Query 015590
Match_columns 404
No_of_seqs 569 out of 2724
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 07:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 8.6E-60 1.9E-64 463.4 42.2 388 11-401 393-782 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.5E-57 1.2E-61 443.7 42.2 390 7-399 456-873 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 5.5E-56 1.2E-60 433.0 36.9 379 6-401 141-556 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 2.2E-55 4.8E-60 438.4 34.9 383 6-400 104-616 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 5.8E-55 1.3E-59 435.4 37.4 381 6-399 205-651 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-52 2.6E-57 409.5 32.2 337 51-401 83-454 (697)
7 PRK11788 tetratricopeptide rep 99.9 2.1E-22 4.5E-27 184.9 34.1 303 63-374 43-354 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.2E-21 2.6E-26 199.1 40.3 334 53-400 565-898 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 8.3E-21 1.8E-25 192.9 40.5 240 141-388 580-819 (899)
10 PRK11788 tetratricopeptide rep 99.9 9.5E-21 2.1E-25 173.9 34.3 294 97-399 41-344 (389)
11 PRK15174 Vi polysaccharide exp 99.9 1.7E-17 3.6E-22 160.3 38.2 326 60-398 47-377 (656)
12 PRK15174 Vi polysaccharide exp 99.8 3.4E-17 7.4E-22 158.1 38.4 319 37-367 55-381 (656)
13 TIGR00990 3a0801s09 mitochondr 99.8 4.9E-16 1.1E-20 150.4 39.3 255 142-402 308-571 (615)
14 TIGR00990 3a0801s09 mitochondr 99.8 3.3E-15 7.1E-20 144.7 39.4 297 60-367 132-496 (615)
15 PRK11447 cellulose synthase su 99.8 2E-15 4.4E-20 155.6 38.1 335 54-397 302-735 (1157)
16 PRK11447 cellulose synthase su 99.8 9.8E-15 2.1E-19 150.6 39.6 330 62-401 276-699 (1157)
17 KOG4626 O-linked N-acetylgluco 99.8 7.9E-16 1.7E-20 137.5 25.0 325 55-391 116-508 (966)
18 PRK10049 pgaA outer membrane p 99.8 3.4E-14 7.4E-19 140.3 38.5 332 58-401 52-455 (765)
19 KOG4626 O-linked N-acetylgluco 99.7 1.4E-15 2.9E-20 136.1 24.1 294 62-372 89-420 (966)
20 PRK14574 hmsH outer membrane p 99.7 3.8E-13 8.2E-18 131.0 39.5 192 205-399 299-510 (822)
21 COG2956 Predicted N-acetylgluc 99.7 8.8E-14 1.9E-18 115.3 29.0 291 68-367 48-347 (389)
22 PRK10049 pgaA outer membrane p 99.7 4.3E-13 9.2E-18 132.6 39.7 331 59-401 19-421 (765)
23 PF13429 TPR_15: Tetratricopep 99.7 4.3E-16 9.3E-21 135.9 12.7 262 96-365 13-275 (280)
24 PRK10747 putative protoheme IX 99.7 9.3E-13 2E-17 120.3 33.9 284 68-366 97-389 (398)
25 KOG4422 Uncharacterized conser 99.7 3.6E-13 7.9E-18 115.7 28.5 324 55-385 116-480 (625)
26 PRK10747 putative protoheme IX 99.7 8.1E-13 1.8E-17 120.7 31.5 282 103-398 96-386 (398)
27 KOG4422 Uncharacterized conser 99.7 1.8E-12 3.8E-17 111.6 30.8 341 50-399 202-587 (625)
28 PF13429 TPR_15: Tetratricopep 99.6 1.1E-15 2.5E-20 133.3 11.5 262 61-331 14-276 (280)
29 TIGR00540 hemY_coli hemY prote 99.6 1.1E-12 2.3E-17 120.6 30.1 287 68-365 97-397 (409)
30 TIGR00540 hemY_coli hemY prote 99.6 2.9E-12 6.2E-17 117.7 32.6 288 102-399 95-396 (409)
31 PRK09782 bacteriophage N4 rece 99.6 3.7E-12 8.1E-17 126.7 35.5 296 65-372 386-709 (987)
32 PRK09782 bacteriophage N4 rece 99.6 8.4E-12 1.8E-16 124.2 35.2 262 90-365 476-738 (987)
33 PRK14574 hmsH outer membrane p 99.6 9.1E-12 2E-16 121.5 34.7 156 60-223 73-228 (822)
34 KOG1126 DNA-binding cell divis 99.6 8.4E-13 1.8E-17 119.6 24.3 288 70-372 334-623 (638)
35 COG2956 Predicted N-acetylgluc 99.6 3.5E-11 7.6E-16 100.1 29.0 273 103-387 47-329 (389)
36 KOG2076 RNA polymerase III tra 99.5 4.1E-11 8.9E-16 112.3 31.7 326 64-398 149-508 (895)
37 KOG1155 Anaphase-promoting com 99.5 9.5E-11 2.1E-15 102.1 29.1 308 64-383 236-550 (559)
38 COG3071 HemY Uncharacterized e 99.5 1.5E-10 3.3E-15 99.1 29.5 284 69-366 98-389 (400)
39 COG3071 HemY Uncharacterized e 99.5 5.9E-10 1.3E-14 95.6 31.8 284 103-398 96-386 (400)
40 TIGR02521 type_IV_pilW type IV 99.5 8.1E-11 1.8E-15 99.7 26.1 199 163-365 31-230 (234)
41 KOG2076 RNA polymerase III tra 99.5 5.3E-10 1.1E-14 105.0 32.5 349 38-393 153-546 (895)
42 PF13041 PPR_2: PPR repeat fam 99.5 2.2E-13 4.8E-18 84.4 6.7 50 231-280 1-50 (50)
43 KOG1155 Anaphase-promoting com 99.4 5.4E-10 1.2E-14 97.5 28.7 165 198-366 330-494 (559)
44 PRK12370 invasion protein regu 99.4 1.1E-10 2.3E-15 111.4 26.4 250 105-367 275-535 (553)
45 PRK12370 invasion protein regu 99.4 2.6E-10 5.7E-15 108.8 28.9 244 141-395 274-529 (553)
46 TIGR02521 type_IV_pilW type IV 99.4 1.1E-10 2.4E-15 98.8 23.9 203 196-402 29-232 (234)
47 KOG0495 HAT repeat protein [RN 99.4 2.7E-09 5.9E-14 97.0 32.3 328 56-400 517-878 (913)
48 KOG1126 DNA-binding cell divis 99.4 5.6E-11 1.2E-15 108.0 21.5 272 106-393 334-611 (638)
49 PF13041 PPR_2: PPR repeat fam 99.4 7.5E-13 1.6E-17 82.0 6.2 49 266-314 1-49 (50)
50 KOG4318 Bicoid mRNA stability 99.4 6.8E-11 1.5E-15 110.5 19.8 248 83-353 17-286 (1088)
51 PF12569 NARP1: NMDA receptor- 99.4 2.3E-09 5.1E-14 99.3 29.6 291 63-366 12-333 (517)
52 KOG2003 TPR repeat-containing 99.4 2.6E-09 5.6E-14 93.1 27.8 208 176-390 503-711 (840)
53 KOG2002 TPR-containing nuclear 99.4 1.3E-09 2.8E-14 103.2 28.0 112 282-395 626-738 (1018)
54 KOG1129 TPR repeat-containing 99.3 3.5E-10 7.7E-15 94.4 20.2 234 132-373 227-462 (478)
55 KOG2003 TPR repeat-containing 99.3 2.1E-09 4.4E-14 93.7 25.1 184 210-399 502-686 (840)
56 KOG2002 TPR-containing nuclear 99.3 4.2E-09 9.2E-14 99.8 28.3 201 177-380 544-758 (1018)
57 KOG1915 Cell cycle control pro 99.3 4.8E-08 1E-12 85.9 30.4 148 68-224 86-233 (677)
58 KOG0547 Translocase of outer m 99.3 1E-08 2.2E-13 90.3 25.8 221 175-402 338-566 (606)
59 KOG1173 Anaphase-promoting com 99.2 1.6E-08 3.6E-13 90.6 26.4 277 60-348 249-532 (611)
60 PRK11189 lipoprotein NlpI; Pro 99.2 1.6E-08 3.4E-13 88.7 25.8 228 141-378 39-275 (296)
61 KOG1129 TPR repeat-containing 99.2 6.7E-09 1.4E-13 86.9 21.5 230 166-402 226-458 (478)
62 KOG0495 HAT repeat protein [RN 99.2 2.1E-07 4.5E-12 85.1 30.8 312 56-381 480-795 (913)
63 cd05804 StaR_like StaR_like; a 99.2 3.2E-07 7E-12 83.2 33.1 305 57-367 8-336 (355)
64 PRK11189 lipoprotein NlpI; Pro 99.2 5.7E-08 1.2E-12 85.2 26.4 218 69-298 40-266 (296)
65 KOG1174 Anaphase-promoting com 99.2 1.9E-07 4.1E-12 80.8 28.4 297 65-374 206-505 (564)
66 cd05804 StaR_like StaR_like; a 99.2 2.3E-07 5E-12 84.2 31.4 305 91-399 6-333 (355)
67 KOG4318 Bicoid mRNA stability 99.2 7E-09 1.5E-13 97.4 21.2 240 52-318 22-286 (1088)
68 KOG1840 Kinesin light chain [C 99.2 2.2E-08 4.8E-13 91.9 23.4 247 134-380 205-498 (508)
69 PF12569 NARP1: NMDA receptor- 99.1 1.5E-07 3.2E-12 87.5 28.4 290 97-399 10-331 (517)
70 COG3063 PilF Tfp pilus assembl 99.1 5.1E-08 1.1E-12 77.9 21.4 197 165-365 37-234 (250)
71 KOG1915 Cell cycle control pro 99.1 7E-07 1.5E-11 78.8 28.7 330 41-380 158-547 (677)
72 COG3063 PilF Tfp pilus assembl 99.1 1.6E-07 3.6E-12 75.1 22.6 191 63-261 43-235 (250)
73 KOG1840 Kinesin light chain [C 99.0 2.9E-07 6.3E-12 84.7 24.8 238 163-400 199-477 (508)
74 KOG0547 Translocase of outer m 99.0 9.3E-07 2E-11 78.3 25.6 295 60-366 120-490 (606)
75 PF04733 Coatomer_E: Coatomer 99.0 1.2E-07 2.6E-12 82.1 19.2 252 62-332 8-265 (290)
76 KOG1173 Anaphase-promoting com 99.0 3.7E-07 8.1E-12 82.1 22.5 251 51-314 274-533 (611)
77 KOG4340 Uncharacterized conser 99.0 6.2E-07 1.3E-11 74.5 21.7 291 58-363 13-335 (459)
78 KOG1156 N-terminal acetyltrans 98.9 1.4E-05 3E-10 73.5 31.8 183 50-240 70-259 (700)
79 KOG2047 mRNA splicing factor [ 98.9 2.7E-05 5.8E-10 71.6 33.1 308 56-373 139-584 (835)
80 KOG1070 rRNA processing protei 98.9 8E-07 1.7E-11 87.8 24.2 236 161-402 1455-1700(1710)
81 PF04733 Coatomer_E: Coatomer 98.9 1.4E-07 3E-12 81.7 17.4 248 100-366 10-264 (290)
82 KOG3785 Uncharacterized conser 98.9 4.3E-06 9.4E-11 71.3 25.2 125 63-192 65-214 (557)
83 KOG1914 mRNA cleavage and poly 98.9 1.8E-05 3.9E-10 71.3 29.3 339 51-399 16-498 (656)
84 PF12854 PPR_1: PPR repeat 98.9 3.5E-09 7.5E-14 58.9 4.0 29 230-258 4-32 (34)
85 PF12854 PPR_1: PPR repeat 98.9 4E-09 8.7E-14 58.6 4.0 32 263-294 2-33 (34)
86 KOG2376 Signal recognition par 98.8 4.1E-05 8.9E-10 69.7 30.4 318 62-397 19-441 (652)
87 KOG2047 mRNA splicing factor [ 98.8 4.3E-05 9.4E-10 70.3 29.6 340 55-401 248-651 (835)
88 KOG1156 N-terminal acetyltrans 98.8 4.6E-05 1E-09 70.1 28.8 194 68-272 54-256 (700)
89 KOG1174 Anaphase-promoting com 98.7 1.5E-05 3.2E-10 69.4 23.6 267 53-332 230-500 (564)
90 PLN02789 farnesyltranstransfer 98.7 2E-05 4.4E-10 69.3 25.0 181 179-364 88-299 (320)
91 TIGR03302 OM_YfiO outer membra 98.7 3.5E-06 7.5E-11 71.6 19.9 186 161-367 31-232 (235)
92 PLN02789 farnesyltranstransfer 98.7 1.7E-05 3.7E-10 69.8 24.2 212 59-279 41-266 (320)
93 KOG3616 Selective LIM binding 98.7 4.4E-06 9.5E-11 77.7 20.2 207 60-291 620-847 (1636)
94 PRK04841 transcriptional regul 98.7 0.00011 2.3E-09 75.5 32.7 308 60-367 414-760 (903)
95 TIGR03302 OM_YfiO outer membra 98.7 4.7E-06 1E-10 70.8 19.2 184 126-332 32-232 (235)
96 KOG1070 rRNA processing protei 98.7 1.5E-05 3.3E-10 79.2 24.0 251 70-328 1440-1696(1710)
97 PRK10370 formate-dependent nit 98.6 1.3E-05 2.7E-10 65.7 20.0 119 211-332 52-173 (198)
98 KOG2376 Signal recognition par 98.6 0.00039 8.4E-09 63.6 30.1 311 65-388 89-507 (652)
99 KOG1128 Uncharacterized conser 98.6 4E-06 8.7E-11 77.9 18.1 223 87-332 394-616 (777)
100 PRK04841 transcriptional regul 98.6 0.00013 2.9E-09 74.9 31.4 306 96-401 414-759 (903)
101 KOG1128 Uncharacterized conser 98.6 6.2E-06 1.3E-10 76.7 19.0 231 60-314 403-634 (777)
102 KOG4162 Predicted calmodulin-b 98.6 0.00026 5.5E-09 66.8 28.9 203 54-260 322-540 (799)
103 PRK14720 transcript cleavage f 98.6 3.3E-05 7.1E-10 75.9 24.3 241 51-349 27-268 (906)
104 KOG1125 TPR repeat-containing 98.6 9.5E-06 2.1E-10 73.6 19.0 218 64-293 294-523 (579)
105 COG4783 Putative Zn-dependent 98.6 9E-05 2E-09 66.2 24.6 137 174-332 317-454 (484)
106 COG5010 TadD Flp pilus assembl 98.6 1.1E-05 2.4E-10 66.2 17.4 155 170-328 73-227 (257)
107 COG5010 TadD Flp pilus assembl 98.6 4.1E-05 8.9E-10 62.9 20.6 159 95-260 70-229 (257)
108 KOG3785 Uncharacterized conser 98.6 0.00032 7E-09 60.2 26.5 254 96-361 156-451 (557)
109 KOG3081 Vesicle coat complex C 98.6 8.1E-05 1.7E-09 61.3 21.8 249 99-366 16-270 (299)
110 KOG0624 dsRNA-activated protei 98.6 0.00037 7.9E-09 59.6 27.5 293 60-366 43-369 (504)
111 PRK10370 formate-dependent nit 98.5 6.5E-06 1.4E-10 67.4 15.7 119 176-297 52-173 (198)
112 COG4783 Putative Zn-dependent 98.5 0.00052 1.1E-08 61.6 27.9 215 143-382 252-471 (484)
113 KOG4162 Predicted calmodulin-b 98.5 0.0008 1.7E-08 63.5 29.9 120 272-396 654-777 (799)
114 PRK14720 transcript cleavage f 98.5 9.3E-05 2E-09 72.8 24.9 240 88-384 28-268 (906)
115 KOG1125 TPR repeat-containing 98.5 2.7E-05 5.8E-10 70.7 19.6 242 141-390 298-559 (579)
116 KOG3081 Vesicle coat complex C 98.5 0.00046 1E-08 57.0 24.0 251 62-332 15-271 (299)
117 PRK15359 type III secretion sy 98.5 1.6E-05 3.6E-10 61.4 15.2 92 169-262 30-121 (144)
118 KOG0624 dsRNA-activated protei 98.4 0.00084 1.8E-08 57.5 26.1 296 89-396 36-364 (504)
119 KOG0548 Molecular co-chaperone 98.4 0.0013 2.8E-08 59.7 27.9 333 36-381 14-467 (539)
120 KOG4340 Uncharacterized conser 98.4 0.00015 3.2E-09 60.7 20.5 263 54-328 43-335 (459)
121 KOG3616 Selective LIM binding 98.4 4.6E-05 1E-09 71.2 18.8 187 141-361 745-931 (1636)
122 PRK15359 type III secretion sy 98.4 1.6E-05 3.4E-10 61.6 13.8 93 203-297 29-121 (144)
123 KOG3617 WD40 and TPR repeat-co 98.4 7.4E-05 1.6E-09 70.7 20.1 251 32-330 736-994 (1416)
124 TIGR00756 PPR pentatricopeptid 98.4 5.7E-07 1.2E-11 50.7 4.2 33 235-267 2-34 (35)
125 PRK15179 Vi polysaccharide bio 98.4 6.4E-05 1.4E-09 73.0 20.7 210 96-316 54-268 (694)
126 PRK15179 Vi polysaccharide bio 98.4 8.3E-05 1.8E-09 72.2 21.1 161 69-238 66-227 (694)
127 TIGR02552 LcrH_SycD type III s 98.4 2.6E-05 5.7E-10 59.7 14.7 24 235-258 53-76 (135)
128 KOG0985 Vesicle coat protein c 98.4 0.0011 2.3E-08 64.6 27.4 125 51-188 948-1073(1666)
129 KOG3060 Uncharacterized conser 98.4 0.00044 9.5E-09 56.7 21.1 188 69-262 26-220 (289)
130 TIGR02552 LcrH_SycD type III s 98.3 2.7E-05 5.9E-10 59.7 14.0 97 164-262 18-114 (135)
131 PF13812 PPR_3: Pentatricopept 98.3 1.2E-06 2.7E-11 48.9 4.3 32 235-266 3-34 (34)
132 TIGR00756 PPR pentatricopeptid 98.3 1.7E-06 3.8E-11 48.6 4.3 33 340-372 2-34 (35)
133 KOG0985 Vesicle coat protein c 98.2 0.0011 2.4E-08 64.5 24.5 289 63-401 1056-1369(1666)
134 PF09976 TPR_21: Tetratricopep 98.2 0.00011 2.3E-09 57.1 15.0 16 346-361 126-141 (145)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5E-05 1.1E-09 68.2 14.7 114 141-260 182-295 (395)
136 PF13812 PPR_3: Pentatricopept 98.2 2.9E-06 6.3E-11 47.4 4.3 32 340-371 3-34 (34)
137 KOG3060 Uncharacterized conser 98.2 0.0022 4.8E-08 52.7 23.2 85 211-297 99-183 (289)
138 PF10037 MRP-S27: Mitochondria 98.2 3.1E-05 6.6E-10 69.9 12.6 124 158-281 61-186 (429)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00022 4.8E-09 64.2 17.4 122 202-330 173-295 (395)
140 PF10037 MRP-S27: Mitochondria 98.1 4.3E-05 9.2E-10 69.0 12.4 121 125-246 64-186 (429)
141 KOG2053 Mitochondrial inherita 98.1 0.0096 2.1E-07 57.6 30.8 224 67-298 21-256 (932)
142 KOG3617 WD40 and TPR repeat-co 98.1 0.0011 2.3E-08 63.3 20.8 266 50-365 721-994 (1416)
143 PF01535 PPR: PPR repeat; Int 98.1 5.4E-06 1.2E-10 45.1 3.4 28 235-262 2-29 (31)
144 PF09976 TPR_21: Tetratricopep 98.0 0.00031 6.7E-09 54.5 14.1 80 141-222 61-142 (145)
145 PF08579 RPM2: Mitochondrial r 98.0 0.00011 2.5E-09 52.1 10.2 78 308-385 30-116 (120)
146 PF08579 RPM2: Mitochondrial r 98.0 0.0001 2.3E-09 52.3 10.0 76 239-314 31-115 (120)
147 cd00189 TPR Tetratricopeptide 98.0 0.00017 3.6E-09 50.8 11.1 85 172-258 9-93 (100)
148 PF01535 PPR: PPR repeat; Int 98.0 1E-05 2.3E-10 43.9 3.4 29 270-298 2-30 (31)
149 cd00189 TPR Tetratricopeptide 97.9 0.0003 6.6E-09 49.4 11.2 92 202-295 4-95 (100)
150 PF06239 ECSIT: Evolutionarily 97.9 0.00044 9.5E-09 55.6 11.9 128 218-366 34-167 (228)
151 PF05843 Suf: Suppressor of fo 97.8 0.00055 1.2E-08 59.5 13.6 145 164-313 2-150 (280)
152 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.001 2.2E-08 49.5 13.5 95 238-332 7-105 (119)
153 PF05843 Suf: Suppressor of fo 97.8 0.00077 1.7E-08 58.6 14.1 130 130-262 3-136 (280)
154 PF06239 ECSIT: Evolutionarily 97.8 0.00034 7.4E-09 56.2 10.3 116 182-318 33-153 (228)
155 KOG1914 mRNA cleavage and poly 97.8 0.0073 1.6E-07 55.1 19.5 151 179-332 347-501 (656)
156 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00086 1.9E-08 49.8 12.2 27 201-227 79-105 (119)
157 KOG0548 Molecular co-chaperone 97.8 0.032 7E-07 51.0 26.8 201 133-342 230-463 (539)
158 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.031 6.7E-07 50.1 27.2 129 269-401 398-530 (660)
159 PRK10866 outer membrane biogen 97.7 0.013 2.9E-07 49.6 19.8 176 170-365 39-239 (243)
160 PRK02603 photosystem I assembl 97.7 0.0023 5E-08 51.2 14.6 85 165-250 37-123 (172)
161 PF14938 SNAP: Soluble NSF att 97.7 0.0061 1.3E-07 53.2 18.3 25 307-331 159-183 (282)
162 PRK10866 outer membrane biogen 97.7 0.012 2.6E-07 49.8 19.3 180 129-330 34-239 (243)
163 KOG2053 Mitochondrial inherita 97.7 0.061 1.3E-06 52.3 26.1 224 102-333 20-256 (932)
164 PLN03088 SGT1, suppressor of 97.7 0.0017 3.8E-08 58.5 14.5 86 141-228 15-100 (356)
165 CHL00033 ycf3 photosystem I as 97.7 0.0021 4.6E-08 51.3 13.6 94 163-257 35-137 (168)
166 PF12895 Apc3: Anaphase-promot 97.7 0.00017 3.7E-09 50.0 6.3 20 204-223 31-50 (84)
167 KOG1127 TPR repeat-containing 97.6 0.0053 1.1E-07 60.0 17.7 182 142-331 472-658 (1238)
168 PRK15363 pathogenicity island 97.6 0.0014 2.9E-08 50.4 11.3 94 94-191 38-131 (157)
169 PLN03088 SGT1, suppressor of 97.6 0.0017 3.7E-08 58.6 13.7 92 170-263 9-100 (356)
170 PRK15363 pathogenicity island 97.6 0.0038 8.2E-08 48.0 13.3 93 203-297 40-132 (157)
171 CHL00033 ycf3 photosystem I as 97.6 0.0022 4.7E-08 51.2 12.7 65 233-297 35-101 (168)
172 PRK10153 DNA-binding transcrip 97.6 0.0055 1.2E-07 57.9 17.2 144 229-377 333-490 (517)
173 PF12895 Apc3: Anaphase-promot 97.6 0.00019 4.2E-09 49.7 5.7 16 276-291 33-48 (84)
174 KOG1127 TPR repeat-containing 97.6 0.0049 1.1E-07 60.2 16.5 185 70-261 473-658 (1238)
175 PRK02603 photosystem I assembl 97.6 0.0051 1.1E-07 49.2 14.5 91 197-288 34-126 (172)
176 PRK10153 DNA-binding transcrip 97.5 0.008 1.7E-07 56.8 17.2 63 267-331 419-481 (517)
177 PF04840 Vps16_C: Vps16, C-ter 97.5 0.056 1.2E-06 47.7 28.9 140 234-399 178-317 (319)
178 PF14559 TPR_19: Tetratricopep 97.5 0.00083 1.8E-08 44.3 7.8 61 174-237 2-62 (68)
179 PF12688 TPR_5: Tetratrico pep 97.5 0.0095 2.1E-07 44.0 13.8 87 171-259 9-101 (120)
180 KOG2280 Vacuolar assembly/sort 97.4 0.13 2.8E-06 49.2 22.8 292 57-365 439-771 (829)
181 PF14559 TPR_19: Tetratricopep 97.3 0.00075 1.6E-08 44.5 5.9 51 211-262 4-54 (68)
182 PF03704 BTAD: Bacterial trans 97.3 0.0077 1.7E-07 46.7 12.3 57 202-259 66-122 (146)
183 KOG2041 WD40 repeat protein [G 97.3 0.17 3.7E-06 48.1 23.2 114 275-388 930-1072(1189)
184 PF13432 TPR_16: Tetratricopep 97.3 0.0015 3.3E-08 42.5 6.9 53 207-260 6-58 (65)
185 PF12688 TPR_5: Tetratrico pep 97.3 0.016 3.4E-07 42.9 12.7 99 141-244 14-117 (120)
186 PF14938 SNAP: Soluble NSF att 97.2 0.12 2.5E-06 45.2 20.3 92 205-297 121-225 (282)
187 PF03704 BTAD: Bacterial trans 97.2 0.012 2.5E-07 45.7 12.5 72 305-377 64-140 (146)
188 KOG0553 TPR repeat-containing 97.2 0.0054 1.2E-07 51.8 10.9 102 241-346 89-190 (304)
189 PF13525 YfiO: Outer membrane 97.2 0.055 1.2E-06 44.6 16.6 52 141-192 18-71 (203)
190 KOG1538 Uncharacterized conser 97.2 0.064 1.4E-06 50.3 18.0 54 235-297 749-802 (1081)
191 KOG2796 Uncharacterized conser 97.2 0.028 6.1E-07 46.7 14.1 129 202-331 181-314 (366)
192 PF13525 YfiO: Outer membrane 97.2 0.071 1.5E-06 43.9 16.9 171 166-357 8-197 (203)
193 PF13432 TPR_16: Tetratricopep 97.1 0.0023 4.9E-08 41.7 6.5 54 277-331 6-59 (65)
194 KOG0553 TPR repeat-containing 97.1 0.0093 2E-07 50.5 11.2 84 141-226 94-177 (304)
195 PF04840 Vps16_C: Vps16, C-ter 97.1 0.18 3.8E-06 44.6 26.4 111 199-329 178-288 (319)
196 PF12921 ATP13: Mitochondrial 97.1 0.016 3.4E-07 43.4 11.1 95 267-381 1-96 (126)
197 PF13414 TPR_11: TPR repeat; P 97.1 0.0031 6.8E-08 41.6 6.6 58 165-223 5-63 (69)
198 KOG2796 Uncharacterized conser 97.0 0.15 3.2E-06 42.6 22.3 154 144-307 165-323 (366)
199 COG4235 Cytochrome c biogenesi 97.0 0.067 1.4E-06 45.6 15.5 101 230-332 153-256 (287)
200 PF13414 TPR_11: TPR repeat; P 97.0 0.004 8.8E-08 41.0 6.9 65 197-262 2-67 (69)
201 PRK10803 tol-pal system protei 96.9 0.023 5E-07 48.6 12.3 88 244-331 154-245 (263)
202 COG4235 Cytochrome c biogenesi 96.9 0.057 1.2E-06 46.0 14.2 101 195-297 153-256 (287)
203 PRK10803 tol-pal system protei 96.9 0.023 5.1E-07 48.6 12.1 97 269-367 144-246 (263)
204 KOG2280 Vacuolar assembly/sort 96.8 0.56 1.2E-05 45.2 21.0 112 232-362 683-794 (829)
205 PF13281 DUF4071: Domain of un 96.7 0.4 8.7E-06 43.0 20.4 33 335-367 302-334 (374)
206 PF12921 ATP13: Mitochondrial 96.7 0.029 6.2E-07 42.0 10.1 27 233-259 2-28 (126)
207 COG4700 Uncharacterized protei 96.7 0.21 4.5E-06 39.5 18.8 126 231-358 87-213 (251)
208 PF13371 TPR_9: Tetratricopept 96.7 0.013 2.9E-07 39.0 7.7 53 208-261 5-57 (73)
209 COG3898 Uncharacterized membra 96.7 0.41 8.9E-06 42.4 28.1 287 68-371 97-396 (531)
210 KOG0550 Molecular chaperone (D 96.7 0.43 9.2E-06 42.7 18.1 85 279-367 260-350 (486)
211 PF09205 DUF1955: Domain of un 96.6 0.064 1.4E-06 39.6 10.8 63 165-228 88-150 (161)
212 COG4700 Uncharacterized protei 96.6 0.26 5.6E-06 39.0 17.8 133 195-329 86-219 (251)
213 KOG1130 Predicted G-alpha GTPa 96.6 0.031 6.8E-07 49.5 10.4 286 63-366 25-343 (639)
214 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.55 1.2E-05 42.5 17.8 146 198-349 397-546 (660)
215 KOG3941 Intermediate in Toll s 96.5 0.03 6.5E-07 47.0 9.5 89 230-318 64-173 (406)
216 PF13371 TPR_9: Tetratricopept 96.5 0.021 4.6E-07 38.0 7.4 56 171-227 3-58 (73)
217 PRK15331 chaperone protein Sic 96.4 0.17 3.6E-06 39.4 12.6 86 209-296 48-133 (165)
218 PF10300 DUF3808: Protein of u 96.4 0.3 6.6E-06 45.9 16.6 162 96-260 193-374 (468)
219 KOG3941 Intermediate in Toll s 96.3 0.09 1.9E-06 44.3 11.2 101 266-366 65-187 (406)
220 PF13170 DUF4003: Protein of u 96.3 0.67 1.4E-05 40.5 18.8 130 214-345 78-224 (297)
221 KOG1538 Uncharacterized conser 96.2 0.83 1.8E-05 43.3 17.9 87 267-364 746-843 (1081)
222 PF08631 SPO22: Meiosis protei 96.2 0.77 1.7E-05 40.0 23.7 62 165-227 86-150 (278)
223 PF13424 TPR_12: Tetratricopep 96.1 0.015 3.3E-07 39.3 5.3 61 305-365 7-73 (78)
224 smart00299 CLH Clathrin heavy 96.1 0.47 1E-05 36.3 15.3 83 239-329 13-95 (140)
225 PF13424 TPR_12: Tetratricopep 96.0 0.025 5.5E-07 38.2 5.7 25 235-259 7-31 (78)
226 PF04053 Coatomer_WDAD: Coatom 95.9 0.39 8.4E-06 44.6 14.8 131 165-328 297-427 (443)
227 PRK15331 chaperone protein Sic 95.9 0.27 5.8E-06 38.2 11.4 93 131-226 41-133 (165)
228 KOG2610 Uncharacterized conser 95.9 0.86 1.9E-05 39.7 15.2 151 141-293 116-272 (491)
229 PF13170 DUF4003: Protein of u 95.9 1.1 2.5E-05 39.1 19.9 127 146-274 80-223 (297)
230 KOG1920 IkappaB kinase complex 95.8 1.3 2.9E-05 45.0 18.3 84 235-330 941-1026(1265)
231 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.51 1.1E-05 43.1 13.9 65 161-227 73-141 (453)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.29 6.4E-06 44.6 12.4 66 195-262 72-141 (453)
233 KOG2041 WD40 repeat protein [G 95.5 2.5 5.3E-05 40.7 21.5 191 163-366 852-1085(1189)
234 smart00299 CLH Clathrin heavy 95.4 0.86 1.9E-05 34.8 15.8 43 168-211 12-54 (140)
235 COG3629 DnrI DNA-binding trans 95.4 0.22 4.7E-06 42.7 10.3 79 198-277 153-236 (280)
236 PF04053 Coatomer_WDAD: Coatom 95.3 0.3 6.5E-06 45.3 11.6 159 171-364 269-428 (443)
237 PF13281 DUF4071: Domain of un 95.1 2.4 5.1E-05 38.2 20.3 163 168-332 146-334 (374)
238 KOG1585 Protein required for f 95.1 1.6 3.5E-05 36.3 13.6 117 245-362 122-251 (308)
239 PF13512 TPR_18: Tetratricopep 95.1 0.82 1.8E-05 34.7 11.3 53 175-227 22-76 (142)
240 COG4105 ComL DNA uptake lipopr 95.0 1.8 3.9E-05 36.4 21.1 52 175-226 46-99 (254)
241 PRK11906 transcriptional regul 95.0 2.1 4.6E-05 39.3 15.7 148 143-293 273-432 (458)
242 PF10300 DUF3808: Protein of u 95.0 2.5 5.4E-05 39.9 17.1 161 203-366 193-375 (468)
243 COG3118 Thioredoxin domain-con 95.0 2 4.4E-05 36.8 16.3 145 171-320 142-289 (304)
244 COG1729 Uncharacterized protei 95.0 0.51 1.1E-05 39.9 11.0 97 235-332 144-244 (262)
245 COG4649 Uncharacterized protei 95.0 1.4 2.9E-05 34.6 14.3 138 53-192 57-196 (221)
246 KOG0543 FKBP-type peptidyl-pro 94.8 1.8 3.9E-05 38.8 14.4 96 164-261 258-354 (397)
247 KOG2610 Uncharacterized conser 94.8 1 2.2E-05 39.3 12.3 154 175-330 115-274 (491)
248 COG4649 Uncharacterized protei 94.7 1.6 3.5E-05 34.2 12.9 123 102-225 69-194 (221)
249 PF08631 SPO22: Meiosis protei 94.7 2.7 5.8E-05 36.6 24.3 188 175-365 47-273 (278)
250 PF07035 Mic1: Colon cancer-as 94.6 1.8 3.8E-05 34.1 14.2 99 221-329 17-115 (167)
251 PF13512 TPR_18: Tetratricopep 94.5 1.2 2.6E-05 33.8 10.9 54 244-297 21-76 (142)
252 COG0457 NrfG FOG: TPR repeat [ 94.5 2.3 5E-05 35.0 25.1 200 164-366 60-264 (291)
253 KOG4570 Uncharacterized conser 94.4 0.6 1.3E-05 40.2 10.1 106 86-193 59-165 (418)
254 COG3898 Uncharacterized membra 94.3 3.8 8.3E-05 36.7 30.6 290 70-382 68-371 (531)
255 KOG0550 Molecular chaperone (D 94.3 4 8.6E-05 36.8 19.0 165 89-262 166-350 (486)
256 KOG1130 Predicted G-alpha GTPa 94.2 0.33 7.2E-06 43.3 8.5 130 269-398 196-340 (639)
257 KOG0543 FKBP-type peptidyl-pro 94.2 1.3 2.7E-05 39.7 12.0 91 171-262 216-320 (397)
258 PF09205 DUF1955: Domain of un 94.1 1.8 3.8E-05 32.3 13.8 138 211-370 15-152 (161)
259 COG4105 ComL DNA uptake lipopr 94.1 3.1 6.7E-05 35.0 19.9 52 141-192 47-100 (254)
260 COG3629 DnrI DNA-binding trans 94.1 0.79 1.7E-05 39.3 10.5 60 270-330 155-214 (280)
261 COG1729 Uncharacterized protei 94.1 0.99 2.2E-05 38.2 10.8 87 175-262 153-244 (262)
262 PF04184 ST7: ST7 protein; In 94.1 5 0.00011 37.3 17.7 169 59-244 172-342 (539)
263 PRK11906 transcriptional regul 94.0 4.9 0.00011 37.1 16.8 161 56-222 252-431 (458)
264 PF13428 TPR_14: Tetratricopep 94.0 0.19 4.1E-06 29.5 4.8 21 240-260 8-28 (44)
265 PF13428 TPR_14: Tetratricopep 93.9 0.32 6.9E-06 28.5 5.6 27 201-227 4-30 (44)
266 PF09613 HrpB1_HrpK: Bacterial 93.7 2.6 5.6E-05 32.8 11.8 16 141-156 57-72 (160)
267 KOG2114 Vacuolar assembly/sort 93.6 1.5 3.3E-05 43.0 12.2 176 130-329 337-516 (933)
268 PF09613 HrpB1_HrpK: Bacterial 93.3 3.1 6.8E-05 32.3 12.8 51 245-297 22-73 (160)
269 KOG1920 IkappaB kinase complex 93.2 7.2 0.00016 40.1 16.5 109 133-261 913-1027(1265)
270 COG3118 Thioredoxin domain-con 93.2 5.1 0.00011 34.5 16.7 122 207-331 143-264 (304)
271 KOG1550 Extracellular protein 93.1 8.9 0.00019 37.2 19.7 180 107-298 228-427 (552)
272 PF00637 Clathrin: Region in C 93.0 0.0031 6.7E-08 48.7 -5.4 52 241-292 15-66 (143)
273 PF04184 ST7: ST7 protein; In 92.9 8 0.00017 36.0 15.9 59 273-331 264-323 (539)
274 TIGR02561 HrpB1_HrpK type III 92.6 3.8 8.1E-05 31.4 11.5 52 104-158 23-74 (153)
275 KOG1585 Protein required for f 92.4 5.7 0.00012 33.2 17.4 28 91-118 31-58 (308)
276 PF07035 Mic1: Colon cancer-as 92.3 4.6 9.9E-05 31.8 15.5 135 183-331 14-148 (167)
277 KOG4555 TPR repeat-containing 92.3 3.7 7.9E-05 30.6 11.4 50 141-191 56-105 (175)
278 KOG4570 Uncharacterized conser 92.3 2.2 4.7E-05 36.9 10.1 48 213-260 115-162 (418)
279 PF13176 TPR_7: Tetratricopept 92.2 0.42 9.1E-06 26.5 4.2 23 236-258 2-24 (36)
280 COG0457 NrfG FOG: TPR repeat [ 92.1 5.8 0.00013 32.5 26.5 215 176-394 36-257 (291)
281 KOG1550 Extracellular protein 92.0 12 0.00027 36.2 23.0 276 71-367 228-538 (552)
282 KOG4555 TPR repeat-containing 92.0 4 8.6E-05 30.5 11.0 52 208-260 53-104 (175)
283 PF10602 RPN7: 26S proteasome 91.9 1.6 3.5E-05 34.9 8.8 97 269-365 37-140 (177)
284 PF10602 RPN7: 26S proteasome 91.6 4.4 9.5E-05 32.5 11.0 62 199-260 37-100 (177)
285 PF13176 TPR_7: Tetratricopept 91.5 0.52 1.1E-05 26.2 4.0 23 166-188 2-24 (36)
286 KOG1941 Acetylcholine receptor 91.5 6.7 0.00015 34.8 12.3 227 67-295 18-273 (518)
287 PF07079 DUF1347: Protein of u 91.2 12 0.00026 34.4 23.2 73 298-374 255-332 (549)
288 KOG2114 Vacuolar assembly/sort 91.1 18 0.00038 36.1 18.5 180 92-295 335-517 (933)
289 cd00923 Cyt_c_Oxidase_Va Cytoc 90.2 3.1 6.8E-05 29.1 7.5 46 285-330 24-69 (103)
290 KOG1941 Acetylcholine receptor 90.0 10 0.00022 33.8 12.0 127 238-364 127-272 (518)
291 PF02284 COX5A: Cytochrome c o 89.4 2.5 5.5E-05 29.8 6.6 46 286-331 28-73 (108)
292 PF13431 TPR_17: Tetratricopep 89.3 0.55 1.2E-05 25.7 2.8 21 197-217 12-32 (34)
293 PF13431 TPR_17: Tetratricopep 88.9 0.6 1.3E-05 25.6 2.8 24 230-253 10-33 (34)
294 PF13929 mRNA_stabil: mRNA sta 88.9 15 0.00031 31.8 17.0 136 246-381 141-286 (292)
295 COG2909 MalT ATP-dependent tra 88.8 28 0.0006 35.0 23.0 223 141-363 428-684 (894)
296 COG4785 NlpI Lipoprotein NlpI, 88.6 13 0.00027 30.7 15.7 67 125-192 96-162 (297)
297 PF11207 DUF2989: Protein of u 88.3 5.6 0.00012 32.3 8.8 72 215-287 123-197 (203)
298 COG4455 ImpE Protein of avirul 88.1 4.1 8.9E-05 33.4 7.9 77 270-347 3-81 (273)
299 KOG0890 Protein kinase of the 88.0 52 0.0011 37.2 23.1 293 60-367 1388-1731(2382)
300 PF07079 DUF1347: Protein of u 88.0 22 0.00047 32.8 28.9 124 249-380 396-532 (549)
301 PF07163 Pex26: Pex26 protein; 87.8 8.4 0.00018 33.0 9.9 87 170-256 90-181 (309)
302 PF11207 DUF2989: Protein of u 87.6 6.3 0.00014 32.0 8.8 72 250-322 123-197 (203)
303 PF13374 TPR_10: Tetratricopep 86.9 2 4.3E-05 24.3 4.5 25 235-259 4-28 (42)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 86.5 9 0.0002 26.9 8.9 62 143-205 22-83 (103)
305 PF00515 TPR_1: Tetratricopept 86.5 1.8 3.9E-05 23.3 3.9 22 308-329 6-27 (34)
306 PF00515 TPR_1: Tetratricopept 86.5 1.4 2.9E-05 23.8 3.4 28 339-366 2-29 (34)
307 PF00637 Clathrin: Region in C 86.2 0.29 6.3E-06 37.6 0.7 84 169-259 13-96 (143)
308 PF10345 Cohesin_load: Cohesin 86.1 37 0.0008 33.5 27.3 188 72-260 38-252 (608)
309 PF13929 mRNA_stabil: mRNA sta 86.1 22 0.00047 30.8 18.2 118 141-258 141-263 (292)
310 PF07719 TPR_2: Tetratricopept 85.6 1.6 3.4E-05 23.4 3.4 25 341-365 4-28 (34)
311 TIGR02561 HrpB1_HrpK type III 85.4 15 0.00032 28.3 11.9 19 279-297 55-73 (153)
312 PF13374 TPR_10: Tetratricopep 85.4 2.3 4.9E-05 24.0 4.2 25 270-294 4-28 (42)
313 COG1747 Uncharacterized N-term 83.6 40 0.00086 31.8 20.1 178 161-346 64-247 (711)
314 COG3947 Response regulator con 83.6 29 0.00062 30.1 15.7 70 306-376 282-356 (361)
315 PF02284 COX5A: Cytochrome c o 83.2 14 0.0003 26.3 9.3 63 143-206 25-87 (108)
316 COG4785 NlpI Lipoprotein NlpI, 83.1 25 0.00054 29.1 15.7 163 87-262 94-266 (297)
317 COG2976 Uncharacterized protei 83.0 23 0.0005 28.7 12.5 90 98-193 96-189 (207)
318 KOG1258 mRNA processing protei 82.8 46 0.00099 31.9 30.4 106 281-391 379-493 (577)
319 KOG2396 HAT (Half-A-TPR) repea 82.8 42 0.00092 31.5 29.8 97 300-400 456-557 (568)
320 COG4455 ImpE Protein of avirul 82.5 12 0.00026 30.9 8.1 76 166-242 4-81 (273)
321 PF07719 TPR_2: Tetratricopept 82.2 4.6 9.9E-05 21.5 4.3 24 237-260 5-28 (34)
322 TIGR03504 FimV_Cterm FimV C-te 82.1 3.2 6.9E-05 24.3 3.7 23 344-366 5-27 (44)
323 TIGR02508 type_III_yscG type I 81.7 16 0.00035 25.9 9.3 55 141-202 52-106 (115)
324 PRK09687 putative lyase; Provi 81.3 36 0.00078 29.7 27.0 137 197-349 141-278 (280)
325 TIGR02508 type_III_yscG type I 81.1 17 0.00037 25.8 8.0 50 207-262 48-97 (115)
326 KOG4648 Uncharacterized conser 81.1 8.9 0.00019 33.8 7.4 53 241-295 105-158 (536)
327 KOG0276 Vesicle coat complex C 80.2 59 0.0013 31.4 13.1 100 208-328 647-746 (794)
328 PRK11619 lytic murein transgly 79.2 71 0.0015 31.8 23.5 274 70-365 81-373 (644)
329 PRK09687 putative lyase; Provi 79.1 43 0.00093 29.2 27.9 137 231-383 140-277 (280)
330 KOG0276 Vesicle coat complex C 78.9 31 0.00068 33.1 10.6 131 200-363 616-746 (794)
331 PF11846 DUF3366: Domain of un 78.6 9 0.0002 31.2 6.7 55 66-120 119-173 (193)
332 PF07721 TPR_4: Tetratricopept 78.2 4.4 9.6E-05 20.4 3.1 15 206-220 9-23 (26)
333 PF07575 Nucleopor_Nup85: Nup8 78.0 27 0.00059 34.0 10.8 135 232-383 404-540 (566)
334 PF13181 TPR_8: Tetratricopept 77.4 7.7 0.00017 20.6 4.2 27 340-366 3-29 (34)
335 PF09477 Type_III_YscG: Bacter 77.2 24 0.00053 25.3 9.0 29 230-260 68-96 (116)
336 PF13181 TPR_8: Tetratricopept 76.9 9 0.00019 20.3 4.4 26 235-260 3-28 (34)
337 PF10579 Rapsyn_N: Rapsyn N-te 76.9 6.8 0.00015 26.3 4.3 52 62-114 14-66 (80)
338 PF13174 TPR_6: Tetratricopept 76.5 4.7 0.0001 21.2 3.2 20 242-261 9-28 (33)
339 PF07163 Pex26: Pex26 protein; 75.1 49 0.0011 28.5 9.9 91 201-291 86-181 (309)
340 PRK15180 Vi polysaccharide bio 74.4 73 0.0016 29.8 11.4 119 176-298 302-421 (831)
341 PF13762 MNE1: Mitochondrial s 73.9 38 0.00083 26.0 10.9 86 307-392 43-134 (145)
342 TIGR03504 FimV_Cterm FimV C-te 73.5 8.6 0.00019 22.5 3.8 23 274-296 5-27 (44)
343 PF11848 DUF3368: Domain of un 73.2 15 0.00033 21.9 4.9 33 349-381 13-45 (48)
344 cd00280 TRFH Telomeric Repeat 73.0 24 0.00053 28.2 7.2 66 284-352 85-157 (200)
345 KOG4077 Cytochrome c oxidase, 72.6 33 0.00071 25.5 7.2 47 286-332 67-113 (149)
346 COG3947 Response regulator con 72.3 66 0.0014 28.0 16.7 57 273-330 284-340 (361)
347 PF10579 Rapsyn_N: Rapsyn N-te 71.9 14 0.0003 24.9 4.8 19 306-324 46-64 (80)
348 KOG2063 Vacuolar assembly/sort 71.7 1.3E+02 0.0027 31.0 17.5 65 141-211 572-639 (877)
349 PF14669 Asp_Glu_race_2: Putat 71.5 53 0.0011 26.6 13.3 56 308-363 137-206 (233)
350 PF08424 NRDE-2: NRDE-2, neces 71.0 77 0.0017 28.3 16.8 118 250-369 48-185 (321)
351 PHA02875 ankyrin repeat protei 70.8 89 0.0019 28.9 16.8 10 173-182 75-84 (413)
352 TIGR01503 MthylAspMut_E methyl 70.7 6.1 0.00013 36.3 4.0 125 178-309 69-217 (480)
353 KOG4507 Uncharacterized conser 70.1 60 0.0013 31.3 10.1 152 88-244 568-721 (886)
354 PF06552 TOM20_plant: Plant sp 70.1 55 0.0012 26.2 8.7 42 249-298 96-137 (186)
355 PRK15180 Vi polysaccharide bio 69.6 1E+02 0.0022 29.0 11.4 123 206-332 297-420 (831)
356 PF09477 Type_III_YscG: Bacter 69.4 40 0.00086 24.3 9.5 79 213-298 21-99 (116)
357 PF04097 Nic96: Nup93/Nic96; 69.3 1.2E+02 0.0027 29.9 13.0 71 126-198 110-187 (613)
358 PF14689 SPOB_a: Sensor_kinase 68.6 13 0.00028 23.7 4.2 29 337-365 22-50 (62)
359 KOG4234 TPR repeat-containing 68.5 65 0.0014 26.4 9.5 21 242-262 177-197 (271)
360 PF14689 SPOB_a: Sensor_kinase 68.4 15 0.00032 23.4 4.4 23 238-260 28-50 (62)
361 KOG4077 Cytochrome c oxidase, 67.8 40 0.00087 25.1 6.8 46 147-192 68-113 (149)
362 PF11663 Toxin_YhaV: Toxin wit 67.3 7.3 0.00016 29.2 3.1 29 352-382 109-137 (140)
363 PF11846 DUF3366: Domain of un 67.0 29 0.00063 28.2 7.1 31 300-330 141-171 (193)
364 KOG4648 Uncharacterized conser 66.9 53 0.0011 29.2 8.6 86 137-226 107-193 (536)
365 cd08819 CARD_MDA5_2 Caspase ac 65.9 41 0.00089 23.2 7.2 37 280-321 48-84 (88)
366 KOG2297 Predicted translation 65.3 96 0.0021 27.2 12.4 42 360-401 358-399 (412)
367 KOG2066 Vacuolar assembly/sort 64.4 1.6E+02 0.0035 29.5 12.3 152 205-366 363-533 (846)
368 PF10345 Cohesin_load: Cohesin 64.3 1.5E+02 0.0034 29.2 18.8 21 204-224 65-86 (608)
369 PF02259 FAT: FAT domain; Int 64.2 1.1E+02 0.0023 27.4 23.4 53 62-119 5-57 (352)
370 smart00028 TPR Tetratricopepti 63.8 16 0.00035 18.1 3.6 25 341-365 4-28 (34)
371 PF11848 DUF3368: Domain of un 63.8 29 0.00063 20.7 5.1 32 314-345 13-44 (48)
372 PF06552 TOM20_plant: Plant sp 63.4 52 0.0011 26.3 7.3 42 214-263 96-137 (186)
373 PF11663 Toxin_YhaV: Toxin wit 62.9 8 0.00017 29.0 2.6 29 246-276 108-136 (140)
374 PF08424 NRDE-2: NRDE-2, neces 61.8 1.2E+02 0.0026 27.1 17.9 26 309-334 160-185 (321)
375 PF13762 MNE1: Mitochondrial s 61.4 73 0.0016 24.5 11.8 50 302-351 78-128 (145)
376 KOG0991 Replication factor C, 61.3 1E+02 0.0022 26.1 12.0 138 201-348 133-282 (333)
377 PF14669 Asp_Glu_race_2: Putat 61.2 88 0.0019 25.4 8.5 56 167-222 136-205 (233)
378 COG5187 RPN7 26S proteasome re 61.1 1.1E+02 0.0024 26.6 12.0 96 268-365 115-219 (412)
379 KOG0687 26S proteasome regulat 60.8 1.2E+02 0.0026 26.9 13.5 133 230-366 67-209 (393)
380 COG1747 Uncharacterized N-term 60.7 1.6E+02 0.0034 28.1 23.3 182 123-313 62-249 (711)
381 COG0790 FOG: TPR repeat, SEL1 59.1 1.2E+02 0.0026 26.3 21.9 149 141-298 54-221 (292)
382 KOG2297 Predicted translation 58.8 1.3E+02 0.0028 26.5 16.0 17 340-356 323-339 (412)
383 PF14853 Fis1_TPR_C: Fis1 C-te 58.4 24 0.00052 21.6 3.8 20 346-365 9-28 (53)
384 COG0735 Fur Fe2+/Zn2+ uptake r 58.1 84 0.0018 24.2 7.8 43 309-351 26-68 (145)
385 PF10366 Vps39_1: Vacuolar sor 58.0 69 0.0015 23.2 7.5 26 271-296 42-67 (108)
386 COG5108 RPO41 Mitochondrial DN 57.7 90 0.002 30.6 9.0 90 238-330 33-130 (1117)
387 PHA02875 ankyrin repeat protei 57.6 1.6E+02 0.0035 27.2 15.9 215 64-302 8-229 (413)
388 PF08311 Mad3_BUB1_I: Mad3/BUB 55.6 85 0.0018 23.4 9.5 60 126-188 64-124 (126)
389 COG5159 RPN6 26S proteasome re 54.0 1.5E+02 0.0033 25.8 14.2 205 140-344 15-249 (421)
390 cd08819 CARD_MDA5_2 Caspase ac 53.7 71 0.0015 22.0 6.5 14 212-225 50-63 (88)
391 PF09868 DUF2095: Uncharacteri 52.7 55 0.0012 23.7 5.2 30 204-234 67-96 (128)
392 PF10475 DUF2450: Protein of u 52.5 1.3E+02 0.0029 26.3 9.1 23 301-323 195-217 (291)
393 KOG2034 Vacuolar sorting prote 52.2 2.8E+02 0.0061 28.4 24.1 79 320-400 610-688 (911)
394 PRK10564 maltose regulon perip 52.0 34 0.00073 29.8 5.0 30 306-335 260-289 (303)
395 PRK10564 maltose regulon perip 51.9 35 0.00075 29.8 5.1 30 236-265 260-289 (303)
396 PRK13341 recombination factor 51.4 2.8E+02 0.0061 28.2 15.1 45 72-118 171-222 (725)
397 KOG1114 Tripeptidyl peptidase 51.2 3.1E+02 0.0066 28.6 12.9 81 284-365 1212-1293(1304)
398 cd00280 TRFH Telomeric Repeat 50.2 1.3E+02 0.0029 24.2 7.6 23 204-226 117-139 (200)
399 PF02259 FAT: FAT domain; Int 49.1 2E+02 0.0043 25.7 22.7 192 97-296 4-212 (352)
400 KOG1258 mRNA processing protei 49.0 2.6E+02 0.0056 27.1 28.6 103 245-352 378-489 (577)
401 KOG4279 Serine/threonine prote 48.3 3E+02 0.0066 27.7 12.8 132 92-227 161-316 (1226)
402 PF11817 Foie-gras_1: Foie gra 48.2 98 0.0021 26.4 7.4 82 284-367 161-247 (247)
403 COG2976 Uncharacterized protei 48.1 1.5E+02 0.0033 24.2 16.8 128 234-368 55-189 (207)
404 COG4003 Uncharacterized protei 47.8 71 0.0015 21.5 4.9 25 204-228 37-61 (98)
405 KOG4567 GTPase-activating prot 47.3 2E+02 0.0043 25.4 8.7 71 183-258 263-343 (370)
406 KOG4567 GTPase-activating prot 47.1 2E+02 0.0044 25.4 9.7 42 254-295 264-305 (370)
407 PRK11639 zinc uptake transcrip 45.7 1.5E+02 0.0033 23.5 7.8 62 259-321 17-78 (169)
408 COG0735 Fur Fe2+/Zn2+ uptake r 45.7 1.1E+02 0.0024 23.5 6.7 60 257-317 10-69 (145)
409 PRK08691 DNA polymerase III su 45.6 3.3E+02 0.0072 27.4 11.6 85 71-159 180-276 (709)
410 smart00386 HAT HAT (Half-A-TPR 45.2 43 0.00093 17.0 3.3 12 214-225 3-14 (33)
411 COG5108 RPO41 Mitochondrial DN 44.8 1.4E+02 0.003 29.5 8.1 91 273-366 33-131 (1117)
412 PF08311 Mad3_BUB1_I: Mad3/BUB 44.7 1.3E+02 0.0028 22.4 9.4 43 181-223 81-124 (126)
413 PF09454 Vps23_core: Vps23 cor 44.5 82 0.0018 20.3 4.8 47 161-208 6-52 (65)
414 KOG2471 TPR repeat-containing 44.3 2.6E+02 0.0056 26.6 9.4 107 242-350 249-381 (696)
415 PRK06645 DNA polymerase III su 43.3 3.1E+02 0.0068 26.4 11.7 31 166-197 261-291 (507)
416 KOG2062 26S proteasome regulat 43.1 3.6E+02 0.0079 27.1 19.8 187 71-262 39-239 (929)
417 PRK14962 DNA polymerase III su 42.9 3.1E+02 0.0066 26.2 15.2 86 165-251 246-339 (472)
418 PF09454 Vps23_core: Vps23 cor 42.8 44 0.00096 21.6 3.4 49 196-245 6-54 (65)
419 PF10366 Vps39_1: Vacuolar sor 42.6 1.3E+02 0.0028 21.8 7.4 25 201-225 42-66 (108)
420 KOG4507 Uncharacterized conser 42.3 3.4E+02 0.0073 26.5 10.4 98 176-275 620-717 (886)
421 PRK14961 DNA polymerase III su 42.1 2.7E+02 0.0059 25.4 11.1 36 161-197 244-279 (363)
422 PF04190 DUF410: Protein of un 41.8 2.3E+02 0.005 24.4 14.2 158 102-296 1-169 (260)
423 PF12862 Apc5: Anaphase-promot 41.7 1.2E+02 0.0026 21.1 7.1 55 65-119 8-69 (94)
424 smart00777 Mad3_BUB1_I Mad3/BU 41.6 1.5E+02 0.0032 22.2 7.7 74 107-187 49-123 (125)
425 PF09868 DUF2095: Uncharacteri 41.3 1.1E+02 0.0025 22.2 5.4 33 309-342 67-99 (128)
426 PF02847 MA3: MA3 domain; Int 41.3 1.3E+02 0.0029 21.6 7.0 21 239-259 8-28 (113)
427 PRK08691 DNA polymerase III su 41.2 3.9E+02 0.0085 27.0 11.6 45 250-296 181-226 (709)
428 KOG1464 COP9 signalosome, subu 40.8 2.4E+02 0.0052 24.4 16.3 185 103-289 39-252 (440)
429 PF12926 MOZART2: Mitotic-spin 40.5 1.2E+02 0.0026 20.9 7.8 42 184-225 29-70 (88)
430 PRK09462 fur ferric uptake reg 40.2 1.7E+02 0.0037 22.5 7.8 61 258-319 7-68 (148)
431 PLN03025 replication factor C 39.8 2.7E+02 0.0059 24.7 13.8 33 165-198 227-259 (319)
432 COG5187 RPN7 26S proteasome re 39.8 2.6E+02 0.0057 24.5 9.2 69 302-370 114-187 (412)
433 PRK13342 recombination factor 39.6 3.2E+02 0.0069 25.4 18.7 55 281-335 243-302 (413)
434 PF02184 HAT: HAT (Half-A-TPR) 39.4 33 0.00072 18.5 2.0 25 353-379 2-26 (32)
435 KOG2063 Vacuolar assembly/sort 39.3 4.6E+02 0.01 27.2 15.7 116 130-246 507-639 (877)
436 PF12862 Apc5: Anaphase-promot 39.3 1.3E+02 0.0028 20.9 7.2 20 347-366 50-69 (94)
437 KOG1308 Hsp70-interacting prot 39.3 25 0.00053 31.2 2.3 93 141-236 127-220 (377)
438 PRK13800 putative oxidoreducta 39.1 4.8E+02 0.01 27.4 23.7 254 45-331 625-880 (897)
439 PRK10941 hypothetical protein; 38.8 2.6E+02 0.0057 24.2 9.6 76 95-174 185-262 (269)
440 COG0790 FOG: TPR repeat, SEL1 38.7 2.6E+02 0.0057 24.2 23.7 151 103-263 53-221 (292)
441 KOG1464 COP9 signalosome, subu 38.6 2.6E+02 0.0057 24.2 14.1 155 176-330 40-218 (440)
442 PRK07003 DNA polymerase III su 38.6 4.5E+02 0.0099 26.9 11.6 45 249-295 180-225 (830)
443 cd07153 Fur_like Ferric uptake 38.6 1.1E+02 0.0024 22.1 5.6 38 281-318 13-50 (116)
444 KOG2396 HAT (Half-A-TPR) repea 38.3 3.6E+02 0.0078 25.7 22.4 213 143-366 336-558 (568)
445 PRK11639 zinc uptake transcrip 38.2 2E+02 0.0044 22.8 7.7 61 80-143 15-75 (169)
446 PF13934 ELYS: Nuclear pore co 37.7 2.5E+02 0.0053 23.6 12.0 96 140-246 90-185 (226)
447 PF09670 Cas_Cas02710: CRISPR- 37.6 3.3E+02 0.0071 25.1 11.5 58 133-192 137-198 (379)
448 PRK14958 DNA polymerase III su 36.9 4E+02 0.0086 25.8 12.0 35 260-296 192-226 (509)
449 PF09986 DUF2225: Uncharacteri 36.8 2.5E+02 0.0053 23.4 7.9 50 108-157 142-194 (214)
450 COG4003 Uncharacterized protei 36.5 1.4E+02 0.0029 20.3 4.9 25 309-333 37-61 (98)
451 KOG3364 Membrane protein invol 36.5 1.9E+02 0.0042 22.0 8.7 23 309-331 77-99 (149)
452 PRK09857 putative transposase; 36.1 3E+02 0.0066 24.2 8.8 63 202-265 210-272 (292)
453 KOG4234 TPR repeat-containing 36.1 2.5E+02 0.0054 23.2 10.4 91 241-332 103-197 (271)
454 COG2812 DnaX DNA polymerase II 36.0 4.1E+02 0.0089 25.7 10.1 89 70-162 179-279 (515)
455 PRK14956 DNA polymerase III su 36.0 4E+02 0.0086 25.5 11.8 101 250-374 183-284 (484)
456 PRK09857 putative transposase; 35.9 3.1E+02 0.0066 24.2 10.3 65 307-372 210-274 (292)
457 KOG3807 Predicted membrane pro 35.9 3.2E+02 0.007 24.4 11.4 23 204-226 281-303 (556)
458 PF01475 FUR: Ferric uptake re 35.8 98 0.0021 22.7 4.9 46 308-353 12-57 (120)
459 KOG4521 Nuclear pore complex, 35.7 5.9E+02 0.013 27.4 15.5 156 65-222 930-1126(1480)
460 PF00772 DnaB: DnaB-like helic 35.3 1.6E+02 0.0034 20.7 6.9 31 109-139 22-52 (103)
461 cd07153 Fur_like Ferric uptake 35.2 1E+02 0.0022 22.3 4.9 46 239-284 6-51 (116)
462 PF03745 DUF309: Domain of unk 34.7 1.2E+02 0.0027 19.2 5.4 15 246-260 12-26 (62)
463 PF10475 DUF2450: Protein of u 34.5 3.2E+02 0.0069 24.0 9.6 24 335-358 194-217 (291)
464 KOG1308 Hsp70-interacting prot 34.4 31 0.00068 30.6 2.2 95 174-271 125-220 (377)
465 KOG0376 Serine-threonine phosp 34.3 1E+02 0.0023 28.8 5.5 98 141-243 17-115 (476)
466 PRK10941 hypothetical protein; 34.0 3.1E+02 0.0068 23.8 10.2 72 309-381 187-259 (269)
467 PRK09462 fur ferric uptake reg 34.0 2.2E+02 0.0047 21.9 7.1 45 238-282 21-66 (148)
468 PRK14958 DNA polymerase III su 33.5 4.5E+02 0.0097 25.4 12.2 30 167-197 250-279 (509)
469 KOG0292 Vesicle coat complex C 33.4 83 0.0018 32.0 5.0 123 211-368 606-728 (1202)
470 KOG0686 COP9 signalosome, subu 33.2 4E+02 0.0086 24.7 16.5 174 129-311 152-352 (466)
471 KOG0890 Protein kinase of the 33.1 8.6E+02 0.019 28.6 21.5 150 203-362 1388-1542(2382)
472 PRK14951 DNA polymerase III su 32.9 5.1E+02 0.011 25.8 11.1 34 260-295 197-230 (618)
473 PF01475 FUR: Ferric uptake re 32.4 1.1E+02 0.0024 22.4 4.7 47 168-214 12-58 (120)
474 PF15297 CKAP2_C: Cytoskeleton 32.3 3.8E+02 0.0083 24.2 9.5 61 285-347 120-184 (353)
475 PF12926 MOZART2: Mitotic-spin 32.0 1.7E+02 0.0038 20.1 7.9 43 324-366 29-71 (88)
476 smart00804 TAP_C C-terminal do 31.7 45 0.00098 21.3 2.1 28 65-92 34-62 (63)
477 smart00638 LPD_N Lipoprotein N 31.4 5.1E+02 0.011 25.4 23.0 254 48-309 303-573 (574)
478 cd00245 Glm_e Coenzyme B12-dep 31.3 39 0.00084 31.3 2.4 184 212-404 25-228 (428)
479 KOG4642 Chaperone-dependent E3 31.1 3.4E+02 0.0073 23.2 9.8 120 101-225 20-144 (284)
480 PRK14956 DNA polymerase III su 31.0 4.8E+02 0.01 25.0 11.9 14 141-154 213-226 (484)
481 PF04762 IKI3: IKI3 family; I 30.9 6.6E+02 0.014 26.5 17.7 28 235-262 814-843 (928)
482 PF04097 Nic96: Nup93/Nic96; 30.8 5.5E+02 0.012 25.6 19.9 218 60-297 116-356 (613)
483 KOG1524 WD40 repeat-containing 30.6 4.5E+02 0.0098 25.3 8.8 56 231-292 571-626 (737)
484 PF12554 MOZART1: Mitotic-spin 30.2 1.3E+02 0.0028 18.1 4.3 25 348-372 14-38 (48)
485 PF09986 DUF2225: Uncharacteri 29.9 3.2E+02 0.007 22.7 10.6 52 144-195 141-197 (214)
486 PRK06645 DNA polymerase III su 29.7 5.2E+02 0.011 25.0 10.9 44 250-295 190-234 (507)
487 COG2405 Predicted nucleic acid 29.6 1.2E+02 0.0026 23.1 4.2 34 348-381 119-152 (157)
488 PRK05563 DNA polymerase III su 29.5 5.5E+02 0.012 25.2 11.1 44 72-117 181-224 (559)
489 PF02847 MA3: MA3 domain; Int 29.2 2.2E+02 0.0047 20.4 7.7 24 131-155 6-29 (113)
490 PF11838 ERAP1_C: ERAP1-like C 28.9 4E+02 0.0088 23.4 20.1 80 179-261 146-229 (324)
491 PRK14951 DNA polymerase III su 28.8 5.9E+02 0.013 25.3 11.8 41 74-116 188-228 (618)
492 PF10255 Paf67: RNA polymerase 27.7 5E+02 0.011 24.1 12.3 61 200-260 124-191 (404)
493 PF09670 Cas_Cas02710: CRISPR- 27.7 4.9E+02 0.011 24.0 12.0 57 205-262 138-198 (379)
494 PF02607 B12-binding_2: B12 bi 27.6 1.3E+02 0.0028 19.9 4.0 36 315-350 13-48 (79)
495 PRK13800 putative oxidoreducta 27.6 7.4E+02 0.016 26.1 26.7 248 88-366 632-880 (897)
496 KOG4279 Serine/threonine prote 27.4 6.7E+02 0.015 25.5 10.3 189 183-380 183-406 (1226)
497 PF11123 DNA_Packaging_2: DNA 27.1 1.9E+02 0.0042 19.2 4.5 33 283-316 12-44 (82)
498 KOG2659 LisH motif-containing 26.8 3.8E+02 0.0083 22.5 10.6 64 125-191 24-92 (228)
499 KOG4521 Nuclear pore complex, 26.7 8.4E+02 0.018 26.4 15.2 124 165-291 985-1125(1480)
500 PRK13341 recombination factor 26.5 7.1E+02 0.015 25.4 17.5 32 246-277 271-302 (725)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.6e-60 Score=463.44 Aligned_cols=388 Identities=16% Similarity=0.232 Sum_probs=358.2
Q ss_pred hHHHHHHhhccchhhhHhhhhhccCCCCCCCCCccchhhcccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCC
Q 015590 11 HRQSIIQSLSSASTITRKRTFALASPSASHQDSDHHAYKLNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPN 90 (404)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 90 (404)
...+...+.........+.++..+...+....+..+|..++.||..+|+.+|.+|++.|+++.|..+|+.|. ..|+.||
T Consensus 393 fd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~-~~Gl~pD 471 (1060)
T PLN03218 393 LEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQ-EAGLKAD 471 (1060)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HcCCCCC
Confidence 333444443333334444555566666777778888899999999999999999999999999999999995 5789999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHH
Q 015590 91 EALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVL 170 (404)
Q Consensus 91 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 170 (404)
..+|+.+|.+|++.|++++|.++|++|.+.+ ..|+..++..++..|++ .|++++|.++|++|.+.|+.||..+|+.+|
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k-~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI 549 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCAR-AGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999998876 45566666667777776 999999999999999999999999999999
Q ss_pred HHHHhcCcHhHHHHHHHHHHH--cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC
Q 015590 171 NLLVSAKLYGEIQGIYTSAAK--LGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN 248 (404)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 248 (404)
.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|+.|.+.|++|+..+|+.+|.+|++.|+
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence 999999999999999999986 678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 015590 249 VEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGR 328 (404)
Q Consensus 249 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (404)
+++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++
T Consensus 630 ~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhhhh
Q 015590 329 MICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETVDS 401 (404)
Q Consensus 329 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 401 (404)
|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|.+.|+.+.+..+++.|.+
T Consensus 710 M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998865
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.5e-57 Score=443.66 Aligned_cols=390 Identities=18% Similarity=0.234 Sum_probs=288.1
Q ss_pred HhHhhHHHHHHhhccchhhhHhhhhhccCCCCCCCCCccchhhcc----cCCCCCHHHHHHHHhcCCChhHHHHHHHHHh
Q 015590 7 FARNHRQSIIQSLSSASTITRKRTFALASPSASHQDSDHHAYKLN----HKDWLSPTEVLKIFSNLRDPISVISVLNQYS 82 (404)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 82 (404)
..++|..+...++.++. .+-+.++..++.+|....+..+|+.+. .||.++|+.+|.+|++.|++++|+.+|+.|.
