Query 015590
Match_columns 404
No_of_seqs 569 out of 2724
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 15:15:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1E-34 3.5E-39 270.7 24.8 207 145-351 7-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 7.7E-35 2.6E-39 271.5 23.8 206 180-385 7-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 7.2E-32 2.5E-36 260.3 33.6 355 35-401 64-503 (597)
4 2xpi_A Anaphase-promoting comp 100.0 3.3E-32 1.1E-36 262.6 30.3 362 29-399 122-576 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1E-24 3.5E-29 198.9 36.4 302 53-365 65-366 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-24 4.7E-29 198.1 35.5 334 54-402 32-368 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.8E-23 6.1E-28 194.4 35.7 313 53-380 24-370 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.9E-21 6.6E-26 180.7 31.9 302 88-402 23-358 (450)
9 3ieg_A DNAJ homolog subfamily 99.9 1.4E-19 5E-24 162.4 38.5 311 57-382 5-349 (359)
10 2gw1_A Mitochondrial precursor 99.9 5.1E-20 1.8E-24 173.8 32.3 358 37-402 19-478 (514)
11 3hym_B Cell division cycle pro 99.9 4.7E-19 1.6E-23 157.3 32.2 291 53-353 20-320 (330)
12 3hym_B Cell division cycle pro 99.9 5.3E-19 1.8E-23 156.9 29.3 293 87-389 18-321 (330)
13 2gw1_A Mitochondrial precursor 99.9 2.7E-19 9.1E-24 168.9 27.9 335 32-374 47-483 (514)
14 3fp2_A TPR repeat-containing p 99.9 2E-18 6.7E-23 164.0 33.7 358 33-402 34-491 (537)
15 3ieg_A DNAJ homolog subfamily 99.9 5.3E-18 1.8E-22 152.1 33.8 301 90-402 2-335 (359)
16 1fch_A Peroxisomal targeting s 99.8 3.6E-19 1.2E-23 160.7 23.8 291 65-363 35-355 (368)
17 3spa_A Mtrpol, DNA-directed RN 99.8 6.7E-21 2.3E-25 183.3 11.1 117 198-314 127-247 (1134)
18 4eqf_A PEX5-related protein; a 99.8 1.2E-18 4.1E-23 157.3 24.0 234 53-296 63-309 (365)
19 1fch_A Peroxisomal targeting s 99.8 5.4E-18 1.8E-22 153.0 27.0 265 54-329 63-356 (368)
20 3fp2_A TPR repeat-containing p 99.8 5.7E-18 2E-22 160.8 28.0 255 105-368 216-492 (537)
21 3cv0_A Peroxisome targeting si 99.8 4.4E-18 1.5E-22 150.8 24.3 234 53-296 19-268 (327)
22 3spa_A Mtrpol, DNA-directed RN 99.8 1.9E-20 6.7E-25 180.1 9.6 153 230-387 124-286 (1134)
23 4eqf_A PEX5-related protein; a 99.8 2.2E-18 7.6E-23 155.5 21.6 266 90-363 64-352 (365)
24 3cv0_A Peroxisome targeting si 99.8 1.1E-17 3.8E-22 148.2 23.5 267 90-364 20-312 (327)
25 1b89_A Protein (clathrin heavy 99.8 5.7E-18 1.9E-22 151.4 14.6 285 33-359 12-303 (449)
26 3mkr_A Coatomer subunit epsilo 99.8 8.6E-16 2.9E-20 133.7 27.4 211 141-365 47-262 (291)
27 3mkr_A Coatomer subunit epsilo 99.7 7.8E-16 2.7E-20 134.0 24.6 273 62-358 6-285 (291)
28 1b89_A Protein (clathrin heavy 99.7 2.3E-17 7.9E-22 147.5 14.9 282 66-393 14-302 (449)
29 2xm6_A Protein corresponding t 99.7 3.7E-13 1.3E-17 126.3 39.5 313 57-398 77-428 (490)
30 2ooe_A Cleavage stimulation fa 99.7 1E-13 3.5E-18 131.4 35.7 355 39-401 27-491 (530)
31 2pl2_A Hypothetical conserved 99.7 2.4E-15 8.3E-20 125.1 21.3 199 161-365 3-212 (217)
32 2xm6_A Protein corresponding t 99.7 5.1E-13 1.7E-17 125.4 39.5 317 52-398 36-392 (490)
33 3uq3_A Heat shock protein STI1 99.7 8.6E-15 2.9E-19 124.8 22.1 213 141-367 18-236 (258)
34 2ho1_A Type 4 fimbrial biogene 99.7 2.4E-14 8.4E-19 121.8 24.9 209 163-377 37-246 (252)
35 2vq2_A PILW, putative fimbrial 99.7 3.7E-14 1.3E-18 118.2 24.7 213 162-379 7-221 (225)
36 3uq3_A Heat shock protein STI1 99.7 1.7E-14 5.9E-19 122.9 23.0 157 164-332 80-236 (258)
37 2ooe_A Cleavage stimulation fa 99.7 1.6E-13 5.6E-18 130.0 32.1 334 53-399 11-451 (530)
38 2pl2_A Hypothetical conserved 99.7 9.5E-15 3.3E-19 121.5 20.1 112 177-292 98-209 (217)
39 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.1E-15 3.9E-20 131.7 14.5 222 67-296 17-243 (275)
40 2ho1_A Type 4 fimbrial biogene 99.7 4.1E-14 1.4E-18 120.4 23.2 201 55-262 37-238 (252)
41 4g1t_A Interferon-induced prot 99.7 3E-13 1E-17 126.1 31.0 338 55-398 51-455 (472)
42 3u4t_A TPR repeat-containing p 99.6 1E-13 3.6E-18 119.2 24.8 229 96-331 8-249 (272)
43 1ouv_A Conserved hypothetical 99.6 8E-13 2.7E-17 113.9 30.3 210 141-368 19-252 (273)
44 2q7f_A YRRB protein; TPR, prot 99.6 1.8E-14 6.1E-19 121.7 19.0 204 51-262 19-222 (243)
45 1ouv_A Conserved hypothetical 99.6 1.3E-12 4.3E-17 112.7 30.3 224 90-333 5-252 (273)
46 2q7f_A YRRB protein; TPR, prot 99.6 3.1E-14 1.1E-18 120.2 19.7 200 163-367 23-222 (243)
47 2vq2_A PILW, putative fimbrial 99.6 2E-13 6.7E-18 113.7 23.8 188 141-331 21-210 (225)
48 3u4t_A TPR repeat-containing p 99.6 5.7E-14 2E-18 120.9 20.9 244 130-380 6-261 (272)
49 1xnf_A Lipoprotein NLPI; TPR, 99.6 9E-14 3.1E-18 119.7 21.4 219 141-365 18-242 (275)
50 4g1t_A Interferon-induced prot 99.6 1.4E-13 5E-18 128.3 24.2 315 55-376 94-469 (472)
51 2h6f_A Protein farnesyltransfe 99.6 2.9E-13 1E-17 121.8 24.8 230 91-329 97-344 (382)
52 2h6f_A Protein farnesyltransfe 99.6 1.7E-13 5.9E-18 123.3 22.5 247 127-382 96-362 (382)
53 1xi4_A Clathrin heavy chain; a 99.6 6.8E-12 2.3E-16 125.3 32.2 278 55-386 1049-1327(1630)
54 1xi4_A Clathrin heavy chain; a 99.6 1.6E-11 5.3E-16 122.8 32.7 289 59-398 989-1305(1630)
55 4a1s_A PINS, partner of inscut 99.5 2.7E-13 9.3E-18 124.0 18.5 227 141-367 99-372 (411)
56 3sf4_A G-protein-signaling mod 99.5 9.3E-14 3.2E-18 126.7 15.1 298 57-354 11-363 (406)
57 2ond_A Cleavage stimulation fa 99.5 8.1E-12 2.8E-16 109.7 26.6 183 145-332 81-270 (308)
58 4a1s_A PINS, partner of inscut 99.5 3.8E-13 1.3E-17 123.1 18.5 273 58-332 51-372 (411)
59 2ond_A Cleavage stimulation fa 99.5 1.9E-11 6.4E-16 107.3 27.5 184 180-366 81-269 (308)
60 3vtx_A MAMA; tetratricopeptide 99.5 5.1E-12 1.7E-16 101.9 21.6 165 163-331 5-169 (184)
61 3vtx_A MAMA; tetratricopeptide 99.5 3.1E-12 1.1E-16 103.1 20.2 175 196-376 3-177 (184)
62 3sf4_A G-protein-signaling mod 99.5 7.8E-13 2.7E-17 120.5 18.6 298 88-388 6-362 (406)
63 3ro2_A PINS homolog, G-protein 99.5 8.2E-13 2.8E-17 116.8 17.9 274 60-366 10-331 (338)
64 3ro2_A PINS homolog, G-protein 99.5 1.5E-12 5.2E-17 115.1 19.0 238 165-402 45-332 (338)
65 3ulq_A Response regulator aspa 99.5 2.2E-12 7.5E-17 117.0 20.1 297 65-366 22-367 (383)
66 4abn_A Tetratricopeptide repea 99.5 1.5E-12 5E-17 121.4 19.2 184 141-329 115-318 (474)
67 4abn_A Tetratricopeptide repea 99.5 1.6E-12 5.4E-17 121.2 18.2 216 142-363 82-317 (474)
68 3nf1_A KLC 1, kinesin light ch 99.4 6E-12 2.1E-16 110.2 18.7 238 128-366 27-306 (311)
69 3nf1_A KLC 1, kinesin light ch 99.4 1.6E-12 5.5E-17 113.8 13.0 190 141-331 82-306 (311)
70 3as5_A MAMA; tetratricopeptide 99.4 6.2E-11 2.1E-15 95.1 20.7 163 200-366 10-172 (186)
71 3as5_A MAMA; tetratricopeptide 99.4 9.7E-11 3.3E-15 93.9 21.7 153 141-297 21-173 (186)
72 3ulq_A Response regulator aspa 99.4 1.8E-11 6.1E-16 111.0 18.6 296 101-401 22-367 (383)
73 3e4b_A ALGK; tetratricopeptide 99.4 2.6E-10 9E-15 105.5 25.7 309 33-370 44-390 (452)
74 3e4b_A ALGK; tetratricopeptide 99.4 8.2E-11 2.8E-15 108.9 20.9 287 57-369 37-353 (452)
75 1hz4_A MALT regulatory protein 99.4 6.6E-10 2.2E-14 100.2 26.5 199 167-365 97-320 (373)
76 3q15_A PSP28, response regulat 99.4 2.4E-10 8.3E-15 103.3 23.3 296 66-366 23-364 (378)
77 1hz4_A MALT regulatory protein 99.3 6.8E-10 2.3E-14 100.0 26.1 270 62-332 21-322 (373)
78 4gyw_A UDP-N-acetylglucosamine 99.3 8.4E-11 2.9E-15 114.2 21.0 165 163-331 9-173 (723)
79 3edt_B KLC 2, kinesin light ch 99.3 2.9E-11 1E-15 104.1 14.6 203 163-366 43-280 (283)
80 4gyw_A UDP-N-acetylglucosamine 99.3 1.2E-10 4.1E-15 113.2 20.3 168 195-366 6-173 (723)
81 4i17_A Hypothetical protein; T 99.3 9.7E-10 3.3E-14 91.7 22.4 199 162-374 6-214 (228)
82 4e6h_A MRNA 3'-END-processing 99.3 2.4E-08 8.3E-13 96.0 33.1 201 199-401 344-569 (679)
83 3edt_B KLC 2, kinesin light ch 99.2 1.1E-10 3.6E-15 100.6 13.9 230 67-297 13-281 (283)
84 4i17_A Hypothetical protein; T 99.2 7.7E-10 2.6E-14 92.3 18.8 154 196-353 5-168 (228)
85 3mv2_B Coatomer subunit epsilo 99.2 2E-08 6.7E-13 86.2 27.5 249 62-339 20-287 (310)
86 3q15_A PSP28, response regulat 99.2 3.8E-09 1.3E-13 95.4 22.2 187 141-331 154-364 (378)
87 2fo7_A Synthetic consensus TPR 99.2 2.4E-09 8.4E-14 80.6 16.8 125 167-294 5-129 (136)
88 1qqe_A Vesicular transport pro 99.2 2E-09 7E-14 93.5 18.1 211 143-373 32-273 (292)
89 4e6h_A MRNA 3'-END-processing 99.2 3.3E-08 1.1E-12 95.1 27.9 343 51-399 62-530 (679)
90 2fo7_A Synthetic consensus TPR 99.1 3.8E-09 1.3E-13 79.5 16.6 127 236-365 4-130 (136)
91 2pzi_A Probable serine/threoni 99.1 1.7E-09 5.8E-14 105.3 17.0 170 66-245 402-580 (681)
92 3urz_A Uncharacterized protein 99.1 5.6E-09 1.9E-13 85.8 17.4 131 204-340 60-192 (208)
93 3mv2_B Coatomer subunit epsilo 99.1 4.8E-08 1.6E-12 83.8 23.5 178 182-366 85-281 (310)
94 1qqe_A Vesicular transport pro 99.1 7.1E-09 2.4E-13 90.0 18.5 188 141-330 50-267 (292)
95 3qky_A Outer membrane assembly 99.1 1.1E-08 3.8E-13 87.1 18.5 95 130-227 18-126 (261)
96 3qky_A Outer membrane assembly 99.1 5.9E-09 2E-13 88.9 16.6 105 88-193 12-127 (261)
97 3urz_A Uncharacterized protein 99.1 9.7E-09 3.3E-13 84.3 16.6 138 236-381 57-198 (208)
98 3rjv_A Putative SEL1 repeat pr 99.0 5.8E-08 2E-12 79.9 20.7 178 181-370 4-200 (212)
99 2r5s_A Uncharacterized protein 99.0 1.1E-08 3.8E-13 81.5 15.6 161 166-330 9-171 (176)
100 3qou_A Protein YBBN; thioredox 99.0 3.9E-08 1.3E-12 85.1 19.9 166 161-330 115-282 (287)
101 3dra_A Protein farnesyltransfe 99.0 3.2E-07 1.1E-11 79.3 25.1 216 145-366 50-286 (306)
102 3qou_A Protein YBBN; thioredox 99.0 5.4E-08 1.9E-12 84.2 20.1 166 88-260 114-282 (287)
103 2pzi_A Probable serine/threoni 99.0 2.5E-08 8.7E-13 97.0 19.2 173 174-353 402-583 (681)
104 2vsy_A XCC0866; transferase, g 99.0 1.7E-08 5.9E-13 96.3 17.5 152 105-262 3-157 (568)
105 4ga2_A E3 SUMO-protein ligase 99.0 5.9E-09 2E-13 80.7 11.6 137 141-282 10-148 (150)
106 2r5s_A Uncharacterized protein 99.0 2.9E-08 1E-12 79.0 15.9 161 94-260 9-171 (176)
107 2yhc_A BAMD, UPF0169 lipoprote 99.0 7.4E-08 2.5E-12 80.1 18.7 57 274-332 153-213 (225)
108 3rjv_A Putative SEL1 repeat pr 99.0 4.7E-08 1.6E-12 80.5 17.1 163 162-333 17-198 (212)
109 3dra_A Protein farnesyltransfe 99.0 5.6E-07 1.9E-11 77.8 24.5 152 177-331 124-286 (306)
110 2yhc_A BAMD, UPF0169 lipoprote 98.9 9.4E-08 3.2E-12 79.4 18.9 199 62-297 11-213 (225)
111 4ga2_A E3 SUMO-protein ligase 98.9 8.9E-09 3E-13 79.7 11.3 142 207-352 6-148 (150)
112 2uy1_A Cleavage stimulation fa 98.9 3.3E-06 1.1E-10 78.7 30.3 308 69-397 28-408 (493)
113 2vsy_A XCC0866; transferase, g 98.9 3.9E-08 1.3E-12 93.9 17.5 154 141-298 2-158 (568)
114 2ifu_A Gamma-SNAP; membrane fu 98.9 3.6E-08 1.2E-12 86.2 14.3 129 200-330 78-222 (307)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.9 4.1E-07 1.4E-11 74.6 19.4 126 131-263 10-151 (213)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.9E-07 1.3E-11 74.7 18.7 129 164-297 7-150 (213)
117 4f3v_A ESX-1 secretion system 98.8 4.7E-07 1.6E-11 76.7 18.4 191 67-262 18-237 (282)
118 2ifu_A Gamma-SNAP; membrane fu 98.8 1.6E-07 5.4E-12 82.1 15.3 198 141-365 4-222 (307)
119 1a17_A Serine/threonine protei 98.8 4.2E-07 1.4E-11 71.0 15.7 127 165-294 15-143 (166)
120 1na0_A Designed protein CTPR3; 98.8 4.2E-07 1.4E-11 67.0 14.8 97 164-262 10-106 (125)
121 3q7a_A Farnesyltransferase alp 98.8 7.5E-06 2.6E-10 71.6 24.6 140 102-247 65-215 (349)
122 3u3w_A Transcriptional activat 98.8 4.6E-06 1.6E-10 72.1 23.6 163 204-366 81-265 (293)
123 4gco_A Protein STI-1; structur 98.7 4E-07 1.4E-11 67.9 14.1 97 164-262 14-110 (126)
124 2c2l_A CHIP, carboxy terminus 98.7 1.5E-07 5.1E-12 81.1 13.0 194 162-366 3-198 (281)
125 3q7a_A Farnesyltransferase alp 98.7 9.3E-06 3.2E-10 71.1 23.7 178 63-248 62-257 (349)
126 2e2e_A Formate-dependent nitri 98.7 2.5E-07 8.6E-12 73.5 12.6 120 175-297 22-144 (177)
127 1a17_A Serine/threonine protei 98.7 8.8E-07 3E-11 69.2 15.3 94 201-296 16-109 (166)
128 2vyi_A SGTA protein; chaperone 98.7 4.9E-07 1.7E-11 67.3 13.2 116 164-282 13-128 (131)
129 4f3v_A ESX-1 secretion system 98.7 2.1E-06 7.3E-11 72.6 18.2 193 141-342 19-245 (282)
130 2lni_A Stress-induced-phosphop 98.7 6.2E-07 2.1E-11 67.1 13.4 98 163-262 16-113 (133)
131 1na0_A Designed protein CTPR3; 98.7 1.2E-06 4E-11 64.5 14.7 96 199-296 10-105 (125)
132 3gw4_A Uncharacterized protein 98.6 3.3E-07 1.1E-11 74.3 12.2 23 307-329 151-173 (203)
133 2qfc_A PLCR protein; TPR, HTH, 98.6 3.8E-06 1.3E-10 72.7 19.6 164 202-365 79-264 (293)
134 3u3w_A Transcriptional activat 98.6 1.5E-06 5E-11 75.3 16.9 161 134-295 82-264 (293)
135 3gw4_A Uncharacterized protein 98.6 3.3E-07 1.1E-11 74.4 12.1 158 209-367 3-176 (203)
136 2qfc_A PLCR protein; TPR, HTH, 98.6 3E-06 1E-10 73.3 18.8 165 166-330 78-264 (293)
137 3gyz_A Chaperone protein IPGC; 98.6 4.7E-07 1.6E-11 69.8 11.8 97 164-262 37-133 (151)
138 2c2l_A CHIP, carboxy terminus 98.6 2.6E-07 8.8E-12 79.6 11.0 194 90-297 3-199 (281)
139 3gyz_A Chaperone protein IPGC; 98.6 1.6E-06 5.4E-11 66.8 14.3 96 200-297 38-133 (151)
140 2vyi_A SGTA protein; chaperone 98.6 1.1E-06 3.7E-11 65.4 13.2 117 234-353 13-129 (131)
141 2vgx_A Chaperone SYCD; alterna 98.6 4.9E-07 1.7E-11 69.6 11.2 91 167-259 25-115 (148)
142 2e2e_A Formate-dependent nitri 98.6 3.1E-07 1.1E-11 72.9 10.5 120 141-263 23-145 (177)
143 2lni_A Stress-induced-phosphop 98.6 1.4E-06 4.9E-11 65.0 13.5 97 198-296 16-112 (133)
144 2uy1_A Cleavage stimulation fa 98.6 2.3E-05 7.7E-10 73.0 24.2 227 145-386 196-449 (493)
145 4gco_A Protein STI-1; structur 98.6 1.6E-06 5.5E-11 64.6 13.4 94 201-296 16-109 (126)
146 1p5q_A FKBP52, FK506-binding p 98.6 1.8E-06 6E-11 76.4 15.4 149 142-294 127-291 (336)
147 1p5q_A FKBP52, FK506-binding p 98.6 1.4E-07 4.8E-12 83.5 8.1 148 105-260 127-292 (336)
148 2vgx_A Chaperone SYCD; alterna 98.6 4.9E-07 1.7E-11 69.6 10.2 99 197-297 20-118 (148)
149 1elw_A TPR1-domain of HOP; HOP 98.5 5.4E-06 1.9E-10 60.2 15.1 95 165-261 6-100 (118)
150 3upv_A Heat shock protein STI1 98.5 3.1E-06 1.1E-10 62.8 13.7 97 164-262 5-101 (126)
151 2xcb_A PCRH, regulatory protei 98.5 2.3E-06 7.9E-11 65.2 12.5 97 164-262 19-115 (142)
152 3upv_A Heat shock protein STI1 98.5 4.8E-06 1.6E-10 61.8 13.3 95 200-296 6-100 (126)
153 2kck_A TPR repeat; tetratricop 98.5 2.2E-06 7.5E-11 61.7 11.1 95 165-261 8-105 (112)
154 2fbn_A 70 kDa peptidylprolyl i 98.4 5.7E-07 1.9E-11 72.9 8.4 155 208-365 14-184 (198)
155 2xcb_A PCRH, regulatory protei 98.4 1.4E-06 4.9E-11 66.3 10.0 97 199-297 19-115 (142)
156 1elw_A TPR1-domain of HOP; HOP 98.4 1.2E-05 4.3E-10 58.2 14.9 97 199-297 5-101 (118)
157 3dss_A Geranylgeranyl transfer 98.4 6.8E-05 2.3E-09 65.3 21.1 229 141-379 42-315 (331)
158 3q49_B STIP1 homology and U bo 98.4 7.7E-06 2.6E-10 61.5 13.6 98 162-261 8-105 (137)
159 4gcn_A Protein STI-1; structur 98.4 5.7E-06 1.9E-10 61.6 12.2 58 166-224 11-68 (127)
160 3dss_A Geranylgeranyl transfer 98.4 0.00021 7E-09 62.2 23.7 221 102-332 40-304 (331)
161 1elr_A TPR2A-domain of HOP; HO 98.4 2.9E-06 9.9E-11 63.0 10.6 98 164-262 5-108 (131)
162 3sz7_A HSC70 cochaperone (SGT) 98.4 9.1E-06 3.1E-10 63.5 13.8 99 162-262 10-108 (164)
163 2fbn_A 70 kDa peptidylprolyl i 98.4 6.4E-06 2.2E-10 66.6 13.2 120 164-286 39-174 (198)
164 2kck_A TPR repeat; tetratricop 98.4 6.2E-06 2.1E-10 59.2 11.8 99 198-297 6-106 (112)
165 1elr_A TPR2A-domain of HOP; HO 98.4 3E-06 1E-10 62.9 10.2 98 199-297 5-108 (131)
166 4gcn_A Protein STI-1; structur 98.4 9.3E-06 3.2E-10 60.4 12.6 105 200-307 10-120 (127)
167 3q49_B STIP1 homology and U bo 98.4 1.2E-05 4E-10 60.5 13.4 98 197-296 8-105 (137)
168 2dba_A Smooth muscle cell asso 98.4 2.2E-05 7.4E-10 59.7 15.1 98 162-262 27-128 (148)
169 3sz7_A HSC70 cochaperone (SGT) 98.4 8.9E-06 3E-10 63.5 13.0 99 197-297 10-108 (164)
170 4b4t_Q 26S proteasome regulato 98.3 3.9E-05 1.3E-09 70.2 18.5 199 63-261 12-244 (434)
171 4b4t_Q 26S proteasome regulato 98.3 6.4E-05 2.2E-09 68.7 18.6 190 141-330 17-243 (434)
172 1hxi_A PEX5, peroxisome target 98.3 1.1E-05 3.6E-10 59.5 10.7 94 166-261 20-113 (121)
173 1hxi_A PEX5, peroxisome target 98.2 1.1E-05 3.7E-10 59.5 10.6 94 202-297 21-114 (121)
174 2dba_A Smooth muscle cell asso 98.2 5.9E-05 2E-09 57.2 14.9 96 198-296 28-127 (148)
175 1wao_1 Serine/threonine protei 98.2 1.2E-05 4.2E-10 74.6 12.7 114 141-257 19-134 (477)
176 3ro3_A PINS homolog, G-protein 98.2 7.9E-06 2.7E-10 63.1 9.7 132 235-366 11-157 (164)
177 2xev_A YBGF; tetratricopeptide 98.2 0.0001 3.5E-09 54.4 14.7 91 170-262 9-105 (129)
178 1wao_1 Serine/threonine protei 98.2 1.6E-05 5.5E-10 73.8 12.2 124 166-292 9-134 (477)
179 3ro3_A PINS homolog, G-protein 98.2 1.7E-05 6E-10 61.1 10.7 95 165-259 11-115 (164)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.5E-05 8.7E-10 72.1 13.2 120 164-286 269-403 (457)
181 2xev_A YBGF; tetratricopeptide 98.1 7.3E-05 2.5E-09 55.3 13.2 93 204-297 8-105 (129)
182 1ihg_A Cyclophilin 40; ppiase 98.1 5E-05 1.7E-09 67.9 13.2 96 165-261 225-335 (370)
183 3k9i_A BH0479 protein; putativ 98.1 1.2E-05 4E-10 58.8 7.4 83 177-260 4-88 (117)
184 3rkv_A Putative peptidylprolyl 98.1 7.2E-05 2.5E-09 58.1 12.3 98 164-262 12-126 (162)
185 3k9i_A BH0479 protein; putativ 98.0 1E-05 3.5E-10 59.1 6.6 86 211-297 3-90 (117)
186 3rkv_A Putative peptidylprolyl 98.0 0.0001 3.5E-09 57.2 12.2 99 198-297 11-126 (162)
187 1dce_A Protein (RAB geranylger 98.0 0.00047 1.6E-08 65.3 18.6 172 179-355 45-243 (567)
188 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00013 4.4E-09 67.3 14.1 123 198-323 268-405 (457)
189 1ihg_A Cyclophilin 40; ppiase 97.9 0.0001 3.5E-09 65.9 12.6 137 200-358 225-361 (370)
190 2if4_A ATFKBP42; FKBP-like, al 97.9 3.4E-05 1.2E-09 68.1 8.7 147 164-332 180-328 (338)
191 1klx_A Cysteine rich protein B 97.9 0.00066 2.2E-08 51.1 14.3 110 178-298 10-127 (138)
192 1dce_A Protein (RAB geranylger 97.9 0.0016 5.6E-08 61.6 20.1 174 106-286 44-244 (567)
193 1klx_A Cysteine rich protein B 97.9 0.00045 1.5E-08 52.0 13.1 88 275-368 32-127 (138)
194 2hr2_A Hypothetical protein; a 97.8 0.00031 1.1E-08 53.7 11.9 95 165-260 13-129 (159)
195 2if4_A ATFKBP42; FKBP-like, al 97.8 5.2E-05 1.8E-09 67.0 8.5 94 165-260 232-326 (338)
196 2l6j_A TPR repeat-containing p 97.8 2.3E-05 8E-10 56.2 5.0 65 162-227 3-67 (111)
197 3n71_A Histone lysine methyltr 97.7 0.00018 6.2E-09 66.5 11.1 86 174-259 320-419 (490)
198 1na3_A Designed protein CTPR2; 97.7 0.0005 1.7E-08 47.0 10.4 78 164-243 10-87 (91)
199 2hr2_A Hypothetical protein; a 97.7 0.00057 1.9E-08 52.2 11.3 62 200-261 13-85 (159)
200 2l6j_A TPR repeat-containing p 97.7 6.7E-05 2.3E-09 53.8 5.7 63 234-297 5-67 (111)
201 2kat_A Uncharacterized protein 97.7 0.00041 1.4E-08 50.1 9.9 77 182-260 4-80 (115)
202 2kat_A Uncharacterized protein 97.6 0.00023 8E-09 51.4 8.0 80 216-297 3-82 (115)
203 1na3_A Designed protein CTPR2; 97.6 0.00062 2.1E-08 46.5 9.7 63 199-262 10-72 (91)
204 3n71_A Histone lysine methyltr 97.5 0.00051 1.7E-08 63.5 10.3 122 140-261 321-463 (490)
205 1zu2_A Mitochondrial import re 97.5 0.00053 1.8E-08 52.3 8.2 94 178-275 17-131 (158)
206 3ma5_A Tetratricopeptide repea 97.4 0.00079 2.7E-08 47.3 8.1 60 234-294 8-67 (100)
207 3ma5_A Tetratricopeptide repea 97.3 0.0012 4E-08 46.3 8.5 60 164-224 8-67 (100)
208 1zu2_A Mitochondrial import re 97.3 0.00048 1.7E-08 52.5 6.4 86 210-297 14-120 (158)
209 3ly7_A Transcriptional activat 97.1 0.011 3.7E-07 51.8 13.6 74 300-377 274-347 (372)
210 3ly7_A Transcriptional activat 97.1 0.083 2.8E-06 46.3 18.8 48 161-209 192-244 (372)
