BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015590
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 17/96 (17%)
Query: 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDE 223
+ F++ ++V + E +T+ A+L V D + E AF ++ +
Sbjct: 88 RGFDIFKQMIVDKVVPNE--ATFTNGARLAVAKD---------------DPEMAFDMVKQ 130
Query: 224 FPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERM 259
+P +R+Y + G C KG+ ++A+ + M
Sbjct: 131 MKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Query: 171 NLLVSAKLYGEIQ--GIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQN 228
++L + +LY E + G+ S V + C L N L F + +
Sbjct: 41 DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK 100
Query: 229 CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGM 288
PN T++ K + E AF ++++M++ GI ++ + G ++G ++
Sbjct: 101 VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160
Query: 289 KLLERM 294
++ M
Sbjct: 161 EVDAHM 166
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 183 QGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG 242
+ +T+ A+L V D + E AF + + +P +R+Y + G
Sbjct: 105 EATFTNGARLAVAKD---------------DPEXAFDXVKQXKAFGIQPRLRSYGPALFG 149
Query: 243 LCEKGNVEEAF 253
C KG+ ++A+
Sbjct: 150 FCRKGDADKAY 160
>pdb|3C85|A Chain A, Crystal Structure Of Trka Domain Of Putative
Glutathione-regulated Potassium-efflux Kefb From Vibrio
Parahaemolyticus
pdb|3C85|B Chain B, Crystal Structure Of Trka Domain Of Putative
Glutathione-regulated Potassium-efflux Kefb From Vibrio
Parahaemolyticus
pdb|3C85|C Chain C, Crystal Structure Of Trka Domain Of Putative
Glutathione-regulated Potassium-efflux Kefb From Vibrio
Parahaemolyticus
pdb|3C85|D Chain D, Crystal Structure Of Trka Domain Of Putative
Glutathione-regulated Potassium-efflux Kefb From Vibrio
Parahaemolyticus
Length = 183
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 273 ILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDK------KRFPEAKELV 326
+L++ QG + ++ L+R KG A Y + L GLL+ + EA
Sbjct: 109 VLLAXPHHQGN-QTALEQLQRRNYKGQIAAIAEYPDQLEGLLESGVDAAFNIYSEAGSGF 167
Query: 327 GRMICERMSPSFVSYK 342
R +C+++ P F S K
Sbjct: 168 ARHVCKQLEPQFTSIK 183
>pdb|3TY1|A Chain A, Crystal Structure Of A Hypothetical Aldose 1-Epimerase
(Kpn_04629) From Klebsiella Pneumoniae Subsp. Pneumoniae
Mgh 78578 At 1.90 A Resolution
pdb|3TY1|B Chain B, Crystal Structure Of A Hypothetical Aldose 1-Epimerase
(Kpn_04629) From Klebsiella Pneumoniae Subsp. Pneumoniae
Mgh 78578 At 1.90 A Resolution
pdb|3TY1|C Chain C, Crystal Structure Of A Hypothetical Aldose 1-Epimerase
(Kpn_04629) From Klebsiella Pneumoniae Subsp. Pneumoniae
Mgh 78578 At 1.90 A Resolution
Length = 384
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 12 RQSIIQSLSSASTITRKRTFALASPSASHQDSDHHAYKLNHKDWLSPTEVLKIFSNLRDP 71
+++ +Q+L+ + +F+L +H D H + H ++ +P +L+ + P
Sbjct: 171 KKADLQTLTELRYVPGSNSFSLHDVLTNHADYPHDYQIIYHSNFGTP--ILEEGARFLAP 228
Query: 72 ISVISVLNQYSK 83
IS IS N Y+K
Sbjct: 229 ISSISPFNDYAK 240
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 226 KQNCEPNVRTYS--TLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGK 283
+ N PN+ T + T +H +G+VE LLE+ S+ + ++ K GK
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA--KYGK 158
Query: 284 VEEGMKLLERMKGKGCYPNSA 304
V LLER +PN+A
Sbjct: 159 VRVAELLLER----DAHPNAA 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,524,474
Number of Sequences: 62578
Number of extensions: 471595
Number of successful extensions: 1157
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1143
Number of HSP's gapped (non-prelim): 19
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)