T Consensus 456 A~~lf~~M~~~Gl~pD~-~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADC-KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45566666666664333 555666677777777777777777776 4777788888888888888888888887774
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-cCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCc
Q 015590 83 KRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEK-LCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWP 161 (404)
Q Consensus 83 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 161 (404)
..|+.||..+|+.+|.+|++.|++++|.++|++|...+ ...|+..++..++..|++ .|++++|.++|++|.+.|++|
T Consensus 535 -~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k-~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 535 -SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN-AGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred -HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCC
Confidence 45677788888888888888888888888887776532 133444455555555555 778888888888887777777
Q ss_pred cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHH
Q 015590 162 SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMH 241 (404)
Q Consensus 162 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 241 (404)
+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++.|++++|.++|++|.+.|+.||..+|+++|.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77788888888888888888888888888777778877888888888888888888888888877777788888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 015590 242 GLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPE 321 (404)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 321 (404)
+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 88888888888888888877777788888888888888888888888888888777777888888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHc----C-------------------CChHHHHHHHHHHHHCCCCCCHHhHHH
Q 015590 322 AKELVGRMICERMSPSFVSYKKLIHGLCN----Q-------------------KLVEDVDWVLKKMVQQGFVPRMGMWRE 378 (404)
Q Consensus 322 a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~ 378 (404)
|.+++++|.+.|+.||..+|++++..|.+ . +..++|..+|++|.+.|+.||..||+.
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 88888888777777888778777765432 1 123567777888887788888888888
Q ss_pred HHHhhccCCCCcchhhHHHhh
Q 015590 379 IVGCVTFGKDNRNRVYVTETV 399 (404)
Q Consensus 379 ll~~~~~~~~~~~~~~~~~~~ 399 (404)
++.++...+....+..+++.|
T Consensus 853 vL~cl~~~~~~~~~~~m~~~m 873 (1060)
T PLN03218 853 VLGCLQLPHDATLRNRLIENL 873 (1060)
T ss_pred HHHHhcccccHHHHHHHHHHh
Confidence 777666666555555555443
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.5e-56 Score=432.98 Aligned_cols=379 Identities=15% Similarity=0.204 Sum_probs=314.1
Q ss_pred HHhHhhHHHHHHhhccchhhhHhhhhhccCCCCCCCCCccchhhcccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCC
Q 015590 6 HFARNHRQSIIQSLSSASTITRKRTFALASPSASHQDSDHHAYKLNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRK 85 (404)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 85 (404)
.++++|..+...++.++ ..+.+.+...|..+|....+..+|+.++.||.++||++|.+|++.|++++|+.+|++|.+ .
T Consensus 141 ~a~~l~~~m~~~g~~~~-~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~ 218 (697)
T PLN03081 141 CVKAVYWHVESSGFEPD-QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE-D 218 (697)
T ss_pred HHHHHHHHHHHhCCCcc-hHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-h
Confidence 45788999999998654 477788889999999999999999999999999999999999999999999999999964 4
Q ss_pred CCCCCH-----------------------------------HHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHH
Q 015590 86 DYNPNE-----------------------------------ALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFF 130 (404)
Q Consensus 86 ~~~p~~-----------------------------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (404)
|+.|+. .+|+.|+.+|++.|++++|.++|+.|.. ++..++
T Consensus 219 g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~ 293 (697)
T PLN03081 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAW 293 (697)
T ss_pred CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHH
Confidence 555554 4556677778888888888888887742 233444
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 015590 131 YNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCE 210 (404)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 210 (404)
+.++..|+. .|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..+|++|+++|++
T Consensus 294 n~li~~y~~-~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 294 NSMLAGYAL-HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 455555555 8888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 015590 211 NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKL 290 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 290 (404)
+|++++|.++|++|. .||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|+.++|.++
T Consensus 373 ~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 373 WGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred CCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Confidence 888888888888886 5788888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 015590 291 LERMKGK-GCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGF 369 (404)
Q Consensus 291 ~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 369 (404)
|+.|.+. |+.|+..+|++++++|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|..+++++. ++
T Consensus 449 f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~ 523 (697)
T PLN03081 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GM 523 (697)
T ss_pred HHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CC
Confidence 8888764 88888888888888888888888888888766 467888888888888888888888888888886 56
Q ss_pred CCC-HHhHHHHHHhhccCCCCcchhhHHHhhhh
Q 015590 370 VPR-MGMWREIVGCVTFGKDNRNRVYVTETVDS 401 (404)
Q Consensus 370 ~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 401 (404)
.|+ ..+|..|+..|...|+++++..+++.|++
T Consensus 524 ~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 524 GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 665 45888888888888888888888888875
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-55 Score=438.38 Aligned_cols=383 Identities=13% Similarity=0.121 Sum_probs=298.5
Q ss_pred HHhHhhHHHHHHhhccchhhhHhhhhhccCCCCCCCCCccchhhcccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCC
Q 015590 6 HFARNHRQSIIQSLSSASTITRKRTFALASPSASHQDSDHHAYKLNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRK 85 (404)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 85 (404)
...++|.+++..+.. ......+.++..|.++|....+..+|++++.||.++||++|.+|++.|++++|+.+|++|.. .
T Consensus 104 ~a~~~~~~~~~~~~~-~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~ 181 (857)
T PLN03077 104 EGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-A 181 (857)
T ss_pred HHHHHHHHHHHcCCC-CCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-c
Confidence 456788888877764 34467788889999999999999999999999999999999999999999999999999964 5
Q ss_pred CCCCCHHHH-----------------------------------HHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHH
Q 015590 86 DYNPNEALY-----------------------------------TLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFF 130 (404)
Q Consensus 86 ~~~p~~~~~-----------------------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (404)
|+.||..|| +.+|.+|++.|+++.|.++|+.|.. ++..++
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~ 256 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISW 256 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchh
Confidence 777776666 5556666777777888888877743 233445
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 015590 131 YNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCE 210 (404)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 210 (404)
+.++..+++ .|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++
T Consensus 257 n~li~~~~~-~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 257 NAMISGYFE-NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 556666666 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 015590 211 NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKL 290 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 290 (404)
+|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++
T Consensus 336 ~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 336 LGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred cCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 999999999999997 5788999999999999999999999999999999888888887777777766666666666
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC------------------------------CC------
Q 015590 291 LERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE------------------------------RM------ 334 (404)
Q Consensus 291 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------------------------~~------ 334 (404)
++.|.+.|+.|+..+|+.||++|++.|++++|.++|++|.+. ++
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t 491 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVT 491 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhH
Confidence 666666666655555555555555555555555554444321 11
Q ss_pred -----------------------------------------------------------CCCHHHHHHHHHHHHcCCChH
Q 015590 335 -----------------------------------------------------------SPSFVSYKKLIHGLCNQKLVE 355 (404)
Q Consensus 335 -----------------------------------------------------------~p~~~~~~~li~~~~~~g~~~ 355 (404)
.||..+|+++|.+|++.|+.+
T Consensus 492 ~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHH
Confidence 234445556666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhhh
Q 015590 356 DVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETVD 400 (404)
Q Consensus 356 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 400 (404)
+|.++|++|.+.|+.||..||+.++.+|.+.|..+++..+++.|.
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666664
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.8e-55 Score=435.41 Aligned_cols=381 Identities=13% Similarity=0.139 Sum_probs=269.5
Q ss_pred HHhHhhHHHHHHhhccchhhhHhhhhhccCCCCCCCCCccchhhcccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCC
Q 015590 6 HFARNHRQSIIQSLSSASTITRKRTFALASPSASHQDSDHHAYKLNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRK 85 (404)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 85 (404)
..+++|+++++.++..+. .+.+.++..|.++|....+..+|+.++.||.++||++|.+|++.|++++|+.+|++|. ..
T Consensus 205 ~~~~~~~~~~~~g~~~~~-~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~ 282 (857)
T PLN03077 205 RGREVHAHVVRFGFELDV-DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR-EL 282 (857)
T ss_pred hHHHHHHHHHHcCCCccc-chHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH-Hc
Confidence 467899999999986544 6778888999999999999999999999999999999999999999999999999995 56
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHH
Q 015590 86 DYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKT 165 (404)
Q Consensus 86 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 165 (404)
|+.||..||+.++.+|++.|+++.|.+++..+...+ ..++..+++.++..|++ .|++++|.++|++|.. ||..+
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k-~g~~~~A~~vf~~m~~----~d~~s 356 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLS-LGSWGEAEKVFSRMET----KDAVS 356 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHh-cCCHHHHHHHHhhCCC----CCeee
Confidence 788888888888888887777777777777776655 33444444444444444 5666666665555543 44555
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCH-----------------------------------hHHHHHHHHHHh
Q 015590 166 FNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDA-----------------------------------CCLNILLKGLCE 210 (404)
Q Consensus 166 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-----------------------------------~~~~~li~~~~~ 210 (404)
|+.+|.+|++.|++++|.++|++|.+.|+.||. .+|++|+++|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 555555555555555555555555555555554 455555555555
Q ss_pred cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 015590 211 NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKL 290 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 290 (404)
+|++++|.++|++|. .+|..+|+++|.+|+++|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.++
T Consensus 437 ~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 437 CKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred cCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 555555555555554 34555555555555555555666666666653 3566666555444433333333333333
Q ss_pred HHHHhhCCC------------------------------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 015590 291 LERMKGKGC------------------------------YPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVS 340 (404)
Q Consensus 291 ~~~m~~~~~------------------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 340 (404)
+..+.+.|+ .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..|
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 333322222 45667788888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH-HCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhh
Q 015590 341 YKKLIHGLCNQKLVEDVDWVLKKMV-QQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETV 399 (404)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 399 (404)
|+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++.+|.+.|+.+++..+++.|
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 8888888888888888888888888 4588888888888888888888888888888776
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-52 Score=409.54 Aligned_cols=337 Identities=15% Similarity=0.235 Sum_probs=285.8
Q ss_pred ccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHH
Q 015590 51 NHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFF 130 (404)
Q Consensus 51 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (404)
.+++..+|+.+|..|.+.|++++|+++|++|....++.||..+|+.++.+|++.++++.+.+++..|...+ ..++..++
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~ 161 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMM 161 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHH
Confidence 45677789999999999999999999999987655678888899999998888888888888888888776 44555555
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCC--------------
Q 015590 131 YNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEI-------------- 196 (404)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-------------- 196 (404)
+.++..|++ .|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 162 n~Li~~y~k-~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 162 NRVLLMHVK-CGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHHHhc-CCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 556666665 8888888888888875 788888888888888888888888888887665544
Q ss_pred ---------------------CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 015590 197 ---------------------DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGL 255 (404)
Q Consensus 197 ---------------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 255 (404)
|..+|++|+++|+++|++++|.++|++|. ++|.++||++|.+|++.|++++|+++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 55566888899999999999999999997 57999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 015590 256 LERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMS 335 (404)
Q Consensus 256 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 335 (404)
|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.|+++|++.|++++|.++|++|. .
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~ 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----R 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 999999999999999999999999999999999999999999988888888888888888888888888888885 4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhhhh
Q 015590 336 PSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETVDS 401 (404)
Q Consensus 336 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 401 (404)
||..+|++||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..+.+..+++.|.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 778888888888888888888888888888888888888888888888888888888888877753
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2.1e-22 Score=184.88 Aligned_cols=303 Identities=17% Similarity=0.147 Sum_probs=248.9
Q ss_pred HHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCC-h-HHHHHHHHHHHhh
Q 015590 63 KIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFS-D-GFFYNVIKIYGNM 140 (404)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~ 140 (404)
..+...|++++|+..|.++.+.. +.+..++..+...+...|++++|..+++.+......... . ..+..+...+..
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~- 119 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK- 119 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-
Confidence 35567799999999999998653 456678999999999999999999999998764311111 1 223344455554
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCChHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEID----ACCLNILLKGLCENGNLEA 216 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~ 216 (404)
.|++++|+.+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 899999999999998753 34677899999999999999999999999988753332 2245677888999999999
Q ss_pred HHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 015590 217 AFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 217 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.+..+|.+.|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 4557788889999999999999999999998764433356788999999999999999999999988
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---CCChHHHHHHHHHHHHCCCCCCH
Q 015590 297 KGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCN---QKLVEDVDWVLKKMVQQGFVPRM 373 (404)
Q Consensus 297 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~ 373 (404)
. .|+...+..+...+.+.|++++|.++++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|++
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 7 467677788999999999999999999999875 6999999988887775 56899999999999998887776
Q ss_pred H
Q 015590 374 G 374 (404)
Q Consensus 374 ~ 374 (404)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 5
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=1.2e-21 Score=199.10 Aligned_cols=334 Identities=13% Similarity=0.051 Sum_probs=246.2
Q ss_pred CCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHH
Q 015590 53 KDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYN 132 (404)
Q Consensus 53 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 132 (404)
.+...+..+...+...|++++|+.+++.+.+. .+.+..+|..+...+...|++++|...++.+.+.. |.+...+.
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ 639 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---PDSALALL 639 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHH
Confidence 34455666667777777777777777777543 35566777777777777777777777777776543 23333333
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC
Q 015590 133 VIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENG 212 (404)
Q Consensus 133 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 212 (404)
.+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.++++.+.+.+ +.+...+..+...+.+.|
T Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 640 LLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCC
Confidence 33333333777888887777776643 2345677777777777788888888887777765 556667777777888888
Q ss_pred ChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015590 213 NLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLE 292 (404)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 292 (404)
++++|.+.|+.+.+.+ |+..++..+...+.+.|++++|...++++.+.... +...+..+...|...|++++|...|+
T Consensus 718 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 718 DYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 8888888888877663 44466777778888888888888888887766433 66777888888888888888888888
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 015590 293 RMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPR 372 (404)
Q Consensus 293 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 372 (404)
++.+.. +.+...+..+...+...|+ .+|+..++++.+.. +-+...+..+...+...|++++|..+++++.+.+.. +
T Consensus 795 ~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~ 870 (899)
T TIGR02917 795 TVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-A 870 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C
Confidence 888774 3467778888888888888 77888888887652 345567777888899999999999999999976543 7
Q ss_pred HHhHHHHHHhhccCCCCcchhhHHHhhh
Q 015590 373 MGMWREIVGCVTFGKDNRNRVYVTETVD 400 (404)
Q Consensus 373 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 400 (404)
..++..+..++...|+.+.+..+++.|-
T Consensus 871 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 871 AAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7888889999999999999998888763
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=8.3e-21 Score=192.92 Aligned_cols=240 Identities=14% Similarity=0.057 Sum_probs=143.0
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
.|++++|..+++++.+.. +.+...|..+..++.+.|++++|...|+.+.+.. +.+...+..+...|.+.|++++|..+
T Consensus 580 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 580 KGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555554432 2344556666666666666666666666665543 33455555666666666666666666
Q ss_pred HHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC
Q 015590 221 LDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCY 300 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 300 (404)
|+.+.+.. +.+..++..++..+...|++++|..+++.+.+.+. .+...+..+...+...|++++|.+.|+.+... .
T Consensus 658 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~ 733 (899)
T TIGR02917 658 LKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--A 733 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 66655543 44455666666666666666666666666655542 24555666666666666677776666666655 2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 015590 301 PNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIV 380 (404)
Q Consensus 301 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 380 (404)
|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|...|++++|...|+++.+.. .++..++..+.
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 811 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLA 811 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34455566666666667777777666666654 24455666666667777777777777777766542 23445555555
Q ss_pred HhhccCCC
Q 015590 381 GCVTFGKD 388 (404)
Q Consensus 381 ~~~~~~~~ 388 (404)
..+...++
T Consensus 812 ~~~~~~~~ 819 (899)
T TIGR02917 812 WLYLELKD 819 (899)
T ss_pred HHHHhcCc
Confidence 55555555
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=9.5e-21 Score=173.88 Aligned_cols=294 Identities=13% Similarity=0.086 Sum_probs=237.3
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCcc---HHHHHHHHHHH
Q 015590 97 IINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPS---VKTFNLVLNLL 173 (404)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~ 173 (404)
....+...|++++|...|.++.... |++...+..+..++...|++++|..+++.+...+..++ ...+..+...+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD---PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3445678899999999999998764 44554555555555559999999999999887542222 24678889999
Q ss_pred HhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCc----HHHHHHHHHHHHHcCCH
Q 015590 174 VSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPN----VRTYSTLMHGLCEKGNV 249 (404)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~ 249 (404)
.+.|++++|..+|+.+.+.. +.+..++..++..|.+.|++++|.+.++.+.+.+..++ ...|..+...+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 99999999999999998764 56788999999999999999999999999987652222 22456778888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 015590 250 EEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 250 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 329 (404)
++|...|+++.+.... +...+..+...+.+.|++++|.++|+++.+.+......++..++.+|.+.|++++|.+.++++
T Consensus 197 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999876422 466788889999999999999999999997643323467889999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhcc---CCCCcchhhHHHhh
Q 015590 330 ICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTF---GKDNRNRVYVTETV 399 (404)
Q Consensus 330 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~ 399 (404)
.+. .|+...+..+...+.+.|++++|..+++++.+ ..|+..+++.++..+.. .|+.+++..+++.+
T Consensus 276 ~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 276 LEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 875 57777778899999999999999999999985 47999999988886653 34666666655544
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.7e-17 Score=160.28 Aligned_cols=326 Identities=9% Similarity=-0.017 Sum_probs=173.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHh
Q 015590 60 EVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGN 139 (404)
Q Consensus 60 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (404)
.++..+.+.|+++.|+.+++..+... +-+...+..++.+....|++++|...++.+.... |.+...+..+...+.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~---P~~~~a~~~la~~l~ 121 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN---VCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHH
Confidence 44555566666666666666665432 3334444455555556666666666666665443 333333333333333
Q ss_pred hcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 015590 140 MAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 140 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 219 (404)
..|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHH
Confidence 3666666666666665532 1234455556666666666666666666555443 2222222222 23555666666666
Q ss_pred HHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH----HHHHHHHHh
Q 015590 220 VLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEE----GMKLLERMK 295 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~ 295 (404)
.++.+.+....++...+..+...+.+.|++++|+..|++..+.... +...+..+...+...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 6666554432223333344455566666666666666666554322 34555556666666666654 566666665
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHh
Q 015590 296 GKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGM 375 (404)
Q Consensus 296 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 375 (404)
+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++.+.+. .|+...
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~ 353 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSK 353 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchH
Confidence 542 1134455666666666666666666666665532 223344555556666666666666666666532 333322
Q ss_pred HH-HHHHhhccCCCCcchhhHHHh
Q 015590 376 WR-EIVGCVTFGKDNRNRVYVTET 398 (404)
Q Consensus 376 ~~-~ll~~~~~~~~~~~~~~~~~~ 398 (404)
+. .+..++...|+.+++...++.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22 223344555555555555444
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=3.4e-17 Score=158.14 Aligned_cols=319 Identities=10% Similarity=0.019 Sum_probs=247.6
Q ss_pred CCCCCCCccchhhc---ccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHH
Q 015590 37 SASHQDSDHHAYKL---NHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDI 113 (404)
Q Consensus 37 ~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 113 (404)
.|....+..+...+ .+.+...+..+..+....|+++.|+..|+++.+.. +.+...+..+...+...|++++|...
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 45555555554433 22234455566677778999999999999998754 55677888899999999999999999
Q ss_pred HHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcC
Q 015590 114 MQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLG 193 (404)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 193 (404)
++.+.... |.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...++.+.+..
T Consensus 133 l~~Al~l~---P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 133 AEQAWLAF---SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHhC---CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 99987654 44444454444445559999999999998866542 223334333 34788999999999999988765
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHH
Q 015590 194 VEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEE----AFGLLERMESEGIDADTV 269 (404)
Q Consensus 194 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~ 269 (404)
..++......+...+.+.|++++|...++...+.. +.+...+..+...|.+.|++++ |...|++..+.... +..
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~ 285 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVR 285 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHH
Confidence 33445555666788999999999999999998876 5677888899999999999986 89999999877433 667
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 015590 270 TFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFV-SYKKLIHGL 348 (404)
Q Consensus 270 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~ 348 (404)
.+..+...+...|++++|...+++...... -+...+..+..++.+.|++++|.+.++.+.+. .|+.. .+..+..++
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al 362 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAAL 362 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 889999999999999999999999998742 24567778889999999999999999999875 45543 344456788
Q ss_pred HcCCChHHHHHHHHHHHHC
Q 015590 349 CNQKLVEDVDWVLKKMVQQ 367 (404)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~ 367 (404)
...|+.++|...|++..+.
T Consensus 363 ~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 363 LQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHCCCHHHHHHHHHHHHHh
Confidence 9999999999999998865
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=4.9e-16 Score=150.39 Aligned_cols=255 Identities=15% Similarity=-0.017 Sum_probs=190.2
Q ss_pred CCHHHHHHHHhhcccCC-CCc-cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 015590 142 GRISKAIETLFDMPSYN-CWP-SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 142 g~~~~A~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 219 (404)
+++++|.+.|++..+.+ ..| +...|+.+...+...|++++|+..++...+.. +.+...|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 56777778887776643 223 34567777788888899999999999888764 3446678888888889999999999
Q ss_pred HHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC
Q 015590 220 VLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGC 299 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 299 (404)
.|+...+.. +.+...|..+...+...|++++|...|++..+.... +...+..+...+.+.|++++|+..|++..+..
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 998887765 556788888888899999999999999988876433 56677778888889999999999999888762
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH
Q 015590 300 YPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSF------VSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRM 373 (404)
Q Consensus 300 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 373 (404)
+-+...++.+...+...|++++|++.|++..+.....+. ..++..+..+...|++++|.+++++..+. .|+.
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~ 541 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPEC 541 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 224678888888899999999999999998765211111 11222223344468999999999988754 3544
Q ss_pred -HhHHHHHHhhccCCCCcchhhHHHhhhhh
Q 015590 374 -GMWREIVGCVTFGKDNRNRVYVTETVDSL 402 (404)
Q Consensus 374 -~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
..+..+...+...|+.+.+...++...++
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35777778888889988888877766544
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=3.3e-15 Score=144.67 Aligned_cols=297 Identities=13% Similarity=0.037 Sum_probs=231.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCCh-HHHHHHHHHHH
Q 015590 60 EVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSD-GFFYNVIKIYG 138 (404)
Q Consensus 60 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 138 (404)
..-..+.+.|++++|+..|++.++ ..|+...|..+..+|.+.|++++|.+.++...+.. |+. ..+...-..+.
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~---p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD---PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHH
Confidence 455678888999999999999975 36788899999999999999999999999987654 333 34445555555
Q ss_pred hhcCCHHHHHHHHhhcccCC-C---------------------------Cc-cHHHHHHHHH------------------
Q 015590 139 NMAGRISKAIETLFDMPSYN-C---------------------------WP-SVKTFNLVLN------------------ 171 (404)
Q Consensus 139 ~~~g~~~~A~~~~~~m~~~~-~---------------------------~p-~~~~~~~ll~------------------ 171 (404)
. .|++++|+.-|......+ . .| +...+..+..
T Consensus 206 ~-lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 206 G-LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred H-cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 5 999999987664332111 0 00 0000000000
Q ss_pred ------------HH------HhcCcHhHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCC
Q 015590 172 ------------LL------VSAKLYGEIQGIYTSAAKLG--VEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEP 231 (404)
Q Consensus 172 ------------~~------~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 231 (404)
.. ...+++++|.+.|+...+.+ .+.....+..+...+...|++++|...|+...+.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 00 11257889999999998765 23355678888899999999999999999998764 44
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 015590 232 NVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLY 311 (404)
Q Consensus 232 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 311 (404)
+..+|..+...+...|++++|...|++..+.... +...|..+...+...|++++|...|++..+.. +.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 5678899999999999999999999999876433 57788999999999999999999999999874 225677788888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 015590 312 GLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ 367 (404)
Q Consensus 312 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (404)
.+.+.|++++|+..+++..+. .+.+...|+.+..++...|++++|.+.|++..+.
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 999999999999999999875 3445788899999999999999999999998854
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.79 E-value=2e-15 Score=155.56 Aligned_cols=335 Identities=9% Similarity=0.039 Sum_probs=177.1
Q ss_pred CCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHH------------HHHHHHHhcCCchHHHHHHHHHHhcc
Q 015590 54 DWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYT------------LIINKLAQAKRFDAIEDIMQRIKVEK 121 (404)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~ 121 (404)
+...+..+-..+.+.|++++|+..|++.++..+-.+....|. .....+.+.|++++|+..|+++....
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 444555566666666666666666666654322111111111 11234455666666666666655443
Q ss_pred cCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCcc-HHHHHHH-------------------------------
Q 015590 122 LCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPS-VKTFNLV------------------------------- 169 (404)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l------------------------------- 169 (404)
|.+...+..+...+...|++++|++.|++..+.. |+ ...+..+
T Consensus 382 ---P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 382 ---NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2232233323333333667777777776665532 22 2222222
Q ss_pred -----------HHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHH
Q 015590 170 -----------LNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYST 238 (404)
Q Consensus 170 -----------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 238 (404)
...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++++.+.. +.+...+..
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a 534 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYA 534 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 222334566666666666666553 3345555666666677777777777766665432 223333322
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC---------------------------------------CCCCCHHHHHHHHHHHH
Q 015590 239 LMHGLCEKGNVEEAFGLLERMESE---------------------------------------GIDADTVTFNILISGLR 279 (404)
Q Consensus 239 li~~~~~~~~~~~A~~~~~~m~~~---------------------------------------~~~p~~~~~~~li~~~~ 279 (404)
+...+.+.++.++|+..++.+... ..+.+...+..+...+.
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~ 614 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQ 614 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 222333334444443333322110 01223334455666667
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 015590 280 KQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDW 359 (404)
Q Consensus 280 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 359 (404)
+.|+.++|+..|++..+.. +.+...+..+...+...|++++|++.++...+.. +.+...+..+..++...|++++|.+
T Consensus 615 ~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHH
Confidence 7777777777777777653 2245667777777777777777777777665431 2234455556667777777777777
Q ss_pred HHHHHHHCCC--CC---CHHhHHHHHHhhccCCCCcchhhHHH
Q 015590 360 VLKKMVQQGF--VP---RMGMWREIVGCVTFGKDNRNRVYVTE 397 (404)
Q Consensus 360 ~~~~m~~~~~--~p---~~~~~~~ll~~~~~~~~~~~~~~~~~ 397 (404)
+++++....- .| +...+..+-..+...|+++.+...++
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777765421 11 11234444455556666666655544
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=9.8e-15 Score=150.55 Aligned_cols=330 Identities=10% Similarity=-0.000 Sum_probs=230.1
Q ss_pred HHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHH---------HHH
Q 015590 62 LKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGF---------FYN 132 (404)
Q Consensus 62 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------~~~ 132 (404)
-..+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|++..+.....+.... ++.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 346677899999999999998753 457889999999999999999999999998765421111111 111
Q ss_pred H---HHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHH-----
Q 015590 133 V---IKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNIL----- 204 (404)
Q Consensus 133 ~---l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----- 204 (404)
. -..+. ..|++++|+..|++..+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+
T Consensus 354 ~~~~g~~~~-~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 354 LIQQGDAAL-KANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 1 12233 4899999999999998865 2355678888999999999999999999998764 3333333322
Q ss_pred -------------------------------------HHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcC
Q 015590 205 -------------------------------------LKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKG 247 (404)
Q Consensus 205 -------------------------------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 247 (404)
...+...|++++|.+.|++..+.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 234456788888888888887764 445667777888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC------------------------------
Q 015590 248 NVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK------------------------------ 297 (404)
Q Consensus 248 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------------ 297 (404)
++++|...|+++.+.... +...+..+...+...|+.++|...++.+...
T Consensus 510 ~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 888888888888765322 2222222222333344444444433322110
Q ss_pred ---------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 015590 298 ---------GCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQG 368 (404)
Q Consensus 298 ---------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 368 (404)
..+.+...+..+...+.+.|+.++|++.|++..+.. +.+...+..+...+...|++++|.+.++...+
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~-- 665 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA-- 665 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--
Confidence 012344566677778888899999999999888753 44677888888999999999999999998774
Q ss_pred CCCC-HHhHHHHHHhhccCCCCcchhhHHHhhhh
Q 015590 369 FVPR-MGMWREIVGCVTFGKDNRNRVYVTETVDS 401 (404)
Q Consensus 369 ~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 401 (404)
..|+ ...+..+-.++...|+.+++..+++.+.+
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 4444 33455556677778888888877777644
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=7.9e-16 Score=137.54 Aligned_cols=325 Identities=14% Similarity=0.108 Sum_probs=189.2
Q ss_pred CCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccC-----------
Q 015590 55 WLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLC----------- 123 (404)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----------- 123 (404)
..+|..+-..+-..|+.++|+..|+.+++.. +.....|..+..++...|+.+.|.+.|....+....
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 3467778888888889999999999887653 334667777777777777777777777665443200
Q ss_pred --------------------CCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCcc-HHHHHHHHHHHHhcCcHhHH
Q 015590 124 --------------------RFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLYGEI 182 (404)
Q Consensus 124 --------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a 182 (404)
.|.-.+.|+-+.......|+...|++.|++....+ |+ ...|-.|...|...+.+++|
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHH
Confidence 01111122222222233788888888888877744 55 34777777777777777777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 183 QGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 183 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
...|....... +....++..+...|...|.+|.|...+++..+.. +.=...|+.|..++-..|++.+|.+.|.+....
T Consensus 272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 77776665443 3334444444444455555555555555444432 222344555555555555555555555444432
Q ss_pred CC--------------------------------CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCCh-hhHHH
Q 015590 263 GI--------------------------------DAD-TVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNS-ASYQE 308 (404)
Q Consensus 263 ~~--------------------------------~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ 308 (404)
.. .|. ...++.|...|-+.|+.++|...|++..+- .|+- ..|+.
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~N 427 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSN 427 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHh
Confidence 11 111 233455666666666666666666666554 4442 45666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHhhccC
Q 015590 309 VLYGLLDKKRFPEAKELVGRMICERMSPSF-VSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMG-MWREIVGCVTFG 386 (404)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~ 386 (404)
+-..|-..|+++.|.+.+.+.+.. .|.. ..++.|...|...|++.+|++-+++.. .++||.. .|--++.+.---
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHHHHHHHHH
Confidence 666666666666666666666542 3433 456677777777888888888887777 4556543 344444444333
Q ss_pred CCCcc
Q 015590 387 KDNRN 391 (404)
Q Consensus 387 ~~~~~ 391 (404)
.+|.+
T Consensus 504 cdw~D 508 (966)
T KOG4626|consen 504 CDWTD 508 (966)
T ss_pred hcccc
Confidence 34433
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=3.4e-14 Score=140.29 Aligned_cols=332 Identities=12% Similarity=0.031 Sum_probs=205.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 015590 58 PTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIY 137 (404)
Q Consensus 58 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (404)
+..+...+.+.|++++|+.+|++.++.. +.+...+..+...+...|++++|...++.+.... |.+.. +..+...
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~---P~~~~-~~~la~~ 125 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA---PDKAN-LLALAYV 125 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHH-HHHHHHH
Confidence 4455555555555555555555554432 3334444455555555555555555555554432 22222 3333333
Q ss_pred HhhcCCHHHHHHHHhhcccCCCCcc-HHHHHHHHHHHHhcCcH-------------------------------------
Q 015590 138 GNMAGRISKAIETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLY------------------------------------- 179 (404)
Q Consensus 138 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~------------------------------------- 179 (404)
+...|+.++|+..++++.+.. |+ ...+..+...+...+..
T Consensus 126 l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 333555555555555555433 22 22333333333333333
Q ss_pred ---------hHHHHHHHHHHHc-CCCCCHh-HH----HHHHHHHHhcCChHHHHHHHHHchhCCCC-CcHHHHHHHHHHH
Q 015590 180 ---------GEIQGIYTSAAKL-GVEIDAC-CL----NILLKGLCENGNLEAAFYVLDEFPKQNCE-PNVRTYSTLMHGL 243 (404)
Q Consensus 180 ---------~~a~~~~~~~~~~-g~~~~~~-~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 243 (404)
++|++.++.+.+. ...|+.. .+ ...+..+...|++++|...|+.+.+.+.+ |+. .-..+...|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 4455555555543 1122221 11 11133456779999999999999887522 221 222257789
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC-----------CCCh---hhH
Q 015590 244 CEKGNVEEAFGLLERMESEGIDA---DTVTFNILISGLRKQGKVEEGMKLLERMKGKGC-----------YPNS---ASY 306 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~~---~~~ 306 (404)
...|++++|+..|+++.+..... .......+..++...|++++|.++++.+..... .|+. ..+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999987653221 124466677788999999999999999887621 1231 244
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HhHHHHHHhhcc
Q 015590 307 QEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRM-GMWREIVGCVTF 385 (404)
Q Consensus 307 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~ 385 (404)
..+...+...|+.++|++.++++... .+.+...+..+...+...|++++|++.+++..+ +.|+. ..+......+..
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHH
Confidence 56777888999999999999999876 355678888899999999999999999999984 55764 445555556777
Q ss_pred CCCCcchhhHHHhhhh
Q 015590 386 GKDNRNRVYVTETVDS 401 (404)
Q Consensus 386 ~~~~~~~~~~~~~~~~ 401 (404)
.++++.+..+.+.+.+
T Consensus 440 ~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 440 LQEWRQMDVLTDDVVA 455 (765)
T ss_pred hCCHHHHHHHHHHHHH
Confidence 8888888888776643
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.74 E-value=1.4e-15 Score=136.05 Aligned_cols=294 Identities=14% Similarity=0.068 Sum_probs=186.9
Q ss_pred HHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChH-HHHHHHHHHHhh
Q 015590 62 LKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDG-FFYNVIKIYGNM 140 (404)
Q Consensus 62 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 140 (404)
-.++.+..+.+....--....+. .+.-.++|+.+...+-..|++++|..+++.+.+.+ |... .+.++..++..
T Consensus 89 ~ai~~q~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~---p~fida~inla~al~~- 162 (966)
T KOG4626|consen 89 SAIFFQGSRLDKSSAGSLLAIRK--NPQGAEAYSNLANILKERGQLQDALALYRAAIELK---PKFIDAYINLAAALVT- 162 (966)
T ss_pred hhhhhcccchhhhhhhhhhhhhc--cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC---chhhHHHhhHHHHHHh-
Confidence 35677777777666555555443 35668899999999999999999999999998765 3333 33334444444
Q ss_pred cCCHHHHHHHHhhcccCCCCccHH-----------------------------------HHHHHHHHHHhcCcHhHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVK-----------------------------------TFNLVLNLLVSAKLYGEIQGI 185 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~-----------------------------------~~~~ll~~~~~~~~~~~a~~~ 185 (404)
.|+.+.|.+.|.+..+.+ |+.. .|..|...+-..|+...|++.
T Consensus 163 ~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 163 QGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred cCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHH
Confidence 677777777766655533 4332 334444444455555566666
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 015590 186 YTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGID 265 (404)
Q Consensus 186 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 265 (404)
|++..+.. +.-...|-.|.+.|...+.++.|...+....... +...+.+..+.-.|...|+.+-|++.|++..+. .
T Consensus 241 y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~ 316 (966)
T KOG4626|consen 241 YEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--Q 316 (966)
T ss_pred HHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--C
Confidence 66555543 2224456666666666666666666666554442 334556666666677777777777777777665 3
Q ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHH
Q 015590 266 AD-TVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSF-VSYKK 343 (404)
Q Consensus 266 p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ 343 (404)
|+ ...|+.|..++-..|++.+|.+.|....... .-.....+.|...+...|.+++|..+|....+ +.|.. ..++.
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nN 393 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNN 393 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhh
Confidence 33 4577888888888888888888888777652 11345566666677777777777777766655 33433 35566
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 015590 344 LIHGLCNQKLVEDVDWVLKKMVQQGFVPR 372 (404)
Q Consensus 344 li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 372 (404)
|...|-.+|++++|..-+++.+ .+.|+
T Consensus 394 La~i~kqqgnl~~Ai~~Ykeal--rI~P~ 420 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEAL--RIKPT 420 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHH--hcCch
Confidence 6666666677777766666665 45554
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=3.8e-13 Score=131.01 Aligned_cols=192 Identities=11% Similarity=0.070 Sum_probs=109.0
Q ss_pred HHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHH
Q 015590 205 LKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEG-----IDADTVTFNILISGLR 279 (404)
Q Consensus 205 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~ 279 (404)
+-++...|++.++.+.|+.+...|.+....+--++.++|...+++++|+.+|+.+.... ..++......|.-+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 33445556666666666666665544344455666666777777777777776664432 1122233455666666
Q ss_pred cCCCHHHHHHHHHHHhhCCC-----------CCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015590 280 KQGKVEEGMKLLERMKGKGC-----------YPNS---ASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLI 345 (404)
Q Consensus 280 ~~g~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 345 (404)
..+++++|..+++++.+... .||+ ..+..++..+...|+..+|++.++++... -+-|......+.
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A 457 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALA 457 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 67777777777776665311 1111 12233455566667777777777776554 244666666666
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHhhccCCCCcchhhHHHhh
Q 015590 346 HGLCNQKLVEDVDWVLKKMVQQGFVPRMG-MWREIVGCVTFGKDNRNRVYVTETV 399 (404)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~ 399 (404)
+.+...|.+.+|++.++... .+.|+.. +......++..-++++.+..+.+.+
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~--~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVE--SLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHh--hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 77777777777777775555 3345432 3334444555556666665555433
No 21
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=8.8e-14 Score=115.26 Aligned_cols=291 Identities=14% Similarity=0.125 Sum_probs=227.5
Q ss_pred CCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCC--hHHHHHHHHHHHhhcCCHH
Q 015590 68 LRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFS--DGFFYNVIKIYGNMAGRIS 145 (404)
Q Consensus 68 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 145 (404)
++++++|.+.|-+|.+.+ +.+.++..+|.+.|.+.|..|+|+++++.+..+...... ......+-..|.. .|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~-aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA-AGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH-hhhhh
Confidence 368999999999998643 556677788999999999999999999998765411111 1234456677777 99999
Q ss_pred HHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCChHHHHHHH
Q 015590 146 KAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEID----ACCLNILLKGLCENGNLEAAFYVL 221 (404)
Q Consensus 146 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~ 221 (404)
.|.++|..+.+.|. --......|+..|-...+|++|+++-+++.+.+-.+. ...|.-|...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999998652 3345778899999999999999999999998875544 235677777778889999999999
Q ss_pred HHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 015590 222 DEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYP 301 (404)
Q Consensus 222 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 301 (404)
....+.+ +..+..--.+.+.+...|++++|.+.++...+.+..--..+...|..+|.+.|+.++....+.++.+.. +
T Consensus 204 ~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 204 KKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 9988775 555566666778899999999999999999998665556778899999999999999999999999883 3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---CCChHHHHHHHHHHHHC
Q 015590 302 NSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCN---QKLVEDVDWVLKKMVQQ 367 (404)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~ 367 (404)
....-..+-.......-.+.|..++.+-... +|+...+..+|+.-.. .|...+-..+++.|+..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3344444444444555567777776666554 7999999999987654 45577778888888765
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=4.3e-13 Score=132.58 Aligned_cols=331 Identities=13% Similarity=0.116 Sum_probs=236.6
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChH-HHHHHHHHH
Q 015590 59 TEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDG-FFYNVIKIY 137 (404)
Q Consensus 59 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 137 (404)
...+.+....|+.++|+.++..+.... +.+...+..+..++.+.|++++|.++++...... |.+. ....+...+
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~l 93 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE---PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 345667888999999999999996422 5566679999999999999999999999987654 3333 344444445
Q ss_pred HhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 015590 138 GNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAA 217 (404)
Q Consensus 138 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a 217 (404)
.. .|++++|+..+++..+.. +.+.. +..+...+...|+.++|+..++++.+.. |.+...+..+..++...|..+.|
T Consensus 94 ~~-~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 94 AD-AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HH-CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 54 999999999999998764 23455 8888889999999999999999999875 44566666677777777776665
Q ss_pred HHHHHH----------------------------------------------chhC-CCCCcHH-HHH----HHHHHHHH
Q 015590 218 FYVLDE----------------------------------------------FPKQ-NCEPNVR-TYS----TLMHGLCE 245 (404)
Q Consensus 218 ~~~~~~----------------------------------------------~~~~-~~~~~~~-~~~----~li~~~~~ 245 (404)
.+.++. +.+. .-.|+.. .+. ..+.++..
T Consensus 170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 555543 2211 0011111 111 11334567
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCChhH
Q 015590 246 KGNVEEAFGLLERMESEGID-ADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYP---NSASYQEVLYGLLDKKRFPE 321 (404)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~ 321 (404)
.|++++|+..|+.+.+.+.. |+. .-..+...|...|++++|+..|+++....... .......+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 78999999999999887532 332 22225678889999999999999987653111 12456667778889999999
Q ss_pred HHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHhHHHHHHhhccC
Q 015590 322 AKELVGRMICERM-----------SPS---FVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPR-MGMWREIVGCVTFG 386 (404)
Q Consensus 322 a~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~ 386 (404)
|.+.++.+.+... .|+ ...+..+...+...|+.++|+++++++... .|+ ...+..+...+...
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 9999999886521 123 234556677888999999999999998854 343 45666677777788
Q ss_pred CCCcchhhHHHhhhh
Q 015590 387 KDNRNRVYVTETVDS 401 (404)
Q Consensus 387 ~~~~~~~~~~~~~~~ 401 (404)
|+.+.+...++...+
T Consensus 407 g~~~~A~~~l~~al~ 421 (765)
T PRK10049 407 GWPRAAENELKKAEV 421 (765)
T ss_pred CCHHHHHHHHHHHHh
Confidence 888888888776544
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=4.3e-16 Score=135.93 Aligned_cols=262 Identities=13% Similarity=0.114 Sum_probs=101.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHh
Q 015590 96 LIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVS 175 (404)
Q Consensus 96 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 175 (404)
.+...+.+.|++++|.++++...... .++++..+|.++...+...++++.|.+.++++...+. -++..+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-cccccccccccc-cc
Confidence 45677778888888888885432221 1355667777777666667888888888888877552 244566666666 67
Q ss_pred cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCC-CCCcHHHHHHHHHHHHHcCCHHHHHH
Q 015590 176 AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQN-CEPNVRTYSTLMHGLCEKGNVEEAFG 254 (404)
Q Consensus 176 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~ 254 (404)
.+++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|+.
T Consensus 90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888776554 3456667778888888888888888888866432 34567778888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 015590 255 LLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERM 334 (404)
Q Consensus 255 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 334 (404)
.+++..+..+. |....+.++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|+..+++..+. .
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~ 244 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N 244 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-c
Confidence 88888776332 46677778888888888888888887776653 335567778888888888888888888888765 2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 335 SPSFVSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 335 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
+.|+.....+.+++...|+.++|.++..+..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4477777788888888888888888877654
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=9.3e-13 Score=120.29 Aligned_cols=284 Identities=12% Similarity=0.021 Sum_probs=200.1
Q ss_pred CCChhHHHHHHHHHhhCCCCCCCHHHHHHH-HHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHH-HHHHHHhhcCCHH
Q 015590 68 LRDPISVISVLNQYSKRKDYNPNEALYTLI-INKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYN-VIKIYGNMAGRIS 145 (404)
Q Consensus 68 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~ 145 (404)
.|+++.|.+......+. .+++..+..+ ..+..+.|+++.|.+.+..+.+.. +++..... .........|+++
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~---~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA---DNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHCCCHH
Confidence 48888888777766432 2223333333 444478888999999998886543 33332222 2233444488999
Q ss_pred HHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCH-------hHHHHHHHHHHhcCChHHHH
Q 015590 146 KAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDA-------CCLNILLKGLCENGNLEAAF 218 (404)
Q Consensus 146 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~ 218 (404)
.|.+.++++.+.+ +-++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999998888765 234567788888888889999999999988887644222 13334444445556667777
Q ss_pred HHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 015590 219 YVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKG 298 (404)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 298 (404)
++++.+.+.- +.+......+...+...|+.++|..++++..+. .||... .++.+....++.+++.+..+...+..
T Consensus 250 ~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC
Confidence 7777776542 557778888888888999999999998888774 344421 23444445688888888888888773
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 299 CYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 299 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
+-|...+.++...+.+.+++++|.+.|+...+. .|+...+..+..++.+.|+.++|.+++++-..
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 224556778888888889999999999988874 68888888888889999999999888887653
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=3.6e-13 Score=115.71 Aligned_cols=324 Identities=12% Similarity=0.114 Sum_probs=161.0
Q ss_pred CCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH--hcCCchHH-HHHHHHHHhcc----------
Q 015590 55 WLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLA--QAKRFDAI-EDIMQRIKVEK---------- 121 (404)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~~~a-~~~~~~~~~~~---------- 121 (404)
+.+=|.++...+ .|...++.-+|+.| +..|++.+...-..|+...+ ...++--| ++.|-.|...+
T Consensus 116 V~~E~nL~kmIS-~~EvKDs~ilY~~m-~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 116 VETENNLLKMIS-SREVKDSCILYERM-RSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hcchhHHHHHHh-hcccchhHHHHHHH-HhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 445566666544 57888899999999 56677777777666655433 33332222 12222222111
Q ss_pred --------cCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcC
Q 015590 122 --------LCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLG 193 (404)
Q Consensus 122 --------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 193 (404)
..+.++.++..++.++|+ --..+.|.+++++-.....+.+..+||.+|.+-.- ....++..+|....
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K-~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCK-FSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQK 268 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHH-HHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhh
Confidence 012233444445555554 45555555555555554444555555555543221 12244555555555
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHH----HHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----CCC
Q 015590 194 VEIDACCLNILLKGLCENGNLEAA----FYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEE-AFGLLERMES----EGI 264 (404)
Q Consensus 194 ~~~~~~~~~~li~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~----~~~ 264 (404)
+.||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+.+.++..+ |..++.++.. +.+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 555555555555555555554433 3344455555555555555555555555555432 3333333322 112
Q ss_pred CC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC----CCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 015590 265 DA----DTVTFNILISGLRKQGKVEEGMKLLERMKGKG----CYPNS---ASYQEVLYGLLDKKRFPEAKELVGRMICER 333 (404)
Q Consensus 265 ~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 333 (404)
+| |...|...+..|.+..+.+-|.++..-+.... +.|+. .-|..+....++....+.-...++.|.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 22 22334444555555555555555544443321 11221 123344444455555555555555555444
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhcc
Q 015590 334 MSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTF 385 (404)
Q Consensus 334 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 385 (404)
+-|+..+..-++++....|.++-..+++..++..|..-+...-..++.-++.
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 4455555555555555566666666666666555554444444444444443
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=8.1e-13 Score=120.68 Aligned_cols=282 Identities=7% Similarity=0.018 Sum_probs=217.1
Q ss_pred hcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHH--HHHHHHHhcCcHh
Q 015590 103 QAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFN--LVLNLLVSAKLYG 180 (404)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~ 180 (404)
..|+++.|++......... ..+...+.+......+.|+++.|.+.|.++.+.. |+..... .....+...|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHH
Confidence 3699999998888765432 2233344444444356999999999999998754 6654333 3356788999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcH-------HHHHHHHHHHHHcCCHHHHH
Q 015590 181 EIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNV-------RTYSTLMHGLCEKGNVEEAF 253 (404)
Q Consensus 181 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~ 253 (404)
.|.+.++.+.+.. |-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999886 667889999999999999999999999999987644322 23344444444555666667
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 015590 254 GLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICER 333 (404)
Q Consensus 254 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 333 (404)
++++.+... .+.++.....+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+.
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~- 323 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ- 323 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-
Confidence 777666443 2347778889999999999999999999999885 455522 2344445569999999999999876
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHh
Q 015590 334 MSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTET 398 (404)
Q Consensus 334 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 398 (404)
.+-|...+..+...|.+.|++++|.+.|+... ...|+..++..+-..+...|+.+.+...++.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al--~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL--KQRPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566678889999999999999999999999 5679999999999999999998888777664
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.8e-12 Score=111.60 Aligned_cols=341 Identities=12% Similarity=0.084 Sum_probs=207.2
Q ss_pred cccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHH
Q 015590 50 LNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGF 129 (404)
Q Consensus 50 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 129 (404)
+-+.+..++..+|.++++--..+.|.+++.+... ...+.+..+||.+|.+-.-.- ..++..+|.... ..|+-.+
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqk-m~Pnl~T 275 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYSV----GKKLVAEMISQK-MTPNLFT 275 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhh-cCCchHh
Confidence 3344556777777777777777777777777643 334667777777776544322 256666666554 3344444
Q ss_pred HHHHHHHHHhhcCCHHHH----HHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhH-HHHHHHHHHH----cCC----CC
Q 015590 130 FYNVIKIYGNMAGRISKA----IETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGE-IQGIYTSAAK----LGV----EI 196 (404)
Q Consensus 130 ~~~~l~~~~~~~g~~~~A----~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~----~~ 196 (404)
++.++.+..+ .|+++.| ++++.+|++.|+.|+..+|..+|..+.+.++..+ +..+..++.. ..+ +.
T Consensus 276 fNalL~c~ak-fg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 276 FNALLSCAAK-FGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred HHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 4444444444 6766543 4556667777777777777777777777666543 3333333332 112 22
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHchhCC----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 015590 197 DACCLNILLKGLCENGNLEAAFYVLDEFPKQN----CEPN---VRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTV 269 (404)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 269 (404)
|...|..-++.|.+..+.+.|.++..-+.... +.|+ ..-|..+....++....+.-...|+.|.-+-.-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 44556666777777777777776655443210 1222 2235566667777777777777888887776777888
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-Ch--------h-----HHHHHH-------HH
Q 015590 270 TFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKK-RF--------P-----EAKELV-------GR 328 (404)
Q Consensus 270 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------~-----~a~~~~-------~~ 328 (404)
+...++++..-.|.++-.-++|.++...|...+...-.-++..+++.. .. . -|..++ .+
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 888888888888888888888888887765444444444444444433 11 0 011111 12
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCCCHHhHH---HHHHhhccCCCCcchhhHHHhh
Q 015590 329 MICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQG-FVPRMGMWR---EIVGCVTFGKDNRNRVYVTETV 399 (404)
Q Consensus 329 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~---~ll~~~~~~~~~~~~~~~~~~~ 399 (404)
+.. ........+.+.-.+.+.|..++|.+++..+.+.+ -.|.....+ .++.+....+++-.+..+.+.+
T Consensus 515 ~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 515 QRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 222 23445566777778889999999999999997663 334444555 5555666667776666666654
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=1.1e-15 Score=133.26 Aligned_cols=262 Identities=14% Similarity=0.108 Sum_probs=115.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhh
Q 015590 61 VLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNM 140 (404)
Q Consensus 61 li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (404)
+-..+.+.|++++|+++++.......-+.+..-|..+...+...++++.|.+.++.+...+. ........+..+..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~---~~~~~~~~l~~l~~- 89 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK---ANPQDYERLIQLLQ- 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccc-
Confidence 35677788999999999965533321133445556666677788999999999999976652 22223333333344
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCChHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLG-VEIDACCLNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~ 219 (404)
.+++++|.+++.+..+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999998876643 667778889999999999999999999987543 35678889999999999999999999
Q ss_pred HHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC
Q 015590 220 VLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGC 299 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 299 (404)
.+++..+.. |.|....+.++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|...|++..+..
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 999998875 4568889999999999999999999998887664 3466778899999999999999999999998863
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 300 YPNSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 300 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
+.|+.....+.+++...|+.++|.++..+..+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 33788888999999999999999999887653
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=1.1e-12 Score=120.57 Aligned_cols=287 Identities=10% Similarity=-0.021 Sum_probs=148.6
Q ss_pred CCChhHHHHHHHHHhhCCCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChH-HHHHHHHHHHhhcCCHH
Q 015590 68 LRDPISVISVLNQYSKRKDYNPNE-ALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDG-FFYNVIKIYGNMAGRIS 145 (404)
Q Consensus 68 ~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 145 (404)
.|+++.|.+.+....+. .|++ ..+-....+..+.|+.+.|.+.+....+.. |.+. .............|+++
T Consensus 97 ~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA---GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred CCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CcCchHHHHHHHHHHHHCCCHH
Confidence 46667777766665432 3332 223333455556677777777776654332 2221 12221122222266677
Q ss_pred HHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHH---HhcCChHHHHHHHH
Q 015590 146 KAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGL---CENGNLEAAFYVLD 222 (404)
Q Consensus 146 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~---~~~g~~~~a~~~~~ 222 (404)
.|.+.++++.+.. +-+...+..+...+.+.|++++|.+++..+.+.+..++......-..++ ...+..+++...+.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 7777777666654 2244456666666677777777777777776665332222211111222 22222222222333
Q ss_pred HchhCC---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHHhh
Q 015590 223 EFPKQN---CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVT---FNILISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 223 ~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
.+.+.. .+.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 322221 01355666666666777777777777777666652 23221 11111222334566666666666555
Q ss_pred CCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 297 KGCYPNS---ASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 297 ~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
. .|+. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 2222 33445666666667777777776643332345666666666667777777777776666543
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2.9e-12 Score=117.71 Aligned_cols=288 Identities=7% Similarity=-0.033 Sum_probs=212.9
Q ss_pred HhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHH--HHHHHHHHHHhcCcH
Q 015590 102 AQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVK--TFNLVLNLLVSAKLY 179 (404)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~ 179 (404)
...|+++.|++.+....+.. +.+...+-+........|+++.|.+.+.+..+.. |+.. .--.....+...|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 46799999999998876543 3344444444555555899999999999986643 4442 333457788899999
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHH-HHHHHH---HHcCCHHHHHHH
Q 015590 180 GEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYS-TLMHGL---CEKGNVEEAFGL 255 (404)
Q Consensus 180 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~~~~~~A~~~ 255 (404)
+.|.+.++.+.+.. |-+..+...+...|...|+++.|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.
T Consensus 170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999986 667788999999999999999999999999988743 333332 112222 333444444556
Q ss_pred HHHHHHCCCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhh---HHHHHHHHHhcCChhHHHHHHHHH
Q 015590 256 LERMESEGID---ADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSAS---YQEVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 256 ~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~ 329 (404)
+..+.+.... .+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++..
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 6666554221 27788889999999999999999999999987 344432 122222234457888999999888
Q ss_pred HHCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhh
Q 015590 330 ICERMSPSF--VSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETV 399 (404)
Q Consensus 330 ~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 399 (404)
.+. .+-|. ....++...+.+.|++++|.+.|+........|+...+..+-..+...|+.+.+..+++.-
T Consensus 326 lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 326 AKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 765 23344 5667889999999999999999996544467899999999989999999999998887753
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.63 E-value=3.7e-12 Score=126.65 Aligned_cols=296 Identities=12% Similarity=-0.002 Sum_probs=189.6
Q ss_pred HhcCCChhHHHHHHHHHhh-CCCCCCCHHHHHHHHHHHHhcCC---chHHHHH----------------------HHHHH
Q 015590 65 FSNLRDPISVISVLNQYSK-RKDYNPNEALYTLIINKLAQAKR---FDAIEDI----------------------MQRIK 118 (404)
Q Consensus 65 ~~~~~~~~~a~~~~~~~~~-~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~----------------------~~~~~ 118 (404)
..+.|+.++|..+|+.... ...-.++......++..|.+.+. ..++..+ .+...
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 3456778888888887765 22223344444466666666655 2222222 11211
Q ss_pred hcccCCCC--hHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCC
Q 015590 119 VEKLCRFS--DGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEI 196 (404)
Q Consensus 119 ~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 196 (404)
..-...|+ +...+..+..++. .+++++|...|.+..... |+......+...+...|++++|...|+.+... +|
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~-~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYR-DTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHH-hCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 11111122 3333333333333 377778888777766543 55444333444556788888888888877554 44
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015590 197 DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILIS 276 (404)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 276 (404)
+...+..+...+.+.|++++|...+++..+.+ +.+...+..+.....+.|++++|...|++..+. .|+...|..+..
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~ 617 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARAT 617 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 44556666777888888888888888877664 333333333444444558888888888888766 456777788888
Q ss_pred HHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHH
Q 015590 277 GLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVED 356 (404)
Q Consensus 277 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 356 (404)
.+.+.|+.++|+..|++..... +-+...++.+...+...|+.++|++.+++..+.. +-+...+..+..++...|++++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888888773 2245667777777888888888888888887652 3456677778888888888888
Q ss_pred HHHHHHHHHHCCCCCC
Q 015590 357 VDWVLKKMVQQGFVPR 372 (404)
Q Consensus 357 a~~~~~~m~~~~~~p~ 372 (404)
|+..+++..+ +.|+
T Consensus 696 A~~~l~~Al~--l~P~ 709 (987)
T PRK09782 696 TQHYARLVID--DIDN 709 (987)
T ss_pred HHHHHHHHHh--cCCC
Confidence 8888888874 4454
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.61 E-value=8.4e-12 Score=124.18 Aligned_cols=262 Identities=11% Similarity=-0.045 Sum_probs=201.6
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHH
Q 015590 90 NEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLV 169 (404)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 169 (404)
+...|..+..++.. ++.++|...+....... |++.....+...+. ..|++++|...|+++... +|+...+..+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~~~~L~lA~al~-~~Gr~eeAi~~~rka~~~--~p~~~a~~~l 548 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDAWQHRAVAYQAY-QVEDYATALAAWQKISLH--DMSNEDLLAA 548 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---CchHHHHHHHHHHH-HCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 67778888877776 89999999888776554 33332112222223 489999999999987654 3555567777
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCH
Q 015590 170 LNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNV 249 (404)
Q Consensus 170 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 249 (404)
...+.+.|++++|.+.++...+.. +.+...+..+.....+.|++++|...+++..+. .|+...|..+...+.+.|++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCH
Confidence 888899999999999999998875 334444444444555669999999999999877 46788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 015590 250 EEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 250 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 329 (404)
++|+..|++....... +...++.+...+...|+.++|+..+++..+... -+...+..+..++...|++++|+..+++.
T Consensus 626 deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 626 PAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887543 566788888899999999999999999988732 25678889999999999999999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 330 ICERMSPSF-VSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 330 ~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
.+. .|+. .+.........+..+++.+.+-++...
T Consensus 704 l~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 704 IDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred Hhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 875 4544 444445556666667777777766655
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.61 E-value=9.1e-12 Score=121.50 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=76.5
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHh
Q 015590 60 EVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGN 139 (404)
Q Consensus 60 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (404)
.++..+...|+.++|+..++++. ...+........+...+...|++++|.++++.+.+.. |++......+...+.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d---P~n~~~l~gLa~~y~ 147 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD---PTNPDLISGMIMTQA 147 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHh
Confidence 55555555566666666666554 1112222233333445555566666666666655443 222222222222222
Q ss_pred hcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 015590 140 MAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 140 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 219 (404)
..++.++|++.++++.... |+...+..++..+...++..+|++.++++.+.. |.+...+..++.+..+.|-...|.+
T Consensus 148 ~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 148 DAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred hcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 3566666666666655543 444444333333333344444666666666553 3445555555666666666666655
Q ss_pred HHHH
Q 015590 220 VLDE 223 (404)
Q Consensus 220 ~~~~ 223 (404)
+..+
T Consensus 225 l~~~ 228 (822)
T PRK14574 225 LAKE 228 (822)
T ss_pred HHHh
Confidence 5544
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=8.4e-13 Score=119.62 Aligned_cols=288 Identities=10% Similarity=-0.002 Sum_probs=219.6
Q ss_pred ChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHh-hcCCHHHHH
Q 015590 70 DPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGN-MAGRISKAI 148 (404)
Q Consensus 70 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 148 (404)
+.++|+..|...... +.-+..+...+..+|-..+++++|+++|+.+.........+..++..+.-..+ ...---.|.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 457899999985432 33445778888999999999999999999998776444445444443333322 111122334
Q ss_pred HHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCC
Q 015590 149 ETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQN 228 (404)
Q Consensus 149 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 228 (404)
++.+..+ -.+.+|.++.++|.-.++.+.|++.|++..+.. +-...+|+.+..-+....++|.|...|.......
T Consensus 412 ~Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 412 DLIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 4444433 356899999999999999999999999998764 3478899999888999999999999999888432
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 015590 229 CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQE 308 (404)
Q Consensus 229 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 308 (404)
+.+-.+|--+...|.+.++++.|+-.|++..+-+.. +.+....+...+-+.|+.|+|++++++....... |+..--.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 233334445677899999999999999999887655 6777788888899999999999999999877533 4545445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 015590 309 VLYGLLDKKRFPEAKELVGRMICERMSPSF-VSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPR 372 (404)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 372 (404)
.+..+...++.++|+..++++++. .|+. ..|..+...|.+.|+.+.|..-|.-+.+ +.|.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCc
Confidence 566677889999999999999884 5655 5667777999999999999999988884 4443
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=3.5e-11 Score=100.11 Aligned_cols=273 Identities=14% Similarity=0.075 Sum_probs=202.2
Q ss_pred hcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccH------HHHHHHHHHHHhc
Q 015590 103 QAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSV------KTFNLVLNLLVSA 176 (404)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~ 176 (404)
-.++.++|.+.|-+|.+.+ +......-.+..++++.|..|+|+++.+.+.+. ||. ...-.|..-|-..
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d---~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED---PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hhcCcchHHHHHHHHHhcC---chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHh
Confidence 4578899999999987654 444445556777777799999999999988774 443 2344566678888
Q ss_pred CcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcH----HHHHHHHHHHHHcCCHHHH
Q 015590 177 KLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNV----RTYSTLMHGLCEKGNVEEA 252 (404)
Q Consensus 177 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A 252 (404)
|-+|.|+.+|..+.+.| ..-......|+..|-...+|++|.++-+++.+.+-.+.. .-|..+...+....+.+.|
T Consensus 121 Gl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 121 GLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999998765 445567788999999999999999999988876533332 2466677777778899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 253 FGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 253 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
..++.+..+.+.+ .+..-..+.+.+...|+++.|.+.++...+.+...-+.+...|..+|.+.|+.++...++..+.+.
T Consensus 200 ~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 200 RELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999998876433 333344566778889999999999999999866656678889999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCC
Q 015590 333 RMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGK 387 (404)
Q Consensus 333 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 387 (404)
. +....-..+.+.-....-.+.|..++.+-+ .-+|+...+..++..-....
T Consensus 279 ~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql--~r~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 279 N--TGADAELMLADLIELQEGIDAAQAYLTRQL--RRKPTMRGFHRLMDYHLADA 329 (389)
T ss_pred c--CCccHHHHHHHHHHHhhChHHHHHHHHHHH--hhCCcHHHHHHHHHhhhccc
Confidence 3 333334444443333444556665555444 35699999999998554433
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=4.1e-11 Score=112.26 Aligned_cols=326 Identities=12% Similarity=0.032 Sum_probs=238.0
Q ss_pred HHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCC
Q 015590 64 IFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGR 143 (404)
Q Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 143 (404)
.+++ |+.++|..++.+.++.. +-....|..|...|-..|+.+++...+-.+.... |.+...|..+..+..+.|+
T Consensus 149 lfar-g~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~---p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN---PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHhccc
Confidence 4444 99999999999998764 6678899999999999999999998887765544 6677889888888888999
Q ss_pred HHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHH----HHHHHHHhcCChHHHHH
Q 015590 144 ISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLN----ILLKGLCENGNLEAAFY 219 (404)
Q Consensus 144 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~a~~ 219 (404)
++.|.-.|.+..+.. +++...+-.-...|-+.|+...|..-|.++.....+.|..-+. ..+..+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999998865 3444555556778899999999999999998875333333333 34566777788899999
Q ss_pred HHHHchhC-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--------------------------H
Q 015590 220 VLDEFPKQ-NCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTF--------------------------N 272 (404)
Q Consensus 220 ~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~--------------------------~ 272 (404)
.++..... +-..+...++.++..|.+...++.|......+......+|..-| .
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 88877652 22456677889999999999999999998888763222222111 1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015590 273 ILISGLRKQGKVEEGMKLLERMKGKG--CYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCN 350 (404)
Q Consensus 273 ~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 350 (404)
-+.-++.+....+....+.....+.. +.-+...|.-+..++.+.|++.+|+.++..+......-+...|..+.++|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 22233344444444444555555554 3345677888889999999999999999999876555567788889999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHhHHH-HHHhhccCCCCcchhhHHHh
Q 015590 351 QKLVEDVDWVLKKMVQQGFVPRMGMWRE-IVGCVTFGKDNRNRVYVTET 398 (404)
Q Consensus 351 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~~~~~~~~ 398 (404)
.|.+++|.+.|+..+ ...|+..--+. |-.-+...|+.+.+.+..+-
T Consensus 462 l~e~e~A~e~y~kvl--~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVL--ILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HhhHHHHHHHHHHHH--hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 999999999999988 45565443222 22344466777766665554
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=9.5e-11 Score=102.07 Aligned_cols=308 Identities=13% Similarity=0.057 Sum_probs=182.4
Q ss_pred HHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChH-HHHHHHHHHHhhcC
Q 015590 64 IFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDG-FFYNVIKIYGNMAG 142 (404)
Q Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 142 (404)
++......++++.-.+... ..|++-+...-+....+.-...+++.|+.+|+.+.+.+....++. .+.|.+-.--.+..