211 3mkq_A Coatomer beta'-subunit; 97.0 0.022 7.6E-07 56.4 16.6 149 141-328 612-761 (814)
212 3qww_A SET and MYND domain-con 96.8 0.0045 1.5E-07 56.3 8.8 62 234-295 341-409 (433)
213 2kc7_A BFR218_protein; tetratr 96.8 0.0039 1.3E-07 43.3 6.6 50 175-225 12-62 (99)
214 2kc7_A BFR218_protein; tetratr 96.7 0.0053 1.8E-07 42.6 6.8 57 205-262 7-64 (99)
215 3qwp_A SET and MYND domain-con 96.7 0.0093 3.2E-07 54.2 10.0 92 205-296 294-399 (429)
216 1wy6_A Hypothetical protein ST 96.6 0.04 1.4E-06 40.1 10.6 63 165-228 93-155 (172)
217 3mkq_A Coatomer beta'-subunit; 96.5 0.054 1.9E-06 53.6 15.5 154 171-363 607-761 (814)
218 3qwp_A SET and MYND domain-con 96.5 0.017 5.7E-07 52.5 10.5 92 275-366 294-399 (429)
219 3bee_A Putative YFRE protein; 96.3 0.082 2.8E-06 36.2 10.7 66 231-297 4-72 (93)
220 3bee_A Putative YFRE protein; 96.2 0.043 1.5E-06 37.7 8.8 48 179-227 25-72 (93)
221 3qww_A SET and MYND domain-con 96.1 0.016 5.4E-07 52.7 8.1 85 141-225 311-409 (433)
222 1pc2_A Mitochondria fission pr 96.0 0.055 1.9E-06 40.7 9.3 79 251-331 16-99 (152)
223 3mkq_B Coatomer subunit alpha; 95.9 0.27 9.1E-06 38.0 12.9 103 206-329 13-115 (177)
224 2v5f_A Prolyl 4-hydroxylase su 95.8 0.1 3.5E-06 36.5 9.6 64 163-226 5-74 (104)
225 3u64_A Protein TP_0956; tetrat 95.7 0.79 2.7E-05 38.6 16.0 84 250-335 180-272 (301)
226 3mkq_B Coatomer subunit alpha; 95.7 0.44 1.5E-05 36.8 13.4 103 241-364 13-115 (177)
227 2v5f_A Prolyl 4-hydroxylase su 95.5 0.16 5.5E-06 35.5 9.9 67 196-262 3-75 (104)
228 1pc2_A Mitochondria fission pr 95.4 0.13 4.4E-06 38.7 9.2 80 216-297 16-100 (152)
229 3u64_A Protein TP_0956; tetrat 95.3 1.1 3.8E-05 37.7 19.4 128 142-273 135-282 (301)
230 1wy6_A Hypothetical protein ST 95.1 0.66 2.2E-05 33.9 14.9 138 211-370 20-157 (172)
231 2ff4_A Probable regulatory pro 95.0 1.6 5.6E-05 38.8 16.9 68 237-305 175-247 (388)
232 4h7y_A Dual specificity protei 94.7 0.28 9.5E-06 36.6 9.1 32 230-261 10-47 (161)
233 4b4t_P 26S proteasome regulato 94.5 2.6 9E-05 38.2 18.0 57 238-294 142-203 (445)
234 4h7y_A Dual specificity protei 94.1 0.56 1.9E-05 35.0 9.4 53 247-300 74-126 (161)
235 4ady_A RPN2, 26S proteasome re 93.6 6.3 0.00022 39.2 22.1 260 64-331 383-657 (963)
236 3lvg_A Clathrin heavy chain 1; 93.5 2.9E-05 9.9E-10 69.4 -16.6 244 42-327 43-286 (624)
237 4fhn_B Nucleoporin NUP120; pro 93.3 8.4 0.00029 39.8 21.2 55 94-155 815-869 (1139)
238 4b4t_P 26S proteasome regulato 93.3 4.6 0.00016 36.6 17.2 97 271-367 140-247 (445)
239 4gns_B Protein CSD3, chitin bi 93.3 0.44 1.5E-05 46.2 10.0 120 137-259 257-397 (754)
240 4gns_B Protein CSD3, chitin bi 93.2 1.6 5.5E-05 42.3 13.7 53 311-364 345-397 (754)
241 1nzn_A CGI-135 protein, fissio 93.0 0.39 1.3E-05 34.7 7.0 23 309-331 80-102 (126)
242 1nzn_A CGI-135 protein, fissio 92.8 0.82 2.8E-05 33.0 8.6 85 284-372 17-106 (126)
243 4fhn_B Nucleoporin NUP120; pro 92.6 5.5 0.00019 41.1 17.6 143 203-353 817-986 (1139)
244 1qsa_A Protein (soluble lytic 92.5 7.4 0.00025 36.9 21.7 115 248-366 229-347 (618)
245 2ff4_A Probable regulatory pro 92.4 1.8 6.1E-05 38.5 12.2 67 308-375 176-247 (388)
246 1v54_E Cytochrome C oxidase po 91.9 2.1 7.3E-05 29.3 9.2 50 283-332 25-74 (109)
247 3lvg_A Clathrin heavy chain 1; 91.6 0.036 1.2E-06 50.1 0.2 219 50-287 78-323 (624)
248 3ffl_A Anaphase-promoting comp 91.0 4 0.00014 31.0 10.8 70 50-119 15-91 (167)
249 1v54_E Cytochrome C oxidase po 89.9 3.4 0.00012 28.3 10.0 76 130-206 11-87 (109)
250 2y69_E Cytochrome C oxidase su 89.6 4 0.00014 29.7 9.2 62 283-345 68-129 (152)
251 4ady_A RPN2, 26S proteasome re 89.0 20 0.00067 35.8 23.0 258 100-365 383-656 (963)
252 2uwj_G Type III export protein 87.2 5.3 0.00018 27.2 8.4 77 178-262 21-97 (115)
253 2y69_E Cytochrome C oxidase su 87.2 6.9 0.00024 28.5 10.0 63 143-206 68-130 (152)
254 2p58_C Putative type III secre 86.8 5.7 0.00019 27.1 9.1 77 178-262 22-98 (116)
255 1wdy_A 2-5A-dependent ribonucl 85.4 7.7 0.00026 32.0 10.7 18 98-115 9-26 (285)
256 2uwj_G Type III export protein 84.9 7.2 0.00025 26.6 8.7 55 141-202 52-106 (115)
257 3o48_A Mitochondria fission 1 84.8 8.5 0.00029 27.9 8.7 72 300-373 37-111 (134)
258 2p58_C Putative type III secre 84.5 7.7 0.00026 26.5 9.6 54 141-201 53-106 (116)
259 1zbp_A Hypothetical protein VP 83.0 3.3 0.00011 34.3 6.8 114 276-402 5-129 (273)
260 2wpv_A GET4, UPF0363 protein Y 81.5 24 0.00082 30.0 16.8 167 93-295 35-215 (312)
261 3o48_A Mitochondria fission 1 80.7 12 0.00043 27.1 8.3 67 161-227 38-107 (134)
262 4b4t_R RPN7, 26S proteasome re 80.2 14 0.00047 33.3 10.6 61 235-295 133-195 (429)
263 4b4t_R RPN7, 26S proteasome re 78.2 24 0.00082 31.7 11.6 99 199-297 132-237 (429)
264 3lpz_A GET4 (YOR164C homolog); 77.1 35 0.0012 29.4 18.4 168 93-296 37-215 (336)
265 1wdy_A 2-5A-dependent ribonucl 76.4 17 0.00057 29.9 9.6 55 60-116 7-61 (285)
266 3txn_A 26S proteasome regulato 76.1 41 0.0014 29.7 20.5 242 127-374 19-290 (394)
267 3ffl_A Anaphase-promoting comp 75.4 24 0.00083 26.7 10.4 22 204-225 128-149 (167)
268 1zbp_A Hypothetical protein VP 75.0 34 0.0012 28.3 11.8 122 62-192 4-129 (273)
269 1y8m_A FIS1; mitochondria, unk 74.2 24 0.0008 26.0 11.4 65 301-365 37-104 (144)
270 1k1a_A B-cell lymphoma 3-encod 69.3 34 0.0012 27.1 9.6 17 208-224 86-102 (241)
271 1y8m_A FIS1; mitochondria, unk 68.1 33 0.0011 25.2 11.3 68 265-332 36-106 (144)
272 3esl_A Checkpoint serine/threo 67.8 42 0.0015 26.3 10.8 53 249-301 95-148 (202)
273 4g8k_A 2-5A-dependent ribonucl 67.7 56 0.0019 27.7 13.0 279 59-373 26-329 (337)
274 3esl_A Checkpoint serine/threo 67.1 44 0.0015 26.2 11.0 56 176-231 92-148 (202)
275 2wpv_A GET4, UPF0363 protein Y 65.6 63 0.0022 27.5 18.4 168 165-366 35-216 (312)
276 1k1a_A B-cell lymphoma 3-encod 64.9 40 0.0014 26.7 9.1 185 170-372 13-210 (241)
277 3ltm_A Alpha-REP4; protein eng 63.9 49 0.0017 25.7 18.9 48 197-248 63-110 (211)
278 1s6c_A KV4 potassium channel-i 63.0 46 0.0016 25.1 9.8 24 199-222 157-180 (183)
279 3hra_A Ankyrin repeat family p 62.4 50 0.0017 25.2 9.5 13 141-153 15-27 (201)
280 2jul_A Calsenilin; EF-hand, ca 62.3 62 0.0021 26.3 10.1 150 72-224 91-255 (256)
281 4a1g_A Mitotic checkpoint seri 60.8 49 0.0017 24.6 8.9 68 126-196 66-134 (152)
282 4a1g_A Mitotic checkpoint seri 57.0 58 0.002 24.2 8.4 72 87-162 64-135 (152)
283 3hra_A Ankyrin repeat family p 55.6 54 0.0018 25.0 8.1 15 358-372 158-172 (201)
284 3kea_A K1L; tropism, ANK repea 54.9 82 0.0028 26.0 9.6 15 279-293 169-183 (285)
285 4ets_A Ferric uptake regulatio 54.1 48 0.0016 24.9 7.1 71 71-144 13-85 (162)
286 3kea_A K1L; tropism, ANK repea 53.0 29 0.00099 28.8 6.4 114 204-330 65-185 (285)
287 3eu9_A Huntingtin-interacting 52.0 40 0.0014 26.6 6.9 12 141-152 19-30 (240)
288 2wvi_A Mitotic checkpoint seri 50.9 78 0.0027 23.9 8.9 70 126-198 61-131 (164)
289 3lpz_A GET4 (YOR164C homolog); 49.5 1.3E+02 0.0043 25.9 21.3 191 142-366 10-215 (336)
290 2nsz_A Programmed cell death p 49.0 71 0.0024 22.9 8.9 61 237-298 11-73 (129)
291 2ion_A PDCD4, programmed cell 48.8 80 0.0027 23.4 7.6 24 237-260 13-36 (152)
292 2d2s_A Exocyst complex compone 48.4 96 0.0033 25.0 8.4 23 97-119 24-46 (235)
293 3t8k_A Uncharacterized protein 47.7 91 0.0031 23.8 8.2 24 244-267 46-69 (186)
294 3txn_A 26S proteasome regulato 46.8 1.5E+02 0.0052 26.1 22.1 164 94-259 22-207 (394)
295 3bu8_A Telomeric repeat-bindin 45.2 60 0.002 25.7 6.2 69 319-389 88-163 (235)
296 4aez_C MAD3, mitotic spindle c 44.7 70 0.0024 25.6 6.8 51 181-231 132-183 (223)
297 3eiq_C Programmed cell death p 44.0 1.6E+02 0.0055 25.6 13.6 71 93-167 56-127 (358)
298 3jxi_A Vanilloid receptor-rela 43.1 16 0.00053 29.8 3.1 53 172-224 11-72 (260)
299 4aez_C MAD3, mitotic spindle c 41.9 54 0.0019 26.2 5.7 51 321-371 132-183 (223)
300 3ltj_A Alpharep-4; protein eng 41.6 1.2E+02 0.0039 23.2 20.0 49 197-249 58-106 (201)
301 4ets_A Ferric uptake regulatio 41.2 94 0.0032 23.3 6.9 56 298-354 28-85 (162)
302 1mzb_A Ferric uptake regulatio 41.0 98 0.0034 22.2 7.2 42 311-352 25-67 (136)
303 2ion_A PDCD4, programmed cell 40.4 65 0.0022 24.0 5.7 64 201-265 12-77 (152)
304 3eyy_A Putative iron uptake re 40.4 94 0.0032 22.7 6.7 58 294-353 10-67 (145)
305 2d2s_A Exocyst complex compone 40.1 1.5E+02 0.005 24.0 9.4 87 170-259 25-117 (235)
306 2w57_A Ferric uptake regulatio 38.5 1.2E+02 0.004 22.4 7.0 36 318-353 32-67 (150)
307 2wvi_A Mitotic checkpoint seri 38.1 1.3E+02 0.0044 22.7 10.4 50 252-301 79-129 (164)
308 2fu4_A Ferric uptake regulatio 38.0 77 0.0026 20.2 6.7 34 319-352 33-66 (83)
309 2rfa_A Transient receptor pote 38.0 1.3E+02 0.0043 23.5 7.9 53 311-364 159-220 (232)
310 2fe3_A Peroxide operon regulat 37.5 1.2E+02 0.004 22.1 8.5 60 294-354 13-72 (145)
311 3aji_A 26S proteasome non-ATPa 37.4 1.4E+02 0.0049 23.1 10.7 12 141-152 16-27 (231)
312 1ug3_A EIF4GI, eukaryotic prot 36.8 2E+02 0.0069 24.6 11.0 13 374-386 273-285 (339)
313 1ug3_A EIF4GI, eukaryotic prot 36.8 1.6E+02 0.0054 25.3 8.5 23 203-225 16-38 (339)
314 2rfa_A Transient receptor pote 36.7 1.3E+02 0.0046 23.4 7.8 20 279-298 162-181 (232)
315 2ijq_A Hypothetical protein; s 36.6 1.3E+02 0.0046 22.5 7.8 52 245-296 44-103 (161)
316 2xig_A Ferric uptake regulatio 36.3 1.3E+02 0.0043 22.2 8.2 60 294-354 18-77 (150)
317 3eyy_A Putative iron uptake re 36.3 1.2E+02 0.0042 22.0 7.1 61 79-143 7-67 (145)
318 3eiq_C Programmed cell death p 35.4 2.2E+02 0.0075 24.7 17.5 23 59-81 58-80 (358)
319 3b7b_A Euchromatic histone-lys 35.2 1.6E+02 0.0054 23.0 8.0 15 350-364 219-233 (237)
320 2fe3_A Peroxide operon regulat 35.1 1.2E+02 0.004 22.2 6.5 61 258-319 12-72 (145)
321 2xig_A Ferric uptake regulatio 35.0 1.3E+02 0.0043 22.1 6.7 61 258-319 17-77 (150)
322 4fke_A Aminopeptidase N; zinc 34.9 3.6E+02 0.012 26.9 16.0 147 144-297 705-860 (909)
323 1lsh_A Lipovitellin (LV-1N, LV 34.5 3.9E+02 0.013 27.3 21.9 176 108-294 288-479 (1056)
324 3b7b_A Euchromatic histone-lys 34.1 83 0.0028 24.7 6.1 18 314-331 218-235 (237)
325 2qx5_A Nucleoporin NIC96; mRNA 33.7 3.2E+02 0.011 26.1 11.8 28 55-82 353-383 (661)
326 1wgl_A TOLL-interacting protei 33.6 80 0.0027 19.0 5.4 27 136-162 31-57 (59)
327 3f3f_C Nucleoporin NUP85; stru 33.2 1.6E+02 0.0054 27.4 8.1 24 94-117 519-542 (570)
328 2o03_A Probable zinc uptake re 32.3 1.1E+02 0.0037 21.8 5.8 45 309-353 16-60 (131)
329 2ijq_A Hypothetical protein; s 32.3 1.6E+02 0.0055 22.1 7.6 61 306-367 36-104 (161)
330 2yru_A Steroid receptor RNA ac 32.2 52 0.0018 23.2 3.8 41 151-191 49-89 (118)
331 1jr3_A DNA polymerase III subu 31.7 2.4E+02 0.0083 24.0 10.0 29 168-197 251-279 (373)
332 3ltj_A Alpharep-4; protein eng 31.3 1.7E+02 0.0059 22.2 20.4 18 196-213 119-136 (201)
333 1bd8_A P19INK4D CDK4/6 inhibit 31.0 65 0.0022 23.3 4.6 13 141-153 12-24 (156)
334 2b7e_A PRE-mRNA processing pro 30.7 18 0.00063 21.9 1.1 28 145-173 3-31 (59)
335 1mzb_A Ferric uptake regulatio 30.6 1.2E+02 0.0042 21.7 5.9 60 259-319 9-69 (136)
336 3t8k_A Uncharacterized protein 30.4 1.8E+02 0.0061 22.1 9.0 17 251-267 92-108 (186)
337 3ljn_A Hypothetical protein; a 30.4 2.3E+02 0.0079 24.0 8.8 81 277-363 179-266 (364)
338 2nsz_A Programmed cell death p 30.3 1.5E+02 0.0051 21.1 9.4 64 201-265 10-75 (129)
339 4gq2_M Nucleoporin NUP120; bet 30.2 4.3E+02 0.015 26.5 12.3 131 204-352 816-950 (950)
340 2fu4_A Ferric uptake regulatio 30.0 1.1E+02 0.0037 19.4 5.9 60 258-318 7-67 (83)
341 1wty_A Hypothetical protein TT 29.4 1.5E+02 0.005 20.8 7.1 77 282-365 2-79 (119)
342 3jxi_A Vanilloid receptor-rela 29.3 54 0.0019 26.4 4.2 16 207-222 146-161 (260)
343 3mwm_A ZUR, putative metal upt 28.4 1E+02 0.0034 22.3 5.1 43 310-352 20-62 (139)
344 3qil_A Clathrin heavy chain 1; 28.3 76 0.0026 22.5 4.0 51 272-325 36-86 (125)
345 4fke_A Aminopeptidase N; zinc 28.2 4.6E+02 0.016 26.1 18.0 156 168-330 691-858 (909)
346 3ltm_A Alpha-REP4; protein eng 27.4 2.1E+02 0.0071 21.9 21.1 153 89-260 31-183 (211)
347 1oai_A Nuclear RNA export fact 27.2 33 0.0011 20.7 1.8 29 64-92 28-57 (59)
348 3pvs_A Replication-associated 26.5 3.5E+02 0.012 24.2 13.2 152 178-331 166-358 (447)
349 2w57_A Ferric uptake regulatio 26.5 1.4E+02 0.0049 21.9 5.7 61 258-319 7-68 (150)
350 2o03_A Probable zinc uptake re 26.5 1E+02 0.0035 21.9 4.8 44 239-282 16-59 (131)
351 2keb_A DNA polymerase subunit 26.0 1.6E+02 0.0053 20.0 6.7 60 320-381 26-90 (101)
352 1bd8_A P19INK4D CDK4/6 inhibit 25.5 1.3E+02 0.0044 21.5 5.5 17 100-116 8-24 (156)
353 3dd4_A KV channel-interacting 25.5 2.5E+02 0.0084 22.1 11.6 132 89-223 82-227 (229)
354 1oyz_A Hypothetical protein YI 24.9 2.7E+02 0.0094 22.4 21.1 122 196-331 140-262 (280)
355 3ljn_A Hypothetical protein; a 24.7 1.8E+02 0.0062 24.7 7.0 219 89-328 16-266 (364)
356 1n11_A Ankyrin; clathrin, BAND 24.7 2.4E+02 0.0082 24.7 8.0 237 60-326 16-265 (437)
357 2etb_A Transient receptor pote 24.5 1.1E+02 0.0037 24.4 5.3 54 170-224 6-69 (256)
358 3lxu_X Tripeptidyl-peptidase 2 24.5 4.3E+02 0.015 27.7 10.2 79 284-365 1265-1343(1354)
359 2pnn_A Transient receptor pote 24.4 85 0.0029 25.5 4.6 21 173-193 20-40 (273)
360 3l6a_A Eukaryotic translation 24.0 3.5E+02 0.012 23.4 11.9 25 93-117 14-38 (364)
361 2zu6_B Programmed cell death p 23.9 3.3E+02 0.011 23.0 14.2 25 94-118 6-30 (307)
362 2r9g_A AAA ATPase, central reg 23.8 2.6E+02 0.009 21.8 9.8 18 141-158 27-44 (204)
363 3mv2_A Coatomer subunit alpha; 23.6 3.4E+02 0.012 23.1 11.1 53 142-194 184-238 (325)
364 3mwm_A ZUR, putative metal upt 23.3 1.2E+02 0.004 22.0 4.6 47 168-214 18-64 (139)
365 1qsa_A Protein (soluble lytic 22.9 4.8E+02 0.017 24.6 25.8 308 66-399 17-345 (618)
366 1s1e_A KV channel interacting 22.9 2.7E+02 0.0094 21.7 12.1 114 107-223 88-214 (224)
367 3hzj_A Rabgap1L, RAB GTPase-ac 22.7 2.8E+02 0.0096 23.2 7.6 44 255-298 176-219 (310)
368 2r9g_A AAA ATPase, central reg 22.5 2.8E+02 0.0096 21.7 9.7 53 281-334 27-84 (204)
369 2yru_A Steroid receptor RNA ac 22.3 1.5E+02 0.0051 20.9 4.7 19 278-296 71-89 (118)
370 3v31_A Ankyrin repeat family A 22.2 2.3E+02 0.0077 20.5 7.9 14 350-363 144-157 (167)
371 3ygs_P Procaspase 9; apoptosis 21.9 1.8E+02 0.0063 19.4 6.3 34 283-320 52-85 (97)
372 2etb_A Transient receptor pote 21.8 2.1E+02 0.0073 22.6 6.5 13 209-221 144-156 (256)
373 3l6a_A Eukaryotic translation 21.3 4E+02 0.014 23.1 12.4 24 58-81 15-38 (364)
374 3mv2_A Coatomer subunit alpha; 21.2 3.8E+02 0.013 22.8 10.3 28 341-368 210-237 (325)
375 2dzn_A Probable 26S proteasome 21.2 2.4E+02 0.0081 21.7 6.6 17 64-80 8-24 (228)
376 2pnn_A Transient receptor pote 21.1 1.5E+02 0.0052 23.9 5.5 16 66-81 21-36 (273)
377 2zu6_B Programmed cell death p 20.7 3.8E+02 0.013 22.6 12.3 69 306-375 169-239 (307)
378 3d9h_A CDNA FLJ77766, highly s 20.4 1.1E+02 0.0037 25.2 4.5 16 100-115 65-80 (285)
379 3utm_A Tankyrase-1; tankyrase, 20.4 3.7E+02 0.013 22.3 14.1 116 98-222 28-145 (351)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1e-34 Score=270.69 Aligned_cols=207 Identities=15% Similarity=0.164 Sum_probs=160.7
Q ss_pred HHHHHHHhhcccCCCCccH-HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC---------h
Q 015590 145 SKAIETLFDMPSYNCWPSV-KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGN---------L 214 (404)
Q Consensus 145 ~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~ 214 (404)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445555666666655443 35777888888888888888888888888888888888888888877654 5
Q ss_pred HHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015590 215 EAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERM 294 (404)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 294 (404)
+.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 77888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 015590 295 KGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQ 351 (404)
Q Consensus 295 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 351 (404)
.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888888888888888888887753
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=7.7e-35 Score=271.54 Aligned_cols=206 Identities=16% Similarity=0.177 Sum_probs=182.4
Q ss_pred hHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC---------H
Q 015590 180 GEIQGIYTSAAKLGVEID-ACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN---------V 249 (404)
Q Consensus 180 ~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~ 249 (404)
..+..+.+.+.+.+.... ..+++.+|++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 445667777777776544 346889999999999999999999999999999999999999999998765 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 015590 250 EEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 250 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 329 (404)
++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhcc
Q 015590 330 ICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTF 385 (404)
Q Consensus 330 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 385 (404)
.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999998765
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.2e-32 Score=260.25 Aligned_cols=355 Identities=8% Similarity=-0.073 Sum_probs=258.5
Q ss_pred CCCCCCCCCccchhhcccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 015590 35 SPSASHQDSDHHAYKLNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIM 114 (404)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 114 (404)
..+++...++..+...+.+++..|+.++..|.+.|++++|+.+|+++.. ..|+..++..++.+|.+.|++++|..+|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 3455566666777778888899999999999999999999999999974 4678899999999999999999999999
Q ss_pred HHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhccc-C--------------CCCccHHHHHHHHHHHHhcCcH
Q 015590 115 QRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPS-Y--------------NCWPSVKTFNLVLNLLVSAKLY 179 (404)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~--------------~~~p~~~~~~~ll~~~~~~~~~ 179 (404)
+.+... +.+...+..++..+.. .|++++|+++|+++.. . |.+++..+|+.++.+|.+.|++
T Consensus 141 ~~~~~~---~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 141 TKEDLY---NRSSACRYLAAFCLVK-LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHTCGG---GTCHHHHHHHHHHHHH-TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhcc---ccchhHHHHHHHHHHH-HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 987533 2334445555566665 9999999999996433 2 3345688999999999999999
Q ss_pred hHHHHHHHHHHHcCC-----------------------------------------------------------------
Q 015590 180 GEIQGIYTSAAKLGV----------------------------------------------------------------- 194 (404)
Q Consensus 180 ~~a~~~~~~~~~~g~----------------------------------------------------------------- 194 (404)
++|.++|+++.+.+.
T Consensus 217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999999976541
Q ss_pred -----CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 015590 195 -----EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTV 269 (404)
Q Consensus 195 -----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 269 (404)
+++..+++.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|..+|+++.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 1344555556666666666666666666665544 3455556666666666666666666666665432 23677
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015590 270 TFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLC 349 (404)
