lrV~G-----v~nLrVvD---aSv~P~~--~~~np~~t~~aiaer~A~~ii~~ 396 (404)
.||+ .+|.++||.. ++|||.+. ++++... ..++.....+..+..+++++.+.
T Consensus 509 T~GGl~in~~~qVld~dg~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 571 (578)
T PRK12843 509 AATGLVTDASARVLNADGQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKR 571 (578)
T ss_pred cCCCccCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHh
Confidence 3443 5666666665 79999986 3444321 23566777788888777766543
No 150
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=28.29 E-value=98 Score=31.29 Aligned_cols=55 Identities=16% Similarity=-0.001 Sum_probs=35.4
Q ss_pred ccccCCCc-eecCCCeeee-----ccCceEeec---c-ccCC-CCCCChHHHHHHHHHHHHHHHHh
Q 015588 341 HGGCQVGK-VVDHDYKVLG-----VDALRVIDG---S-TFYY-SPGTNPQATVMMLGRYMGVRILS 395 (404)
Q Consensus 341 ~GTcrMG~-VVD~~lrV~G-----v~nLrVvDa---S-v~P~-~~~~np~~t~~aiaer~A~~ii~ 395 (404)
.-.+-||+ .+|.++||.. ++|||.+.. + ++-. -+++|..+-.+..+..+++++.+
T Consensus 394 ~~~~t~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~ 459 (466)
T PRK08274 394 GITFTYLGLKVDEDARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAAR 459 (466)
T ss_pred ceeeecccEEECCCceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHH
Confidence 33445665 5888888864 899999973 3 5542 23456666666677766665544
No 151
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=27.87 E-value=99 Score=32.28 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=35.2
Q ss_pred CCCc-eecCCCeeee-----ccCceEeec---cccCC-CCC-CChHHHHHHHHHHHHHHHHhh
Q 015588 345 QVGK-VVDHDYKVLG-----VDALRVIDG---STFYY-SPG-TNPQATVMMLGRYMGVRILSE 396 (404)
Q Consensus 345 rMG~-VVD~~lrV~G-----v~nLrVvDa---Sv~P~-~~~-~np~~t~~aiaer~A~~ii~~ 396 (404)
.+|+ .+|.++||.. ++|||.+.. +++-. -++ ++.....+..+..+++++.+.
T Consensus 487 T~GGl~in~~~qVld~~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~ 549 (557)
T PRK12844 487 TSGGLLTDEHARVLREDGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGA 549 (557)
T ss_pred ECCCccCCCCceEECCCCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhc
Confidence 3453 5677777766 799999973 45532 223 677888888888877777554
No 152
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.18 E-value=1.1e+02 Score=32.17 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=37.6
Q ss_pred ccCCCce-ecCCCeee--------eccCceEeecccc--CC---CCCCChHHHHHHHHHHHHHHHHh
Q 015588 343 GCQVGKV-VDHDYKVL--------GVDALRVIDGSTF--YY---SPGTNPQATVMMLGRYMGVRILS 395 (404)
Q Consensus 343 TcrMG~V-VD~~lrV~--------Gv~nLrVvDaSv~--P~---~~~~np~~t~~aiaer~A~~ii~ 395 (404)
...||+| ||.++||. .++|||.+.-..- .. -.++|..+-.+..+.++++.+.+
T Consensus 358 h~t~GGi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~ 424 (591)
T PRK07057 358 HYQMGGIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVD 424 (591)
T ss_pred heeCCCeeECCCCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 3447776 99999996 3899999876432 11 13457888888888888877654
No 153
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=26.97 E-value=1.6e+02 Score=28.51 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=23.7
Q ss_pred cCceEeeccccCCCCCCChHHHHHHHHHHHHHHHH
Q 015588 360 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL 394 (404)
Q Consensus 360 ~nLrVvDaSv~P~~~~~np~~t~~aiaer~A~~ii 394 (404)
+||+.+...+.|...+ ..--++.=|+++|+.||
T Consensus 418 ~~l~~aG~~~~~~~~~--~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYPG--GIEGAILSGRRAAEEIL 450 (450)
T ss_dssp TTEEE-SGGGSSSSTT--SHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCCC--cHHHHHHHHHHHHHHhC
Confidence 7999999999988653 33345566788888775
No 154
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=26.33 E-value=2e+02 Score=29.31 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=23.1
Q ss_pred eeeccCceEeeccccCCCCCCChHHHHHHHHHHHHHHHHhh
Q 015588 356 VLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 396 (404)
Q Consensus 356 V~Gv~nLrVvDaSv~P~~~~~np~~t~~aiaer~A~~ii~~ 396 (404)
...++|||.+.+|++|=. +. |. +++=|..+|+.|+++
T Consensus 455 ~t~i~gLyl~G~~~~pG~-Gv-~g--~~~sg~~~a~~il~~ 491 (502)
T TIGR02734 455 DRKIDNLYLVGAGTHPGA-GV-PG--VLGSAKATAKLMLGD 491 (502)
T ss_pred CCCCCCEEEeCCCCCCCC-CH-HH--HHHHHHHHHHHHHhh
Confidence 457899999999998832 11 11 233455556666654
No 155
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=26.28 E-value=1.3e+02 Score=31.51 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=32.6
Q ss_pred eecCCCeeee-----ccCceEee---ccccC-CCCC-CChHHHHHHHHHHHHHHHH
Q 015588 349 VVDHDYKVLG-----VDALRVID---GSTFY-YSPG-TNPQATVMMLGRYMGVRIL 394 (404)
Q Consensus 349 VVD~~lrV~G-----v~nLrVvD---aSv~P-~~~~-~np~~t~~aiaer~A~~ii 394 (404)
.+|.++||.+ ++|||.+. ++++- .-++ ++.....+..+..+++++.