T Consensus 236 a~~el~q~~e~~~k~e~l~-~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLS-SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHH-hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 4444445566666666553 345555555555555555566777777777777766653333332 22233322211111
Q ss_pred CHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 015590 143 RISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLD 222 (404)
Q Consensus 143 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 222 (404)
-.-.|..+++-=+ -.+.|+..+.+-|+-.++.++|...|+...+.+ +.....|+.+..-|....+...|..-+.
T Consensus 315 Ls~LA~~v~~idK-----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVSNIDK-----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHhcc-----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1112222222111 123466666666666777777777777777665 4456667777777777777777777777
Q ss_pred HchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCC
Q 015590 223 EFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPN 302 (404)
Q Consensus 223 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 302 (404)
...+-+ |.|-..|-.+.++|.-.+.+.-|+-.|++..+-.+. |...|.+|...|.+.++.++|+..|......| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 777665 667777777777777777777777777777665322 66777777777777777777777777777665 224
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhH
Q 015590 303 SASYQEVLYGLLDKKRFPEAKELVGRMICE----RMSPS--FVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMW 376 (404)
Q Consensus 303 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 376 (404)
...+..|.+.|-+.++..+|...|...++. |...+ .....-|..-+.+.+++++|..+....... .+...--
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eea 543 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEA 543 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHH
Confidence 566777777777777777777777665542 32222 122223445566677777776665555422 4444444
Q ss_pred HHHHHhh
Q 015590 377 REIVGCV 383 (404)
Q Consensus 377 ~~ll~~~ 383 (404)
+.|++.+
T Consensus 544 k~LlRei 550 (559)
T KOG1155|consen 544 KALLREI 550 (559)
T ss_pred HHHHHHH
Confidence 4555444
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.5e-10 Score=99.13 Aligned_cols=284 Identities=14% Similarity=0.080 Sum_probs=160.9
Q ss_pred CChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHH
Q 015590 69 RDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAI 148 (404)
Q Consensus 69 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 148 (404)
|++..|.....+..+ .+ +.....|..-..+-...|+.+.+-+++.++.+.. ..++-............ .|+++.|.
T Consensus 98 G~~~qAEkl~~rnae-~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~-~~d~~aA~ 173 (400)
T COG3071 98 GDFQQAEKLLRRNAE-HG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLN-RRDYPAAR 173 (400)
T ss_pred CcHHHHHHHHHHhhh-cC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHh-CCCchhHH
Confidence 666666666666532 22 2223344455555566667777777766665432 01111112222222232 56666666
Q ss_pred HHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCH-------hHHHHHHHHHHhcCChHHHHHHH
Q 015590 149 ETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDA-------CCLNILLKGLCENGNLEAAFYVL 221 (404)
Q Consensus 149 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~ 221 (404)
.-.+++.+.+ +.++.......++|.+.|++..+..+...+.+.|.-.|. .+|..+++-....+..+.-...|
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 6666666544 234456666666777777777777777777766654432 35555565555555555555566
Q ss_pred HHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-CCC
Q 015590 222 DEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK-GCY 300 (404)
Q Consensus 222 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~ 300 (404)
+.....- +.+...-.+++.-+.+.|+.++|.++.++..+.+..|+ -...-.+.+-++.+.-.+..+.-.+. +.
T Consensus 253 ~~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~- 326 (400)
T COG3071 253 KNQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE- 326 (400)
T ss_pred HhccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-
Confidence 6554432 33445555666666677777777777666666655444 11222344555555555555544443 22
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 301 PNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 301 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
++..+.+|-..|.+.+.|.+|.+.|+...+ ..|+..+|+.+.+++.+.|+.++|.++.++...
T Consensus 327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 -DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 335566666667777777777777776554 356777777777777777777777776666553
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=5.9e-10 Score=95.63 Aligned_cols=284 Identities=12% Similarity=0.072 Sum_probs=228.0
Q ss_pred hcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHH
Q 015590 103 QAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEI 182 (404)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 182 (404)
..|+|.+|++...+-.+.+ +.+...+..-...+.+.|+.+.+-..+.+.-+.--.++....-+..+.....|++..|
T Consensus 96 ~eG~~~qAEkl~~rnae~~---e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG---EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC---cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 4699999999999876554 3334444444455556999999999999998853246667778888889999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcH-------HHHHHHHHHHHHcCCHHHHHHH
Q 015590 183 QGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNV-------RTYSTLMHGLCEKGNVEEAFGL 255 (404)
Q Consensus 183 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~ 255 (404)
..-.+++.+.+ +-+.........+|.+.|++.....+...+.+.|+-.|. .+|+.+++-....+..+.-...
T Consensus 173 ~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 173 RENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 99999999887 677889999999999999999999999999999865554 4688888877777777776667
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 015590 256 LERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMS 335 (404)
Q Consensus 256 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 335 (404)
+++...+ .+-++..-.+++.-+..+|+.++|.++..+..+++..|+ -+..-.+.+-++...-++..++..+. .+
T Consensus 252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~ 325 (400)
T COG3071 252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HP 325 (400)
T ss_pred HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CC
Confidence 7666433 233566777888889999999999999999999866655 22233466778888888888777654 34
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHh
Q 015590 336 PSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTET 398 (404)
Q Consensus 336 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 398 (404)
.++..+.++...|.+++.|.+|...|+... ...|+..+|+.+-.++..-|+...+..+.+.
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 455788999999999999999999999776 7889999999999999999999998887765
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=8.1e-11 Score=99.69 Aligned_cols=199 Identities=14% Similarity=-0.004 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHH
Q 015590 163 VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG 242 (404)
Q Consensus 163 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 242 (404)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.+ +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3455666666677777777777777666553 3445566666677777777777777777666554 4455566666677
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 015590 243 LCEKGNVEEAFGLLERMESEGIDA-DTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPE 321 (404)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 321 (404)
+...|++++|...|++.......+ ....+..+...+...|++++|...+.+..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 777777777777777766542211 23445556666777777777777777776653 1234566667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 322 AKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 322 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
|.+.+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777777665 23455566666677777777777777766665
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=5.3e-10 Score=105.01 Aligned_cols=349 Identities=13% Similarity=0.135 Sum_probs=246.0
Q ss_pred CCCCCCccchhh---cccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 015590 38 ASHQDSDHHAYK---LNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIM 114 (404)
Q Consensus 38 ~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 114 (404)
|....+..++.+ ..+.+...|.+|-.+|-+.|+.++++..+-.+-.. .+.|..-|..+.....+.|++++|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 444444444443 35667889999999999999999999988776432 3667789999999999999999999999
Q ss_pred HHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHH----HHHHHHHHhcCcHhHHHHHHHHHH
Q 015590 115 QRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTF----NLVLNLLVSAKLYGEIQGIYTSAA 190 (404)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~ 190 (404)
.++.+.. |+.-...+.-...+-+ .|+...|.+.|.++.....+.|..-+ -.++..+...++-+.|.+.++...
T Consensus 231 ~rAI~~~--p~n~~~~~ers~L~~~-~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 231 SRAIQAN--PSNWELIYERSSLYQK-TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHhcC--CcchHHHHHHHHHHHH-hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9998765 2333445555555544 99999999999999886522222222 334556677777789999888877
Q ss_pred HcC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHH----------------------H----HHHHHH
Q 015590 191 KLG-VEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTY----------------------S----TLMHGL 243 (404)
Q Consensus 191 ~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------------------~----~li~~~ 243 (404)
..+ -..+...++.++..|.+...++.|......+......+|..-| + -++-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 632 2455667889999999999999998888777652222222111 1 122333
Q ss_pred HHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 015590 244 CEKGNVEEAFGLLERMESEG--IDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPE 321 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 321 (404)
...+..+....+...+.+.. +.-+...|.-+..+|...|++.+|..+|..+......-+...|--+..+|...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 44444444444555555554 3334567888999999999999999999999988444467799999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHH--------HCCCCCCHHhHHHHHHhhccCCCCcch
Q 015590 322 AKELVGRMICERMSPS-FVSYKKLIHGLCNQKLVEDVDWVLKKMV--------QQGFVPRMGMWREIVGCVTFGKDNRNR 392 (404)
Q Consensus 322 a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~~~~~~~ 392 (404)
|.+.++..... .|+ ...--+|-..+-+.|+.++|.+.+..+. ..+..|+....-.....+...|+.+..
T Consensus 468 A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 468 AIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999875 443 3455566778889999999999999854 223444444443344445555555544
Q ss_pred h
Q 015590 393 V 393 (404)
Q Consensus 393 ~ 393 (404)
.
T Consensus 546 i 546 (895)
T KOG2076|consen 546 I 546 (895)
T ss_pred H
Confidence 3
No 42
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=2.2e-13 Score=84.37 Aligned_cols=50 Identities=50% Similarity=0.893 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015590 231 PNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRK 280 (404)
Q Consensus 231 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 280 (404)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.4e-10 Score=97.50 Aligned_cols=165 Identities=13% Similarity=0.005 Sum_probs=146.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015590 198 ACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISG 277 (404)
Q Consensus 198 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 277 (404)
+.|+.++.+-|+-.++.++|...|+...+.+ +.....|+.|..-|....+...|.+-++...+-... |-..|-.|.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHH
Confidence 3456667788888899999999999999887 677889999999999999999999999999887544 88899999999
Q ss_pred HHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHH
Q 015590 278 LRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDV 357 (404)
Q Consensus 278 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 357 (404)
|.-.+.+.-|+-.|++..... +-|...|.+|..+|.+.++.++|++.|......| ..+...+..+.+.|-+.++.++|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999998873 3377899999999999999999999999998875 45668899999999999999999
Q ss_pred HHHHHHHHH
Q 015590 358 DWVLKKMVQ 366 (404)
Q Consensus 358 ~~~~~~m~~ 366 (404)
...|.+.++
T Consensus 486 a~~yek~v~ 494 (559)
T KOG1155|consen 486 AQYYEKYVE 494 (559)
T ss_pred HHHHHHHHH
Confidence 999988776
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=1.1e-10 Score=111.42 Aligned_cols=250 Identities=12% Similarity=0.046 Sum_probs=174.1
Q ss_pred CCchHHHHHHHHHHhcccCCCChHHHHHHHHHH-H--------hhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHh
Q 015590 105 KRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIY-G--------NMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVS 175 (404)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--------~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 175 (404)
+++++|.+.|++..+.. |.....+..+... . ...+++++|...+++..+.+ +-+...+..+...+..
T Consensus 275 ~~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 45788999999887665 4444433333221 1 12355899999999988865 2356678888888889
Q ss_pred cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 015590 176 AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGL 255 (404)
Q Consensus 176 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 255 (404)
.|++++|...|++..+.. |.+...+..+...+...|++++|...+++..+.+ +.+...+..++..+...|++++|...
T Consensus 351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHH
Confidence 999999999999999886 5567788888999999999999999999988875 33333444455567778999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHC-C
Q 015590 256 LERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNS-ASYQEVLYGLLDKKRFPEAKELVGRMICE-R 333 (404)
Q Consensus 256 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~ 333 (404)
+++......+-+...+..+...+...|+.++|...+.++... .|+. ...+.+...|...| +.|...++.+.+. +
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 999876532224555677788888999999999999887665 3343 34455555667666 4788877776653 1
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 015590 334 MSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ 367 (404)
Q Consensus 334 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (404)
..+....+ +-..+.-.|+-+.+... +++.+.
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 22322222 33445556666666555 777654
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=2.6e-10 Score=108.81 Aligned_cols=244 Identities=9% Similarity=0.031 Sum_probs=179.0
Q ss_pred cCCHHHHHHHHhhcccCCCCcc-HHHHHHHHHHHH---------hcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 015590 141 AGRISKAIETLFDMPSYNCWPS-VKTFNLVLNLLV---------SAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCE 210 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 210 (404)
.+..++|.+.|++..+.. |+ ...|..+..++. ..+++++|...+++..+.. +.+...+..+...+..
T Consensus 274 ~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 356789999999998865 65 445665555443 2345889999999999886 6678888889999999
Q ss_pred cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 015590 211 NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKL 290 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 290 (404)
.|++++|...|++..+.+ +.+...|..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...
T Consensus 351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHH
Confidence 999999999999998886 566778899999999999999999999999887543 222333445556678999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHC-C
Q 015590 291 LERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPS-FVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ-G 368 (404)
Q Consensus 291 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~ 368 (404)
+++......+-+...+..+..++...|+.++|.+.+.++... .|+ ....+.+...|...| ++|...++.+.+. .
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 999876532224455777788888999999999999998654 444 344555666777777 5888888887764 4
Q ss_pred CCCCHHhHHHHHHhhccCCCCcchhhH
Q 015590 369 FVPRMGMWREIVGCVTFGKDNRNRVYV 395 (404)
Q Consensus 369 ~~p~~~~~~~ll~~~~~~~~~~~~~~~ 395 (404)
-.|....+..++.+ ..|+.+.+..+
T Consensus 505 ~~~~~~~~~~~~~~--~~g~~~~~~~~ 529 (553)
T PRK12370 505 RIDNNPGLLPLVLV--AHGEAIAEKMW 529 (553)
T ss_pred HhhcCchHHHHHHH--HHhhhHHHHHH
Confidence 44444444444443 33444444333
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.1e-10 Score=98.81 Aligned_cols=203 Identities=18% Similarity=0.078 Sum_probs=167.5
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015590 196 IDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILI 275 (404)
Q Consensus 196 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 275 (404)
.....+..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.... +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 345678888999999999999999999988765 556788899999999999999999999999877543 566788888
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 015590 276 SGLRKQGKVEEGMKLLERMKGKGC-YPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLV 354 (404)
Q Consensus 276 ~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 354 (404)
..+...|++++|...+++..+... ......+..+...+...|++++|.+.+.+..... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999987532 2234567778888999999999999999998753 34567888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhhhhh
Q 015590 355 EDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETVDSL 402 (404)
Q Consensus 355 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
++|...+++..+. ...+...+..+...+...|+.+.+..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999876 3345566667777777888988888887776653
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.42 E-value=2.7e-09 Score=96.98 Aligned_cols=328 Identities=11% Similarity=0.044 Sum_probs=166.3
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHH
Q 015590 56 LSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIK 135 (404)
Q Consensus 56 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (404)
.+|+.--..|.+.+..+.|..+|...++. ++.+...|......=-..|..++...+++++...- |....+|.+..
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~---pkae~lwlM~a 591 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC---PKAEILWLMYA 591 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CcchhHHHHHH
Confidence 45666666666666666666666666543 24444555555544444555555555555544332 22333333322
Q ss_pred HHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH
Q 015590 136 IYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLE 215 (404)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 215 (404)
.-.-..|++..|..++....+.. +.+...|-.-+.......+++.|..+|.+.... .|+..+|.--++.---.++.+
T Consensus 592 ke~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHH
Confidence 22222455555555555544433 113334555555555555555555555544432 233333433333333344445
Q ss_pred HHHHHHHHchhCC---------------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 216 AAFYVLDEFPKQN---------------------------------CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 216 ~a~~~~~~~~~~~---------------------------------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
+|.+++++..+.- ++-....|-.+...=-+.|.+-+|..++++...+
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 5554444443331 1223334444444444444555555555554444
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 015590 263 GIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYK 342 (404)
Q Consensus 263 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 342 (404)
+.+ +...|-..|++-.+.|+.+.|..+..+..+. ++-+...|..-|....+.++-......+.+ ..-|+...-
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVll 821 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLL 821 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHH
Confidence 333 4445555555555555555555555444443 111233344444433333332222222221 234556666
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HhHHHHHHhhccCCCCcchhhHHHhhh
Q 015590 343 KLIHGLCNQKLVEDVDWVLKKMVQQGFVPRM-GMWREIVGCVTFGKDNRNRVYVTETVD 400 (404)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~ 400 (404)
++...+.....+++|++.|.+.+ .+.||. .+|.-+...+..+|..+....|+++-.
T Consensus 822 aia~lfw~e~k~~kar~Wf~Rav--k~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAV--KKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--ccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 67777778888899999998888 445554 477777777788888777777776543
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=5.6e-11 Score=107.99 Aligned_cols=272 Identities=10% Similarity=-0.028 Sum_probs=200.6
Q ss_pred CchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCC--CCccHHHHHHHHHHHHhcCcHhHHH
Q 015590 106 RFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYN--CWPSVKTFNLVLNLLVSAKLYGEIQ 183 (404)
Q Consensus 106 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~ 183 (404)
+..+|...|..+...- .-+..+...+-.+|.. -+++++|.++|+.+.+.. ..-+...|.+.+--+ .+.-+--
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFE-l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFE-LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDEVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---HhhHHHH
Confidence 4677888888865443 1222444456667776 899999999999887743 111345666665433 2222222
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 015590 184 GIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEG 263 (404)
Q Consensus 184 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 263 (404)
-+-+++.+.. +..+.+|.++.++|.-.++.+.|.+.|++..+.+ +....+|+.+..-+.....+|+|...|+.....
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 2334444443 5678899999999999999999999999999875 447889999988899999999999999988765
Q ss_pred CCCCHHHH---HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 015590 264 IDADTVTF---NILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVS 340 (404)
Q Consensus 264 ~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 340 (404)
|+..| --+.-.|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.++|+++++++...+ +.|+..
T Consensus 485 ---~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~ 559 (638)
T KOG1126|consen 485 ---DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLC 559 (638)
T ss_pred ---CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchh
Confidence 55555 45677899999999999999999987533 66777778888999999999999999998764 234444
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHH-HhhccCCCCcchh
Q 015590 341 YKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIV-GCVTFGKDNRNRV 393 (404)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~~~ 393 (404)
---....+...+++++|...+++++ .+.|+..+...++ +.|.+-|..+.+.
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk--~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELK--ELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHH--HhCcchHHHHHHHHHHHHHHccchHHH
Confidence 4445677888999999999999999 5778876555444 4666666554443
No 49
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=7.5e-13 Score=81.98 Aligned_cols=49 Identities=47% Similarity=0.748 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 015590 266 ADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLL 314 (404)
Q Consensus 266 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 314 (404)
||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=6.8e-11 Score=110.49 Aligned_cols=248 Identities=14% Similarity=0.147 Sum_probs=152.8
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCcc
Q 015590 83 KRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPS 162 (404)
Q Consensus 83 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 162 (404)
+..|+.|+..||..+|..||..|+.+.|- +|.-|.... .+.....+..++.+... +++.+.+. .|.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~-And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKE-ANDAENPK-----------EPL 82 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccc-cccccCCC-----------CCc
Confidence 56789999999999999999999999998 888886554 33444555555555454 77776654 478
Q ss_pred HHHHHHHHHHHHhcCcHhH---HHHHHHHHH----HcCCCCCHhH--------------HHHHHHHHHhcCChHHHHHHH
Q 015590 163 VKTFNLVLNLLVSAKLYGE---IQGIYTSAA----KLGVEIDACC--------------LNILLKGLCENGNLEAAFYVL 221 (404)
Q Consensus 163 ~~~~~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~~~~~~~--------------~~~li~~~~~~g~~~~a~~~~ 221 (404)
..||..+..+|...||... +++.+.... ..|+...... -...+....-.|-++.+.+++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998764 222111111 1221111110 112223333344555555555
Q ss_pred HHchhCCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC
Q 015590 222 DEFPKQNCEPNVRTYSTLMHGLCEKG-NVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCY 300 (404)
Q Consensus 222 ~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 300 (404)
..+....-. . .+..+++-+.... .+++-....+...+ .|++.+|.+++..-...|+.+.|..++.+|.+.|++
T Consensus 163 ~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 163 AKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred hhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 544432100 0 1111233322222 23333333333322 467777777777777778888888888888887777
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 015590 301 PNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKL 353 (404)
Q Consensus 301 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 353 (404)
.+.+-|..|+-+ .++...+..++.-|.+.|+.|+..|+...+..+..+|.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777777777655 66777777777777777788887777777766666554
No 51
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=2.3e-09 Score=99.28 Aligned_cols=291 Identities=11% Similarity=0.075 Sum_probs=208.0
Q ss_pred HHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHH-h--
Q 015590 63 KIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYG-N-- 139 (404)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-- 139 (404)
..+...|++++|++.++.-.. .+......+......+.+.|+.++|..++..+...+ |++..++..+.... .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhc
Confidence 466788999999999987632 244445667788889999999999999999998876 67777777665554 1
Q ss_pred --hcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 015590 140 --MAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLY-GEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEA 216 (404)
Q Consensus 140 --~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 216 (404)
...+.+...++++++...- |.......+.-.+.....+ ..+..++..+...|+|+ +|+.+-..|....+.+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 1235788888998886643 4444333332222222233 34566677777888654 56667677776655555
Q ss_pred HHHHHHHchhC----C----------CCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 015590 217 AFYVLDEFPKQ----N----------CEPNVRTY--STLMHGLCEKGNVEEAFGLLERMESEGIDAD-TVTFNILISGLR 279 (404)
Q Consensus 217 a~~~~~~~~~~----~----------~~~~~~~~--~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~ 279 (404)
...++...... + -+|+...| .-+...|-..|++++|+..+++..+. .|+ +..|..-.+.+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 55555554321 1 13444444 55677888999999999999999887 344 567778889999
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHcC
Q 015590 280 KQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFV------SY--KKLIHGLCNQ 351 (404)
Q Consensus 280 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~--~~li~~~~~~ 351 (404)
+.|++.+|.+.++........ |...-+-.+..+.++|+.++|.+++..+.+.+..|... .| .....+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987533 66777778888999999999999999998766443221 12 3345688999
Q ss_pred CChHHHHHHHHHHHH
Q 015590 352 KLVEDVDWVLKKMVQ 366 (404)
Q Consensus 352 g~~~~a~~~~~~m~~ 366 (404)
|++..|++-|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999888877665
No 52
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=2.6e-09 Score=93.14 Aligned_cols=208 Identities=12% Similarity=0.025 Sum_probs=150.2
Q ss_pred cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 015590 176 AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGL 255 (404)
Q Consensus 176 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 255 (404)
.|++++|.+.|++.....-......|| +.-.+-+.|++++|+..|-.+...= ..+..+.-.+.+.|-...+..+|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 566777777777776553222222333 2334566788888888776654321 23556666677778888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 015590 256 LERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMS 335 (404)
Q Consensus 256 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 335 (404)
+-+.... ++-|+...+-|...|-+.|+-..|.+.+-+--+- ++-+..+..-|...|....-+++++.+|++..- +.
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 7655433 3346777888888899999999988887655443 344677878888888888889999999998764 68
Q ss_pred CCHHHHHHHHHHH-HcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCc
Q 015590 336 PSFVSYKKLIHGL-CNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNR 390 (404)
Q Consensus 336 p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 390 (404)
|+..-|..++..| .+.|++++|.++++...++ +.-|..+...|++.+..-|..+
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 9999999888655 5689999999999998764 7778889999998876655543
No 53
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.37 E-value=1.3e-09 Score=103.20 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 015590 282 GKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVL 361 (404)
Q Consensus 282 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 361 (404)
+..++|+++|.+..+.. +-|...-|-+.-.++..|++.+|..+|....+.. .-+..+|-.+..+|...|++..|+++|
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 34577888888887764 2355666677777888889999999998888764 234456777888888999999999999
Q ss_pred HHHHHC-CCCCCHHhHHHHHHhhccCCCCcchhhH
Q 015590 362 KKMVQQ-GFVPRMGMWREIVGCVTFGKDNRNRVYV 395 (404)
Q Consensus 362 ~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 395 (404)
+...+. .-.-++.+.+.|-+++...+.++.+...
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 877765 5556677788888888888876666543
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=3.5e-10 Score=94.38 Aligned_cols=234 Identities=13% Similarity=0.032 Sum_probs=193.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 015590 132 NVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCEN 211 (404)
Q Consensus 132 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 211 (404)
+-+..++.+-|.+.+|.+.|+.-...- |-+.||-.|-+.|.+..++..|+.++.+-.+. +|-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 344444444999999999999877753 77789999999999999999999999988765 355665566778888889
Q ss_pred CChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 015590 212 GNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLL 291 (404)
Q Consensus 212 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 291 (404)
++.++|.++++...+.. +.++.+..++...|.-.++++-|+..|+++.+-|+. +...|+.+.-+|...+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988775 667778888888899999999999999999999988 8889999998999999999999999
Q ss_pred HHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 015590 292 ERMKGKGCYPN--SASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGF 369 (404)
Q Consensus 292 ~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 369 (404)
.+....-..|+ ..+|-.+-......|++..|.+.|+-...++ .-+...++.+.-.-.+.|++++|+.+++... .+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~--s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK--SV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh--hh
Confidence 98877643343 3678888888888899999999999988763 3455788888888889999999999999887 45
Q ss_pred CCCH
Q 015590 370 VPRM 373 (404)
Q Consensus 370 ~p~~ 373 (404)
.|+.
T Consensus 459 ~P~m 462 (478)
T KOG1129|consen 459 MPDM 462 (478)
T ss_pred Cccc
Confidence 5654
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=2.1e-09 Score=93.73 Aligned_cols=184 Identities=10% Similarity=0.042 Sum_probs=140.2
Q ss_pred hcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 015590 210 ENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMK 289 (404)
Q Consensus 210 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 289 (404)
..|++++|.+.+.+.....-.-....||. --.+-..|+.++|++.|-++..-- .-+......+.+.|....+...|.+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 35788899998888875432222233332 234567889999999998775321 1266677778888988999999999
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 015590 290 LLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGF 369 (404)
Q Consensus 290 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 369 (404)
++-..... ++-|+....-|...|-+.|+-..|.+.+-+--.- ++-+..+...|..-|....-++++..+|++.. -+
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--li 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LI 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hc
Confidence 98776654 3447788899999999999999999887654432 56788898888889999999999999999876 68
Q ss_pred CCCHHhHHHHHHhh-ccCCCCcchhhHHHhh
Q 015590 370 VPRMGMWREIVGCV-TFGKDNRNRVYVTETV 399 (404)
Q Consensus 370 ~p~~~~~~~ll~~~-~~~~~~~~~~~~~~~~ 399 (404)
+|+..-|..++..| .+.|+...+..+++.+
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999855 5778887777776655
No 56
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.32 E-value=4.2e-09 Score=99.85 Aligned_cols=201 Identities=9% Similarity=0.045 Sum_probs=142.8
Q ss_pred CcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCC-CCCcHHHHHHHHHHHHH----------
Q 015590 177 KLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQN-CEPNVRTYSTLMHGLCE---------- 245 (404)
Q Consensus 177 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~---------- 245 (404)
+...+|...+.+..... ..++..+..+.+.+.+..++..|.+-|....+.- ..+|..+.-+|.+.|.+
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 34444444444444332 3344555556667777777777777555554331 12455555555565543
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 015590 246 --KGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAK 323 (404)
Q Consensus 246 --~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 323 (404)
.+..++|+++|.+......+ |...-|-+.-.++..|++.+|..+|....+... -...+|-.+..+|...|++..|+
T Consensus 623 k~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHH
Confidence 23567899999998887655 777778888889999999999999999998843 25578999999999999999999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 015590 324 ELVGRMICE-RMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIV 380 (404)
Q Consensus 324 ~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 380 (404)
++|+...+. .-..+......|.+++...|.+.+|.+.+-........-....+|..+
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 999987655 445677889999999999999999999998887543333334455444
No 57
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=4.8e-08 Score=85.86 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=101.5
Q ss_pred CCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHH
Q 015590 68 LRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKA 147 (404)
Q Consensus 68 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 147 (404)
.++.+.|.++|+.++... ..+...|..-+.+=.++..+..|..++++....- |.-+..++..+.. -..-|++..|
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ym-EE~LgNi~ga 160 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYM-EEMLGNIAGA 160 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHH-HHHhcccHHH
Confidence 456778889999887543 4456667777777778888888999998876542 2223333333333 3347889999
Q ss_pred HHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHc
Q 015590 148 IETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEF 224 (404)
Q Consensus 148 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 224 (404)
.++|++-.+ ..|+...|.+.|+.-.+-+.++.|..+|+...-. .|++.+|--....--++|+...|..+|+..
T Consensus 161 RqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 161 RQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999988766 4588889999888888888888888888887643 466666655555555555555554444443
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1e-08 Score=90.31 Aligned_cols=221 Identities=15% Similarity=0.082 Sum_probs=137.9
Q ss_pred hcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 015590 175 SAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFG 254 (404)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 254 (404)
-.|+.-.+..-|+..++... .+...|.-+..+|....+.++..+.|+...+.+ +-|..+|..-...+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 35677778888887777642 223336666777777788888888888777665 5566667666666667777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 015590 255 LLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERM 334 (404)
Q Consensus 255 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 334 (404)
=|++....... +...|..+.-+.-+.++++++...|++..++ ++-.+.+|+.....+...++++.|.+.|+..++...
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 77777665333 4556666666666777777777777777766 233456777777777777777777777777665311
Q ss_pred C-----CCHH--HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHhhccCCCCcchhhHHHhhhhh
Q 015590 335 S-----PSFV--SYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMG-MWREIVGCVTFGKDNRNRVYVTETVDSL 402 (404)
Q Consensus 335 ~-----p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
. .++. .--+++..- -.+++..|.+++.+..+ +.|... .|..|-..-.+.++.+++..++|.--.+
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1 1111 111222111 23667777777777663 334332 4555555556667777766666654333
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.6e-08 Score=90.57 Aligned_cols=277 Identities=12% Similarity=0.018 Sum_probs=196.7
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHh
Q 015590 60 EVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGN 139 (404)
Q Consensus 60 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (404)
.--.-+...+++.+.+.+++...+..+ +....+..-|..+...|+..+...+=..+...- |+....|-.+..|+-
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y---P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKDP--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY---PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC---CCCCcchhhHHHHHH
Confidence 334456667888899999998887664 444555556667888888777666666665543 566666777777776
Q ss_pred hcCCHHHHHHHHhhcccCCCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 015590 140 MAGRISKAIETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAF 218 (404)
Q Consensus 140 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 218 (404)
.-|+.++|.+.|.+....+ |+ ...|-.....|+-.|..++|+..|...-+.= +-...-+--+.--|.+.++++.|.
T Consensus 324 ~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHH
Confidence 6899999999998876533 33 3578888888888999999988887776541 111111222444577788899999
Q ss_pred HHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015590 219 YVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE--GID----ADTVTFNILISGLRKQGKVEEGMKLLE 292 (404)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~ 292 (404)
+.|.+..... |.|+...+-+.-.....+.+.+|..+|+..... .+. .-..+++.|..+|.+.+..++|+..|+
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9998877665 667777887777777788888998888876521 111 134457778888888888888888888
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015590 293 RMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGL 348 (404)
Q Consensus 293 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 348 (404)
...... +-+..++.++.-.|...|+++.|.+.|.+... +.|+..+...++..+
T Consensus 480 ~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 480 KALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 877763 33677788888888888888888888888775 577776666666533
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=1.6e-08 Score=88.68 Aligned_cols=228 Identities=14% Similarity=0.007 Sum_probs=146.8
Q ss_pred cCCHHHHHHHHhhcccCC-CCcc--HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 015590 141 AGRISKAIETLFDMPSYN-CWPS--VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAA 217 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a 217 (404)
.+..+.++.-+.++.... ..|+ ...|..+...+...|++++|...|++..+.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345566666666665421 1222 3457777778888888888888888888765 55678888888888888888888
Q ss_pred HHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 218 FYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
...|+...+.. +.+..+|..+...+...|++++|++.|+...+.. |+..........+...++.++|.+.|.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 88888887764 4456777778888888888888888888887763 33322222222334567888888888665533
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 015590 298 GCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE---R--MSP-SFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVP 371 (404)
Q Consensus 298 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 371 (404)
. .|+. |.. .......|+..++ +.+..+.+. . ..| ....|..+...+...|++++|...|++..+.+ .|
T Consensus 195 ~-~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~ 268 (296)
T PRK11189 195 L-DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY 268 (296)
T ss_pred C-Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc
Confidence 2 2222 221 1223335555554 344444422 0 111 23567788888888999999999998888543 23
Q ss_pred CHHhHHH
Q 015590 372 RMGMWRE 378 (404)
Q Consensus 372 ~~~~~~~ 378 (404)
|..-+..
T Consensus 269 ~~~e~~~ 275 (296)
T PRK11189 269 NFVEHRY 275 (296)
T ss_pred hHHHHHH
Confidence 4444443
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=6.7e-09 Score=86.93 Aligned_cols=230 Identities=10% Similarity=-0.029 Sum_probs=189.0
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHH-HHHHHHHH
Q 015590 166 FNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTY-STLMHGLC 244 (404)
Q Consensus 166 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~ 244 (404)
-+.+.++|.+.|.+.+|+.-++.-.+. .|-+.||-.|-..|.+..+++.|+.+|.+-.+. .|-.+|| .-+...+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 367889999999999999999988877 567778889999999999999999999998876 4555554 55777888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 015590 245 EKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKE 324 (404)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 324 (404)
..++.++|.++|+...+.... ++....++...|...++++.|+..|+++..-|+. ++..|+.+.-+|.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 899999999999999876433 5666677778888899999999999999999976 88999999999999999999999
Q ss_pred HHHHHHHCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhhhhh
Q 015590 325 LVGRMICERMSPSF--VSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETVDSL 402 (404)
Q Consensus 325 ~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
-|++....-..|+. ..|-.+-......|++.-|.+.|+-....+-. +...++-|----.+.|+.+.+..+.+.-++.
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99998876444544 46777888888999999999999988754322 3346666655557889999998888766554
No 62
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.19 E-value=2.1e-07 Score=85.12 Aligned_cols=312 Identities=12% Similarity=-0.008 Sum_probs=243.8
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCC--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHH
Q 015590 56 LSPTEVLKIFSNLRDPISVISVLNQYSKRKDYN--PNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNV 133 (404)
Q Consensus 56 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 133 (404)
..|-.=-..|-+.|.+-.+..+....+. -|+. .-..||..-...|.+.+.++-|+.+|....+-. |....+|.-
T Consensus 480 dqWl~eAe~~e~agsv~TcQAIi~avig-igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf---p~k~slWlr 555 (913)
T KOG0495|consen 480 DQWLKEAEACEDAGSVITCQAIIRAVIG-IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF---PCKKSLWLR 555 (913)
T ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHh-hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc---cchhHHHHH
Confidence 3455555566666777777777666643 2222 235689999999999999999999999987643 677888888
Q ss_pred HHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 015590 134 IKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGN 213 (404)
Q Consensus 134 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 213 (404)
...+-+..|..+.-..+|++....- +-....|-.....+...|+...|..++....+.. +.+..+|-+-+..-....+
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e 633 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDE 633 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhcccc
Confidence 8888888999999999999998753 3455677777788888999999999999999876 5578899999999999999
Q ss_pred hHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHH
Q 015590 214 LEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADT-VTFNILISGLRKQGKVEEGMKLLE 292 (404)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~ 292 (404)
++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+. -|+- ..|..+.+.+-+.++++.|...|.
T Consensus 634 ~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 634 LERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred HHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999998876 578888887777777889999999999998876 4453 467777888889999999999887
Q ss_pred HHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 015590 293 RMKGKGCYPN-SASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVP 371 (404)
Q Consensus 293 ~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 371 (404)
.-.+. -|+ ...|-.|...--+.|.+-.|..++++.+..+ +-+...|-..|+.=.+.|+.+.|..+..+.++. +..
T Consensus 710 ~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~ 785 (913)
T KOG0495|consen 710 QGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPS 785 (913)
T ss_pred hcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCc
Confidence 66554 343 4567677777777889999999999988764 557788999999999999999999888777653 333
Q ss_pred CHHhHHHHHH
Q 015590 372 RMGMWREIVG 381 (404)
Q Consensus 372 ~~~~~~~ll~ 381 (404)
+...|..-|.
T Consensus 786 sg~LWaEaI~ 795 (913)
T KOG0495|consen 786 SGLLWAEAIW 795 (913)
T ss_pred cchhHHHHHH
Confidence 3334444333
No 63
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.19 E-value=3.2e-07 Score=83.21 Aligned_cols=305 Identities=10% Similarity=0.001 Sum_probs=186.4
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHH--
Q 015590 57 SPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEA-LYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNV-- 133 (404)
Q Consensus 57 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-- 133 (404)
.|..+...+...|+++.+...+....+.....++.. ........+...|++++|.+.++...... |.+...+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY---PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHhH
Confidence 444455566666788887777777655443333332 22233445678899999999999887653 344333321
Q ss_pred -HHHHHhhcCCHHHHHHHHhhcccCCCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 015590 134 -IKIYGNMAGRISKAIETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCEN 211 (404)
Q Consensus 134 -l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 211 (404)
........+..+.+.+.+..... ..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...|...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 11111224666667776665222 2243 3345566678889999999999999999875 55677888899999999
Q ss_pred CChHHHHHHHHHchhCCC-CCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHcCCCH
Q 015590 212 GNLEAAFYVLDEFPKQNC-EPNV--RTYSTLMHGLCEKGNVEEAFGLLERMESEGI-DADTVTF-N--ILISGLRKQGKV 284 (404)
Q Consensus 212 g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~ 284 (404)
|++++|...+++...... .++. ..|..+...+...|++++|..+|++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999998776431 1232 3455788889999999999999999864432 1122111 1 223333444433
Q ss_pred HHHHHH--HHHH-hhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHHHcCC
Q 015590 285 EEGMKL--LERM-KGKGC-YPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMS---P-----SFVSYKKLIHGLCNQK 352 (404)
Q Consensus 285 ~~a~~~--~~~m-~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---p-----~~~~~~~li~~~~~~g 352 (404)
+.+.++ .... ..... ............++...|+.++|..+++.+...... - .........-++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333332 2111 11100 111122235666778889999999999988764211 0 1111122223456889
Q ss_pred ChHHHHHHHHHHHHC
Q 015590 353 LVEDVDWVLKKMVQQ 367 (404)
Q Consensus 353 ~~~~a~~~~~~m~~~ 367 (404)
+.++|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887643
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=5.7e-08 Score=85.19 Aligned_cols=218 Identities=14% Similarity=0.023 Sum_probs=125.3
Q ss_pred CChhHHHHHHHHHhhCCCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHH
Q 015590 69 RDPISVISVLNQYSKRKDYNPN--EALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISK 146 (404)
Q Consensus 69 ~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 146 (404)
+..+.++.-+.+++......|+ ...|..+...+...|++++|...|+...+.. |++...++.+...+...|++++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHHH
Confidence 4667788888888765444443 3456677777778888888888887776554 4444444444444444788888
Q ss_pred HHHHHhhcccCCCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHch
Q 015590 147 AIETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFP 225 (404)
Q Consensus 147 A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 225 (404)
|...|++..+.. |+ ..+|..+...+...|++++|.+.++...+.. |+..........+...++.++|...|....
T Consensus 117 A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 117 AYEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 888887777643 43 4566667777777778888888777777653 322212222223344566777777775544
Q ss_pred hCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CC--C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 015590 226 KQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEG---ID--A-DTVTFNILISGLRKQGKVEEGMKLLERMKGKG 298 (404)
Q Consensus 226 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 298 (404)
... .++...| .......|+..++ ..+..+.+.. +. | ....|..+...+.+.|+.++|...|++..+.+
T Consensus 193 ~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 321 2222111 1222234444433 2334433211 00 0 22356666666666677777777776666553
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.9e-07 Score=80.82 Aligned_cols=297 Identities=11% Similarity=-0.020 Sum_probs=216.5
Q ss_pred HhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCH
Q 015590 65 FSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRI 144 (404)
Q Consensus 65 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 144 (404)
.+..++...|...+--+....-++.|......+.+.+...|+.++|+..|+.....+.........+. .+..+.|+.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya---~LL~~eg~~ 282 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYA---VLLGQEGGC 282 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHH---HHHHhccCH
Confidence 33446666666666665555567888999999999999999999999999998655421111222222 223347888
Q ss_pred HHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHc
Q 015590 145 SKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEF 224 (404)
Q Consensus 145 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 224 (404)
+....+...+.... +-+...|-.-.......++++.|+.+-+..++.. +.+...+-.-.+.+...|++++|.-.|...
T Consensus 283 e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 283 EQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 88888887776532 1334456555666677889999999998888764 445556666667788899999999999987
Q ss_pred hhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-cCCCHHHHHHHHHHHhhCCCCCC
Q 015590 225 PKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILI-SGLR-KQGKVEEGMKLLERMKGKGCYPN 302 (404)
Q Consensus 225 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~m~~~~~~p~ 302 (404)
.... |-+..+|.-++..|...|++.+|...-++.... ++.+..+.+.+. ..+. ...--++|.+++++-.+. .|+
T Consensus 361 q~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~ 436 (564)
T KOG1174|consen 361 QMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPI 436 (564)
T ss_pred Hhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCc
Confidence 7654 568899999999999999999998776654432 122445554442 2222 223357899999887766 454
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 015590 303 -SASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMG 374 (404)
Q Consensus 303 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 374 (404)
....+.+...+...|..+.++.+++..... .||....+.+.+.+...+.+++|...|.... .+.|+..
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL--r~dP~~~ 505 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL--RQDPKSK 505 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH--hcCccch
Confidence 345667777788899999999999998874 7999999999999999999999999999888 4556544
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.17 E-value=2.3e-07 Score=84.17 Aligned_cols=305 Identities=11% Similarity=-0.009 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHH
Q 015590 91 EALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVL 170 (404)
Q Consensus 91 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 170 (404)
...|..+...+...|+.+.+.+.+...........+......+-.......|++++|.+.+++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44566666667777888887777776554432222322222222223334899999999999987754 223334442 2
Q ss_pred HHHHh----cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc
Q 015590 171 NLLVS----AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK 246 (404)
Q Consensus 171 ~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 246 (404)
..+.. .+..+.+.+.+... ....+........+...+...|++++|...+++..+.. +.+...+..+...|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 22222 34445555555441 11122334455566778899999999999999998876 56677888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC-CCChhhH-H--HHHHHHHhcCCh
Q 015590 247 GNVEEAFGLLERMESEGID-ADT--VTFNILISGLRKQGKVEEGMKLLERMKGKGC-YPNSASY-Q--EVLYGLLDKKRF 319 (404)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~-p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~ 319 (404)
|++++|...+++....... |+. ..|..+...+...|+.++|..++++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 9999999999998765322 232 3456788889999999999999999865422 1122111 1 223333444544
Q ss_pred hHHHHH--H-HHHHHCCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC------CCHHhHHHHHHh--hccCC
Q 015590 320 PEAKEL--V-GRMICERM-SPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFV------PRMGMWREIVGC--VTFGK 387 (404)
Q Consensus 320 ~~a~~~--~-~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------p~~~~~~~ll~~--~~~~~ 387 (404)
+.+.+. + ........ ............++...|+.++|..+++.+...... ....+-..++.+ +...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333333 2 21111100 111122235667788999999999999998764222 111122233333 34666
Q ss_pred CCcchhhHHHhh
Q 015590 388 DNRNRVYVTETV 399 (404)
Q Consensus 388 ~~~~~~~~~~~~ 399 (404)
+.+.+..++...
T Consensus 322 ~~~~A~~~L~~a 333 (355)
T cd05804 322 NYATALELLGPV 333 (355)
T ss_pred CHHHHHHHHHHH
Confidence 766666655544
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.17 E-value=7e-09 Score=97.41 Aligned_cols=240 Identities=15% Similarity=0.157 Sum_probs=150.1
Q ss_pred cCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHH
Q 015590 52 HKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFY 131 (404)
Q Consensus 52 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 131 (404)
.||.+||.++|..|+..|+.+.|- +|.-|. -...+.+...|+.++......++.+.+. .|...++.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDtyt 87 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK------------EPLADTYT 87 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC------------CCchhHHH
Confidence 467788888888888888888777 777763 3344445555555555555555544432 12223333
Q ss_pred HHHHHHHhhcCCHH-----------------------HHHHHHhhccc-CCCCccHHHHHHHHHHHHhcCcHhHHHHHHH
Q 015590 132 NVIKIYGNMAGRIS-----------------------KAIETLFDMPS-YNCWPSVKTFNLVLNLLVSAKLYGEIQGIYT 187 (404)
Q Consensus 132 ~~l~~~~~~~g~~~-----------------------~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 187 (404)
+++..|.. .||.. ....++..+.- .+.-||. ...+....-.|-|+.++++..
T Consensus 88 ~Ll~ayr~-hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 88 NLLKAYRI-HGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred HHHHHHHh-ccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHHHHHHHh
Confidence 33333333 44433 22222222211 1112222 223344455566666666665
Q ss_pred HHHHcCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 015590 188 SAAKLGV-EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDA 266 (404)
Q Consensus 188 ~~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 266 (404)
.+....- .|..+ .++-+... ....+++........-.|+..+|.+++..-..+|+.+.|..++.+|.+.|+..
T Consensus 164 ~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 5543211 11111 24443332 23333333332221115899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 015590 267 DTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKR 318 (404)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 318 (404)
+.+-|-.|+-+ .++...++.+.+.|.+.|+.|+..|+...+..+..+|.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99888777765 88899999999999999999999999999888888665
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=2.2e-08 Score=91.91 Aligned_cols=247 Identities=19% Similarity=0.128 Sum_probs=174.9
Q ss_pred HHHHHhhcCCHHHHHHHHhhcccC-----C-CCccHH-HHHHHHHHHHhcCcHhHHHHHHHHHHHc-----C--CCCCHh
Q 015590 134 IKIYGNMAGRISKAIETLFDMPSY-----N-CWPSVK-TFNLVLNLLVSAKLYGEIQGIYTSAAKL-----G--VEIDAC 199 (404)
Q Consensus 134 l~~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~~~~ 199 (404)
+...+...|++++|..+++...+. | ..|... ..+.+...|...+++++|..+|+.+... | .+.-..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 444444499999999999887553 2 123333 3455777889999999999999988753 2 122245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHchh-----CCC-CCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCC--
Q 015590 200 CLNILLKGLCENGNLEAAFYVLDEFPK-----QNC-EPNVR-TYSTLMHGLCEKGNVEEAFGLLERMESE---GIDAD-- 267 (404)
Q Consensus 200 ~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~-~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~-- 267 (404)
+++.|..+|.+.|++++|...++...+ .|. .|.+. .++.+...|...+++++|..+++...+. -+.++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 677788889999999988888776543 121 23333 3566777888999999999999876432 12222
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-----C-CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CC
Q 015590 268 --TVTFNILISGLRKQGKVEEGMKLLERMKGK-----G-CYP-NSASYQEVLYGLLDKKRFPEAKELVGRMICE----RM 334 (404)
Q Consensus 268 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~ 334 (404)
..+++.|...|.+.|++++|+++|++.... | ..+ ....++.|...|.+.++..+|.++|.+...- |.
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 357899999999999999999999987643 1 122 2456788888999999999999999875532 32
Q ss_pred -CCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHC------CCCCCHHhHHHHH
Q 015590 335 -SPS-FVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ------GFVPRMGMWREIV 380 (404)
Q Consensus 335 -~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~ll 380 (404)
.|+ ..+|..|...|...|+++.|.++.+..... ...|+........
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRL 498 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhh
Confidence 233 468899999999999999999999887631 3445554444433
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.14 E-value=1.5e-07 Score=87.55 Aligned_cols=290 Identities=13% Similarity=0.059 Sum_probs=198.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHH-h
Q 015590 97 IINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLV-S 175 (404)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~ 175 (404)
....+...|++++|++.++.-... .++...+......++.+.|+.++|..+|..+.+.+ |+...|...+..+. -
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhh
Confidence 345678999999999999875433 24556666666667767999999999999999987 77776655554443 1
Q ss_pred -----cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH-HHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCH
Q 015590 176 -----AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLE-AAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNV 249 (404)
Q Consensus 176 -----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 249 (404)
..+.+...++|+++...- |.......+.-.+.....+. .+...+..+...|+|+ +|+.+-..|......
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 235778888999887653 33333333322222222333 4455566677777543 455555666655555
Q ss_pred HHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHH
Q 015590 250 EEAFGLLERMESE----G----------IDADTV--TFNILISGLRKQGKVEEGMKLLERMKGKGCYPN-SASYQEVLYG 312 (404)
Q Consensus 250 ~~A~~~~~~m~~~----~----------~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~ 312 (404)
+-...++...... + -.|+.. ++..+...|...|+.++|+.+.++..+. .|+ +..|..-...
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 5555666555432 1 124443 4456678888999999999999999988 555 5778888889
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHh------H--HHHHHhhc
Q 015590 313 LLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGM------W--REIVGCVT 384 (404)
Q Consensus 313 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------~--~~ll~~~~ 384 (404)
+-+.|++.+|.+.++..+..+ .-|...=+-....+.+.|++++|.+++....+.+..|-... | ...-.+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764 34555666667888999999999999999988776443321 1 12224677
Q ss_pred cCCCCcchhhHHHhh
Q 015590 385 FGKDNRNRVYVTETV 399 (404)
Q Consensus 385 ~~~~~~~~~~~~~~~ 399 (404)
+.|+...+..-+..+
T Consensus 317 r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 317 RQGDYGLALKRFHAV 331 (517)
T ss_pred HHhhHHHHHHHHHHH
Confidence 777776665555444
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=5.1e-08 Score=77.94 Aligned_cols=197 Identities=12% Similarity=-0.047 Sum_probs=130.3
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHH
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLC 244 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 244 (404)
+...+.-.|.+.|+...|..-+++.++.. +.+..+|..+...|-+.|+.+.|.+.|+...+.. +.+..+.|..-.-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 44555666777777777777777777765 4556677777777777777777777777766654 455566666666777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 015590 245 EKGNVEEAFGLLERMESEGIDA-DTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAK 323 (404)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 323 (404)
..|++++|...|++....-.-+ -..||..+.-+..+.|+.+.|...|++..+.... ...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 7777777777777766542111 2346666666667777777777777777666311 3345566666677777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 324 ELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 324 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
.+++.....+. ++.....--|+.-...|+.+.+-++=..+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77777766543 666666666666667777666666555554
No 71
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=7e-07 Score=78.77 Aligned_cols=330 Identities=10% Similarity=-0.015 Sum_probs=172.9
Q ss_pred CCCccchhhc--ccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 015590 41 QDSDHHAYKL--NHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIK 118 (404)
Q Consensus 41 ~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 118 (404)
.-++++|.+- =+|+...|++.|..=.+-+..+.|..+|+...- +.|+..+|-.....=-++|++..+..+|+...
T Consensus 158 ~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 158 AGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344444431 246666777777776666777777777776643 24666666666666666777777777776654
Q ss_pred hcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCC----------------------------------------
Q 015590 119 VEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYN---------------------------------------- 158 (404)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---------------------------------------- 158 (404)
+.-....-...+......+-..+..++.|.-+|+-..+.=
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 3321101111222222222223444444444443332210
Q ss_pred ---CCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCH--hHHH--------HHHHHHHhcCChHHHHHHHHHch
Q 015590 159 ---CWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDA--CCLN--------ILLKGLCENGNLEAAFYVLDEFP 225 (404)
Q Consensus 159 ---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~--------~li~~~~~~g~~~~a~~~~~~~~ 225 (404)
-+-|-.+|--.++.-...|+.+...++|+..+..- +|-. ..|. -.+-.-....+++.+.++|+...
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 01122333334444444455555555555554432 2211 0010 01111122345555555555444
Q ss_pred hCCCCCcHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 015590 226 KQNCEPNVRTYSTLMHG----LCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYP 301 (404)
Q Consensus 226 ~~~~~~~~~~~~~li~~----~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 301 (404)
+. +|....||.-+=-. -.++.++..|.+++.... |.-|-..+|...|..-.+.+++|.+..+|++..+-+. -
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-E 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-H
Confidence 42 12223333322222 234455555655555443 3456666777777777777788888888888777642 2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 015590 302 NSASYQEVLYGLLDKKRFPEAKELVGRMICER-MSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIV 380 (404)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 380 (404)
+..+|.-....-...|+.+.|..+|.-.+... +......|.+.|+-=...|.+++|+.+++.+++. .+...+|-++.
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence 55667666666667788888888888776531 1223345666666666788888888888888754 23333444443
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=1.6e-07 Score=75.09 Aligned_cols=191 Identities=9% Similarity=0.016 Sum_probs=98.8
Q ss_pred HHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCCh-HHHHHHHHHHHhhc
Q 015590 63 KIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSD-GFFYNVIKIYGNMA 141 (404)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 141 (404)
-.|.+.|++..|..-+++.++.. +.+..+|..+...|-+.|..+.|.+-|+...... |.+ .+.+|.-..+|. .
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---p~~GdVLNNYG~FLC~-q 116 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---PNNGDVLNNYGAFLCA-Q 116 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CCccchhhhhhHHHHh-C
Confidence 35555566666666666665442 3334455555556666666666666666554433 223 233333333333 5
Q ss_pred CCHHHHHHHHhhcccCCCCc-cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 142 GRISKAIETLFDMPSYNCWP-SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 142 g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
|++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 56666666666554421111 12355555555555666666666666555543 23334444555555555666666555
Q ss_pred HHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015590 221 LDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMES 261 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 261 (404)
++.....+ .++..+.-.-|..--..|+.+.+-+.=..+..
T Consensus 196 ~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555544 25555555555555555555555554444443
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.02 E-value=2.9e-07 Score=84.66 Aligned_cols=238 Identities=16% Similarity=0.152 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHc-----CC-CCCHh-HHHHHHHHHHhcCChHHHHHHHHHchhC-----C--
Q 015590 163 VKTFNLVLNLLVSAKLYGEIQGIYTSAAKL-----GV-EIDAC-CLNILLKGLCENGNLEAAFYVLDEFPKQ-----N-- 228 (404)
Q Consensus 163 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-- 228 (404)
..+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346777999999999999999999988765 21 23333 3345778899999999999999988642 2
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhhC---C
Q 015590 229 CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE-----GID-ADT-VTFNILISGLRKQGKVEEGMKLLERMKGK---G 298 (404)
Q Consensus 229 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~ 298 (404)
.+.-..+++.|..+|.+.|++++|...+++..+- |.. |.. ..++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1222346777788899999999988888776431 222 222 23567778889999999999999876543 1
Q ss_pred CCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHH-
Q 015590 299 CYPN----SASYQEVLYGLLDKKRFPEAKELVGRMICE------RMSPS-FVSYKKLIHGLCNQKLVEDVDWVLKKMVQ- 366 (404)
Q Consensus 299 ~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 366 (404)
+.++ ..+++.|...|...|++++|++++++++.. +..+. -..++.+...|.+.+.+++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1222 367899999999999999999999988754 11222 34677788899999999999999887543
Q ss_pred ---CCC-CCCH-HhHHHHHHhhccCCCCcchhhHHHhhh
Q 015590 367 ---QGF-VPRM-GMWREIVGCVTFGKDNRNRVYVTETVD 400 (404)
Q Consensus 367 ---~~~-~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~ 400 (404)
.|. .|+. .+|.-|...|..-|+.+.+.++.+.+-
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 232 2333 478889999999999999998887653
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=9.3e-07 Score=78.31 Aligned_cols=295 Identities=10% Similarity=0.032 Sum_probs=200.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhCCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHH--HH
Q 015590 60 EVLKIFSNLRDPISVISVLNQYSKRKDYNPN-EALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVI--KI 136 (404)
Q Consensus 60 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l--~~ 136 (404)
..-.-|.++|.+++|+..|.+.+.. .|| +.-|.....+|...|+|++..+--....+.+ +...-.++ ..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-----P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-----PDYVKALLRRAS 191 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-----cHHHHHHHHHHH
Confidence 4455678889999999999999864 677 7778888999999999999888877765543 22222222 22
Q ss_pred HHhhcCCHHHHHHHH------hh-------------------------ccc--CCCCccHHHHHHHHHHHHh--------
Q 015590 137 YGNMAGRISKAIETL------FD-------------------------MPS--YNCWPSVKTFNLVLNLLVS-------- 175 (404)
Q Consensus 137 ~~~~~g~~~~A~~~~------~~-------------------------m~~--~~~~p~~~~~~~ll~~~~~-------- 175 (404)
.....|++++|+.=. +. +.+ ..+-|+.....+....+..
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 223378888876532 11 111 1122443333333322210
Q ss_pred c-----------------C---cHhHHHHHHHHHHHc---CCCCC---------HhHHHHHHHHHHhcCChHHHHHHHHH
Q 015590 176 A-----------------K---LYGEIQGIYTSAAKL---GVEID---------ACCLNILLKGLCENGNLEAAFYVLDE 223 (404)
Q Consensus 176 ~-----------------~---~~~~a~~~~~~~~~~---g~~~~---------~~~~~~li~~~~~~g~~~~a~~~~~~ 223 (404)
. + .+.++.+.+.+-... ....+ ..+.......+.-+|+...|..-|+.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 0 0 111222222111110 00111 12222233345567888999999998
Q ss_pred chhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCCh
Q 015590 224 FPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNS 303 (404)
Q Consensus 224 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 303 (404)
.++.. +.+...|--+..+|.+.++.++....|++....+.. |+.+|..=...+.-.+++++|..=|++...... -+.
T Consensus 352 ~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~ 428 (606)
T KOG0547|consen 352 AIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENA 428 (606)
T ss_pred HHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhh
Confidence 88775 233333888888999999999999999999887655 667787777777778999999999999987732 145
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 304 ASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 304 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
..|..+..+..+.+++++++..|++.+++ ++..+..|+-....+...+++++|.+.|+..++
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 66777777777889999999999999876 677788999999999999999999999999884
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=1.2e-07 Score=82.05 Aligned_cols=252 Identities=13% Similarity=0.083 Sum_probs=159.6
Q ss_pred HHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhc
Q 015590 62 LKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMA 141 (404)
Q Consensus 62 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (404)
++-+.-.|++..++.-.+ . ....-..+......+.+++...|+++.+ ...+.... .+......++..|....
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~-~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~---~~~l~av~~la~y~~~~ 79 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-L-KSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS---SPELQAVRLLAEYLSSP 79 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-C-HTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS---SCCCHHHHHHHHHHCTS
T ss_pred HHHHHHhhhHHHHHHHhh-c-cCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC---ChhHHHHHHHHHHHhCc
Confidence 345566788888887666 2 2221122345566777888888887643 34443222 33333445566666534
Q ss_pred CCHHHHHHHHhhcccCCCCc-cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 142 GRISKAIETLFDMPSYNCWP-SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 142 g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
++-+.++.-+++....+..+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 56677777776665544332 3333333334566789999998887532 3566677788899999999999999
Q ss_pred HHHchhCCCCCcHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 015590 221 LDEFPKQNCEPNVRTYSTLMHG----LCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~li~~----~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
++.|.+.+ .|.. -..+..+ +...+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|..++.+...
T Consensus 154 l~~~~~~~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 154 LKNMQQID--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHCCS--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHhcC--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99998763 3432 2223333 33344688999999998654 456788888888888999999999999988877
Q ss_pred CCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHC
Q 015590 297 KGCYPNSASYQEVLYGLLDKKRF-PEAKELVGRMICE 332 (404)
Q Consensus 297 ~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~ 332 (404)
.+. -++.+...++.+....|+. +.+.+++.++...
T Consensus 230 ~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 230 KDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 642 2567777788877778877 6677788887764
No 76
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.7e-07 Score=82.12 Aligned_cols=251 Identities=9% Similarity=0.019 Sum_probs=194.0
Q ss_pred ccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHH
Q 015590 51 NHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFF 130 (404)
Q Consensus 51 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (404)
.+++...+..-|..+...|+..+-..+=.++.+. .|..+.+|-++.--|.-.|+..+|++.|.+....+ +.-...+
T Consensus 274 dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD--~~fgpaW 349 (611)
T KOG1173|consen 274 DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD--PTFGPAW 349 (611)
T ss_pred CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC--ccccHHH
Confidence 4455666777788999999988888888888654 47778899999999999999999999999976554 1112233
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhccc--CC-CCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 015590 131 YNVIKIYGNMAGRISKAIETLFDMPS--YN-CWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKG 207 (404)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~m~~--~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 207 (404)
...-..|.. .|..|.|...+....+ .| ..| +--+.--|.+.++.+.|.++|.+..... |.|+.+.+-+.-.
T Consensus 350 l~fghsfa~-e~EhdQAmaaY~tAarl~~G~hlP----~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 350 LAFGHSFAG-EGEHDQAMAAYFTAARLMPGCHLP----SLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVV 423 (611)
T ss_pred HHHhHHhhh-cchHHHHHHHHHHHHHhccCCcch----HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhhe
Confidence 344455555 8899999888876544 12 112 2223445778999999999999998775 7788999999988
Q ss_pred HHhcCChHHHHHHHHHchhC----C--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 015590 208 LCENGNLEAAFYVLDEFPKQ----N--CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQ 281 (404)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 281 (404)
....+.+.+|..+|+..... + ...-..+++.+..+|.+.+.+++|+..|++......+ |..++.++.-.|...
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~ll 502 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLL 502 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHh
Confidence 88999999999999876521 1 0123456888899999999999999999998877554 889999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 015590 282 GKVEEGMKLLERMKGKGCYPNSASYQEVLYGLL 314 (404)
Q Consensus 282 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 314 (404)
|+++.|.+.|.+.... .|+..+...++..+.
T Consensus 503 gnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 503 GNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred cChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 9999999999998866 788777777776443
No 77
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=6.2e-07 Score=74.49 Aligned_cols=291 Identities=13% Similarity=0.052 Sum_probs=199.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHH-HHHHHH
Q 015590 58 PTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFF-YNVIKI 136 (404)
Q Consensus 58 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~l~~ 136 (404)
+++++.-+.+..++..|++++..-.++. +.+....+.+..+|-...++..|-..++.+...- |....+ ..-..+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence 4566667778888999999988776543 4477888889999999999999999999986542 222211 223455
Q ss_pred HHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHH--HHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 015590 137 YGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNL--LVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNL 214 (404)
Q Consensus 137 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 214 (404)
++. .+.+..|+++...|.+. |+...-..-+.+ ....+++..+..+.++....| +..+.+.......+.|++
T Consensus 88 LY~-A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 88 LYK-ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHH-hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 565 89999999999998873 332221112222 335678888888888776433 444555555666788999
Q ss_pred HHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-------------CCH-------------
Q 015590 215 EAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGID-------------ADT------------- 268 (404)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-------------p~~------------- 268 (404)
+.|.+-|+...+-+--.....||.-+.. .+.|+.+.|++...++.++|++ ||.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 9999999988775434556678766654 4568899999999999888754 221
Q ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015590 269 --VTFNILISGLRKQGKVEEGMKLLERMKGK-GCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLI 345 (404)
Q Consensus 269 --~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 345 (404)
..+|.-...+.+.|+.+.|.+-+.+|..+ ....|++|...+.-.- ..+++.+..+-++-+.... +-...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHH
Confidence 11333334456778999999999888765 4456777776654332 2345656666666665543 23557888888
Q ss_pred HHHHcCCChHHHHHHHHH
Q 015590 346 HGLCNQKLVEDVDWVLKK 363 (404)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~ 363 (404)
-.||++.-++-|..++.+
T Consensus 318 llyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhhhHHHhHHHHHHhh
Confidence 899999888888888765
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.94 E-value=1.4e-05 Score=73.48 Aligned_cols=183 Identities=13% Similarity=0.060 Sum_probs=122.1
Q ss_pred cccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHH
Q 015590 50 LNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGF 129 (404)
Q Consensus 50 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 129 (404)
....+.+.|..+--.+...+++++|+..|..+++-. +-|...|.-+.-.-++.|+++..........+.. |+...
T Consensus 70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~---~~~ra 144 (700)
T KOG1156|consen 70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR---PSQRA 144 (700)
T ss_pred cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---hhhHH
Confidence 345678899988877778889999999999998643 4566777777666778888888877777766543 44444
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcccCC-CCccHHHHHHHH------HHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHH
Q 015590 130 FYNVIKIYGNMAGRISKAIETLFDMPSYN-CWPSVKTFNLVL------NLLVSAKLYGEIQGIYTSAAKLGVEIDACCLN 202 (404)
Q Consensus 130 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 202 (404)
.|..........|++..|..+.++..+.. -.|+...|.... ....+.|..++|.+....-... +.-....-.
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e 223 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhh
Confidence 44433333333899999999988876633 235555554332 3345677777777776655433 111222334
Q ss_pred HHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHH
Q 015590 203 ILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLM 240 (404)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 240 (404)
+-.+.+.+.+++++|..++..+... .||..-|...+
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l 259 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGL 259 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHH
Confidence 4566778888888888888888877 35655555443
No 79
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.94 E-value=2.7e-05 Score=71.61 Aligned_cols=308 Identities=17% Similarity=0.170 Sum_probs=170.6
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------------
Q 015590 56 LSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEK-------------- 121 (404)
Q Consensus 56 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------------- 121 (404)
..|...+.-....+-|+.++.+|++.++. ++..-+--|..+++.+++++|.+.+..+...+
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw 213 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLW 213 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHH
Confidence 46778888888888888899999888753 33445666777788888888887776543211
Q ss_pred --------------------------cCCCCh--HHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHH
Q 015590 122 --------------------------LCRFSD--GFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLL 173 (404)
Q Consensus 122 --------------------------~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 173 (404)
....++ ...|.-+..|+.+.|.+++|.++|++....- .++.-|..+-++|
T Consensus 214 ~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Y 291 (835)
T KOG2047|consen 214 LELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAY 291 (835)
T ss_pred HHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHH
Confidence 111111 2345556666666888888888887755421 2222233332222
Q ss_pred Hh------------------------------------------------------------------cCcHhHHHHHHH
Q 015590 174 VS------------------------------------------------------------------AKLYGEIQGIYT 187 (404)
Q Consensus 174 ~~------------------------------------------------------------------~~~~~~a~~~~~ 187 (404)
+. .|+..+....|.
T Consensus 292 a~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyt 371 (835)
T KOG2047|consen 292 AQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYT 371 (835)
T ss_pred HHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHH
Confidence 11 111222222222
Q ss_pred HHHHcCCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015590 188 SAAKLGVEI------DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPN---VRTYSTLMHGLCEKGNVEEAFGLLER 258 (404)
Q Consensus 188 ~~~~~g~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~ 258 (404)
++.+. +.| -...|..+.+.|-..|+++.|..+|++..+...+.- ..+|......=.++.+++.|+.+.+.
T Consensus 372 eAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 372 EAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred HHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 22221 111 122466677778888888888888888776543221 34566666666677778888887776
Q ss_pred HHHCCCC----------C-------CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 015590 259 MESEGID----------A-------DTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPE 321 (404)
Q Consensus 259 m~~~~~~----------p-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 321 (404)
....--. | +...|...++.....|-++....+|+++.+..+. ++.......-.+-.+.-+++
T Consensus 451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHH
Confidence 5432111 1 2234555555555667777777788777766433 22222222222334444556
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHc---CCChHHHHHHHHHHHHCCCCCCH
Q 015590 322 AKELVGRMICERMSPSF-VSYKKLIHGLCN---QKLVEDVDWVLKKMVQQGFVPRM 373 (404)
Q Consensus 322 a~~~~~~~~~~~~~p~~-~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~ 373 (404)
+.+++++-+..=..|+. ..|+..+.-+.+ ....+.|+.+|++.++ |..|..