Q Consensus 270 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 349 (404)
+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 88888888888888888888888887653 2356788888888888899999999988888753 457788888888888
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhhhh
Q 015590 350 NQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETVDS 401 (404)
Q Consensus 350 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 401 (404)
+.|++++|.++|+++.+.. ..+..+|..+...|...|+.+++..+++.+.+
T Consensus 453 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8999999999998888652 23577888888888888888888888777644
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-32 Score=262.60 Aligned_cols=362 Identities=8% Similarity=-0.029 Sum_probs=221.6
Q ss_pred hhhhccCCCCCCCCCccchhhc--ccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCC--------------CCCCCHH
Q 015590 29 RTFALASPSASHQDSDHHAYKL--NHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRK--------------DYNPNEA 92 (404)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------------~~~p~~~ 92 (404)
.+...+...+....+..++... .+++..+|+.++.+|.+.|++++|+.+|+++.... +.+++..
T Consensus 122 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (597)
T 2xpi_A 122 WLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS 201 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHH
Confidence 3445556667777777777766 56788899999999999999999999999543322 2344688
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHH--------------------------------------
Q 015590 93 LYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVI-------------------------------------- 134 (404)
Q Consensus 93 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-------------------------------------- 134 (404)
+|..++.+|.+.|++++|.++|+++...+ |.+...+..+
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVD---AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 99999999999999999999999987654 2222221111
Q ss_pred HHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCC--------------------
Q 015590 135 KIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGV-------------------- 194 (404)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-------------------- 194 (404)
...+.+.|++++|.++|+++.+. +++..+|+.++.++.+.|++++|.++|+++.+.+.
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH
Confidence 11112367778888888877764 46777788888888888888888888887776541
Q ss_pred -------------CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015590 195 -------------EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMES 261 (404)
Q Consensus 195 -------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 261 (404)
+.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+
T Consensus 357 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 357 KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2234445555555555555555555555554432 33445555555555555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC
Q 015590 262 EGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE----RMSPS 337 (404)
Q Consensus 262 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~ 337 (404)
.+. .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+
T Consensus 436 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 436 LFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp TTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred hCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 432 244555555555555555555555555555442 124455555555555555555555555555543 33444
Q ss_pred --HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhh
Q 015590 338 --FVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETV 399 (404)
Q Consensus 338 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 399 (404)
..+|..++.+|.+.|++++|.++++++.+.+ ..+..+|..+..+|...|+++.+...++.+
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4555555555555555555555555555432 224455555555555555555555555544
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1e-24 Score=198.91 Aligned_cols=302 Identities=11% Similarity=-0.042 Sum_probs=180.6
Q ss_pred CCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHH
Q 015590 53 KDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYN 132 (404)
Q Consensus 53 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 132 (404)
.+..+|..+...+.+.|++++|+..|+++++.. +.+..+|..+..++.+.|++++|.+.++.+.... |+....+.
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 139 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---PDLYCVRS 139 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---TTCTHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHH
Confidence 344456666666666666666666666665432 3344556666666666666666666666665443 33334444
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC
Q 015590 133 VIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENG 212 (404)
Q Consensus 133 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 212 (404)
.+...+...|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 140 DLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 44444444566666666666665533 1234566666666666666666666666666654 344556666666666666
Q ss_pred ChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015590 213 NLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLE 292 (404)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 292 (404)
++++|...|++..+.. +.+..++..+...|.+.|++++|...|+++.+.+.. +..+|..+...+.+.|++++|...|+
T Consensus 218 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 218 IFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666655543 334556666666666666666666666666655322 34556666666666666666666666
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 293 RMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 293 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
++.+.. +.+..++..+...+.+.|++++|.+.++++.+. .+.+..++..+..+|.+.|++++|...|+++.
T Consensus 296 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 296 TALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666542 334556666666666666666666666666553 23345566666666666666666666666666
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.4e-24 Score=198.11 Aligned_cols=334 Identities=14% Similarity=0.040 Sum_probs=286.7
Q ss_pred CCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChH-HHHH
Q 015590 54 DWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDG-FFYN 132 (404)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 132 (404)
+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|...|+++.... |+.. .+.+
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~ 106 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK---PDFIDGYIN 106 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---cchHHHHHH
Confidence 33455667778899999999999999997653 6788999999999999999999999999987654 4444 4455
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcccCCCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 015590 133 VIKIYGNMAGRISKAIETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCEN 211 (404)
Q Consensus 133 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 211 (404)
+...+.. .|++++|.+.|+++.+.+ |+ ...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...|.+.
T Consensus 107 l~~~~~~-~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 182 (388)
T 1w3b_A 107 LAAALVA-AGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp HHHHHHH-HSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 5555555 999999999999998754 54 4577888889999999999999999999875 55688999999999999
Q ss_pred CChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 015590 212 GNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLL 291 (404)
Q Consensus 212 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 291 (404)
|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++....... +..++..+...|...|++++|...|
T Consensus 183 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 260 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998876 567788999999999999999999999998876433 5788999999999999999999999
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 015590 292 ERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVP 371 (404)
Q Consensus 292 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 371 (404)
+++.+.+ +.+..+|..+...+.+.|++++|.+.++++.+. .+.+..++..+...+...|++++|...++++.+ ..|
T Consensus 261 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p 336 (388)
T 1w3b_A 261 RRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFP 336 (388)
T ss_dssp HHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCT
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 9999874 225678999999999999999999999999886 366888999999999999999999999999985 445
Q ss_pred -CHHhHHHHHHhhccCCCCcchhhHHHhhhhh
Q 015590 372 -RMGMWREIVGCVTFGKDNRNRVYVTETVDSL 402 (404)
Q Consensus 372 -~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
+..++..+..++...|+.+.+...++.+-++
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4668888999999999999999888776543
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.8e-23 Score=194.42 Aligned_cols=313 Identities=11% Similarity=0.026 Sum_probs=259.9
Q ss_pred CCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHH
Q 015590 53 KDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYN 132 (404)
Q Consensus 53 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 132 (404)
.+...|..+...+.+.|++++|+..|+.+++.. +.+..+|..+..++...|++++|...++.+.... |.....+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 98 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK---MDFTAARL 98 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCcHHHHH
Confidence 456678889999999999999999999998653 5678999999999999999999999999988765 44444444
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcccCCCCcc-H---HHHHHH------------HHHHHhcCcHhHHHHHHHHHHHcCCCC
Q 015590 133 VIKIYGNMAGRISKAIETLFDMPSYNCWPS-V---KTFNLV------------LNLLVSAKLYGEIQGIYTSAAKLGVEI 196 (404)
Q Consensus 133 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~ 196 (404)
.+...+...|++++|.+.|+++.+.+ |+ . ..+..+ ...+.+.|++++|...++.+.+.. +.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 175 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VW 175 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 44444444999999999999998865 44 3 555555 444889999999999999999875 66
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--
Q 015590 197 DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNIL-- 274 (404)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-- 274 (404)
+..++..+..+|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|+..|+++.+.... +...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHH
Confidence 88899999999999999999999999998765 667899999999999999999999999999876332 34444444
Q ss_pred ----------HHHHHcCCCHHHHHHHHHHHhhCCCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 015590 275 ----------ISGLRKQGKVEEGMKLLERMKGKGCYPN-----SASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFV 339 (404)
Q Consensus 275 ----------i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 339 (404)
...+.+.|++++|...|+++.+. .|+ ...|..+...+.+.|++++|++.++++.+.. +.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~ 330 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVN 330 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHH
Confidence 78899999999999999999886 344 4578889999999999999999999998752 44788
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH-hHHHHH
Q 015590 340 SYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMG-MWREIV 380 (404)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll 380 (404)
.|..+..+|...|++++|...++++.+ +.|+.. .+..+-
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 999999999999999999999999994 666643 444443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.9e-21 Score=180.66 Aligned_cols=302 Identities=12% Similarity=0.068 Sum_probs=250.2
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHH-HHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHH
Q 015590 88 NPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGF-FYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTF 166 (404)
Q Consensus 88 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 166 (404)
+.+...+..+...+.+.|++++|..+|+.+.... |.+.. +..+...+.. .|++++|+..|+++.+.+ +.+..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~-p~~~~~~ 97 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLA-MGKSKAALPDLTKVIQLK-MDFTAAR 97 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 5567889999999999999999999999987654 34444 4444555555 999999999999998865 2356789
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCH---hHHHHH------------HHHHHhcCChHHHHHHHHHchhCCCCC
Q 015590 167 NLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDA---CCLNIL------------LKGLCENGNLEAAFYVLDEFPKQNCEP 231 (404)
Q Consensus 167 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~ 231 (404)
..+...+.+.|++++|.+.|+.+.+.. +.+. ..+..+ ...+.+.|++++|...|+.+.+.. +.
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 175 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VW 175 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 999999999999999999999999864 3344 555555 444899999999999999998765 66
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCC-hhhHHHH-
Q 015590 232 NVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPN-SASYQEV- 309 (404)
Q Consensus 232 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l- 309 (404)
+..++..+...|.+.|++++|...|+++.+... .+..+|..+...|...|++++|...|+++.+. .|+ ...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 252 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYK 252 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHH
Confidence 888999999999999999999999999987643 36889999999999999999999999999876 333 4444444
Q ss_pred -----------HHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH
Q 015590 310 -----------LYGLLDKKRFPEAKELVGRMICERMSPS-----FVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRM 373 (404)
Q Consensus 310 -----------i~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 373 (404)
...+.+.|++++|.+.++++.+. .|+ ...|..+..++.+.|++++|...++++.+.. ..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~ 329 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH
Confidence 78899999999999999999875 454 4578888999999999999999999998642 2357
Q ss_pred HhHHHHHHhhccCCCCcchhhHHHhhhhh
Q 015590 374 GMWREIVGCVTFGKDNRNRVYVTETVDSL 402 (404)
Q Consensus 374 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
..|..+..+|...|+.+.+...++..-++
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 78999999999999999998888776543
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.4e-19 Score=162.39 Aligned_cols=311 Identities=10% Similarity=0.022 Sum_probs=252.9
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHH
Q 015590 57 SPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKI 136 (404)
Q Consensus 57 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (404)
.|..+...+...|++++|+..|+.+++.. +.+..++..+...+...|++++|...++.+.... |.....+..+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~ 79 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK---MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCcchHHHHHHH
Confidence 45667778899999999999999998753 5578899999999999999999999999987654 334444444444
Q ss_pred HHhhcCCHHHHHHHHhhcccCCCCc----cHHHHHHH------------HHHHHhcCcHhHHHHHHHHHHHcCCCCCHhH
Q 015590 137 YGNMAGRISKAIETLFDMPSYNCWP----SVKTFNLV------------LNLLVSAKLYGEIQGIYTSAAKLGVEIDACC 200 (404)
Q Consensus 137 ~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 200 (404)
.+...|++++|...|++..+.. | +...+..+ ...+...|++++|.+.++.+.+.. +.+..+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 156 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAEL 156 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHH
Confidence 4445999999999999998865 5 34455544 578889999999999999999875 667889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--------
Q 015590 201 LNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFN-------- 272 (404)
Q Consensus 201 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-------- 272 (404)
+..+...|...|++++|...++...+.. +.+..+|..+...|...|++++|...|++..+.... +...+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHH
Confidence 9999999999999999999999998875 678889999999999999999999999999876432 333332
Q ss_pred ----HHHHHHHcCCCHHHHHHHHHHHhhCCCCCC-h----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 015590 273 ----ILISGLRKQGKVEEGMKLLERMKGKGCYPN-S----ASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKK 343 (404)
Q Consensus 273 ----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 343 (404)
.+...+.+.|++++|...+++..+.. |+ . ..+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 311 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 23666889999999999999998863 33 2 235567788999999999999999998862 447889999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HhHHHHHHh
Q 015590 344 LIHGLCNQKLVEDVDWVLKKMVQQGFVPRM-GMWREIVGC 382 (404)
Q Consensus 344 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~ 382 (404)
+...+...|++++|...|++.. .+.|+. ..+..+..+
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~--~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQ--EHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH--TTCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH--hcCCCChHHHHHHHHH
Confidence 9999999999999999999999 455663 344444443
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.1e-20 Score=173.85 Aligned_cols=358 Identities=9% Similarity=-0.077 Sum_probs=280.4
Q ss_pred CCCCCCCccchhhcc--cCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 015590 37 SASHQDSDHHAYKLN--HKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIM 114 (404)
Q Consensus 37 ~~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 114 (404)
.+....+...|.+.- .|+...|..+..++.+.|++++|+..|+.+++.. +.+..++..+..++.+.|++++|...|
T Consensus 19 ~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344555555555432 3677888889999999999999999999998753 556789999999999999999999999
Q ss_pred HHHHhcccCC----------------------------------------------------------------------
Q 015590 115 QRIKVEKLCR---------------------------------------------------------------------- 124 (404)
Q Consensus 115 ~~~~~~~~~~---------------------------------------------------------------------- 124 (404)
+.+.......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence 9987654100
Q ss_pred ------CChHHHHH-HHHHHHh--hcCCHHHHHHHHhhccc-----CCC--------CccHHHHHHHHHHHHhcCcHhHH
Q 015590 125 ------FSDGFFYN-VIKIYGN--MAGRISKAIETLFDMPS-----YNC--------WPSVKTFNLVLNLLVSAKLYGEI 182 (404)
Q Consensus 125 ------~~~~~~~~-~l~~~~~--~~g~~~~A~~~~~~m~~-----~~~--------~p~~~~~~~ll~~~~~~~~~~~a 182 (404)
+++...+. ....+.. ..|++++|...|+++.+ ..- +.+..++..+...+...|++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 00011111 1111111 26899999999998876 311 12345788888999999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 183 QGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 183 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
...++.+.+.. |+..++..+...|...|++++|...++.+.+.. +.+..+|..+...|...|++++|...|++..+.