T Consensus 507 ~id~~~qVLd~dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa 562 (564)
T PRK12845 507 RADERARVLREDGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAA 562 (564)
T ss_pred eECCCceEECCCCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHh
Confidence 5677777665 78999997 45554 2333 7788888888988777664
No 156
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=26.28 E-value=1.3e+02 Score=30.28 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=37.4
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchH--HHHhhc
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ--LLMLSG 124 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~--LLl~SG 124 (404)
.+.++++++++.|++|..+++ .++ |+. .+|+..++ ..+.||+|.|..-... +|..+|
T Consensus 222 ~~~gi~i~~~~~v~~i~~~~~-----~v~-v~~--~~g~~~~i-----~~D~vi~a~G~~p~~~~l~~~~~g 280 (461)
T TIGR01350 222 KKKGVKILTNTKVTAVEKNDD-----QVV-YEN--KGGETETL-----TGEKVLVAVGRKPNTEGLGLENLG 280 (461)
T ss_pred HHcCCEEEeCCEEEEEEEeCC-----EEE-EEE--eCCcEEEE-----EeCEEEEecCCcccCCCCCcHhhC
Confidence 345899999999999976543 232 333 24543344 4689999999776666 344444
No 157
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=25.66 E-value=1.7e+02 Score=29.63 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=34.1
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCc
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 114 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai 114 (404)
...+-++++++.|++|.+++++ +++||... +|+. + .+|.||.....+
T Consensus 243 a~~Gg~~~L~~~V~~I~~~~~g----~~~~V~~~--~Ge~--i-----~a~~VV~~~s~~ 289 (443)
T PTZ00363 243 AIYGGTYMLNTPVDEVVFDENG----KVCGVKSE--GGEV--A-----KCKLVICDPSYF 289 (443)
T ss_pred HHcCcEEEcCCeEEEEEEcCCC----eEEEEEEC--CCcE--E-----ECCEEEECcccc
Confidence 3457799999999999998643 68888764 4643 3 367888766654
No 158
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=25.63 E-value=1.8e+02 Score=31.03 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=33.3
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 120 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LL 120 (404)
.+.+ ++++..++.|++|..+++ ..+ |+. .+|. .+ .++.||+|+|+ .+++|+
T Consensus 417 ~a~~-Gv~i~~~~~V~~i~~~~~-----~~~-v~t--~~g~--~~-----~ad~VV~A~G~-~s~~l~ 467 (662)
T PRK01747 417 LAGQ-QLTIHFGHEVARLEREDD-----GWQ-LDF--AGGT--LA-----SAPVVVLANGH-DAARFA 467 (662)
T ss_pred hccc-CcEEEeCCEeeEEEEeCC-----EEE-EEE--CCCc--EE-----ECCEEEECCCC-Cccccc
Confidence 3445 899999999999987643 233 432 2343 22 36899999997 444544
No 159
>PRK08275 putative oxidoreductase; Provisional
Probab=25.38 E-value=1e+02 Score=32.21 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=35.7
Q ss_pred ccccccccCCCc-eecCCCeeeeccCceEeeccccCCCCCCChHHHHHHHHHHHHHHH
Q 015588 337 IWHYHGGCQVGK-VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 393 (404)
Q Consensus 337 ~~H~~GTcrMG~-VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~t~~aiaer~A~~i 393 (404)
..|.+|+..||+ .||.+++. .++|||.+.-... .+.|-.+..+.-+.++++.+
T Consensus 347 ~~~~~g~~~~Ggi~~d~~~~t-~i~gl~a~Ge~~~---~~~~~~~~~~~~G~~a~~~~ 400 (554)
T PRK08275 347 EIGFCSGHSASGVWVNEKAET-TVPGLYAAGDMAS---VPHNYMLGAFTYGWFAGENA 400 (554)
T ss_pred CceeecccccCcEEECCCCcc-CCCCEEECcccCC---chhHHHHHHHHHHHHHHHHH
Confidence 456677788987 68999996 7999998865432 12455555555666655544
No 160
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=25.36 E-value=1.5e+02 Score=24.12 Aligned_cols=85 Identities=8% Similarity=0.054 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHHccccccccccc-cCchhhhhccccCCCCCCCCCCCCChHHHHHHHHhhcccccccccccCCCc
Q 015588 270 EDLQRCVQGISTIEKIIESKSFSKFKYE-SMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK 348 (404)
Q Consensus 270 ~D~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~i~~~~~~~~H~~GTcrMG~ 348 (404)
.-.+.+.++++.++.+++..++.-.... .....++....+.. |.-..+...+++|+-. .-..-+|+.|.=..