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 66665554433112332 355555544433 2246677777776665 454443
No 80
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.91 E-value=8e-07 Score=87.81 Aligned_cols=236 Identities=12% Similarity=0.036 Sum_probs=187.3
Q ss_pred cc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHc-CCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHH
Q 015590 161 PS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKL-GVE---IDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRT 235 (404)
Q Consensus 161 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 235 (404)
|| ...|-..|....+.++.++|.++.+++... ++. --...|.++++.-..-|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 55 457888899999999999999999998754 111 12357888888888888888999999999875 234567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHH
Q 015590 236 YSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPN---SASYQEVLYG 312 (404)
Q Consensus 236 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~ 312 (404)
|..|...|.+.+.+++|.++|+.|.++-- -....|...+..+.+..+-+.|..++.+..+. -|. .....-.+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 88999999999999999999999987622 36778999999999999999999999998876 343 3344445556
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH--hHHHHHHhhccCCCCc
Q 015590 313 LLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMG--MWREIVGCVTFGKDNR 390 (404)
Q Consensus 313 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~ 390 (404)
-.+.|+.+.+..+|+..... .+--...|+..++.-.++|+.+.++.+|++.+..++.|-.. .|...+..=...|+.+
T Consensus 1610 EFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 67889999999999998876 23456789999999999999999999999999988887643 6777776666778888
Q ss_pred chhhHHHhhhhh
Q 015590 391 NRVYVTETVDSL 402 (404)
Q Consensus 391 ~~~~~~~~~~~~ 402 (404)
++++|-..-.++
T Consensus 1689 ~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1689 NVEYVKARAKEY 1700 (1710)
T ss_pred hHHHHHHHHHHH
Confidence 888876655443
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=1.4e-07 Score=81.69 Aligned_cols=248 Identities=12% Similarity=0.064 Sum_probs=129.2
Q ss_pred HHHhcCCchHHHHHHHHHHhcccCCCChH-HHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCc
Q 015590 100 KLAQAKRFDAIEDIMQRIKVEKLCRFSDG-FFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKL 178 (404)
Q Consensus 100 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 178 (404)
-+--.|++..+..-.+ ..... +.... .-.....++.. .|+++.++ .++.... .|.......+...+....+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~--~~~~~e~~~~~~Rs~iA-lg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFS--PENKLERDFYQYRSYIA-LGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTST--CHHHHHHHHHHHHHHHH-TT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred HHHHhhhHHHHHHHhh-ccCCC--chhHHHHHHHHHHHHHH-cCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccc
Confidence 3445567776665444 21111 11111 12223344444 66666544 3333222 3555555444443333234
Q ss_pred HhHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015590 179 YGEIQGIYTSAAKLGVE-IDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLE 257 (404)
Q Consensus 179 ~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 257 (404)
-+.+..-+++....+.. .+..........+...|++++|+++++.- .+.......+..|.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444433333322 22222233334555667777777766543 245555667777777888888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH----cCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 015590 258 RMESEGIDADTVTFNILISGLR----KQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICER 333 (404)
Q Consensus 258 ~m~~~~~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 333 (404)
.|.+.+ +..+...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+
T Consensus 156 ~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 776542 2233333433332 234577788888887655 34566777777777777788888887777766543
Q ss_pred CCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHH
Q 015590 334 MSPSFVSYKKLIHGLCNQKLV-EDVDWVLKKMVQ 366 (404)
Q Consensus 334 ~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 366 (404)
+-+..+...++.+....|+. +.+.+++.++..
T Consensus 232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 33455566666666666766 566677777664
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=4.3e-06 Score=71.26 Aligned_cols=125 Identities=11% Similarity=0.086 Sum_probs=65.5
Q ss_pred HHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccC---------CCC-------
Q 015590 63 KIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLC---------RFS------- 126 (404)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~------- 126 (404)
..+.+.|++++|+..|....... .|+...+..|...+--.|.+.+|..+-....+.... ..+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 35667788888888888775533 566666666665555666777776665543211100 000
Q ss_pred --------hHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHH-HHHHhcCcHhHHHHHHHHHHHc
Q 015590 127 --------DGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVL-NLLVSAKLYGEIQGIYTSAAKL 192 (404)
Q Consensus 127 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~ 192 (404)
...-.++....+. .-.+++|++++.+....+ |+-...|.-+ -+|.+..-++-+.+++....+.
T Consensus 143 fh~~LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 0000111111111 334666777776665543 4444444433 3445666666666666655544
No 83
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.87 E-value=1.8e-05 Score=71.27 Aligned_cols=339 Identities=12% Similarity=0.116 Sum_probs=204.6
Q ss_pred ccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHH
Q 015590 51 NHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFF 130 (404)
Q Consensus 51 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (404)
++-|..+|+.||+-+... ..+++.+.++++... ++-.+..|..-|..-...++++..+.+|.++.... -+...
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv----LnlDL 88 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV----LNLDL 88 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----hhHhH
Confidence 556899999999887666 899999999999643 57778889999999999999999999999875322 12233
Q ss_pred HHHHHHHHhh---------------------------------------------------cCCHHHHHHHHhhcccCCC
Q 015590 131 YNVIKIYGNM---------------------------------------------------AGRISKAIETLFDMPSYNC 159 (404)
Q Consensus 131 ~~~l~~~~~~---------------------------------------------------~g~~~~A~~~~~~m~~~~~ 159 (404)
|.+-..|.++ +.+++...+++.++...-+
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 3333333221 2234455555655544211
Q ss_pred C------ccHHHHHHHHHHH-------HhcCcHhHHHHHHHHHHHc--CCCCCHh---------------HHHHHH----
Q 015590 160 W------PSVKTFNLVLNLL-------VSAKLYGEIQGIYTSAAKL--GVEIDAC---------------CLNILL---- 205 (404)
Q Consensus 160 ~------p~~~~~~~ll~~~-------~~~~~~~~a~~~~~~~~~~--g~~~~~~---------------~~~~li---- 205 (404)
. .|-..|..=|+.. -+...+..|.++++++... |...... .|-.+|
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 0 0111121111111 1234566777777766421 2111100 011111
Q ss_pred ---------------------------------------------HHHHhcCCh-------HHHHHHHHHchhCCCCCcH
Q 015590 206 ---------------------------------------------KGLCENGNL-------EAAFYVLDEFPKQNCEPNV 233 (404)
Q Consensus 206 ---------------------------------------------~~~~~~g~~-------~~a~~~~~~~~~~~~~~~~ 233 (404)
+.+...|+. +++..+++.....-...+.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 112222222 2333333333221111222
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC-ChhhHHH
Q 015590 234 RTYSTLMHGLCE---KGNVEEAFGLLERMESE-GIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYP-NSASYQE 308 (404)
Q Consensus 234 ~~~~~li~~~~~---~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ 308 (404)
.+|..+.+---. .+..+.....++++... ...| ..+|..+++.-.+..-++.|..+|.+..+.+..+ ++..+++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 233322221111 11245555566665543 2333 3567778888888888999999999999887666 6677788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH--HhHHHHHHhhccC
Q 015590 309 VLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRM--GMWREIVGCVTFG 386 (404)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~ 386 (404)
++.-+| .++.+.|.++|+--.+. ..-++.--...++-+.+.++-..++.+|++....++.||. ..|..+|.-=..-
T Consensus 408 ~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 408 LMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred HHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 888665 46788999999876654 3334445566778888889999999999999988666664 4799988877777
Q ss_pred CCCcchhhHHHhh
Q 015590 387 KDNRNRVYVTETV 399 (404)
Q Consensus 387 ~~~~~~~~~~~~~ 399 (404)
|+...+..+.+..
T Consensus 486 GdL~si~~lekR~ 498 (656)
T KOG1914|consen 486 GDLNSILKLEKRR 498 (656)
T ss_pred ccHHHHHHHHHHH
Confidence 8888877777654
No 84
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=3.5e-09 Score=58.87 Aligned_cols=29 Identities=52% Similarity=1.017 Sum_probs=11.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015590 230 EPNVRTYSTLMHGLCEKGNVEEAFGLLER 258 (404)
Q Consensus 230 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 258 (404)
.||..|||+||.+|++.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34444444444444444444444444433
No 85
>PF12854 PPR_1: PPR repeat
Probab=98.86 E-value=4e-09 Score=58.63 Aligned_cols=32 Identities=44% Similarity=0.823 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015590 263 GIDADTVTFNILISGLRKQGKVEEGMKLLERM 294 (404)
Q Consensus 263 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 294 (404)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=4.1e-05 Score=69.73 Aligned_cols=318 Identities=18% Similarity=0.145 Sum_probs=189.6
Q ss_pred HHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhc
Q 015590 62 LKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMA 141 (404)
Q Consensus 62 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (404)
++.+...+++++|....++.+.. .+-+...+..=+-++.+.++|++|..+.+.-.. .......++.-....++ .
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Yr-l 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCEYR-L 92 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHHHH-c
Confidence 44566778999999999998643 355667777777888899999999866654221 11122222344444555 8
Q ss_pred CCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCC-------------------------
Q 015590 142 GRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEI------------------------- 196 (404)
Q Consensus 142 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------------------- 196 (404)
+..++|+..++-... -|..+...-...+.+.+++++|..+|+.+.+++.+-
T Consensus 93 nk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred ccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 999999999983332 123355555677889999999999999986554211
Q ss_pred --CHhHHHHH---HHHHHhcCChHHHHHHHHHchhC-------C------CCCcHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 015590 197 --DACCLNIL---LKGLCENGNLEAAFYVLDEFPKQ-------N------CEPNVR-TYSTLMHGLCEKGNVEEAFGLLE 257 (404)
Q Consensus 197 --~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~-------~------~~~~~~-~~~~li~~~~~~~~~~~A~~~~~ 257 (404)
...+|..+ ...+...|++.+|+++++...+. + +.-+.. .---+.-.+...|+.++|..++.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 01133333 33466789999999999887221 1 000111 12234556778999999999999
Q ss_pred HHHHCCCCCCHHH----HHHH-----------------------------------------------HHHHHcCCCHHH
Q 015590 258 RMESEGIDADTVT----FNIL-----------------------------------------------ISGLRKQGKVEE 286 (404)
Q Consensus 258 ~m~~~~~~p~~~~----~~~l-----------------------------------------------i~~~~~~g~~~~ 286 (404)
........ |... -|.| +..|. +..+.
T Consensus 249 ~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q 325 (652)
T KOG2376|consen 249 DIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQ 325 (652)
T ss_pred HHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHH
Confidence 88876432 2211 1111 11111 11122
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH--
Q 015590 287 GMKLLERMKGKGCYPNSASYQEVLYGLLDK--KRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLK-- 362 (404)
Q Consensus 287 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~-- 362 (404)
+.++-.... +..|. ..+.+++..+.+. ....++.+++...-+....-.....-.++......|+++.|.+++.
T Consensus 326 ~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 326 VRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 222211111 11233 3344444443322 2467777777777665322234566667788889999999999999
Q ss_pred ------HHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHH
Q 015590 363 ------KMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTE 397 (404)
Q Consensus 363 ------~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 397 (404)
.+.+.+..|.. ...++.-+.+.++.+.+..++.
T Consensus 403 ~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~ 441 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLD 441 (652)
T ss_pred hhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHH
Confidence 66655555554 4455566667676666655543
No 87
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.80 E-value=4.3e-05 Score=70.30 Aligned_cols=340 Identities=12% Similarity=0.062 Sum_probs=200.4
Q ss_pred CCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCC----------------------chHHHH
Q 015590 55 WLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKR----------------------FDAIED 112 (404)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~----------------------~~~a~~ 112 (404)
.+.|++|-.-|.+.|.++.|.++|++.++. ..+..-|+.+.++|+.... ++....
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 346888888888899999999998888754 3344555555555553211 122222
Q ss_pred HHHHHHhcccCCCChHH-------HHHHHHHHHhhcCCHHHHHHHHhhcccCCCCcc------HHHHHHHHHHHHhcCcH
Q 015590 113 IMQRIKVEKLCRFSDGF-------FYNVIKIYGNMAGRISKAIETLFDMPSYNCWPS------VKTFNLVLNLLVSAKLY 179 (404)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~~~ 179 (404)
.|+.+........++.. +..-+.......|+..+-...|.+.... +.|. ...|..+.+.|-..|+.
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 33333222211011100 0000111111146666666666665431 1121 24688889999999999
Q ss_pred hHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHchhCC-----------CC------CcHHHHHHH
Q 015590 180 GEIQGIYTSAAKLGVEID---ACCLNILLKGLCENGNLEAAFYVLDEFPKQN-----------CE------PNVRTYSTL 239 (404)
Q Consensus 180 ~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~------~~~~~~~~l 239 (404)
+.|..+|++..+-..+-- ..+|.....+=.+..+++.|+++.+.....- .+ .+...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999999887654322 4567777777777888999999888765321 11 123456677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhc--
Q 015590 240 MHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNS-ASYQEVLYGLLDK-- 316 (404)
Q Consensus 240 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~-- 316 (404)
++.--..|-++....+|+++.+..+- ++..-......+..+.-++++.++|++-...=..|+. ..|+..+.-+.+.
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 77777788888899999998877554 3333222333344556678888888766555223444 4666666655543
Q ss_pred -CChhHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHcCCChHHHHHHHHHHHHCCCCCCH--HhHHHHHH-hhccCCCCc
Q 015590 317 -KRFPEAKELVGRMICERMSPSFVSYKKLI--HGLCNQKLVEDVDWVLKKMVQQGFVPRM--GMWREIVG-CVTFGKDNR 390 (404)
Q Consensus 317 -g~~~~a~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~-~~~~~~~~~ 390 (404)
..++.|..+|++..+ |.+|...-+--++ ..=-+.|....|+.++++... ++.+.. ..|+..|. +-..-|-..
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 468899999999988 5665443222222 222346888888888888654 344432 35776665 333445544
Q ss_pred chhhHHHhhhh
Q 015590 391 NRVYVTETVDS 401 (404)
Q Consensus 391 ~~~~~~~~~~~ 401 (404)
......+.|++
T Consensus 641 TR~iYekaIe~ 651 (835)
T KOG2047|consen 641 TREIYEKAIES 651 (835)
T ss_pred cHHHHHHHHHh
Confidence 44444444443
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.76 E-value=4.6e-05 Score=70.15 Aligned_cols=194 Identities=13% Similarity=0.040 Sum_probs=108.4
Q ss_pred CCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHH
Q 015590 68 LRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKA 147 (404)
Q Consensus 68 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 147 (404)
.|+-++|....+..++. -..+.+.|..+.-.+....++++|.+.|..+...+ +++..++.=+..+-.+.++++..
T Consensus 54 lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~---~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE---KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred ccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhhhH
Confidence 35555555555555432 23345555555555555556666666666554433 44444444333333335555555
Q ss_pred HHHHhhcccCCCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCC-CCCHhHHHHHH------HHHHhcCChHHHHH
Q 015590 148 IETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGV-EIDACCLNILL------KGLCENGNLEAAFY 219 (404)
Q Consensus 148 ~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li------~~~~~~g~~~~a~~ 219 (404)
.....++.+.. |+ ...|.....+..-.|++..|..+.++..+... .|+...+.-.. ....+.|..++|.+
T Consensus 129 ~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 129 LETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 55555544432 32 23556666666667777777777777766542 35554443322 23445566677766
Q ss_pred HHHHchhCCCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 015590 220 VLDEFPKQNCEPNVRTY-STLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFN 272 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 272 (404)
.+..-... ..|...+ -.-...+.+.+++++|..++..+... .||...|.
T Consensus 207 ~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy 256 (700)
T KOG1156|consen 207 HLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYY 256 (700)
T ss_pred HHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHH
Confidence 66554432 2222222 23456678889999999999999887 56665553
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.5e-05 Score=69.44 Aligned_cols=267 Identities=12% Similarity=0.051 Sum_probs=191.0
Q ss_pred CCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHH
Q 015590 53 KDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNE-ALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFY 131 (404)
Q Consensus 53 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 131 (404)
.|+.....+-..+...|+.++|...|++..- +.|+. .....-.-.+.+.|+++....+...+-... ..+...+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wf 304 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWF 304 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhh
Confidence 3555667788899999999999999999853 23433 223333334567888888888777764332 12223333
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 015590 132 NVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCEN 211 (404)
Q Consensus 132 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 211 (404)
......+. ..+++.|+.+-++-.+.+ +.+...|-.-.+.+...++.++|.=.|+...... |.+...|.-|+..|...
T Consensus 305 V~~~~l~~-~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 305 VHAQLLYD-EKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhh-hhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 33333444 689999999999887754 2344566666678889999999999999988765 67889999999999999
Q ss_pred CChHHHHHHHHHchhCCCCCcHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHH
Q 015590 212 GNLEAAFYVLDEFPKQNCEPNVRTYSTLM-HGLC-EKGNVEEAFGLLERMESEGIDAD-TVTFNILISGLRKQGKVEEGM 288 (404)
Q Consensus 212 g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~ 288 (404)
|.+.+|.-.-++....= +.+..+.+.+. ..+. ....-++|..++++-... .|+ ....+.+...+...|..+.+.
T Consensus 382 ~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHH
Confidence 99999877665543321 23444444331 2222 122347788888776654 454 334566777788899999999
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 289 KLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
.++++.... .||....+.|.+.+...+.+.+|++.|......
T Consensus 459 ~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 459 KLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999998877 789999999999999999999999999988764
No 90
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=2e-05 Score=69.27 Aligned_cols=181 Identities=12% Similarity=0.039 Sum_probs=77.7
Q ss_pred HhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh--HHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 015590 179 YGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNL--EAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLL 256 (404)
Q Consensus 179 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 256 (404)
+++++..++.+.+.. +.+..+|+..--.+.+.|+. +++...++.+.+.. +.|..+|+.....+...|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344444444444332 22333333333333333331 33444444444433 344445555544555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcC---CC----HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----CChhHHHHH
Q 015590 257 ERMESEGIDADTVTFNILISGLRKQ---GK----VEEGMKLLERMKGKGCYPNSASYQEVLYGLLDK----KRFPEAKEL 325 (404)
Q Consensus 257 ~~m~~~~~~p~~~~~~~li~~~~~~---g~----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~ 325 (404)
+++.+.++. |...|+.....+.+. |. .++......++.... +-|...|+-+...+... +...+|.++
T Consensus 166 ~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 555444333 334444333333222 11 123444443444332 11334444444444442 223345555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCC------------------ChHHHHHHHHHH
Q 015590 326 VGRMICERMSPSFVSYKKLIHGLCNQK------------------LVEDVDWVLKKM 364 (404)
Q Consensus 326 ~~~~~~~~~~p~~~~~~~li~~~~~~g------------------~~~~a~~~~~~m 364 (404)
+.+....+ ..+......|++.|+... ..++|.++++.+
T Consensus 244 ~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 244 CLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 55544322 234445555555555421 236677777777
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=3.5e-06 Score=71.57 Aligned_cols=186 Identities=9% Similarity=-0.001 Sum_probs=123.3
Q ss_pred ccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHH---
Q 015590 161 PSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDA---CCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVR--- 234 (404)
Q Consensus 161 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--- 234 (404)
.....+..+...+.+.|++++|...++++.+.. +.+. .++..+..++.+.|++++|...++.+.+.. +.+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 345677778888889999999999999887763 2222 466778888899999999999999887653 21222
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhH
Q 015590 235 TYSTLMHGLCEK--------GNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASY 306 (404)
Q Consensus 235 ~~~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 306 (404)
++..+..++.+. |++++|.+.|+.+...... +...+..+..... ... .. ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 344555555544 6778888888888766322 2222222211100 000 00 0111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 015590 307 QEVLYGLLDKKRFPEAKELVGRMICERM--SPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ 367 (404)
Q Consensus 307 ~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (404)
..+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455668888999999999999887521 223567888889999999999999988888643
No 92
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=1.7e-05 Score=69.75 Aligned_cols=212 Identities=8% Similarity=0.016 Sum_probs=114.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 015590 59 TEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAK-RFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIY 137 (404)
Q Consensus 59 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (404)
+.+-..+...+..++|+.+.+++++.. +-+..+|+..-.++...| +++++...++.+.... |.+...|+--...
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---pknyqaW~~R~~~ 115 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN---PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---CcchHHhHHHHHH
Confidence 344445555667777777777776542 223334555555555555 4677777777766544 3343344433222
Q ss_pred HhhcCC--HHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc---C
Q 015590 138 GNMAGR--ISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCEN---G 212 (404)
Q Consensus 138 ~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g 212 (404)
..+.|+ .++++.+++++.+.+ +-|..+|+...-++.+.|+++++++.++++++.+ +.+..+|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccc
Confidence 222343 256666776666654 2345667766666667777777777777777665 44555665555544443 2
Q ss_pred Ch----HHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015590 213 NL----EAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK----GNVEEAFGLLERMESEGIDADTVTFNILISGLR 279 (404)
Q Consensus 213 ~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 279 (404)
.. +........+.... +-|..+|+-+...+... +...+|...+.+....++. +......|+..|+
T Consensus 194 ~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~ 266 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC 266 (320)
T ss_pred cccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 22 23444444444443 45556666666655552 2234455555554443222 4444555555554
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.69 E-value=4.4e-06 Score=77.73 Aligned_cols=207 Identities=15% Similarity=0.210 Sum_probs=111.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------------------
Q 015590 60 EVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEK------------------ 121 (404)
Q Consensus 60 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------------------ 121 (404)
+.|+.|.+.|.|..|.+.-..- ..+..|......+..++.+..-+++|-++|+.+..-+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~---~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaiel 696 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALND---EELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIEL 696 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCH---HHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHH
Confidence 4688899999998887654322 2235566666666666666655666666665543110
Q ss_pred -cCCCChH--HHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCH
Q 015590 122 -LCRFSDG--FFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDA 198 (404)
Q Consensus 122 -~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 198 (404)
....|.. .............|+++.|...|-+.. ...-.+.+....++|.+|+.+++.+.... .-.
T Consensus 697 arfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s 765 (1636)
T KOG3616|consen 697 ARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TAS 765 (1636)
T ss_pred HHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--ccc
Confidence 0000000 000011111111333333333332211 11122334455667777777777776553 233
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015590 199 CCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGL 278 (404)
Q Consensus 199 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 278 (404)
.-|..+.+.|+..|+++.|+++|.+.- .++--|..|.++|+|++|.++-.+.. |.......|.+-..-+
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDL 834 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhH
Confidence 456667777888888888887776543 23445677788888888777755442 3344445555545555
Q ss_pred HcCCCHHHHHHHH
Q 015590 279 RKQGKVEEGMKLL 291 (404)
Q Consensus 279 ~~~g~~~~a~~~~ 291 (404)
-+.|++.+|+++|
T Consensus 835 dehgkf~eaeqly 847 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLY 847 (1636)
T ss_pred Hhhcchhhhhhee
Confidence 5566665555554
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=0.00011 Score=75.55 Aligned_cols=308 Identities=12% Similarity=0.067 Sum_probs=192.1
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhCCCC-----CCCH--HHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCC--hHHH
Q 015590 60 EVLKIFSNLRDPISVISVLNQYSKRKDY-----NPNE--ALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFS--DGFF 130 (404)
Q Consensus 60 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 130 (404)
.....+...|++++|...+........- .+.. .....+...+...|++++|...++........... ....
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3344556778999999988877543111 1111 12222334556889999999999887643111111 1122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcccC----CCC-ccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc----CCC---CCH
Q 015590 131 YNVIKIYGNMAGRISKAIETLFDMPSY----NCW-PSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL----GVE---IDA 198 (404)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~---~~~ 198 (404)
.+.+.......|++++|...+.+.... |-. +...++..+...+...|++++|...+++.... +.. ...
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 233333333489999999998877541 210 11234556667788899999999998876653 221 123
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHchhC----CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH--
Q 015590 199 CCLNILLKGLCENGNLEAAFYVLDEFPKQ----NCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDA-DTVTF-- 271 (404)
Q Consensus 199 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~-- 271 (404)
..+..+...+...|++++|...+.+.... +.......+..+...+...|+.++|...+.+........ ....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 34555666778889999999998876542 111123445556677888999999999998875421110 11111
Q ss_pred ---HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHH
Q 015590 272 ---NILISGLRKQGKVEEGMKLLERMKGKGCYPN---SASYQEVLYGLLDKKRFPEAKELVGRMICE----RMSPS-FVS 340 (404)
Q Consensus 272 ---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~ 340 (404)
...+..+...|+.+.|..++........... ...+..+..++...|+.++|...+++.... |..++ ..+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 1122445568999999999877654321111 111345666788889999999999987653 32222 245
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHC
Q 015590 341 YKKLIHGLCNQKLVEDVDWVLKKMVQQ 367 (404)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (404)
...+..++...|+.++|...+.+..+.
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566667888999999999999988865
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.68 E-value=4.7e-06 Score=70.77 Aligned_cols=184 Identities=10% Similarity=-0.014 Sum_probs=127.1
Q ss_pred ChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCcc-H---HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHh--
Q 015590 126 SDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPS-V---KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDAC-- 199 (404)
Q Consensus 126 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-- 199 (404)
.....+.....+.. .|++++|...|+++.... |+ . .++..+..++.+.|++++|...++.+.+.. +.+..
T Consensus 32 ~~~~~~~~g~~~~~-~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALD-SGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchH
Confidence 34556666677776 899999999999987754 43 2 467788899999999999999999998864 22222
Q ss_pred -HHHHHHHHHHhc--------CChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 015590 200 -CLNILLKGLCEN--------GNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVT 270 (404)
Q Consensus 200 -~~~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 270 (404)
++..+..++... |++++|.+.|+.+.+.. +.+...+..+..... ... ... ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~~--------~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HHH--------HH
Confidence 455666666655 78899999999998763 223333332221111 000 000 01
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 271 FNILISGLRKQGKVEEGMKLLERMKGKGC--YPNSASYQEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 271 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
...+...|.+.|++++|...+++..+... ......+..+..++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455668888999999999998887621 223467888888999999999999988887654
No 96
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=1.5e-05 Score=79.15 Aligned_cols=251 Identities=14% Similarity=0.017 Sum_probs=164.7
Q ss_pred ChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCCh--HHHHHHHHHHHhhcCCHHHH
Q 015590 70 DPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSD--GFFYNVIKIYGNMAGRISKA 147 (404)
Q Consensus 70 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 147 (404)
.|+.|-++-+.. +.. |-+...|-.-|......++.++|+++.+++...-.....+ .-.|..+..+-..-|.-+..
T Consensus 1440 ~pesaeDferlv-rss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLV-RSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred CCcCHHHHHHHH-hcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 344555544444 321 3345677777777788888888888888765332111111 12333333333335667778
Q ss_pred HHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC
Q 015590 148 IETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ 227 (404)
Q Consensus 148 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 227 (404)
.++|++..+.. -.-..|..|...|.+.+.+++|.++++.|.+.- .-...+|...+..+.+..+-+.|..++.+..+.
T Consensus 1517 ~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1517 KKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 88888877642 123467778888888888888888888887652 356678888888888888888888888876654
Q ss_pred CCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCCh--
Q 015590 228 NCEP--NVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNS-- 303 (404)
Q Consensus 228 ~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-- 303 (404)
= +. ......-.+..-.+.|+.+.+..+|+......++ -...|+..+++-.+.|+.+.++.+|++....++.|..
T Consensus 1594 l-Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1594 L-PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred c-chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 2 22 2334445555667788888888888888766444 4567888888888888888888888888888766653
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHH
Q 015590 304 ASYQEVLYGLLDKKRFPEAKELVGR 328 (404)
Q Consensus 304 ~~~~~li~~~~~~g~~~~a~~~~~~ 328 (404)
..|.-.+..--..|+-+.++.+=.+
T Consensus 1672 fffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1672 FFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHH
Confidence 5666777666666765544444333
No 97
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.64 E-value=1.3e-05 Score=65.68 Aligned_cols=119 Identities=10% Similarity=0.100 Sum_probs=65.9
Q ss_pred cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHcCCC--HHHH
Q 015590 211 NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISG-LRKQGK--VEEG 287 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~a 287 (404)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555544444 555566666666666666666666666666555332 44455555544 244444 3666
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 288 MKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 288 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
.+++++..+.+.. +...+..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666655322 4455555555666666666666666666554
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.00039 Score=63.63 Aligned_cols=311 Identities=15% Similarity=0.121 Sum_probs=178.1
Q ss_pred HhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccC---------------------
Q 015590 65 FSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLC--------------------- 123 (404)
Q Consensus 65 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------------------- 123 (404)
..+.+.+++|+..++-. . +.|..+...-...+.+.|++++|.++|+.+.+....
T Consensus 89 ~Yrlnk~Dealk~~~~~-~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~ 163 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGL-D----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL 163 (652)
T ss_pred HHHcccHHHHHHHHhcc-c----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH
Confidence 34567788888877733 1 223446666667778888888888888877433210
Q ss_pred -------CC-ChHHHHHHHHHHHhhcCCHHHHHHHHhhcc--------cCC-----CCccHH-HHHHHHHHHHhcCcHhH
Q 015590 124 -------RF-SDGFFYNVIKIYGNMAGRISKAIETLFDMP--------SYN-----CWPSVK-TFNLVLNLLVSAKLYGE 181 (404)
Q Consensus 124 -------~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--------~~~-----~~p~~~-~~~~ll~~~~~~~~~~~ 181 (404)
+. +-..++|.--.+.. .|++.+|+++++... +.+ +.-... .-..+.-.+...|+..+
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 00 11223444444444 899999999998771 111 111111 11223445667899999
Q ss_pred HHHHHHHHHHcCCCCCHhH----HHHHHHHHHhc---------------------------------------------C
Q 015590 182 IQGIYTSAAKLGVEIDACC----LNILLKGLCEN---------------------------------------------G 212 (404)
Q Consensus 182 a~~~~~~~~~~g~~~~~~~----~~~li~~~~~~---------------------------------------------g 212 (404)
|.++|...++.. ++|... -|.|+.+-... +
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999988775 444321 12222111000 1
Q ss_pred ChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 015590 213 NLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE--KGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKL 290 (404)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 290 (404)
..+.+.++-...... .| ...+..++..+.+ .....+|..++...-+....-.....-..+......|+++.|.++
T Consensus 322 k~~q~r~~~a~lp~~--~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 322 KMDQVRELSASLPGM--SP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hHHHHHHHHHhCCcc--Cc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 111111111111110 11 2233334433322 224566777776666553332344555667777889999999999
Q ss_pred HH--------HHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHH----HHHHHcCCChHH
Q 015590 291 LE--------RMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE--RMSPSFVSYKKL----IHGLCNQKLVED 356 (404)
Q Consensus 291 ~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l----i~~~~~~g~~~~ 356 (404)
+. .+.+.+..| .+...+...+.+.++-+.|..++.+.... .-.+......++ ...-.+.|+-++
T Consensus 399 l~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 99 555555555 45556677778888877777777766542 112222333333 333446799999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHhhccCCC
Q 015590 357 VDWVLKKMVQQGFVPRMGMWREIVGCVTFGKD 388 (404)
Q Consensus 357 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 388 (404)
|..+++++.+. ..+|..+...++.+|..-+.
T Consensus 477 a~s~leel~k~-n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 477 ASSLLEELVKF-NPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred HHHHHHHHHHh-CCchHHHHHHHHHHHHhcCH
Confidence 99999999964 44677788888888876543
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=4e-06 Score=77.93 Aligned_cols=223 Identities=17% Similarity=0.117 Sum_probs=157.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHH
Q 015590 87 YNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTF 166 (404)
Q Consensus 87 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 166 (404)
++|--..-..+...+...|-...|..+++++. .+...+..|+. .|+..+|..+..+..+. +||+..|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~-lg~~~kaeei~~q~lek--~~d~~ly 460 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLL-LGQHGKAEEINRQELEK--DPDPRLY 460 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHH-hcccchHHHHHHHHhcC--CCcchhH
Confidence 34444445566677778888888888888753 23456666666 78888888888877763 4788888
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc
Q 015590 167 NLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK 246 (404)
Q Consensus 167 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 246 (404)
..+.+......-+++|.++.++.... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-..--+..+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQL 532 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHH
Confidence 88888877777788888887765433 11122222233677888888887766554 55667777777777888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 015590 247 GNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELV 326 (404)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 326 (404)
++++.|.+.|.......+. +...||.+-.+|.+.|+..+|...+.+..+.+ .-+...|...+....+.|.++.|.+.+
T Consensus 533 ek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 8888888888777654222 45678888888888888888888888888776 335566777777778888888888888
Q ss_pred HHHHHC
Q 015590 327 GRMICE 332 (404)
Q Consensus 327 ~~~~~~ 332 (404)
.++.+.
T Consensus 611 ~rll~~ 616 (777)
T KOG1128|consen 611 HRLLDL 616 (777)
T ss_pred HHHHHh
Confidence 777643
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.62 E-value=0.00013 Score=74.91 Aligned_cols=306 Identities=9% Similarity=-0.002 Sum_probs=180.1
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcccCC----CC--hHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCcc----HHH
Q 015590 96 LIINKLAQAKRFDAIEDIMQRIKVEKLCR----FS--DGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPS----VKT 165 (404)
Q Consensus 96 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~ 165 (404)
.....+...|+++++..++......-... ++ ...........+...|++++|...+++....-...+ ...
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 33445567788888888887764321000 00 111222222333348899999998887654211111 124
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHcCC---CC--CHhHHHHHHHHHHhcCChHHHHHHHHHchh----CCCC--C-cH
Q 015590 166 FNLVLNLLVSAKLYGEIQGIYTSAAKLGV---EI--DACCLNILLKGLCENGNLEAAFYVLDEFPK----QNCE--P-NV 233 (404)
Q Consensus 166 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~--~-~~ 233 (404)
.+.+...+...|++++|...+++.....- .+ ...+...+...+...|+++.|...+++... .+.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 45566667788999999998888764311 11 123455667778889999999888877543 2211 1 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC-CCChhhH--
Q 015590 234 RTYSTLMHGLCEKGNVEEAFGLLERMESE--GIDA--DTVTFNILISGLRKQGKVEEGMKLLERMKGKGC-YPNSASY-- 306 (404)
Q Consensus 234 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-- 306 (404)
..+..+...+...|++++|...+.+.... ...+ ....+..+...+...|+.++|.+.+........ ......+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 33455566677789999999888876542 1112 233445566677788999999988888754210 0011111
Q ss_pred ---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCCCCH-Hh
Q 015590 307 ---QEVLYGLLDKKRFPEAKELVGRMICERMSPSF---VSYKKLIHGLCNQKLVEDVDWVLKKMVQQ----GFVPRM-GM 375 (404)
Q Consensus 307 ---~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~ 375 (404)
...+..+...|+.+.|.+.+............ ..+..+..++...|+.++|...+++.... |..++. .+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 11223445578888888887775532111111 11345667788999999999999987753 333322 23
Q ss_pred HHHHHHhhccCCCCcchhhHHHhhhh
Q 015590 376 WREIVGCVTFGKDNRNRVYVTETVDS 401 (404)
Q Consensus 376 ~~~ll~~~~~~~~~~~~~~~~~~~~~ 401 (404)
+..+-.++...|+.+.+...++..-.
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444566677877776655554433
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=6.2e-06 Score=76.74 Aligned_cols=231 Identities=12% Similarity=0.076 Sum_probs=175.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHh
Q 015590 60 EVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGN 139 (404)
Q Consensus 60 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (404)
.+-..+...|-...|+.+|++. +.|.-+|..|+..|+-.+|..+..+-.+. +++..+|.++..+..
T Consensus 403 ~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhcc
Confidence 4556788889999999999976 34777899999999999999998876542 466777777776666
Q ss_pred hcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 015590 140 MAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 140 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 219 (404)
.---+++|.++++.... ..-..+.....+.++++++.+.++.-.+.. +....+|-.+..++.++++++.|.+
T Consensus 469 d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 56668889888877543 222223333345789999999998887765 5667788888999999999999999
Q ss_pred HHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-C
Q 015590 220 VLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK-G 298 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~ 298 (404)
.|..-.... +-+..+||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+-...+.|.+++|.+.+.++.+. .
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 998877653 556778999999999999999999999999887633 5667777777788999999999999888654 1
Q ss_pred CCCChhhHHHHHHHHH
Q 015590 299 CYPNSASYQEVLYGLL 314 (404)
Q Consensus 299 ~~p~~~~~~~li~~~~ 314 (404)
...|..+...++....
T Consensus 619 ~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 619 KYKDDEVLLIIVRTVL 634 (777)
T ss_pred hcccchhhHHHHHHHH
Confidence 1225555555554443
No 102
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.59 E-value=0.00026 Score=66.75 Aligned_cols=203 Identities=10% Similarity=-0.036 Sum_probs=121.1
Q ss_pred CCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHH
Q 015590 54 DWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNV 133 (404)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 133 (404)
|...|..+--++.+.|+++.+.+.|++.+. +.--..+.|..+...+...|.-..|..+++...... ..|++.....+
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~-~~ps~~s~~Lm 398 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS-EQPSDISVLLM 398 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc-cCCCcchHHHH
Confidence 444555666677777888888888888753 334566778888888888888888888887754332 12334444443
Q ss_pred HHHHH-hhcCCHHHHHHHHhhccc--CCC--CccHHHHHHHHHHHHh-----------cCcHhHHHHHHHHHHHcCCCCC
Q 015590 134 IKIYG-NMAGRISKAIETLFDMPS--YNC--WPSVKTFNLVLNLLVS-----------AKLYGEIQGIYTSAAKLGVEID 197 (404)
Q Consensus 134 l~~~~-~~~g~~~~A~~~~~~m~~--~~~--~p~~~~~~~ll~~~~~-----------~~~~~~a~~~~~~~~~~g~~~~ 197 (404)
....| ..-+.++++++.-.+..+ .+. ......|-.+.-+|.. .....++.+.+++..+.+ +.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 33333 334555555555544433 110 0122334444333322 112346666777776654 333
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 198 ACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 198 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
..+.-.+---|+..++++.|.....+..+.+-.-+...|..+.-.+...+++.+|+.+.+...
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 333334445567777888888888777776546677778777777777777777777765543
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=3.3e-05 Score=75.85 Aligned_cols=241 Identities=7% Similarity=0.037 Sum_probs=149.9
Q ss_pred ccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHH
Q 015590 51 NHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFF 130 (404)
Q Consensus 51 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (404)
++.+.-.|..|+..+.+.+++++|+++.+..++..+-. ...|..+...+.+.++.+.+..+ .+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~--i~~yy~~G~l~~q~~~~~~~~lv--~~------------- 89 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS--ISALYISGILSLSRRPLNDSNLL--NL------------- 89 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc--eehHHHHHHHHHhhcchhhhhhh--hh-------------
Confidence 34455667788888888888888888888776543222 22333333355566665555444 21
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 015590 131 YNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCE 210 (404)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 210 (404)
+..+-. ..++..+..+...|.+.+ -+...+..+..+|-+.|+.+++.++|+++.+.. +-|..+.|.+...|+.
T Consensus 90 ---l~~~~~-~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 90 ---IDSFSQ-NLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred ---hhhccc-ccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 111211 333433333334444432 344577778888888888888888888888877 6678888888888888
Q ss_pred cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 015590 211 NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKL 290 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 290 (404)
. ++++|+.++...... |...+++.++..++.++.... |+ +.+.-.++
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i 209 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRI 209 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHH
Confidence 8 888888887776643 566677788888888777662 22 12222333
Q ss_pred HHHHhhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015590 291 LERMKGK-GCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLC 349 (404)
Q Consensus 291 ~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 349 (404)
.+.+... |..--..++-.+-..|...++++++..++..+.+.. +-|.....-++.+|.
T Consensus 210 ~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 210 ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 3333333 223334556666677777788888888888888763 335555566666665
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=9.5e-06 Score=73.58 Aligned_cols=218 Identities=14% Similarity=0.059 Sum_probs=108.1
Q ss_pred HHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHH-HHHHHHhhcC
Q 015590 64 IFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYN-VIKIYGNMAG 142 (404)
Q Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g 142 (404)
-+.+.|+..+|.-.|+...++. |.+...|..|...-+..++=..|+..++++.+.+ |++..... +...|.. .|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytN-eg 367 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTN-EG 367 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhh-hh
Confidence 3455666777777777766543 4456667777666666666666666666665544 34433333 3333333 56
Q ss_pred CHHHHHHHHhhcccCCCCccHHHHHHHH---------HHHHhcCcHhHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhcC
Q 015590 143 RISKAIETLFDMPSYNCWPSVKTFNLVL---------NLLVSAKLYGEIQGIYTSAAK-LGVEIDACCLNILLKGLCENG 212 (404)
Q Consensus 143 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll---------~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g 212 (404)
.-..|++.++.-.... |. ..|...- ..+..........++|-++.. .+..+|..+...|.-.|--.|
T Consensus 368 ~q~~Al~~L~~Wi~~~--p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNK--PK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hHHHHHHHHHHHHHhC--cc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 6666666666543211 00 0000000 111111222333334433332 232345555555555555555
Q ss_pred ChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHH
Q 015590 213 NLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADT-VTFNILISGLRKQGKVEEGMKLL 291 (404)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~ 291 (404)
++++|...|+...... |-|...||-|...++...+.++|+..|.+..+. +|+- .....|.-.|...|.+++|...|
T Consensus 445 efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 6666666655555443 445555665555555555556666665555554 2321 12223444455555555555554
Q ss_pred HH
Q 015590 292 ER 293 (404)
Q Consensus 292 ~~ 293 (404)
-.
T Consensus 522 L~ 523 (579)
T KOG1125|consen 522 LE 523 (579)
T ss_pred HH
Confidence 43
No 105
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=9e-05 Score=66.24 Aligned_cols=137 Identities=18% Similarity=0.152 Sum_probs=73.7
Q ss_pred HhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCc-HHHHHHHHHHHHHcCCHHHH
Q 015590 174 VSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPN-VRTYSTLMHGLCEKGNVEEA 252 (404)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A 252 (404)
...|++++|+..++.+.+.- |-|..........+.+.++.++|.+.++.+... .|+ ...+-.+..+|.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 34555666666666655542 344444455555566666666666666665554 233 34444555556666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 253 FGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 253 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
+.+++........ |+..|..|.++|...|+..++..-.. ..+...|+++.|...+....+.
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 6666655544332 55566666666666665555443332 2334455555555555555443
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=1.1e-05 Score=66.20 Aligned_cols=155 Identities=18% Similarity=0.093 Sum_probs=79.7
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCH
Q 015590 170 LNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNV 249 (404)
Q Consensus 170 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 249 (404)
-..+...|+-+....+....... .+.|....+..+....+.|++..|...|.+..... ++|...|+.+.-+|.+.|++
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence 33344444444444444332221 13344444445555555566666666555555443 55555666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 015590 250 EEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGR 328 (404)
Q Consensus 250 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (404)
++|..-|.+..+.-.. +...+|.+.-.+.-.|+.+.|..++......+. -|...-..+.......|++++|.++...
T Consensus 151 ~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 151 DEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6666655555544222 344455555555555666666666655555431 1444455555555555666666555443
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=4.1e-05 Score=62.91 Aligned_cols=159 Identities=18% Similarity=0.093 Sum_probs=106.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHH-HHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHH
Q 015590 95 TLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFY-NVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLL 173 (404)
Q Consensus 95 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 173 (404)
..+-..+.-.|+-+....+....... .+.+.... ........ .|++..|...|.+..... ++|...|+.+.-+|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~---~~~d~~ll~~~gk~~~~-~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaal 144 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA---YPKDRELLAAQGKNQIR-NGNFGEAVSVLRKAARLA-PTDWEAWNLLGAAL 144 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc---CcccHHHHHHHHHHHHH-hcchHHHHHHHHHHhccC-CCChhhhhHHHHHH
Confidence 55566666677777766666654322 23333333 23333443 788888888888877644 46677888888888
Q ss_pred HhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 015590 174 VSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAF 253 (404)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 253 (404)
.+.|++++|..-|.+..+.- +-+....+.+.-.|.-.|+.+.|..++......+ ..|...-..+.......|++++|.
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 145 DQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHH
Confidence 88888888888888777764 4456667777777777788888888887776664 346666666777777788888887
Q ss_pred HHHHHHH
Q 015590 254 GLLERME 260 (404)
Q Consensus 254 ~~~~~m~ 260 (404)
++-..-.
T Consensus 223 ~i~~~e~ 229 (257)
T COG5010 223 DIAVQEL 229 (257)
T ss_pred hhccccc
Confidence 7765543
No 108
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=0.00032 Score=60.18 Aligned_cols=254 Identities=11% Similarity=0.015 Sum_probs=116.1
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHH-HHHHHHhhcCCHHHHHHHHhhcccCCCCcc-HHHHHHHHHHH
Q 015590 96 LIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYN-VIKIYGNMAGRISKAIETLFDMPSYNCWPS-VKTFNLVLNLL 173 (404)
Q Consensus 96 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~ 173 (404)
+|....--.-.+++|++++.++.... +.-...+. +...|++ ..-++-+.++++-....- || +..-|......
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn---~ey~alNVy~ALCyyK-lDYydvsqevl~vYL~q~--pdStiA~NLkacn~ 229 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDN---PEYIALNVYMALCYYK-LDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNL 229 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC---hhhhhhHHHHHHHHHh-cchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 33333334446788888888876543 22222332 3444454 778888888887766542 44 34555554444
Q ss_pred HhcCcHhHHHHHH--------------HHHHHcCC------------CCC-----HhHHHHHHHHHHhcCChHHHHHHHH
Q 015590 174 VSAKLYGEIQGIY--------------TSAAKLGV------------EID-----ACCLNILLKGLCENGNLEAAFYVLD 222 (404)
Q Consensus 174 ~~~~~~~~a~~~~--------------~~~~~~g~------------~~~-----~~~~~~li~~~~~~g~~~~a~~~~~ 222 (404)
.+.=.-..|++-. +.+.++++ -|. +..--.|+-.|.+.+++.+|..+.+
T Consensus 230 fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 230 FRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred hhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh
Confidence 3321111122211 12222210 010 1122345556888899999998888
Q ss_pred HchhCCCCCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHH
Q 015590 223 EFPKQNCEPNVRTYSTLMHGLCEKG-------NVEEAFGLLERMESEGIDADTVT-FNILISGLRKQGKVEEGMKLLERM 294 (404)
Q Consensus 223 ~~~~~~~~~~~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m 294 (404)
++. |.+..-|-.-.-.....| ...-|.+.|.-.-+++..-|+.. -.++.+.+.-..++++++..+..+
T Consensus 310 dl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 310 DLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred hcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 333333322111222222 24455666655544443322211 122223333334445555544444
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHcCCChHHHHHHH
Q 015590 295 KGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKL-IHGLCNQKLVEDVDWVL 361 (404)
Q Consensus 295 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~ 361 (404)
..-=..-|.. --.+..+.+..|.+.+|+++|-.+....++ |..+|.++ .++|.++|..+-|++++
T Consensus 386 ~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 386 ESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 4331111111 123444555555555555555544332222 22333322 34555555555554443
No 109
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=8.1e-05 Score=61.29 Aligned_cols=249 Identities=13% Similarity=0.091 Sum_probs=143.4
Q ss_pred HHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCc
Q 015590 99 NKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKL 178 (404)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 178 (404)
+-+--.|++..+...-....... .....-..+-.+|.. -|.+.... .+.+... .|.......+.......++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~---~~~e~d~y~~raylA-lg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK---TDVELDVYMYRAYLA-LGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc---chhHHHHHHHHHHHH-cccccccc---ccccccc-CChHHHHHHHHHHhhCcch
Confidence 34445566666665555443221 112222223334443 44443322 2222211 2333333333333333343
Q ss_pred Hh-HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015590 179 YG-EIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLE 257 (404)
Q Consensus 179 ~~-~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 257 (404)
.+ ...++.+.+.......+......-...|++.|++++|++..+... +......=...+.+..+.+-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333445555554444454445555667888888888888877632 22333333445567778888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 015590 258 RMESEGIDADTVTFNILISGLRK----QGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICER 333 (404)
Q Consensus 258 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 333 (404)
+|.+- -+..|.+.|..++.+ .+...+|.-+|++|.++ ..|+..+.+....++...|++++|..++++...+.
T Consensus 162 ~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 88765 256677766666654 45678888888888874 36788888888888888888888888888888764
Q ss_pred CCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHH
Q 015590 334 MSPSFVSYKKLIHGLCNQKLV-EDVDWVLKKMVQ 366 (404)
Q Consensus 334 ~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 366 (404)
..++.+...++.+-...|.. +-..+.+.++..
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 34555555555555555543 444556666653
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.56 E-value=0.00037 Score=59.63 Aligned_cols=293 Identities=12% Similarity=0.040 Sum_probs=191.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHH-HHHHH
Q 015590 60 EVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNV-IKIYG 138 (404)
Q Consensus 60 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ 138 (404)
.+-..+...|++..|+..|..+.+- -+.+-.++..-...|...|+-..|..=+.+..+.. ++.....+ -....
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK----pDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK----PDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC----ccHHHHHHHhchhh
Confidence 4555667778888888888888542 12233345555667788888888888787776544 22211111 11222
Q ss_pred hhcCCHHHHHHHHhhcccCCCCccH--------------HHH--HHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHH
Q 015590 139 NMAGRISKAIETLFDMPSYNCWPSV--------------KTF--NLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLN 202 (404)
Q Consensus 139 ~~~g~~~~A~~~~~~m~~~~~~p~~--------------~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 202 (404)
.+.|.++.|..=|+...+.. |+. ..| ...+..+...|+...|+.....+.+.. +-|...+.
T Consensus 117 lK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 23788888888888877654 321 111 223445566788888888888888764 56788888
Q ss_pred HHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----H-------
Q 015590 203 ILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVT----F------- 271 (404)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----~------- 271 (404)
.-..+|...|++..|..=+....+.. ..+..++--+-..+...|+.+.++...++..+. .||-.. |
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 88888888899888887777666544 445566666777788888888888888887765 344321 1
Q ss_pred HHH--HHHHHcCCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 015590 272 NIL--ISGLRKQGKVEEGMKLLERMKGKGCYPN---SASYQEVLYGLLDKKRFPEAKELVGRMICERMSPS-FVSYKKLI 345 (404)
Q Consensus 272 ~~l--i~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li 345 (404)
-.| +......+++-++..-.+...+...... ...+..+-.++...+++.+|++.-.+..+. .|| ..++.--.
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRA 348 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHH
Confidence 111 1223445677777777777776632211 233445566677778888888888888763 454 66666667
Q ss_pred HHHHcCCChHHHHHHHHHHHH
Q 015590 346 HGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~m~~ 366 (404)
.+|.-...++.|+.=|+...+
T Consensus 349 eA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHh
Confidence 777777778888877777663
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=6.5e-06 Score=67.36 Aligned_cols=119 Identities=8% Similarity=0.088 Sum_probs=83.3
Q ss_pred cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHH-HHHcCC--HHHH
Q 015590 176 AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG-LCEKGN--VEEA 252 (404)
Q Consensus 176 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~--~~~A 252 (404)
.++.+++...++...+.. +.|...|..+...|...|++++|...|+...+.. +.+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666654 5677777777777777777777777777777665 4566667666665 356565 4777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 253 FGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 253 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
..++++..+.+.. +...+..+...+...|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777776544 5666777777777777777777777777766
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=0.00052 Score=61.57 Aligned_cols=215 Identities=16% Similarity=0.073 Sum_probs=140.8
Q ss_pred CHHHHHHHHhhcccCC--CCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 143 RISKAIETLFDMPSYN--CWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 143 ~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
++.++...-+.++..+ -.|+...+...+.+......-..+-.++....+ +-......-....+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHH
Confidence 3455555555554422 124444555555544443333333333332222 11122233334445667889999999
Q ss_pred HHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC
Q 015590 221 LDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDAD-TVTFNILISGLRKQGKVEEGMKLLERMKGKGC 299 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 299 (404)
++.+.+.- +.|...+......+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+|..++++.....
T Consensus 329 l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~- 404 (484)
T COG4783 329 LQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND- 404 (484)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-
Confidence 99887763 556666677778889999999999999998877 454 5566677888999999999999998888774
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC--CCCCCHHhHH
Q 015590 300 YPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ--GFVPRMGMWR 377 (404)
Q Consensus 300 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~ 377 (404)
+-|+..|..|..+|...|+..++.....+ .|...|++++|...+....+. .-.|+-.-+.
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~d 466 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARAD 466 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34778899999999999988877765544 355678888888888887765 2344444445
Q ss_pred HHHHh
Q 015590 378 EIVGC 382 (404)
Q Consensus 378 ~ll~~ 382 (404)
..|..
T Consensus 467 ari~~ 471 (484)
T COG4783 467 ARIDQ 471 (484)
T ss_pred HHHHH
Confidence 55543
No 113
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.52 E-value=0.0008 Score=63.55 Aligned_cols=120 Identities=15% Similarity=0.030 Sum_probs=51.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc
Q 015590 272 NILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPS-FVSYKKLIHGLCN 350 (404)
Q Consensus 272 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 350 (404)
......+.+.++.++|.-.+.+..... ......|......+...|.+++|.+.|...... .|+ +....++..++..
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHH
Confidence 344444455555555554444444331 112233333334444445555555555544432 232 2344444455555
Q ss_pred CCChHHHHH--HHHHHHHCCCCCC-HHhHHHHHHhhccCCCCcchhhHH
Q 015590 351 QKLVEDVDW--VLKKMVQQGFVPR-MGMWREIVGCVTFGKDNRNRVYVT 396 (404)
Q Consensus 351 ~g~~~~a~~--~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~ 396 (404)
.|+..-|.. ++.++.+ +.|+ ...|..+=..+...|+.+.+...+
T Consensus 731 ~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 554444444 4444442 2222 233433333444444444444433
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=9.3e-05 Score=72.78 Aligned_cols=240 Identities=10% Similarity=0.046 Sum_probs=168.0
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHH
Q 015590 88 NPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFN 167 (404)
Q Consensus 88 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 167 (404)
+.+...+..|+..+...+++++|.++.+...... |....++......+.+.++.+++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~---P~~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH---KKSISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 3456789999999999999999999999765443 44433333333344335654433322
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcC
Q 015590 168 LVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKG 247 (404)
Q Consensus 168 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 247 (404)
.++.......++..+..++..+... .-+...+-.+..+|-+.|+.++|..+++++.+.. +-|..+.|-+...|...
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 4555555566666666666666664 3456688899999999999999999999999988 77889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 015590 248 NVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVG 327 (404)
Q Consensus 248 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 327 (404)
+.++|..++.+.... +....++..+.++|.++...... +...+-.++......-
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~---------- 217 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR---------- 217 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh----------
Confidence 999999999887654 56667899999999999987321 2223333333222221
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHhhc
Q 015590 328 RMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVP-RMGMWREIVGCVT 384 (404)
Q Consensus 328 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 384 (404)
|..--..++-.+-..|...++++++..+++.+.+ +.| |.....-++.+|.
T Consensus 218 -----~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 -----EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK 268 (906)
T ss_pred -----ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH
Confidence 1222334566667788888999999999999995 444 3345666666665
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=2.7e-05 Score=70.74 Aligned_cols=242 Identities=12% Similarity=0.062 Sum_probs=161.0
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
.|++.+|.-.|+..++.+ +-+...|-.|.......++-..|+..+++..+.. +-+..+.-.|.-.|...|.-..|.+.
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 788888888888877765 2245688888888888888888888888888775 55677777788888888888888887
Q ss_pred HHHchhCCC------C--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 015590 221 LDEFPKQNC------E--PNVRTYSTLMHGLCEKGNVEEAFGLLERME-SEGIDADTVTFNILISGLRKQGKVEEGMKLL 291 (404)
Q Consensus 221 ~~~~~~~~~------~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 291 (404)
++.-..... . ++...-+. ..+.....+.+..++|-++. +.+..+|......|.-.|--.|++++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 776543210 0 00000000 12222334455566666554 4444466677777777777788888888888
Q ss_pred HHHhhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHC--
Q 015590 292 ERMKGKGCYP-NSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSF-VSYKKLIHGLCNQKLVEDVDWVLKKMVQQ-- 367 (404)
Q Consensus 292 ~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 367 (404)
+..... +| |...||-|-..++...+.++|+..|++.++ ++|+. ....-|.-.|...|.+++|.+.|=..+..
T Consensus 454 ~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 454 EAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 888776 34 556788888888888888888888888876 46654 34445677788888888888877655431
Q ss_pred -------CCCCCHHhHHHHHHhhccCCCCc
Q 015590 368 -------GFVPRMGMWREIVGCVTFGKDNR 390 (404)
Q Consensus 368 -------~~~p~~~~~~~ll~~~~~~~~~~ 390 (404)
+-.++...|..|-.++...+..+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 11223456666655555555555
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00046 Score=56.96 Aligned_cols=251 Identities=11% Similarity=0.090 Sum_probs=160.4
Q ss_pred HHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhc
Q 015590 62 LKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMA 141 (404)
Q Consensus 62 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (404)
++-+.-.|++..++..-+.... .+-+...-.-+-++|...|.+.... ..++.. ..++.....++..+...-
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~---~~~~~e~d~y~~raylAlg~~~~~~---~eI~~~---~~~~lqAvr~~a~~~~~e 85 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSS---SKTDVELDVYMYRAYLALGQYQIVI---SEIKEG---KATPLQAVRLLAEYLELE 85 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcc---ccchhHHHHHHHHHHHHcccccccc---cccccc---cCChHHHHHHHHHHhhCc
Confidence 5566677888888877666532 2345555556667777777765432 222211 122333333444444333
Q ss_pred CCHHHH-HHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 142 GRISKA-IETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 142 g~~~~A-~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
++-++- -.+.+.+.......+......-...|.+.+++++|++...... +......=+..+.+..+++-|.+.
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 3344444443333333333444566889999999998876521 233333445556777889999999
Q ss_pred HHHchhCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 015590 221 LDEFPKQNCEPNVRTYSTLMHGLCE----KGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
++.|.+- .+..|.+.|..++.+ .+...+|.-+|++|.++ ..|+..+.+-...++...|++++|..++++...
T Consensus 160 lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 160 LKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999864 355666666666654 45688999999999874 467888888888899999999999999999988
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHC
Q 015590 297 KGCYPNSASYQEVLYGLLDKKRFPE-AKELVGRMICE 332 (404)
Q Consensus 297 ~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 332 (404)
+... ++.+...++-.-...|...+ ..+.+..++..
T Consensus 236 kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 236 KDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred ccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 8533 56777777766666666544 44556666543
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=1.6e-05 Score=61.45 Aligned_cols=92 Identities=7% Similarity=-0.208 Sum_probs=48.0
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC
Q 015590 169 VLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN 248 (404)
Q Consensus 169 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 248 (404)
....+...|++++|...|+...... +.+...+..+..++...|++++|...|+...+.+ +.+...+..+..++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 4444455555555555555555443 3344555555555555555555555555555443 3444555555555555555
Q ss_pred HHHHHHHHHHHHHC
Q 015590 249 VEEAFGLLERMESE 262 (404)
Q Consensus 249 ~~~A~~~~~~m~~~ 262 (404)
.++|...|+...+.
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555443
No 118
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.43 E-value=0.00084 Score=57.52 Aligned_cols=296 Identities=10% Similarity=0.058 Sum_probs=202.9
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCCh-HHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHH-
Q 015590 89 PNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSD-GFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTF- 166 (404)
Q Consensus 89 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~- 166 (404)
.+..-..-+.+.+...|++..|+.-|....+.+ |++ ..++.-...|.. .|+-.-|+.=|.+..+. +||-..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d---p~~Y~aifrRaT~yLA-mGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD---PNNYQAIFRRATVYLA-MGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC---chhHHHHHHHHHHHhh-hcCCccchhhHHHHHhc--CccHHHHH
Confidence 345555667788888999999999998887543 332 344444555666 78888888888887773 4774322
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC--Hh------------HHHHHHHHHHhcCChHHHHHHHHHchhCCCCCc
Q 015590 167 NLVLNLLVSAKLYGEIQGIYTSAAKLGVEID--AC------------CLNILLKGLCENGNLEAAFYVLDEFPKQNCEPN 232 (404)
Q Consensus 167 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~------------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 232 (404)
..-...+.+.|.++.|..=|+.+.+.....+ .. .....+..+...|+...|......+.+.. +-|
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wd 188 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWD 188 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cch
Confidence 2234567899999999999999998742111 11 12234556777899999999999988765 678
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhh----HHH
Q 015590 233 VRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSAS----YQE 308 (404)
Q Consensus 233 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----~~~ 308 (404)
...|..-..+|...|++..|+.=++...+.... ++.++--+-..+...|+.+.++...++-.+. .||... |..
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKK 265 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHH
Confidence 888999999999999999998887776655333 4555555666777889999999988888876 455322 211
Q ss_pred H---------HHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHh
Q 015590 309 V---------LYGLLDKKRFPEAKELVGRMICERMSPSF---VSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPR-MGM 375 (404)
Q Consensus 309 l---------i~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~ 375 (404)
| +......++|.++++..+...+....... ..+..+-.++...|++.+|++...+.+ .+.|| ..+
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL--~~d~~dv~~ 343 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL--DIDPDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH--hcCchHHHH
Confidence 1 22234567888888888888775322122 334455667778899999999999998 67777 445
Q ss_pred HHHHHHhhccCCCCcchhhHH
Q 015590 376 WREIVGCVTFGKDNRNRVYVT 396 (404)
Q Consensus 376 ~~~ll~~~~~~~~~~~~~~~~ 396 (404)
+---..+|....+.+.+..=+
T Consensus 344 l~dRAeA~l~dE~YD~AI~dy 364 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDY 364 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 555555665555544444333
No 119
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=0.0013 Score=59.69 Aligned_cols=333 Identities=13% Similarity=0.048 Sum_probs=204.8
Q ss_pred CCCCCCCCccchh---hcccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCC-HHHHHHHHHHHHhcCCchHHH
Q 015590 36 PSASHQDSDHHAY---KLNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPN-EALYTLIINKLAQAKRFDAIE 111 (404)
Q Consensus 36 ~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~ 111 (404)
.++....+...|. .++++|.+.|..-..+|+..|++++|+.--.+.. .+.|+ +..|+....++...|++++|.
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 3445555555554 3677899999999999999999999988666553 35676 568999999999999999999
Q ss_pred HHHHHHHhcccCCCChHHHHHHH-HHHHhh----------------cCC-------------------------------
Q 015590 112 DIMQRIKVEKLCRFSDGFFYNVI-KIYGNM----------------AGR------------------------------- 143 (404)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~----------------~g~------------------------------- 143 (404)
.-|..-.+.. |++.....-+ .+.... .++
T Consensus 91 ~ay~~GL~~d---~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 91 LAYSEGLEKD---PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHhhcC---CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 9999977654 5555544433 322110 000
Q ss_pred ---HHHHHHHHhhc-----ccC-------CCCc---------cH-------------HHHHHHHHHHHhcCcHhHHHHHH
Q 015590 144 ---ISKAIETLFDM-----PSY-------NCWP---------SV-------------KTFNLVLNLLVSAKLYGEIQGIY 186 (404)
Q Consensus 144 ---~~~A~~~~~~m-----~~~-------~~~p---------~~-------------~~~~~ll~~~~~~~~~~~a~~~~ 186 (404)
...|.-.+... ... +..| .. .-...+.+...+..++..+++-|
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 01111111000 000 0001 00 01223444555556666666666
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHH-------HHHHHHHcCCHHHHHHHHHHH
Q 015590 187 TSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYST-------LMHGLCEKGNVEEAFGLLERM 259 (404)
Q Consensus 187 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~A~~~~~~m 259 (404)
....... -+..-++....+|...|.+..+...-+...+.| .-...-|+. +..+|.+.++++.|+..|.+.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 6666553 444555666667777777776666655555544 112222332 333566677888888888876
Q ss_pred HHCCCCCCHHHH-------------------------HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 015590 260 ESEGIDADTVTF-------------------------NILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLL 314 (404)
Q Consensus 260 ~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 314 (404)
......||..+= -.-...+.+.|++..|...|.++.... +-|...|..-..+|.
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYL 403 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHH
Confidence 655444443221 112345667789999999999988885 336678888888899
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 015590 315 DKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVG 381 (404)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 381 (404)
+.|.+..|++=.+...+.. ++....|..=..++....++++|.+.|++..+ ..|+..-+..-+.
T Consensus 404 kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYR 467 (539)
T ss_pred HHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 9999998888877777652 23334555555566667778888888888774 3365544333333
No 120
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.00015 Score=60.73 Aligned_cols=263 Identities=13% Similarity=0.086 Sum_probs=154.6
Q ss_pred CCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHH-HHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHH
Q 015590 54 DWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTL-IINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYN 132 (404)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 132 (404)
+.-..+.+-..|.+..++..|-..|+++... -|...-|.. -...+-+.+.+..|.++...|.... ...+....-
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~--~L~~~~lqL 117 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNP--ALHSRVLQL 117 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCH--HHHHHHHHH
Confidence 4445566667788888888899999888543 444444432 2345667888888888888774321 001111111
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC
Q 015590 133 VIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENG 212 (404)
Q Consensus 133 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 212 (404)
--...+. .+++..+..+.++....| +..+.+.......+.|+++.|.+-|+...+-|--.....|+.-+.. .+.|
T Consensus 118 qaAIkYs-e~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~ 192 (459)
T KOG4340|consen 118 QAAIKYS-EGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSR 192 (459)
T ss_pred HHHHhcc-cccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-Hhhh
Confidence 1111222 677777777777776543 4455555666667788888888888877765433334456554443 4467
Q ss_pred ChHHHHHHHHHchhCCCC-------------Cc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C
Q 015590 213 NLEAAFYVLDEFPKQNCE-------------PN---------------VRTYSTLMHGLCEKGNVEEAFGLLERMESE-G 263 (404)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~-------------~~---------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~ 263 (404)
+.+.|++...++.++|++ || +..+|.-...+.+.|+++.|.+-+-.|.-+ .
T Consensus 193 qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE 272 (459)
T KOG4340|consen 193 QYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE 272 (459)
T ss_pred hHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc
Confidence 778888888777776542 11 112333334456677777777777776422 2
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 015590 264 IDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGR 328 (404)
Q Consensus 264 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (404)
-..|++|...+.-.= ..+++-+..+-+.-+...+. ....||..++-.||++.-++.|-.++.+
T Consensus 273 ~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 273 EELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 234666665443221 13344444444444444432 3456777777778887777777776654
No 121
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.40 E-value=4.6e-05 Score=71.20 Aligned_cols=187 Identities=18% Similarity=0.173 Sum_probs=131.7
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
..+|.+|+.+++.+.+.. .-.--|..+...|+..|+++.|+++|.+. ..++--|.+|.+.|+|++|.++
T Consensus 745 akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHH
Confidence 788999999999988754 33446788889999999999999999643 2466789999999999999998
Q ss_pred HHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC
Q 015590 221 LDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCY 300 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 300 (404)
-.+... .......|-+-..-+-+.|++.+|.++|-.+.+ |+ ..|.+|-+.|..+..+++..+-...-
T Consensus 814 a~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d~-- 880 (1636)
T KOG3616|consen 814 AEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGDH-- 880 (1636)
T ss_pred HHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChhh--
Confidence 776543 244566777777778889999999888865542 34 25677888888888887776544321
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 015590 301 PNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVL 361 (404)
Q Consensus 301 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 361 (404)
-..|...+..-+-..|++..|.+-|-+.-+ |.+-++.|...+.|++|.++.