T Consensus 257 ~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 333 (514)
T 2gw1_A 257 HEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333 (514)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999875 338889999999999999999999999988775 567788999999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----
Q 015590 263 GIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERM-SPS---- 337 (404)
Q Consensus 263 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~---- 337 (404)
... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+... .++
T Consensus 334 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 411 (514)
T 2gw1_A 334 DPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVG 411 (514)
T ss_dssp CSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSC
T ss_pred Chh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHH
Confidence 544 56788889999999999999999999988763 22567888999999999999999999999876421 112
Q ss_pred HHHHHHHHHHHHc---CCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhhhhh
Q 015590 338 FVSYKKLIHGLCN---QKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETVDSL 402 (404)
Q Consensus 338 ~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
...+..+...+.. .|++++|...++++.+.. ..+..++..+..++...|+.+.+...++..-++
T Consensus 412 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp SHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3478888999999 999999999999998653 234567778888889999998888877765443
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=4.7e-19 Score=157.29 Aligned_cols=291 Identities=11% Similarity=-0.040 Sum_probs=196.0
Q ss_pred CCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHH
Q 015590 53 KDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYN 132 (404)
Q Consensus 53 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 132 (404)
.+...+......+...|++++|+.+|+++++.. +.+...+..++..+...|++++|..+++.+.... |.+...+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ 94 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY---PSNPVSWF 94 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSTHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHH
Confidence 355566777777888888888888888887654 3445566667777788888888888888876653 33333333
Q ss_pred HHHHHHhhcC-CHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 015590 133 VIKIYGNMAG-RISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCEN 211 (404)
Q Consensus 133 ~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 211 (404)
.+...+...| ++++|.+.|++..+.. +.+...|..+...+...|++++|.+.++.+.+.. +.+...+..+...|...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 3333333367 7888888888877654 2345677777788888888888888888877764 34456666677778888
Q ss_pred CChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHcCCC
Q 015590 212 GNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEG--------IDADTVTFNILISGLRKQGK 283 (404)
Q Consensus 212 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~ 283 (404)
|++++|...+++..+.. +.+..++..+...+...|++++|...|++..+.. ...+..++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 88888888888777665 5566777777777888888888888877776531 12234566677777777777
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HcCCC
Q 015590 284 VEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGL-CNQKL 353 (404)
Q Consensus 284 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~ 353 (404)
+++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..++ ...|+
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 777777777766553 2245566666777777777777777777766532 23455555555555 34444
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=5.3e-19 Score=156.90 Aligned_cols=293 Identities=8% Similarity=-0.056 Sum_probs=240.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHH
Q 015590 87 YNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTF 166 (404)
Q Consensus 87 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 166 (404)
.+.+...+..+...+...|++++|.++++.+.... +............+.. .|++++|...++++.+.. +.+...|
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~-~~~~~~~ 93 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVE-LNKANELFYLSHKLVDLY-PSNPVSW 93 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHH-HTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHH-hhhHHHHHHHHHHHHHhC-cCCHHHH
Confidence 35566778888899999999999999999987664 2233344445555555 899999999999998754 2356789
Q ss_pred HHHHHHHHhcC-cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH
Q 015590 167 NLVLNLLVSAK-LYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE 245 (404)
Q Consensus 167 ~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 245 (404)
..+...+...| ++++|.+.++.+.+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+...|..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Confidence 99999999999 9999999999999875 5567889999999999999999999999998775 4566778889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC--------CCCChhhHHHHHHHHHhcC
Q 015590 246 KGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKG--------CYPNSASYQEVLYGLLDKK 317 (404)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g 317 (404)
.|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. ...+..++..+...+...|
T Consensus 172 ~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999999887543 67889999999999999999999999987641 1234578999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHhHHHHHHhh-ccCCCC
Q 015590 318 RFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPR-MGMWREIVGCV-TFGKDN 389 (404)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~-~~~~~~ 389 (404)
++++|.+.+++..+.. +.+...+..+...+...|++++|...+++.. .+.|+ ...+..+..++ ...|+.
T Consensus 251 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 251 KYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL--GLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT--TTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH--ccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999999998763 4467889999999999999999999999988 45564 55666666666 344443
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.7e-19 Score=168.95 Aligned_cols=335 Identities=11% Similarity=-0.001 Sum_probs=262.3
Q ss_pred hccCCCCCCCCCccchhh---cccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCC--------------------
Q 015590 32 ALASPSASHQDSDHHAYK---LNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYN-------------------- 88 (404)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------- 88 (404)
..+...+....+...+.. +.+.+..+|..+..++.+.|++++|+..|+.+.+..+..
T Consensus 47 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (514)
T 2gw1_A 47 ACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKL 126 (514)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Confidence 344445555556655554 344455678889999999999999999999998754211
Q ss_pred --------------------------------------------------------C-CHHHHHHHHHHHHh---cCCch
Q 015590 89 --------------------------------------------------------P-NEALYTLIINKLAQ---AKRFD 108 (404)
Q Consensus 89 --------------------------------------------------------p-~~~~~~~li~~~~~---~~~~~ 108 (404)
| +...+......+.. .|+++
T Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (514)
T 2gw1_A 127 KEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYD 206 (514)
T ss_dssp TTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHH
T ss_pred HHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHH
Confidence 0 12233333333333 89999
Q ss_pred HHHHHHHHHHh-----cccCC------CChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcC
Q 015590 109 AIEDIMQRIKV-----EKLCR------FSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAK 177 (404)
Q Consensus 109 ~a~~~~~~~~~-----~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 177 (404)
+|..+++.+.. ....+ +.....+..+...+...|++++|...|+++.+.+ |+...|..+...+...|
T Consensus 207 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~ 284 (514)
T 2gw1_A 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRN 284 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCC
Confidence 99999999876 31011 2223334444444444999999999999998865 55778999999999999
Q ss_pred cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015590 178 LYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLE 257 (404)
Q Consensus 178 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 257 (404)
++++|...++.+.+.. +.+..++..+...|...|++++|...|+...+.. +.+..++..+...|...|++++|...|+
T Consensus 285 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp CCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999875 5577889999999999999999999999998875 5577889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC-CCC----hhhHHHHHHHHHh---cCChhHHHHHHHHH
Q 015590 258 RMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGC-YPN----SASYQEVLYGLLD---KKRFPEAKELVGRM 329 (404)
Q Consensus 258 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~~ 329 (404)
++.+.... +...+..+...+...|++++|...++++.+... .++ ...+..+...+.. .|++++|.+.++++
T Consensus 363 ~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 99876433 567889999999999999999999999876521 112 3388999999999 99999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 015590 330 ICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMG 374 (404)
Q Consensus 330 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 374 (404)
.+.. +.+...+..+...|...|++++|...|++..+. .|+..
T Consensus 442 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 442 SKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 8763 456788899999999999999999999999964 45544
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=2e-18 Score=164.02 Aligned_cols=358 Identities=11% Similarity=-0.026 Sum_probs=261.0
Q ss_pred ccCCCCCCCCCccchhhc---ccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchH
Q 015590 33 LASPSASHQDSDHHAYKL---NHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDA 109 (404)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 109 (404)
.+...+....+...+... .+.+...|..+..+|.+.|++++|+..|+++++.. +.+..++..+..++...|++++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHH
Confidence 344456777777777653 44567778888889999999999999999998754 5578888999999999999999
Q ss_pred HHHHHHHHHhcccCCCChHH------------------------------------------------------------
Q 015590 110 IEDIMQRIKVEKLCRFSDGF------------------------------------------------------------ 129 (404)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 129 (404)
|...|+.+.... . ..+..
T Consensus 112 A~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (537)
T 3fp2_A 112 AMFDLSVLSLNG-D-FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189 (537)
T ss_dssp HHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS
T ss_pred HHHHHHHHhcCC-C-CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc
Confidence 999997442221 1 11100
Q ss_pred ------HHHHHHHHHh--------hcCCHHHHHHHHhhcccCCCCcc--------HHHHHHHHHHHHhcCcHhHHHHHHH
Q 015590 130 ------FYNVIKIYGN--------MAGRISKAIETLFDMPSYNCWPS--------VKTFNLVLNLLVSAKLYGEIQGIYT 187 (404)
Q Consensus 130 ------~~~~l~~~~~--------~~g~~~~A~~~~~~m~~~~~~p~--------~~~~~~ll~~~~~~~~~~~a~~~~~ 187 (404)
+...+..... ..|++++|..+|+++.+.. |+ ..++..+...+...|++++|...++
T Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1111111111 1247888888888887754 43 2346666777888899999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 015590 188 SAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDAD 267 (404)
Q Consensus 188 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 267 (404)
.+.+.. |+..++..+...|...|++++|...|+.+.+.. +.+..+|..+...+...|++++|...|++..+.... +
T Consensus 268 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~ 343 (537)
T 3fp2_A 268 ESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-N 343 (537)
T ss_dssp HHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-C
Confidence 998874 557888888889999999999999999887765 566788889999999999999999999998876433 5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHHHH
Q 015590 268 TVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICER-----MSPSFVSYK 342 (404)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~ 342 (404)
...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. .......+.
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 6778888889999999999999999888763 2356688888888999999999999998887542 111223344
Q ss_pred HHHHHHHcC----------CChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhhhhh
Q 015590 343 KLIHGLCNQ----------KLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETVDSL 402 (404)
Q Consensus 343 ~li~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
....++... |++++|...+++..+.. ..+...+..+-.++...|+.+.+...++..-++
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 445666666 88999999998888642 224567777778888888888887777765443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=5.3e-18 Score=152.14 Aligned_cols=301 Identities=11% Similarity=0.065 Sum_probs=242.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChH-HHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHH
Q 015590 90 NEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDG-FFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNL 168 (404)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 168 (404)
+...+..+...+...|++++|...++.+.... |.+. .+..+...+.. .|++++|...|+++.+.. +.+...|..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLA-MGKSKAALPDLTKVIALK-MDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhC-CCcchHHHH
Confidence 45677888999999999999999999987654 3444 44444455554 999999999999998754 235678999
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHHcCCC---CCHhHHHHH------------HHHHHhcCChHHHHHHHHHchhCCCCCcH
Q 015590 169 VLNLLVSAKLYGEIQGIYTSAAKLGVE---IDACCLNIL------------LKGLCENGNLEAAFYVLDEFPKQNCEPNV 233 (404)
Q Consensus 169 ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 233 (404)
+...+...|++++|...++.+.+.. + .+...+..+ ...+...|++++|...++.+.+.. +.+.
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 154 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDA 154 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCch
Confidence 9999999999999999999999874 3 345555544 588999999999999999998775 6678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHH------
Q 015590 234 RTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQ------ 307 (404)
Q Consensus 234 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~------ 307 (404)
..+..+...+...|++++|...+++..+.... +..++..+...+...|++++|...|++..+... .+...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHH
Confidence 89999999999999999999999999887433 778899999999999999999999999987631 2333333
Q ss_pred ------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-CHHhH
Q 015590 308 ------EVLYGLLDKKRFPEAKELVGRMICERMSPSF----VSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVP-RMGMW 376 (404)
Q Consensus 308 ------~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~ 376 (404)
.+...+.+.|++++|.+.++++.+.. +.+. ..+..+..++...|++++|...+++..+. .| +...|
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 309 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHH
Confidence 23666889999999999999998863 2233 23455778999999999999999999875 34 56788
Q ss_pred HHHHHhhccCCCCcchhhHHHhhhhh
Q 015590 377 REIVGCVTFGKDNRNRVYVTETVDSL 402 (404)
Q Consensus 377 ~~ll~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
..+-.++...|+.+.+...++..-++
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88888999999999998888776543
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=3.6e-19 Score=160.75 Aligned_cols=291 Identities=11% Similarity=-0.046 Sum_probs=189.5
Q ss_pred HhcCCChhHHHH-HHHHHhhCCCCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhc
Q 015590 65 FSNLRDPISVIS-VLNQYSKRKDYNP--NEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMA 141 (404)
Q Consensus 65 ~~~~~~~~~a~~-~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (404)
+...|++++|+. .|++..+...-.| +...+..+...+.+.|++++|...++.+.... |.+...+..+...+...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHC
Confidence 334567777777 7776654322222 34557777778888888888888888876553 33333333333333347
Q ss_pred CCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHH---------------HHH
Q 015590 142 GRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNI---------------LLK 206 (404)
Q Consensus 142 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---------------li~ 206 (404)
|++++|...|+++.+.+ +.+..++..+...+...|++++|...++.+.+.. +.+...+.. .+.
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTH
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 88888888888777654 2356677788888888888888888888887764 222222221 133
Q ss_pred HHHhcCChHHHHHHHHHchhCCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 015590 207 GLCENGNLEAAFYVLDEFPKQNCEP--NVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKV 284 (404)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 284 (404)
.+...|++++|...|+++.+.. +. +..++..+...|.+.|++++|...|+++.+.... +..+|..+...+...|++
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCH
Confidence 3337788888888888777654 22 4677777888888888888888888877765322 566777788888888888
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHcCCCh
Q 015590 285 EEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMS----------PSFVSYKKLIHGLCNQKLV 354 (404)
Q Consensus 285 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~ 354 (404)
++|...|+++.+.. +.+...+..+...+.+.|++++|.+.++++.+.... ....+|..+..+|...|+.
T Consensus 268 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 268 EEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 88888888877653 234667777788888888888888888777654211 1156777788888888888
Q ss_pred HHHHHHHHH
Q 015590 355 EDVDWVLKK 363 (404)
Q Consensus 355 ~~a~~~~~~ 363 (404)
++|..++++
T Consensus 347 ~~A~~~~~~ 355 (368)
T 1fch_A 347 DAYGAADAR 355 (368)
T ss_dssp GGHHHHHTT
T ss_pred HhHHHhHHH
Confidence 888777653
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=6.7e-21 Score=183.28 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=63.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHch---hCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015590 198 ACCLNILLKGLCENGNLEAAFYVLDEFP---KQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNIL 274 (404)
Q Consensus 198 ~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 274 (404)
..||+++|++|++.|++++|.++|++|. ..|+.||++|||+||++|++.|++++|.++|++|.+.|+.||.+|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3455555555555555555555554433 2345555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCC-HHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 015590 275 ISGLRKQGK-VEEGMKLLERMKGKGCYPNSASYQEVLYGLL 314 (404)
Q Consensus 275 i~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 314 (404)
|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 555555554 2455555555555555555555555554433
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=1.2e-18 Score=157.26 Aligned_cols=234 Identities=14% Similarity=0.011 Sum_probs=129.7
Q ss_pred CCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHH
Q 015590 53 KDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYN 132 (404)
Q Consensus 53 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 132 (404)
.+...|..+...+.+.|++++|+..|+++++.. +.+..+|..+...+...|++++|...|+++.... |.+...+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 137 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALM 137 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHH
Confidence 345567777777777777777777777776543 4566777777777777777777777777766543 33333333
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcccCCCCccHH-HH----------HHHHHHHHhcCcHhHHHHHHHHHHHcCCCC--CHh
Q 015590 133 VIKIYGNMAGRISKAIETLFDMPSYNCWPSVK-TF----------NLVLNLLVSAKLYGEIQGIYTSAAKLGVEI--DAC 199 (404)
Q Consensus 133 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~----------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~ 199 (404)
.+...+...|++++|+..|+++.+.. |+.. .+ ..+...+...|++++|.+.++++.+.. +. +..
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 214 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPD 214 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHH
Confidence 33333333777777777777766532 3221 12 223455555666666666666665543 22 455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015590 200 CLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLR 279 (404)
Q Consensus 200 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 279 (404)
++..+...|...|++++|...|++..+.. +.+..+|..+...|.+.|++++|...|++..+.... +..+|..+...|.
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHH
Confidence 55555555555566666666555555443 334555555555555555555555555555544211 3444555555555
Q ss_pred cCCCHHHHHHHHHHHhh
Q 015590 280 KQGKVEEGMKLLERMKG 296 (404)
Q Consensus 280 ~~g~~~~a~~~~~~m~~ 296 (404)
+.|++++|...|+++.+
T Consensus 293 ~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHTCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 55555555555555443
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=5.4e-18 Score=153.00 Aligned_cols=265 Identities=14% Similarity=0.032 Sum_probs=218.7
Q ss_pred CCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHH-H
Q 015590 54 DWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFY-N 132 (404)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~ 132 (404)
+...+..+...+.+.|++++|+..|+++++.. +.+..++..+...+...|++++|...++.+.... |.+...+ .
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~ 137 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK---PDNQTALMA 137 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC---CCCHHHHHH
Confidence 56778889999999999999999999998764 5678899999999999999999999999987664 3344444 4
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcccCCCCccH-HHHHH---------------HHHHHHhcCcHhHHHHHHHHHHHcCCCC
Q 015590 133 VIKIYGNMAGRISKAIETLFDMPSYNCWPSV-KTFNL---------------VLNLLVSAKLYGEIQGIYTSAAKLGVEI 196 (404)
Q Consensus 133 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 196 (404)
+...+.. .|++++|.+.|+++.... |+. ..+.. .+..+...|++++|...++.+.+.. +.
T Consensus 138 l~~~~~~-~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~ 213 (368)
T 1fch_A 138 LAVSFTN-ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PT 213 (368)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cC
Confidence 4445554 999999999999988754 332 22221 2344448999999999999999875 33
Q ss_pred --CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015590 197 --DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNIL 274 (404)
Q Consensus 197 --~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 274 (404)
+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|...|+++.+... .+...+..+
T Consensus 214 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l 291 (368)
T 1fch_A 214 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNL 291 (368)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 58899999999999999999999999988765 56788999999999999999999999999987643 367889999
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhCCCC----------CChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 015590 275 ISGLRKQGKVEEGMKLLERMKGKGCY----------PNSASYQEVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 275 i~~~~~~g~~~~a~~~~~~m~~~~~~----------p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 329 (404)
...|.+.|++++|...|++..+.... ....+|..+..++...|+.++|..++.+.
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999999999999998765211 12678999999999999999999988744
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=5.7e-18 Score=160.80 Aligned_cols=255 Identities=11% Similarity=0.023 Sum_probs=208.1
Q ss_pred CCchHHHHHHHHHHhcccCCCChHH-------HHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcC
Q 015590 105 KRFDAIEDIMQRIKVEKLCRFSDGF-------FYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAK 177 (404)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 177 (404)
|++++|..+++.+.... |.+.. .+..+..++...|++++|...|++..+.. |+...|..+...+...|
T Consensus 216 ~~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 290 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN---TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKE 290 (537)
T ss_dssp HHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHHHHC---CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhc
Confidence 47888999999887654 33221 23333334444899999999999998854 77788999999999999
Q ss_pred cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015590 178 LYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLE 257 (404)
Q Consensus 178 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 257 (404)
++++|...++.+.+.. +.+..++..+...|...|++++|...|+...+.. +.+..+|..+...|...|++++|...|+
T Consensus 291 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 368 (537)
T 3fp2_A 291 NSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFN 368 (537)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999875 5678899999999999999999999999998775 5567889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC-----CCCChhhHHHHHHHHHhc----------CChhHH
Q 015590 258 RMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKG-----CYPNSASYQEVLYGLLDK----------KRFPEA 322 (404)
Q Consensus 258 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~a 322 (404)
++.+.... +...+..+...+...|++++|...|+++.+.. .......+......+... |++++|
T Consensus 369 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 369 ETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 99887433 56788999999999999999999999987652 111122244445667777 999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 015590 323 KELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQG 368 (404)
Q Consensus 323 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 368 (404)
...++++.+.. +.+...+..+..+|...|++++|...|++..+..
T Consensus 448 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 448 IKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999998863 4567889999999999999999999999999653
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=4.4e-18 Score=150.79 Aligned_cols=234 Identities=11% Similarity=0.013 Sum_probs=139.2
Q ss_pred CCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHH
Q 015590 53 KDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYN 132 (404)
Q Consensus 53 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 132 (404)
.+...|......+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...++.+.... |.+...+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~ 93 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHA 93 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cCCHHHHH
Confidence 456677888888999999999999999987653 4577888888899999999999999999887654 33333333
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcccCCCCccH-HHHHHH--------------HH-HHHhcCcHhHHHHHHHHHHHcCCCC
Q 015590 133 VIKIYGNMAGRISKAIETLFDMPSYNCWPSV-KTFNLV--------------LN-LLVSAKLYGEIQGIYTSAAKLGVEI 196 (404)
Q Consensus 133 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~g~~~ 196 (404)
.+...+...|++++|.+.|++..+.. |+. ..+..+ .. .+...|++++|.+.++.+.+.. +.
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 170 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PN 170 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CC
Confidence 33333334888888888888877643 332 223222 11 2444555555666555555543 33
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015590 197 DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILIS 276 (404)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 276 (404)
+..++..+...|.+.|++++|...++++.+.. +.+..+|..+...+...|++++|...|+++.+.... +..++..+..
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 248 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAV 248 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 45555555555555555555555555554443 334445555555555555555555555555443211 3344444455
Q ss_pred HHHcCCCHHHHHHHHHHHhh
Q 015590 277 GLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 277 ~~~~~g~~~~a~~~~~~m~~ 296 (404)
.|...|++++|...|++..+
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 55555555555555554443
No 22
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.9e-20 Score=180.12 Aligned_cols=153 Identities=14% Similarity=0.071 Sum_probs=127.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhH
Q 015590 230 EPNVRTYSTLMHGLCEKGNVEEAFGLLERMES---EGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASY 306 (404)
Q Consensus 230 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 306 (404)
.--..|||++|++|++.|++++|..+|++|.+ .|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34567999999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC------HHhHHHH
Q 015590 307 QEVLYGLLDKKRF-PEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPR------MGMWREI 379 (404)
Q Consensus 307 ~~li~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~l 379 (404)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.+ +++..+++ .-++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999985 789999999999999999999999987665543 33333333 2366665 3344455
Q ss_pred HHhhccCC
Q 015590 380 VGCVTFGK 387 (404)
Q Consensus 380 l~~~~~~~ 387 (404)
..-|...+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 55555444
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=2.2e-18 Score=155.53 Aligned_cols=266 Identities=12% Similarity=-0.060 Sum_probs=202.4
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHH
Q 015590 90 NEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLV 169 (404)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 169 (404)
+...+..+...+.+.|++++|...|+.+.... |.+...+..+...+...|++++|+..|++..+.. +.+..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 34558888899999999999999999987654 3444444444444444899999999999988754 2357789999
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHcCCCCCH----------hHHHHHHHHHHhcCChHHHHHHHHHchhCCCCC--cHHHHH
Q 015590 170 LNLLVSAKLYGEIQGIYTSAAKLGVEIDA----------CCLNILLKGLCENGNLEAAFYVLDEFPKQNCEP--NVRTYS 237 (404)
Q Consensus 170 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~----------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~ 237 (404)
...+...|++++|...++++.+.. +.+. ..+..+...|.+.|++++|...|+++.+.. +. +..+|.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 217 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQT 217 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHH
Confidence 999999999999999999998764 2222 233445788889999999999999988764 33 678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 015590 238 TLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKK 317 (404)
Q Consensus 238 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 317 (404)
.+...|.+.|++++|...|++..+.... +..+|..+...|...|++++|...|++..+.. +.+..++..+...|.+.|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 9999999999999999999998876433 67889999999999999999999999988763 224778888999999999
Q ss_pred ChhHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 015590 318 RFPEAKELVGRMICERMS-----------PSFVSYKKLIHGLCNQKLVEDVDWVLKK 363 (404)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 363 (404)
++++|.+.++++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999988764211 1356788888899999998888776654
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.1e-17 Score=148.16 Aligned_cols=267 Identities=8% Similarity=-0.073 Sum_probs=209.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHH
Q 015590 90 NEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLV 169 (404)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 169 (404)
+...+..+...+...|++++|..+++.+.... |.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence 34456778888999999999999999987654 3344444444444444999999999999988754 2456788889
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHH--------------HH-HHHhcCChHHHHHHHHHchhCCCCCcHH
Q 015590 170 LNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNIL--------------LK-GLCENGNLEAAFYVLDEFPKQNCEPNVR 234 (404)
Q Consensus 170 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 234 (404)
...+...|++++|.+.++.+.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+..