T Consensus 20 ~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~~~S-----~~I~inG~piE~~l~~--~v~~s~C~~c~~~~ 92 (120)
T PF10865_consen 20 DTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQPLES-----PTIRINGRPIEDLLGA--EVGESPCESCGCSC 92 (120)
T ss_pred hHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcccCC-----CeeeECCEehhHhhCC--ccccCccccccccc
Confidence 4567888999999999988776533311 11111111000000 1111234567777722 22233454554444
Q ss_pred eecCCCeeeeccC
Q 015588 349 VVDHDYKVLGVDA 361 (404)
Q Consensus 349 VVD~~lrV~Gv~n 361 (404)
.=|.+||++.++|
T Consensus 93 g~~~~CRt~~~~g 105 (120)
T PF10865_consen 93 GGDVDCRTLEYEG 105 (120)
T ss_pred CCCccceeEEECC
Confidence 4677899987776
No 161
>cd03368 Ribosomal_S12 S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions. S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. Antibiotics such as streptomycin bind S12 and cause the ribosome to misread the genetic code.
Probab=24.91 E-value=52 Score=26.11 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=16.7
Q ss_pred eeeecCcccCCcCcCCCCceee
Q 015588 129 TVVLDQPLVGQGMSDNPMNAIF 150 (404)
Q Consensus 129 ~~~~d~p~VG~nl~DH~~~~~~ 150 (404)
.+..=.|+-|.|||+|..+.+.
T Consensus 60 ~v~AyIPG~Ghnlqehs~VLvr 81 (108)
T cd03368 60 EVTAYIPGEGHNLQEHSVVLVR 81 (108)
T ss_pred EEEEEcCCCCCCccccCEEEEe
Confidence 4445579999999999876554
No 162
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=24.70 E-value=1.2e+02 Score=31.90 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=32.3
Q ss_pred CCc-eecCCCeeee-----ccCceEeec---cccCC--CCCCChHHHHHHHHHHHHHHHHh
Q 015588 346 VGK-VVDHDYKVLG-----VDALRVIDG---STFYY--SPGTNPQATVMMLGRYMGVRILS 395 (404)
Q Consensus 346 MG~-VVD~~lrV~G-----v~nLrVvDa---Sv~P~--~~~~np~~t~~aiaer~A~~ii~ 395 (404)
||+ .+|.++||.+ ++|||.+.. +++-. ..+++.....+..+..+++++.+
T Consensus 509 ~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~ 569 (581)
T PRK06134 509 FAGLKTDADARVLDQAGQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAG 569 (581)
T ss_pred CCCccCCCCCceECCCCCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhh
Confidence 443 4555555555 789999983 44421 12467777888888877776644
No 163
>PRK10015 oxidoreductase; Provisional
Probab=24.42 E-value=1.5e+02 Score=29.68 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=32.4
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCC
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 113 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGa 113 (404)
...+.+++.+++|+.|..+++ ++++|.. ++ .++ .++-||+|.|+
T Consensus 119 ~~~Gv~i~~~~~V~~i~~~~~-----~v~~v~~---~~--~~i-----~A~~VI~AdG~ 162 (429)
T PRK10015 119 EQAGAQFIPGVRVDALVREGN-----KVTGVQA---GD--DIL-----EANVVILADGV 162 (429)
T ss_pred HHcCCEEECCcEEEEEEEeCC-----EEEEEEe---CC--eEE-----ECCEEEEccCc
Confidence 346899999999999987643 5777753 22 234 36899999996
No 164
>TIGR00981 rpsL_bact ribosomal protein S12, bacterial/organelle. This model recognizes ribosomal protein S12 of Bacteria, mitochondria, and chloroplasts. The homologous ribosomal proteins of Archaea and Eukarya, termed S23 in Eukarya and S12 or S23 in Archaea, score below the trusted cutoff.