T Consensus 881 -l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 881 -LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred -hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 224555566666777777777776655432 344445555555555555444
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=1.6e-05 Score=61.55 Aligned_cols=93 Identities=8% Similarity=-0.098 Sum_probs=48.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 015590 203 ILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQG 282 (404)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 282 (404)
.+...+...|++++|...|+...... +.+...|..+...+.+.|++++|...|++....... +...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 34444555555555555555555443 344555555555555555555555555555544322 4444555555555555
Q ss_pred CHHHHHHHHHHHhhC
Q 015590 283 KVEEGMKLLERMKGK 297 (404)
Q Consensus 283 ~~~~a~~~~~~m~~~ 297 (404)
+.++|...|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555444
No 123
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=7.4e-05 Score=70.73 Aligned_cols=251 Identities=11% Similarity=0.024 Sum_probs=124.0
Q ss_pred hccCCCCCCCCCccchhhcccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCC--------CCCHHHHHHHHHHHHh
Q 015590 32 ALASPSASHQDSDHHAYKLNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDY--------NPNEALYTLIINKLAQ 103 (404)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~p~~~~~~~li~~~~~ 103 (404)
++|...|+...+.+...-+. +-..|..+-+.|.+.++.+-|.-.+..|...+|. .|+ ++-..+......
T Consensus 736 SfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 34444555444433322222 2244555555555555555555554444332221 111 222222222345
Q ss_pred cCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHH
Q 015590 104 AKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQ 183 (404)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 183 (404)
.|-+++|+.+|++.+. +.++..++...|.+++|.++-+.-....+ ..||..-..-+-..++.+.|+
T Consensus 813 LgMlEeA~~lYr~ckR-----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR-----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HhhHHHHHHHHHHHHH-----------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 5555666666555432 12444444445666666555543322211 124444444444455555555
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 015590 184 GIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEG 263 (404)
Q Consensus 184 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 263 (404)
+.|+.... +-..++..|. .++...+.+.+.+ .|...|......+-..|+.+.|+.+|....
T Consensus 879 eyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--- 939 (1416)
T KOG3617|consen 879 EYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAK--- 939 (1416)
T ss_pred HHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhh---
Confidence 55543211 1111111111 1122222222222 244556666666666778888887776654
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015590 264 IDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMI 330 (404)
Q Consensus 264 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (404)
-|-++++..|-.|+.++|-++-++-. |....-.|.+.|-..|++.+|..+|-+..
T Consensus 940 ------D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 ------DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ------hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 24566677777777777777665433 55556667777777777777777776554
No 124
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.39 E-value=5.7e-07 Score=50.70 Aligned_cols=33 Identities=52% Similarity=0.935 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 015590 235 TYSTLMHGLCEKGNVEEAFGLLERMESEGIDAD 267 (404)
Q Consensus 235 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 267 (404)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=6.4e-05 Score=72.96 Aligned_cols=210 Identities=11% Similarity=0.024 Sum_probs=119.1
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccH-HHHHHHHHHHH
Q 015590 96 LIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSV-KTFNLVLNLLV 174 (404)
Q Consensus 96 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~ 174 (404)
.+=...-+.+.+..+..-+-++..--...+.+.....++.......|.+++|+.+++...+.. |+. .....+...+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~ 131 (694)
T PRK15179 54 QARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVK 131 (694)
T ss_pred HHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHH
Confidence 333344444555544444444332211223334444444444444777777777777776643 554 35566667777
Q ss_pred hcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 015590 175 SAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFG 254 (404)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 254 (404)
+.+++++|...+++..... +-+......+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|..
T Consensus 132 ~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777777664 4455566666677777777777777777777643 3446677777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CCCCChhhHHHHHHHHHhc
Q 015590 255 LLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK----GCYPNSASYQEVLYGLLDK 316 (404)
Q Consensus 255 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~ 316 (404)
.|++..+.- .|....|+..+ ++...-..+++++.-. |......+...+|..|.+.
T Consensus 210 ~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 210 VLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 777765431 22334444433 2333444555555433 2222334455555555544
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=8.3e-05 Score=72.19 Aligned_cols=161 Identities=14% Similarity=0.023 Sum_probs=121.0
Q ss_pred CChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHH
Q 015590 69 RDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAI 148 (404)
Q Consensus 69 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 148 (404)
..+.+++.-...+.+ .++.+...+-.|.....+.|++++|..+++.+.+.. |+.............+.+++++|+
T Consensus 66 ~~~~~~~~~~~~~~~--~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~ 140 (694)
T PRK15179 66 HKPAAALPELLDYVR--RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGR 140 (694)
T ss_pred cchHhhHHHHHHHHH--hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHH
Confidence 344444444444433 256778899999999999999999999999987664 444444444444444489999999
Q ss_pred HHHhhcccCCCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC
Q 015590 149 ETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ 227 (404)
Q Consensus 149 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 227 (404)
..+++....+ |+ ......+..++.+.|++++|..+|+++...+ +-+..++..+...+-+.|+.++|...|+...+.
T Consensus 141 ~~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 141 AEIELYFSGG--SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998865 55 4567777888899999999999999999843 556888999999999999999999999988765
Q ss_pred CCCCcHHHHHH
Q 015590 228 NCEPNVRTYST 238 (404)
Q Consensus 228 ~~~~~~~~~~~ 238 (404)
. .+....|+.
T Consensus 218 ~-~~~~~~~~~ 227 (694)
T PRK15179 218 I-GDGARKLTR 227 (694)
T ss_pred h-CcchHHHHH
Confidence 3 344445443
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.38 E-value=2.6e-05 Score=59.74 Aligned_cols=24 Identities=17% Similarity=-0.032 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 015590 235 TYSTLMHGLCEKGNVEEAFGLLER 258 (404)
Q Consensus 235 ~~~~li~~~~~~~~~~~A~~~~~~ 258 (404)
.|..+...+...|++++|...|++
T Consensus 53 ~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 53 YWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 128
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.0011 Score=64.64 Aligned_cols=125 Identities=11% Similarity=0.180 Sum_probs=63.6
Q ss_pred ccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhC-CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHH
Q 015590 51 NHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKR-KDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGF 129 (404)
Q Consensus 51 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 129 (404)
.+.|...|+.++.- .+ .--..+.++..+. .+-..|++..+..++++-..+-..+..++++++.-....-..+..
T Consensus 948 ~R~D~~LW~~VL~e---~n--~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~n 1022 (1666)
T KOG0985|consen 948 ERSDPDLWAKVLNE---EN--PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRN 1022 (1666)
T ss_pred hccChHHHHHHHhc---cC--hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchh
Confidence 35677777776631 11 1112233333221 112446666667777788888888888888877644422222334
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHH
Q 015590 130 FYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTS 188 (404)
Q Consensus 130 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 188 (404)
..+++..-+. .-+..++.+..+++...+. |+. ...+...+-+++|..+|+.
T Consensus 1023 LQnLLiLtAi-kad~trVm~YI~rLdnyDa-~~i------a~iai~~~LyEEAF~ifkk 1073 (1666)
T KOG0985|consen 1023 LQNLLILTAI-KADRTRVMEYINRLDNYDA-PDI------AEIAIENQLYEEAFAIFKK 1073 (1666)
T ss_pred hhhhHHHHHh-hcChHHHHHHHHHhccCCc-hhH------HHHHhhhhHHHHHHHHHHH
Confidence 4455444444 4555566666666555331 221 2223344445555555543
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00044 Score=56.68 Aligned_cols=188 Identities=15% Similarity=0.068 Sum_probs=110.5
Q ss_pred CChhHHHHHHHHHhhCC--C-CCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCH
Q 015590 69 RDPISVISVLNQYSKRK--D-YNPNEA-LYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRI 144 (404)
Q Consensus 69 ~~~~~a~~~~~~~~~~~--~-~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 144 (404)
.++++.++++..+.... | ..++.. .|..++-+....|+.+.|..+++.+...- |.+.-+-.+-.......|++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhch
Confidence 46777777777765432 2 334443 35555556667777777777777765443 22222333333333346777
Q ss_pred HHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHc
Q 015590 145 SKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEF 224 (404)
Q Consensus 145 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 224 (404)
++|.++++.+.+.+ +.|.+++---+...-..|..-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77777777777765 344555555555555556555666666555544 4667777777777777777777777777776
Q ss_pred hhCCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHC
Q 015590 225 PKQNCEPNVRTYSTLMHGLCEKG---NVEEAFGLLERMESE 262 (404)
Q Consensus 225 ~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~ 262 (404)
.-.. |.+...+..+...+.-.| +.+-|...|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6553 444444445554443333 345566666666554
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.34 E-value=2.7e-05 Score=59.66 Aligned_cols=97 Identities=14% Similarity=0.029 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
.....+...+...|++++|.+.++.+...+ +.+...+..+...+.+.|++++|..+++...+.+ +.+...+..+...|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 344555566666777777777777766654 4466666667777777777777777777666554 44556666666677
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 015590 244 CEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~ 262 (404)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777766655
No 131
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.31 E-value=1.2e-06 Score=48.90 Aligned_cols=32 Identities=25% Similarity=0.621 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 015590 235 TYSTLMHGLCEKGNVEEAFGLLERMESEGIDA 266 (404)
Q Consensus 235 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 266 (404)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.7e-06 Score=48.62 Aligned_cols=33 Identities=36% Similarity=0.707 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 015590 340 SYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPR 372 (404)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 372 (404)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666777777777777777777766666665
No 133
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0011 Score=64.53 Aligned_cols=289 Identities=14% Similarity=0.122 Sum_probs=157.4
Q ss_pred HHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcC
Q 015590 63 KIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAG 142 (404)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 142 (404)
.....++-+++|..+|... ..+......||. .-+++++|.+.-+++. ....|+-+...-.+.|
T Consensus 1056 ~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie---~i~~ldRA~efAe~~n--------~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKF------DMNVSAIQVLIE---NIGSLDRAYEFAERCN--------EPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHh------cccHHHHHHHHH---HhhhHHHHHHHHHhhC--------ChHHHHHHHHHHHhcC
Confidence 3344445556666666654 223444444443 3455666666655542 2234444444433478
Q ss_pred CHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 015590 143 RISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLD 222 (404)
Q Consensus 143 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 222 (404)
.+.+|.+-|-+.. |+..|..+++.+.+.|.|++..+++...++..-+|. +=+.||-+|++.+++.+-++.+.
T Consensus 1119 ~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1119 LVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred chHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc
Confidence 8888887775543 456788888888888888888888877776654443 44578888888888777655432
Q ss_pred HchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh-------
Q 015590 223 EFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMK------- 295 (404)
Q Consensus 223 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~------- 295 (404)
-||......+.+-|...|.++.|.-+|... ..|..|...+...|++..|.+.-++..
T Consensus 1191 -------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~ 1254 (1666)
T KOG0985|consen 1191 -------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKE 1254 (1666)
T ss_pred -------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH
Confidence 366666666777777777777776666433 335555555555566555554433322
Q ss_pred -----------------hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 015590 296 -----------------GKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVD 358 (404)
Q Consensus 296 -----------------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 358 (404)
...+-....-..-++.-|-..|-+++.+.+++..... -+.....|+-+.-.|++-. +++..
T Consensus 1255 VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfTELaiLYskyk-p~km~ 1332 (1666)
T KOG0985|consen 1255 VCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL-ERAHMGMFTELAILYSKYK-PEKMM 1332 (1666)
T ss_pred HHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHhcC-HHHHH
Confidence 1111112222334444444555555555544443311 0122334444444444432 33333
Q ss_pred HHHHHHHHC-CCCCCHHhHHHHHHhhccCCCCcchhhHHHhhhh
Q 015590 359 WVLKKMVQQ-GFVPRMGMWREIVGCVTFGKDNRNRVYVTETVDS 401 (404)
Q Consensus 359 ~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 401 (404)
+-++-.-.+ ++ -.+++++-....|.+.+.++..-++
T Consensus 1333 EHl~LFwsRvNi-------pKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1333 EHLKLFWSRVNI-------PKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHHhcch-------HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333222 22 2566777777777776666654443
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.23 E-value=0.00011 Score=57.08 Aligned_cols=16 Identities=6% Similarity=-0.157 Sum_probs=6.6
Q ss_pred HHHHcCCChHHHHHHH
Q 015590 346 HGLCNQKLVEDVDWVL 361 (404)
Q Consensus 346 ~~~~~~g~~~~a~~~~ 361 (404)
+.|...|++++|+..|
T Consensus 126 di~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 126 DIYLAQGDYDEARAAY 141 (145)
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3344444444444433
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=5e-05 Score=68.24 Aligned_cols=114 Identities=20% Similarity=0.173 Sum_probs=73.3
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
.++++.|.++|+++.+.. |+. ...+++.+...++..+|.+++.+..+.. +.+......-...+.+.++++.|..+
T Consensus 182 t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred cccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 667777777777776654 442 3335566666666667777776666543 44555566666667777777777777
Q ss_pred HHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 221 LDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
.+++.+.. |-+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 257 Ak~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 257 AKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77766653 3344577777777777777777777666654
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.21 E-value=2.9e-06 Score=47.37 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 015590 340 SYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVP 371 (404)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 371 (404)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55666666666666666666666666655555
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.0022 Score=52.70 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=38.1
Q ss_pred cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 015590 211 NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKL 290 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 290 (404)
.|++++|.++++.+.+.+ +.|.+++---+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344444444444444443 334444444344444444444444444444333 122444454444555555555555444
Q ss_pred HHHHhhC
Q 015590 291 LERMKGK 297 (404)
Q Consensus 291 ~~~m~~~ 297 (404)
++++.-.
T Consensus 177 lEE~ll~ 183 (289)
T KOG3060|consen 177 LEELLLI 183 (289)
T ss_pred HHHHHHc
Confidence 4444433
No 138
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.19 E-value=3.1e-05 Score=69.92 Aligned_cols=124 Identities=15% Similarity=0.084 Sum_probs=101.2
Q ss_pred CCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHH
Q 015590 158 NCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL--GVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRT 235 (404)
Q Consensus 158 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 235 (404)
+.+.+......+++.+....+.+.+..++-..... ....-..|..++++.|.+.|..+.+..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34567778888888888888888888888887765 2333345667999999999999999999999889999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 015590 236 YSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQ 281 (404)
Q Consensus 236 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 281 (404)
+|.+|+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999888877777778877777776665
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=0.00022 Score=64.20 Aligned_cols=122 Identities=17% Similarity=0.178 Sum_probs=73.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 015590 202 NILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQ 281 (404)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 281 (404)
..|+..+...++++.|..+|+++.+.. |+ ....++..+...++..+|.+++.+..+.... +......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 344555555666777777777766552 33 3334566666666666677766666654222 444444445556666
Q ss_pred CCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015590 282 GKVEEGMKLLERMKGKGCYPNS-ASYQEVLYGLLDKKRFPEAKELVGRMI 330 (404)
Q Consensus 282 g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (404)
++.+.|+.+.+++... .|+. .+|..|..+|...|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6667777777666665 3433 466666667777777777766666554
No 140
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.14 E-value=4.3e-05 Score=69.03 Aligned_cols=121 Identities=13% Similarity=0.108 Sum_probs=97.0
Q ss_pred CChHHHHHHHHHHHhhcCCHHHHHHHHhhcccC--CCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHH
Q 015590 125 FSDGFFYNVIKIYGNMAGRISKAIETLFDMPSY--NCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLN 202 (404)
Q Consensus 125 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 202 (404)
.+...+..++..... ..+.+.+..++.+.... ....-..|..++++.|.+.|..+.++.++..=...|+=||.+++|
T Consensus 64 vS~~dld~fvn~~~~-~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 64 VSSLDLDIFVNNVES-KDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CcHHHHHHHHhhcCC-HhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334344444444444 67788899988887764 222223566799999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc
Q 015590 203 ILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK 246 (404)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 246 (404)
.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998887677778887777777766
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=0.0096 Score=57.58 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=135.1
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHH
Q 015590 67 NLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISK 146 (404)
Q Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 146 (404)
..+++..|+......+++.+-.+-..++.++. +.+.|+.++|..+++..... ++++......+..+++..|+.++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~---~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGL---KGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccC---CCCchHHHHHHHHHHHHHhhhhH
Confidence 45678888888888877654333333443332 45788888888777776433 24466666666666666888888
Q ss_pred HHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC----------hHH
Q 015590 147 AIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGN----------LEA 216 (404)
Q Consensus 147 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~ 216 (404)
|..+|++..... |+..-...+..+|++.+++.+-.+.--++-+. ++.+.+.+=++++.+...-. ..-
T Consensus 96 ~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 888888887654 77666666777788877776655554444443 34444444445544443311 234
Q ss_pred HHHHHHHchhCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015590 217 AFYVLDEFPKQNCEP-NVRTYSTLMHGLCEKGNVEEAFGLLE-RMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERM 294 (404)
Q Consensus 217 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 294 (404)
|.+.++.+.+.+-+. +..-.-.-...+-..|++++|.+++. ...+.-..-+...-+--+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 556666665543111 11112222333445677888888873 3433333334444455667777788888888888888
Q ss_pred hhCC
Q 015590 295 KGKG 298 (404)
Q Consensus 295 ~~~~ 298 (404)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 7774
No 142
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=0.0011 Score=63.27 Aligned_cols=266 Identities=11% Similarity=0.092 Sum_probs=166.9
Q ss_pred cccCCCCCHHHHH--HHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCC---
Q 015590 50 LNHKDWLSPTEVL--KIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCR--- 124 (404)
Q Consensus 50 ~~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--- 124 (404)
+...|..+-..++ +.|..-|+.+.|..-+.-. .+..+|..+.++|.+.++++-|.-.+..|.......
T Consensus 721 le~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR 793 (1416)
T KOG3617|consen 721 LENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALR 793 (1416)
T ss_pred ccccCHHHHHhhhceeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHH
Confidence 3444555555555 3566668888888776655 256789999999999999999988888775432100
Q ss_pred ---CChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHH
Q 015590 125 ---FSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCL 201 (404)
Q Consensus 125 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 201 (404)
.++.-...-+..++..-|..++|+.+|.+-+. |..|=..|...|.|++|.++-+.--+.. -..||
T Consensus 794 ~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Ty 861 (1416)
T KOG3617|consen 794 RAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTY 861 (1416)
T ss_pred HHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhH
Confidence 00111122233333346777788877776543 3344455666788888877765332221 23456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 015590 202 NILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQ 281 (404)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 281 (404)
......+-..+|.+.|++.|+... .+--..+..|. .++.......+++. |...|.--.......
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~----~hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~ 925 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAG----VHAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESV 925 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcC----ChHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcc
Confidence 666666666777788877777654 22222222221 12333333333332 444455455556678
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 015590 282 GKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVL 361 (404)
Q Consensus 282 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 361 (404)
|+.+.|+.+|....+ |-+++...|-.|+.++|-++-++- -|......+.+.|-..|++.+|..+|
T Consensus 926 GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 926 GEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred cchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999987664 455667777889999998887653 35555666889999999999999998
Q ss_pred HHHH
Q 015590 362 KKMV 365 (404)
Q Consensus 362 ~~m~ 365 (404)
.+..
T Consensus 991 TrAq 994 (1416)
T KOG3617|consen 991 TRAQ 994 (1416)
T ss_pred HHHH
Confidence 7754
No 143
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.06 E-value=5.4e-06 Score=45.08 Aligned_cols=28 Identities=36% Similarity=0.801 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 235 TYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 235 ~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
+|+.+|++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00031 Score=54.51 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHhhcccCCCCccH--HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSV--KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAF 218 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 218 (404)
.|++++|...|+........|+. .....+...+...|++++|+..++..... ......+....+.|.+.|++++|.
T Consensus 61 ~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~ 138 (145)
T PF09976_consen 61 QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEAR 138 (145)
T ss_pred CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHH
Confidence 45555555555554443311111 12223344445555555555555442222 122334444455555555555555
Q ss_pred HHHH
Q 015590 219 YVLD 222 (404)
Q Consensus 219 ~~~~ 222 (404)
..|+
T Consensus 139 ~~y~ 142 (145)
T PF09976_consen 139 AAYQ 142 (145)
T ss_pred HHHH
Confidence 5554
No 145
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.03 E-value=0.00011 Score=52.13 Aligned_cols=78 Identities=10% Similarity=0.252 Sum_probs=49.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHCCCCCCHHhHHH
Q 015590 308 EVLYGLLDKKRFPEAKELVGRMICERM-SPSFVSYKKLIHGLCNQK--------LVEDVDWVLKKMVQQGFVPRMGMWRE 378 (404)
Q Consensus 308 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~ 378 (404)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-+.+.+|+.|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 334445555666666666666666666 666666666666555432 23455667777777777777777777
Q ss_pred HHHhhcc
Q 015590 379 IVGCVTF 385 (404)
Q Consensus 379 ll~~~~~ 385 (404)
+++++.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7776654
No 146
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.03 E-value=0.0001 Score=52.34 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=40.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHhhCCCCCChhhHHHH
Q 015590 239 LMHGLCEKGNVEEAFGLLERMESEGI-DADTVTFNILISGLRKQG--------KVEEGMKLLERMKGKGCYPNSASYQEV 309 (404)
Q Consensus 239 li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~l 309 (404)
.|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-+.+.+|++|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 44444455666666666666666665 556666666655554432 122344555555555555555555555
Q ss_pred HHHHH
Q 015590 310 LYGLL 314 (404)
Q Consensus 310 i~~~~ 314 (404)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55443
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.98 E-value=0.00017 Score=50.81 Aligned_cols=85 Identities=22% Similarity=0.221 Sum_probs=32.4
Q ss_pred HHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHH
Q 015590 172 LLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEE 251 (404)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 251 (404)
.+...|++++|...++...+.. +.+...+..+...+...|++++|.+.|+...+.. +.+..++..+...+...|++++
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHH
Confidence 3333444444444444443332 1222333333344444444444444444433322 2222333333444444444444
Q ss_pred HHHHHHH
Q 015590 252 AFGLLER 258 (404)
Q Consensus 252 A~~~~~~ 258 (404)
|...+..
T Consensus 87 a~~~~~~ 93 (100)
T cd00189 87 ALEAYEK 93 (100)
T ss_pred HHHHHHH
Confidence 4444433
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.97 E-value=1e-05 Score=43.93 Aligned_cols=29 Identities=41% Similarity=0.789 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 015590 270 TFNILISGLRKQGKVEEGMKLLERMKGKG 298 (404)
Q Consensus 270 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 298 (404)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 55666666666666666666666665554
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.0003 Score=49.44 Aligned_cols=92 Identities=21% Similarity=0.185 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 015590 202 NILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQ 281 (404)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 281 (404)
..+...+...|++++|...++...+.. +.+...+..+...+...+++++|...|+........ +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 344445555555666655555554432 223344555555555555555555555555443222 223444444555555
Q ss_pred CCHHHHHHHHHHHh
Q 015590 282 GKVEEGMKLLERMK 295 (404)
Q Consensus 282 g~~~~a~~~~~~m~ 295 (404)
|+.++|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555555444
No 150
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.85 E-value=0.00044 Score=55.62 Aligned_cols=128 Identities=17% Similarity=0.250 Sum_probs=79.5
Q ss_pred HHHHHHchhCCCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015590 218 FYVLDEFPKQNCEPNVRTYSTLMHGLCEK-----GNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLE 292 (404)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 292 (404)
...|+..... ..|..+|..+++.|.+. |..+-....++.|.+-|+.-|..+|+.|++.+=+ |.+-
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------- 103 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------- 103 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-------
Confidence 3444444222 56777777777777654 5667777777777777777777788777776553 3221
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHH
Q 015590 293 RMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLV-EDVDWVLKKMVQ 366 (404)
Q Consensus 293 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 366 (404)
|. ..+.++..-| -.+-+-|++++++|...|+.||..++..+++.+++.+.. .+..++.--|-+
T Consensus 104 --------p~-n~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 104 --------PR-NFFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred --------cc-cHHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11 1111111111 234567888888888888888888888888888877653 444444444433
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.85 E-value=0.00055 Score=59.49 Aligned_cols=145 Identities=13% Similarity=0.087 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCChHHHHHHHHHchhCCCCCcHHHHHHHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCE-NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG 242 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 242 (404)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|.....+-.. .++.+.|.++|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467777777777777888888888887543 3344445444444333 45666688888877654 25667777788888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 015590 243 LCEKGNVEEAFGLLERMESEGIDAD---TVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGL 313 (404)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 313 (404)
+.+.|+.+.|..+|++.... +.++ ...|...+..-.+.|+.+.+..+.+++.+. -|+......+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 88888888888888887655 2222 237777777777788888888888777765 44444444444433
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.001 Score=49.46 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHH
Q 015590 238 TLMHGLCEKGNVEEAFGLLERMESEGID--ADTVTFNILISGLRKQGKVEEGMKLLERMKGKGC--YPNSASYQEVLYGL 313 (404)
Q Consensus 238 ~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~ 313 (404)
.....+.+.|++++|...|+.+...... .....+..+...+.+.|++++|...|+.+..... ......+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444445555555555544433111 0112333344444445555555555554443310 01123344444444
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 015590 314 LDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 314 ~~~g~~~~a~~~~~~~~~~ 332 (404)
.+.|+.++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 4445555555555544443
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.82 E-value=0.00077 Score=58.56 Aligned_cols=130 Identities=10% Similarity=0.016 Sum_probs=93.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHH-HHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 015590 130 FYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNL-LVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGL 208 (404)
Q Consensus 130 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 208 (404)
+|.....+.++.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444456666788999999999987643 1233445444444 33357777799999998876 577888889999999
Q ss_pred HhcCChHHHHHHHHHchhCCCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 209 CENGNLEAAFYVLDEFPKQNCEPNV---RTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
.+.++.+.|..+|+..... ++++. ..|...+.-=.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988765 23332 48999999889999999999999888875
No 154
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.79 E-value=0.00034 Score=56.22 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 015590 182 IQGIYTSAAKLGVEIDACCLNILLKGLCEN-----GNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLL 256 (404)
Q Consensus 182 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 256 (404)
....|+.... -..+..+|..+++.|.+. |..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|
T Consensus 33 ~~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~f 108 (228)
T PF06239_consen 33 HEELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFF 108 (228)
T ss_pred hHHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHH
Confidence 3444444432 257889999999999865 7788888889999999999999999999998775 3322 11222
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 015590 257 ERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKR 318 (404)
Q Consensus 257 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 318 (404)
+.+-.. .-.+-+-|++++++|...|+.||..++..+++.+++.+.
T Consensus 109 Q~~F~h-----------------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFMH-----------------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhcc-----------------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 222111 113345677788888888888888888888888776654
No 155
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.78 E-value=0.0073 Score=55.13 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=109.7
Q ss_pred HhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015590 179 YGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEP-NVRTYSTLMHGLCEKGNVEEAFGLLE 257 (404)
Q Consensus 179 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~ 257 (404)
.+....+++.+...-..--..+|..+++.--+..-++.|..+|.+..+.+..+ ++..++++|.-||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55666666666654323334577778888888888888888998888876666 77788888887665 67788888887
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 258 RMESEGIDADTVTF-NILISGLRKQGKVEEGMKLLERMKGKGCYPNS--ASYQEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 258 ~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
--.+. -+|...| ...+..+...++-..+..+|++....++.|+. ..|..+|+--..-|++..+.++-+++...
T Consensus 426 LGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 65544 2233333 56677778888888888899888888666553 67888888888888888888887776543
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.77 E-value=0.00086 Score=49.82 Aligned_cols=27 Identities=33% Similarity=0.191 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHchhC
Q 015590 201 LNILLKGLCENGNLEAAFYVLDEFPKQ 227 (404)
Q Consensus 201 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 227 (404)
+..+..++.+.|+.++|...++++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 333334444444444444444444433
No 157
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.032 Score=51.01 Aligned_cols=201 Identities=15% Similarity=0.100 Sum_probs=137.9
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHH-------HHH
Q 015590 133 VIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLN-------ILL 205 (404)
Q Consensus 133 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-------~li 205 (404)
+....+. ..+++.|++.+....+.. -+..-++....++...|.+.+....-....+.|.. ...-|+ .+.
T Consensus 230 lgnaayk-kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 230 LGNAAYK-KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHH-hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 3344444 677888888888877754 44555667777888999888888877777766522 222222 234
Q ss_pred HHHHhcCChHHHHHHHHHchhCCCCCcHHHHH-------------------------HHHHHHHHcCCHHHHHHHHHHHH
Q 015590 206 KGLCENGNLEAAFYVLDEFPKQNCEPNVRTYS-------------------------TLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
.+|.+.++++.+...|.+.......|+..+-. .-.+.+.+.|++..|+..|.++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 46777788999999888766543344432211 12345677899999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 015590 261 SEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPN-SASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFV 339 (404)
Q Consensus 261 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 339 (404)
+.... |...|..-.-+|.+.|.+..|+.=.+...+. .|+ ...|..=..++....+++.|.+.|++..+. .|+..
T Consensus 386 kr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~ 460 (539)
T KOG0548|consen 386 KRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNA 460 (539)
T ss_pred hcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhH
Confidence 88644 7889999999999999999999887777766 233 233333334444456889999999998875 45544
Q ss_pred HHH
Q 015590 340 SYK 342 (404)
Q Consensus 340 ~~~ 342 (404)
-+.
T Consensus 461 e~~ 463 (539)
T KOG0548|consen 461 EAI 463 (539)
T ss_pred HHH
Confidence 433
No 158
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.73 E-value=0.031 Score=50.10 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 015590 269 VTFNILISGLRKQGKVEEGMKLLERMKGKG-CYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSY-KKLIH 346 (404)
Q Consensus 269 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~li~ 346 (404)
..|...+..-.+..-.+.|..+|-+..+.| +.+++..+++++..++ .|+...|..+|+.-... -||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456777888788888999999999999988 6788888999998655 57888999999876654 3444443 45667
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCC--HHhHHHHHHhhccCCCCcchhhHHHhhhh
Q 015590 347 GLCNQKLVEDVDWVLKKMVQQGFVPR--MGMWREIVGCVTFGKDNRNRVYVTETVDS 401 (404)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 401 (404)
-+...++-+.|..+|+.-+++ +.-+ ...|..+|..=..-|+..++..+.+.+++
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 778889999999999966553 2222 34788888877777888888777777654
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.73 E-value=0.013 Score=49.62 Aligned_cols=176 Identities=13% Similarity=0.077 Sum_probs=88.0
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHH---HHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH-
Q 015590 170 LNLLVSAKLYGEIQGIYTSAAKLGVEIDACCL---NILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE- 245 (404)
Q Consensus 170 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~- 245 (404)
...+.+.|++++|.+.|+.+...- +-+.... -.+..+|.+.+++++|...+++..+....-....|...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 333445666666666666666542 1112221 23445566666666666666666554311112223333333221
Q ss_pred -c---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhH
Q 015590 246 -K---------------GN---VEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASY 306 (404)
Q Consensus 246 -~---------------~~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 306 (404)
. .+ ..+|+..|+++.+. -|+ ..-..+|...+..+... -...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~----la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR----LAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH----HHHHH
Confidence 0 11 22344445444443 222 22234444433333322 00111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 307 QEVLYGLLDKKRFPEAKELVGRMICE--RMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 307 ~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
-.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 13455577777777777777777765 233344556667777878888777777666553
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.72 E-value=0.0023 Score=51.23 Aligned_cols=85 Identities=14% Similarity=0.059 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHH
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEID--ACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG 242 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 242 (404)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555555556666666666665554322111 2455555666666666666666666555442 2334445555555
Q ss_pred HHHcCCHH
Q 015590 243 LCEKGNVE 250 (404)
Q Consensus 243 ~~~~~~~~ 250 (404)
+...|+..
T Consensus 116 ~~~~g~~~ 123 (172)
T PRK02603 116 YHKRGEKA 123 (172)
T ss_pred HHHcCChH
Confidence 55555533
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.72 E-value=0.0061 Score=53.18 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 307 QEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 307 ~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
..+...+.+.|++++|.++|++...
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444445555555555555555443
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.71 E-value=0.012 Score=49.85 Aligned_cols=180 Identities=12% Similarity=0.047 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHH-H---HHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHH
Q 015590 129 FFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVK-T---FNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNIL 204 (404)
Q Consensus 129 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 204 (404)
..+........ .|++++|.+.|+++.... |+.. . .-.+..++.+.+++++|...+++..+.-......-+...
T Consensus 34 ~~Y~~A~~~~~-~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 34 EIYATAQQKLQ-DGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 34344444444 688888888888887643 3322 2 234567778888888888888888876422222233333
Q ss_pred HHHHHh--cC---------------C---hHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 015590 205 LKGLCE--NG---------------N---LEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGI 264 (404)
Q Consensus 205 i~~~~~--~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 264 (404)
+.+.+. .+ | ..+|...|+. ++.-|-...-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~---------------li~~yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK---------------LVRGYPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH---------------HHHHCcCChhHHHHHHHHHHHHHH--
Confidence 333321 11 1 1223333333 444444444455555554444332
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015590 265 DADTVTFNILISGLRKQGKVEEGMKLLERMKGK--GCYPNSASYQEVLYGLLDKKRFPEAKELVGRMI 330 (404)
Q Consensus 265 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (404)
.-..- -.+.+.|.+.|.+..|..-++.+.+. +..........++.+|...|..++|.++...+.
T Consensus 174 -la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 01111 24566688888888888888888877 444455667788888888888888888776654
No 163
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.69 E-value=0.061 Score=52.31 Aligned_cols=224 Identities=13% Similarity=0.102 Sum_probs=147.4
Q ss_pred HhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHh-hcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHh
Q 015590 102 AQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGN-MAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYG 180 (404)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 180 (404)
...+++..|..-...+...- |+..+...+.++.. +.|+.++|..+++.....+.. |..|...+-.+|...++.+
T Consensus 20 ld~~qfkkal~~~~kllkk~----Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH----PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 46678888888888876543 34444444433332 489999999999888775533 7789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcC-C---------HH
Q 015590 181 EIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKG-N---------VE 250 (404)
Q Consensus 181 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~---------~~ 250 (404)
+|..+|+...+. -|+......+..+|.+-+++.+-.+.--++-+. .+.+...+=++++.+.+.- . ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999876 466778888889999988876544433333332 1334444444445444432 1 22
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHH-HHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 015590 251 EAFGLLERMESEG-IDADTVTFNILISGLRKQGKVEEGMKLLE-RMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGR 328 (404)
Q Consensus 251 ~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (404)
-|.+.++.+.+.+ .--+..-...-...+...|++++|++++. ...+.-...+...-+--+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555566665543 11122222233444567788999999994 444443334455555667778888999999999988
Q ss_pred HHHCC
Q 015590 329 MICER 333 (404)
Q Consensus 329 ~~~~~ 333 (404)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88875
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.67 E-value=0.0017 Score=58.48 Aligned_cols=86 Identities=8% Similarity=-0.084 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
.|++++|++.|++..+.+ +.+...|..+..++.+.|++++|+..++.+.+.. +.+...|..+..+|...|++++|...
T Consensus 15 ~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 678888888888777654 2245567777777777788888888887777764 44566777777777778888888888
Q ss_pred HHHchhCC
Q 015590 221 LDEFPKQN 228 (404)
Q Consensus 221 ~~~~~~~~ 228 (404)
|+...+.+
T Consensus 93 ~~~al~l~ 100 (356)
T PLN03088 93 LEKGASLA 100 (356)
T ss_pred HHHHHHhC
Confidence 77777653
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.67 E-value=0.0021 Score=51.25 Aligned_cols=94 Identities=17% Similarity=0.033 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHH
Q 015590 163 VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEI--DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLM 240 (404)
Q Consensus 163 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 240 (404)
...|..+...+...|++++|+..|+........+ ...++..+...|...|++++|...++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3456666666777777777777777776553222 23466777777777777777777777766543 33344555555
Q ss_pred HHHH-------HcCCHHHHHHHHH
Q 015590 241 HGLC-------EKGNVEEAFGLLE 257 (404)
Q Consensus 241 ~~~~-------~~~~~~~A~~~~~ 257 (404)
..+. ..|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 5555554444443
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=0.00017 Score=49.98 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=7.8
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 015590 204 LLKGLCENGNLEAAFYVLDE 223 (404)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~ 223 (404)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33333334444444433333
No 167
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.65 E-value=0.0053 Score=59.99 Aligned_cols=182 Identities=15% Similarity=0.097 Sum_probs=114.0
Q ss_pred CCHHHHHHHHhhcccCCCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 142 GRISKAIETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 142 g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
.+...|+..|-+..+.+ |+ ...|..|...|....+...|.+.|+...+.. +.|........+.|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 44666666666655533 33 3467777777777777777888887777664 45666777777888888888888777
Q ss_pred HHHchhCCCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 015590 221 LDEFPKQNCEPNVRTYST--LMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKG 298 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 298 (404)
.-...+.. +.-...+|. .--.|.+.++..+|..-|+......++ |...|..+..+|..+|.+..|.++|.+....
T Consensus 549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 33322221 112222222 233455667777777777777665444 6677788888888888888888888777655
Q ss_pred CCCChhhHHHHHH--HHHhcCChhHHHHHHHHHHH
Q 015590 299 CYPNSASYQEVLY--GLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 299 ~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~ 331 (404)
+|+. +|...-. .-+..|.+.+|+..++....
T Consensus 626 -rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 -RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3432 2222222 23556777777777776653
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.64 E-value=0.0014 Score=50.38 Aligned_cols=94 Identities=6% Similarity=-0.054 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHH
Q 015590 94 YTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLL 173 (404)
Q Consensus 94 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 173 (404)
.-.+...+...|++++|.++|+.+...+ |.+..+|.-+...+...|++++|+..|......+ +-|+..+-.+..++
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 3344444455555555555555554333 3344444444444444555555555555554433 12344455555555
Q ss_pred HhcCcHhHHHHHHHHHHH
Q 015590 174 VSAKLYGEIQGIYTSAAK 191 (404)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~ 191 (404)
...|+.+.|.+.|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555554443
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.63 E-value=0.0017 Score=58.57 Aligned_cols=92 Identities=14% Similarity=0.031 Sum_probs=75.7
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCH
Q 015590 170 LNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNV 249 (404)
Q Consensus 170 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 249 (404)
...+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|...++...+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 455667889999999999988875 5567788888888899999999999998888775 55677888888888899999
Q ss_pred HHHHHHHHHHHHCC
Q 015590 250 EEAFGLLERMESEG 263 (404)
Q Consensus 250 ~~A~~~~~~m~~~~ 263 (404)
++|...|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999998888763
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.61 E-value=0.0038 Score=47.99 Aligned_cols=93 Identities=13% Similarity=-0.045 Sum_probs=56.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 015590 203 ILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQG 282 (404)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 282 (404)
.+...+...|++++|.++|+-+.... +-+..-|-.|...+-..|++++|+..|.......+. |+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 34444555666666666666665554 444555556666666666666666666666655433 5556666666666666
Q ss_pred CHHHHHHHHHHHhhC
Q 015590 283 KVEEGMKLLERMKGK 297 (404)
Q Consensus 283 ~~~~a~~~~~~m~~~ 297 (404)
+.+.|.+.|+.....
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666655544
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.60 E-value=0.0022 Score=51.17 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 233 VRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDA--DTVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 233 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
...|..+...+...|++++|+..|++.......| ...+|..+...+...|+.++|+..++.....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445555555666666666666666665442221 1235555666666666666666666665544
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.0055 Score=57.87 Aligned_cols=144 Identities=12% Similarity=-0.040 Sum_probs=94.3
Q ss_pred CCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHh
Q 015590 229 CEPNVRTYSTLMHGLCEKG-----NVEEAFGLLERMESEGIDADTVTFNILISGLRKQ--------GKVEEGMKLLERMK 295 (404)
Q Consensus 229 ~~~~~~~~~~li~~~~~~~-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~ 295 (404)
.+.+...|...+.+..... +.++|..+|++..+.... ....|..+..++... ++...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3667788888888754432 266888888888877322 233444333333221 12233444444433
Q ss_pred hC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 015590 296 GK-GCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMG 374 (404)
Q Consensus 296 ~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 374 (404)
.. ....+...|..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++.. .+.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~--~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF--NLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCc
Confidence 32 12334567777766666789999999999999885 4788888888899999999999999998887 4556555
Q ss_pred hHH
Q 015590 375 MWR 377 (404)
Q Consensus 375 ~~~ 377 (404)
+|.
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 544
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.59 E-value=0.00019 Score=49.71 Aligned_cols=16 Identities=44% Similarity=0.569 Sum_probs=5.9
Q ss_pred HHHHcCCCHHHHHHHH
Q 015590 276 SGLRKQGKVEEGMKLL 291 (404)
Q Consensus 276 ~~~~~~g~~~~a~~~~ 291 (404)
.+|.+.|++++|..++
T Consensus 33 ~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 33 QCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHTTHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3333333333333333
No 174
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.58 E-value=0.0049 Score=60.18 Aligned_cols=185 Identities=10% Similarity=-0.018 Sum_probs=118.7
Q ss_pred ChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHH
Q 015590 70 DPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIE 149 (404)
Q Consensus 70 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 149 (404)
+...|+..|-+.++.. +.-...|..|...|+...+..+|.+.|+..-+.+ +++...+..+...+....+++.|..
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhccccHHHHHH
Confidence 3556666666655432 2224567888888888888888888888876554 4455455444444444888888888
Q ss_pred HHhhcccCCC-CccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCC
Q 015590 150 TLFDMPSYNC-WPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQN 228 (404)
Q Consensus 150 ~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 228 (404)
+.-..-+... ..-...|....-.|.+.++..++..-|+...+.. |.|...|..+..+|.++|++..|.++|......+
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 8443333210 0011233334445677888888888888887765 6688888999999999999999999998877653
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015590 229 CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMES 261 (404)
Q Consensus 229 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 261 (404)
|.+...---..-.-+..|.+.+|+..+.....
T Consensus 627 -P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 -PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22222211222334667888888888776643
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.57 E-value=0.0051 Score=49.23 Aligned_cols=91 Identities=14% Similarity=0.083 Sum_probs=62.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015590 197 DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPN--VRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNIL 274 (404)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 274 (404)
....+..+...|...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++....... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 344567777778888888888888888775432221 356777888888888888888888887765322 45556666
Q ss_pred HHHHHcCCCHHHHH
Q 015590 275 ISGLRKQGKVEEGM 288 (404)
Q Consensus 275 i~~~~~~g~~~~a~ 288 (404)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66676666654433
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.53 E-value=0.008 Score=56.81 Aligned_cols=63 Identities=13% Similarity=-0.006 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 267 DTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
+...|.++.-.+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33455555444445566666666666666653 4555666666666666666666666666654
No 177
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.53 E-value=0.056 Score=47.73 Aligned_cols=140 Identities=13% Similarity=0.094 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 015590 234 RTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGL 313 (404)
Q Consensus 234 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 313 (404)
.+.+..|.-+...|+...|.++-.+.. .||..-|-..+.+++..++|++-.++... . -.+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 455666777788899888888876663 46888999999999999999988876543 1 1457889999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchh
Q 015590 314 LDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRV 393 (404)
Q Consensus 314 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 393 (404)
.+.|...+|..++..+. +..-+..|.+.|++.+|.+...+.. |...+..+...+....+...+.
T Consensus 248 ~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~~~~~~~~ 311 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGNNDQLIAD 311 (319)
T ss_pred HHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCCChHHHHH
Confidence 99999999999888731 2445778899999999988766543 4445555555444443333334
Q ss_pred hHHHhh
Q 015590 394 YVTETV 399 (404)
Q Consensus 394 ~~~~~~ 399 (404)
.+..++
T Consensus 312 ~i~~~~ 317 (319)
T PF04840_consen 312 KIEQML 317 (319)
T ss_pred HHHHHH
Confidence 444443
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.51 E-value=0.00083 Score=44.25 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=38.4
Q ss_pred HhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHH
Q 015590 174 VSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYS 237 (404)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (404)
.+.|++++|+++|+.+.+.. |-+..+...+..+|.+.|++++|..+++.+... .|+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 35667777777777776654 446666666777777777777777777777665 34433333
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.50 E-value=0.0095 Score=44.04 Aligned_cols=87 Identities=22% Similarity=0.140 Sum_probs=39.7
Q ss_pred HHHHhcCcHhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCc----HHHHHHHHHHHH
Q 015590 171 NLLVSAKLYGEIQGIYTSAAKLGVEID--ACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPN----VRTYSTLMHGLC 244 (404)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~ 244 (404)
.++-..|+.++|+.+|++....|...+ ...+-.+...+...|++++|..+|++..... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344445555555555555555543322 2233344445555555555555555544331 21 111112223444
Q ss_pred HcCCHHHHHHHHHHH
Q 015590 245 EKGNVEEAFGLLERM 259 (404)
Q Consensus 245 ~~~~~~~A~~~~~~m 259 (404)
..|+.++|+..+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 555555555555443
No 180
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.13 Score=49.17 Aligned_cols=292 Identities=12% Similarity=0.068 Sum_probs=169.7
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccC-CCChHHHHHHHH
Q 015590 57 SPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLC-RFSDGFFYNVIK 135 (404)
Q Consensus 57 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~l~ 135 (404)
+-..+|.-+...+.+..|+++-.++... .......|......+.+..+... .++++.+.+.-.. ..+...+..+..
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~p--~~~~~~Vl~~Wa~~kI~~~d~~d-~~vld~I~~kls~~~~~~iSy~~iA~ 515 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNLP--ESQGDRVLLEWARRKIKQSDKMD-EEVLDKIDEKLSAKLTPGISYAAIAR 515 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCCc--cccccHHHHHHHHHHHhccCccc-hHHHHHHHHHhcccCCCceeHHHHHH
Confidence 3456888888899999999999888322 22226778888887777643221 2233333222111 123344555555
Q ss_pred HHHhhcCCHHHHHHHHhhcccCCCC----ccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcC-----------CCCCHhH
Q 015590 136 IYGNMAGRISKAIETLFDMPSYNCW----PSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLG-----------VEIDACC 200 (404)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----------~~~~~~~ 200 (404)
..+. +|+.+.|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+...- .+.....
T Consensus 516 ~Ay~-~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~l 594 (829)
T KOG2280|consen 516 RAYQ-EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSL 594 (829)
T ss_pred HHHh-cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHH
Confidence 5555 99999999998765443311 122335556677788888888877776665431 1222222
Q ss_pred HHHHHHH--------HHhcCChHHHHHHHH--Hch----hCCCCCcHHHHHHHHHHHHHcCC----------HHHHHHHH
Q 015590 201 LNILLKG--------LCENGNLEAAFYVLD--EFP----KQNCEPNVRTYSTLMHGLCEKGN----------VEEAFGLL 256 (404)
Q Consensus 201 ~~~li~~--------~~~~g~~~~a~~~~~--~~~----~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~ 256 (404)
|.-+++- +...++-.++...|. ... ..|..|+ .....+.+.+... ..+-+.+.
T Consensus 595 Y~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ 671 (829)
T KOG2280|consen 595 YRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQ 671 (829)
T ss_pred HHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3222220 111122122222111 100 0111222 2233344444333 11222233
Q ss_pred HHHHH-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 015590 257 ERMES-EGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMS 335 (404)
Q Consensus 257 ~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 335 (404)
+.+.. .|......+.+--+.-+...|+..+|.++-.+.+ -||...|..=+.+++..++|++-+++-+...
T Consensus 672 ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk----- 742 (829)
T KOG2280|consen 672 RTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK----- 742 (829)
T ss_pred HHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----
Confidence 33322 2334445556666777778899999999888776 5688889888999999999988777766553
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 336 PSFVSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 336 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
++.-|.-...+|.+.|+.++|.+++.+..
T Consensus 743 -sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 743 -SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred -CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 24557778899999999999999887764
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.34 E-value=0.00075 Score=44.46 Aligned_cols=51 Identities=25% Similarity=0.350 Sum_probs=23.9
Q ss_pred cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 211 NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
.|++++|.+.|+.+.+.. +-+...+..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555544433 334444444555555555555555555544443
No 182
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.32 E-value=0.0077 Score=46.69 Aligned_cols=57 Identities=28% Similarity=0.397 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015590 202 NILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERM 259 (404)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 259 (404)
..++..+...|+++.|..+...+.... |.|...|..+|.+|...|+..+|.+.|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 344445555556666666555555544 445555566666666666666666555554
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.30 E-value=0.17 Score=48.11 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=58.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhC----CCCCCh----hhHHHH-HHHHH----------hcCChhHHHHHHHHHHHC---
Q 015590 275 ISGLRKQGKVEEGMKLLERMKGK----GCYPNS----ASYQEV-LYGLL----------DKKRFPEAKELVGRMICE--- 332 (404)
Q Consensus 275 i~~~~~~g~~~~a~~~~~~m~~~----~~~p~~----~~~~~l-i~~~~----------~~g~~~~a~~~~~~~~~~--- 332 (404)
|..+.+.|..-.|-+++.+|.+. +.+|-. .+..++ +.-+. ..|..++|..+++.-...
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ 1009 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQS 1009 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHH
Confidence 44555667666666777666544 222211 111111 11111 246666666655433211
Q ss_pred ----CCCCCHHHHH--HHHHHHHcCCChHHHHHHHHHHHHC-CCCCCHHhHHHHHHhhccCCC
Q 015590 333 ----RMSPSFVSYK--KLIHGLCNQKLVEDVDWVLKKMVQQ-GFVPRMGMWREIVGCVTFGKD 388 (404)
Q Consensus 333 ----~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~ 388 (404)
+.-.....|. .|.+--...|.++.|.+.--.+.+- ++-|....|..|.-+.+..+.
T Consensus 1010 ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ra 1072 (1189)
T KOG2041|consen 1010 RILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRA 1072 (1189)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhh
Confidence 0111223333 4445556678888888766555543 677888888776654444333
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.29 E-value=0.0015 Score=42.52 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=24.5
Q ss_pred HHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 207 GLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
.+.+.|++++|.+.|+++.+.. +-+...+..+...+.+.|++++|...|+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555444443 3344444444444445555555554444443
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.28 E-value=0.016 Score=42.91 Aligned_cols=99 Identities=16% Similarity=0.045 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHhhcccCCCCcc--HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHhcCChH
Q 015590 141 AGRISKAIETLFDMPSYNCWPS--VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEI---DACCLNILLKGLCENGNLE 215 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~ 215 (404)
.|+.++|+.+|++....|+... ...+-.+...+...|++++|..+++...... +. +......+..++...|+.+
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~~~gr~~ 92 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALYNLGRPK 92 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHHCCCHH
Confidence 7888888888888888775443 2356667788888899999999998887652 21 2233333445677788999
Q ss_pred HHHHHHHHchhCCCCCcHHHHHHHHHHHH
Q 015590 216 AAFYVLDEFPKQNCEPNVRTYSTLMHGLC 244 (404)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 244 (404)
+|..++-.... ++...|.--|..|.
T Consensus 93 eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 93 EALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 88888776553 33335555555554
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.24 E-value=0.12 Score=45.16 Aligned_cols=92 Identities=18% Similarity=0.172 Sum_probs=49.6
Q ss_pred HHHHHhc-CChHHHHHHHHHchh----CCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHH-HH
Q 015590 205 LKGLCEN-GNLEAAFYVLDEFPK----QNCEPN--VRTYSTLMHGLCEKGNVEEAFGLLERMESEGID-----ADTV-TF 271 (404)
Q Consensus 205 i~~~~~~-g~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-----p~~~-~~ 271 (404)
...|-.. |++++|.+.|++..+ .| .+. ...+..+...+.+.|++++|..+|++....... .+.. .|
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 3444444 667777776666543 12 111 234555667777788888888888777654322 1111 22
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 272 NILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 272 ~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
...+-.+...|++..|.+.+++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22333455567777777777777655
No 187
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.24 E-value=0.012 Score=45.69 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----CCCCCCHHhHH
Q 015590 305 SYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ-----QGFVPRMGMWR 377 (404)
Q Consensus 305 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 377 (404)
+...++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45567777888999999999999998763 55788999999999999999999999987753 38888887643
No 188
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.0054 Score=51.84 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=74.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 015590 241 HGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFP 320 (404)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 320 (404)
+-..+.+++++|+..|.+..+.... |.+-|..=..+|++.|.++.|++=.+.....+. -...+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHH
Confidence 4466778888888888888876444 667777778888888888888877777766521 13467888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015590 321 EAKELVGRMICERMSPSFVSYKKLIH 346 (404)
Q Consensus 321 ~a~~~~~~~~~~~~~p~~~~~~~li~ 346 (404)
+|++.|++..+ +.|+-.+|..=+.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 88888888776 5677666655443
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.18 E-value=0.055 Score=44.59 Aligned_cols=52 Identities=15% Similarity=0.071 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHhhcccCC--CCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc
Q 015590 141 AGRISKAIETLFDMPSYN--CWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL 192 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 192 (404)
.|++++|.+.|+.+...- -+--....-.++.++.+.|+++.|...++..++.
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566666666666655421 0011223444555566666666666666665554
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.18 E-value=0.064 Score=50.34 Aligned_cols=54 Identities=13% Similarity=0.007 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 235 TYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 235 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
+...+..-+.+...+.-|-++|.+|-.. ..+++.....+++++|..+-++..+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc
Confidence 3333444444555566677777666421 24556666777777777776665544
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.028 Score=46.70 Aligned_cols=129 Identities=13% Similarity=0.050 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----H
Q 015590 202 NILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILI-----S 276 (404)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li-----~ 276 (404)
+.+++...-.|.+.-....+++..+..-+.+....+.+.+.-.+.|+.+.|...|++..+..-+.|..+++.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34444444445555555555555554434455555555555555666666666665554433333333333222 2
Q ss_pred HHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 277 GLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 277 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
.|.-.+++..|...|.+....+.. |+...|.=.-+..-.|+...|++.++.|..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233344555555555555544211 222222222222334555555555555554
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.15 E-value=0.071 Score=43.92 Aligned_cols=171 Identities=15% Similarity=0.107 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHH
Q 015590 166 FNLVLNLLVSAKLYGEIQGIYTSAAKLGV--EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 166 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
+-.....+...|++++|.+.|+.+...-. +--....-.++.++.+.|+++.|...+++..+.-..-....+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33345556678888888888888887621 1223345567778888888888888888877652111112222223222
Q ss_pred HHcCC-------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 015590 244 CEKGN-------------VEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVL 310 (404)
Q Consensus 244 ~~~~~-------------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 310 (404)
+.-.. ..+|... +..++.-|=...-..+|...+..+.+. =...--.+.
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 21111 1222333 333444444445555555555444432 011112245
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHcCCChHHH
Q 015590 311 YGLLDKKRFPEAKELVGRMICERMSPSF----VSYKKLIHGLCNQKLVEDV 357 (404)
Q Consensus 311 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a 357 (404)
..|.+.|.+..|..-++.+++. -|+. .....++.+|.+.|..+.+
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 6677778888888888877765 2332 3445666777777776643
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.14 E-value=0.0023 Score=41.67 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=23.9
Q ss_pred HHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 277 GLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 277 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
.+...|++++|...|++..+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444442 11334444444444444555555555444443
No 194
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.0093 Score=50.47 Aligned_cols=84 Identities=10% Similarity=-0.028 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
.+++++|+..|.+..+.. +.|.+-|..-..+|.+.|.++.|++-.+..+... +.-..+|..|..+|...|++++|.+.
T Consensus 94 ~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 444444444444444432 1233334444444444444444444444444332 22233444444444444444444444
Q ss_pred HHHchh
Q 015590 221 LDEFPK 226 (404)
Q Consensus 221 ~~~~~~ 226 (404)
|+...+
T Consensus 172 ykKaLe 177 (304)
T KOG0553|consen 172 YKKALE 177 (304)
T ss_pred HHhhhc
Confidence 444443
No 195
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.10 E-value=0.18 Score=44.60 Aligned_cols=111 Identities=19% Similarity=0.220 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015590 199 CCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGL 278 (404)
Q Consensus 199 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 278 (404)
.+.+.-|.-+...|+...|.++-.+.. -|+..-|-..+.+++..++|++-..+-.. +-++..|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 355566777888999999999988886 68999999999999999999987775432 12568899999999
Q ss_pred HcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 015590 279 RKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 279 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 329 (404)
.+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-.+.
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999988772 2245678889999999998776544
No 196
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.08 E-value=0.016 Score=43.35 Aligned_cols=95 Identities=11% Similarity=0.132 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015590 267 DTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIH 346 (404)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 346 (404)
|..++..++.++++.|+.+....+.+..- |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566677777777777776666665443 22221100 0000 1112246788888889999
Q ss_pred HHHcCCChHHHHHHHHHHHHC-CCCCCHHhHHHHHH
Q 015590 347 GLCNQKLVEDVDWVLKKMVQQ-GFVPRMGMWREIVG 381 (404)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~ 381 (404)
+|+..|++..|.++.+...+. ++..+..+|..|+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999899999999999888876 88888888888887
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.06 E-value=0.0031 Score=41.58 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHH
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENG-NLEAAFYVLDE 223 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~ 223 (404)
+|..+...+...|++++|+..|++..+.. +.+...+..+..+|.+.| ++++|.+.++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33333444444444444444444444332 223333333444444443 34444443333
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.15 Score=42.61 Aligned_cols=154 Identities=18% Similarity=0.075 Sum_probs=112.8
Q ss_pred HHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 015590 144 ISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDE 223 (404)
Q Consensus 144 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 223 (404)
.+..+++|++-. ..+.+.+++.+.-.|.+.-....+...++...+.++.....|.+.-...||.+.|...|++
T Consensus 165 ~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 355555655422 3456778888888899999999999999987677888999999999999999999999998
Q ss_pred chhCCCCCcHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 015590 224 FPKQNCEPNVRTYSTL-----MHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKG 298 (404)
Q Consensus 224 ~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 298 (404)
..+..-..|..+.+.+ ...|.-.+++..|...|.+....+.. |++.-|.-.-+....|+...|.+..+.|.+.
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~- 315 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ- 315 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 8765434454444443 34566677888999999888776433 5555554444445569999999999999988
Q ss_pred CCCChhhHH
Q 015590 299 CYPNSASYQ 307 (404)
Q Consensus 299 ~~p~~~~~~ 307 (404)
.|...+-+
T Consensus 316 -~P~~~l~e 323 (366)
T KOG2796|consen 316 -DPRHYLHE 323 (366)
T ss_pred -CCccchhh
Confidence 44444433
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.067 Score=45.62 Aligned_cols=101 Identities=11% Similarity=0.051 Sum_probs=48.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHhhCCCCCChhhH
Q 015590 230 EPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQ---GKVEEGMKLLERMKGKGCYPNSASY 306 (404)
Q Consensus 230 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~ 306 (404)
+-|...|-.|...|.+.|+.+.|..-|.+..+... ++...+..+..++... ....++.++|+++..... -|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence 44555555555555555555555555555544311 1333333333332221 123455555555555421 133444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 307 QEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 307 ~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44444555556666666666655554
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.01 E-value=0.004 Score=41.03 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=46.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHC
Q 015590 197 DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKG-NVEEAFGLLERMESE 262 (404)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~ 262 (404)
+..+|..+...+...|++++|+..|++..+.+ +.+...|..+..+|.+.| ++++|+..|++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34566777777777777777777777777665 556667777777777777 577777777766543
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.92 E-value=0.023 Score=48.63 Aligned_cols=88 Identities=14% Similarity=0.056 Sum_probs=36.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCCh
Q 015590 244 CEKGNVEEAFGLLERMESEGIDAD--TVTFNILISGLRKQGKVEEGMKLLERMKGK--GCYPNSASYQEVLYGLLDKKRF 319 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~ 319 (404)
.+.|++++|...|+.+.+...... ...+-.+...|...|++++|...|+.+.+. +.......+-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334455555555555444321100 123333444444445555555555544433 1011122233333334444555
Q ss_pred hHHHHHHHHHHH
Q 015590 320 PEAKELVGRMIC 331 (404)
Q Consensus 320 ~~a~~~~~~~~~ 331 (404)
++|.++++.+.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.057 Score=46.03 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=63.8
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHH
Q 015590 195 EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKG---NVEEAFGLLERMESEGIDADTVTF 271 (404)
Q Consensus 195 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~~~~~ 271 (404)
|-|...|-.|...|...|+.+.|..-|....+.. +++...+..+..++.... ...++..+|+++...... |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 5566677777777777777777777777666543 455555555555544332 345667777777665333 45555
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 272 NILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 272 ~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55666667777777777777777766
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.90 E-value=0.023 Score=48.59 Aligned_cols=97 Identities=10% Similarity=0.107 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHH
Q 015590 269 VTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNS----ASYQEVLYGLLDKKRFPEAKELVGRMICER--MSPSFVSYK 342 (404)
Q Consensus 269 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~ 342 (404)
..|...+....+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.+.- -+.....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 44555555556679999999999999987 3443 567788889999999999999999998751 112344555
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHC
Q 015590 343 KLIHGLCNQKLVEDVDWVLKKMVQQ 367 (404)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~ 367 (404)
.+...+...|+.++|..+|+++++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5677888999999999999999854
No 204
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.56 Score=45.16 Aligned_cols=112 Identities=16% Similarity=0.069 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 015590 232 NVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLY 311 (404)
Q Consensus 232 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 311 (404)
..-+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+.+.. +.-|.-.+.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 33444555555666777777777666554 35777777777777777777766666554441 344555667
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 015590 312 GLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLK 362 (404)
Q Consensus 312 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 362 (404)
+|.+.|+.++|.+++.+... .. -...+|.+.|++.+|.++.-
T Consensus 753 ~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 77777777777777766532 11 34566667777776666543
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.74 E-value=0.4 Score=42.99 Aligned_cols=33 Identities=9% Similarity=-0.028 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 015590 335 SPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ 367 (404)
Q Consensus 335 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (404)
..|...+.+++.++.-.|+.++|.+..++|.+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 345666778888888899999999999988854
No 206
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.74 E-value=0.029 Score=41.95 Aligned_cols=27 Identities=7% Similarity=0.219 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015590 233 VRTYSTLMHGLCEKGNVEEAFGLLERM 259 (404)
Q Consensus 233 ~~~~~~li~~~~~~~~~~~A~~~~~~m 259 (404)
..++.++|.++++.|+.+....+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 445566666666666666666665544
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.73 E-value=0.21 Score=39.52 Aligned_cols=126 Identities=15% Similarity=0.103 Sum_probs=56.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC-CCChhhHHHH
Q 015590 231 PNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGC-YPNSASYQEV 309 (404)
Q Consensus 231 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~l 309 (404)
|++..--.+..+..+.|+..+|...|++...--..-|....-.+.++....+++..|...++++.+... .-++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 344444444555555555555555555544322233444444455555555555555555555544310 0012223334
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 015590 310 LYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVD 358 (404)
Q Consensus 310 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 358 (404)
...+...|+...|+..|+..... .|+...-......+.+.|+.+++.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 44455555555555555555543 333333222233344444444433
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.73 E-value=0.013 Score=39.02 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=23.7
Q ss_pred HHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015590 208 LCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMES 261 (404)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 261 (404)
|.+.+++++|.++++.+.+.+ |.+...|......+.+.|++++|...|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444443 33334444444444444444444444444443
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.69 E-value=0.41 Score=42.45 Aligned_cols=287 Identities=15% Similarity=0.070 Sum_probs=162.4
Q ss_pred CCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHH--HhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHH
Q 015590 68 LRDPISVISVLNQYSKRKDYNPNEALYTLIINKL--AQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRIS 145 (404)
Q Consensus 68 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 145 (404)
.|+-..|..+-.+..+. +..|...+-.++.+- .-.|+.+.|.+-|+.|.... .....-...+..-.++.|..+
T Consensus 97 AGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP---EtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP---ETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh---HHHHHhHHHHHHHHHhcccHH
Confidence 45666676665554321 344555444454433 34578888888888875321 011111111222223367777
Q ss_pred HHHHHHhhcccCCCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcC-CCCCHh--HHHHHHHHHH---hcCChHHHH
Q 015590 146 KAIETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLG-VEIDAC--CLNILLKGLC---ENGNLEAAF 218 (404)
Q Consensus 146 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~--~~~~li~~~~---~~g~~~~a~ 218 (404)
.|.+.-++....- |. ...+..++...+..|+|+.|+++.+.-+... +.++.. .-..|+.+-. -.-+...|.
T Consensus 172 aAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 172 AARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 7777776665432 43 3467778888888888888888887766543 233322 1112222211 112344455
Q ss_pred HHHHHchhCCCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 219 YVLDEFPKQNCEPNVRTY-STLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
..-.+..+. .||.+-- -.-..++.+.|+..++-.+++.+.+....|+. + .+..+.+.|+. +..-+++....
T Consensus 250 ~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--ALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHHHHHHHHHH
Confidence 444444333 4554332 23346778888888888888888887555543 2 22334455553 23333332222
Q ss_pred -CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHCCCCC
Q 015590 298 -GCYP-NSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCN-QKLVEDVDWVLKKMVQQGFVP 371 (404)
Q Consensus 298 -~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p 371 (404)
.++| +..+...+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.+++..+.+.++..-.|
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 2233 446666777777888888888777776655 46777788777765544 488888888888877643333
No 210
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.43 Score=42.65 Aligned_cols=85 Identities=12% Similarity=-0.041 Sum_probs=42.3
Q ss_pred HcCCCHHHHHHHHHHHhhC---CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHcCC
Q 015590 279 RKQGKVEEGMKLLERMKGK---GCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVS---YKKLIHGLCNQK 352 (404)
Q Consensus 279 ~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g 352 (404)
.+.|++..|.+.|.+.... +..|+...|.....+..+.|+.++|+.--+...+ .|..- |..-..++...+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHH
Confidence 4456666666666665543 2334444455555555556666666655555543 22221 111122334455
Q ss_pred ChHHHHHHHHHHHHC
Q 015590 353 LVEDVDWVLKKMVQQ 367 (404)
Q Consensus 353 ~~~~a~~~~~~m~~~ 367 (404)
+|++|.+-+++..+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 566666666555543
No 211
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.64 E-value=0.064 Score=39.61 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCC
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQN 228 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 228 (404)
.....+..+...|.-+...+++.++.+.+ .+++...--+..+|.+.|+..++.+++.+.-+.|
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444455555555555555555554432 4444555555555555555555555555555544
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.59 E-value=0.26 Score=38.98 Aligned_cols=133 Identities=15% Similarity=0.041 Sum_probs=79.4
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 015590 195 EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGID-ADTVTFNI 273 (404)
Q Consensus 195 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ 273 (404)
.|++..--.|.++..+.|+..+|...|++...--..-|....-.+.++....+++..|...++++.+.... -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555556667777777777777777776654333445556666666666777777777777776654210 01223444
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 015590 274 LISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 274 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 329 (404)
+.+.+...|+...|+.-|+..... .|+...-...-..+.+.|+.+++..-+.++
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 566677777777777777777665 444444333344456666665555444333
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.56 E-value=0.031 Score=49.46 Aligned_cols=286 Identities=12% Similarity=0.015 Sum_probs=131.9
Q ss_pred HHHhcCCChhHHHHHHHHHhhCCCCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHH--hccc-CCCCh-HHHHHHH
Q 015590 63 KIFSNLRDPISVISVLNQYSKRKDYNPNE----ALYTLIINKLAQAKRFDAIEDIMQRIK--VEKL-CRFSD-GFFYNVI 134 (404)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~-~~~~~-~~~~~~l 134 (404)
.-+++.|+.+..+.+|+.+++.. ..|. ..|..|..+|.-.+++++|.+++..=. .+.. ..... ...-++-
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 35788999999999999998653 2333 446667777777888899988875411 0000 00000 0111111
Q ss_pred HHHHhhcCCHHHHHHHHhhc----ccCCCC-ccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 015590 135 KIYGNMAGRISKAIETLFDM----PSYNCW-PSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLC 209 (404)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~m----~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 209 (404)
..+ +..|.+++|+-.-.+- .+.|-+ .....+..+.+.|...|.--....- .+.|-.++.++
T Consensus 103 Ntl-Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~ev~--------- 168 (639)
T KOG1130|consen 103 NTL-KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAEVT--------- 168 (639)
T ss_pred chh-hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHHHH---------
Confidence 111 2245555554332211 111100 1123344455555444321100000 00000000000
Q ss_pred hcCChHHHHHHHHHc----hhCCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHH
Q 015590 210 ENGNLEAAFYVLDEF----PKQNC-EPNVRTYSTLMHGLCEKGNVEEAFGLLERME----SEGID-ADTVTFNILISGLR 279 (404)
Q Consensus 210 ~~g~~~~a~~~~~~~----~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~----~~~~~-p~~~~~~~li~~~~ 279 (404)
..++.|.+.|.+- .+.|- -.-...|..+-+.|.-.|+++.|+..-+.-. +-|-+ .....+..+..++.