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 173 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQ 173 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHH
Confidence 999999999999999999998764 3333344333 22 3777889999999999988765 55788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 015590 235 TYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLL 314 (404)
Q Consensus 235 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 314 (404)
++..+...|...|++++|...++++.+.... +..+|..+...+...|++++|...|+++.+.. +.+...+..+...+.
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 8999999999999999999999998876432 57788899999999999999999999988763 235778889999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 015590 315 DKKRFPEAKELVGRMICERMSP-----------SFVSYKKLIHGLCNQKLVEDVDWVLKKM 364 (404)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (404)
..|++++|.+.++++.+..... +...|..+..++...|++++|..++++.
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999988753221 4678888899999999999999888754
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=5.7e-18 Score=151.39 Aligned_cols=285 Identities=12% Similarity=0.082 Sum_probs=134.1
Q ss_pred ccCCCCCCCCCccchhhcccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHH
Q 015590 33 LASPSASHQDSDHHAYKLNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIED 112 (404)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 112 (404)
+....++...+...++++++|+ +|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 12 ll~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4456777888888899998775 8999999999999999999999753 577799999999999999999999
Q ss_pred HHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc
Q 015590 113 IMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL 192 (404)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 192 (404)
+++...+.. ++..+...++..+.+ .|+++++.++++. |+..+|+.+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~~---~~~~i~~~Li~~Y~K-lg~l~e~e~f~~~-------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 83 YLQMARKKA---RESYVETELIFALAK-TNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTTC-------C----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHhC---ccchhHHHHHHHHHH-hCCHHHHHHHHcC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 888776532 233444556666666 9999999888852 77789999999999999999999999976
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 015590 193 GVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFN 272 (404)
Q Consensus 193 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 272 (404)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. . .+.-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~--~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V--HADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T--CHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h--CHhhHH
Confidence 48999999999999999999999988 278999999999999999999966655432 2 333455
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC------CHHHHHHHH
Q 015590 273 ILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE-RMSP------SFVSYKKLI 345 (404)
Q Consensus 273 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p------~~~~~~~li 345 (404)
.++..|.+.|++++|..+++...... +-....|+.|.-.|++- ++++..+.++..... +++| +...|.-+.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998775 45677888887777765 344444444433222 2222 345688888
Q ss_pred HHHHcCCChHHHHH
Q 015590 346 HGLCNQKLVEDVDW 359 (404)
Q Consensus 346 ~~~~~~g~~~~a~~ 359 (404)
-.|.+.++++.|..
T Consensus 290 ~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 290 FLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHhhchHHHHHH
Confidence 88888999988775
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=8.6e-16 Score=133.75 Aligned_cols=211 Identities=12% Similarity=0.093 Sum_probs=100.0
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhcCChHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGV-EIDACCLNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~ 219 (404)
.|+++.|+..++.. -+|+..++..+...+...++.++|++.++++...+. +-+...+..+...|...|++++|.+
T Consensus 47 ~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~ 122 (291)
T 3mkr_A 47 QRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122 (291)
T ss_dssp TTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555444331 123444455555555555555555555555554432 2233344444455555555555555
Q ss_pred HHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHcCCCHHHHHHHHHHHhh
Q 015590 220 VLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTF---NILISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
.+++ +.+...+..+...|.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|+++.+
T Consensus 123 ~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~ 194 (291)
T 3mkr_A 123 TLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194 (291)
T ss_dssp HHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 5544 2344455555555555555555555555554442 222111 1122222333555555555555554
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHH-HHHHHHHHH
Q 015590 297 KGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVED-VDWVLKKMV 365 (404)
Q Consensus 297 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~ 365 (404)
.. +.+...++.+..++.+.|++++|.+.++++.+.. +-+..++..++..+...|+.++ +.++++++.
T Consensus 195 ~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 195 KC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 42 2344455555555555555555555555554431 2244455555555555555543 344555544
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=7.8e-16 Score=134.00 Aligned_cols=273 Identities=9% Similarity=0.049 Sum_probs=208.2
Q ss_pred HHHHhcCCChhHHHHHHHHHhhCCCCCCCH--HHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHh
Q 015590 62 LKIFSNLRDPISVISVLNQYSKRKDYNPNE--ALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGN 139 (404)
Q Consensus 62 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (404)
|+-....|+++.|+..++.... ..|+. .....+..+|...|+++.|...++. . .+++......+..++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~---~~~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S---SAPELQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c---CChhHHHHHHHHHHHc
Confidence 4456678999999999987632 34443 4556778999999999999876644 1 2345555556666666
Q ss_pred hcCCHHHHHHHHhhcccCCCCc-cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 015590 140 MAGRISKAIETLFDMPSYNCWP-SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAF 218 (404)
Q Consensus 140 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 218 (404)
..|+.++|++.++++...+..| +...+..+...+...|++++|++.++. +.+...+..+...|.+.|++++|.
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 6899999999999988765445 455677777899999999999999987 567889999999999999999999
Q ss_pred HHHHHchhCCCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 015590 219 YVLDEFPKQNCEPNVRTY---STLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMK 295 (404)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 295 (404)
+.|+.+.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|...|++..
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998874 443211 223344455689999999999998874 3478899999999999999999999999988
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 015590 296 GKGCYPNSASYQEVLYGLLDKKRFPE-AKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVD 358 (404)
Q Consensus 296 ~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 358 (404)
+.. +-+..++..++..+...|+.++ +.++++++.+. .|+... +.+...+.+.++++.
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLV 285 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHH
Confidence 874 2367889999999999999976 67899998875 455433 223344444444443
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=2.3e-17 Score=147.49 Aligned_cols=282 Identities=10% Similarity=0.076 Sum_probs=131.3
Q ss_pred hcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHH
Q 015590 66 SNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRIS 145 (404)
Q Consensus 66 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 145 (404)
.+.|+.++|.++++++. ++.+|..++.++.+.|++++|++.|.+.. +...+..++..+.. .|+++
T Consensus 14 ~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika~-------D~~~y~~V~~~ae~-~g~~E 78 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-------DPSSYMEVVQAANT-SGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcCC-------CHHHHHHHHHHHHh-CCCHH
Confidence 35678999999999882 23599999999999999999999997641 23345555555555 99999
Q ss_pred HHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHch
Q 015590 146 KAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFP 225 (404)
Q Consensus 146 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 225 (404)
+|...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+.+.|...|++++|...|..+
T Consensus 79 eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 79 ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 999977777663 3667889999999999999999998885 477789999999999999999999999987
Q ss_pred hCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhh
Q 015590 226 KQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSAS 305 (404)
Q Consensus 226 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 305 (404)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~ 209 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADE 209 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhh
Confidence 37999999999999999999999998 278999999999999999999966555422 34444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC-CCCC------CHHhHHH
Q 015590 306 YQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ-GFVP------RMGMWRE 378 (404)
Q Consensus 306 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p------~~~~~~~ 378 (404)
...++..|.+.|++++|..+++...... +-....|+-+.-+|++-+ +++..+-++...++ ++.| +...|..
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 5678999999999999999999998654 556678888877777653 44444444433332 4444 3446777
Q ss_pred HHHhhccCCCCcchh
Q 015590 379 IVGCVTFGKDNRNRV 393 (404)
Q Consensus 379 ll~~~~~~~~~~~~~ 393 (404)
+.-.|...++++++.
T Consensus 288 ~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 288 LVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHhhchHHHHH
Confidence 777776667666554
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=3.7e-13 Score=126.32 Aligned_cols=313 Identities=11% Similarity=-0.020 Sum_probs=173.1
Q ss_pred CHHHHHHHHhc----CCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcccCCCChH
Q 015590 57 SPTEVLKIFSN----LRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQ----AKRFDAIEDIMQRIKVEKLCRFSDG 128 (404)
Q Consensus 57 ~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 128 (404)
++..+-..|.. .+++++|+..|++..+. .+...+..+...|.. .+++++|...|+.....+ ...
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~ 148 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDS 148 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHH
Confidence 44444445554 55555555555555432 144445555555555 455556666665554432 112
Q ss_pred HHHHHHHHHHh---hcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHh----cCcHhHHHHHHHHHHHcCCCCCHhHH
Q 015590 129 FFYNVIKIYGN---MAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVS----AKLYGEIQGIYTSAAKLGVEIDACCL 201 (404)
Q Consensus 129 ~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 201 (404)
...++-..+.. ..+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|+...+.| +...+
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 222 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQ 222 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHH
Confidence 22222222221 0345666666666555543 34455555555555 556666666666665543 34455
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 015590 202 NILLKGLCE----NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE----KGNVEEAFGLLERMESEGIDADTVTFNI 273 (404)
Q Consensus 202 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 273 (404)
..+...|.. .+++++|..+|+...+.| +..++..+...|.. .++.++|+..|++..+.| +...+..
T Consensus 223 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~ 296 (490)
T 2xm6_A 223 LHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYY 296 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHH
Confidence 555555554 556666666666655543 33445555555555 566666666666665543 3445555
Q ss_pred HHHHHHcC-----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015590 274 LISGLRKQ-----GKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKK---RFPEAKELVGRMICERMSPSFVSYKKLI 345 (404)
Q Consensus 274 li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~li 345 (404)
+...|... ++.++|...|++..+.| +...+..+...|...| +.++|.+.|++..+. .+...+..+.
T Consensus 297 Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg 370 (490)
T 2xm6_A 297 LAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLG 370 (490)
T ss_dssp HHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHH
Confidence 66666555 67777777777766654 3455555666665544 566777777777664 3456666666
Q ss_pred HHHHc----CCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhcc----CCCCcchhhHHHh
Q 015590 346 HGLCN----QKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTF----GKDNRNRVYVTET 398 (404)
Q Consensus 346 ~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~~~~~~~~ 398 (404)
..|.. .+++++|...|++..+.| +...+..|-..|.. .++.+.+...++.
T Consensus 371 ~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 371 NALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 66766 677777777777777654 34444444445544 4555555544443
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1e-13 Score=131.41 Aligned_cols=355 Identities=8% Similarity=-0.018 Sum_probs=238.0
Q ss_pred CCCCCccchhhcc---cCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHH-HhcCCchHHHH--
Q 015590 39 SHQDSDHHAYKLN---HKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKL-AQAKRFDAIED-- 112 (404)
Q Consensus 39 ~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~~~~~~a~~-- 112 (404)
....++.++.+.- +.+...|...+..+.+.|++++|..+|+++++. .|+...|...+... ...|+.+.|.+
T Consensus 27 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~~~~~~~~~~~~~a~~~~ 103 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYLSYVRETKGKLPSYKEKM 103 (530)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHHTTTSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHccchhhHHHHH
Confidence 3444444554432 224446778888888889999999999988754 36777776666433 34567766655
Q ss_pred --HHHHHHhcccCCCChHHHHHHHHHHHhh---------cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHH--------
Q 015590 113 --IMQRIKVEKLCRFSDGFFYNVIKIYGNM---------AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLL-------- 173 (404)
Q Consensus 113 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-------- 173 (404)
+|+.....-...+++..+|.....+... .|++++|..+|++..+....+....|.......
T Consensus 104 ~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~ 183 (530)
T 2ooe_A 104 AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLA 183 (530)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHH
Confidence 6665543321223344444444444332 577888888888877621111112332211100
Q ss_pred -----HhcCcHh------------------------------------------------------------HHHHHHHH
Q 015590 174 -----VSAKLYG------------------------------------------------------------EIQGIYTS 188 (404)
Q Consensus 174 -----~~~~~~~------------------------------------------------------------~a~~~~~~ 188 (404)
.+.+++. ++..+|++
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 0011112 34445555
Q ss_pred HHHcCCCCCHhHHHHHHHHHHh-------cCChH-------HHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 015590 189 AAKLGVEIDACCLNILLKGLCE-------NGNLE-------AAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFG 254 (404)
Q Consensus 189 ~~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 254 (404)
..... +.+...|..+...+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..
T Consensus 264 al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 264 CLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 55442 4456677777777775 68987 899999998863225578899999999999999999999
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCChhHHHHHHHHHHH
Q 015590 255 LLERMESEGIDAD--TVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYG-LLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 255 ~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~ 331 (404)
+|+++.+. .|+ ...|..++..+.+.|+.++|..+|++..+.. +.+...|...... +...|+.++|.++|+...+
T Consensus 343 ~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 343 IYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 99999986 444 2578889998999999999999999998863 1123333332222 3468999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCCC--HHhHHHHHHhhccCCCCcchhhHHHhhhh
Q 015590 332 ERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQG-FVPR--MGMWREIVGCVTFGKDNRNRVYVTETVDS 401 (404)
Q Consensus 332 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 401 (404)
.. +.+...|..++..+.+.|+.++|+.+|++....+ ..|+ ...|...+......|+.+.+..+.+...+
T Consensus 420 ~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 420 KY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 52 3467899999999999999999999999999863 3443 44787778777778888888877776543
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=2.4e-15 Score=125.12 Aligned_cols=199 Identities=12% Similarity=0.010 Sum_probs=134.5
Q ss_pred ccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHH
Q 015590 161 PSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLM 240 (404)
Q Consensus 161 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 240 (404)
++...+..+...+.+.|++++|...|+...+.. |.+...+..+...+.+.|++++|...|++..+.. +.+...|..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455666777777777777777777777777654 4566677777777777777777777777776654 45566777777
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 015590 241 HGLCEK-----------GNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEV 309 (404)
Q Consensus 241 ~~~~~~-----------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 309 (404)
..+.+. |++++|+..|++..+.... +...|..+...+...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 8888888888887766433 56677777778888888888888888877765 567777788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 310 LYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 310 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888888888888888888877652 3456677777788888888888888777654
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=5.1e-13 Score=125.36 Aligned_cols=317 Identities=8% Similarity=-0.040 Sum_probs=253.5
Q ss_pred cCCCCCHHHHHHHHhc----CCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcccC
Q 015590 52 HKDWLSPTEVLKIFSN----LRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQ----AKRFDAIEDIMQRIKVEKLC 123 (404)
Q Consensus 52 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~ 123 (404)
..+..++..+-..|.. .+++++|+..|++..+. -+...+..|...|.. .+++++|.++|+...+.+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 4456666777777777 89999999999999764 367788889999998 899999999999987654
Q ss_pred CCChHHHHHHHHHHHhh----cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHh----cCcHhHHHHHHHHHHHcCCC
Q 015590 124 RFSDGFFYNVIKIYGNM----AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVS----AKLYGEIQGIYTSAAKLGVE 195 (404)
Q Consensus 124 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~ 195 (404)
.....+ .+...+.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|+...+.|
T Consensus 110 --~~~a~~-~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-- 181 (490)
T 2xm6_A 110 --LPQAQQ-NLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-- 181 (490)
T ss_dssp --CHHHHH-HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred --CHHHHH-HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 233333 34444443 579999999999988865 56678888888887 789999999999999875
Q ss_pred CCHhHHHHHHHHHHh----cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCC
Q 015590 196 IDACCLNILLKGLCE----NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE----KGNVEEAFGLLERMESEGIDAD 267 (404)
Q Consensus 196 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~ 267 (404)
+...+..+...|.. .++.++|.++|+...+.| +..++..+...|.. .+++++|...|++..+.| +
T Consensus 182 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 254 (490)
T 2xm6_A 182 -NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N 254 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C
T ss_pred -CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 67788889999998 899999999999998865 56778888888886 889999999999998764 5
Q ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCH
Q 015590 268 TVTFNILISGLRK----QGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDK-----KRFPEAKELVGRMICERMSPSF 338 (404)
Q Consensus 268 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~ 338 (404)
...+..+...|.. .++.++|...|++..+.| +...+..+...|... ++.++|...+++..+.| +.
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~ 328 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA 328 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence 5677777777877 899999999999998875 566777888888887 89999999999998864 45
Q ss_pred HHHHHHHHHHHcCC---ChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhcc----CCCCcchhhHHHh
Q 015590 339 VSYKKLIHGLCNQK---LVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTF----GKDNRNRVYVTET 398 (404)
Q Consensus 339 ~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~~~~~~~~ 398 (404)
..+..+...|...| +.++|.+.|++..+.| +...+..|-..|.. .++.+.+...++.
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 67777888887766 7899999999999774 45566666666665 4566666555544
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.6e-15 Score=124.79 Aligned_cols=213 Identities=13% Similarity=0.054 Sum_probs=147.9
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCC--CCC----HhHHHHHHHHHHhcCCh
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGV--EID----ACCLNILLKGLCENGNL 214 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~~li~~~~~~g~~ 214 (404)
.|++++|...|++..+.. .+...|..+...+...|++++|...++...+... .++ ..++..+...|...|++
T Consensus 18 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL 95 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence 677777777777666654 5566677777777777777777777777665421 111 46677777777777777
Q ss_pred HHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015590 215 EAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERM 294 (404)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 294 (404)
++|...|+...+. .|+. ..+.+.|++++|...++++...... +...+..+...+...|++++|...|++.
T Consensus 96 ~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 96 KKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp HHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7777777777664 2332 3455667777888877777765322 4456677777777888888888888877
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 015590 295 KGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ 367 (404)
Q Consensus 295 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (404)
.+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...|..+..++...|++++|...+++..+.
T Consensus 166 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 166 IKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7653 2256777778888888888888888888877653 345677777888888888888888888877653
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=2.4e-14 Score=121.76 Aligned_cols=209 Identities=11% Similarity=-0.056 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHH
Q 015590 163 VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG 242 (404)
Q Consensus 163 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 242 (404)
...|..+...+...|++++|.+.++.+.+.. +.+..++..+...|...|++++|.+.|+++.+.. +.+...|..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777778888888888888888887764 4567778888888888888888888888877664 4567778888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 015590 243 LCEKGNVEEAFGLLERMESEGIDA-DTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPE 321 (404)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 321 (404)
|...|++++|...|+++.+.+..| +...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887633334 45567777788888888888888888877663 2246777888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHH
Q 015590 322 AKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWR 377 (404)
Q Consensus 322 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 377 (404)
|.+.++++.+.. +.+...+..+...+...|+.++|.++++++.+. .|+...+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 246 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 888888887642 456677777788888888888888888888754 34444433
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=3.7e-14 Score=118.16 Aligned_cols=213 Identities=7% Similarity=-0.080 Sum_probs=152.9
Q ss_pred cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHH
Q 015590 162 SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMH 241 (404)
Q Consensus 162 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 241 (404)
+...|..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|...++...+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34567777777778888888888888777664 4456677777788888888888888888776654 456677777788
Q ss_pred HHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 015590 242 GLCEK-GNVEEAFGLLERMESEGIDAD-TVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRF 319 (404)
Q Consensus 242 ~~~~~-~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 319 (404)
.|... |++++|...|+++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888776322333 4567777778888888888888888877653 22466777788888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHH
Q 015590 320 PEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREI 379 (404)
Q Consensus 320 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 379 (404)
++|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+. .|+......+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~ 221 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 888888888776532146666777777778888888888888887643 3554444433
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.7e-14 Score=122.90 Aligned_cols=157 Identities=13% Similarity=0.024 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
.+|..+...+...|++++|...++...+.. |+. ..+.+.|++++|...++.+.... +.+...|..+...+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHH
Confidence 455556666666666666666666665542 221 23445566666666666665543 33455566666666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 015590 244 CEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAK 323 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 323 (404)
...|++++|...|++..+.... +..+|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6667777777776666654322 45566666666667777777777776666553 224556666666777777777777
Q ss_pred HHHHHHHHC
Q 015590 324 ELVGRMICE 332 (404)
Q Consensus 324 ~~~~~~~~~ 332 (404)
+.+++..+.
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777666553
No 37
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=1.6e-13 Score=130.01 Aligned_cols=334 Identities=10% Similarity=0.031 Sum_probs=229.1
Q ss_pred CCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHH
Q 015590 53 KDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYN 132 (404)
Q Consensus 53 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 132 (404)
.|...|..++. +.+.|++++|..+|+++++. .|.+...|...+..+.+.|++++|..+|+++.... |+.. .|.
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~-lw~ 83 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHID-LWK 83 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHH-HHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChH-HHH
Confidence 35667888888 47789999999999999865 46678899999999999999999999999987653 3433 444
Q ss_pred HHH-HHHhhcCCHHHHHH----HHhhccc-CCCCc-cHHHHHHHHHHHHh---------cCcHhHHHHHHHHHHHcCCCC
Q 015590 133 VIK-IYGNMAGRISKAIE----TLFDMPS-YNCWP-SVKTFNLVLNLLVS---------AKLYGEIQGIYTSAAKLGVEI 196 (404)
Q Consensus 133 ~l~-~~~~~~g~~~~A~~----~~~~m~~-~~~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~ 196 (404)
... ......|+.++|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++..+.....
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh
Confidence 333 33333577766655 7776543 34333 45678877776654 688999999999988731111
Q ss_pred CHhHHHHHHHHH-------------HhcCChHH-----------------------------------------------
Q 015590 197 DACCLNILLKGL-------------CENGNLEA----------------------------------------------- 216 (404)
Q Consensus 197 ~~~~~~~li~~~-------------~~~g~~~~----------------------------------------------- 216 (404)
....|....... .+.++++.
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 122332211110 01122222
Q ss_pred -------------HHHHHHHchhCCCCCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHCCCCCCHH
Q 015590 217 -------------AFYVLDEFPKQNCEPNVRTYSTLMHGLCE-------KGNVE-------EAFGLLERMESEGIDADTV 269 (404)
Q Consensus 217 -------------a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~A~~~~~~m~~~~~~p~~~ 269 (404)
+..+|++..... +.+...|...+..+.+ .|+++ +|..+|++..+.-.+-+..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 333444433322 3455566666666665 68876 8899998887522223577
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCC-h-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015590 270 TFNILISGLRKQGKVEEGMKLLERMKGKGCYPN-S-ASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHG 347 (404)
Q Consensus 270 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 347 (404)
.|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+.. +.+...|......