Probab=23.88 E-value=57 Score=26.53 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=17.2
Q ss_pred ceeeecCcccCCcCcCCCCceee
Q 015588 128 ITVVLDQPLVGQGMSDNPMNAIF 150 (404)
Q Consensus 128 I~~~~d~p~VG~nl~DH~~~~~~ 150 (404)
-.+..=.|+-|.|||+|..+.+.
T Consensus 61 k~v~AyIPG~Ghnlqehs~VLvr 83 (124)
T TIGR00981 61 FEVTAYIPGEGHNLQEHSVVLIR 83 (124)
T ss_pred CEEEEEcCCCCCCccccCEEEEe
Confidence 34445579999999999876554
No 165
>PRK05163 rpsL 30S ribosomal protein S12; Validated
Probab=23.74 E-value=55 Score=26.61 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=17.1
Q ss_pred ceeeecCcccCCcCcCCCCceee
Q 015588 128 ITVVLDQPLVGQGMSDNPMNAIF 150 (404)
Q Consensus 128 I~~~~d~p~VG~nl~DH~~~~~~ 150 (404)
-.+..=.|+-|.|||+|..+.+.
T Consensus 61 k~v~AyIPGeGhnlqehs~VLvr 83 (124)
T PRK05163 61 FEVTAYIPGEGHNLQEHSVVLIR 83 (124)
T ss_pred CEEEEEcCCCCCCccccCEEEEe
Confidence 34445579999999999876554
No 166
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=23.43 E-value=1.8e+02 Score=28.22 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=27.9
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeecCCCceEEEecC
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAG 112 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~a~keVILsAG 112 (404)
.+..++|+.++.|+.+..++++ -.-+.+.+. .|+..++ ..+.||||.|
T Consensus 290 g~~~~~l~~~~~v~~~~~~~~~-----~~~l~~~~~~~~~~~~~-----~~D~VilATG 338 (341)
T PF13434_consen 290 GRGRLRLLPNTEVTSAEQDGDG-----GVRLTLRHRQTGEEETL-----EVDAVILATG 338 (341)
T ss_dssp T---SEEETTEEEEEEEEES-S-----SEEEEEEETTT--EEEE-----EESEEEE---
T ss_pred CCCCeEEeCCCEEEEEEECCCC-----EEEEEEEECCCCCeEEE-----ecCEEEEcCC
Confidence 4567999999999999988642 233445542 3555555 4699999998
No 167
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=23.31 E-value=1.6e+02 Score=29.09 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=33.3
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCC
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 113 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGa 113 (404)
.+...+.+++++++|+.++.++++ .++++. .. + .+++ +|-||.|-|+
T Consensus 104 ~A~~aGae~~~~~~~~~~~~~~~~----~~~~~~-~~--~--~e~~-----a~~vI~AdG~ 150 (396)
T COG0644 104 RAEEAGAELYPGTRVTGVIREDDG----VVVGVR-AG--D--DEVR-----AKVVIDADGV 150 (396)
T ss_pred HHHHcCCEEEeceEEEEEEEeCCc----EEEEEE-cC--C--EEEE-----cCEEEECCCc
Confidence 344579999999999999998764 344433 21 2 4553 6899999985
No 168
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=22.89 E-value=1.5e+02 Score=31.58 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=36.5
Q ss_pred CCce-ecCCCeee---------eccCceEeecccc--CCC---CCCChHHHHHHHHHHHHHHHHh
Q 015588 346 VGKV-VDHDYKVL---------GVDALRVIDGSTF--YYS---PGTNPQATVMMLGRYMGVRILS 395 (404)
Q Consensus 346 MG~V-VD~~lrV~---------Gv~nLrVvDaSv~--P~~---~~~np~~t~~aiaer~A~~ii~ 395 (404)
||++ ||.+++|. .++|||.+.--.- ... .++|..+..+..+.++++.+.+
T Consensus 400 ~GGi~vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~ 464 (635)
T PLN00128 400 MGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAE 464 (635)
T ss_pred cCCcccCCCCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 7775 99999984 4999999976432 111 3467888888889988877654
No 169
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=22.87 E-value=2e+02 Score=28.08 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=42.6
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEE--eC----CCce--------eEEEeecCCCceEEEecCCcCchH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFR--DA----TGAK--------HRAYLKNGPKNEIIVSAGALGSPQ 118 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~--~~----~g~~--------~~v~~~~~a~keVILsAGai~TP~ 118 (404)
...++.++....++|.++...++ +++||.-. .+ .|+. +++ .+..||++.|.|+--+
T Consensus 162 ~~~~~~v~f~~RHrV~~l~~t~g-----rvtGv~GdVLeps~v~RG~~SSR~~~GdFef-----~A~aviv~SGGIGGnh 231 (552)
T COG3573 162 AQRRGRVTFRFRHRVDGLTTTGG-----RVTGVRGDVLEPSDVERGQPSSREVVGDFEF-----SASAVIVASGGIGGNH 231 (552)
T ss_pred HHhCCceEEEeeeeccceEeeCC-----eEeeecccccCCCccccCCCccceeecceEE-----eeeeEEEecCCcCCCH
Confidence 34577899999999999998764 79998631 11 1221 333 3678999999987666
Q ss_pred HHHhhc
Q 015588 119 LLMLSG 124 (404)
Q Consensus 119 LLl~SG 124 (404)
=|.+-.