T Consensus 169 --~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 169 --SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 0112222222211 11110 0112344445555555566666655443221 11111 12234555666666
Q ss_pred cCCCHHHHHHHHHHHhh----CC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHH
Q 015590 280 KQGKVEEGMKLLERMKG----KG-CYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE-----RMSPSFVSYKKLIHGLC 349 (404)
Q Consensus 280 ~~g~~~~a~~~~~~m~~----~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~li~~~~ 349 (404)
-.|+++.|.+.|+.-.. .| -.....+.-.|...|.-..++.+|+.++.+-... ...-....+.+|..+|.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 66777777666654321 11 1123344555666666666677777766543321 11224456677777777
Q ss_pred cCCChHHHHHHHHHHHH
Q 015590 350 NQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 350 ~~g~~~~a~~~~~~m~~ 366 (404)
..|..++|+.+.+.-.+
T Consensus 327 alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLR 343 (639)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 77777777766655443
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.52 E-value=0.55 Score=42.49 Aligned_cols=146 Identities=14% Similarity=0.097 Sum_probs=101.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHchhCC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 015590 198 ACCLNILLKGLCENGNLEAAFYVLDEFPKQN-CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTF-NILI 275 (404)
Q Consensus 198 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~li 275 (404)
..+|...++.-.+..-++.|..+|-+..+.| +.+++..++++|..++. |+..-|..+|+--... .||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777887777778888888888888887 56788888888887654 6777788888764443 3454444 3456
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015590 276 SGLRKQGKVEEGMKLLERMKGKGCYPN--SASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLC 349 (404)
Q Consensus 276 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 349 (404)
..+...++-+.|..+|+....+ +..+ ...|..+|+--..-|++..+..+-++|.+. .|...+......-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 6667788888888888855443 1112 457888888888888888888887777763 555545444444444
No 215
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.51 E-value=0.03 Score=47.02 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC----------------CHHHHH
Q 015590 230 EPNVRTYSTLMHGLCEK-----GNVEEAFGLLERMESEGIDADTVTFNILISGLRKQG----------------KVEEGM 288 (404)
Q Consensus 230 ~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----------------~~~~a~ 288 (404)
..|..+|-+++..+... +.++-....++.|.+-|+.-|..+|+.|++.+-+.. +-+=+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34555565555555432 445555566666666676667777766666554321 122356
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 015590 289 KLLERMKGKGCYPNSASYQEVLYGLLDKKR 318 (404)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 318 (404)
+++++|...|+.||..+-..|+.++++.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 677777777777777777777777766554
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.48 E-value=0.021 Score=38.00 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=34.1
Q ss_pred HHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC
Q 015590 171 NLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ 227 (404)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 227 (404)
..+.+.+++++|.++++.+.... |.+...+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666666666666666654 445555666666666666666666666666554
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.42 E-value=0.17 Score=39.35 Aligned_cols=86 Identities=13% Similarity=-0.081 Sum_probs=44.0
Q ss_pred HhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 015590 209 CENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGM 288 (404)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 288 (404)
...|++++|..+|.-+.-.+ +-+..-|..|...+-..+++++|+..|......+.. |+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 34556666666665555443 233444455555555555666666665554333221 3333444445555555555555
Q ss_pred HHHHHHhh
Q 015590 289 KLLERMKG 296 (404)
Q Consensus 289 ~~~~~m~~ 296 (404)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555554
No 218
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.36 E-value=0.3 Score=45.91 Aligned_cols=162 Identities=14% Similarity=0.045 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcccCCCCh-----HHHHHHHHHHHhh---cCCHHHHHHHHhhcccCCCCccHHHHH
Q 015590 96 LIINKLAQAKRFDAIEDIMQRIKVEKLCRFSD-----GFFYNVIKIYGNM---AGRISKAIETLFDMPSYNCWPSVKTFN 167 (404)
Q Consensus 96 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~ 167 (404)
.++...+=.||-+.+.+.+....+.+....+- ..++..+..++.. ..+.+.|.++++.+.+.= |+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence 44455555556666666655544332111110 1122233333332 455666666666666542 5555443
Q ss_pred HH-HHHHHhcCcHhHHHHHHHHHHHcC---CCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHH-
Q 015590 168 LV-LNLLVSAKLYGEIQGIYTSAAKLG---VEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG- 242 (404)
Q Consensus 168 ~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 242 (404)
.. .+.+...|++++|++.|+...... -+.....+--+.-.+.-.++|++|...|..+.+.+ .-+...|.-+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 32 344555667777777776544211 01222334445555666677777777777776654 3344444443332
Q ss_pred HHHcCCH-------HHHHHHHHHHH
Q 015590 243 LCEKGNV-------EEAFGLLERME 260 (404)
Q Consensus 243 ~~~~~~~-------~~A~~~~~~m~ 260 (404)
+...|+. ++|..+|.+..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 3345555 77777777664
No 219
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.32 E-value=0.09 Score=44.31 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHc-----CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----------------CChhHHHH
Q 015590 266 ADTVTFNILISGLRK-----QGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDK----------------KRFPEAKE 324 (404)
Q Consensus 266 p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~a~~ 324 (404)
-|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+- .+-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 366666666666543 466777778888999999999999999999887553 23456899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHH
Q 015590 325 LVGRMICERMSPSFVSYKKLIHGLCNQKLV-EDVDWVLKKMVQ 366 (404)
Q Consensus 325 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 366 (404)
++++|...|+.||..+-..+++++.+.+.. .+..++.--|-+
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 999999999999999999999999998863 445555444444
No 220
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.31 E-value=0.67 Score=40.54 Aligned_cols=130 Identities=12% Similarity=0.149 Sum_probs=80.2
Q ss_pred hHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHcCCC-
Q 015590 214 LEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE--KG----NVEEAFGLLERMESEGI---DADTVTFNILISGLRKQGK- 283 (404)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~- 283 (404)
+++...+++.|.+.|...+..+|-+....... .. ...+|..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566777888888888777666653333322 22 24568888888888754 3455666666554 3333
Q ss_pred ---HHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015590 284 ---VEEGMKLLERMKGKGCYPNS--ASYQEVLYGLLDKKR--FPEAKELVGRMICERMSPSFVSYKKLI 345 (404)
Q Consensus 284 ---~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~li 345 (404)
.+.++.+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 35677888888887665543 333333333322222 447788888888888888777776554
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.23 E-value=0.83 Score=43.32 Aligned_cols=87 Identities=10% Similarity=0.125 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH------
Q 015590 267 DTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVS------ 340 (404)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~------ 340 (404)
+..+...+...+-+...+.-|-++|..|-+. ..+++.....++|++|..+-+...+ ..||...
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHh
Confidence 4455555555566677788888999888744 3467778889999999999887765 3444321
Q ss_pred -----HHHHHHHHHcCCChHHHHHHHHHH
Q 015590 341 -----YKKLIHGLCNQKLVEDVDWVLKKM 364 (404)
Q Consensus 341 -----~~~li~~~~~~g~~~~a~~~~~~m 364 (404)
|.-.-.+|.+.|+-.+|.++++++
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 222234566666666666666655
No 222
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.18 E-value=0.77 Score=39.95 Aligned_cols=62 Identities=11% Similarity=-0.017 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCcHh---HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC
Q 015590 165 TFNLVLNLLVSAKLYG---EIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ 227 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 227 (404)
++..++.++...+..+ +|..+.+.+.... +-...++-.-+..+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455556665555433 4444555554332 222344444555555566666666666666654
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.14 E-value=0.015 Score=39.35 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 305 SYQEVLYGLLDKKRFPEAKELVGRMICE--RMS---PS-FVSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 305 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~---p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
+++.+...|...|++++|++.+++..+. ... |+ ..++..+..+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555666666666665555432 011 11 2345555556666666666666665543
No 224
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.05 E-value=0.47 Score=36.33 Aligned_cols=83 Identities=19% Similarity=0.115 Sum_probs=34.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 015590 239 LMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKR 318 (404)
Q Consensus 239 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 318 (404)
++..+.+.+.......+++.+...+. .+....+.++..|++.+ ..+....++. . .+.......+..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcCc
Confidence 34444444445555555554444432 24444444555544432 2222222221 0 122223334445555555
Q ss_pred hhHHHHHHHHH
Q 015590 319 FPEAKELVGRM 329 (404)
Q Consensus 319 ~~~a~~~~~~~ 329 (404)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555444
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.98 E-value=0.025 Score=38.24 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 015590 235 TYSTLMHGLCEKGNVEEAFGLLERM 259 (404)
Q Consensus 235 ~~~~li~~~~~~~~~~~A~~~~~~m 259 (404)
+|+.+...|...|++++|+..|++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443
No 226
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.94 E-value=0.39 Score=44.62 Aligned_cols=131 Identities=17% Similarity=0.125 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHH
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLC 244 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 244 (404)
..+.+++-+.+.|..+.|+++-.+-. .-.+...++|+++.|.++.++.. +...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~------~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD------DPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS------THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC------cHHHHHHHHHHHH
Confidence 45556666666666666665543221 23344555666666665543332 4456666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 015590 245 EKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKE 324 (404)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 324 (404)
+.|+++-|...|.+.. -|..|+--|.-.|+.+.-.++.+.....| -++....++.-.|+.+++.+
T Consensus 359 ~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 6666666666665543 23444445555666666666555555443 13334444444556655555
Q ss_pred HHHH
Q 015590 325 LVGR 328 (404)
Q Consensus 325 ~~~~ 328 (404)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=95.91 E-value=0.27 Score=38.25 Aligned_cols=93 Identities=13% Similarity=-0.018 Sum_probs=55.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 015590 131 YNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCE 210 (404)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 210 (404)
+..-..++. .|++++|..+|.-+.-.+. -+..-|..|..++-..+++++|...|......+ .-|...+-....+|..
T Consensus 41 Y~~Ay~~y~-~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 41 YAHAYEFYN-QGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHH
Confidence 334444444 6777777777776655431 234445556666666677777777776665544 2344444455666667
Q ss_pred cCChHHHHHHHHHchh
Q 015590 211 NGNLEAAFYVLDEFPK 226 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~ 226 (404)
.|+.+.|...|+...+
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 7777777777766665
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.86 Score=39.67 Aligned_cols=151 Identities=11% Similarity=-0.006 Sum_probs=95.6
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc---CCCCCHhHHHHHHHHHHhcCChHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL---GVEIDACCLNILLKGLCENGNLEAA 217 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~a 217 (404)
.|+..+|-..++++.+. .+.|...+...=++|.-.|+...-...++.+... ++|..+.+-..+.-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 57777777777777654 3456667777777788888877777777777643 3333344445555566678888888
Q ss_pred HHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 015590 218 FYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE---GIDADTVTFNILISGLRKQGKVEEGMKLLER 293 (404)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 293 (404)
++.-++..+.+ +.|.-+-.+....+-.+|+..++.+...+-... +--.-...|=...-.+...+.++.|+++|+.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88888777666 566666667777777788888877765543221 0000112222233334455778888888764
No 229
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.85 E-value=1.1 Score=39.14 Aligned_cols=127 Identities=11% Similarity=0.110 Sum_probs=55.6
Q ss_pred HHHHHHhhcccCCCCccHHHHHHHHHHHHh--cC----cHhHHHHHHHHHHHcCC---CCCHhHHHHHHHHHHhcCC---
Q 015590 146 KAIETLFDMPSYNCWPSVKTFNLVLNLLVS--AK----LYGEIQGIYTSAAKLGV---EIDACCLNILLKGLCENGN--- 213 (404)
Q Consensus 146 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~--- 213 (404)
+.+.+++.|.+.|++.+..+|-+..-.... .. ...++..+|+.|++... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555666666666655554442222222 11 23456666666665531 2333444444333 2222
Q ss_pred -hHHHHHHHHHchhCCCCCcHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015590 214 -LEAAFYVLDEFPKQNCEPNVR--TYSTLMHGLCEKGN--VEEAFGLLERMESEGIDADTVTFNIL 274 (404)
Q Consensus 214 -~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~l 274 (404)
.+.++..|+.+.+.|+..+-. ..+.++........ ..++.++++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 234455555555555443322 11222221111111 23455555555555555555544433
No 230
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.79 E-value=1.3 Score=45.01 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHH
Q 015590 235 TYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSA--SYQEVLYG 312 (404)
Q Consensus 235 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~ 312 (404)
.|.+..+.+.+...+++|.-.|+..-+. .-.+.+|..+|+|.+|..+...+.... +.. +-..|+.-
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHH
Confidence 3444444455566677776666554321 124566677777777777777665431 211 12456666
Q ss_pred HHhcCChhHHHHHHHHHH
Q 015590 313 LLDKKRFPEAKELVGRMI 330 (404)
Q Consensus 313 ~~~~g~~~~a~~~~~~~~ 330 (404)
+...++.-+|-++..+..
T Consensus 1009 L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHcccchhHHHHHHHHh
Confidence 667777777777766664
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.67 E-value=0.51 Score=43.12 Aligned_cols=65 Identities=9% Similarity=-0.096 Sum_probs=54.5
Q ss_pred ccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHchhC
Q 015590 161 PSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDA----CCLNILLKGLCENGNLEAAFYVLDEFPKQ 227 (404)
Q Consensus 161 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 227 (404)
.+...|+.+..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|...+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356688999999999999999999999988774 442 45888999999999999999999988864
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.66 E-value=0.29 Score=44.58 Aligned_cols=66 Identities=17% Similarity=0.060 Sum_probs=49.6
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 195 EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNV----RTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 195 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
+.+...++.+..+|.+.|++++|...|++..+.+ |+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456777888888888888888888888877663 442 35777888888888888888888887764
No 233
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.53 E-value=2.5 Score=40.74 Aligned_cols=191 Identities=15% Similarity=0.141 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHH-----
Q 015590 163 VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYS----- 237 (404)
Q Consensus 163 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----- 237 (404)
......+...+.+.|.-++|.+.|-+ .+ .|. .-+..|....+|.+|.++-+... -|.+.+.-
T Consensus 852 s~llp~~a~mf~svGMC~qAV~a~Lr---~s-~pk-----aAv~tCv~LnQW~~avelaq~~~----l~qv~tliak~aa 918 (1189)
T KOG2041|consen 852 SELLPVMADMFTSVGMCDQAVEAYLR---RS-LPK-----AAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAKQAA 918 (1189)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHh---cc-CcH-----HHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHH
Confidence 33445555666666666666655532 22 111 23455666667777766665543 23332221
Q ss_pred ---------HHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHH----HHHHHH-HHH----------HcCCCHHHHHH
Q 015590 238 ---------TLMHGLCEKGNVEEAFGLLERMES----EGIDADTV----TFNILI-SGL----------RKQGKVEEGMK 289 (404)
Q Consensus 238 ---------~li~~~~~~~~~~~A~~~~~~m~~----~~~~p~~~----~~~~li-~~~----------~~~g~~~~a~~ 289 (404)
--|..+.+.|+.-+|-+++.+|.+ ++.+|-.. ...+++ .-+ -+.|..++|..
T Consensus 919 qll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~ 998 (1189)
T KOG2041|consen 919 QLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD 998 (1189)
T ss_pred HHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh
Confidence 123455666776677777777754 33333221 112211 111 12455666666
Q ss_pred HHHHHhhCC---C----CCChhhH--HHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCChHHHHH
Q 015590 290 LLERMKGKG---C----YPNSASY--QEVLYGLLDKKRFPEAKELVGRMICE-RMSPSFVSYKKLIHGLCNQKLVEDVDW 359 (404)
Q Consensus 290 ~~~~m~~~~---~----~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~ 359 (404)
+++...-.. + --....| -.|..--...|.++.|++.--.+.+- .+-|....|..+.-+-+....+...-+
T Consensus 999 lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSK 1078 (1189)
T KOG2041|consen 999 LLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSK 1078 (1189)
T ss_pred hhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHH
Confidence 554332110 0 0112333 34444445568888887765554432 356767777766544444444544444
Q ss_pred HHHHHHH
Q 015590 360 VLKKMVQ 366 (404)
Q Consensus 360 ~~~~m~~ 366 (404)
.|-++..
T Consensus 1079 AfmkLe~ 1085 (1189)
T KOG2041|consen 1079 AFMKLEA 1085 (1189)
T ss_pred HHHHHHh
Confidence 4544443
No 234
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.43 E-value=0.86 Score=34.85 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=22.4
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 015590 168 LVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCEN 211 (404)
Q Consensus 168 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 211 (404)
.++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44444544555555555555555544 24445555555555543
No 235
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.42 E-value=0.22 Score=42.68 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=65.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 015590 198 ACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMES-----EGIDADTVTFN 272 (404)
Q Consensus 198 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~~ 272 (404)
..++..++..+..+|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+++.. .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3466778888899999999999999998876 77889999999999999999999999988865 47888777666
Q ss_pred HHHHH
Q 015590 273 ILISG 277 (404)
Q Consensus 273 ~li~~ 277 (404)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55544
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.30 E-value=0.3 Score=45.34 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=99.2
Q ss_pred HHHHhcCcHhHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCH
Q 015590 171 NLLVSAKLYGEIQGIYTSAA-KLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNV 249 (404)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 249 (404)
....-.++++.+.++.+.-. -..+ +....+.++..+-+.|-.+.|+.+-.+ .. .-.....+.|+.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence 33445677887777665111 1122 244577888888888888888877332 21 223455678888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 015590 250 EEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 250 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 329 (404)
+.|.++-++. .+...|..|.......|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 8887765443 3677888888888888999888888876652 455666677788888777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 015590 330 ICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKM 364 (404)
Q Consensus 330 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (404)
...|- ++....++.-.|+.++..+++.+-
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 76552 555666677778888888777653
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.14 E-value=2.4 Score=38.23 Aligned_cols=163 Identities=14% Similarity=0.045 Sum_probs=86.9
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHcC---CCCCHhHHHHHHHHHHh---cCChHHHHHHHHHchhCCCCCcHHHHHHHHH
Q 015590 168 LVLNLLVSAKLYGEIQGIYTSAAKLG---VEIDACCLNILLKGLCE---NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMH 241 (404)
Q Consensus 168 ~ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 241 (404)
.++-+|....+++..+++.+.+.... +.....+-....-++.+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445666667777777777666541 11122222233444555 6677777777766433333566666666655
Q ss_pred HHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC----HHHHHHHH---H-HHhhCCCC---C
Q 015590 242 GLCE---------KGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGK----VEEGMKLL---E-RMKGKGCY---P 301 (404)
Q Consensus 242 ~~~~---------~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----~~~a~~~~---~-~m~~~~~~---p 301 (404)
.|-. ....++|+..|.+.-+. .||..+=-.+...+...|. ..+..++- . ...+.|.. .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5432 11366777777766544 2443332222222222232 11222222 1 22233322 2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 302 NSASYQEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
+--.+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3334567788888899999999999999875
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=1.6 Score=36.30 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=59.8
Q ss_pred HcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CCCCCh-hhHHHHHHHHH
Q 015590 245 EKGNVEEAFGLLERMESE---GI--DADTVTFNILISGLRKQGKVEEGMKLLERMKGK----GCYPNS-ASYQEVLYGLL 314 (404)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~---~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~ 314 (404)
.+-++++|+++|++...- +- +.-...+...-+.+.+...+++|-..+.+-... .-.++. ..|...|-.+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 445666666666654321 10 011223444555666666666666555443221 111222 22444555566
Q ss_pred hcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 015590 315 DKKRFPEAKELVGRMICER---MSPSFVSYKKLIHGLCNQKLVEDVDWVLK 362 (404)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 362 (404)
...++..|.+.++.--..+ -.-+..+...|+.+|- .|+.+++.+++.
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 6667777777777643321 1234556666776664 556666555543
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.05 E-value=0.82 Score=34.72 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=21.8
Q ss_pred hcCcHhHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC
Q 015590 175 SAKLYGEIQGIYTSAAKLG--VEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ 227 (404)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 227 (404)
+.|++++|.+.|+.+...- -+-...+--.++.+|.+.|++++|...+++..+.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4444444444444444331 0111223333444444444444444444444443
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.04 E-value=1.8 Score=36.36 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=22.8
Q ss_pred hcCcHhHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHchh
Q 015590 175 SAKLYGEIQGIYTSAAKLG--VEIDACCLNILLKGLCENGNLEAAFYVLDEFPK 226 (404)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 226 (404)
+.|++++|.+.|+.+.... -+-...+--.++-++.+.++++.|...+++...
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4455555555555544331 011223333344444455555555555554443
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=95.03 E-value=2.1 Score=39.30 Aligned_cols=148 Identities=10% Similarity=0.053 Sum_probs=87.6
Q ss_pred CHHHHHHHHhhccc-CCCCccH-HHHHHHHHHHHh---------cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 015590 143 RISKAIETLFDMPS-YNCWPSV-KTFNLVLNLLVS---------AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCEN 211 (404)
Q Consensus 143 ~~~~A~~~~~~m~~-~~~~p~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 211 (404)
..+.|+.+|.+... ..+.|+- ..|..+..++.. ..+..+|.++-+...+.+ +.|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 45678888888872 1233543 334333322211 224456677777777766 66777777777777777
Q ss_pred CChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHcCCCHHHHHHH
Q 015590 212 GNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGID-ADTVTFNILISGLRKQGKVEEGMKL 290 (404)
Q Consensus 212 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~ 290 (404)
++++.|..+|++....+ +....+|........-+|+.++|.+.+++..+..+. .........+..|+..+ .+.|..+
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 77888888888877764 444555665566666778888888888875544211 11122223344555544 5566666
Q ss_pred HHH
Q 015590 291 LER 293 (404)
Q Consensus 291 ~~~ 293 (404)
|-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 544
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.02 E-value=2.5 Score=39.89 Aligned_cols=161 Identities=21% Similarity=0.181 Sum_probs=104.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHchhCC-CCCc-----HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 015590 203 ILLKGLCENGNLEAAFYVLDEFPKQN-CEPN-----VRTYSTLMHGLCE----KGNVEEAFGLLERMESEGIDADTVTFN 272 (404)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~-----~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 272 (404)
.++...+=.||=+.+++.+.+..+.+ +.-. ...|..++..++. ....+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 45555556688888888877765532 2111 1234444444443 34678899999999887 57776665
Q ss_pred HH-HHHHHcCCCHHHHHHHHHHHhhCCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 015590 273 IL-ISGLRKQGKVEEGMKLLERMKGKGC---YPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIH-G 347 (404)
Q Consensus 273 ~l-i~~~~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~-~ 347 (404)
.. .+.+...|++++|.+.|++...... ......+--+...+.-.++|++|.+.|..+.+.. ..+..+|.-+.. +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 44 4556778999999999997664211 1223445556666777899999999999998753 445556655543 3
Q ss_pred HHcCCCh-------HHHHHHHHHHHH
Q 015590 348 LCNQKLV-------EDVDWVLKKMVQ 366 (404)
Q Consensus 348 ~~~~g~~-------~~a~~~~~~m~~ 366 (404)
+...|+. ++|.++|.+...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4456777 888888877653
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=2 Score=36.83 Aligned_cols=145 Identities=18% Similarity=0.185 Sum_probs=85.6
Q ss_pred HHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHH
Q 015590 171 NLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVE 250 (404)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 250 (404)
......|++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+...--........+-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34556778888888888777664 33455666777888888888888888888765421222222223344444554444
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChh
Q 015590 251 EAFGLLERMESEGIDA-DTVTFNILISGLRKQGKVEEGMKLLERMKGK--GCYPNSASYQEVLYGLLDKKRFP 320 (404)
Q Consensus 251 ~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~ 320 (404)
+...+-.+.... | |...-..+...+...|+.+.|.+.+-.+.++ |.. |...-..++..+.--|.-+
T Consensus 221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 444444444432 3 4444555666677777777777766665544 322 4455566666665555333
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.99 E-value=0.51 Score=39.88 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-CCCCC-hhhHHHHH
Q 015590 235 TYSTLMHGLCEKGNVEEAFGLLERMESEGIDA--DTVTFNILISGLRKQGKVEEGMKLLERMKGK-GCYPN-SASYQEVL 310 (404)
Q Consensus 235 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~li 310 (404)
.|+.-+.. .+.|++.+|...|....+....- ....+--|...+...|++++|..+|..+.+. +-.|. +..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555544 34555777777777766653220 1122233566666666666666666666654 11111 24455555
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 015590 311 YGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 311 ~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5566666666666666666654
No 245
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.98 E-value=1.4 Score=34.64 Aligned_cols=138 Identities=9% Similarity=-0.029 Sum_probs=73.5
Q ss_pred CCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHH
Q 015590 53 KDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNE-ALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFY 131 (404)
Q Consensus 53 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 131 (404)
.+...|...+. +++.+.+++|+.-|..+. ..|...-+ -.........+..|+-..|...|+++......|.......
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~le-ktg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLE-KTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 33444544443 355677788888888774 33333221 1222333445667777777777777754432221111222
Q ss_pred HHHHHHH-hhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc
Q 015590 132 NVIKIYG-NMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL 192 (404)
Q Consensus 132 ~~l~~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 192 (404)
.+-..|. ..+|.++......+-+...+-+.....-..|.-+-.+.|++.+|.+.|.++...
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 2222221 126777777766666655443333334455555566777777777777766654
No 246
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=1.8 Score=38.80 Aligned_cols=96 Identities=14% Similarity=0.005 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
.++..+.-++.+.+++..|++.-+..+..+ ++|+...---..+|...|+++.|+..|+.+.+.. |-|-..-+.++..-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 456667777888888888888888888776 6677777777788888888888888888887763 33434444444443
Q ss_pred HHcCCH-HHHHHHHHHHHH
Q 015590 244 CEKGNV-EEAFGLLERMES 261 (404)
Q Consensus 244 ~~~~~~-~~A~~~~~~m~~ 261 (404)
-+.... +...++|..|-.
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 333333 233556666643
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=1 Score=39.28 Aligned_cols=154 Identities=14% Similarity=0.066 Sum_probs=95.4
Q ss_pred hcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC---CCCCcHHHHHHHHHHHHHcCCHHH
Q 015590 175 SAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ---NCEPNVRTYSTLMHGLCEKGNVEE 251 (404)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~ 251 (404)
..|...+|-..++++.+. .|.|...+...=++|.-.|+.+.-...++.+... ++|.....-....-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456666666677777665 3677777777778888888888777777776543 222222223344455667788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC---CCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 015590 252 AFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK---GCYPNSASYQEVLYGLLDKKRFPEAKELVGR 328 (404)
Q Consensus 252 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (404)
|++.-++..+-+.. |.-.-.++...+...|+..++.++..+-... +-..-..-|....-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88777776655322 4445556666666778888887776655443 1111223344444445566778888888865
Q ss_pred HH
Q 015590 329 MI 330 (404)
Q Consensus 329 ~~ 330 (404)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
No 248
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.70 E-value=1.6 Score=34.21 Aligned_cols=123 Identities=12% Similarity=0.122 Sum_probs=49.9
Q ss_pred HhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHH-HHHHHH--HHHHhcCc
Q 015590 102 AQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVK-TFNLVL--NLLVSAKL 178 (404)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll--~~~~~~~~ 178 (404)
++.+..++|..-|..+.+.+....+.......-.... +.|+...|...|++.-.....|-.. -...|= -.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a-~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLA-QKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-hcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 4445555555555555544432222211111111122 2555555555555554432112111 000010 11233445
Q ss_pred HhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHch
Q 015590 179 YGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFP 225 (404)
Q Consensus 179 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 225 (404)
++++....+-+-..+-+.-...-..|.-+-.+.|++.+|..+|..+.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 55554444444433333333333444444445555555555555443
No 249
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.70 E-value=2.7 Score=36.62 Aligned_cols=188 Identities=15% Similarity=0.063 Sum_probs=101.6
Q ss_pred hcC-cHhHHHHHHHHHHHc--------CCCCC-----HhHHHHHHHHHHhcCChH---HHHHHHHHchhCCCCCcHHHHH
Q 015590 175 SAK-LYGEIQGIYTSAAKL--------GVEID-----ACCLNILLKGLCENGNLE---AAFYVLDEFPKQNCEPNVRTYS 237 (404)
Q Consensus 175 ~~~-~~~~a~~~~~~~~~~--------g~~~~-----~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~ 237 (404)
+.+ +++.|..++++..+. ...++ ..+...++.+|...+..+ +|.++++.+.... +-....+-
T Consensus 47 ~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~ 125 (278)
T PF08631_consen 47 SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFL 125 (278)
T ss_pred HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHH
Confidence 344 666666665554332 11222 346677888888887754 5566666665442 22345555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HcCCCHHHHHHHHHHHhhCCCCCChhhHH--HHHH-
Q 015590 238 TLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGL---RKQGKVEEGMKLLERMKGKGCYPNSASYQ--EVLY- 311 (404)
Q Consensus 238 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~- 311 (404)
.-+..+.+.++.+++.+++.+|...-.. ....+...+..+ .... ...+...+..+....+.|....|. .++.
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~ 203 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTR 203 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 6667777789999999999999876221 334455444444 3333 455666666666554444443111 1111
Q ss_pred --HHHhcCC------hhHHHHHHHHHHHC-CCCCCHHHHHHHH-------HHHHcCCChHHHHHHHHHHH
Q 015590 312 --GLLDKKR------FPEAKELVGRMICE-RMSPSFVSYKKLI-------HGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 312 --~~~~~g~------~~~a~~~~~~~~~~-~~~p~~~~~~~li-------~~~~~~g~~~~a~~~~~~m~ 365 (404)
...+.++ .+...++++...+. +.+.+..+-.++. ..+.+.+++++|.+.|+--.
T Consensus 204 ~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 204 VLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1122222 34444444433322 3334444433322 23556788999998887543
No 250
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.58 E-value=1.8 Score=34.09 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=45.3
Q ss_pred HHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC
Q 015590 221 LDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCY 300 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 300 (404)
+..+.+.+++|+...|..+++.+.+.|++.. +..+...++-+|.......+-.+. +....+.++--+|..+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH---
Confidence 3334445555555566666666666655443 233334444444444433332222 1223333443334333
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 015590 301 PNSASYQEVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 301 p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 329 (404)
=...+..++..+...|++-+|+++.+..
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0113344455555666666666665554
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.48 E-value=1.2 Score=33.81 Aligned_cols=54 Identities=28% Similarity=0.220 Sum_probs=25.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 244 CEKGNVEEAFGLLERMESEGID--ADTVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
.+.|++++|.+.|+.+..+-.. -....--.++.+|.+.|++++|...+++..+.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445555555555555443111 11223334455555555555555555555444
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.47 E-value=2.3 Score=34.95 Aligned_cols=200 Identities=21% Similarity=0.111 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHH-
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKL-GVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMH- 241 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~- 241 (404)
..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444555555555555555544431 123334444445555555555555555555554432111 111222222
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 015590 242 GLCEKGNVEEAFGLLERMESEGI--DADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRF 319 (404)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 319 (404)
.+...|+++.|...|.+...... ......+......+...++.+.+...+..............+..+...+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45566666666666666533211 0122223333333455566666666666666552111244555556666666666
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 320 PEAKELVGRMICERMSPS-FVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 320 ~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
+.|...+...... .|+ ...+..+...+...|..+++...+....+
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666653 232 33333333334455556666666666653
No 253
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.6 Score=40.19 Aligned_cols=106 Identities=13% Similarity=0.136 Sum_probs=76.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCC-ChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHH
Q 015590 86 DYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRF-SDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVK 164 (404)
Q Consensus 86 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 164 (404)
|.+.+..+...++..-....+++.+...+-.++....... +....+ .+...+. .-++++++-++..=...|+-||-.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4455556666666666667788888888887765431111 112222 3334444 567889999999999999999999
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcC
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLG 193 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 193 (404)
+++.+|+.+.+.+++.+|.++...|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999888887654
No 254
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.28 E-value=3.8 Score=36.69 Aligned_cols=290 Identities=12% Similarity=0.084 Sum_probs=179.8
Q ss_pred ChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHH--HhcCCchHHHHHHHHHHhcccCCCChHHHHHHH-HHHHhhcCCHHH
Q 015590 70 DPISVISVLNQYSKRKDYNPNEALYTLIINKL--AQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVI-KIYGNMAGRISK 146 (404)
Q Consensus 70 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~ 146 (404)
.|..+...|..-.+..| |..|-..+ +..|+-..|.++-.+..+. ...+......++ .......|+++.
T Consensus 68 sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~ 138 (531)
T COG3898 68 SPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYED 138 (531)
T ss_pred CcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHH
Confidence 46677777777755444 33444333 3567888888887765322 111222222222 222223899999
Q ss_pred HHHHHhhcccCCCCccHH--HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHc
Q 015590 147 AIETLFDMPSYNCWPSVK--TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEF 224 (404)
Q Consensus 147 A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 224 (404)
|.+-|+.|... |... -...|.-...+.|+.+.|.++-+..-... +--.-.+...+...+..|+|+.|+++.+.-
T Consensus 139 Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 139 ARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99999999873 4332 23334444567889999998888876653 334567788999999999999999999876
Q ss_pred hhCC-CCCcHHH--HHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 225 PKQN-CEPNVRT--YSTLMHGLCE---KGNVEEAFGLLERMESEGIDADTVTF-NILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 225 ~~~~-~~~~~~~--~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
.+.. +.+++.- -..|+.+-.. .-+...|...-.+..+ +.||.+.- ..-..++.+.|+..++-.+++.+-+.
T Consensus 215 ~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 215 RAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 5432 3444432 2233332211 2245555554444333 35554432 33457789999999999999999988
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHh
Q 015590 298 GCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE-RMSP-SFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGM 375 (404)
Q Consensus 298 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 375 (404)
. |.+..+... .+.+.|+ .+..-+++..+. .++| +...-..+..+-...|++..|+.--+... ...|....
T Consensus 293 e--PHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--r~~pres~ 364 (531)
T COG3898 293 E--PHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA--REAPRESA 364 (531)
T ss_pred C--CChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh--hhCchhhH
Confidence 4 444444322 2445554 444444443322 2445 45666777888889999988888777766 57788877
Q ss_pred HHHHHHh
Q 015590 376 WREIVGC 382 (404)
Q Consensus 376 ~~~ll~~ 382 (404)
|..|-+.
T Consensus 365 ~lLlAdI 371 (531)
T COG3898 365 YLLLADI 371 (531)
T ss_pred HHHHHHH
Confidence 7766653
No 255
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=4 Score=36.84 Aligned_cols=165 Identities=16% Similarity=0.044 Sum_probs=105.7
Q ss_pred CCHHHHHHHH-HHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHH
Q 015590 89 PNEALYTLII-NKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFN 167 (404)
Q Consensus 89 p~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 167 (404)
|...+|..+- .++.-.|+.++|.++--.+.+.+.... ...+..-...|+ .++.+.|...|++-+..+ |+...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~-~al~vrg~~~yy--~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA-EALYVRGLCLYY--NDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh-HHHHhccccccc--ccchHHHHHHHhhhhccC--hhhhhHH
Confidence 4445555443 355677899999888877765541111 111222222222 789999999999988866 6543322
Q ss_pred HH-------------HHHHHhcCcHhHHHHHHHHHHHcC---CCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCC
Q 015590 168 LV-------------LNLLVSAKLYGEIQGIYTSAAKLG---VEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEP 231 (404)
Q Consensus 168 ~l-------------l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 231 (404)
.+ .+-..+.|.+.+|.+.|.+.+... ..++...|........+.|+.++|..--+...+.
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---- 316 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---- 316 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----
Confidence 11 233467888999999999888653 4556667777778888889999988877776643
Q ss_pred cHH-H--HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 232 NVR-T--YSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 232 ~~~-~--~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
|.. . |-.-..++...++|++|.+-|++..+.
T Consensus 317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 322 2 222233455567888888888877665
No 256
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.22 E-value=0.33 Score=43.29 Aligned_cols=130 Identities=10% Similarity=-0.028 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHh----hCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHH----CC-CCCCH
Q 015590 269 VTFNILISGLRKQGKVEEGMKLLERMK----GKGCY-PNSASYQEVLYGLLDKKRFPEAKELVGRMIC----ER-MSPSF 338 (404)
Q Consensus 269 ~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~-~~p~~ 338 (404)
..|..|-..|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.+..... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456777777777899999887665422 22311 1235677788888889999999999876542 22 22345
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHC-----CCCCCHHhHHHHHHhhccCCCCcchhhHHHh
Q 015590 339 VSYKKLIHGLCNQKLVEDVDWVLKKMVQQ-----GFVPRMGMWREIVGCVTFGKDNRNRVYVTET 398 (404)
Q Consensus 339 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 398 (404)
.+..+|.+.|.-..++++|+.++++-... +..-....+.+|-.++..-+..+.+.++.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 66777888888888999999988764321 2223345677777777766666666655543
No 257
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=1.3 Score=39.74 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=52.9
Q ss_pred HHHHhcCcHhHHHHHHHHHHHc-----CCCC---------CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHH
Q 015590 171 NLLVSAKLYGEIQGIYTSAAKL-----GVEI---------DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTY 236 (404)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~-----g~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 236 (404)
+.+.+.|++..|..-|+...+. +.++ -..++..+.-+|.+.+++..|...-+.....+ ++|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4566777777777777765432 1111 12345555566666666666666666555554 4555554
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 237 STLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 237 ~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
---..+|...|+++.|...|+++++.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44555666666666666666666654
No 258
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.15 E-value=1.8 Score=32.33 Aligned_cols=138 Identities=10% Similarity=0.159 Sum_probs=66.7
Q ss_pred cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 015590 211 NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKL 290 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 290 (404)
.|.+++..++..+.... .+..-||.+|--....-+-+-..++++..-+ -.|.. .+|+.......
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi~C 78 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVIEC 78 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHHHH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHHHH
Confidence 45666666666665542 2444455554444443333333333333322 12221 22333333333
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 015590 291 LERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFV 370 (404)
Q Consensus 291 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 370 (404)
+-.+- .+......-++.+...|+-+.-.++..++.+. -.+++...-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 79 ~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 79 YAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 32221 13344455566677777777777777777643 3566777777777777777777777777777777654
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.13 E-value=3.1 Score=35.04 Aligned_cols=52 Identities=13% Similarity=-0.015 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHhhcccCC--CCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc
Q 015590 141 AGRISKAIETLFDMPSYN--CWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL 192 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 192 (404)
.|++++|.+.|+.+.... -+-...+--.++-++-+.++++.|+...++..+.
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 455555555555554322 0011223333444445555555555555555443
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.13 E-value=0.79 Score=39.33 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015590 270 TFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMI 330 (404)
Q Consensus 270 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (404)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44455555555555555555555555443 2244555555555555555555555555444
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.09 E-value=0.99 Score=38.18 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=38.1
Q ss_pred hcCcHhHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHchhCC--CCCcHHHHHHHHHHHHHcCCH
Q 015590 175 SAKLYGEIQGIYTSAAKLGVEID---ACCLNILLKGLCENGNLEAAFYVLDEFPKQN--CEPNVRTYSTLMHGLCEKGNV 249 (404)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~ 249 (404)
+.|++..|.+.|...++.. |-+ ...+--|..++...|++++|..+|..+.+.- .+.-..+.--+.....+.|+.
T Consensus 153 ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 3444555555555554432 111 1223334455555555555555555444321 011123334444444555555
Q ss_pred HHHHHHHHHHHHC
Q 015590 250 EEAFGLLERMESE 262 (404)
Q Consensus 250 ~~A~~~~~~m~~~ 262 (404)
++|-..|+++.+.
T Consensus 232 d~A~atl~qv~k~ 244 (262)
T COG1729 232 DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.08 E-value=5 Score=37.26 Aligned_cols=169 Identities=11% Similarity=0.038 Sum_probs=100.8
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHH
Q 015590 59 TEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYG 138 (404)
Q Consensus 59 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (404)
..+|.-..+.++++.-++.-.++++. .||..+.-.++ +--.+....++++++++..+.+........ ...
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei---~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~---~~~--- 241 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEI---NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLGKSQ---FLQ--- 241 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh---hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhchhh---hhh---
Confidence 46777777888888888887777653 45554332222 222355678899999887655411100000 000
Q ss_pred hhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhcCChHHH
Q 015590 139 NMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVE-IDACCLNILLKGLCENGNLEAA 217 (404)
Q Consensus 139 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a 217 (404)
. .|. .++.....+..|-..+=..+..++.+.|+.++|++.+++|.+..-. ....+...|+.++...+.+.++
T Consensus 242 ~-~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 242 H-HGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred c-ccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence 0 111 1111222222222333345666777899999999999999875322 2455778899999999999999
Q ss_pred HHHHHHchhCCCCCc-HHHHHHHHHHHH
Q 015590 218 FYVLDEFPKQNCEPN-VRTYSTLMHGLC 244 (404)
Q Consensus 218 ~~~~~~~~~~~~~~~-~~~~~~li~~~~ 244 (404)
..++.+-.+...+.+ ...|+..+--+.
T Consensus 315 q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 315 QALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 999998765443332 345666554333
No 263
>PRK11906 transcriptional regulator; Provisional
Probab=94.05 E-value=4.9 Score=37.06 Aligned_cols=161 Identities=9% Similarity=0.066 Sum_probs=81.2
Q ss_pred CCH--HHHHHHHhcCC-----ChhHHHHHHHHHhhCCCCCCCH-HHHHHHHHHHHh---------cCCchHHHHHHHHHH
Q 015590 56 LSP--TEVLKIFSNLR-----DPISVISVLNQYSKRKDYNPNE-ALYTLIINKLAQ---------AKRFDAIEDIMQRIK 118 (404)
Q Consensus 56 ~~~--~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~---------~~~~~~a~~~~~~~~ 118 (404)
..| ...+++..... +.+.|+.+|.++.......|+- ..|..+..++.. ..+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 55666555522 3467888888887444455553 344433332221 122344555555555
Q ss_pred hcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccH-HHHHHHHHHHHhcCcHhHHHHHHHHHHHcC-CCC
Q 015590 119 VEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSV-KTFNLVLNLLVSAKLYGEIQGIYTSAAKLG-VEI 196 (404)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~ 196 (404)
+.+ +.+......+.......++++.|..+|++....+ ||. .+|....-.+.-.|+.++|.+.+++..+.. ...
T Consensus 332 eld---~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 332 DIT---TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred hcC---CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 443 3333333332222222556777777777766644 543 355555555556677777777777655442 111
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHH
Q 015590 197 DACCLNILLKGLCENGNLEAAFYVLD 222 (404)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~a~~~~~ 222 (404)
-..+....++.|+..+ ++.|.+++-
T Consensus 407 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 407 KAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 2233334444555443 455555443
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.04 E-value=0.19 Score=29.48 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=8.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 015590 240 MHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 240 i~~~~~~~~~~~A~~~~~~m~ 260 (404)
...|.+.|++++|.++|++..
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333333333333333333333
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.88 E-value=0.32 Score=28.49 Aligned_cols=27 Identities=15% Similarity=0.007 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHchhC
Q 015590 201 LNILLKGLCENGNLEAAFYVLDEFPKQ 227 (404)
Q Consensus 201 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 227 (404)
+..+...|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555555555544
No 266
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.72 E-value=2.6 Score=32.77 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=8.6
Q ss_pred cCCHHHHHHHHhhccc
Q 015590 141 AGRISKAIETLFDMPS 156 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~ 156 (404)
.|++.+|..+|+++..
T Consensus 57 r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 57 RGDWDDALRLLRELEE 72 (160)
T ss_pred hCCHHHHHHHHHHHhc
Confidence 4555555555555544
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=1.5 Score=42.96 Aligned_cols=176 Identities=15% Similarity=0.147 Sum_probs=99.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHH----HHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHH
Q 015590 130 FYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNL----VLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILL 205 (404)
Q Consensus 130 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 205 (404)
..+-+...+. ...++-|+.+-+.-.. +..+... ..+-+.+.|++++|...|-+-+.. ++|. .+|
T Consensus 337 le~kL~iL~k-K~ly~~Ai~LAk~~~~-----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 337 LETKLDILFK-KNLYKVAINLAKSQHL-----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred HHHHHHHHHH-hhhHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 3344555554 5667777766655332 2223223 333445677788777777655432 1222 345
Q ss_pred HHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 015590 206 KGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVE 285 (404)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 285 (404)
.-|....++..--.+++.+.+.|+ .+...-+.|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 555666666666677777777773 455555777788888888777666665544 2221 112334555566666666
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 015590 286 EGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 286 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 329 (404)
+|..+-.+.... ......+ +-..+++++|++++..+
T Consensus 481 ~a~~LA~k~~~h-----e~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKKH-----EWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhccC-----HHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 666665544431 2222222 34457788888877766
No 268
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.27 E-value=3.1 Score=32.33 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=22.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 245 EKGNVEEAFGLLERMESEGIDADTVTFNI-LISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
+.++.+++..++..+.-. .|....... -...+...|++.+|+++|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344555555555555443 222221111 122234455555555555555444
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.22 E-value=7.2 Score=40.13 Aligned_cols=109 Identities=20% Similarity=0.198 Sum_probs=61.5
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcccCCCCccHHH----HHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 015590 133 VIKIYGNMAGRISKAIETLFDMPSYNCWPSVKT----FNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGL 208 (404)
Q Consensus 133 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 208 (404)
-...|.++.|.+.+|+.++. |+... |.+...-+...+.+++|--.|+..-+. .--+.+|
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~ 975 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAY 975 (1265)
T ss_pred HHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHH
Confidence 33344444566666655542 44433 344444445566666666666544321 1345677
Q ss_pred HhcCChHHHHHHHHHchhCCCCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015590 209 CENGNLEAAFYVLDEFPKQNCEPNVRT--YSTLMHGLCEKGNVEEAFGLLERMES 261 (404)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~ 261 (404)
-.+|+|.+|..+..++.. ..|... --.|+.-+...+++-+|-++..+...
T Consensus 976 ~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 777788887777776653 122222 24566777777777777777666554
No 270
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=5.1 Score=34.51 Aligned_cols=122 Identities=18% Similarity=0.111 Sum_probs=59.5
Q ss_pred HHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 015590 207 GLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEE 286 (404)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 286 (404)
.....|++.+|...|+...... +-+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3445566677777666665543 333445555666677777777777777665433211111221122222333333333
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 287 GMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 287 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
...+-++.-.. +-|...-..+...+...|+.++|.+.+-.+.+
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333322 11444444555556666666666665555543
No 271
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.12 E-value=8.9 Score=37.15 Aligned_cols=180 Identities=18% Similarity=0.089 Sum_probs=106.8
Q ss_pred chHHHHHHHHHHhcccCCCChHHHHHHHH----H-HHhhcCCHHHHHHHHhhccc-------CCCCccHHHHHHHHHHHH
Q 015590 107 FDAIEDIMQRIKVEKLCRFSDGFFYNVIK----I-YGNMAGRISKAIETLFDMPS-------YNCWPSVKTFNLVLNLLV 174 (404)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~----~-~~~~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~ll~~~~ 174 (404)
...+.++++.....+. ....+.+.. . ... ..+.+.|+..|....+ .| +.....-+..+|.
T Consensus 228 ~~~a~~~~~~~a~~g~----~~a~~~~g~~y~~G~~g~-~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----SEAQYALGICYLAGTYGV-TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYL 299 (552)
T ss_pred hhHHHHHHHHHHhhcc----hHHHHHHHHHHhhccccc-cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHh
Confidence 3567788887766651 111222211 1 223 6789999999988765 44 2335566666776
Q ss_pred hcC-----cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHH--Hc
Q 015590 175 SAK-----LYGEIQGIYTSAAKLGVEIDACCLNILLKGLCE-NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLC--EK 246 (404)
Q Consensus 175 ~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~ 246 (404)
+.. +.+.|..++...-+.| .|+....-..+..... -.+...|.++|....+.| .++..-+.+++-... -.
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVE 377 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcC
Confidence 643 6677999999888887 4555444333333333 346789999999988887 344433333333222 23
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 015590 247 GNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKG 298 (404)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 298 (404)
.+.+.|..++++..+.|. |...--...+..+.. +.++.+.-.+..+.+.|
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 468889999999888873 222222222333333 66666666666665554
No 272
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.99 E-value=0.0031 Score=48.74 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=22.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015590 241 HGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLE 292 (404)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 292 (404)
..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3333444444444444444443333344444445555555444444444443
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.88 E-value=8 Score=35.98 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=37.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 273 ILISGLRKQGKVEEGMKLLERMKGKGCY-PNSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 273 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
.+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3445555677777777777777654211 1234566777777777777777777777644
No 274
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.56 E-value=3.8 Score=31.39 Aligned_cols=52 Identities=10% Similarity=-0.050 Sum_probs=23.6
Q ss_pred cCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCC
Q 015590 104 AKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYN 158 (404)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 158 (404)
.++.+++..+++.+.... |.......+-.......|++++|.++|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLr---P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR---PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhC---CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 455555666655554332 2222222222222222566666666666655543
No 275
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.45 E-value=5.7 Score=33.23 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 015590 91 EALYTLIINKLAQAKRFDAIEDIMQRIK 118 (404)
Q Consensus 91 ~~~~~~li~~~~~~~~~~~a~~~~~~~~ 118 (404)
...|.....+|....++++|...+.+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3456666778888889999888777764
No 276
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.32 E-value=4.6 Score=31.83 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=69.3
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 183 QGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 183 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
.++.+.+.+.+++|+...+..+++.+.+.|++..-..++ ..++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 344555556677777777777777777777755544433 33334444433333322222 223333333333332
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 263 GIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 263 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
=...+..++..+...|++-+|.++.+..... +......++.+..+.++...=..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1113445666677777777777777665332 222224455555555555444444444433
No 277
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.29 E-value=3.7 Score=30.64 Aligned_cols=50 Identities=16% Similarity=0.014 Sum_probs=22.1
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAK 191 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 191 (404)
.|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+
T Consensus 56 ~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred ccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 444444544444443321 12334444444444444444444444444443
No 278
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=2.2 Score=36.92 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 213 NLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
+++++..++..=...|+-||..+++.+|+.+.+.++..+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555544443
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.20 E-value=0.42 Score=26.52 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 015590 236 YSTLMHGLCEKGNVEEAFGLLER 258 (404)
Q Consensus 236 ~~~li~~~~~~~~~~~A~~~~~~ 258 (404)
|+.|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 280
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.09 E-value=5.8 Score=32.48 Aligned_cols=215 Identities=18% Similarity=0.056 Sum_probs=148.5
Q ss_pred cCcHhHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHchhC-CCCCcHHHHHHHHHHHHHcCCHHHHH
Q 015590 176 AKLYGEIQGIYTSAAKLGVE-IDACCLNILLKGLCENGNLEAAFYVLDEFPKQ-NCEPNVRTYSTLMHGLCEKGNVEEAF 253 (404)
Q Consensus 176 ~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~ 253 (404)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45556666666666655322 13677888889999999999999988887652 22556677888888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015590 254 GLLERMESEGIDADTVTFNILIS-GLRKQGKVEEGMKLLERMKGKGC--YPNSASYQEVLYGLLDKKRFPEAKELVGRMI 330 (404)
Q Consensus 254 ~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (404)
..+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988764443 222333333 78899999999999999865321 1233444444445677899999999999998
Q ss_pred HCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHhHHHHHHhhccCCCCcchhh
Q 015590 331 CERMSP-SFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPR-MGMWREIVGCVTFGKDNRNRVY 394 (404)
Q Consensus 331 ~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~ 394 (404)
... .. ....+..+...+...++++++...+..... ..|+ ...+..+...+...+..+.+..
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence 752 33 467788888899999999999999999884 4444 3333333333334443444443
No 281
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.04 E-value=12 Score=36.19 Aligned_cols=276 Identities=13% Similarity=0.050 Sum_probs=148.1
Q ss_pred hhHHHHHHHHHhhCCCCCCCHHHHHHHHH----H-HHhcCCchHHHHHHHHHHh-------cccCCCChHHHHHHHHHHH
Q 015590 71 PISVISVLNQYSKRKDYNPNEALYTLIIN----K-LAQAKRFDAIEDIMQRIKV-------EKLCRFSDGFFYNVIKIYG 138 (404)
Q Consensus 71 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~ 138 (404)
...|.+.++...+.. +......+.. . +....|.+.|..+++.+.. .+ .....+.+-..|.
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYL 299 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHh
Confidence 467888888875433 2222222222 2 3456789999999998865 22 1112223333333
Q ss_pred hh---cC-CHHHHHHHHhhcccCCCCccHHHHHHHHHHHHh-cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH--hc
Q 015590 139 NM---AG-RISKAIETLFDMPSYNCWPSVKTFNLVLNLLVS-AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLC--EN 211 (404)
Q Consensus 139 ~~---~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~ 211 (404)
.. .. +.+.|+.++.+.-+.|. |+....-..+.-... ..+...|.++|...-+.|. ++..-+-.++-... -.
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVE 377 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcC
Confidence 21 22 77889999999888773 554443333322222 3567899999999999883 33333322222222 23
Q ss_pred CChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hc----CCC
Q 015590 212 GNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGL----RK----QGK 283 (404)
Q Consensus 212 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~----~g~ 283 (404)
.+.+.|..+++...+.| .|...--...+..+.. ++++.+...+..+.+.|.. +..+-...+..- .. ..+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccc
Confidence 46889999999999887 3333333333444444 7888888877777766544 222222111110 11 124
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHcCCChH
Q 015590 284 VEEGMKLLERMKGKGCYPNSASYQEVLYGLLDK----KRFPEAKELVGRMICERMSPSFVSYKKLIHG----LCNQKLVE 355 (404)
Q Consensus 284 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~----~~~~g~~~ 355 (404)
.+.+...+......| +......+-+.|..- .+++.|...+......+ ...+|+ +-.. ..... +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-hH
Confidence 555666666665554 333444444433322 24556666666555443 222222 2111 11223 56
Q ss_pred HHHHHHHHHHHC
Q 015590 356 DVDWVLKKMVQQ 367 (404)
Q Consensus 356 ~a~~~~~~m~~~ 367 (404)
.|.++++...+.
T Consensus 527 ~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 527 LAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhc
Confidence 666666666544
No 282
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.02 E-value=4 Score=30.46 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=25.4
Q ss_pred HHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 208 LCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
.+..|+++.|++.|.+....- +.....||.-..++.-.|+.++|++=+++..
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 344455555555555444332 3344455555555555555555555544443
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.90 E-value=1.6 Score=34.93 Aligned_cols=97 Identities=11% Similarity=0.051 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHH
Q 015590 269 VTFNILISGLRKQGKVEEGMKLLERMKGKGCYPN--SASYQEVLYGLLDKKRFPEAKELVGRMICE---RMSPSFVSYKK 343 (404)
Q Consensus 269 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~ 343 (404)
..+..+...|++.|+.++|.+.|.++.+....+. ...+-.+|....-.+++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566777888888888888888888877643333 345667777777788888888887776543 11112111111
Q ss_pred HHH--HHHcCCChHHHHHHHHHHH
Q 015590 344 LIH--GLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 344 li~--~~~~~g~~~~a~~~~~~m~ 365 (404)
... .+...|++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 112 2345778888888876654
No 284
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.63 E-value=4.4 Score=32.46 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 199 CCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPN--VRTYSTLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 199 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
..+..+.+.|.+.|+.+.|.+.|.++.+....+. ...+-.+|....-.+++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455666666666666666666666655432222 2334555666666666666666655544
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.49 E-value=0.52 Score=26.15 Aligned_cols=23 Identities=13% Similarity=0.119 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHH
Q 015590 166 FNLVLNLLVSAKLYGEIQGIYTS 188 (404)
Q Consensus 166 ~~~ll~~~~~~~~~~~a~~~~~~ 188 (404)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 286
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.46 E-value=6.7 Score=34.84 Aligned_cols=227 Identities=9% Similarity=0.041 Sum_probs=125.0
Q ss_pred cCCChhHHHHHHHHHhhCCC-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCCh----HHHHHHHHHHHhhc
Q 015590 67 NLRDPISVISVLNQYSKRKD-YNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSD----GFFYNVIKIYGNMA 141 (404)
Q Consensus 67 ~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 141 (404)
..++.++|+..+.+.+.+.. ...--.+|..+..+.++.|.++++...--.-...-....+. ..+.++-..+-+ -
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~-l 96 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK-L 96 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 44566777777666654321 11123456677777788887776654432211100000001 111222222221 2
Q ss_pred CCHHHHHHHHhhccc-CCCCcc---HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCC-----CCCHhHHHHHHHHHHhcC
Q 015590 142 GRISKAIETLFDMPS-YNCWPS---VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGV-----EIDACCLNILLKGLCENG 212 (404)
Q Consensus 142 g~~~~A~~~~~~m~~-~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~g 212 (404)
-++.+++.+-+.-.. .|..|. -....++..++...+.++++++.|+...+..- -....+|..|-..|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 233333333332211 121221 12344566777888899999999988765421 123468889999999999
Q ss_pred ChHHHHHHHHHchh----CCCCCcHH-HHH-----HHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHH
Q 015590 213 NLEAAFYVLDEFPK----QNCEPNVR-TYS-----TLMHGLCEKGNVEEAFGLLERMES----EGIDA-DTVTFNILISG 277 (404)
Q Consensus 213 ~~~~a~~~~~~~~~----~~~~~~~~-~~~-----~li~~~~~~~~~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~ 277 (404)
|+++|.-+.....+ .++ .|.. -|. .|.-++...|...+|.+.-++..+ .|-.| -......+.+.
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l-~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGL-KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCc-CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 99988766554432 221 1221 222 244467778888888887776543 33222 12344567788
Q ss_pred HHcCCCHHHHHHHHHHHh
Q 015590 278 LRKQGKVEEGMKLLERMK 295 (404)
Q Consensus 278 ~~~~g~~~~a~~~~~~m~ 295 (404)
|-..|+.+.|+.-|+...
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 889999999988887654
No 287
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.22 E-value=12 Score=34.42 Aligned_cols=73 Identities=11% Similarity=0.113 Sum_probs=42.0
Q ss_pred CCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 015590 298 GCYPNSA-SYQEVLYGLLDKKRFPEAKELVGRMICERMSP----SFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPR 372 (404)
Q Consensus 298 ~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 372 (404)
-+.|+.. +...|+..+.. +.+++..+-+.+....+.+ =..+|..++....+.++..+|.+.+.-+. -+.|+
T Consensus 255 yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~--~ldp~ 330 (549)
T PF07079_consen 255 YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK--ILDPR 330 (549)
T ss_pred ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--hcCCc
Confidence 3445432 33444444444 4555555555444332111 23567888888888999999988888776 34554
Q ss_pred HH
Q 015590 373 MG 374 (404)
Q Consensus 373 ~~ 374 (404)
..
T Consensus 331 ~s 332 (549)
T PF07079_consen 331 IS 332 (549)
T ss_pred ch
Confidence 43
No 288
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.08 E-value=18 Score=36.06 Aligned_cols=180 Identities=12% Similarity=0.155 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHH---HHhhcCCHHHHHHHHhhcccCCCCccHHHHHH
Q 015590 92 ALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKI---YGNMAGRISKAIETLFDMPSYNCWPSVKTFNL 168 (404)
Q Consensus 92 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 168 (404)
.+...-+..+.+..-++-|..+-+.-. .+......++.. ++-+.|++++|...|-+-... +.| ..
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~ 402 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SE 402 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HH
Confidence 345567777888888888888766531 233334444333 333489999999998876542 223 33
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC
Q 015590 169 VLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN 248 (404)
Q Consensus 169 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 248 (404)
++.-|........-..+++.+.+.|+ .+...-..|+++|.+.++.++-.+..+.-. .|... .-....+..+.+.+-
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNY 478 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhCh
Confidence 56666777788888889999999985 466677889999999999999888877665 33221 113445667777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 015590 249 VEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMK 295 (404)
Q Consensus 249 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 295 (404)
.++|..+-.+... .......+ +-..+++++|++.+..+.
T Consensus 479 l~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 479 LDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 7877766555433 23333333 345688999998887664
No 289
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.22 E-value=3.1 Score=29.05 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015590 285 EEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMI 330 (404)
Q Consensus 285 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (404)
-++.+-++.+......|++....+-+++|.+.+++..|.++++..+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444445555555556666666666666666666666666666555
No 290
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.95 E-value=10 Score=33.81 Aligned_cols=127 Identities=10% Similarity=-0.049 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CCCCChhhHH-
Q 015590 238 TLMHGLCEKGNVEEAFGLLERMESE-----GIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK----GCYPNSASYQ- 307 (404)
Q Consensus 238 ~li~~~~~~~~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~- 307 (404)
+|..+....+.++++++.|+...+- +.......+..|-..|.+..++++|.-+..+..+. ++.--...|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3455555556667777776665432 11112345666666666667777666555544322 2111111122
Q ss_pred ----HHHHHHHhcCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 015590 308 ----EVLYGLLDKKRFPEAKELVGRMIC----ERMSP-SFVSYKKLIHGLCNQKLVEDVDWVLKKM 364 (404)
Q Consensus 308 ----~li~~~~~~g~~~~a~~~~~~~~~----~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (404)
.|.-++...|.+..|.+.-++..+ .|-.+ -......+.+.|...|+.|.|..-|+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 223334455666555555555432 23222 1233445556666677776666555543
No 291
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.42 E-value=2.5 Score=29.85 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 286 EGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 286 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
+..+-+..+....+.|++....+.+.+|.+.+++..|.++++..+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444455556666666666666666666666666665554
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.34 E-value=0.55 Score=25.68 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=8.4
Q ss_pred CHhHHHHHHHHHHhcCChHHH
Q 015590 197 DACCLNILLKGLCENGNLEAA 217 (404)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~a 217 (404)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 333444444444444444333
No 293
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.95 E-value=0.6 Score=25.56 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=16.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHH
Q 015590 230 EPNVRTYSTLMHGLCEKGNVEEAF 253 (404)
Q Consensus 230 ~~~~~~~~~li~~~~~~~~~~~A~ 253 (404)
|-+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 556667777777777777777664
No 294
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.87 E-value=15 Score=31.81 Aligned_cols=136 Identities=10% Similarity=0.091 Sum_probs=85.6
Q ss_pred cCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCChhH
Q 015590 246 KGNVEEAFGLLERMES-EGIDADTVTFNILISGLRKQG--KVEEGMKLLERMKGK-GCYPNSASYQEVLYGLLDKKRFPE 321 (404)
Q Consensus 246 ~~~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~ 321 (404)
+....+|+++|+.... ..+--|..+...+++...... ....-.++.+-+... +-.++..+...++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 4456677777774322 233446666666776665522 223333344444433 456778888888888888899988
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHH-----HHHCCCCCCHHhHHHHHH
Q 015590 322 AKELVGRMICE-RMSPSFVSYKKLIHGLCNQKLVEDVDWVLKK-----MVQQGFVPRMGMWREIVG 381 (404)
Q Consensus 322 a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~~~~p~~~~~~~ll~ 381 (404)
-.++|...... +..-|...|..+|+.....|+..-..++..+ +.+.|+..+...-..|-+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 88888887655 5566788888888888888887666666553 223345555444444433
No 295
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.82 E-value=28 Score=35.01 Aligned_cols=223 Identities=11% Similarity=-0.017 Sum_probs=121.1
Q ss_pred cCCHHHHHHHHhhcccC----CCCccH---HHHHHHHH-HHHhcCcHhHHHHHHHHHHHc----CCCCCHhHHHHHHHHH
Q 015590 141 AGRISKAIETLFDMPSY----NCWPSV---KTFNLVLN-LLVSAKLYGEIQGIYTSAAKL----GVEIDACCLNILLKGL 208 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~----~~~p~~---~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~~ 208 (404)
..++++|..+..++... +..+.. ..|+.+-. .....|+++++.++.+..... ...+....+..+..+.
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~ 507 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA 507 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence 68888988888765432 212222 23444432 234568889998888877654 2234556667777788
Q ss_pred HhcCChHHHHHHHHHchhCCCCCcHH---HHHHHH--HHHHHcCC--HHHHHHHHHHHHHCC--CC----CCHHHHHHHH
Q 015590 209 CENGNLEAAFYVLDEFPKQNCEPNVR---TYSTLM--HGLCEKGN--VEEAFGLLERMESEG--ID----ADTVTFNILI 275 (404)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li--~~~~~~~~--~~~A~~~~~~m~~~~--~~----p~~~~~~~li 275 (404)
.-.|++++|..+..+..+..-.-++. .|..+. ..+...|+ ..+.+..|....... -+ +-..++..++
T Consensus 508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll 587 (894)
T COG2909 508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL 587 (894)
T ss_pred HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Confidence 88899999998887766532122333 333332 23455663 333333444333221 11 1223445555
Q ss_pred HHHHcC-CCHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHhcCChhHHHHHHHHHHHCCCC----CCHHHHHHHHH--
Q 015590 276 SGLRKQ-GKVEEGMKLLERMKGKGCYPNSASYQ--EVLYGLLDKKRFPEAKELVGRMICERMS----PSFVSYKKLIH-- 346 (404)
Q Consensus 276 ~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~~li~-- 346 (404)
.++.+. +...++..-+.--......|-..... .|+......|+.++|...++++...... ++..+-...+.