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Confidence 8888889999999999999999999886 444 2 478888888888899999999999998752 2233333332222
Q ss_pred -HHcCCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHhhccCCCCcchhhHHHhh
Q 015590 348 -LCNQKLVEDVDWVLKKMVQQGFVP-RMGMWREIVGCVTFGKDNRNRVYVTETV 399 (404)
Q Consensus 348 -~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 399 (404)
+...|+.++|..+|+...+. .| +...|..++..+...|+.+.+..+++..
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 33689999999999988864 34 4678888888888888888888877764
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=9.5e-15 Score=121.49 Aligned_cols=112 Identities=15% Similarity=0.018 Sum_probs=40.9
Q ss_pred CcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 015590 177 KLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLL 256 (404)
Q Consensus 177 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 256 (404)
|++++|+..++...+.. |.+...+..+...|...|++++|...|++..+.. .+...+..+...|...|++++|+..|
T Consensus 98 g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444444432 2233344444444444444444444444444333 33334444444444444444444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015590 257 ERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLE 292 (404)
Q Consensus 257 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 292 (404)
++..+.... +...+..+...+...|++++|...|+
T Consensus 175 ~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 175 AKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHSTT-CHHHHHHHHHHHTC------------
T ss_pred HHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 444333211 23333344444444444444444443
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=1.1e-15 Score=131.72 Aligned_cols=222 Identities=9% Similarity=-0.075 Sum_probs=103.6
Q ss_pred cCCChhHHHHHHHHHhhCCCCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCH
Q 015590 67 NLRDPISVISVLNQYSKRKDYNP--NEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRI 144 (404)
Q Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 144 (404)
..|++++|+..|+.+.+.....+ +..++..+...+...|++++|...++.+.... |.+...+..+...+...|++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHccCH
Confidence 34677788888887765422111 34566667777777777777777777765443 22222222222222225555
Q ss_pred HHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHc
Q 015590 145 SKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEF 224 (404)
Q Consensus 145 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 224 (404)
++|.+.|++..+.. +.+...|..+...+.+.|++++|...++.+.+.. |+.......+..+...|++++|...++..
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555554432 1133445555555555555555555555555432 22222222333334445555555555443
Q ss_pred hhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 015590 225 PKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDA---DTVTFNILISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 225 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
.... +++...+. ++..+...++.++|...+++........ +...|..+...|.+.|++++|...|++..+
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3322 22222222 3333444444444444444443221100 023344444444444444444444444443
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=4.1e-14 Score=120.39 Aligned_cols=201 Identities=8% Similarity=-0.010 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHH
Q 015590 55 WLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVI 134 (404)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 134 (404)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.... +.....+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHH
Confidence 3455666667777777777777777776542 3456667777777777777777777777765443 11222233333
Q ss_pred HHHHhhcCCHHHHHHHHhhcccCCCCc-cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 015590 135 KIYGNMAGRISKAIETLFDMPSYNCWP-SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGN 213 (404)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 213 (404)
..+.. .|++++|.+.|+++...+..| +...+..+...+...|++++|.+.++.+.+.. +.+..++..+...|...|+
T Consensus 113 ~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 113 GFLYE-QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHH-TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC
Confidence 33333 677777777776665522223 34456666666666666666666666666553 3345566666666666666
Q ss_pred hHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 214 LEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
+++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 191 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 191 YVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666666665543 345555666666666666666666666666554
No 41
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=3e-13 Score=126.14 Aligned_cols=338 Identities=7% Similarity=-0.084 Sum_probs=229.3
Q ss_pred CCCHHHHHHHHhcCCChhHHHHHHHHHhhC-------CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhccc-----
Q 015590 55 WLSPTEVLKIFSNLRDPISVISVLNQYSKR-------KDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKL----- 122 (404)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----- 122 (404)
...||.+-..+...|++++|++.|++.++- ..-+....+|..+..+|...|++++|...++.+.....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345788889999999999999999987641 11233567899999999999999999999988654311
Q ss_pred CCCC-hHHHHHHHHHHHh-hcCCHHHHHHHHhhcccCCCCcc-HHHHHHHHHH---HHhcCcHhHHHHHHHHHHHcCCCC
Q 015590 123 CRFS-DGFFYNVIKIYGN-MAGRISKAIETLFDMPSYNCWPS-VKTFNLVLNL---LVSAKLYGEIQGIYTSAAKLGVEI 196 (404)
Q Consensus 123 ~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~~ 196 (404)
..+. ...+.+.-..+.. ..+++++|++.|++..+.. |+ +..+..+..+ +...++.++|++.+++..+.. +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 1111 2233333222322 1467999999999988754 54 4455444444 445677889999999988875 55
Q ss_pred CHhHHHHHHHHHHhc----CChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 015590 197 DACCLNILLKGLCEN----GNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFN 272 (404)
Q Consensus 197 ~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 272 (404)
+..++..+...+... |++++|.+.+++..... +.+..++..+...|...|++++|...|++..+.... +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 666776666665554 67889999999887765 667888999999999999999999999999876433 455666
Q ss_pred HHHHHHHcC-------------------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 015590 273 ILISGLRKQ-------------------GKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICER 333 (404)
Q Consensus 273 ~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 333 (404)
.+...|... +..+.|...+++..+.. +.+...+..+...+...|++++|++.|++..+..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 665555322 23567788888877653 2355788889999999999999999999998764
Q ss_pred CCCCHH--HHHHHHH-HHHcCCChHHHHHHHHHHHHCCC----------------------CC-CHHhHHHHHHhhccCC
Q 015590 334 MSPSFV--SYKKLIH-GLCNQKLVEDVDWVLKKMVQQGF----------------------VP-RMGMWREIVGCVTFGK 387 (404)
Q Consensus 334 ~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~----------------------~p-~~~~~~~ll~~~~~~~ 387 (404)
..+... .+..+.. .....|+.++|...|++..+..- .| +..+|..+=..+...|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g 444 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 332221 2233332 34578999999999988775321 12 2345555555666666
Q ss_pred CCcchhhHHHh
Q 015590 388 DNRNRVYVTET 398 (404)
Q Consensus 388 ~~~~~~~~~~~ 398 (404)
+.+.+...++.
T Consensus 445 ~~~~A~~~y~k 455 (472)
T 4g1t_A 445 KMQQADEDSER 455 (472)
T ss_dssp HCC--------
T ss_pred CHHHHHHHHHH
Confidence 66666655543
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=1e-13 Score=119.21 Aligned_cols=229 Identities=8% Similarity=0.017 Sum_probs=102.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcccCCCChH-HHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCcc--HHHHHHHHHH
Q 015590 96 LIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDG-FFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPS--VKTFNLVLNL 172 (404)
Q Consensus 96 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~ 172 (404)
.....+...|++++|...++.+.+.. |.+. .+..+...+.. .|++++|++.|++..+.+-.|+ ...|..+...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYE-LAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHH-TTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34444455555555555555544332 1121 22222222222 5555555555555444211111 1235555555
Q ss_pred HHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 015590 173 LVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEA 252 (404)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 252 (404)
+...|++++|...++...+.. +.+..++..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 555555666655555555543 3344555555555555555555555555555442 33444444444222233355555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHhhC-CCCCC------hhhHHHHHHHHHhcCChhHH
Q 015590 253 FGLLERMESEGIDADTVTFNILISGLRKQGK---VEEGMKLLERMKGK-GCYPN------SASYQEVLYGLLDKKRFPEA 322 (404)
Q Consensus 253 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~-~~~p~------~~~~~~li~~~~~~g~~~~a 322 (404)
...|++..+.... +...+..+...+...|+ .++|...+++..+. .-.|+ ...|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5555555443211 23344444444444444 44444444444332 01111 12333444444444444444
Q ss_pred HHHHHHHHH
Q 015590 323 KELVGRMIC 331 (404)
Q Consensus 323 ~~~~~~~~~ 331 (404)
.+.++++.+
T Consensus 241 ~~~~~~al~ 249 (272)
T 3u4t_A 241 DAAWKNILA 249 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=8e-13 Score=113.90 Aligned_cols=210 Identities=12% Similarity=-0.018 Sum_probs=143.9
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHh----cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cC
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVS----AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCE----NG 212 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g 212 (404)
.|++++|.+.|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+
T Consensus 19 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~ 92 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQ 92 (273)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCccc
Confidence 566666666666665522 34556666666666 777777777777776664 55666667777777 77
Q ss_pred ChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCCH
Q 015590 213 NLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE----KGNVEEAFGLLERMESEGIDADTVTFNILISGLRK----QGKV 284 (404)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~ 284 (404)
++++|...|+...+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++
T Consensus 93 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~ 166 (273)
T 1ouv_A 93 NTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDL 166 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCH
Confidence 7777777777776654 55666777777777 777777777777777654 45566666666666 7777
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHH
Q 015590 285 EEGMKLLERMKGKGCYPNSASYQEVLYGLLD----KKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCN----QKLVED 356 (404)
Q Consensus 285 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 356 (404)
++|...|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++
T Consensus 167 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~ 240 (273)
T 1ouv_A 167 KKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQ 240 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTT
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 77777777777664 45666667777777 777777777777777653 25566666777777 777788
Q ss_pred HHHHHHHHHHCC
Q 015590 357 VDWVLKKMVQQG 368 (404)
Q Consensus 357 a~~~~~~m~~~~ 368 (404)
|.+.|++..+.|
T Consensus 241 A~~~~~~a~~~~ 252 (273)
T 1ouv_A 241 AIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 888887777554
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=1.8e-14 Score=121.74 Aligned_cols=204 Identities=13% Similarity=0.050 Sum_probs=121.6
Q ss_pred ccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHH
Q 015590 51 NHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFF 130 (404)
Q Consensus 51 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (404)
++.....|..+...+...|++++|+..|+++++.. +.+...+..+...+...|++++|...++.+.... +.+...
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ 93 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD---SSAATA 93 (243)
T ss_dssp -----------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CcchHH
Confidence 44556677778888888899999999999887542 5567788888888888888888888888876553 233333
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 015590 131 YNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCE 210 (404)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 210 (404)
+..+...+...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...|.+
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 3333333333777777777777766543 2345566667777777777777777777776654 4456666667777777
Q ss_pred cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 211 NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
.|++++|...|+...+.. +.+..+|..+...|.+.|++++|...|+++.+.
T Consensus 172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777777777666553 445566666677777777777777777766654
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.3e-12 Score=112.67 Aligned_cols=224 Identities=11% Similarity=-0.033 Sum_probs=181.6
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhh----cCCHHHHHHHHhhcccCCCCccHHH
Q 015590 90 NEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNM----AGRISKAIETLFDMPSYNCWPSVKT 165 (404)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~ 165 (404)
+..++..+...+...|++++|...|+...+.+ +...+..+...+.. .+++++|...|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 56677778888888888888888888876532 33344444455555 788999999998887765 6678
Q ss_pred HHHHHHHHHh----cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHchhCCCCCcHHHHH
Q 015590 166 FNLVLNLLVS----AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCE----NGNLEAAFYVLDEFPKQNCEPNVRTYS 237 (404)
Q Consensus 166 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (404)
+..+...+.. .+++++|+..|+...+.+ +...+..+...|.. .+++++|...|+...+.+ +..++.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8888888888 899999999999988875 67788888889998 899999999999988865 566777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 015590 238 TLMHGLCE----KGNVEEAFGLLERMESEGIDADTVTFNILISGLRK----QGKVEEGMKLLERMKGKGCYPNSASYQEV 309 (404)
Q Consensus 238 ~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 309 (404)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 88888888 899999999999988764 56778888888888 899999999999988875 36677888
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCC
Q 015590 310 LYGLLD----KKRFPEAKELVGRMICER 333 (404)
Q Consensus 310 i~~~~~----~g~~~~a~~~~~~~~~~~ 333 (404)
...|.+ .+++++|.+.+++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888 899999999999988764
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=3.1e-14 Score=120.24 Aligned_cols=200 Identities=15% Similarity=0.045 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHH
Q 015590 163 VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG 242 (404)
Q Consensus 163 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 242 (404)
...|..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|++..+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3455666666677777777777777776653 4456666777777777777777777777766554 4456667777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 015590 243 LCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEA 322 (404)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 322 (404)
|...|++++|...|+++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777665322 55666777777777777777777777776652 22556677777777777777888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 015590 323 KELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ 367 (404)
Q Consensus 323 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (404)
.+.++++.+.. +.+...+..+..+|...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777776652 345667777777777788888888888777753
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=2e-13 Score=113.69 Aligned_cols=188 Identities=10% Similarity=-0.035 Sum_probs=113.4
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-CChHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCEN-GNLEAAFY 219 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~a~~ 219 (404)
.|++++|.+.|++..+.. +.+...|..+...+...|++++|.+.++.+.+.. +.+..++..+...|... |++++|..
T Consensus 21 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~ 98 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMA 98 (225)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHH
Confidence 566666666665555432 1234456666666666666666666666666553 34555666666666666 66666666
Q ss_pred HHHHchhCCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 015590 220 VLDEFPKQNC-EPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKG 298 (404)
Q Consensus 220 ~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 298 (404)
.++.+.+.+. +.+...|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...+++..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 99 YFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666655211 222455666666666777777777777666654322 45566666666667777777777776666543
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 299 CYPNSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 299 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
...+...+..+...+...|+.++|..+++.+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 178 EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 213455566666666667777777777766654
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=5.7e-14 Score=120.86 Aligned_cols=244 Identities=11% Similarity=-0.010 Sum_probs=191.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC--HhHHHHHHHH
Q 015590 130 FYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEID--ACCLNILLKG 207 (404)
Q Consensus 130 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~ 207 (404)
.......+.. .|++++|+..|++..+.. +.+...+..+...+...|++++|+..++...+.+..++ ...|..+...
T Consensus 6 ~~~~a~~~~~-~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFK-NNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHT-TTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3344445555 899999999999998765 23445888999999999999999999999998432222 2348899999
Q ss_pred HHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 015590 208 LCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEG 287 (404)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 287 (404)
|...|++++|...|+...+.. +.+..+|..+...|...|++++|...|++..+.... +...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998865 557789999999999999999999999998876332 566777777344445699999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHcCCChHHH
Q 015590 288 MKLLERMKGKGCYPNSASYQEVLYGLLDKKR---FPEAKELVGRMICER-MSPS------FVSYKKLIHGLCNQKLVEDV 357 (404)
Q Consensus 288 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~li~~~~~~g~~~~a 357 (404)
...|++..+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ...|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998873 2246777778888888888 888999999887641 1233 25778888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHH
Q 015590 358 DWVLKKMVQQGFVPRMGMWREIV 380 (404)
Q Consensus 358 ~~~~~~m~~~~~~p~~~~~~~ll 380 (404)
...+++..+ +.|+.......+
T Consensus 241 ~~~~~~al~--~~p~~~~a~~~l 261 (272)
T 3u4t_A 241 DAAWKNILA--LDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHh--cCccHHHHHHHh
Confidence 999999995 446654444333
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=9e-14 Score=119.72 Aligned_cols=219 Identities=11% Similarity=-0.040 Sum_probs=105.4
Q ss_pred cCCHHHHHHHHhhcccCCC--C-ccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 015590 141 AGRISKAIETLFDMPSYNC--W-PSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAA 217 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~--~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a 217 (404)
.|++++|+..|+++.+... . .+..+|..+...+...|++++|...|+.+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3455555555555544311 0 123345555555555555555555555555543 33455555555555555555555
Q ss_pred HHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 218 FYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
...|+...+.. +.+..+|..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 55555555443 334455555555555555555555555555543 222222223333334445555555555544443
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 298 GCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMS--P-SFVSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 298 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
. .++... ..++..+...++.++|.+.+....+.... | +...+..+...|...|++++|...|++..
T Consensus 174 ~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 174 S-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp S-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 112222 22444444455555555555554432100 0 13445555555555555555555555555
No 50
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=1.4e-13 Score=128.32 Aligned_cols=315 Identities=11% Similarity=-0.036 Sum_probs=208.0
Q ss_pred CCCHHHHHHHHhcCCChhHHHHHHHHHhhC-----CCC-CCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHhcccCCCC
Q 015590 55 WLSPTEVLKIFSNLRDPISVISVLNQYSKR-----KDY-NPNEALYTLIINKLAQA--KRFDAIEDIMQRIKVEKLCRFS 126 (404)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-~p~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~ 126 (404)
.++|+.+-..|...|++++|...|++..+- ... .....++.....++... +++++|...|++..... |.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~---p~ 170 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK---PK 170 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---TT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC---CC
Confidence 456888889999999999999999887642 111 22356676666666554 46999999999987665 34
Q ss_pred hHHHH-HHHHHH--HhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHh----cCcHhHHHHHHHHHHHcCCCCCHh
Q 015590 127 DGFFY-NVIKIY--GNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVS----AKLYGEIQGIYTSAAKLGVEIDAC 199 (404)
Q Consensus 127 ~~~~~-~~l~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~ 199 (404)
+..++ .+...+ ....++.++|++.|++..+.+ +.+...+..+...+.. .+++++|.+.+++..... +.+..
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~ 248 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTD 248 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHH
Confidence 43333 332222 223678888999998877654 2345566666555544 467889999999988875 66788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHH
Q 015590 200 CLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK-------------------GNVEEAFGLLERME 260 (404)
Q Consensus 200 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------------------~~~~~A~~~~~~m~ 260 (404)
++..+...|...|++++|...+++..+.. +.+..++..+...|... +..++|...|++..
T Consensus 249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 89999999999999999999999988765 55667777776665432 23567888888877
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChh--hHHHHHH-HHHhcCChhHHHHHHHHHHHCC----
Q 015590 261 SEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSA--SYQEVLY-GLLDKKRFPEAKELVGRMICER---- 333 (404)
Q Consensus 261 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~---- 333 (404)
+.... +..++..+...|...|++++|...|++..+....+... .+..+.. .....|+.++|+..+.+..+..
T Consensus 328 ~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 328 EANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp HHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred hcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 65433 55678889999999999999999999998874333221 2222222 2356789999999998876532
Q ss_pred -------------------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC-CCCCCHHhH
Q 015590 334 -------------------MSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ-GFVPRMGMW 376 (404)
Q Consensus 334 -------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~ 376 (404)
-+.+..+|..+..+|...|++++|.+.|++.++. ...|+..+|
T Consensus 407 ~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 407 EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 1235568888999999999999999999999876 345555444
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=2.9e-13 Score=121.85 Aligned_cols=230 Identities=9% Similarity=0.011 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCC-HHHHHHHHhhcccCCCCccHHHHHHH
Q 015590 91 EALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGR-ISKAIETLFDMPSYNCWPSVKTFNLV 169 (404)
Q Consensus 91 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l 169 (404)
...|..+...+.+.|++++|...++.+.... |.+...+..+...+...|+ +++|+..|++....+ +-+...|..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 4566777777778888888888888876654 4444444444444444675 888888888777654 2245677777
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH-cCC
Q 015590 170 LNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE-KGN 248 (404)
Q Consensus 170 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~ 248 (404)
..++...|++++|+..|+.+++.. +-+...|..+..++.+.|++++|+..|+++.+.. +.+...|+.+..++.+ .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 777888888888888888887765 5567777777788888888888888888777765 5567777777777777 555
Q ss_pred HHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----
Q 015590 249 VEEA-----FGLLERMESEGIDADTVTFNILISGLRKQG--KVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKK---- 317 (404)
Q Consensus 249 ~~~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---- 317 (404)
.++| +..|++....... +...|+.+...+...| +.++|.+.+.++ +.. ..+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccc
Confidence 4666 4666666655333 4566777777777666 467777777776 321 234556666666666653
Q ss_pred -----ChhHHHHHHHHH
Q 015590 318 -----RFPEAKELVGRM 329 (404)
Q Consensus 318 -----~~~~a~~~~~~~ 329 (404)
..++|+++++++
T Consensus 328 ~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 328 DNKEDILNKALELCEIL 344 (382)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 246777777776
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=1.7e-13 Score=123.33 Aligned_cols=247 Identities=11% Similarity=0.009 Sum_probs=200.9
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHcCCCCCHhHHHHHH
Q 015590 127 DGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKL-YGEIQGIYTSAAKLGVEIDACCLNILL 205 (404)
Q Consensus 127 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li 205 (404)
....+..+...+...|++++|++.|++..... +-+...|+.+..++...|+ +++|+..|+++.+.. +-+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 33445555555555899999999999998855 2346789999999999996 999999999999986 66888999999
Q ss_pred HHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCCH
Q 015590 206 KGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRK-QGKV 284 (404)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~ 284 (404)
.++...|++++|...|+++.+.. +.+..+|..+..++.+.|++++|+..|+++.+.... +...|+.+...+.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999876 678899999999999999999999999999987655 78899999999998 6665
Q ss_pred HHH-----HHHHHHHhhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-----
Q 015590 285 EEG-----MKLLERMKGKGCYPNSASYQEVLYGLLDKK--RFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQK----- 352 (404)
Q Consensus 285 ~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----- 352 (404)
++| +..|++..... +-+...|..+...+...| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 777 58888888763 225678888888888888 689999999988 33 3456778888999998874
Q ss_pred ----ChHHHHHHHHHH-HHCCCCCCHH-hHHHHHHh
Q 015590 353 ----LVEDVDWVLKKM-VQQGFVPRMG-MWREIVGC 382 (404)
Q Consensus 353 ----~~~~a~~~~~~m-~~~~~~p~~~-~~~~ll~~ 382 (404)
..++|.++++++ . .+.|... .|..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~--~~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 329 NKEDILNKALELCEILAK--EKDTIRKEYWRYIGRS 362 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH--HhCchhHHHHHHHHHH
Confidence 258999999998 5 4566554 44444443
No 53
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.57 E-value=6.8e-12 Score=125.29 Aligned_cols=278 Identities=14% Similarity=0.161 Sum_probs=206.5
Q ss_pred CCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHH
Q 015590 55 WLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVI 134 (404)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 134 (404)
......+-..+...|.+++|..+|++.. -.....+.++. ..+++++|.++.+++. .+.+++.+-
T Consensus 1049 ~~d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aervn-------~p~vWsqLA 1112 (1630)
T 1xi4_A 1049 NYDAPDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLA 1112 (1630)
T ss_pred hccHHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhcC-------CHHHHHHHH
Confidence 3345556677888889999999998862 12222333332 7778888888888652 244455555
Q ss_pred HHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 015590 135 KIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNL 214 (404)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 214 (404)
.++.. .|++++|.+.|.+. -|...|..++..+.+.|++++|.+.+...++.. +++...+.++.+|++.+++
T Consensus 1113 KAql~-~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1113 KAQLQ-KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHh-CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCH
Confidence 55555 89999999999764 356788889999999999999999998877764 4444455689999999888
Q ss_pred HHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015590 215 EAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERM 294 (404)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 294 (404)
++..... + .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.
T Consensus 1184 eele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1184 AELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 8644442 2 456677778999999999999999999884 37899999999999999999999877
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-
Q 015590 295 KGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRM- 373 (404)
Q Consensus 295 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~- 373 (404)
. +..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|..+++... |+.|..