T Consensus 232 elVRrn 237 (552)
T COG3573 232 ELVRRN 237 (552)
T ss_pred HHHHhc
Confidence 665543
No 170
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=22.86 E-value=1.9e+02 Score=29.17 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=38.1
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeC---------------CCceeEEEeecCCCceEEEecCCcCchHH
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA---------------TGAKHRAYLKNGPKNEIIVSAGALGSPQL 119 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~---------------~g~~~~v~~~~~a~keVILsAGai~TP~L 119 (404)
...++++++++.+.+|.-+++ ..+||++... .|...++ ..+.||+|.|..-...|
T Consensus 322 ~~~GV~i~~~~~v~~i~~~~~-----~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i-----~~D~vi~a~G~~p~~~l 391 (457)
T PRK11749 322 KEEGVEFEWLAAPVEILGDEG-----RVTGVEFVRMELGEPDASGRRRVPIEGSEFTL-----PADLVIKAIGQTPNPLI 391 (457)
T ss_pred HHCCCEEEecCCcEEEEecCC-----ceEEEEEEEEEecCcCCCCCcccCCCCceEEE-----ECCEEEECccCCCCchh
Confidence 346899999999999864432 3577876421 2333445 47899999997655544
Q ss_pred HH
Q 015588 120 LM 121 (404)
Q Consensus 120 Ll 121 (404)
+.
T Consensus 392 ~~ 393 (457)
T PRK11749 392 LS 393 (457)
T ss_pred hc
Confidence 43
No 171
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=22.33 E-value=1.8e+02 Score=30.67 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=33.0
Q ss_pred cCCCc-eecCCCeeee-----ccCceEee---ccccCCC-C-CCChHHHHHHHHHHHHHHHHhh
Q 015588 344 CQVGK-VVDHDYKVLG-----VDALRVID---GSTFYYS-P-GTNPQATVMMLGRYMGVRILSE 396 (404)
Q Consensus 344 crMG~-VVD~~lrV~G-----v~nLrVvD---aSv~P~~-~-~~np~~t~~aiaer~A~~ii~~ 396 (404)
+-||+ ++|.++||.+ ++|||.+. ++++-.. + +++.....+..+..+++++.+.
T Consensus 506 ~T~GGl~in~~~qVLd~~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~ 569 (584)
T PRK12835 506 GTSGGLRTDEHARVLREDDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAV 569 (584)
T ss_pred ccCcCccCCCCceEECCCCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHh
Confidence 34553 4566666555 68999998 4555422 2 2566677777787777766553
No 172
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=22.16 E-value=93 Score=29.38 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=37.4
Q ss_pred CCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHh
Q 015588 57 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 122 (404)
Q Consensus 57 ~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~ 122 (404)
.+|+|+++++|++|-..++ ---+.. .+|..+. ..+.|+|+.=+=+++.||--
T Consensus 116 tdL~V~~~~rVt~v~~~~~------~W~l~~--~~g~~~~------~~d~vvla~PAPQ~~~LLt~ 167 (331)
T COG3380 116 TDLTVVLETRVTEVARTDN------DWTLHT--DDGTRHT------QFDDVVLAIPAPQTATLLTT 167 (331)
T ss_pred ccchhhhhhhhhhheecCC------eeEEEe--cCCCccc------ccceEEEecCCCcchhhcCc
Confidence 5899999999999987643 222332 2344433 46899999999888888853
No 173
>TIGR03833 conserved hypothetical protein. A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown.