T Consensus 588 ~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~ 667 (894)
T COG2909 588 RAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLI 667 (894)
T ss_pred HHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHH
Confidence 555551 12222222222222222222222222 6777788899999999999988765322 23333233332
Q ss_pred HHHcCCChHHHHHHHHH
Q 015590 347 GLCNQKLVEDVDWVLKK 363 (404)
Q Consensus 347 ~~~~~g~~~~a~~~~~~ 363 (404)
.....|+.+++.....+
T Consensus 668 lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 668 LWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhcccCCHHHHHHHHHh
Confidence 33457888877776665
No 296
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.58 E-value=13 Score=30.71 Aligned_cols=67 Identities=16% Similarity=0.028 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc
Q 015590 125 FSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL 192 (404)
Q Consensus 125 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 192 (404)
|.-...+|.+..|....|+++.|.+.|+...+.+..-+-...|.-| ++--.|++..|.+=+...-+.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc
Confidence 4445566666666666777777777777777654111111112112 222346666666655554443
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.26 E-value=5.6 Score=32.27 Aligned_cols=72 Identities=15% Similarity=0.039 Sum_probs=32.8
Q ss_pred HHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHcCCCHHHH
Q 015590 215 EAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE---GIDADTVTFNILISGLRKQGKVEEG 287 (404)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a 287 (404)
+.|.+.|-.+...+.--++....++...| ...+.+++..++.+..+. +-.+|+..+.+|...+.+.|+.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555555544322333333333222 244555555555544332 2234455555555555555555544
No 298
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.09 E-value=4.1 Score=33.39 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 015590 270 TFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE--RMSPSFVSYKKLIHG 347 (404)
Q Consensus 270 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~ 347 (404)
|.+.-++.+.+.+...+++...++-.+.+ +.|..+-..+++.++-.|++++|..-++-.-.. ...+-..+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556677888899999999998888774 335667778899999999999998877766543 123445667666654
No 299
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.01 E-value=52 Score=37.18 Aligned_cols=293 Identities=11% Similarity=0.052 Sum_probs=154.3
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhCCCCCC-CHHH-HHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 015590 60 EVLKIFSNLRDPISVISVLNQYSKRKDYNP-NEAL-YTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIY 137 (404)
Q Consensus 60 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (404)
++-.+=.+.+.+.+|+..++... ....+. -... |..+...|+.-+++|...-+...-. -+..+..-+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~-~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-------a~~sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHR-STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-------ADPSLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-------cCccHHHHHHHH
Confidence 33445567788999999999841 111111 1233 3444449999999999888877411 122345555555
Q ss_pred HhhcCCHHHHHHHHhhcccCCCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHH-HHHHHHHHhcCChH
Q 015590 138 GNMAGRISKAIETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCL-NILLKGLCENGNLE 215 (404)
Q Consensus 138 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~ 215 (404)
.. .|+++.|...|+.+.+.+ |+ ..+++-++......+.++.+.-..+...... .+....+ +.-+.+--+.++++
T Consensus 1460 e~-~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1460 EA-SGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred Hh-hccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchh
Confidence 55 899999999999999866 55 6678877777777777777766555444332 2222222 23344445666666
Q ss_pred HHHHHHHH-------------chhCCCCCcHHHH-HHH-------H---HHHHHcCCHHHHHHHHHHHH-----------
Q 015590 216 AAFYVLDE-------------FPKQNCEPNVRTY-STL-------M---HGLCEKGNVEEAFGLLERME----------- 260 (404)
Q Consensus 216 ~a~~~~~~-------------~~~~~~~~~~~~~-~~l-------i---~~~~~~~~~~~A~~~~~~m~----------- 260 (404)
..+..... ..-..-..|.... +.+ + .++...|.+..+.++.-++.
T Consensus 1536 ~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~ 1615 (2382)
T KOG0890|consen 1536 LLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEE 1615 (2382)
T ss_pred hhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555330 0000001121111 110 0 11111111112222111110
Q ss_pred HCCCCCCHH------HHHHHHHHHHcCCCHHHHHHHHHH-HhhCCCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 015590 261 SEGIDADTV------TFNILISGLRKQGKVEEGMKLLER-MKGKGCYP-----NSASYQEVLYGLLDKKRFPEAKELVGR 328 (404)
Q Consensus 261 ~~~~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~-m~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (404)
..+..++.. -|..-+..-....+..+-.--+++ +......| -..+|-...+....+|+++.|...+-.
T Consensus 1616 l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~ 1695 (2382)
T KOG0890|consen 1616 LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLN 1695 (2382)
T ss_pred hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 011122111 121111111111111111111111 11111111 246788888888889999999998888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 015590 329 MICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ 367 (404)
Q Consensus 329 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (404)
..+.+ .| ..+--...-....|+...|..++++-.+.
T Consensus 1696 A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1696 AKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 87764 33 34555567788999999999999998864
No 300
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.01 E-value=22 Score=32.83 Aligned_cols=124 Identities=19% Similarity=0.144 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHc---CCCHHHHHHHHHHHhhCCCCCCh----hhHHHHHHH--HHh
Q 015590 249 VEEAFGLLERMESEGIDADTVTFNILI----SGLRK---QGKVEEGMKLLERMKGKGCYPNS----ASYQEVLYG--LLD 315 (404)
Q Consensus 249 ~~~A~~~~~~m~~~~~~p~~~~~~~li----~~~~~---~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~--~~~ 315 (404)
-++|+++++...+-.. -|...-|.+. ..|.. ...+.+-..+-+-+.+.|+.|-. ..-|.|.++ +..
T Consensus 396 dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 5666777666654311 1322222221 22221 22344445555555566776643 334445444 456
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 015590 316 KKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIV 380 (404)
Q Consensus 316 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 380 (404)
.|++.++.-.-..+.+ +.|++.+|.-+.-+.....++++|..++.. ++|+..++++=+
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dskv 532 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSKV 532 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHHH
Confidence 7899888877777665 689999999888888889999999999986 456666655433
No 301
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.80 E-value=8.4 Score=32.96 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=46.8
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH----
Q 015590 170 LNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE---- 245 (404)
Q Consensus 170 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 245 (404)
|.+++..++|.++....-+.-+..-+....+....|-.|+|.|++..+.++-..-...--.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5666666666666665544433222233444555566666777766666655544332112333446666555544
Q ss_pred -cCCHHHHHHHH
Q 015590 246 -KGNVEEAFGLL 256 (404)
Q Consensus 246 -~~~~~~A~~~~ 256 (404)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666665
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.65 E-value=6.3 Score=31.97 Aligned_cols=72 Identities=15% Similarity=0.043 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC---CCCCChhhHHHHHHHHHhcCChhHH
Q 015590 250 EEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK---GCYPNSASYQEVLYGLLDKKRFPEA 322 (404)
Q Consensus 250 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a 322 (404)
++|.+.|-.+...+.--++.....|...|. ..+.+++.+++.+..+. +-.+|+..+..|++.+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444545544443323333333333332 34445555555444432 2234455555555555555555444
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.92 E-value=2 Score=24.30 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 015590 235 TYSTLMHGLCEKGNVEEAFGLLERM 259 (404)
Q Consensus 235 ~~~~li~~~~~~~~~~~A~~~~~~m 259 (404)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4455555555555555555555544
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.55 E-value=9 Score=26.87 Aligned_cols=62 Identities=11% Similarity=0.017 Sum_probs=39.4
Q ss_pred CHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHH
Q 015590 143 RISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILL 205 (404)
Q Consensus 143 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 205 (404)
+.=++.+-++.+...++.|++....+.+++|.+.+++..|.++++-.+... ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 444556666666666677777777777777777777777777777666321 11333454444
No 305
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.49 E-value=1.8 Score=23.32 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=8.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 015590 308 EVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 308 ~li~~~~~~g~~~~a~~~~~~~ 329 (404)
.+...+...|++++|+..|++.
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHH
Confidence 3333333444444444444333
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.47 E-value=1.4 Score=23.81 Aligned_cols=28 Identities=11% Similarity=0.038 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 339 VSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 339 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
.+|..+..+|...|++++|...|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4678889999999999999999999884
No 307
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.16 E-value=0.29 Score=37.61 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=45.8
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC
Q 015590 169 VLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN 248 (404)
Q Consensus 169 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 248 (404)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 3445555666666666666666655455566667777777776666666665552221 122334455555555
Q ss_pred HHHHHHHHHHH
Q 015590 249 VEEAFGLLERM 259 (404)
Q Consensus 249 ~~~A~~~~~~m 259 (404)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555443
No 308
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.07 E-value=37 Score=33.48 Aligned_cols=188 Identities=16% Similarity=0.175 Sum_probs=108.1
Q ss_pred hHHHHHHHHHhhCCCCCCCHH--HHHHHHHHHH-hcCCchHHHHHHHHHHhcccC-CCChH--HHHHHHHHHHhhcCCHH
Q 015590 72 ISVISVLNQYSKRKDYNPNEA--LYTLIINKLA-QAKRFDAIEDIMQRIKVEKLC-RFSDG--FFYNVIKIYGNMAGRIS 145 (404)
Q Consensus 72 ~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~ 145 (404)
..|+..++...+....+|..+ ++-.+...+. ...+++.|+..+++....... ...+. ....++..++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 347778888875555555443 4555556555 788999999999976433211 11111 12234455555344444
Q ss_pred HHHHHHhhcccC----CCCccHHHHHHH-HHHHHhcCcHhHHHHHHHHHHHcC---CCCCHhHHHHHHHHHHh--cCChH
Q 015590 146 KAIETLFDMPSY----NCWPSVKTFNLV-LNLLVSAKLYGEIQGIYTSAAKLG---VEIDACCLNILLKGLCE--NGNLE 215 (404)
Q Consensus 146 ~A~~~~~~m~~~----~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~--~g~~~ 215 (404)
|....++..+. +..+-...|..+ +..+...+++..|.+.++.+.... ..|-..++..++.+... .+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888876542 111222334443 333333479999999998876542 24555566666665543 35556
Q ss_pred HHHHHHHHchhCC---------CCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 015590 216 AAFYVLDEFPKQN---------CEPNVRTYSTLMHGLC--EKGNVEEAFGLLERME 260 (404)
Q Consensus 216 ~a~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~ 260 (404)
++.+..+.+.... ..|...+|..+++.++ ..|+++.+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666553211 2456677888877654 5677667666655553
No 309
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.07 E-value=22 Score=30.79 Aligned_cols=118 Identities=10% Similarity=0.133 Sum_probs=79.0
Q ss_pred cCCHHHHHHHHhhccc-CCCCccHHHHHHHHHHHHhcC--cHhHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhcCChHH
Q 015590 141 AGRISKAIETLFDMPS-YNCWPSVKTFNLVLNLLVSAK--LYGEIQGIYTSAAK-LGVEIDACCLNILLKGLCENGNLEA 216 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~ 216 (404)
+..+.+|+++|+.... ..+--|..+...+++...... ....-.++.+.+.. .|-.++..+...++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 4557788888884332 234456667777777666522 22222333333332 2346778888888999999999999
Q ss_pred HHHHHHHchhC-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015590 217 AFYVLDEFPKQ-NCEPNVRTYSTLMHGLCEKGNVEEAFGLLER 258 (404)
Q Consensus 217 a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 258 (404)
-.++++..... +...|...|..+|....+.|+..-...+.++
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 88888876654 5567888899999999999888766665543
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.61 E-value=1.6 Score=23.41 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 341 YKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
|..+...+...|++++|.+.|++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344445555555555555555544
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.38 E-value=15 Score=28.26 Aligned_cols=19 Identities=16% Similarity=0.398 Sum_probs=10.0
Q ss_pred HcCCCHHHHHHHHHHHhhC
Q 015590 279 RKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 279 ~~~g~~~~a~~~~~~m~~~ 297 (404)
...|++++|.++|+++.+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3445555555555555544
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.37 E-value=2.3 Score=24.04 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 015590 270 TFNILISGLRKQGKVEEGMKLLERM 294 (404)
Q Consensus 270 ~~~~li~~~~~~g~~~~a~~~~~~m 294 (404)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444445555554444443
No 313
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.62 E-value=40 Score=31.78 Aligned_cols=178 Identities=14% Similarity=0.109 Sum_probs=114.9
Q ss_pred ccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHH
Q 015590 161 PSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLM 240 (404)
Q Consensus 161 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 240 (404)
.|.....+++..+.....+.-++.+..+|...| .+...+-.++.+|... ..++-..+|+++.+..+ .|++.-..+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 455566777888888888888888888888775 4667788888888887 55677778887777642 2333344444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHH
Q 015590 241 HGLCEKGNVEEAFGLLERMESEGID-----ADTVTFNILISGLRKQGKVEEGMKLLERMKGK-GCYPNSASYQEVLYGLL 314 (404)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~ 314 (404)
.-|-+ ++.+.+...|.+...+-++ .-...|.-+...- ..+.+....+..++... |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44444 7888888888877654221 0112455554321 35667777777777665 54445566666667777
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015590 315 DKKRFPEAKELVGRMICERMSPSFVSYKKLIH 346 (404)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 346 (404)
...++++|++++..+.+.+ ..|...-..++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 7888888888888877663 334444344443
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.62 E-value=29 Score=30.11 Aligned_cols=70 Identities=16% Similarity=0.019 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----CCCCCCHHhH
Q 015590 306 YQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ-----QGFVPRMGMW 376 (404)
Q Consensus 306 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 376 (404)
++.....|..+|.+.+|.++.+....-+ +.+...+-.+++.+...|+--.+.+-++.+.+ .|+..|...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3445566777777777777777776542 44666677777777777775555555544432 2666665544
No 315
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.24 E-value=14 Score=26.26 Aligned_cols=63 Identities=11% Similarity=0.008 Sum_probs=38.8
Q ss_pred CHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 015590 143 RISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLK 206 (404)
Q Consensus 143 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 206 (404)
+.=+..+-++.+...++.|++....+.+++|.+.+++..|.++++-++..- .+....|..++.
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 334556666667777777888888888888888888888888888776542 222225655543
No 316
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.14 E-value=25 Score=29.07 Aligned_cols=163 Identities=16% Similarity=0.124 Sum_probs=91.7
Q ss_pred CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHH-HHHHHHhhcCCHHHHHHHHhhcccCC-CCccH
Q 015590 87 YNPN-EALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYN-VIKIYGNMAGRISKAIETLFDMPSYN-CWPSV 163 (404)
Q Consensus 87 ~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~ 163 (404)
+.|+ +.+||-+.--+...|+++.|.+.|+...+.+ +..+-...| .+..|+ .|+++-|.+-|...-+.+ -.|=.
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY--~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYY--GGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeee--cCchHhhHHHHHHHHhcCCCChHH
Confidence 3454 6788888888999999999999999987665 222333333 444444 699999998887776644 11222
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHH-HHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCC------CCcHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIY-TSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNC------EPNVRTY 236 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~ 236 (404)
..|-.+.. ..-++.+|..-+ ++.. ..|..-|...|-.|.- |++. .+.+++.+..-.- ..=..||
T Consensus 170 ~LWLYl~E---~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEty 240 (297)
T COG4785 170 SLWLYLNE---QKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETY 240 (297)
T ss_pred HHHHHHHH---hhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHH
Confidence 34443332 333555555433 3333 2344444443333321 2211 1223333322110 0113456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 237 STLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 237 ~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
--+..-|...|+.++|..+|+-....
T Consensus 241 FYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 241 FYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHH
Confidence 66777777888888888888776654
No 317
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.05 E-value=23 Score=28.65 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=55.4
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHH----HHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHH
Q 015590 98 INKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNV----IKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLL 173 (404)
Q Consensus 98 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 173 (404)
...+...+++++|..-++..... +.+..+-.+ +.......|.+|+|+.+++.....+. .......-.+.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 45666788888888888775422 233333222 22222237888888888877666432 122233445677
Q ss_pred HhcCcHhHHHHHHHHHHHcC
Q 015590 174 VSAKLYGEIQGIYTSAAKLG 193 (404)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~g 193 (404)
...|+-++|..-|+.....+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 78888888888888877764
No 318
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=82.83 E-value=46 Score=31.90 Aligned_cols=106 Identities=12% Similarity=0.097 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCChhHHH---HHHHHHHHCCCCCCHHHHHHHHH-----HHHcC
Q 015590 281 QGKVEEGMKLLERMKGKGCYPNSA-SYQEVLYGLLDKKRFPEAK---ELVGRMICERMSPSFVSYKKLIH-----GLCNQ 351 (404)
Q Consensus 281 ~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~---~~~~~~~~~~~~p~~~~~~~li~-----~~~~~ 351 (404)
.|+++.|..+++.+...- |+.. .-..-+....+.|..+.+. +++....+. +-+..+...+.- .+.-.
T Consensus 379 ~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred hccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHh
Confidence 466777777777666552 3321 1112223344555555555 222222221 111111222211 23346
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcc
Q 015590 352 KLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRN 391 (404)
Q Consensus 352 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 391 (404)
++.+.|..++.++.+. +.++...|..+++-+.......+
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~~e 493 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSGRE 493 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcchh
Confidence 7788888888888743 44455567777775555444333
No 319
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.78 E-value=42 Score=31.47 Aligned_cols=97 Identities=9% Similarity=0.046 Sum_probs=71.3
Q ss_pred CCChhhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HcCCChHHHHHHHHHHHHC-CCCCCHH
Q 015590 300 YPNSASY-QEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGL---CNQKLVEDVDWVLKKMVQQ-GFVPRMG 374 (404)
Q Consensus 300 ~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~-~~~p~~~ 374 (404)
.|+..++ +.+++-+.+.|-..+|.+.+..+... .+|+...|..+|+.= ..+| ...++.+++.|... | .|+.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChH
Confidence 4455444 45677777888899999999999876 467888888888643 2333 78889999999876 7 6777
Q ss_pred hHHHHHHhhccCCCCcchhhHHHhhh
Q 015590 375 MWREIVGCVTFGKDNRNRVYVTETVD 400 (404)
Q Consensus 375 ~~~~ll~~~~~~~~~~~~~~~~~~~~ 400 (404)
.|.-.+.-=...|..+++-.+...-.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHH
Confidence 78877776667788888776655443
No 320
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.54 E-value=12 Score=30.87 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC--CCCCcHHHHHHHHHH
Q 015590 166 FNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ--NCEPNVRTYSTLMHG 242 (404)
Q Consensus 166 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~ 242 (404)
.+..++.+.+.++..+++...++-++.. +.|...-..++..|+-.|+|++|..-++-.-.. ...+....|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566667778888888777766664 556666677788888888888887666554332 113445566666654
No 321
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.16 E-value=4.6 Score=21.47 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=10.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 237 STLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 237 ~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
..+...|.+.|++++|.+.|++..
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444444444444444444443
No 322
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.09 E-value=3.2 Score=24.31 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=12.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHH
Q 015590 344 LIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 344 li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
+..+|...|+.+.|+++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555553
No 323
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.68 E-value=16 Score=25.87 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLN 202 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 202 (404)
.|++++|+.+.+.+. .||...|-.+-. .+.|..++...-+..+...| .|....|.
T Consensus 52 rG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 52 RGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred cchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 677888877777663 477777765543 36666666666666666666 44444443
No 324
>PRK09687 putative lyase; Provisional
Probab=81.34 E-value=36 Score=29.67 Aligned_cols=137 Identities=13% Similarity=0.013 Sum_probs=65.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015590 197 DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKG-NVEEAFGLLERMESEGIDADTVTFNILI 275 (404)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li 275 (404)
+..+-...+.++++.++. .+...+-.+.+ .+|...-..-+.++.+.+ +.+.+...+..+... +|...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 444444455555555553 33343333333 233333344444444432 233444544444432 3555555666
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015590 276 SGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLC 349 (404)
Q Consensus 276 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 349 (404)
.++.+.|+. .+...+-+..+.+ + .....+.+++..|.. +|...+..+.+. .||...-...+.+|.
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 666666663 3444443333332 1 233556666666664 566666666543 345555555555543
No 325
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.11 E-value=17 Score=25.76 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=22.2
Q ss_pred HHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 207 GLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
.+...|++++|..+.+.+. .||...|-++.. .+.|..+++..-+.+|..+
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3444455555554444442 455555544433 2344444444444444443
No 326
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.09 E-value=8.9 Score=33.80 Aligned_cols=53 Identities=15% Similarity=0.023 Sum_probs=36.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 015590 241 HGLCEKGNVEEAFGLLERMESEGIDA-DTVTFNILISGLRKQGKVEEGMKLLERMK 295 (404)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 295 (404)
+-|.+.|.+++|++.|..-... .| |.+++..-..+|.+...+..|+.=-....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4577888888888888766544 34 77777777777877777776665444444
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.16 E-value=59 Score=31.39 Aligned_cols=100 Identities=18% Similarity=0.130 Sum_probs=55.0
Q ss_pred HHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 015590 208 LCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEG 287 (404)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 287 (404)
..+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|.+.. -|..|+-.+...|+-+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHH
Confidence 345566666665544432 45556666666666666666666665543 234455555556665555
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 015590 288 MKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGR 328 (404)
Q Consensus 288 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (404)
..+-....+.|. .|.-.-+|...|+++++.+++.+
T Consensus 712 ~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 555555444431 12223345556666666666543
No 328
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.20 E-value=71 Score=31.75 Aligned_cols=274 Identities=11% Similarity=0.030 Sum_probs=138.5
Q ss_pred ChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHH
Q 015590 70 DPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIE 149 (404)
Q Consensus 70 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 149 (404)
.+++...++++. .+.+.....-...+..+++.++++...+++.. .+.+...-+....+... .|+.++|..
T Consensus 81 ~~~ev~~Fl~~~---~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~------~p~~~~~~c~~~~A~~~-~G~~~~A~~ 150 (644)
T PRK11619 81 PAVQVTNFIRAN---PTLPPARSLQSRFVNELARREDWRGLLAFSPE------KPKPVEARCNYYYAKWA-TGQQQEAWQ 150 (644)
T ss_pred CHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHccCHHHHHHhcCC------CCCCHHHHHHHHHHHHH-cCCHHHHHH
Confidence 456555555543 33344444445556667777788776663322 12233333445555555 788777766
Q ss_pred HHhhcccCCCCccHHHHHHHHHHHHhcCcHhH--HHHHHHHHHHcCC-----------CCC-HhHHHHHHHHHHhcCChH
Q 015590 150 TLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGE--IQGIYTSAAKLGV-----------EID-ACCLNILLKGLCENGNLE 215 (404)
Q Consensus 150 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~g~-----------~~~-~~~~~~li~~~~~~g~~~ 215 (404)
....+=..| ...+..++.++..+.+.|.... ..+=++.+...|- +++ ......++..+. +..
T Consensus 151 ~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~ 226 (644)
T PRK11619 151 GAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPN 226 (644)
T ss_pred HHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHH
Confidence 666654443 2345677777777776654332 2222222222221 111 111112222221 122
Q ss_pred HHHHHHHHchhCCCCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHcCCCHHHHHHH
Q 015590 216 AAFYVLDEFPKQNCEPNVRTYSTLMHGLC--EKGNVEEAFGLLERMESEG-IDADT--VTFNILISGLRKQGKVEEGMKL 290 (404)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~~-~~p~~--~~~~~li~~~~~~g~~~~a~~~ 290 (404)
.+...+... +++...-...+.++. ...+.+.|..++....... ..+.. ..+..+.......+..+++...
T Consensus 227 ~~~~~~~~~-----~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w 301 (644)
T PRK11619 227 TVETFARTT-----GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKW 301 (644)
T ss_pred HHHHHhhcc-----CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 222222211 122211121222222 3446688888888774442 22221 2334444444444335667777
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 291 LERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 291 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
++...... .+......-+....+.++++.+...+..|.... .-...-.--+.+++...|+.++|..+|+.+.
T Consensus 302 ~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 302 RDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 76654332 244444555555568888988888888875542 2233333345677777899999999988875
No 329
>PRK09687 putative lyase; Provisional
Probab=79.09 E-value=43 Score=29.20 Aligned_cols=137 Identities=12% Similarity=0.030 Sum_probs=76.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHhhCCCCCChhhHHHH
Q 015590 231 PNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQG-KVEEGMKLLERMKGKGCYPNSASYQEV 309 (404)
Q Consensus 231 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l 309 (404)
++..+-...+.++++.++ +++...+-.+.+. +|...-...+.++.+.+ +.+.+...+..+... ++..+-...
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHH
Confidence 355555566666666665 4455555555543 34444444555555442 234555555555533 366667777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhh
Q 015590 310 LYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCV 383 (404)
Q Consensus 310 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 383 (404)
+.++++.|+ ..|+..+-...+.+ + .....+.++...|.. +|...+..+.+ -.||..+-...+.+|
T Consensus 213 ~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 213 IIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHH
Confidence 777777776 34555555554432 2 234566777777764 67777777763 234665555555554
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.89 E-value=31 Score=33.10 Aligned_cols=131 Identities=12% Similarity=0.025 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015590 200 CLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLR 279 (404)
Q Consensus 200 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 279 (404)
.-+.+...+.+.|-.++|+++ .+|..-- .....+.|+++.|.++-.+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 344555566666666666544 2222111 123346677777766655543 5566777777777
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 015590 280 KQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDW 359 (404)
Q Consensus 280 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 359 (404)
..|++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|. .|. ..-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N~-----AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NNL-----AFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cch-----HHHHHHHcCCHHHHHH
Confidence 77777777777765553 33455555666665555555555555542 222 2234555667766666
Q ss_pred HHHH
Q 015590 360 VLKK 363 (404)
Q Consensus 360 ~~~~ 363 (404)
++.+
T Consensus 743 lLi~ 746 (794)
T KOG0276|consen 743 LLIS 746 (794)
T ss_pred HHHh
Confidence 6543
No 331
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.60 E-value=9 Score=31.15 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=41.9
Q ss_pred hcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 015590 66 SNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVE 120 (404)
Q Consensus 66 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 120 (404)
...++.+......+++.+.....|++.+|..++.++...|+.++|.++..++..-
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556666666666666555556799999999999999999999999998887643
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.17 E-value=4.4 Score=20.35 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=5.8
Q ss_pred HHHHhcCChHHHHHH
Q 015590 206 KGLCENGNLEAAFYV 220 (404)
Q Consensus 206 ~~~~~~g~~~~a~~~ 220 (404)
..+...|++++|..+
T Consensus 9 ~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 9 RALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHcCCHHHHHHH
Confidence 333333444433333
No 333
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=78.05 E-value=27 Score=34.04 Aligned_cols=135 Identities=10% Similarity=0.080 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 015590 232 NVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLY 311 (404)
Q Consensus 232 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 311 (404)
+...-.-++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+..+.+.|+...+..+-+.+.+.....+......+++
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~ 481 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLD 481 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------------------------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 444455666777777777777777766644311 223455555666666666555444444433211111111112221
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhh
Q 015590 312 GLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHG--LCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCV 383 (404)
Q Consensus 312 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 383 (404)
...... + +.+...-|..+-+- ..+.|++.+|.+.+-.+.+.++.|...-...|..+.
T Consensus 482 ~i~~~~-----------~----~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 482 NIGSPM-----------L----LSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp --------------------------------------------------------------------------
T ss_pred Hhcchh-----------h----hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 111111 0 01111111111111 123478888888888888778888776665555543
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.38 E-value=7.7 Score=20.63 Aligned_cols=27 Identities=15% Similarity=-0.006 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 340 SYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666777777777777777777663
No 335
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=77.24 E-value=24 Score=25.34 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=11.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 230 EPNVRTYSTLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 230 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
.||...|-++.. .+.|..+++...+.++.
T Consensus 68 ~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 68 YPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp -GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred CccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 344444443332 24444444444444443
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.93 E-value=9 Score=20.35 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 235 TYSTLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 235 ~~~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
+|..+...|.+.|++++|...|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555555555555555555543
No 337
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.91 E-value=6.8 Score=26.27 Aligned_cols=52 Identities=6% Similarity=0.159 Sum_probs=36.7
Q ss_pred HHHHhcCCChhHHHHHHHHHhhCCCCCCCH-HHHHHHHHHHHhcCCchHHHHHH
Q 015590 62 LKIFSNLRDPISVISVLNQYSKRKDYNPNE-ALYTLIINKLAQAKRFDAIEDIM 114 (404)
Q Consensus 62 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~ 114 (404)
+..| +.++.+.|+..|...++...-+|+. .++..++.+++..|++.+.+++-
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 6677888999999988765444443 46777888888888887766553
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.54 E-value=4.7 Score=21.19 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=8.9
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 015590 242 GLCEKGNVEEAFGLLERMES 261 (404)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~ 261 (404)
++.+.|++++|...|+++.+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 33444444444444444433
No 339
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.06 E-value=49 Score=28.54 Aligned_cols=91 Identities=5% Similarity=-0.001 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015590 201 LNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRK 280 (404)
Q Consensus 201 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 280 (404)
+..=|.+++..++|.++..+.-+--+.--+.........|-.|.+.+.+..+.++-..-...--.-+...|..++..|..
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 34458899999999999876554433211233445566677889999999998887766554222244558777776654
Q ss_pred -----CCCHHHHHHHH
Q 015590 281 -----QGKVEEGMKLL 291 (404)
Q Consensus 281 -----~g~~~~a~~~~ 291 (404)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 69999999887
No 340
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.43 E-value=73 Score=29.83 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=73.4
Q ss_pred cCcHhHH-HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 015590 176 AKLYGEI-QGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFG 254 (404)
Q Consensus 176 ~~~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 254 (404)
.|+...| .+++..+....-.|+.....+ ......|+++.+...+....+. +.....+-.+++....+.|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4444433 334444444433444443333 3456678888888887766542 13445667788888888889999988
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 015590 255 LLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKG 298 (404)
Q Consensus 255 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 298 (404)
+-+-|....+. ++..........-..|-++++...|+++...+
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888776665 44333333333344577888888888876553
No 341
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.94 E-value=38 Score=26.01 Aligned_cols=86 Identities=8% Similarity=-0.001 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 015590 307 QEVLYGLLDKKRFPEAKELVGRMICER-----MSPSFVSYKKLIHGLCNQKL-VEDVDWVLKKMVQQGFVPRMGMWREIV 380 (404)
Q Consensus 307 ~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll 380 (404)
++++.-...-+.+...+.+++.+..-. -..+...|.+++.+.....- ---+..+|+-|.+.+.++++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444554444444442210 02234456666666655544 334455566666666666666777777
Q ss_pred HhhccCCCCcch
Q 015590 381 GCVTFGKDNRNR 392 (404)
Q Consensus 381 ~~~~~~~~~~~~ 392 (404)
.++.++...+..
T Consensus 123 ~~~l~g~~~~~~ 134 (145)
T PF13762_consen 123 KAALRGYFHDSL 134 (145)
T ss_pred HHHHcCCCCcch
Confidence 766666444443
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.54 E-value=8.6 Score=22.52 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=11.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhh
Q 015590 274 LISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 274 li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
+..+|...|+.+.|..++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444455555555555554443
No 343
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=73.16 E-value=15 Score=21.91 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=17.7
Q ss_pred HcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 015590 349 CNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVG 381 (404)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 381 (404)
.+.|...++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555555555555555555555555555443
No 344
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=73.03 E-value=24 Score=28.19 Aligned_cols=66 Identities=15% Similarity=0.307 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhCCCCCC--hhhHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 015590 284 VEEGMKLLERMKGKGCYPN--SASYQ-----EVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQK 352 (404)
Q Consensus 284 ~~~a~~~~~~m~~~~~~p~--~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 352 (404)
.+.|+.+|+.+.+.-..|. ..... ..+-.|.+.|.+++|.+++++... .|+......-+....+.+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 4566666666665522221 11111 223345566666666666666654 344443344444444443
No 345
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.64 E-value=33 Score=25.54 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 286 EGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 286 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
+..+-+.....-.+.|++.....-+.+|.+.+++..|.++|+-.+.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34445555555566777777777777777777777777777777654
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.32 E-value=66 Score=28.03 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=29.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015590 273 ILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMI 330 (404)
Q Consensus 273 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (404)
...+.|..+|.+.+|.++.++...-. +.+...|-.++..+...|+--.+.+-++++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 33445555555555555555555442 3344555555555555555555555554443
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.95 E-value=14 Score=24.88 Aligned_cols=19 Identities=5% Similarity=0.115 Sum_probs=8.0
Q ss_pred HHHHHHHHHhcCChhHHHH
Q 015590 306 YQEVLYGLLDKKRFPEAKE 324 (404)
Q Consensus 306 ~~~li~~~~~~g~~~~a~~ 324 (404)
+..++.+|+..|++.++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 348
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.69 E-value=1.3e+02 Score=31.03 Aligned_cols=65 Identities=9% Similarity=-0.105 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHhhccc---CCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 015590 141 AGRISKAIETLFDMPS---YNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCEN 211 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 211 (404)
+.+.+...++|..-.. ..+.++ .+-.|......+-+..+++.+....-.++....+.++..|++.
T Consensus 572 ~~~p~~gi~Ift~~~~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 572 NKNPEAGIQIFTSEDKQEAESISRD------DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ccCchhheeeeeccChhhhccCCHH------HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 4566666666665111 112221 1223556677778888888887765556777777777777653
No 349
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=71.47 E-value=53 Score=26.58 Aligned_cols=56 Identities=7% Similarity=0.244 Sum_probs=38.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC--------------CCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 015590 308 EVLYGLLDKKRFPEAKELVGRMICER--------------MSPSFVSYKKLIHGLCNQKLVEDVDWVLKK 363 (404)
Q Consensus 308 ~li~~~~~~g~~~~a~~~~~~~~~~~--------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 363 (404)
.++..|.+..+|.+..++++.|.+.. ..+--...|.....+.+.|..|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34555666667777777777665431 224445667777888999999999998873
No 350
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=70.96 E-value=77 Score=28.27 Aligned_cols=118 Identities=13% Similarity=0.033 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh---cCChhHHHHHH
Q 015590 250 EEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLD---KKRFPEAKELV 326 (404)
Q Consensus 250 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~ 326 (404)
+.-+.++++..+.+. -+...+..++..+.+..+.++..+.|+++...... +...|...|+.... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 445566666555532 24555566666677777777777777777665211 45556666554433 12344555555
Q ss_pred HHHHHC------CC----CCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 015590 327 GRMICE------RM----SPSF-------VSYKKLIHGLCNQKLVEDVDWVLKKMVQQGF 369 (404)
Q Consensus 327 ~~~~~~------~~----~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 369 (404)
.+.... +. .+-. ..+..+..-+...|..+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 443321 11 0111 1222233344568889999999998888765
No 351
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.77 E-value=89 Score=28.91 Aligned_cols=10 Identities=10% Similarity=-0.057 Sum_probs=4.3
Q ss_pred HHhcCcHhHH
Q 015590 173 LVSAKLYGEI 182 (404)
Q Consensus 173 ~~~~~~~~~a 182 (404)
.+..|+.+.+
T Consensus 75 A~~~g~~~~v 84 (413)
T PHA02875 75 AVEEGDVKAV 84 (413)
T ss_pred HHHCCCHHHH
Confidence 3344444433
No 352
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=70.71 E-value=6.1 Score=36.34 Aligned_cols=125 Identities=16% Similarity=0.206 Sum_probs=69.0
Q ss_pred cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCC------CC---CcHHHHHHHHHHH-----
Q 015590 178 LYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQN------CE---PNVRTYSTLMHGL----- 243 (404)
Q Consensus 178 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~---~~~~~~~~li~~~----- 243 (404)
.+++-.++++.+.+.| .+| ....-|++|.+.+++++|...+++-.+.| .+ -...+...++...
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 4677788888888776 344 44456888999999999998888776532 11 1223333444432
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHH-------HhhCCCCCChhhHHHH
Q 015590 244 CEKGNVEEAFGLLERMESEGIDAD---TVTFNILISGLRKQGKVEEGMKLLER-------MKGKGCYPNSASYQEV 309 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~-------m~~~~~~p~~~~~~~l 309 (404)
.++| ..++..+++-+...|+... .++||. -|++.=-++++..-|+. ..+.|+..|..+|..|
T Consensus 146 vRHG-tpDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpL 217 (480)
T TIGR01503 146 IRHG-TPDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPL 217 (480)
T ss_pred ccCC-CCcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCC
Confidence 1122 2346666666666665432 233432 23443344444444432 2334555566555543
No 353
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.10 E-value=60 Score=31.25 Aligned_cols=152 Identities=13% Similarity=0.067 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHH
Q 015590 88 NPNEALYTLIINKLAQAKR--FDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKT 165 (404)
Q Consensus 88 ~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 165 (404)
.|+..+...++.-....-= -+-+-.++..|.... .+.....|....|.+..|+...|...+.........-.-+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~---~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKPN---APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCC---CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 5666666665544432211 122444444443221 12233345556666668888888888877654321122234
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHH
Q 015590 166 FNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLC 244 (404)
Q Consensus 166 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 244 (404)
...|.+...+.|...+|..++.+..... -..+.++-.+.++|....+++.|.+.|.+..+.. +.+.+.-+.+...-|
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 5566777778888888888888777665 4556678888899999999999999998887764 445555555554433
No 354
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.08 E-value=55 Score=26.21 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 015590 249 VEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKG 298 (404)
Q Consensus 249 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 298 (404)
+++|...|++.... .|+...|+.-+... ++|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 34444444444443 56666666666554 23555555555543
No 355
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.65 E-value=1e+02 Score=29.01 Aligned_cols=123 Identities=14% Similarity=0.152 Sum_probs=81.0
Q ss_pred HHHHhcCChHHH-HHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 015590 206 KGLCENGNLEAA-FYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKV 284 (404)
Q Consensus 206 ~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 284 (404)
.--...|++..| .+++..+....-.|+.+...+.| +...|+++.+...+...... +.....+..++++..-+.|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 333445776665 44566665543355555444443 45788999998888766543 233566778888888899999
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 285 EEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 285 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
++|..+-.-|....++ ++.....-.-..-..|-++++.-.|.+....
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 9999999888887655 3333333333344557788888888888754
No 356
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.35 E-value=40 Score=24.30 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015590 213 NLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLE 292 (404)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 292 (404)
..++|..+.+.+...+ .-...+--+-+..+.+.|++++|+. .......||...|-+|-. .+.|.-+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~ALl----~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEALL----LPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHHHH----HHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHH----hcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 4566666666666654 2222233333445666777777711 112223566666655543 35666677777776
Q ss_pred HHhhCC
Q 015590 293 RMKGKG 298 (404)
Q Consensus 293 ~m~~~~ 298 (404)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 666554
No 357
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=69.34 E-value=1.2e+02 Score=29.95 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCc-------HhHHHHHHHHHHHcCCCCCH
Q 015590 126 SDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKL-------YGEIQGIYTSAAKLGVEIDA 198 (404)
Q Consensus 126 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~ 198 (404)
+....|.++-.+.+ +|++++|.++..+..+. .......+...+..+....+ -++...-|++..+.....|+
T Consensus 110 ~~~p~Wa~Iyy~LR-~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 110 NGDPIWALIYYCLR-CGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp TTEEHHHHHHHHHT-TT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred CCCccHHHHHHHHh-cCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 44557777766666 99999999999555442 22444567777777766532 23555666666655432244
No 358
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.55 E-value=13 Score=23.69 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 337 SFVSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
|..-.-.+|.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444455666666666666666666654
No 359
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.50 E-value=65 Score=26.40 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=9.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 015590 242 GLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~ 262 (404)
+|-+...+++|+.=|+++.+.
T Consensus 177 ayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHh
Confidence 344444445555444444443
No 360
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.41 E-value=15 Score=23.42 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=10.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 015590 238 TLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 238 ~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
.+|.+|.+.|++++|.+.++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555544443
No 361
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.80 E-value=40 Score=25.11 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=33.8
Q ss_pred HHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc
Q 015590 147 AIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL 192 (404)
Q Consensus 147 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 192 (404)
..+-++.+...++.|++.....-+++|.+.+++..|.++++-.+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555556667788888888888888888888888888877644
No 362
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=67.27 E-value=7.3 Score=29.20 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=16.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHh
Q 015590 352 KLVEDVDWVLKKMVQQGFVPRMGMWREIVGC 382 (404)
Q Consensus 352 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 382 (404)
|.-..|..+|.+|++.|-.|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 344455666666666666665 35555543
No 363
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.03 E-value=29 Score=28.16 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=13.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015590 300 YPNSASYQEVLYGLLDKKRFPEAKELVGRMI 330 (404)
Q Consensus 300 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (404)
.|++.+|..++..+...|+.++|.+..+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 364
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=66.92 E-value=53 Score=29.24 Aligned_cols=86 Identities=13% Similarity=0.027 Sum_probs=48.2
Q ss_pred HHhhcCCHHHHHHHHhhcccCCCCc-cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH
Q 015590 137 YGNMAGRISKAIETLFDMPSYNCWP-SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLE 215 (404)
Q Consensus 137 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 215 (404)
|.+ .|.+++|++.|..-.... | |.+++..-..+|.+...+..|+.=....+... ..-...|..-+.+-...|...
T Consensus 107 yFK-QgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 107 YFK-QGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhh-ccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 444 788888888887766643 5 77777777777888777776666555554332 111222333333333334445
Q ss_pred HHHHHHHHchh
Q 015590 216 AAFYVLDEFPK 226 (404)
Q Consensus 216 ~a~~~~~~~~~ 226 (404)
+|.+=.+...+
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 55444444443
No 365
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.89 E-value=41 Score=23.17 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=18.9
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 015590 280 KQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPE 321 (404)
Q Consensus 280 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 321 (404)
..|+.+.|.+++..+. +| +..|..+++++...|.-+-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhh
Confidence 4455556666665555 42 2245555555555554433
No 366
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.30 E-value=96 Score=27.23 Aligned_cols=42 Identities=12% Similarity=0.087 Sum_probs=19.6
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhhhh
Q 015590 360 VLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETVDS 401 (404)
Q Consensus 360 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 401 (404)
.|++++..=.+.++.+=..++.-|..+...+....+.+.|++
T Consensus 358 aFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 358 AFQKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHH
Confidence 344443332333444444555555555555555555555543
No 367
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.38 E-value=1.6e+02 Score=29.51 Aligned_cols=152 Identities=16% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHchhCCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 015590 205 LKGLCENGNLEAAFYVLDEFPKQNCEP---NVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQ 281 (404)
Q Consensus 205 i~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 281 (404)
++-+.+.+.+++|+...+..... .| -...+...|+.+.-.|++++|-.+.-.|... +..-|.--+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----------------CCCCCHHHHHHHH
Q 015590 282 GKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE----------------RMSPSFVSYKKLI 345 (404)
Q Consensus 282 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------------~~~p~~~~~~~li 345 (404)
++. ..++.-+.....+.++..|..++..|.. .+...-.++..+.... ...-+...-..|+
T Consensus 437 ~~l---~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQL---TDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred ccc---chhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Q ss_pred HHHHcCCChHHHHHHHHHHHH
Q 015590 346 HGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~m~~ 366 (404)
..|...++++.|..++-...+
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHccChHHHHHHHHhccC
No 368
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.26 E-value=1.5e+02 Score=29.24 Aligned_cols=21 Identities=33% Similarity=0.233 Sum_probs=10.5
Q ss_pred HHHHHH-hcCChHHHHHHHHHc
Q 015590 204 LLKGLC-ENGNLEAAFYVLDEF 224 (404)
Q Consensus 204 li~~~~-~~g~~~~a~~~~~~~ 224 (404)
+...+. ...+++.|+..+++.
T Consensus 65 la~iL~~eT~n~~~Ae~~L~k~ 86 (608)
T PF10345_consen 65 LASILLEETENLDLAETYLEKA 86 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 333333 445566666655544
No 369
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=64.15 E-value=1.1e+02 Score=27.42 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=32.8
Q ss_pred HHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 015590 62 LKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKV 119 (404)
Q Consensus 62 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 119 (404)
..+..+.|+++..-....... +-.++...+..+... +.++++++....+.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~---~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSN---EDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhcc---CCChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 457778888888555444442 113344445444433 78888888888877654
No 370
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=63.78 E-value=16 Score=18.09 Aligned_cols=25 Identities=8% Similarity=-0.090 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 341 YKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
|..+...+...|++++|...++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344445555555555555555544
No 371
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=63.76 E-value=29 Score=20.70 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=17.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015590 314 LDKKRFPEAKELVGRMICERMSPSFVSYKKLI 345 (404)
Q Consensus 314 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 345 (404)
.+.|-.+++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555556666665555555555555444
No 372
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.36 E-value=52 Score=26.35 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=23.6
Q ss_pred hHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 015590 214 LEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEG 263 (404)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 263 (404)
+++|...|+..... .|+..+|+.-+.... +|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 44555555555544 677777777666643 3556666665554
No 373
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.89 E-value=8 Score=29.00 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=15.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015590 246 KGNVEEAFGLLERMESEGIDADTVTFNILIS 276 (404)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 276 (404)
.|.-.+|..+|++|.++|-+|| .|+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 3444555566666666665554 3444443
No 374
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=61.82 E-value=1.2e+02 Score=27.10 Aligned_cols=26 Identities=12% Similarity=-0.106 Sum_probs=17.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC
Q 015590 309 VLYGLLDKKRFPEAKELVGRMICERM 334 (404)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~~~~ 334 (404)
+...+.++|..+.|..+++.+.+.++
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33344567888888888888777643
No 375
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.38 E-value=73 Score=24.51 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=28.2
Q ss_pred ChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 015590 302 NSASYQEVLYGLLDKKR-FPEAKELVGRMICERMSPSFVSYKKLIHGLCNQ 351 (404)
Q Consensus 302 ~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 351 (404)
+...|.+++.+.++..- --.+..+|.-+.+.+.+++...|..+|.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44456666666654444 334555556665555566666666666665544
No 376
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=61.30 E-value=1e+02 Score=26.07 Aligned_cols=138 Identities=16% Similarity=0.215 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015590 201 LNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRK 280 (404)
Q Consensus 201 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 280 (404)
..--+..|++.-++-.|...++.+. .| ..+- +-+--|.+..+..---++.+-....++.-+.....+++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIi----EP-IQSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKII----EP-IQSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhh----hh-HHhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 3345667777777776666666554 33 2222 22333455555444444454445555555555555544 345
Q ss_pred CCCHHHHHHHHHHHhhC-CC-----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015590 281 QGKVEEGMKLLERMKGK-GC-----------YPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGL 348 (404)
Q Consensus 281 ~g~~~~a~~~~~~m~~~-~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 348 (404)
.|+...|+.-++.-... |. .|.+.....++..|. .+++++|.+++.++-+.|..|... .+.+.+++
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 68888887777765543 32 355556666666544 356788888888877777666432 23344443
No 377
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=61.19 E-value=88 Score=25.39 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHcCC--------------CCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 015590 167 NLVLNLLVSAKLYGEIQGIYTSAAKLGV--------------EIDACCLNILLKGLCENGNLEAAFYVLD 222 (404)
Q Consensus 167 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~--------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 222 (404)
.+++-.|-+..+|.++.++++.|.+..+ .+--...|.-...+.+.|.+|.|..+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3455566677777777777777654432 1223345556666666666666666665
No 378
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=61.06 E-value=1.1e+02 Score=26.60 Aligned_cols=96 Identities=11% Similarity=0.088 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CCCCChhhHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----
Q 015590 268 TVTFNILISGLRKQGKVEEGMKLLERMKGK----GCYPNSASYQ-EVLYGLLDKKRFPEAKELVGRMICERMSPSF---- 338 (404)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---- 338 (404)
...+..+...|++.++.+.+.++.++..+. |.+.|..... .|.-.|....-+++-++..+.|.++|-..+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 455666777777777777776666554433 4444432211 1222233334456666677777766644332
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 339 VSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 339 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
.+|..+- +....++.+|-.++.+..
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 2333222 222345666666665544
No 379
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=60.81 E-value=1.2e+02 Score=26.90 Aligned_cols=133 Identities=15% Similarity=0.088 Sum_probs=74.3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CCCCChh
Q 015590 230 EPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE-GIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK----GCYPNSA 304 (404)
Q Consensus 230 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~ 304 (404)
..|..-++.|..+ +..+.++-.+..++..+. |-.--...+-.....||+.|+.+.|++.+++..+. |.+.|..
T Consensus 67 ~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVv 144 (393)
T KOG0687|consen 67 KLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVV 144 (393)
T ss_pred eccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhH
Confidence 4455555554432 222334444444444433 21112345666778889999999998888776544 6666665
Q ss_pred hHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 305 SYQEVLY-GLLDKKRFPEAKELVGRMICERMSPSF----VSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 305 ~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
.+.+=+. .|....-+.+-++..+.+.+.|-..+. .+|..+- |....++.+|-.+|-+...
T Consensus 145 f~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 145 FYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 5443333 244444455666666667676654443 3444432 3345678888888876653
No 380
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=60.70 E-value=1.6e+02 Score=28.12 Aligned_cols=182 Identities=9% Similarity=0.087 Sum_probs=131.3
Q ss_pred CCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHH
Q 015590 123 CRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLN 202 (404)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 202 (404)
.+.++.....++..+.. +..+.-+..+-.+|...| -+...|..++.+|... ..++-..+++++.+..+ .|++.-.
T Consensus 62 ~~l~d~~l~~~~~~f~~-n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~R 136 (711)
T COG1747 62 QLLDDSCLVTLLTIFGD-NHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGR 136 (711)
T ss_pred ccccchHHHHHHHHhcc-chHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHH
Confidence 44566677777777777 888899999999999876 6778899999999888 66778889998888754 3455555
Q ss_pred HHHHHHHhcCChHHHHHHHHHchhCCCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 015590 203 ILLKGLCENGNLEAAFYVLDEFPKQNCEPN-----VRTYSTLMHGLCEKGNVEEAFGLLERMESE-GIDADTVTFNILIS 276 (404)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~ 276 (404)
.|...|-+ ++.+++...|.....+=++.. ...|.-+...- ..+.+..+.+..+++.. |...-.+.+.-+-.
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 56666655 888999899988765433211 22455555421 35678888888887654 55556677777778
Q ss_pred HHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 015590 277 GLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGL 313 (404)
Q Consensus 277 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 313 (404)
-|....++++|++++..+.+..- -|.-.-..++.-+
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~l 249 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDE-KDVWARKEIIENL 249 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHH
Confidence 89999999999999999988752 2444445555544
No 381
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=59.10 E-value=1.2e+02 Score=26.35 Aligned_cols=149 Identities=13% Similarity=0.067 Sum_probs=75.8
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHh----cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cC
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVS----AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCE----NG 212 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g 212 (404)
.+++..+...+......+ +......+...+.. ..+..+|.++|...-+.|.+ .....|..+|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCccc
Confidence 678888888888877644 22333334444433 34567788888876666532 233335555544 33
Q ss_pred ChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----C
Q 015590 213 NLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKG-------NVEEAFGLLERMESEGIDADTVTFNILISGLRK----Q 281 (404)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~ 281 (404)
+..+|..+|....+.|..+...+...+-..|..-. +...|...|.+....+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 67777777777777763332222333333333321 1224555555555544 22233333333322 2
Q ss_pred CCHHHHHHHHHHHhhCC
Q 015590 282 GKVEEGMKLLERMKGKG 298 (404)
Q Consensus 282 g~~~~a~~~~~~m~~~~ 298 (404)
.+.++|...|....+.|
T Consensus 205 ~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 205 RDLKKAFRWYKKAAEQG 221 (292)
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 24455555555555544
No 382
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=58.83 E-value=1.3e+02 Score=26.51 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=9.6
Q ss_pred HHHHHHHHHHcCCChHH
Q 015590 340 SYKKLIHGLCNQKLVED 356 (404)
Q Consensus 340 ~~~~li~~~~~~g~~~~ 356 (404)
+|..|+.+++..|+.+-
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45556666666665443
No 383
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.39 E-value=24 Score=21.64 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=9.8
Q ss_pred HHHHcCCChHHHHHHHHHHH
Q 015590 346 HGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~m~ 365 (404)
-++.+.|++++|.+..+.+.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL 28 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALL 28 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 34445555555555555555
No 384
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.12 E-value=84 Score=24.18 Aligned_cols=43 Identities=23% Similarity=0.139 Sum_probs=17.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 015590 309 VLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQ 351 (404)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 351 (404)
++..+.+.++.-.|.++++++.+.+...+..|.-..++.+...
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 3344444444444444444444443333333333333333333
No 385
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.01 E-value=69 Score=23.17 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhh
Q 015590 271 FNILISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 271 ~~~li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
|..|+.-|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555555544
No 386
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=57.69 E-value=90 Score=30.61 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHcCCCHH------HHHHHHHHHhhCCCCCChhhHHHH
Q 015590 238 TLMHGLCEKGNVEEAFGLLERMESE--GIDADTVTFNILISGLRKQGKVE------EGMKLLERMKGKGCYPNSASYQEV 309 (404)
Q Consensus 238 ~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~l 309 (404)
++..+|..+|++..+.++++.+... |-+.=...||..|+...+.|.++ .|.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999988654 33333567888899999999764 3444444444 34478889888
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 015590 310 LYGLLDKKRFPEAKELVGRMI 330 (404)
Q Consensus 310 i~~~~~~g~~~~a~~~~~~~~ 330 (404)
+.+-..--+-.-..-++.+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 877655333333334444444
No 387
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.59 E-value=1.6e+02 Score=27.23 Aligned_cols=215 Identities=13% Similarity=0.003 Sum_probs=95.9
Q ss_pred HHhcCCChhHHHHHHHHHhhCCCCCCCHHH--HHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhc
Q 015590 64 IFSNLRDPISVISVLNQYSKRKDYNPNEAL--YTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMA 141 (404)
Q Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (404)
...+.|+.+.+..+++ .|..|+... ..+.+...+..|+.+-+.-+++.-.... ..+......+..... .
T Consensus 8 ~A~~~g~~~iv~~Ll~-----~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~---~~~~~~~t~L~~A~~-~ 78 (413)
T PHA02875 8 DAILFGELDIARRLLD-----IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD---VKYPDIESELHDAVE-E 78 (413)
T ss_pred HHHHhCCHHHHHHHHH-----CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc---ccCCCcccHHHHHHH-C
Confidence 3345566665555443 234443321 2334455566777765544444311000 001111223333444 7
Q ss_pred CCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhH--HHHHHHHHHhcCChHHHHH
Q 015590 142 GRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACC--LNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 142 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~ 219 (404)
|+.+.+..+++.-....-..+... .+.+...+..|+.+ +.+.+.+.|..|+... -.+.+...+..|+.+-+..
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 888877777654322110011111 12233344556553 4445556665554321 1234445556777766655
Q ss_pred HHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHHhh
Q 015590 220 VLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVT---FNILISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
+++.-...+ ..|..-++.+.. .+..|+.+ +.+.+.+.|..|+... ..+++...+..|+.+-+ +-+.+
T Consensus 154 Ll~~g~~~~-~~d~~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv----~~Ll~ 223 (413)
T PHA02875 154 LIDHKACLD-IEDCCGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV----RLFIK 223 (413)
T ss_pred HHhcCCCCC-CCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH----HHHHH
Confidence 554322111 112222333333 34456544 3444556666655432 12344444556666543 34444
Q ss_pred CCCCCC
Q 015590 297 KGCYPN 302 (404)
Q Consensus 297 ~~~~p~ 302 (404)
.|..++
T Consensus 224 ~gad~n 229 (413)
T PHA02875 224 RGADCN 229 (413)
T ss_pred CCcCcc
Confidence 555554
No 388
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.57 E-value=85 Score=23.44 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHH
Q 015590 126 SDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTS 188 (404)
Q Consensus 126 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 188 (404)
++.-+..+-..+..... .+.++|..|...|+-.. +..|......+...|++++|.++|+.
T Consensus 64 nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 64 NDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp T-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34444455555544222 66666666666544333 34566666666677777777777654
No 389
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.01 E-value=1.5e+02 Score=25.84 Aligned_cols=205 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHhhcccCCCCccH-------HHHHHHHHHHHhcCcHhHHHHHHHH----HHHcCCCCCHhHHHHHHHHH
Q 015590 140 MAGRISKAIETLFDMPSYNCWPSV-------KTFNLVLNLLVSAKLYGEIQGIYTS----AAKLGVEIDACCLNILLKGL 208 (404)
Q Consensus 140 ~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li~~~ 208 (404)
+.+++++|...+.+....|+..|. .+...+...|...|++....+.... |....-+....+..+|+..+
T Consensus 15 ~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf 94 (421)
T COG5159 15 KSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKF 94 (421)
T ss_pred hhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhc
Q ss_pred HhcCC-hHHHHHHHHHchhCCCCCcHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH-HHH
Q 015590 209 CENGN-LEAAFYVLDEFPKQNCEPNVRTYST-----LMHGLCEKGNVEEAFGLLERMESE----GIDADTVTFNIL-ISG 277 (404)
Q Consensus 209 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~~~~~~A~~~~~~m~~~----~~~p~~~~~~~l-i~~ 277 (404)
....+ ++...++.....+...+-....... ++..+.+.|.+.+|+.+...+... .-+|+..+...+ -.+
T Consensus 95 ~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKv 174 (421)
T COG5159 95 PYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKV 174 (421)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHH
Q ss_pred HHcCCCHHHHHHHHHHHhhC----CCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHH
Q 015590 278 LRKQGKVEEGMKLLERMKGK----GCYPNSASYQEVLYG--LLDKKRFPEAKELVGRMICE--RMSPSFVSYKKL 344 (404)
Q Consensus 278 ~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l 344 (404)
|-...+..++..-+...+.. =++|-...---|+++ .|.-.++..|..+|-+..+. ....|.....++
T Consensus 175 yh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sL 249 (421)
T COG5159 175 YHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSL 249 (421)
T ss_pred HHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHH
No 390
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.75 E-value=71 Score=22.03 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=6.7
Q ss_pred CChHHHHHHHHHch
Q 015590 212 GNLEAAFYVLDEFP 225 (404)
Q Consensus 212 g~~~~a~~~~~~~~ 225 (404)
|+.+.|..++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 391
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=52.71 E-value=55 Score=23.75 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=19.6
Q ss_pred HHHHHHhcCChHHHHHHHHHchhCCCCCcHH
Q 015590 204 LLKGLCENGNLEAAFYVLDEFPKQNCEPNVR 234 (404)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 234 (404)
+++..-+|...++|+++++.|.++| ..+..
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e 96 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPE 96 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 4566667777777777777777766 44433
No 392
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=52.52 E-value=1.3e+02 Score=26.31 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=14.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHH
Q 015590 301 PNSASYQEVLYGLLDKKRFPEAK 323 (404)
Q Consensus 301 p~~~~~~~li~~~~~~g~~~~a~ 323 (404)
.|+..|..++.+|.-.|+...+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 46667777777777666655444
No 393
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.17 E-value=2.8e+02 Score=28.42 Aligned_cols=79 Identities=11% Similarity=-0.093 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhh
Q 015590 320 PEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETV 399 (404)
Q Consensus 320 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 399 (404)
..+...++-....-...+...+|.++..|++..+- .....++.....+-. ...-...-++.|...+..+.++.++-+|
T Consensus 610 ~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~-~ll~~le~~~~~~~~-~~YDl~~alRlc~~~~~~ra~V~l~~~l 687 (911)
T KOG2034|consen 610 NQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERD-DLLLYLEIIKFMKSR-VHYDLDYALRLCLKFKKTRACVFLLCML 687 (911)
T ss_pred HHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCcc-chHHHHHHHhhcccc-ceecHHHHHHHHHHhCccceeeeHHHHH
Confidence 34444444443332345667777777777765442 223333322211111 2223344556666677766666666555
Q ss_pred h
Q 015590 400 D 400 (404)
Q Consensus 400 ~ 400 (404)
+
T Consensus 688 ~ 688 (911)
T KOG2034|consen 688 N 688 (911)
T ss_pred H
Confidence 4
No 394
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.00 E-value=34 Score=29.84 Aligned_cols=30 Identities=10% Similarity=0.106 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 015590 306 YQEVLYGLLDKKRFPEAKELVGRMICERMS 335 (404)
Q Consensus 306 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 335 (404)
|+.-|....+.||+++|++++++.++.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555543
No 395
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.94 E-value=35 Score=29.77 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 015590 236 YSTLMHGLCEKGNVEEAFGLLERMESEGID 265 (404)
Q Consensus 236 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 265 (404)
|+.-|....+.||.++|+.++++.+..|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555566666666666666666655544
No 396
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=51.37 E-value=2.8e+02 Score=28.18 Aligned_cols=45 Identities=2% Similarity=0.021 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhh-------CCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 015590 72 ISVISVLNQYSK-------RKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIK 118 (404)
Q Consensus 72 ~~a~~~~~~~~~-------~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 118 (404)
++...+++.... ..++.-+..+...++... .|+..++..+++.+.
T Consensus 171 edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~ 222 (725)
T PRK13341 171 EDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAV 222 (725)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 444445555443 234555566666665533 677777777777643
No 397
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=51.16 E-value=3.1e+02 Score=28.56 Aligned_cols=81 Identities=12% Similarity=-0.056 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 015590 284 VEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE-RMSPSFVSYKKLIHGLCNQKLVEDVDWVLK 362 (404)
Q Consensus 284 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 362 (404)
.+.-.+.|.++..---.-|..++..-..-+...|++..|.+++.++.+. |-.++...|.-++..+...| |.....+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg-w~H~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG-WNHLATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC-chHhHHHHh
Confidence 3444555555544311225556665566666777888888888777653 45666666666666666666 334444444
Q ss_pred HHH
Q 015590 363 KMV 365 (404)
Q Consensus 363 ~m~ 365 (404)
.+.
T Consensus 1291 ~~~ 1293 (1304)
T KOG1114|consen 1291 NWM 1293 (1304)
T ss_pred hhe
Confidence 443
No 398
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.20 E-value=1.3e+02 Score=24.19 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=16.0
Q ss_pred HHHHHHhcCChHHHHHHHHHchh
Q 015590 204 LLKGLCENGNLEAAFYVLDEFPK 226 (404)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~~~~ 226 (404)
.+-.|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 44567777777777777777665
No 399
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=49.07 E-value=2e+02 Score=25.73 Aligned_cols=192 Identities=16% Similarity=0.122 Sum_probs=95.3
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCC---CC-ccHHHHHHHHHH
Q 015590 97 IINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYN---CW-PSVKTFNLVLNL 172 (404)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~-p~~~~~~~ll~~ 172 (404)
...+..+.|+|+...+......... ++..++..+... . .|+++++....++....- +. .....|......
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~----~~~~~~~al~~l-~-~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~ 77 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDS----PEYSFYRALLAL-R-QGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPS 77 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCC----hhHHHHHHHHHH-h-CccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4567788899998666666553221 245555666655 3 788888888887765421 00 112234444444
Q ss_pred HHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-----cCChHHHHHHH---HHchh--CCCCCcHHHHHHHHHH
Q 015590 173 LVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCE-----NGNLEAAFYVL---DEFPK--QNCEPNVRTYSTLMHG 242 (404)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-----~g~~~~a~~~~---~~~~~--~~~~~~~~~~~~li~~ 242 (404)
..+...+.+..++.+...... .+......++..+.. ..+++.-..++ ..+.. ........+|..++..
T Consensus 78 l~~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 78 LVKLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred HHHHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 444445555555554443221 112223333332221 12222222111 11111 0012334456666677
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 015590 243 LCEKGNVEEAFGLLERMESEGIDA---DTVTFNILISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
+.+.|+++.|...+..+...+... ++.....-....-..|+..+|...+++...
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777666543111 222333334444556666777777666665
No 400
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=49.01 E-value=2.6e+02 Score=27.12 Aligned_cols=103 Identities=20% Similarity=0.159 Sum_probs=67.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcCCCHHHHH---HHHHHHhhCCCCCChhhHHHHHHHH-----Hh
Q 015590 245 EKGNVEEAFGLLERMESEGIDADTVTF-NILISGLRKQGKVEEGM---KLLERMKGKGCYPNSASYQEVLYGL-----LD 315 (404)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~---~~~~~m~~~~~~p~~~~~~~li~~~-----~~ 315 (404)
.+|+...|..+++.+...- |+.+-- ..-+....+.|+.+.+. .++........ +......+.--+ .-
T Consensus 378 ~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKI 453 (577)
T ss_pred hhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHH
Confidence 4678999999999988763 544322 22345566788888887 44444443321 222333222222 23
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 015590 316 KKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQK 352 (404)
Q Consensus 316 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 352 (404)
.++.+.|..++.++.+. .+++...|..+++.+...+
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 57899999999999876 6778888888888777665
No 401
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.29 E-value=3e+02 Score=27.72 Aligned_cols=132 Identities=13% Similarity=0.142 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCCc---hHHHHHHHHHHhcc--cCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHH--
Q 015590 92 ALYTLIINKLAQAKRF---DAIEDIMQRIKVEK--LCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVK-- 164 (404)
Q Consensus 92 ~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-- 164 (404)
+.-...++-..++++. ++....+.+|+.+- .......++.+++..|-. ..+++...++.+.++.. ||..
T Consensus 161 h~REkflsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRD-vQdY~amirLVe~Lk~i---P~t~~v 236 (1226)
T KOG4279|consen 161 HSREKFLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRD-VQDYDAMIRLVEDLKRI---PDTLKV 236 (1226)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhcc-ccchHHHHHHHHHHHhC---cchhhh
Confidence 3334444444444432 33444555665442 111234456667777666 77888888888877663 4321
Q ss_pred --------HHHHHHHHHHhcCcHhHHHHHHHHHHHcC--CCCCHhHHH-----H--HHHHHHhcCChHHHHHHHHHchhC
Q 015590 165 --------TFNLVLNLLVSAKLYGEIQGIYTSAAKLG--VEIDACCLN-----I--LLKGLCENGNLEAAFYVLDEFPKQ 227 (404)
Q Consensus 165 --------~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~-----~--li~~~~~~g~~~~a~~~~~~~~~~ 227 (404)
.|...++-=-+.|+-++|+...-.+.+.. +.||..... - +-+.|...+..+.|.++|.+..+.
T Consensus 237 ve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 237 VETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred hccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 22333333345567777777666665542 334432211 1 111223334455666666655543
No 402
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.20 E-value=98 Score=26.35 Aligned_cols=82 Identities=12% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHcCCChHHHH
Q 015590 284 VEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE-----RMSPSFVSYKKLIHGLCNQKLVEDVD 358 (404)
Q Consensus 284 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~ 358 (404)
.+.|...|...... +--...-..+...|.+.|++++|.++|+.+... =..+...+...+..++.+.|+.+...
T Consensus 161 L~~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 161 LEKAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Q ss_pred HHHHHHHHC
Q 015590 359 WVLKKMVQQ 367 (404)
Q Consensus 359 ~~~~~m~~~ 367 (404)
.+.=++...
T Consensus 239 ~~~leLls~ 247 (247)
T PF11817_consen 239 TTSLELLSR 247 (247)
T ss_pred HHHHHHhcC
No 403
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.13 E-value=1.5e+02 Score=24.19 Aligned_cols=128 Identities=8% Similarity=0.050 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHH----
Q 015590 234 RTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFN--ILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQ---- 307 (404)
Q Consensus 234 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~---- 307 (404)
..|..++.... .+.+ +.....+++......-.-.++. .+...+..+|++++|+.-++..... |....+.