T Consensus 1248 ~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL--~LeraH~ 1314 (1630)
T 1xi4_A 1248 N------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHM 1314 (1630)
T ss_pred C------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccChhHh
Confidence 3 5688888888888888888888876643 3456667788899999999999999998777 444433
Q ss_pred HhHHHHHHhhccC
Q 015590 374 GMWREIVGCVTFG 386 (404)
Q Consensus 374 ~~~~~ll~~~~~~ 386 (404)
..|+.|-..+.+.
T Consensus 1315 gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1315 GMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHHHhC
Confidence 3455554455443
No 54
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.55 E-value=1.6e-11 Score=122.78 Aligned_cols=289 Identities=12% Similarity=0.131 Sum_probs=165.9
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhCCC-CCCCHHHHHHHHHH---------------------------HHhcCCchHH
Q 015590 59 TEVLKIFSNLRDPISVISVLNQYSKRKD-YNPNEALYTLIINK---------------------------LAQAKRFDAI 110 (404)
Q Consensus 59 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~---------------------------~~~~~~~~~a 110 (404)
....++|...|.+.+|++++++...... +.-+...-+.++.+ +...|.+++|
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEA 1068 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHH
Confidence 4566788899999999999999974322 11223333334433 3344455555
Q ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 015590 111 EDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAA 190 (404)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 190 (404)
..+|++... ....+..+....+++++|.++.++.. +..+|..+..++.+.|++++|++.|...
T Consensus 1069 f~IYkKa~~----------~~~A~~VLie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1069 FAIFRKFDV----------NTSAVQVLIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHcCC----------HHHHHHHHHHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 555554310 11112222222455555555555432 2445666666666666666666666432
Q ss_pred HcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 015590 191 KLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVT 270 (404)
Q Consensus 191 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 270 (404)
-|...|..++.+|.+.|++++|.+.+....+.. ++....+.++.+|++.+++++..... . .++...
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 345555666666666666666666666555442 22222334666666666665432221 1 234455
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015590 271 FNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCN 350 (404)
Q Consensus 271 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 350 (404)
|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+-.+|..
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 555666666666666666666653 25666666666666666666666655 234666666666666
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHh
Q 015590 351 QKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTET 398 (404)
Q Consensus 351 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 398 (404)
.|+++.|....-. +..++..+..++..|...|.++++..++|.
T Consensus 1263 ~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred hhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666654432 334555666788888888888777777654
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=2.7e-13 Score=124.03 Aligned_cols=227 Identities=15% Similarity=-0.014 Sum_probs=136.8
Q ss_pred cCCHHHHHHHHhhcccC----CC-CccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc----C-CCCCHhHHHHHHHHHHh
Q 015590 141 AGRISKAIETLFDMPSY----NC-WPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL----G-VEIDACCLNILLKGLCE 210 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~~~~ 210 (404)
.|++++|...|++..+. +- +.....+..+...+...|++++|...+++..+. + .+....++..+...|..
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 55555555555544321 10 112345555666666666666666666655443 1 11223455666666666
Q ss_pred cCC-----------------hHHHHHHHHHchhC----CC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC
Q 015590 211 NGN-----------------LEAAFYVLDEFPKQ----NC-EPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGID-AD 267 (404)
Q Consensus 211 ~g~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~ 267 (404)
.|+ +++|...+++..+. +- +....++..+...|...|++++|...|++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 66666666654321 10 112346667777777788888887777776543110 01
Q ss_pred ----HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC--CC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CC
Q 015590 268 ----TVTFNILISGLRKQGKVEEGMKLLERMKGKG--CY---PNSASYQEVLYGLLDKKRFPEAKELVGRMICE----RM 334 (404)
Q Consensus 268 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~ 334 (404)
..++..+...|...|++++|...+++..+.. .. ....++..+...+...|++++|.+.+++..+. +.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 2366777777888888888888887765531 00 11456677777888888888888888877653 11
Q ss_pred C-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 015590 335 S-PSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ 367 (404)
Q Consensus 335 ~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (404)
. ....++..+...|...|++++|...+++..+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1 11346677778888888888888888887753
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=9.3e-14 Score=126.68 Aligned_cols=298 Identities=10% Similarity=-0.037 Sum_probs=200.3
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhccc---CCCChHHHH
Q 015590 57 SPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPN--EALYTLIINKLAQAKRFDAIEDIMQRIKVEKL---CRFSDGFFY 131 (404)
Q Consensus 57 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ 131 (404)
.+...-..+...|++++|+..|+++++..+-.|. ...+..+...+...|++++|...++.+..... ..+.....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3455567888899999999999999875321111 35688888899999999999999988643310 111223333
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhcccCC----CCc-cHHHHHHHHHHHHhcCc--------------------HhHHHHHH
Q 015590 132 NVIKIYGNMAGRISKAIETLFDMPSYN----CWP-SVKTFNLVLNLLVSAKL--------------------YGEIQGIY 186 (404)
Q Consensus 132 ~~l~~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~~~~~~ll~~~~~~~~--------------------~~~a~~~~ 186 (404)
..+...+...|++++|...|++..+.. -.+ ...++..+...+...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 344444444899999999888775521 001 13477788888888999 88888888
Q ss_pred HHHHHc----CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC----CCC-CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 015590 187 TSAAKL----GV-EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ----NCE-PNVRTYSTLMHGLCEKGNVEEAFGLL 256 (404)
Q Consensus 187 ~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~A~~~~ 256 (404)
+...+. +. +....++..+...|...|++++|...+++..+. +.. ....++..+...|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 876543 11 112446778888888899999999888877542 100 11236778888888999999999888
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHH
Q 015590 257 ERMESE----GIDA-DTVTFNILISGLRKQGKVEEGMKLLERMKGK----GCYP-NSASYQEVLYGLLDKKRFPEAKELV 326 (404)
Q Consensus 257 ~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 326 (404)
++.... +..+ ...++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 877542 1111 1456777888888889999998888877653 1111 1456777788888888998888888
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHHcCCCh
Q 015590 327 GRMICE----RMSP-SFVSYKKLIHGLCNQKLV 354 (404)
Q Consensus 327 ~~~~~~----~~~p-~~~~~~~li~~~~~~g~~ 354 (404)
++..+. +..+ ...++..+...+...|+.
T Consensus 331 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 876643 1111 234555666666666654
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=8.1e-12 Score=109.65 Aligned_cols=183 Identities=13% Similarity=0.024 Sum_probs=95.7
Q ss_pred HHHHHHHhhccc-CCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC-Hh-HHHHHHHHHHhcCChHHHHHHH
Q 015590 145 SKAIETLFDMPS-YNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEID-AC-CLNILLKGLCENGNLEAAFYVL 221 (404)
Q Consensus 145 ~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~li~~~~~~g~~~~a~~~~ 221 (404)
++|..+|++... .. +-+...|..++..+.+.|++++|.++|+++.+. .|+ .. +|..+...+.+.|++++|..+|
T Consensus 81 ~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 555555555544 22 112335555555555555555666555555543 222 22 5555555555566666666666
Q ss_pred HHchhCCCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC-C
Q 015590 222 DEFPKQNCEPNVRTYSTLMHGLC-EKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKG-C 299 (404)
Q Consensus 222 ~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~ 299 (404)
++..+.+ +.+...|........ ..|+.++|..+|++..+.... +...|..++..+.+.|+.++|..+|++..... .
T Consensus 158 ~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 6555543 233333333222211 246666666666665544222 44555666666666666666666666666542 2
Q ss_pred CC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 300 YP--NSASYQEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 300 ~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
.| ....|..++....+.|+.++|..+++++.+.
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 2345555566666666666666666666543
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=3.8e-13 Score=123.07 Aligned_cols=273 Identities=11% Similarity=-0.004 Sum_probs=203.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhccc---CCCChHHH
Q 015590 58 PTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNE----ALYTLIINKLAQAKRFDAIEDIMQRIKVEKL---CRFSDGFF 130 (404)
Q Consensus 58 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~ 130 (404)
+..+-..+...|++++|+..|+++++.. +.+. ..+..+...+...|++++|...+++...... ..+.....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445567889999999999999998753 2233 5788899999999999999999998754310 11222334
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcccC----CCCc-cHHHHHHHHHHHHhcCc-----------------HhHHHHHHHH
Q 015590 131 YNVIKIYGNMAGRISKAIETLFDMPSY----NCWP-SVKTFNLVLNLLVSAKL-----------------YGEIQGIYTS 188 (404)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~ 188 (404)
+..+...+...|++++|...|++..+. +-.| ...++..+...+...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 444444444599999999999987652 1112 23578888999999999 9999999988
Q ss_pred HHHc----CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCC---C--CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015590 189 AAKL----GV-EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNC---E--PNVRTYSTLMHGLCEKGNVEEAFGLLER 258 (404)
Q Consensus 189 ~~~~----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~li~~~~~~~~~~~A~~~~~~ 258 (404)
..+. +- +....++..+...|...|++++|...+++..+... . ....++..+...|...|++++|...|++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7643 21 12345788899999999999999999998765310 1 1123788899999999999999999998
Q ss_pred HHHCCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CC-CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 015590 259 MESEGID-----ADTVTFNILISGLRKQGKVEEGMKLLERMKGK----GC-YPNSASYQEVLYGLLDKKRFPEAKELVGR 328 (404)
Q Consensus 259 m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (404)
....... ....++..+...|...|++++|...+++.... +. .....++..+...|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7653111 12467888899999999999999999988754 11 11135778888999999999999999999
Q ss_pred HHHC
Q 015590 329 MICE 332 (404)
Q Consensus 329 ~~~~ 332 (404)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=1.9e-11 Score=107.34 Aligned_cols=184 Identities=10% Similarity=-0.010 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 015590 180 GEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVR-TYSTLMHGLCEKGNVEEAFGLLER 258 (404)
Q Consensus 180 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~ 258 (404)
++|..+|++..+.-.+.+...|..++..+.+.|++++|..+|++..+.. +.+.. .|..+...+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6667777666652113344566666666666777777777777666542 11222 566666666666777777777766
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC
Q 015590 259 MESEGIDADTVTFNILISGLR-KQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICER-MSP 336 (404)
Q Consensus 259 m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p 336 (404)
..+... ++...|........ ..|+.++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..... +.|
T Consensus 160 a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 665432 23333433322221 2566777777776666542 1145566666666666677777777777666642 233
Q ss_pred --CHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 337 --SFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 337 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
....|..++....+.|+.++|..+++++.+
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666666666777777777666664
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=5.1e-12 Score=101.86 Aligned_cols=165 Identities=13% Similarity=0.031 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHH
Q 015590 163 VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG 242 (404)
Q Consensus 163 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 242 (404)
+..|..+...+.+.|++++|++.|++..+.. |-+..++..+..+|.+.|++++|...+....... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 3444555555555555555555555554443 3344444445555555555555555554444332 2333444444444
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 015590 243 LCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEA 322 (404)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 322 (404)
+...++++.|...+.+....... +...+..+...|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 44445555555544444433221 33344444444444444444444444444332 11233444444444444444444
Q ss_pred HHHHHHHHH
Q 015590 323 KELVGRMIC 331 (404)
Q Consensus 323 ~~~~~~~~~ 331 (404)
++.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=3.1e-12 Score=103.11 Aligned_cols=175 Identities=13% Similarity=0.080 Sum_probs=151.7
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015590 196 IDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILI 275 (404)
Q Consensus 196 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 275 (404)
.+..+|..+...|.+.|++++|...|++..+.. |.+..+|..+...|.+.|++++|...+......... +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 367789999999999999999999999998876 668889999999999999999999999999877544 667788888
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 015590 276 SGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVE 355 (404)
Q Consensus 276 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 355 (404)
..+...++++.+...+.+..... +-+...+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 88999999999999999988764 2367788999999999999999999999998863 457788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHhH
Q 015590 356 DVDWVLKKMVQQGFVPRMGMW 376 (404)
Q Consensus 356 ~a~~~~~~m~~~~~~p~~~~~ 376 (404)
+|.+.|++.++ +.|+...|
T Consensus 159 ~A~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 159 EAVKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHHHh--CCccCHHH
Confidence 99999999985 45654433
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=7.8e-13 Score=120.52 Aligned_cols=298 Identities=12% Similarity=-0.050 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCCh----HHHHHHHHHHHhhcCCHHHHHHHHhhcccC----CC
Q 015590 88 NPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSD----GFFYNVIKIYGNMAGRISKAIETLFDMPSY----NC 159 (404)
Q Consensus 88 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~ 159 (404)
.+....+......+...|++++|...++.+.... +.+ ...+..+...+...|++++|...|++.... +-
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence 4566677888889999999999999999987764 222 123333443444499999999999886442 21
Q ss_pred Ccc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCC-----CCCHhHHHHHHHHHHhcCC--------------------
Q 015590 160 WPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGV-----EIDACCLNILLKGLCENGN-------------------- 213 (404)
Q Consensus 160 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~g~-------------------- 213 (404)
.|. ..++..+...+...|++++|...+++..+... .....++..+...|...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 222 45788888999999999999999998875421 1114478889999999999
Q ss_pred hHHHHHHHHHchhC----CC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCC
Q 015590 214 LEAAFYVLDEFPKQ----NC-EPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGI-DAD----TVTFNILISGLRKQGK 283 (404)
Q Consensus 214 ~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~ 283 (404)
+++|...+++..+. +. +....++..+...|...|++++|...|++..+... .++ ..++..+...|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999998876532 11 12245788889999999999999999998764311 112 2378888999999999
Q ss_pred HHHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCC
Q 015590 284 VEEGMKLLERMKGK----GCYP-NSASYQEVLYGLLDKKRFPEAKELVGRMICERM-SPS----FVSYKKLIHGLCNQKL 353 (404)
Q Consensus 284 ~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~ 353 (404)
+++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+... .++ ..++..+...|...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999987654 1111 145778889999999999999999998875311 112 4577888899999999
Q ss_pred hHHHHHHHHHHHHC----CCCCC-HHhHHHHHHhhccCCC
Q 015590 354 VEDVDWVLKKMVQQ----GFVPR-MGMWREIVGCVTFGKD 388 (404)
Q Consensus 354 ~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~ 388 (404)
+++|...+++..+. +..+. ..++..+-..+...|+
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 99999999987753 22222 2345555555554443
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=8.2e-13 Score=116.82 Aligned_cols=274 Identities=9% Similarity=-0.029 Sum_probs=136.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhCCCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhccc---CCCChHHHHH
Q 015590 60 EVLKIFSNLRDPISVISVLNQYSKRKDYNPN----EALYTLIINKLAQAKRFDAIEDIMQRIKVEKL---CRFSDGFFYN 132 (404)
Q Consensus 60 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~ 132 (404)
..-..+...|++++|+..|+++++.. +.+ ...+..+...+...|++++|.+.++....... ..+.....+.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34456777788888888888887653 223 35677777888888888888888877543210 0111122233
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcccC----CCCc-cHHHHHHHHHHHHhcCc--------------------HhHHHHHHH
Q 015590 133 VIKIYGNMAGRISKAIETLFDMPSY----NCWP-SVKTFNLVLNLLVSAKL--------------------YGEIQGIYT 187 (404)
Q Consensus 133 ~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~ 187 (404)
.+...+...|++++|...|++..+. +-.+ ...++..+...+...|+ +++|.+.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 3333333367777777777665431 1000 12255556666666666 666666555
Q ss_pred HHHHc----CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 188 SAAKL----GV-EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 188 ~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
+..+. +. +....++..+...|...|++++|...+++..+.. ...
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------------------------~~~ 216 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-------------------------------KEF 216 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------------------------HHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-------------------------------Hhc
Confidence 54321 10 0112234444444555555555555554433210 000
Q ss_pred CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----
Q 015590 263 GI-DADTVTFNILISGLRKQGKVEEGMKLLERMKGK----GCYP-NSASYQEVLYGLLDKKRFPEAKELVGRMICE---- 332 (404)
Q Consensus 263 ~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---- 332 (404)
+. .....++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 00 001123444444445555555555555444322 0000 0234455555555566666666655555432
Q ss_pred CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 333 RMSP-SFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 333 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
+..+ ...++..+...|...|++++|...+++..+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1000 123455556666666666666666666554
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=1.5e-12 Score=115.12 Aligned_cols=238 Identities=15% Similarity=-0.005 Sum_probs=147.4
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHc----CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC----CC-CCcHH
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKL----GV-EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ----NC-EPNVR 234 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 234 (404)
.+..+...+...|++++|.+.++...+. +. +....++..+...|...|++++|...+++..+. +- .....
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444444555555555555555443322 11 112334455555555556666555555554321 10 00123
Q ss_pred HHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHcCCCHHHHHH
Q 015590 235 TYSTLMHGLCEKGN--------------------VEEAFGLLERMESE----GIDA-DTVTFNILISGLRKQGKVEEGMK 289 (404)
Q Consensus 235 ~~~~li~~~~~~~~--------------------~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~ 289 (404)
++..+...|...|+ +++|...+++.... +..+ ....+..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55556666666666 66676666654321 1111 23467777788888888888888
Q ss_pred HHHHHhhC----CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCChHHHHH
Q 015590 290 LLERMKGK----GC-YPNSASYQEVLYGLLDKKRFPEAKELVGRMICERM-SPS----FVSYKKLIHGLCNQKLVEDVDW 359 (404)
Q Consensus 290 ~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~ 359 (404)
.+++..+. +. .....++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88877643 10 11134788888999999999999999998875310 112 4577888899999999999999
Q ss_pred HHHHHHHC----CCCCC-HHhHHHHHHhhccCCCCcchhhHHHhhhhh
Q 015590 360 VLKKMVQQ----GFVPR-MGMWREIVGCVTFGKDNRNRVYVTETVDSL 402 (404)
Q Consensus 360 ~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
.+++..+. +-.+. ..++..+-..+...|+.+.+...++..-++
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99988753 21111 336777778888999999998888776554
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=2.2e-12 Score=117.00 Aligned_cols=297 Identities=11% Similarity=0.014 Sum_probs=204.5
Q ss_pred HhcCCChhHHHHHHHHHhhCCC-CCCCH--HHHHHHHHHH--HhcCCchHHH-----------HHHHHHHhcccCCCChH
Q 015590 65 FSNLRDPISVISVLNQYSKRKD-YNPNE--ALYTLIINKL--AQAKRFDAIE-----------DIMQRIKVEKLCRFSDG 128 (404)
Q Consensus 65 ~~~~~~~~~a~~~~~~~~~~~~-~~p~~--~~~~~li~~~--~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 128 (404)
+.+.++.++|..+++.+.+..+ ...|. ..|..++..- .-.++++.+. +.++.+.... .+.+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 4457899999999999865422 22343 3334443321 1223344444 6666654322 01111
Q ss_pred ----HHHHHHHHHHhhcCCHHHHHHHHhhcccC----CCCc-cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCC-----
Q 015590 129 ----FFYNVIKIYGNMAGRISKAIETLFDMPSY----NCWP-SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGV----- 194 (404)
Q Consensus 129 ----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----- 194 (404)
.++.....++...|++++|...|++..+. +-.+ ...+|..+...+...|++++|...+++..+.--
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 11222334444489999999999987653 2112 235788899999999999999999998876411
Q ss_pred -CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC----CCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC
Q 015590 195 -EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ----NCE-PNVRTYSTLMHGLCEKGNVEEAFGLLERMESE----GI 264 (404)
Q Consensus 195 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~ 264 (404)
+....+++.+...|...|++++|...|++..+. +-. ....++..+...|...|++++|...|++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112457888999999999999999999887643 101 11247888999999999999999999998762 22
Q ss_pred -CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCC
Q 015590 265 -DADTVTFNILISGLRKQGKVEEGMKLLERMKGK----GCYPNSASYQEVLYGLLDKKR---FPEAKELVGRMICERMSP 336 (404)
Q Consensus 265 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p 336 (404)
+....++..+...|.+.|++++|...+++..+. +-......+..+...+...|+ +++|+.++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 334567888999999999999999999987654 111122335667777888888 77777777766 2333
Q ss_pred C-HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 337 S-FVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 337 ~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
+ ...+..+...|...|++++|...+++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 34677788999999999999999998875
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1.5e-12 Score=121.44 Aligned_cols=184 Identities=10% Similarity=-0.048 Sum_probs=104.0
Q ss_pred cCCH-HHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc--------
Q 015590 141 AGRI-SKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCEN-------- 211 (404)
Q Consensus 141 ~g~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-------- 211 (404)
.|++ ++|++.|++..+.. +.+...|..+...+.+.|++++|.+.|+...+.. |+...+..+...|...
T Consensus 115 ~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~ 191 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEH 191 (474)
T ss_dssp SSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHH
T ss_pred ccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhh
Confidence 5566 66666666555433 1224455666666666666666666666665542 4455555566666665
Q ss_pred -CChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHc
Q 015590 212 -GNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK--------GNVEEAFGLLERMESEGID--ADTVTFNILISGLRK 280 (404)
Q Consensus 212 -g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~ 280 (404)
|++++|...|++..+.. +.+...|..+..+|... |++++|+..|++..+.... -+...|..+...|..
T Consensus 192 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~ 270 (474)
T 4abn_A 192 SRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY 270 (474)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH
Confidence 66666666666655543 34455566666666655 6666666666666554210 145556666666666
Q ss_pred CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 015590 281 QGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 281 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 329 (404)
.|++++|.+.|++..+.. +-+...+..+...+...|++++|++.+.++
T Consensus 271 ~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 271 EESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666666666666665542 113445555666666666666666555443
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=1.6e-12 Score=121.21 Aligned_cols=216 Identities=12% Similarity=-0.021 Sum_probs=184.4
Q ss_pred CCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 142 GRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLY-GEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 142 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
+.++++++.+++..... +.+...|..+...+...|++ ++|++.|++..+.. +.+..+|..+...|.+.|++++|...