Probab=22.09 E-value=49 Score=23.32 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=18.5
Q ss_pred HHHHhhc--CCCceeeecCcccCC
Q 015588 118 QLLMLSG--AHNITVVLDQPLVGQ 139 (404)
Q Consensus 118 ~LLl~SG--~~gI~~~~d~p~VG~ 139 (404)
.||-+|. ++||.|......||+
T Consensus 34 diLT~s~~Hp~GIKVrL~dG~VGR 57 (62)
T TIGR03833 34 DILTNSPTHPHGIKVRLEDGQVGR 57 (62)
T ss_pred hhhcCCCCCCCceEEEEecCCeee
Confidence 5788887 889999988888886
No 174
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=22.05 E-value=1.7e+02 Score=28.48 Aligned_cols=56 Identities=21% Similarity=0.193 Sum_probs=38.3
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhh
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 123 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~S 123 (404)
..-+..++.+..|.-+.+.+.. -.+|.+...+|..+ -+|.+|+++|| -+.+||-.|
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~-----~~~v~V~Tt~gs~Y-------~akkiI~t~Ga-Wi~klL~~~ 219 (399)
T KOG2820|consen 164 RELGVIFRDGEKVKFIKFVDEE-----GNHVSVQTTDGSIY-------HAKKIIFTVGA-WINKLLPTS 219 (399)
T ss_pred HHcCeEEecCcceeeEeeccCC-----CceeEEEeccCCee-------ecceEEEEecH-HHHhhcCcc
Confidence 3457889999999998887643 33344444456543 37999999998 456666554
No 175
>PRK11445 putative oxidoreductase; Provisional
Probab=21.99 E-value=2.7e+02 Score=26.90 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=34.7
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchH
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~ 118 (404)
..+.+++.++.|+.+..+++ -..|.+.. +|+..++ .++-||.|.|+-...+
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~------~~~v~~~~-~g~~~~i-----~a~~vV~AdG~~S~vr 160 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDD------GYHVIFRA-DGWEQHI-----TARYLVGADGANSMVR 160 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCC------EEEEEEec-CCcEEEE-----EeCEEEECCCCCcHHh
Confidence 46799999999999876543 23355533 4654455 3689999999754433
No 176
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=21.95 E-value=1.6e+02 Score=31.34 Aligned_cols=52 Identities=17% Similarity=0.288 Sum_probs=36.3
Q ss_pred CCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-------CCC---------ceeEEEeecCCCceEEEecCCcCc
Q 015588 56 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-------ATG---------AKHRAYLKNGPKNEIIVSAGALGS 116 (404)
Q Consensus 56 r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-------~~g---------~~~~v~~~~~a~keVILsAGai~T 116 (404)
..++++++++.+.+|+.++++ +++||++.. .+| +.+++ ..+.||+|.|....
T Consensus 518 ~~Gv~~~~~~~~~~i~~~~~g----~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i-----~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 518 EEGANFEFNVQPVALELNEQG----HVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVM-----PADAVIMAFGFNPH 585 (654)
T ss_pred HcCCeEEeccCcEEEEECCCC----eEEEEEEEEEEecCcCCCCCCcceeCCCceEEE-----ECCEEEECccCCCC
Confidence 457999999999998765443 799998742 122 33344 57999999996543
No 177
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=21.51 E-value=2e+02 Score=31.81 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=43.3
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 124 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG 124 (404)
.....+++|++++.|++|.-++.. ....|.+. +|+. + ..+.||+|.|.--+..|+..+|
T Consensus 196 ~L~~~GV~v~~~~~v~~I~~~~~~----~~~~v~~~--dG~~--i-----~~D~Vv~A~G~rPn~~L~~~~G 254 (847)
T PRK14989 196 KIESMGVRVHTSKNTLEIVQEGVE----ARKTMRFA--DGSE--L-----EVDFIVFSTGIRPQDKLATQCG 254 (847)
T ss_pred HHHHCCCEEEcCCeEEEEEecCCC----ceEEEEEC--CCCE--E-----EcCEEEECCCcccCchHHhhcC
Confidence 334568999999999999754322 45667664 4543 3 4699999999888888877777
No 178
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=21.42 E-value=83 Score=25.99 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=22.6
Q ss_pred eCCCCCChhhHHHHHHHHHHHHHHHcc
Q 015588 262 TFNYFKEPEDLQRCVQGISTIEKIIES 288 (404)
Q Consensus 262 ~~~~~~~~~D~~~~~~~~~~~~~i~~~ 288 (404)
++.|...|.|++.+.+.|+.+.+++.+
T Consensus 102 ~~~~~y~~~~~~~~~~~m~~a~~~~~~ 128 (130)
T cd02960 102 NRLYTYEPADIPLLIENMKKALKLLKT 128 (130)
T ss_pred CccceeCcCcHHHHHHHHHHHHHHHhc
Confidence 344555799999999999999999876
No 179
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=21.40 E-value=1.9e+02 Score=29.24 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=35.1
Q ss_pred hcCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchH
Q 015588 53 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 118 (404)
Q Consensus 53 ~~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~ 118 (404)
.+...++++++++.|++|.-+++ ...|++.. ++...++ ..+.||+|.|..-...