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Confidence 34555555433 3333 4444455555442111111222 2345566778888888888776654 1222332
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 015590 308 -EVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQG 368 (404)
Q Consensus 308 -~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 368 (404)
.|.......|.+++|+..++...+.++.+ .....-.+.+...|+-++|+.-|++..+.+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 33445666788888888888776543211 122233467888888888888888887765
No 404
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.80 E-value=71 Score=21.55 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=16.4
Q ss_pred HHHHHHhcCChHHHHHHHHHchhCC
Q 015590 204 LLKGLCENGNLEAAFYVLDEFPKQN 228 (404)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~~~~~~ 228 (404)
+++.+.+|.-.++|+++++.+.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4555666666667777777666666
No 405
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.34 E-value=2e+02 Score=25.43 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH----------cCCHHHH
Q 015590 183 QGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE----------KGNVEEA 252 (404)
Q Consensus 183 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~~~~~~A 252 (404)
.++|+.+...++.|.-+++.-+.-.+...=.+.++..+|+.+... ..-|..++..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 457778888888888888887777778888888888888888742 2225555554443 5777776
Q ss_pred HHHHHH
Q 015590 253 FGLLER 258 (404)
Q Consensus 253 ~~~~~~ 258 (404)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666544
No 406
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.06 E-value=2e+02 Score=25.36 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=18.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 015590 254 GLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMK 295 (404)
Q Consensus 254 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 295 (404)
++++.|...++.|.-..|.-+.-.+.+.=.+.++..+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444444444444444333333444444444444444444
No 407
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.73 E-value=1.5e+02 Score=23.48 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=40.3
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 015590 259 MESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPE 321 (404)
Q Consensus 259 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 321 (404)
+...|++++..-. .++..+...++.-.|.++++.+.+.+..++..|.-.-|..+.+.|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 4556776554433 4445554555666788888888887766676666666677777776544
No 408
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.66 E-value=1.1e+02 Score=23.47 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=28.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 015590 257 ERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKK 317 (404)
Q Consensus 257 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 317 (404)
+.+.+.|.+++.. -..++..+...++.-.|.++++++.+.+...+..|.-.-++.+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555554332 22344444545444566666666666544444444333344444444
No 409
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=45.56 E-value=3.3e+02 Score=27.40 Aligned_cols=85 Identities=7% Similarity=0.040 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCC------------ChHHHHHHHHHHH
Q 015590 71 PISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRF------------SDGFFYNVIKIYG 138 (404)
Q Consensus 71 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~ 138 (404)
.++....+.+..+..|+..+......++... .|++..+..+++.+...+.... +...++.++..+.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 3455566666666667777777666666543 4777777777766543221111 1122333333333
Q ss_pred hhcCCHHHHHHHHhhcccCCC
Q 015590 139 NMAGRISKAIETLFDMPSYNC 159 (404)
Q Consensus 139 ~~~g~~~~A~~~~~~m~~~~~ 159 (404)
.++...++.+++++...|.
T Consensus 258 --~~d~~~al~~l~~L~~~G~ 276 (709)
T PRK08691 258 --NQDGAALLAKAQEMAACAV 276 (709)
T ss_pred --cCCHHHHHHHHHHHHHhCC
Confidence 4666777777777766664
No 410
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=45.24 E-value=43 Score=17.03 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=4.9
Q ss_pred hHHHHHHHHHch
Q 015590 214 LEAAFYVLDEFP 225 (404)
Q Consensus 214 ~~~a~~~~~~~~ 225 (404)
.+.|..+|+.+.
T Consensus 3 ~~~~r~i~e~~l 14 (33)
T smart00386 3 IERARKIYERAL 14 (33)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 411
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.77 E-value=1.4e+02 Score=29.46 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=65.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChh------HHHHHHHHHHHCCCCCCHHHHHHH
Q 015590 273 ILISGLRKQGKVEEGMKLLERMKGK--GCYPNSASYQEVLYGLLDKKRFP------EAKELVGRMICERMSPSFVSYKKL 344 (404)
Q Consensus 273 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~p~~~~~~~l 344 (404)
+|+.+|...|++..+.++++..... |-+.-...||..|..+.+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999998776 33334567888888888888764 3444444444 56678888888
Q ss_pred HHHHHcCCChHHHHHHHHHHHH
Q 015590 345 IHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 345 i~~~~~~g~~~~a~~~~~~m~~ 366 (404)
+++-...-.-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776665555555566666554
No 412
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.66 E-value=1.3e+02 Score=22.44 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 015590 181 EIQGIYTSAAKLGVEI-DACCLNILLKGLCENGNLEAAFYVLDE 223 (404)
Q Consensus 181 ~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 223 (404)
.+.++|..|...|+.. -+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888888877643 455677778888888888888888764
No 413
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=44.52 E-value=82 Score=20.34 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 015590 161 PSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGL 208 (404)
Q Consensus 161 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 208 (404)
|+...++.++..+++..-.++++..+.+..+.|. .+..+|---++.+
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 4444555556665555556666666666655552 3334443333333
No 414
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.28 E-value=2.6e+02 Score=26.57 Aligned_cols=107 Identities=17% Similarity=0.025 Sum_probs=66.6
Q ss_pred HHHHcCCHHHHHHHHHHHH---HCCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhh-------CCCCCC----
Q 015590 242 GLCEKGNVEEAFGLLERME---SEGIDAD-----TVTFNILISGLRKQGKVEEGMKLLERMKG-------KGCYPN---- 302 (404)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~---~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~~~~p~---- 302 (404)
-+.-.|++.+|.+++...- ..|...+ -..||.|.-.+.+.|.+..+..+|.+..+ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3455788888888775542 1221111 12345555555666666666666665543 354442
Q ss_pred -------hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015590 303 -------SASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCN 350 (404)
Q Consensus 303 -------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 350 (404)
..+||+=+ .|...|++-.|.+.|.+...- +..++..|-.+..+|..
T Consensus 329 ls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 23455444 367789999999999888754 56788889988888864
No 415
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=43.33 E-value=3.1e+02 Score=26.42 Aligned_cols=31 Identities=3% Similarity=0.064 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC
Q 015590 166 FNLVLNLLVSAKLYGEIQGIYTSAAKLGVEID 197 (404)
Q Consensus 166 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 197 (404)
.-.++.+.. .|+..+|..+++++...|..|.
T Consensus 261 if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 261 IIEFVEYII-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 333444433 3667777777777777765543
No 416
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.13 E-value=3.6e+02 Score=27.14 Aligned_cols=187 Identities=14% Similarity=0.072 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHH
Q 015590 71 PISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIET 150 (404)
Q Consensus 71 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 150 (404)
..+.+...+.+.+...++.....--.+-+.|...|++++|..+--.....-...+.+.....++. -|. ..-.+.+.+.
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etiva-k~i-d~yi~~~~~~ 116 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVA-KCI-DMYIETASET 116 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHH-HHH-HHHHHHHHHH
Confidence 34555666666555544322222233446778889999888776544211111122222222332 222 2334556666
Q ss_pred Hhhcc-cCCCCccH-HHHHHHHHHHHhcCcHhHHHHHHHHHHHcC------C--CCCHhHHHHHHHHHHhcCC-hHHHHH
Q 015590 151 LFDMP-SYNCWPSV-KTFNLVLNLLVSAKLYGEIQGIYTSAAKLG------V--EIDACCLNILLKGLCENGN-LEAAFY 219 (404)
Q Consensus 151 ~~~m~-~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~--~~~~~~~~~li~~~~~~g~-~~~a~~ 219 (404)
++.-. ..++.+.. ...+-++..|...+++..|+.+.-+..+.+ + ..+....+.+++.+....+ -+--.+
T Consensus 117 ~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~ 196 (929)
T KOG2062|consen 117 YKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNK 196 (929)
T ss_pred hcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHH
Confidence 66433 23333332 245667777777777666655432221111 1 1222344444444443333 222233
Q ss_pred HHHHchhC---CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 220 VLDEFPKQ---NCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 220 ~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
++..+.+. ...|| |..+..+|.-..+.+.+.++++++.+.
T Consensus 197 vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 197 VLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 33333221 11454 455777888888999999999998874
No 417
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.93 E-value=3.1e+02 Score=26.19 Aligned_cols=86 Identities=5% Similarity=-0.104 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH------HHHHHHHHchhCCCCCcHHH--H
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLE------AAFYVLDEFPKQNCEPNVRT--Y 236 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~--~ 236 (404)
....++.+. +.++++.|..++.+|...|..|....-..+..++-.-|.-+ -+...++...+-|.+-.... .
T Consensus 246 ~i~~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~l~~ 324 (472)
T PRK14962 246 VVRDYINAI-FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRLVCK 324 (472)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHHHHH
Confidence 333444443 55788888888888888876666554444444444444322 33444444555564433333 3
Q ss_pred HHHHHHHHHcCCHHH
Q 015590 237 STLMHGLCEKGNVEE 251 (404)
Q Consensus 237 ~~li~~~~~~~~~~~ 251 (404)
-.++..+......++
T Consensus 325 ~~~~~~~~~~~~~~~ 339 (472)
T PRK14962 325 LGSASIATRFSSPNV 339 (472)
T ss_pred HHHHHHHHhCCChhH
Confidence 333444444334433
No 418
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=42.75 E-value=44 Score=21.56 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=23.9
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH
Q 015590 196 IDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE 245 (404)
Q Consensus 196 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 245 (404)
|+...++.++..+++-.-++++...+.+....| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555 3444444444444433
No 419
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.58 E-value=1.3e+02 Score=21.77 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHch
Q 015590 201 LNILLKGLCENGNLEAAFYVLDEFP 225 (404)
Q Consensus 201 ~~~li~~~~~~g~~~~a~~~~~~~~ 225 (404)
|..|+..|...|..++|.+++.++.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 4444444444444444444444443
No 420
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=42.32 E-value=3.4e+02 Score=26.54 Aligned_cols=98 Identities=15% Similarity=-0.059 Sum_probs=53.8
Q ss_pred cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 015590 176 AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGL 255 (404)
Q Consensus 176 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 255 (404)
.|+...|...+.........-..+....|.+...+.|-..+|-.++.+..... .....++-.+.++|....+.++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 46666666666555433211122233345555555666666666666555443 33444556666777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHH
Q 015590 256 LERMESEGIDADTVTFNILI 275 (404)
Q Consensus 256 ~~~m~~~~~~p~~~~~~~li 275 (404)
|++..+...+ +.+.-+.|.
T Consensus 699 ~~~a~~~~~~-~~~~~~~l~ 717 (886)
T KOG4507|consen 699 FRQALKLTTK-CPECENSLK 717 (886)
T ss_pred HHHHHhcCCC-ChhhHHHHH
Confidence 7776665333 333434443
No 421
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.11 E-value=2.7e+02 Score=25.36 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC
Q 015590 161 PSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEID 197 (404)
Q Consensus 161 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 197 (404)
++......++.+.. .++...+..+++++.+.|..|.
T Consensus 244 ~~~~~i~~l~~ai~-~~~~~~~~~~~~~l~~~g~~~~ 279 (363)
T PRK14961 244 LNEKQSFLLTDALL-KKDSKKTMLLLNKISSIGIEWE 279 (363)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 34444455666554 4788999999999998875554
No 422
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=41.75 E-value=2.3e+02 Score=24.40 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred HhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccC----CCCccHHHHHHHHHHHHhcC
Q 015590 102 AQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSY----NCWPSVKTFNLVLNLLVSAK 177 (404)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~ 177 (404)
.+.+++++|.+++.. ....+.+ .|+..-|-++-.-+.+. +.++|......++..+...+
T Consensus 1 v~~kky~eAidLL~~----------------Ga~~ll~-~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~ 63 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYS----------------GALILLK-HGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFP 63 (260)
T ss_dssp HHTT-HHHHHHHHHH----------------HHHHHHH-TT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-
T ss_pred CccccHHHHHHHHHH----------------HHHHHHH-CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q ss_pred cHh-HHHHHHHHHHHcCCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHH
Q 015590 178 LYG-EIQGIYTSAAKLGVE------IDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVE 250 (404)
Q Consensus 178 ~~~-~a~~~~~~~~~~g~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 250 (404)
.-+ .-.++.+.+.+.. . -|+.....+...|.+.|++.+|+..|-.-. .++...+..++.-....|...
T Consensus 64 ~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~ 138 (260)
T PF04190_consen 64 PEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPS 138 (260)
T ss_dssp TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS-
T ss_pred CCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCc
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 015590 251 EAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 251 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
++ ..-....+-.|...++...|...++...+
T Consensus 139 e~---------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 139 EA---------------DLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp -H---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ch---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHH
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.70 E-value=1.2e+02 Score=21.10 Aligned_cols=55 Identities=7% Similarity=0.027 Sum_probs=29.0
Q ss_pred HhcCCChhHHHHHHHHHhhCCC--CCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 015590 65 FSNLRDPISVISVLNQYSKRKD--YNPN-----EALYTLIINKLAQAKRFDAIEDIMQRIKV 119 (404)
Q Consensus 65 ~~~~~~~~~a~~~~~~~~~~~~--~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 119 (404)
..+.|++..|++.+.++..... ..+. ......+.......|++++|...+++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456777777555444432111 1111 22233344555667777777777776543
No 424
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.59 E-value=1.5e+02 Score=22.19 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHH-HHHHHHHHHHhcCcHhHHHHH
Q 015590 107 FDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVK-TFNLVLNLLVSAKLYGEIQGI 185 (404)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~ 185 (404)
++++.+.|.....-. ++.-+..+-..+...+++ ..++|..|...|+-.... .|......+-..|++.+|.++
T Consensus 49 Lerc~~~f~~~~~Yk----nD~RyLkiWi~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~i 121 (125)
T smart00777 49 LERCIRYFEDDERYK----NDPRYLKIWLKYADNCDE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEV 121 (125)
T ss_pred HHHHHHHhhhhhhhc----CCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Q ss_pred HH
Q 015590 186 YT 187 (404)
Q Consensus 186 ~~ 187 (404)
|+
T Consensus 122 y~ 123 (125)
T smart00777 122 YQ 123 (125)
T ss_pred HH
No 425
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.27 E-value=1.1e+02 Score=22.21 Aligned_cols=33 Identities=21% Similarity=-0.014 Sum_probs=21.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 015590 309 VLYGLLDKKRFPEAKELVGRMICERMSPSFVSYK 342 (404)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 342 (404)
+++.+.++...++|+++++.|.+.| ..+...-+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~ 99 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAK 99 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4666677777788888888887776 34443333
No 426
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.26 E-value=1.3e+02 Score=21.55 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=9.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 015590 239 LMHGLCEKGNVEEAFGLLERM 259 (404)
Q Consensus 239 li~~~~~~~~~~~A~~~~~~m 259 (404)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555555544443
No 427
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=41.25 E-value=3.9e+02 Score=26.95 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=27.2
Q ss_pred HHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 015590 250 EEAFGLLERM-ESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 250 ~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
++....+... .+.|+..+......+++.. .|++..+..+++.+..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 4444444443 3456666666666666544 4778888877776654
No 428
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.84 E-value=2.4e+02 Score=24.40 Aligned_cols=185 Identities=14% Similarity=0.120 Sum_probs=96.4
Q ss_pred hcCCchHHHHHHHHHHhcccC--CCChHHHHHHHHHHHhhcCCHHHHHHHHhhccc---CCCC--ccHHHHHHHHHHHHh
Q 015590 103 QAKRFDAIEDIMQRIKVEKLC--RFSDGFFYNVIKIYGNMAGRISKAIETLFDMPS---YNCW--PSVKTFNLVLNLLVS 175 (404)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~~~~--p~~~~~~~ll~~~~~ 175 (404)
+...+++|..-|+...+.... .+.-...-.++...++ .|++++..+.+.+|.. ..+. -+..+.|+++.-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~-l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR-LGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 344677777777776654411 1111123334555555 6777777777777642 1111 233456667766666
Q ss_pred cCcHhHHHHHHHHHHHc--CCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHchhCCC----CCc-------HHHHHHH
Q 015590 176 AKLYGEIQGIYTSAAKL--GVEID---ACCLNILLKGLCENGNLEAAFYVLDEFPKQNC----EPN-------VRTYSTL 239 (404)
Q Consensus 176 ~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~-------~~~~~~l 239 (404)
..+.+....+|+.-.+. .-+.+ -.|-+-|...|...|++.+..+++.++...-- ..| ...|..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 66666666666543321 00111 11234456667777777777777776654310 112 2346666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----HcCCCHHHHHH
Q 015590 240 MHGLCEKGNVEEAFGLLERMESE-GIDADTVTFNILISGL-----RKQGKVEEGMK 289 (404)
Q Consensus 240 i~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~-----~~~g~~~~a~~ 289 (404)
|..|....+-.+-..+|++...- ..-|.+.... +|+-| .+.|++++|-.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 66676666666666666655422 2223433333 23322 34566666643
No 429
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=40.53 E-value=1.2e+02 Score=20.87 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHch
Q 015590 184 GIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFP 225 (404)
Q Consensus 184 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 225 (404)
++|+-....|+..|..+|..+++..--+=-++....+++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666666666666666666655555566666666654
No 430
>PRK09462 fur ferric uptake regulator; Provisional
Probab=40.19 E-value=1.7e+02 Score=22.48 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=30.2
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 015590 258 RMESEGIDADTVTFNILISGLRKQ-GKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRF 319 (404)
Q Consensus 258 ~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 319 (404)
.+.+.|.+++..- ..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444555544332 2233333332 34556666666666665444555544445555555544
No 431
>PLN03025 replication factor C subunit; Provisional
Probab=39.85 E-value=2.7e+02 Score=24.73 Aligned_cols=33 Identities=6% Similarity=-0.027 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCH
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDA 198 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 198 (404)
....++..+ ..+++++|...+.++...|.+|..
T Consensus 227 ~i~~~i~~~-~~~~~~~a~~~l~~ll~~g~~~~~ 259 (319)
T PLN03025 227 HVKNIVRNC-LKGKFDDACDGLKQLYDLGYSPTD 259 (319)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 333444443 346677777777777776665543
No 432
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.79 E-value=2.6e+02 Score=24.51 Aligned_cols=69 Identities=14% Similarity=0.067 Sum_probs=45.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHcCCChHHHHHHHHHHHHCCCC
Q 015590 302 NSASYQEVLYGLLDKKRFPEAKELVGRMIC----ERMSPSFVSYKK-LIHGLCNQKLVEDVDWVLKKMVQQGFV 370 (404)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~ 370 (404)
-...+..+..-|++.++.+.+.+...+..+ .|.+.|....-+ +.-.|....-+++-.+..+.|.++|-.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 456788889999999999988887766554 366666543222 222344444467777888888877653
No 433
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.57 E-value=3.2e+02 Score=25.45 Aligned_cols=55 Identities=16% Similarity=0.054 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-----hhHHHHHHHHHHHCCCC
Q 015590 281 QGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKR-----FPEAKELVGRMICERMS 335 (404)
Q Consensus 281 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~ 335 (404)
.++.+.|+.++..|.+.|..|....-..++.++-..|. ...|...++....-|++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 46778888888888877776665554555545444442 23344555555555643
No 434
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=39.44 E-value=33 Score=18.48 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHH
Q 015590 353 LVEDVDWVLKKMVQQGFVPRMGMWREI 379 (404)
Q Consensus 353 ~~~~a~~~~~~m~~~~~~p~~~~~~~l 379 (404)
.++.|..+|+..+. +.|++.+|-..
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 46788888888874 45777776543
No 435
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.30 E-value=4.6e+02 Score=27.24 Aligned_cols=116 Identities=13% Similarity=0.073 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcccCC--CCcc-HHHHHHHHHHHHhcCcH--hHHHHHHHHHHHcCCCCCHhHH---
Q 015590 130 FYNVIKIYGNMAGRISKAIETLFDMPSYN--CWPS-VKTFNLVLNLLVSAKLY--GEIQGIYTSAAKLGVEIDACCL--- 201 (404)
Q Consensus 130 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~-~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~--- 201 (404)
+..++..|.. .|+.++|+++|.+..+.. ..+. ...+..++.-+.+.+.. +.+.++-+...+........++
T Consensus 507 y~~Li~LY~~-kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 507 YRELIELYAT-KGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred HHHHHHHHHh-ccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 4455555555 899999999999887632 1111 12344455555555544 5555555555443211111111
Q ss_pred ---------HHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc
Q 015590 202 ---------NILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK 246 (404)
Q Consensus 202 ---------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 246 (404)
...+-.|.+....+-+..+++.+....-.++..-.+.++..|++.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 123455778888999999999988766566777788888887653
No 436
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.29 E-value=1.3e+02 Score=20.88 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=10.0
Q ss_pred HHHcCCChHHHHHHHHHHHH
Q 015590 347 GLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~ 366 (404)
.....|+.++|...+++.++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 33444555555555555443
No 437
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.26 E-value=25 Score=31.21 Aligned_cols=93 Identities=16% Similarity=0.005 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhcCChHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDA-CCLNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~ 219 (404)
.|.+++|++.|...+..+ ++....|..-.+++.+.+.+..+++=++...+. .||. .-|-.--.+-.-.|+|++|..
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 688999999999888765 345556777777888888888888887777665 3443 223333334445688888888
Q ss_pred HHHHchhCCCCCcHHHH
Q 015590 220 VLDEFPKQNCEPNVRTY 236 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~ 236 (404)
.|....+.++.+....|
T Consensus 204 dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 204 DLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHhccccHHHHHH
Confidence 88888887765554443
No 438
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=39.07 E-value=4.8e+02 Score=27.39 Aligned_cols=254 Identities=12% Similarity=0.018 Sum_probs=149.7
Q ss_pred cchhhcccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCC
Q 015590 45 HHAYKLNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCR 124 (404)
Q Consensus 45 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 124 (404)
.+...+.++|...-...+..+.+.+.++ ++..+..++. .++..+-...+.++.+.+........+..+...
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~----D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---- 695 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG----DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---- 695 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc----CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC----
Confidence 3455577888888888899998887654 5566666654 345555556666666554322222233233222
Q ss_pred CChHHHHHHHHHHHhh-cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHH
Q 015590 125 FSDGFFYNVIKIYGNM-AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNI 203 (404)
Q Consensus 125 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 203 (404)
++..+-...+..+... .++. ..+...+.+ +|...=...+.++.+.+..+. + .... -.++..+-..
T Consensus 696 ~d~~VR~~A~~aL~~~~~~~~---~~l~~~L~D----~d~~VR~~Av~aL~~~~~~~~---l-~~~l---~D~~~~VR~~ 761 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAGDA---ALFAAALGD----PDHRVRIEAVRALVSVDDVES---V-AGAA---TDENREVRIA 761 (897)
T ss_pred CCHHHHHHHHHHHHhhccCCH---HHHHHHhcC----CCHHHHHHHHHHHhcccCcHH---H-HHHh---cCCCHHHHHH
Confidence 2233333344333321 2333 233333333 555555556667766655432 2 2222 2456667777
Q ss_pred HHHHHHhcCChHH-HHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 015590 204 LLKGLCENGNLEA-AFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQG 282 (404)
Q Consensus 204 li~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 282 (404)
...++...+..+. +...+..+.+ .+|...-.+.+.++.+.|..+.+...+..+.+. +|...-...+.++...+
T Consensus 762 aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 762 VAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAA 835 (897)
T ss_pred HHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhcc
Confidence 7777777776543 3344445443 467788888999999999876665555555543 36556666778888877
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 283 KVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
.. ++...+..+.+ .|+..+-...+.++.+.+....+...+..+.+
T Consensus 836 ~~-~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 836 AD-VAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred cc-chHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 64 45566666664 35777777888888886445567777777765
No 439
>PRK10941 hypothetical protein; Provisional
Probab=38.83 E-value=2.6e+02 Score=24.24 Aligned_cols=76 Identities=11% Similarity=0.019 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHH-HHHHHHHHHhhcCCHHHHHHHHhhcccCC-CCccHHHHHHHHHH
Q 015590 95 TLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGF-FYNVIKIYGNMAGRISKAIETLFDMPSYN-CWPSVKTFNLVLNL 172 (404)
Q Consensus 95 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~ 172 (404)
+.+-.+|.+.++++.|.++.+.+.... |++.. +..--..+.. -|.+..|..=++...+.- -.|+.......+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~---P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD---PEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 456678889999999999999987654 34333 3333333444 888888888777665422 12555555555554
Q ss_pred HH
Q 015590 173 LV 174 (404)
Q Consensus 173 ~~ 174 (404)
..
T Consensus 261 l~ 262 (269)
T PRK10941 261 IE 262 (269)
T ss_pred Hh
Confidence 44
No 440
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.72 E-value=2.6e+02 Score=24.23 Aligned_cols=151 Identities=13% Similarity=0.059 Sum_probs=69.3
Q ss_pred hcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHh---hcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHh----
Q 015590 103 QAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGN---MAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVS---- 175 (404)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---- 175 (404)
..+++..+...+......+ .......+...+.. ...+..+|.++|...-+.|. ......+...+..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCc
Confidence 4455666666666654432 11112222222221 13346666666665555442 2233334444433
Q ss_pred cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-------ChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH---
Q 015590 176 AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENG-------NLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE--- 245 (404)
Q Consensus 176 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 245 (404)
..+..+|..+|+...+.|..+-..+...+-..|..-+ +...|..+|......+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 2366667777777766664332233334444444321 1225666666665554 22233333333322
Q ss_pred -cCCHHHHHHHHHHHHHCC
Q 015590 246 -KGNVEEAFGLLERMESEG 263 (404)
Q Consensus 246 -~~~~~~A~~~~~~m~~~~ 263 (404)
..+.++|...|....+.|
T Consensus 203 v~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 224566666666665554
No 441
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.63 E-value=2.6e+02 Score=24.19 Aligned_cols=155 Identities=12% Similarity=0.047 Sum_probs=73.8
Q ss_pred cCcHhHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHchhC---CC--CCcHHHHHHHHHHHHHcC
Q 015590 176 AKLYGEIQGIYTSAAKLGVEID---ACCLNILLKGLCENGNLEAAFYVLDEFPKQ---NC--EPNVRTYSTLMHGLCEKG 247 (404)
Q Consensus 176 ~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~~~~~li~~~~~~~ 247 (404)
..++++|+.-|+...+...... -.....++..+.+.|++++....+.++... .+ .-+..+.|++++.-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467777777777766432221 223445667777777777777777766421 11 123344555555544444
Q ss_pred CHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC----CCC-------hhhHHHHHH
Q 015590 248 NVEEAFGLLERMESE-GIDADT----VTFNILISGLRKQGKVEEGMKLLERMKGKGC----YPN-------SASYQEVLY 311 (404)
Q Consensus 248 ~~~~A~~~~~~m~~~-~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~-------~~~~~~li~ 311 (404)
+.+--...|+.-.+. .-.-+. .|-+-|...|...|.+.+..++++++...-- .-| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 444444433322110 000011 1223444555555555555555555543310 001 233444455
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 015590 312 GLLDKKRFPEAKELVGRMI 330 (404)
Q Consensus 312 ~~~~~g~~~~a~~~~~~~~ 330 (404)
.|....+-..-..+++...
T Consensus 200 mYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhcccHHHHHHHHHHH
Confidence 5555555555555555443
No 442
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=38.55 E-value=4.5e+02 Score=26.93 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 015590 249 VEEAFGLLERME-SEGIDADTVTFNILISGLRKQGKVEEGMKLLERMK 295 (404)
Q Consensus 249 ~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 295 (404)
.++..+.+++.. ..|+..+......+.+. ..|++..|+.+++...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAi 225 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 344455555543 34555555555444432 3577777777766544
No 443
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.55 E-value=1.1e+02 Score=22.13 Aligned_cols=38 Identities=18% Similarity=0.082 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 015590 281 QGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKR 318 (404)
Q Consensus 281 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 318 (404)
.+..-.|.++++.+.+.+..++..|.-..++.+.+.|-
T Consensus 13 ~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 13 SDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33344455555555444433444444444444444443
No 444
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=38.34 E-value=3.6e+02 Score=25.73 Aligned_cols=213 Identities=12% Similarity=0.114 Sum_probs=112.7
Q ss_pred CHHHHHHHHhhcccC-CCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-CChHH-HH
Q 015590 143 RISKAIETLFDMPSY-NCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCEN-GNLEA-AF 218 (404)
Q Consensus 143 ~~~~A~~~~~~m~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~-a~ 218 (404)
.+.....+|+..... +..++ ...|..+.-.+...+...+ .-..+...++..+...|-.-+....+. .+++- -.
T Consensus 336 ~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~---~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~ 412 (568)
T KOG2396|consen 336 RILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE---VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFE 412 (568)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH---HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHH
Confidence 455555666655442 22232 2355555555555443322 222222333445555555555554432 12222 12
Q ss_pred HHHHHchhCCCCCcHHHHHHHHHHHHHcCC-H-HHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHHh
Q 015590 219 YVLDEFPKQNCEPNVRTYSTLMHGLCEKGN-V-EEAFGLLERMESEGIDADTVTF-NILISGLRKQGKVEEGMKLLERMK 295 (404)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~-~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~ 295 (404)
..|......-..+-...|++.. .|+ . ...+.++-.....-..|+..|+ +.+++.+-..|-.++|..++..+.
T Consensus 413 ~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~ 487 (568)
T KOG2396|consen 413 ELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQ 487 (568)
T ss_pred HHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3334444332244455555544 122 1 1222333333333344566665 456777777788888888888887
Q ss_pred hCCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 296 GKGCYPNSASYQEVLYGLLD--KKRFPEAKELVGRMICE-RMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 296 ~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
... +|+...|.-+|..-.. .-++.-+.++++.|... | .|+..|.-.+.-=...|..+.+-.++.+..+
T Consensus 488 ~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 488 ELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 762 4566677766664222 23377777888877654 4 6666777666666677887777777766554
No 445
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.23 E-value=2e+02 Score=22.77 Aligned_cols=61 Identities=5% Similarity=0.074 Sum_probs=35.8
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCC
Q 015590 80 QYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGR 143 (404)
Q Consensus 80 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 143 (404)
.+++..|++.+..-. .++..+...++.-.|.++++.+.+.+ ...+..++|..|..+.. .|-
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~-~~is~aTVYRtL~~L~e-~Gl 75 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAE-PQAKPPTVYRALDFLLE-QGF 75 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhC-CCCCcchHHHHHHHHHH-CCC
Confidence 334555666555443 44445555556667777887776655 34455666776666665 443
No 446
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.71 E-value=2.5e+02 Score=23.60 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=54.2
Q ss_pred hcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 015590 140 MAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 140 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 219 (404)
..+++++|.+.+-.-. +.|+ ....++.++...|+.+.|.++++.+.-.. .+......++.. ..++.+.+|..
T Consensus 90 D~~~~~~A~~~L~~ps---~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 90 DHGDFEEALELLSHPS---LIPW--FPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred ChHhHHHHHHHhCCCC---CCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHH
Confidence 4678888888774421 1122 22346777777888888888887654221 122223333333 56678888877
Q ss_pred HHHHchhCCCCCcHHHHHHHHHHHHHc
Q 015590 220 VLDEFPKQNCEPNVRTYSTLMHGLCEK 246 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~li~~~~~~ 246 (404)
+-....+. .....+..++..+...
T Consensus 162 ~~R~~~~~---~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 162 FQRSYPDE---LRRRLFEQLLEHCLEE 185 (226)
T ss_pred HHHhCchh---hhHHHHHHHHHHHHHH
Confidence 76665532 1134555666655543
No 447
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.63 E-value=3.3e+02 Score=25.05 Aligned_cols=58 Identities=10% Similarity=-0.180 Sum_probs=40.0
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcccCCCCccHH--HHHHHHHHHHh--cCcHhHHHHHHHHHHHc
Q 015590 133 VIKIYGNMAGRISKAIETLFDMPSYNCWPSVK--TFNLVLNLLVS--AKLYGEIQGIYTSAAKL 192 (404)
Q Consensus 133 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~--~~~~~~a~~~~~~~~~~ 192 (404)
....++. .+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 137 ~a~~l~n-~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFN-RYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455555 89999999999998876 545544 44555555544 44677888888877655
No 448
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.88 E-value=4e+02 Score=25.76 Aligned_cols=35 Identities=17% Similarity=0.464 Sum_probs=20.7
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 015590 260 ESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 260 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
.+.|+..+......++... .|++..|..++++...
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia 226 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSIA 226 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHh
Confidence 4456665655555554442 4777777777766543
No 449
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=36.82 E-value=2.5e+02 Score=23.37 Aligned_cols=50 Identities=6% Similarity=-0.012 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhcccC---CCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccC
Q 015590 108 DAIEDIMQRIKVEKLC---RFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSY 157 (404)
Q Consensus 108 ~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 157 (404)
..|.+.|...-..... ..+...+..++..+..+.|+.++|.+.|.++...
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4455555554333212 1223344445555555677777777777766553
No 450
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.54 E-value=1.4e+02 Score=20.28 Aligned_cols=25 Identities=20% Similarity=0.022 Sum_probs=16.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC
Q 015590 309 VLYGLLDKKRFPEAKELVGRMICER 333 (404)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~~~ 333 (404)
+++.+.++.-.++|+++++.|.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4555666666777777777777665
No 451
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.51 E-value=1.9e+02 Score=22.05 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=12.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 015590 309 VLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
|.-++.+.+++++++++.+.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHh
Confidence 33345555555555555555544
No 452
>PRK09857 putative transposase; Provisional
Probab=36.06 E-value=3e+02 Score=24.18 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 015590 202 NILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGID 265 (404)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 265 (404)
..++......++.++..++++.+.+.. +......-++..-+.+.|.-+++.++-.+|...|+.
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444444555555555554444331 222222223334444444444455555555555544
No 453
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.06 E-value=2.5e+02 Score=23.20 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=53.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 015590 241 HGLCEKGNVEEAFGLLERMESEGIDAD----TVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDK 316 (404)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 316 (404)
+-+.++|++++|..-|....+.-.... .+.|..-..++.+.+.++.|..--.+..+.+.. .......-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 446677888888888877776532211 133444455566777777777766666655311 111222223356666
Q ss_pred CChhHHHHHHHHHHHC
Q 015590 317 KRFPEAKELVGRMICE 332 (404)
Q Consensus 317 g~~~~a~~~~~~~~~~ 332 (404)
..+++|++=|..+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7777777777777664
No 454
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=36.01 E-value=4.1e+02 Score=25.66 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=57.7
Q ss_pred ChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCCh------------HHHHHHHHHH
Q 015590 70 DPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSD------------GFFYNVIKIY 137 (404)
Q Consensus 70 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~l~~~ 137 (404)
+.+.-...++......++.-+...+..+.+ ...|...++..+++.+...+....+. .....++...
T Consensus 179 ~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~~~~~~~~~~~~~i 256 (515)
T COG2812 179 DLEEIAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGLTDIEKLLSLLEAI 256 (515)
T ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHHccCCcccHHHHHHHhCCCCHHHHHHHHHHH
Confidence 346677778888888888888887776654 46678888889998876654211121 1222233333
Q ss_pred HhhcCCHHHHHHHHhhcccCCCCcc
Q 015590 138 GNMAGRISKAIETLFDMPSYNCWPS 162 (404)
Q Consensus 138 ~~~~g~~~~A~~~~~~m~~~~~~p~ 162 (404)
. .++..+++..++++.+.|..|.
T Consensus 257 ~--~~d~~~~~~~~~~l~~~G~~~~ 279 (515)
T COG2812 257 L--KGDAKEALRLINELIEEGKDPE 279 (515)
T ss_pred H--ccCHHHHHHHHHHHHHhCcCHH
Confidence 3 5777777777777777775444
No 455
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.98 E-value=4e+02 Score=25.50 Aligned_cols=101 Identities=11% Similarity=0.051 Sum_probs=52.4
Q ss_pred HHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 015590 250 EEAFGLLERM-ESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGR 328 (404)
Q Consensus 250 ~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (404)
++....++.. ...|+..+......++. ...|+.-.|+.+++.....+ ....++..+...+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l--------------- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI--------------- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh---------------
Confidence 3444444444 33566666666555543 34577888888887754321 0112222222111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 015590 329 MICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMG 374 (404)
Q Consensus 329 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 374 (404)
|. ++...+..++.+....+....|..++.+|.+.|..|...
T Consensus 244 ----g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 244 ----GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred ----CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 21 244445555555555555566777777777766666544
No 456
>PRK09857 putative transposase; Provisional
Probab=35.89 E-value=3.1e+02 Score=24.16 Aligned_cols=65 Identities=9% Similarity=0.046 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 015590 307 QEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPR 372 (404)
Q Consensus 307 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 372 (404)
..++.-....++.++..++++.+.+. .++......++..-+...|.-+++.++..+|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444555555556666555543 222333344455556666666677778888887777765
No 457
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=35.86 E-value=3.2e+02 Score=24.43 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=12.1
Q ss_pred HHHHHHhcCChHHHHHHHHHchh
Q 015590 204 LLKGLCENGNLEAAFYVLDEFPK 226 (404)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~~~~ 226 (404)
|..+.-+.|+..+|.+.|.++.+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhh
Confidence 33333445666666666655544
No 458
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=35.84 E-value=98 Score=22.67 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=24.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 015590 308 EVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKL 353 (404)
Q Consensus 308 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 353 (404)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4445555555566666666666665555555554445555555543
No 459
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.65 E-value=5.9e+02 Score=27.38 Aligned_cols=156 Identities=11% Similarity=0.110 Sum_probs=88.5
Q ss_pred HhcCCChhHHHHHHHHHhhC----------------------CCCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHH
Q 015590 65 FSNLRDPISVISVLNQYSKR----------------------KDYNPN-----EALYTLIINKLAQAKRFDAIEDIMQRI 117 (404)
Q Consensus 65 ~~~~~~~~~a~~~~~~~~~~----------------------~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~ 117 (404)
|...|.+.+|+..|.++... .|-.|+ .+-|..+++.+-+.+-.+.+.++-..+
T Consensus 930 yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~A 1009 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKA 1009 (1480)
T ss_pred eecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 66778899999988887541 111222 233667777777777777777776665
Q ss_pred Hhcc-cCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHh------------HHHH
Q 015590 118 KVEK-LCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYG------------EIQG 184 (404)
Q Consensus 118 ~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~------------~a~~ 184 (404)
.+.- ...|+...+.+.+-......|.+-+|...+-+-.... ........++..++..|.++ +..+
T Consensus 1010 Ie~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdse--rrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~ 1087 (1480)
T KOG4521|consen 1010 IENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSE--RRRDCLRQLVIVLFECGELEALATFPFIGLEQEVED 1087 (1480)
T ss_pred HHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHH--HHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHH
Confidence 4432 1223333444443333333777777777665543311 22234555666666666544 3444
Q ss_pred -HHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 015590 185 -IYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLD 222 (404)
Q Consensus 185 -~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 222 (404)
+++..-+...-....-|+.|-..+...+++.+|-.+.-
T Consensus 1088 ~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1088 FLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 33333333222334466777777788899988866543
No 460
>PF00772 DnaB: DnaB-like helicase N terminal domain; InterPro: IPR007693 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1B79_D 1JWE_A 3GXV_C 3BGW_C 2R6D_B 2R6C_D 2R6E_B 2R6A_A 2VYE_A 2VYF_B ....
Probab=35.34 E-value=1.6e+02 Score=20.66 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHh
Q 015590 109 AIEDIMQRIKVEKLCRFSDGFFYNVIKIYGN 139 (404)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (404)
.+.++...+.......+.....+..+..+..
T Consensus 22 ~~~~i~~~L~~e~F~~~~h~~If~~i~~l~~ 52 (103)
T PF00772_consen 22 AIDEIIDKLSPEDFYDPAHRRIFEAILELYR 52 (103)
T ss_dssp HHHHHHTT-SGGGSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHhCCHHHHHHHHHHHHHHH
Confidence 4444444443333333333444444444444
No 461
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.16 E-value=1e+02 Score=22.32 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=29.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 015590 239 LMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKV 284 (404)
Q Consensus 239 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 284 (404)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555566666777888887777666666665566666666643
No 462
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.65 E-value=1.2e+02 Score=19.24 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=5.9
Q ss_pred cCCHHHHHHHHHHHH
Q 015590 246 KGNVEEAFGLLERME 260 (404)
Q Consensus 246 ~~~~~~A~~~~~~m~ 260 (404)
.|++=+|.++++.+-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 344444444444443
No 463
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.54 E-value=3.2e+02 Score=23.98 Aligned_cols=24 Identities=8% Similarity=-0.114 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHH
Q 015590 335 SPSFVSYKKLIHGLCNQKLVEDVD 358 (404)
Q Consensus 335 ~p~~~~~~~li~~~~~~g~~~~a~ 358 (404)
.-|+..|..+..+|.-.|+.+.+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 468888999999999988766655
No 464
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.39 E-value=31 Score=30.58 Aligned_cols=95 Identities=18% Similarity=0.009 Sum_probs=68.3
Q ss_pred HhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcH-HHHHHHHHHHHHcCCHHHH
Q 015590 174 VSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNV-RTYSTLMHGLCEKGNVEEA 252 (404)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A 252 (404)
...|.++.|++.|...+... ++....|.--.+.+.+.+++..|.+=.+...+. .||. ..|-.--.+-...|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 35677999999998888776 667777777788888899998888877777665 3443 2233223334457889999
Q ss_pred HHHHHHHHHCCCCCCHHHH
Q 015590 253 FGLLERMESEGIDADTVTF 271 (404)
Q Consensus 253 ~~~~~~m~~~~~~p~~~~~ 271 (404)
-..|....+.+..+....|
T Consensus 202 a~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHhccccHHHHHH
Confidence 9999988888776655444
No 465
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=34.30 E-value=1e+02 Score=28.78 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHH-HHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKT-FNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 219 (404)
.+.++.|..++.+..+.. ||-.. |..-..++.+.+++..|+.=...+++.. +--...|---..++.+.+.+.+|..
T Consensus 17 ~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred cchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHHHH
Confidence 566777777777766643 54443 3333356666667766666666655543 2222233333334444455556655
Q ss_pred HHHHchhCCCCCcHHHHHHHHHHH
Q 015590 220 VLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
.|+..... .|+..-...++.-|
T Consensus 94 ~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 94 DLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHhhhc--CcCcHHHHHHHHHH
Confidence 55555443 45555555444443
No 466
>PRK10941 hypothetical protein; Provisional
Probab=34.00 E-value=3.1e+02 Score=23.75 Aligned_cols=72 Identities=13% Similarity=-0.044 Sum_probs=30.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC-CCCCCHHhHHHHHH
Q 015590 309 VLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ-GFVPRMGMWREIVG 381 (404)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~ 381 (404)
+-.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++..++. .-.|+.......+.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 3344444555555555555554421 112222333333344555555555544444432 33334433333333
No 467
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.98 E-value=2.2e+02 Score=21.88 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=22.4
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 015590 238 TLMHGLCEK-GNVEEAFGLLERMESEGIDADTVTFNILISGLRKQG 282 (404)
Q Consensus 238 ~li~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 282 (404)
.++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 344444433 345566666666666555445444444444444444
No 468
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.52 E-value=4.5e+02 Score=25.40 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC
Q 015590 167 NLVLNLLVSAKLYGEIQGIYTSAAKLGVEID 197 (404)
Q Consensus 167 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 197 (404)
..++.++. .++.+.+..+++++...|..+.
T Consensus 250 ~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 250 FDILEALA-AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 33444433 3777778888888887776654
No 469
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.38 E-value=83 Score=31.96 Aligned_cols=123 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 015590 211 NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKL 290 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 290 (404)
..+++++..+.+...--| .++|..+.+.|.++-|+...+.=..+ ...+..+|+.+.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHH
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 015590 291 LERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQG 368 (404)
Q Consensus 291 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 368 (404)
-..+- +..+|..|.......|+.+-|+..|++... |..|--.|.-.|+.++-.++.+....++
T Consensus 666 akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~ 728 (1202)
T KOG0292|consen 666 AKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN 728 (1202)
T ss_pred HHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh
No 470
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.20 E-value=4e+02 Score=24.70 Aligned_cols=174 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhccc--CCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc---------CCCCC
Q 015590 129 FFYNVIKIYGNMAGRISKAIETLFDMPS--YNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL---------GVEID 197 (404)
Q Consensus 129 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------g~~~~ 197 (404)
....+...|.. +|+++.|++.|-+..+ ...+-.+..|-.+|..-.-.|+|..+..+..+..+. .+++-
T Consensus 152 a~~Dl~dhy~~-cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 152 ALEDLGDHYLD-CGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHH-hccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHchhCCCC------CcHHHHHHHHHHHHHcCCHHHHHHH-----HHHHHHCCCCC
Q 015590 198 ACCLNILLKGLCENGNLEAAFYVLDEFPKQNCE------PNVRTYSTLMHGLCEKGNVEEAFGL-----LERMESEGIDA 266 (404)
Q Consensus 198 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~-----~~~m~~~~~~p 266 (404)
...+..+...+.+ ++..|.+.|-......+. |.-++--..+.+++--++-+--+.+ |+.+.+.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel---- 304 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL---- 304 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc----
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-----CCCCChhhHHHHHH
Q 015590 267 DTVTFNILISGLRKQGKVEEGMKLLERMKGK-----GCYPNSASYQEVLY 311 (404)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~li~ 311 (404)
.+..+..+...|. +++...+++++++..+ =+.|.+.+.-.+|.
T Consensus 305 ~Pqlr~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 305 EPQLREILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred ChHHHHHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 471
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.15 E-value=8.6e+02 Score=28.56 Aligned_cols=150 Identities=14% Similarity=0.105 Sum_probs=99.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHc----hhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015590 203 ILLKGLCENGNLEAAFYVLDEF----PKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGL 278 (404)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 278 (404)
.+..+-.+++.+..|.-.++.- .+. .....-|..+...|+.-+++|...-+...-.. +...+ .-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHH
Confidence 5666788899999999999883 221 22334455666699999999988777764111 22222 344556
Q ss_pred HcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHcCCChHHH
Q 015590 279 RKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKL-IHGLCNQKLVEDV 357 (404)
Q Consensus 279 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~a 357 (404)
...|++..|...|+.+.+.+ ++...+++-++......|.++..+-..+-.... ..+....++.+ +.+-.+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 77899999999999999884 223667777777777778888777766655543 23333344433 3444677777777
Q ss_pred HHHHH
Q 015590 358 DWVLK 362 (404)
Q Consensus 358 ~~~~~ 362 (404)
.....
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 66655
No 472
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.94 E-value=5.1e+02 Score=25.81 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=19.0
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 015590 260 ESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMK 295 (404)
Q Consensus 260 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 295 (404)
.+.|+..+......++.. ..|++..++.++++..
T Consensus 197 ~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~i 230 (618)
T PRK14951 197 AAENVPAEPQALRLLARA--ARGSMRDALSLTDQAI 230 (618)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 345666565555555542 3466767766665543
No 473
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=32.35 E-value=1.1e+02 Score=22.42 Aligned_cols=47 Identities=26% Similarity=0.226 Sum_probs=27.9
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 015590 168 LVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNL 214 (404)
Q Consensus 168 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 214 (404)
.++..+.+.+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 44555555555666777777777766666666555556666666543
No 474
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.27 E-value=3.8e+02 Score=24.19 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015590 285 EEGMKLLERMKGKGCYPNS----ASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHG 347 (404)
Q Consensus 285 ~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 347 (404)
+++..++.++... -|+. .-|.++.......|.++.++.+|++++..|-.|-...-..+++.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3444455544444 2332 23444444444455555555555555555544444444444433
No 475
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.97 E-value=1.7e+02 Score=20.15 Aligned_cols=43 Identities=14% Similarity=0.039 Sum_probs=27.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 324 ELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 324 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
++|+-....|+..|...|..+++.+.-+=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6666666667777777777766666655556666666666553
No 476
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=31.69 E-value=45 Score=21.35 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=20.6
Q ss_pred HhcCC-ChhHHHHHHHHHhhCCCCCCCHH
Q 015590 65 FSNLR-DPISVISVLNQYSKRKDYNPNEA 92 (404)
Q Consensus 65 ~~~~~-~~~~a~~~~~~~~~~~~~~p~~~ 92 (404)
+..++ +++.|+..|..+.....++|+..
T Consensus 34 Le~~~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 34 LEDNNWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 33444 88999999999976666777653
No 477
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=31.45 E-value=5.1e+02 Score=25.38 Aligned_cols=254 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred hhcccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCCh
Q 015590 48 YKLNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSD 127 (404)
Q Consensus 48 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 127 (404)
+.+..+....++.+++.+... +.+.-.++++++.. .. ...+..++++....|-......+.+.+..........
T Consensus 303 ~~~~~~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~----~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea 376 (574)
T smart00638 303 SDVQEPAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KK----KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEA 376 (574)
T ss_pred HHhccchHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHH
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccH-------HHHHHHHHHHHhcCc-------HhHHHHHHHHHHHcC
Q 015590 128 GFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSV-------KTFNLVLNLLVSAKL-------YGEIQGIYTSAAKLG 193 (404)
Q Consensus 128 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g 193 (404)
...+..+..... .-..+-...+|+-+....+++.. .+|..+++-++.... -+-...+.+.+.+.-
T Consensus 377 ~~~~~~~~~~~~-~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~ 455 (574)
T smart00638 377 AQLLAVLPHTAR-YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHHHHHhhh-cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHH
Q 015590 194 VEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK--GNVEEAFGLLERMESEGIDADTVTF 271 (404)
Q Consensus 194 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~m~~~~~~p~~~~~ 271 (404)
-.-|..--...|.+.+..|.......+-.-+.... ..+...-...+.++.+. ...+++..++-..-...-.+...=.
T Consensus 456 ~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~-~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 456 SKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAE-PLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred hcCCchheeeHHHhhhccCChhHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHH
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhC-CCCCChhhHHHH
Q 015590 272 NILISGLRKQGKVEEGMKLLERMKGK-GCYPNSASYQEV 309 (404)
Q Consensus 272 ~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l 309 (404)
.+++......-.......+...+... .......+|+.|
T Consensus 535 aA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 535 AAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
No 478
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=31.32 E-value=39 Score=31.29 Aligned_cols=184 Identities=12% Similarity=0.017 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHCCCCCCHHHHHHHHHHHHcCCCHH
Q 015590 212 GNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERM------ESEGIDADTVTFNILISGLRKQGKVE 285 (404)
Q Consensus 212 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m------~~~~~~p~~~~~~~li~~~~~~g~~~ 285 (404)
+.+++-.+.++.+.+.| .+|..+.+ ++.|.+.+++++|.+..++- .-.|.+.-..-+...-+.+....-+-
T Consensus 25 ~~~~e~~~~l~~l~~~g-~~dvl~lt--iDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~~~~Pl 101 (428)
T cd00245 25 PLLEEHIELLRTLQEEG-AADVLPLT--IDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEGVDFPV 101 (428)
T ss_pred CCHHHHHHHHHHHHhcC-CCCeeccc--cccchhhhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHhCCCCE
Q ss_pred -------HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH---HHHH----HCCCCCCHHHHHHHHHHHHcC
Q 015590 286 -------EGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELV---GRMI----CERMSPSFVSYKKLIHGLCNQ 351 (404)
Q Consensus 286 -------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~---~~~~----~~~~~p~~~~~~~li~~~~~~ 351 (404)
.+..+++-+...|+.-...---+.-.-|.+.-.+++++.-| +++. +.|++.+..++..+...++--
T Consensus 102 qvRhGt~d~~~l~e~~~a~g~~a~egg~isy~~py~k~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg~l~~~l~pp 181 (428)
T cd00245 102 QVRHGTPDARLLAEIAIASGFDATEGGPISYNLPYSKNVPLEKSIENWQYCDRLVGFYEENGVPINREPFGPLTGTLVPP 181 (428)
T ss_pred eeccCCccHHHHHHHHHHhCcccccccceeeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccCCcCcccCcCCc
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhhhhhcC
Q 015590 352 KLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETVDSLAS 404 (404)
Q Consensus 352 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~a~ 404 (404)
. +.-|..+++.+...|...+. +.-.|...++.-+=..-+..++++.+
T Consensus 182 t-la~aiaylea~la~glgV~~-----lS~~f~~~~n~~qDIAk~RA~RrL~a 228 (428)
T cd00245 182 S-ILIAIQILEALLAAEQGVKS-----ISVGYAQQGNLTQDIAALRALRELAK 228 (428)
T ss_pred H-HHHHHHHHHHHHHccCCCCE-----EEEEeecCCCHHHHHHHHHHHHHHHH
No 479
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.11 E-value=3.4e+02 Score=23.19 Aligned_cols=120 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHH-HHHHHHHHHHhcCcH
Q 015590 101 LAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVK-TFNLVLNLLVSAKLY 179 (404)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~ 179 (404)
|-...+++.|...+.+..... |+...++.-=..+..+..+++.+..=-.+..+.. ||.+ ....+..+......+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n---P~~~~Y~tnralchlk~~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN---PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC---CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhhccc
Q ss_pred hHHHHHHHHH----HHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHch
Q 015590 180 GEIQGIYTSA----AKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFP 225 (404)
Q Consensus 180 ~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 225 (404)
+.|+..+.+. ....+++.......|..+--+.-...+..++.++..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
No 480
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.02 E-value=4.8e+02 Score=24.97 Aligned_cols=14 Identities=7% Similarity=0.209 Sum_probs=8.9
Q ss_pred cCCHHHHHHHHhhc
Q 015590 141 AGRISKAIETLFDM 154 (404)
Q Consensus 141 ~g~~~~A~~~~~~m 154 (404)
.|+...|+.++++.
T Consensus 213 ~Gd~RdAL~lLeq~ 226 (484)
T PRK14956 213 DGSVRDMLSFMEQA 226 (484)
T ss_pred CChHHHHHHHHHHH
Confidence 46666666666654
No 481
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=30.88 E-value=6.6e+02 Score=26.55 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHC
Q 015590 235 TYSTLMHGLCEKG--NVEEAFGLLERMESE 262 (404)
Q Consensus 235 ~~~~li~~~~~~~--~~~~A~~~~~~m~~~ 262 (404)
-...++.+|++.+ ++++|+.+..++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3445666666666 666666666666654
No 482
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=30.83 E-value=5.5e+02 Score=25.55 Aligned_cols=218 Identities=11% Similarity=0.043 Sum_probs=90.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHhcccC-CCChHHHH
Q 015590 60 EVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRF-------DAIEDIMQRIKVEKLC-RFSDGFFY 131 (404)
Q Consensus 60 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~-------~~a~~~~~~~~~~~~~-~~~~~~~~ 131 (404)
.+|=-|.|+|++++|.++..... ..+......+...+..+....+- ++...-|+........ .|-....+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~--~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY 193 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENR--NQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVY 193 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTG--GGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhh--hhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Confidence 45667889999999999986553 33455666777888888765322 2344444443222100 00111223
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCc-----------HhHHHHHHHHHHHcCCCCCHhH
Q 015590 132 NVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKL-----------YGEIQGIYTSAAKLGVEIDACC 200 (404)
Q Consensus 132 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----------~~~a~~~~~~~~~~g~~~~~~~ 200 (404)
.++. -|. -..+ .. ..+..+..-|-.+=-.+.+... +++..+...+.-+..+.+ ..-
T Consensus 194 ~ilg-~cD---~~~~------~~--~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~ 260 (613)
T PF04097_consen 194 KILG-RCD---LSRR------HL--PEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSN 260 (613)
T ss_dssp HHHH-T-----CCC-------S---TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT----
T ss_pred HHHh-cCC---cccc------ch--HHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chh
Confidence 3331 111 1000 00 0122233322222212222211 112222222222222333 111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 015590 201 LNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEG-IDADTVTFNILISGLR 279 (404)
Q Consensus 201 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~ 279 (404)
.-.....+.-+|+++.|.+.+-.. .+...|.+.+...+.-|.-.+-.+... ..+.... -.|....+..||..|.
T Consensus 261 p~~Yf~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~ 335 (613)
T PF04097_consen 261 PLLYFQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYT 335 (613)
T ss_dssp ---HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHH
Confidence 223445556689999999988872 222556666655555443322222211 2222111 1112266788888887
Q ss_pred c---CCCHHHHHHHHHHHhhC
Q 015590 280 K---QGKVEEGMKLLERMKGK 297 (404)
Q Consensus 280 ~---~g~~~~a~~~~~~m~~~ 297 (404)
+ ..++.+|.+.|--+...
T Consensus 336 ~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 336 RSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHhccCHHHHHHHHHHHHHc
Confidence 6 46788888888877765
No 483
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=30.60 E-value=4.5e+02 Score=25.28 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015590 231 PNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLE 292 (404)
Q Consensus 231 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 292 (404)
.++..|-.++.-|...++|++|.++-+-..+ ...|..+........++.-++..|.
T Consensus 571 isV~py~~iL~e~~sssKWeqavRLCrfv~e------qTMWAtlAa~Av~~~~m~~~EiAYa 626 (737)
T KOG1524|consen 571 ISVNPYPEILHEYLSSSKWEQAVRLCRFVQE------QTMWATLAAVAVRKHQMQISEIAYA 626 (737)
T ss_pred eeccccHHHHHHHhccchHHHHHHHHHhccc------hHHHHHHHHHHHhhccccHHHHHHH
Confidence 3455566677777777778877777655442 2345444444444444444443333
No 484
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=30.24 E-value=1.3e+02 Score=18.09 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=14.9
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCCC
Q 015590 348 LCNQKLVEDVDWVLKKMVQQGFVPR 372 (404)
Q Consensus 348 ~~~~g~~~~a~~~~~~m~~~~~~p~ 372 (404)
+...|--.++..+.=++.+.|+.|.
T Consensus 14 lLntgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 14 LLNTGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred HHcCCCCHHHHHHHHHHHHCCCCHH
Confidence 3445555666666666666666654
No 485
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=29.95 E-value=3.2e+02 Score=22.66 Aligned_cols=52 Identities=13% Similarity=0.059 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcccCCCC----ccHH-HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCC
Q 015590 144 ISKAIETLFDMPSYNCW----PSVK-TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVE 195 (404)
Q Consensus 144 ~~~A~~~~~~m~~~~~~----p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 195 (404)
...|++.|.+.....-. .+.. ..-.+.....+.|+.++|.+.|..+...+-.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 45677777766542211 2223 3344556778899999999999999987533
No 486
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=29.73 E-value=5.2e+02 Score=24.96 Aligned_cols=44 Identities=25% Similarity=0.499 Sum_probs=24.2
Q ss_pred HHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 015590 250 EEAFGLLERM-ESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMK 295 (404)
Q Consensus 250 ~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 295 (404)
++....++.. .+.|+..+......++.. ..|++..|...++.+.
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai 234 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAA 234 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 3444444433 344665565555555443 3477777777776664
No 487
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=29.65 E-value=1.2e+02 Score=23.10 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=19.9
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 015590 348 LCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVG 381 (404)
Q Consensus 348 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 381 (404)
+.+.|-..+...++++|.+.|+..+...|+.+++
T Consensus 119 ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 119 AKSKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 3445555566666666666666666666655554
No 488
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=29.54 E-value=5.5e+02 Score=25.18 Aligned_cols=44 Identities=9% Similarity=0.134 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 015590 72 ISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRI 117 (404)
Q Consensus 72 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 117 (404)
++....+.+..+..|+..+......++.. ..|++..|...++.+
T Consensus 181 ~ei~~~L~~i~~~egi~i~~~al~~ia~~--s~G~~R~al~~Ldq~ 224 (559)
T PRK05563 181 EDIVERLKYILDKEGIEYEDEALRLIARA--AEGGMRDALSILDQA 224 (559)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHH
Confidence 33444445444455665665555554442 235666666666654
No 489
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=29.22 E-value=2.2e+02 Score=20.41 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=13.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcc
Q 015590 131 YNVIKIYGNMAGRISKAIETLFDMP 155 (404)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~m~ 155 (404)
..++..|.. .|+.++|...+.++.
T Consensus 6 ~~~l~ey~~-~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFS-SGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHH-HT-HHHHHHHHHHTT
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHhC
Confidence 345555555 667777777666653
No 490
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.87 E-value=4e+02 Score=23.42 Aligned_cols=80 Identities=14% Similarity=0.070 Sum_probs=33.8
Q ss_pred HhHHHHHHHHHHHcCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 015590 179 YGEIQGIYTSAAKLGV----EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFG 254 (404)
Q Consensus 179 ~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 254 (404)
.+.+.+.|+.....+. ..+...-..++....+.|+.+.-..+++.... .++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 3345555555554311 22333444444444455554443333333332 2344444555555555555555555
Q ss_pred HHHHHHH
Q 015590 255 LLERMES 261 (404)
Q Consensus 255 ~~~~m~~ 261 (404)
+++....
T Consensus 223 ~l~~~l~ 229 (324)
T PF11838_consen 223 LLDLLLS 229 (324)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 5555444
No 491
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.83 E-value=5.9e+02 Score=25.34 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=18.2
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 015590 74 VISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQR 116 (404)
Q Consensus 74 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 116 (404)
....+....+..|+..+......++. ...|++..+..++++
T Consensus 188 i~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq 228 (618)
T PRK14951 188 VLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQ 228 (618)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 33344433334445444444444443 223555555555443
No 492
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.73 E-value=5e+02 Score=24.14 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHchhC--C----C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 200 CLNILLKGLCENGNLEAAFYVLDEFPKQ--N----C-EPNVRTYSTLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 200 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~----~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
+...|++.++-.||+..|.++++.+.-. + + .-.+.+|-.+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999876421 1 1 1234456677788889999999999998764
No 493
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.66 E-value=4.9e+02 Score=23.96 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=40.1
Q ss_pred HHHHHhcCChHHHHHHHHHchhCCCCCcHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHHC
Q 015590 205 LKGLCENGNLEAAFYVLDEFPKQNCEPNVR--TYSTLMHGLC--EKGNVEEAFGLLERMESE 262 (404)
Q Consensus 205 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~~~~~~A~~~~~~m~~~ 262 (404)
+....+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455788999999999998876 555554 4455555554 355788898888887654
No 494
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=27.63 E-value=1.3e+02 Score=19.91 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=20.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015590 315 DKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCN 350 (404)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 350 (404)
-.|+.+.+.+++++..+.|..|.......+..+...
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 346666777777776666666655555545444433
No 495
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=27.61 E-value=7.4e+02 Score=26.06 Aligned_cols=248 Identities=11% Similarity=0.033 Sum_probs=144.2
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHH
Q 015590 88 NPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFN 167 (404)
Q Consensus 88 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 167 (404)
.+|+.+-...+..+.+.+..+ +...+....... +..+-...+..+.. -+........+..+... +|..+-.
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D~----d~~VR~~Aa~aL~~-l~~~~~~~~~L~~~L~~---~d~~VR~ 702 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALGDG----AAAVRRAAAEGLRE-LVEVLPPAPALRDHLGS---PDPVVRA 702 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcCC----CHHHHHHHHHHHHH-HHhccCchHHHHHHhcC---CCHHHHH
Confidence 567888888888888887655 434444433222 22222333333332 21111111222233322 4555555
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcC
Q 015590 168 LVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKG 247 (404)
Q Consensus 168 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 247 (404)
..+..+...+..+ ...+.. ..+ .+|..+=...+.++.+.+..+. +...+. .++...-...+.++...+
T Consensus 703 ~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~----D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 703 AALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---VAGAAT----DENREVRIAVAKGLATLG 770 (897)
T ss_pred HHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhc----CCCHHHHHHHHHHHHHhc
Confidence 5666665543221 222222 332 4566666667777777665432 222222 456677777777888777
Q ss_pred CHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 015590 248 NVEE-AFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELV 326 (404)
Q Consensus 248 ~~~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 326 (404)
..+. +...+..+... +|...-...+.++...|..+.+...+..+.+. ++..+-...+.++...+. +++...+
T Consensus 771 ~~~~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 771 AGGAPAGDAVRALTGD---PDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred cccchhHHHHHHHhcC---CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHH
Confidence 6543 34555565543 47777888899999999876665555555543 366677778888888876 4566776
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 327 GRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 327 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
..+.+ .|+...-...+.++.+.+....+...+....+
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66664 57777777788888886444567777777664
No 496
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.40 E-value=6.7e+02 Score=25.51 Aligned_cols=189 Identities=9% Similarity=0.105 Sum_probs=87.5
Q ss_pred HHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHH----------HHHHHHHHHHHcCCH
Q 015590 183 QGIYTSAAKLGVEID---ACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVR----------TYSTLMHGLCEKGNV 249 (404)
Q Consensus 183 ~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~~~~ 249 (404)
..++.+|..+=-.|+ ..+...++-.|-...+++...++.+.+... ||.. .|.--++---+-|+-
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccH
Confidence 334455554422333 234445555566666677777776666542 3211 122222222334566
Q ss_pred HHHHHHHHHHHHC--CCCCCHHHH-----H--HHHHHHHcCCCHHHHHHHHHHHhhCCCCCChh---hHHHHHHHHHhcC
Q 015590 250 EEAFGLLERMESE--GIDADTVTF-----N--ILISGLRKQGKVEEGMKLLERMKGKGCYPNSA---SYQEVLYGLLDKK 317 (404)
Q Consensus 250 ~~A~~~~~~m~~~--~~~p~~~~~-----~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g 317 (404)
++|+...-.|.+. .+.||.... - .+-+.|...+..+.|...|++.-+. .|+.. -+..|+.+-++.
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG~~- 336 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAGEH- 336 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhhhh-
Confidence 6777666665543 244554321 1 1122344455666777777776654 44432 234444433322
Q ss_pred ChhHHHHHH------HHH-HHCCCCCCHHHHH---HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 015590 318 RFPEAKELV------GRM-ICERMSPSFVSYK---KLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIV 380 (404)
Q Consensus 318 ~~~~a~~~~------~~~-~~~~~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 380 (404)
++...++- ..+ -++|.--+...|. ..+.+-.-.+++.+|.+.-+.|. .++|..--..+.+
T Consensus 337 -Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mf--KLk~P~WYLkS~m 406 (1226)
T KOG4279|consen 337 -FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMF--KLKPPVWYLKSTM 406 (1226)
T ss_pred -ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHh--ccCCceehHHHHH
Confidence 22211111 111 1112111222222 22344455678888888888887 4555544333333
No 497
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=27.11 E-value=1.9e+02 Score=19.16 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 015590 283 KVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDK 316 (404)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 316 (404)
+.+.|..++..+.... +.++..||++...+.++
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 3456666666666553 33667777777665554
No 498
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.84 E-value=3.8e+02 Score=22.49 Aligned_cols=64 Identities=9% Similarity=0.019 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCc---cHHHH--HHHHHHHHhcCcHhHHHHHHHHHHH
Q 015590 125 FSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWP---SVKTF--NLVLNLLVSAKLYGEIQGIYTSAAK 191 (404)
Q Consensus 125 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~ 191 (404)
......+.++..|.. ...+.+|-+.|..-. |+.| |..++ ..-|+...+.|+.+.|++...++..
T Consensus 24 ~~~~d~n~LVmnylv-~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLV-HEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred cchhhHHHHHHHHHH-hccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Confidence 344455666666666 444555555554322 2223 23333 2344555666777777766666543
No 499
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.71 E-value=8.4e+02 Score=26.37 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHH
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEI----DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLM 240 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 240 (404)
-|..+++.+-+.+..+.+.++-...++.- ++ -..+++.+.+.....|.+-+|...+-.-... ..-......++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENL-PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHH
Confidence 36778888888888888888887777652 22 2456778888888889988887776554332 22233556677
Q ss_pred HHHHHcCCHH------------HHHH-HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 015590 241 HGLCEKGNVE------------EAFG-LLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLL 291 (404)
Q Consensus 241 ~~~~~~~~~~------------~A~~-~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 291 (404)
..++.+|.++ +... +++..-.....-....|+.|-..+...+++.+|-.+.
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 7777887764 3333 3333322222223345666666677788887765543
No 500
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=26.46 E-value=7.1e+02 Score=25.43 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=16.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015590 246 KGNVEEAFGLLERMESEGIDADTVTFNILISG 277 (404)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 277 (404)
.++++.|+..+.+|.+.|..|....-..++.+
T Consensus 271 gsD~daAl~~la~ml~~Gedp~~I~Rrl~~~a 302 (725)
T PRK13341 271 GSDPDAALYWLARMVEAGEDPRFIFRRMLIAA 302 (725)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34555566666666655555443333333333
Done!