T Consensus 216 ~l~~~gV~i~~~~~V~~i~~~~~------~~~v~~~~-~~~~~~i-----~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 216 ALAEEGIEVVTSAQVKAVSVRGG------GKIITVEK-PGGQGEV-----EADELLVATGRRPNTD 269 (463)
T ss_pred HHHHcCCEEEcCcEEEEEEEcCC------EEEEEEEe-CCCceEE-----EeCEEEEeECCCcCCC
Confidence 33456899999999999865432 33455543 2223445 4689999999655544
No 180
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.33 E-value=1.4e+02 Score=31.33 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=35.4
Q ss_pred CCCce-ecCCCeee---------eccCceEeecccc--CC---CCCCChHHHHHHHHHHHHHHHHh
Q 015588 345 QVGKV-VDHDYKVL---------GVDALRVIDGSTF--YY---SPGTNPQATVMMLGRYMGVRILS 395 (404)
Q Consensus 345 rMG~V-VD~~lrV~---------Gv~nLrVvDaSv~--P~---~~~~np~~t~~aiaer~A~~ii~ 395 (404)
-||+| ||.+++|. -++|||.+.--.- +. -.++|..+-.+..+.++++.+.+
T Consensus 356 t~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 421 (588)
T PRK08958 356 MMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQE 421 (588)
T ss_pred eCCCeeECCCceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 46775 89999984 4999999875322 11 23467778888888887776643
No 181
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=21.32 E-value=2.4e+02 Score=27.25 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=29.6
Q ss_pred CCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCC
Q 015588 57 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 113 (404)
Q Consensus 57 ~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGa 113 (404)
+|++++.++.|+.|..+++ . +.|.+ .+|+ ++ .++.||.|.|+
T Consensus 119 ~gv~~~~~~~v~~i~~~~~-----~-~~v~~--~~g~--~~-----~ad~vV~AdG~ 160 (382)
T TIGR01984 119 TNIQLYCPARYKEIIRNQD-----Y-VRVTL--DNGQ--QL-----RAKLLIAADGA 160 (382)
T ss_pred CCcEEEcCCeEEEEEEcCC-----e-EEEEE--CCCC--EE-----EeeEEEEecCC
Confidence 6999999999999976543 1 23444 2454 33 36899999995
No 182
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=21.07 E-value=54 Score=15.59 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=5.9
Q ss_pred cccCCCcee
Q 015588 342 GGCQVGKVV 350 (404)
Q Consensus 342 GTcrMG~VV 350 (404)
||=.||+++
T Consensus 3 gTPTMGGi~ 11 (13)
T PF10555_consen 3 GTPTMGGIV 11 (13)
T ss_pred CCccceeEE
Confidence 666677654
No 183
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.06 E-value=1.7e+02 Score=30.72 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=35.0
Q ss_pred cCCCce-ecCCCeee-----eccCceEeecccc--CC---CCCCChHHHHHHHHHHHHHHHH
Q 015588 344 CQVGKV-VDHDYKVL-----GVDALRVIDGSTF--YY---SPGTNPQATVMMLGRYMGVRIL 394 (404)
Q Consensus 344 crMG~V-VD~~lrV~-----Gv~nLrVvDaSv~--P~---~~~~np~~t~~aiaer~A~~ii 394 (404)
.-||+| +|.+++|- .++|||.+.--.- .. -.++|..+..+..+.++++.+.
T Consensus 354 ~t~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 415 (583)
T PRK08205 354 YAMGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAA 415 (583)
T ss_pred EECCCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHH
Confidence 357776 89999984 6999999875332 11 1345677777777777776554
No 184
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.01 E-value=1.6e+02 Score=30.89 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=35.2
Q ss_pred CCce-ecCCCeee---------eccCceEeecccc--CC---CCCCChHHHHHHHHHHHHHHHHh
Q 015588 346 VGKV-VDHDYKVL---------GVDALRVIDGSTF--YY---SPGTNPQATVMMLGRYMGVRILS 395 (404)
Q Consensus 346 MG~V-VD~~lrV~---------Gv~nLrVvDaSv~--P~---~~~~np~~t~~aiaer~A~~ii~ 395 (404)
||++ ||.+++|. .++|||-+.--.- +. -.++|..+-.+..+.++++.+.+
T Consensus 339 ~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 403 (570)
T PRK05675 339 MGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEK 403 (570)
T ss_pred CCCcccCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHH
Confidence 6664 88888883 4999999865321 11 23578888888889888876643
No 185
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=20.95 E-value=2.3e+02 Score=25.99 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=31.6
Q ss_pred cCCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCc
Q 015588 54 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 114 (404)
Q Consensus 54 ~~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai 114 (404)
+.+.+.+++.++.|+++..+++ .+ .|.+.+ + ..++ .++-||+|.|.-
T Consensus 101 ~~~~gv~~~~~~~v~~~~~~~~-----~~-~~~~~~--~-~~~~-----~a~~vv~a~G~~ 147 (295)
T TIGR02032 101 AQEAGAELRLGTTVLDVEIHDD-----RV-VVIVRG--G-EGTV-----TAKIVIGADGSR 147 (295)
T ss_pred HHHcCCEEEeCcEEeeEEEeCC-----EE-EEEEcC--c-cEEE-----EeCEEEECCCcc
Confidence 3456899999999999988754 22 233322 2 2334 368999999964
No 186
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=20.21 E-value=2e+02 Score=30.14 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=32.6
Q ss_pred eecCCCeeee-----ccCceEee---ccccCCC-C-CCChHHHHHHHHHHHHHHHHhhh
Q 015588 349 VVDHDYKVLG-----VDALRVID---GSTFYYS-P-GTNPQATVMMLGRYMGVRILSER 397 (404)
Q Consensus 349 VVD~~lrV~G-----v~nLrVvD---aSv~P~~-~-~~np~~t~~aiaer~A~~ii~~~ 397 (404)
.+|.++||.. ++|||.+. ++++-.. + .++.....+..+..+++++.++.
T Consensus 509 ~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 567 (574)
T PRK12842 509 RTDVTGEVLDADGTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVA 567 (574)
T ss_pred CCCCCceEECCCCCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhh
Confidence 3555555554 68999998 3454321 2 37778888888988887776553
No 187
>PRK08244 hypothetical protein; Provisional
Probab=20.14 E-value=2.6e+02 Score=28.49 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=33.5
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcC
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 115 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~ 115 (404)
...+.+|..++.|+++..+++ .+ .|.+.+.+| ..++ .++-||.|.|+-.
T Consensus 111 ~~~gv~v~~~~~v~~i~~~~~-----~v-~v~~~~~~g-~~~i-----~a~~vVgADG~~S 159 (493)
T PRK08244 111 RSLGVEIFRGAEVLAVRQDGD-----GV-EVVVRGPDG-LRTL-----TSSYVVGADGAGS 159 (493)
T ss_pred HHcCCeEEeCCEEEEEEEcCC-----eE-EEEEEeCCc-cEEE-----EeCEEEECCCCCh
Confidence 345899999999999976653 23 355554345 3345 3689999999843
No 188
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=20.06 E-value=2.7e+02 Score=31.59 Aligned_cols=58 Identities=14% Similarity=0.300 Sum_probs=40.6
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEe-------CCC--------ceeEEEeecCCCceEEEecCCcCchHH
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-------ATG--------AKHRAYLKNGPKNEIIVSAGALGSPQL 119 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~-------~~g--------~~~~v~~~~~a~keVILsAGai~TP~L 119 (404)
...++++++++.+.+|..++++ +++||++.. .+| +.+++ ..+.||+|.|..-.+.+
T Consensus 620 ~eeGI~~~~~~~p~~i~~~~~G----~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i-----~~D~Vi~AiG~~p~~~~ 690 (1006)
T PRK12775 620 KEEGIDFFFLHSPVEIYVDAEG----SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDL-----ECDTVIYALGTKANPII 690 (1006)
T ss_pred HhCCCEEEecCCcEEEEeCCCC----eEEEEEEEEEEecccCCCCCccccCCCceEEE-----EcCEEEECCCcCCChhh
Confidence 4568999999999999765443 799998742 112 33344 47899999997766555
Q ss_pred HH
Q 015588 120 LM 121 (404)
Q Consensus 120 Ll 121 (404)
+.
T Consensus 691 ~~ 692 (1006)
T PRK12775 691 TQ 692 (1006)
T ss_pred hh
Confidence 44
No 189
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=20.00 E-value=2e+02 Score=28.87 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=31.8
Q ss_pred CCCCeEEecCcEEEEEEEecCCCCCCeEEEEEEEeCC-CceeEEEeecCCCceEEEecCCc
Q 015588 55 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDAT-GAKHRAYLKNGPKNEIIVSAGAL 114 (404)
Q Consensus 55 ~r~nl~v~~~a~V~rv~~~~~~~~~~~a~GV~~~~~~-g~~~~v~~~~~a~keVILsAGai 114 (404)
.+.|++++.+++|++|..+.+ .|.+.+.. ++..++ ..+.+|||.|+-
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~~--------~v~~~~~~~~~~~~~-----~yd~lviAtGs~ 116 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDERQ--------TVTVLNRKTNEQFEE-----SYDKLILSPGAS 116 (438)
T ss_pred HhCCCEEEeCCEEEEEECCCC--------EEEEEECCCCcEEee-----ecCEEEECCCCC
Confidence 456899999999999865532 35554422 333333 368999999974
Done!