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44677777887766543 24677899999999999999 99999999999875 55688999999999999999999999
Q ss_pred HHHchhCCCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--------CC
Q 015590 221 LDEFPKQNCEPNVRTYSTLMHGLCEK---------GNVEEAFGLLERMESEGIDADTVTFNILISGLRKQ--------GK 283 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~ 283 (404)
|+...+. .|+...+..+...|... |++++|+..|++..+.... +...|..+...|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 9999887 46778999999999999 9999999999999887543 678899999999988 99
Q ss_pred HHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 015590 284 VEEGMKLLERMKGKGCY--PNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVL 361 (404)
Q Consensus 284 ~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 361 (404)
+++|...|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986310 377899999999999999999999999998763 345677888889999999999998765
Q ss_pred HH
Q 015590 362 KK 363 (404)
Q Consensus 362 ~~ 363 (404)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=6e-12 Score=110.16 Aligned_cols=238 Identities=15% Similarity=0.025 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHhhcccC-------CCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc------CC
Q 015590 128 GFFYNVIKIYGNMAGRISKAIETLFDMPSY-------NCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL------GV 194 (404)
Q Consensus 128 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~ 194 (404)
...+..+...+...|++++|..+|+++.+. ..+.....+..+...+...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 333444444444489999999999988762 22234567888889999999999999999988764 21
Q ss_pred -CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC------CC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----
Q 015590 195 -EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ------NC-EPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE---- 262 (404)
Q Consensus 195 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---- 262 (404)
+....++..+...|...|++++|...|++..+. +- +....++..+...|...|++++|...|++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 334567888889999999999999999987653 21 234556888888999999999999999988654
Q ss_pred --CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-------CCCCChh-------hHHHHHHHHHhcCChhHHHHH
Q 015590 263 --GIDA-DTVTFNILISGLRKQGKVEEGMKLLERMKGK-------GCYPNSA-------SYQEVLYGLLDKKRFPEAKEL 325 (404)
Q Consensus 263 --~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~-------~~~~li~~~~~~g~~~~a~~~ 325 (404)
+..| ...++..+...|...|++++|...++++.+. ...+... .+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 2122 3456788888999999999999999988753 1112211 122223333445666677777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 326 VGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 326 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
+...... .+.+..++..+..+|...|++++|.+++++..+
T Consensus 267 ~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7766543 133456788888999999999999999998874
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=1.6e-12 Score=113.83 Aligned_cols=190 Identities=15% Similarity=0.060 Sum_probs=104.9
Q ss_pred cCCHHHHHHHHhhcccC------CCCc-cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc------CC-CCCHhHHHHHHH
Q 015590 141 AGRISKAIETLFDMPSY------NCWP-SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL------GV-EIDACCLNILLK 206 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~ 206 (404)
.|++++|...|++.... +-.| ...++..+...+...|++++|...++++.+. +- +....++..+..
T Consensus 82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 55555555555554331 1112 2345666667777777777777777766653 11 223445666777
Q ss_pred HHHhcCChHHHHHHHHHchhC------C-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCH----
Q 015590 207 GLCENGNLEAAFYVLDEFPKQ------N-CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE-------GIDADT---- 268 (404)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~---- 268 (404)
.|...|++++|...|++..+. + .+....++..+...|...|++++|...|+++.+. ...+..
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 777777777777777776543 1 1223456777777788888888888888777642 111111
Q ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 269 ---VTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 269 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
..+..+...+...+.+.++...++...... ..+..++..+...|.+.|++++|.+++++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222233333444555555666555431 22456778888888889999999999888765
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=6.2e-11 Score=95.06 Aligned_cols=163 Identities=15% Similarity=0.048 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015590 200 CLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLR 279 (404)
Q Consensus 200 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 279 (404)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 44555556666666666666666665543 34555666666666666666666666666655422 24555666666666
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 015590 280 KQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDW 359 (404)
Q Consensus 280 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 359 (404)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6677777777766666542 2245566666667777777777777777766552 3455666777777777777777777
Q ss_pred HHHHHHH
Q 015590 360 VLKKMVQ 366 (404)
Q Consensus 360 ~~~~m~~ 366 (404)
.+++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=9.7e-11 Score=93.89 Aligned_cols=153 Identities=14% Similarity=0.047 Sum_probs=106.0
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
.|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...
T Consensus 21 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 98 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPL 98 (186)
T ss_dssp HTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 778888888888777653 2355667777777777788888888877777664 44566777777777777777777777
Q ss_pred HHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 221 LDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
++.+.+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+.
T Consensus 99 ~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 99 LIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77766554 455666777777777777777777777776655322 4556666666777777777777777666543
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=1.8e-11 Score=110.98 Aligned_cols=296 Identities=9% Similarity=-0.019 Sum_probs=202.8
Q ss_pred HHhcCCchHHHHHHHHHHhcccCC-CC-hH-HHHHHHHHHH-hhcCCHHHHH-----------HHHhhcccCCCCccHHH
Q 015590 101 LAQAKRFDAIEDIMQRIKVEKLCR-FS-DG-FFYNVIKIYG-NMAGRISKAI-----------ETLFDMPSYNCWPSVKT 165 (404)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~~-~~-~~-~~~~~l~~~~-~~~g~~~~A~-----------~~~~~m~~~~~~p~~~~ 165 (404)
+.+.+++++|..+++.+...-... .+ +. .++.++..-+ ...++.+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 457899999999999986543221 12 21 2233322211 1133444444 5555554321 11111
Q ss_pred ------HHHHHHHHHhcCcHhHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHchhC----C--
Q 015590 166 ------FNLVLNLLVSAKLYGEIQGIYTSAAKL----GVEI-DACCLNILLKGLCENGNLEAAFYVLDEFPKQ----N-- 228 (404)
Q Consensus 166 ------~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-- 228 (404)
+......+...|++++|...+++..+. +-++ ...++..+...|...|++++|...+++..+. +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222556678899999999999999864 2111 3467889999999999999999999887642 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CC
Q 015590 229 CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGID-AD----TVTFNILISGLRKQGKVEEGMKLLERMKGK----GC 299 (404)
Q Consensus 229 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~ 299 (404)
.+....+++.+...|...|++++|+..|++..+.... ++ ..++..+...|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 0122457888999999999999999999987643111 11 247888999999999999999999998772 22
Q ss_pred -CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHCCCCC
Q 015590 300 -YPNSASYQEVLYGLLDKKRFPEAKELVGRMICE----RMSPSFVSYKKLIHGLCNQKL---VEDVDWVLKKMVQQGFVP 371 (404)
Q Consensus 300 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p 371 (404)
.....++..+...+.+.|++++|.+.+++..+. +-+.....+..+...+...|+ +++|..++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 223567888999999999999999999988753 111122345667788889999 67777777665 4444
Q ss_pred CHH-hHHHHHHhhccCCCCcchhhHHHhhhh
Q 015590 372 RMG-MWREIVGCVTFGKDNRNRVYVTETVDS 401 (404)
Q Consensus 372 ~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~ 401 (404)
+.. .+..+-..|...|+.+.+...++..-+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 443 566666788899999888877766543
No 73
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.38 E-value=2.6e-10 Score=105.53 Aligned_cols=309 Identities=8% Similarity=-0.019 Sum_probs=203.1
Q ss_pred ccCCCCCC---CCCccchhhcccCCCCCHHHHHHHHhcCC-----ChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhc
Q 015590 33 LASPSASH---QDSDHHAYKLNHKDWLSPTEVLKIFSNLR-----DPISVISVLNQYSKRKDYNPNEALYTLIINKLAQA 104 (404)
Q Consensus 33 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 104 (404)
++...|.. ..+..++.+.-..+...+..+-..+...+ ++++|+..|++..+. | +...+..|...|...
T Consensus 44 ~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~~ 119 (452)
T 3e4b_A 44 IQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-G---EGNTLIPLAMLYLQY 119 (452)
T ss_dssp ---------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-T---CSSCHHHHHHHHHHC
T ss_pred HHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHhC
Confidence 33444555 56666666554446777777777555555 778999999999763 2 223666777777776
Q ss_pred CCchH---HHHHHHHHHhcccCCCChHHHHHHHHHHHhhcC----CHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcC
Q 015590 105 KRFDA---IEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAG----RISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAK 177 (404)
Q Consensus 105 ~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 177 (404)
+..++ +.+.+......+ .....+.+...+.. .+ ..+++..+++..... ++..+..+...|.+.|
T Consensus 120 ~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~-~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 120 PHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRT-QGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQ 190 (452)
T ss_dssp GGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHH-HTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHc-CCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcC
Confidence 65444 444444443332 12333444444443 45 455555566655543 3337888888898999
Q ss_pred ---cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc----CChHHHHHHHHHchhCCCCCcHHHHHHHHHH-H--HHcC
Q 015590 178 ---LYGEIQGIYTSAAKLGVEIDACCLNILLKGLCEN----GNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG-L--CEKG 247 (404)
Q Consensus 178 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~ 247 (404)
+.++|++.|+...+.| +++...+..+..+|... +++++|..+|+... .| +...+..+... | ...+
T Consensus 191 ~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~ 265 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELG 265 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGC
T ss_pred CcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCC
Confidence 9999999999999988 66777667788888665 79999999999987 43 55566666666 3 4688
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCC
Q 015590 248 NVEEAFGLLERMESEGIDADTVTFNILISGLRKQG-----KVEEGMKLLERMKGKGCYPNSASYQEVLYGLLD----KKR 318 (404)
Q Consensus 248 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 318 (404)
++++|+..|++..+.| +...+..|...|. .| +.++|...|++.. .| +...+..|...|.. ..+
T Consensus 266 d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 266 DVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcC
Confidence 9999999999998876 6677777877777 45 9999999999888 44 66777777777766 348
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCC
Q 015590 319 FPEAKELVGRMICERMSPSFVSYKKLIHGLCN----QKLVEDVDWVLKKMVQQGFV 370 (404)
Q Consensus 319 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~ 370 (404)
.++|.+.|++..+.|. | .....+...|.. ..+.++|...|+...+.|..
T Consensus 338 ~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 338 PQKALDHLLTAARNGQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHHHHTTTC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHhhCh-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 9999999999988763 3 344455556653 56899999999999887754
No 74
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.36 E-value=8.2e-11 Score=108.91 Aligned_cols=287 Identities=11% Similarity=0.038 Sum_probs=181.7
Q ss_pred CHHHHHHHHhcCCCh---hHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcC-----CchHHHHHHHHHHhcccCCCChH
Q 015590 57 SPTEVLKIFSNLRDP---ISVISVLNQYSKRKDYNPNEALYTLIINKLAQAK-----RFDAIEDIMQRIKVEKLCRFSDG 128 (404)
Q Consensus 57 ~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~ 128 (404)
++..+-..|...|++ ++|+..|++..+. ++..+..+...+...+ ++++|...|+.....+ . ..
T Consensus 37 A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~-~~ 107 (452)
T 3e4b_A 37 AQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG---E-GN 107 (452)
T ss_dssp GGGTCC---------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT---C-SS
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC---C-HH
Confidence 344444455556666 8888888887532 5556666666555554 6778888888877654 1 12
Q ss_pred HHHHHHHHHHhhcCC---HHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHH
Q 015590 129 FFYNVIKIYGNMAGR---ISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILL 205 (404)
Q Consensus 129 ~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 205 (404)
..+++-..+.. .+. -.++.+.+......| +...+..+...|...+.++++......+.+.-...+...+..|.
T Consensus 108 A~~~Lg~~y~~-~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg 183 (452)
T 3e4b_A 108 TLIPLAMLYLQ-YPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELA 183 (452)
T ss_dssp CHHHHHHHHHH-CGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444333333 222 144555555554433 34466667777777775554444433333222233444888999
Q ss_pred HHHHhcC---ChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 015590 206 KGLCENG---NLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK----GNVEEAFGLLERMESEGIDADTVTFNILISG- 277 (404)
Q Consensus 206 ~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~- 277 (404)
..|.+.| +.++|...|+...+.| +++...+..+...|... +++++|+..|++.. .| +...+..+...
T Consensus 184 ~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 184 TVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLL 258 (452)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHH
T ss_pred HHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHH
Confidence 9999999 9999999999999988 67777667777777655 69999999999987 32 56667777666
Q ss_pred H--HcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015590 278 L--RKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKK-----RFPEAKELVGRMICERMSPSFVSYKKLIHGLCN 350 (404)
Q Consensus 278 ~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 350 (404)
+ ...++.++|...|++..+.| +...+..|...|. .| ++++|.+.|++.. .-+...+..+...|..
T Consensus 259 ~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 259 YDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRR 330 (452)
T ss_dssp HHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHC
Confidence 4 56899999999999999887 6677777877776 45 9999999999887 3466777777777766
Q ss_pred ----CCChHHHHHHHHHHHHCCC
Q 015590 351 ----QKLVEDVDWVLKKMVQQGF 369 (404)
Q Consensus 351 ----~g~~~~a~~~~~~m~~~~~ 369 (404)
..+.++|...|++..+.|.
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CCCCCcCHHHHHHHHHHHHhhCh
Confidence 4489999999999887664
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=6.6e-10 Score=100.15 Aligned_cols=199 Identities=12% Similarity=0.069 Sum_probs=91.3
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHc----CCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCC----CCcHHH
Q 015590 167 NLVLNLLVSAKLYGEIQGIYTSAAKL----GVE--I-DACCLNILLKGLCENGNLEAAFYVLDEFPKQNC----EPNVRT 235 (404)
Q Consensus 167 ~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~ 235 (404)
..+...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++..+..- +....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 34444455555555555555554432 111 1 123344455555555555555555555432210 011234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHHHcCCCHHHHHHHHHHHhhCCCCCC---hhhH
Q 015590 236 YSTLMHGLCEKGNVEEAFGLLERMESEGIDADT-VTFN-----ILISGLRKQGKVEEGMKLLERMKGKGCYPN---SASY 306 (404)
Q Consensus 236 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~ 306 (404)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|+.++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 455555555666666666666555432111110 1111 122234455666666666655544321111 1133
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 307 QEVLYGLLDKKRFPEAKELVGRMICE----RMSPSF-VSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 307 ~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
..+...+...|++++|.+.+++.... |..++. ..+..+..++...|+.++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44555555666666666666555432 111111 134444455556666666666665544
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=2.4e-10 Score=103.28 Aligned_cols=296 Identities=7% Similarity=-0.050 Sum_probs=199.8
Q ss_pred hcCCChhHHHHHHHHHhhCC-CCCCCH--HHHHHHHHH--HHhcCCchHHH---------HHHHHHHhcccCCCChH---
Q 015590 66 SNLRDPISVISVLNQYSKRK-DYNPNE--ALYTLIINK--LAQAKRFDAIE---------DIMQRIKVEKLCRFSDG--- 128 (404)
Q Consensus 66 ~~~~~~~~a~~~~~~~~~~~-~~~p~~--~~~~~li~~--~~~~~~~~~a~---------~~~~~~~~~~~~~~~~~--- 128 (404)
...++.++|..+++.+.+.. ....|. ..|-.++.. ..-.+.++... +.++.+.... .+.++.
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~~~~~l~~ 101 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ-KKLTGLLKY 101 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG-HHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC-CCCccHHHH
Confidence 67789999999999875421 222333 333444432 11123333333 6666654322 001111
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhcccCCC-Cc----cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCC-----C-CC
Q 015590 129 FFYNVIKIYGNMAGRISKAIETLFDMPSYNC-WP----SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGV-----E-ID 197 (404)
Q Consensus 129 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~-~~ 197 (404)
.++.....++...|++++|+..|++..+.-. .+ ...++..+...+...|+++.|...+++..+... . ..
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 1222333344448999999999998765310 12 235788899999999999999999998875411 1 12
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHchhC----CCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCC
Q 015590 198 ACCLNILLKGLCENGNLEAAFYVLDEFPKQ----NCE-PNVRTYSTLMHGLCEKGNVEEAFGLLERMES-----EGIDAD 267 (404)
Q Consensus 198 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~p~ 267 (404)
..+++.+...|...|++++|...|++..+. +-+ ....++..+...|...|++++|...|++..+ .... .
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-L 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-H
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-H
Confidence 457888999999999999999999887642 211 1235788889999999999999999999876 4322 3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC----CCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-HH
Q 015590 268 TVTFNILISGLRKQGKVEEGMKLLERMKGKG----CYPNSASYQEVLYGLLDKKR---FPEAKELVGRMICERMSPS-FV 339 (404)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~ 339 (404)
..++..+...|.+.|++++|...+++..+.. -......+..+...+...++ +.+|+.++++. +..|+ ..
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~ 337 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHH
Confidence 6778889999999999999999999987642 11123345555566667777 77777777663 22333 34
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 340 SYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
.+..+...|...|++++|...|++..+
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666788999999999999999998864
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=6.8e-10 Score=100.05 Aligned_cols=270 Identities=11% Similarity=-0.023 Sum_probs=188.0
Q ss_pred HHHHhcCCChhHHHHHHHHHhhCCCCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCCh---HHHHHHH
Q 015590 62 LKIFSNLRDPISVISVLNQYSKRKDYNPNE----ALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSD---GFFYNVI 134 (404)
Q Consensus 62 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l 134 (404)
-..+...|++++|...+++.+...+ ..+. .++..+...+...|++++|.+.+++.........+. ......+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456678999999999999877542 1222 246667778889999999999999876532111111 1112233
Q ss_pred HHHHhhcCCHHHHHHHHhhcccC----CCC--c-cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCC--C--CHhHHHH
Q 015590 135 KIYGNMAGRISKAIETLFDMPSY----NCW--P-SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVE--I--DACCLNI 203 (404)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~--~~~~~~~ 203 (404)
...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++..+..-. + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 33333489999999999887542 221 2 2346677888899999999999999998765321 1 2356778
Q ss_pred HHHHHHhcCChHHHHHHHHHchhCCCCCc-HHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHH
Q 015590 204 LLKGLCENGNLEAAFYVLDEFPKQNCEPN-VRTYS-----TLMHGLCEKGNVEEAFGLLERMESEGIDA---DTVTFNIL 274 (404)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l 274 (404)
+...+...|++++|...+++.....-.++ ...+. ..+..+...|++++|...+++.......+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 88999999999999999998764311111 11222 23345779999999999999887543221 12356777
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhC----CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 275 ISGLRKQGKVEEGMKLLERMKGK----GCYPNS-ASYQEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 275 i~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++....
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88899999999999999987643 222222 35666777888999999999999988753
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=8.4e-11 Score=114.24 Aligned_cols=165 Identities=16% Similarity=0.094 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHH
Q 015590 163 VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG 242 (404)
Q Consensus 163 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 242 (404)
..+|+.+...+.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...|++..+.. +-+..+|..+...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4578888888888888888888888887764 4457778888888888888888888888877764 5567788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHH
Q 015590 243 LCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEA 322 (404)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 322 (404)
|.+.|++++|++.|++..+.... +...|+.+...|...|++++|++.|++..+... -+...+..+...+...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHH
Confidence 88888888888888887766433 567788888888888888888888888877631 1456778888888888888888
Q ss_pred HHHHHHHHH
Q 015590 323 KELVGRMIC 331 (404)
Q Consensus 323 ~~~~~~~~~ 331 (404)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=2.9e-11 Score=104.06 Aligned_cols=203 Identities=15% Similarity=0.050 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHc------CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC------C-
Q 015590 163 VKTFNLVLNLLVSAKLYGEIQGIYTSAAKL------GV-EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ------N- 228 (404)
Q Consensus 163 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~- 228 (404)
..++..+...+...|++++|...++++.+. +- +....++..+...|...|++++|...|++..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345666666666666666666666665543 11 223445666666666667766666666665442 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC----
Q 015590 229 CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE------GIDA-DTVTFNILISGLRKQGKVEEGMKLLERMKGK---- 297 (404)
Q Consensus 229 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 297 (404)
.+....++..+...|...|++++|...|++..+. +-.| ...++..+...|...|++++|...+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1223455666667777777777777777666543 1112 2345666777777777777777777766542
Q ss_pred ---CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHH---C-C--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 298 ---GCYPNS-ASYQEVLYGLLDKKRFPEAKELVGRMIC---E-R--MSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 298 ---~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~---~-~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
...+.. ..|..+.......+....+.. +..+.. . + .+....++..+...|...|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112222 223333333333232222222 211111 0 1 112335677788888889999999998888764
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=1.2e-10 Score=113.15 Aligned_cols=168 Identities=18% Similarity=0.076 Sum_probs=148.3
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015590 195 EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNIL 274 (404)
Q Consensus 195 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 274 (404)
|-+..+++.|...|.+.|++++|.+.|++..+.. +-+..+|+.+...|.+.|++++|+..|++..+.... +...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3457789999999999999999999999998875 567889999999999999999999999999887433 57889999
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 015590 275 ISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLV 354 (404)
Q Consensus 275 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 354 (404)
...|...|++++|++.|++..+... -+...|..+...+.+.|++++|++.|++..+.. +-+...|..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 9999999999999999999988732 256889999999999999999999999998863 33578899999999999999
Q ss_pred HHHHHHHHHHHH
Q 015590 355 EDVDWVLKKMVQ 366 (404)
Q Consensus 355 ~~a~~~~~~m~~ 366 (404)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=9.7e-10 Score=91.67 Aligned_cols=199 Identities=12% Similarity=-0.003 Sum_probs=125.4
Q ss_pred cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHH
Q 015590 162 SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMH 241 (404)
Q Consensus 162 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 241 (404)
|+..+......+...|++++|...|+...+...+++...+..+..+|...|++++|...|+...+.. +.+..+|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4566666777777777777777777777766532566666667777777777777777777776654 445666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHH
Q 015590 242 GLCEKGNVEEAFGLLERMESEGIDADT-------VTFNILISGLRKQGKVEEGMKLLERMKGKGCYPN---SASYQEVLY 311 (404)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~ 311 (404)
.|...|++++|+..|++..+.... +. ..|..+...+...|++++|...|++..+. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 777777777777777777665322 23 34666666777777788888888777765 343 345555555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 015590 312 GLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMG 374 (404)
Q Consensus 312 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 374 (404)
.+... +..+++++...+ ..+...|.... ....+.+++|...+++..+ +.|+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~ 214 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRT 214 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCH
Confidence 55443 333444444432 23344444333 2234557788888877774 345443
No 82
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.27 E-value=2.4e-08 Score=96.00 Aligned_cols=201 Identities=7% Similarity=-0.068 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHhcCChHHHH-HHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------CCC-
Q 015590 199 CCLNILLKGLCENGNLEAAF-YVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGI---------DAD- 267 (404)
Q Consensus 199 ~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~---------~p~- 267 (404)
..|-..+..+...|+.++|. .+|+..... ++.+...|-..+...-+.|++++|..+|+++.+... .|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 34444455556677777886 888887764 256667788888888889999999999998875310 132
Q ss_pred -----------HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCC
Q 015590 268 -----------TVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDK-KRFPEAKELVGRMICERMS 335 (404)
Q Consensus 268 -----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~ 335 (404)
...|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+. ++.+.|.++|+...+. .+
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p 501 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FA 501 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HT
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CC
Confidence 2367777888788889999999999988761122334444333333344 4589999999988876 45
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC--CHHhHHHHHHhhccCCCCcchhhHHHhhhh
Q 015590 336 PSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVP--RMGMWREIVGCVTFGKDNRNRVYVTETVDS 401 (404)
Q Consensus 336 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 401 (404)
-+...|...++.....|+.+.|+.+|+..++....+ ....|...+..-...|+.+.+..|.+.+.+
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566777788888888899999999999988543322 234677777776778888888888877653
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=1.1e-10 Score=100.55 Aligned_cols=230 Identities=13% Similarity=0.062 Sum_probs=150.9
Q ss_pred cCCChhHHHHHHHHHhhC------CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-----cCCCChHHHHHHHH
Q 015590 67 NLRDPISVISVLNQYSKR------KDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEK-----LCRFSDGFFYNVIK 135 (404)
Q Consensus 67 ~~~~~~~a~~~~~~~~~~------~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~l~ 135 (404)
..|++++|+..|++.++. ...+....++..+...+...|++++|...++.+.... ...+.....+..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 346666666666665541 1123346778899999999999999999999876541 11223333444444
Q ss_pred HHHhhcCCHHHHHHHHhhcccC------CCCc-cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc------C-CCCCHhHH
Q 015590 136 IYGNMAGRISKAIETLFDMPSY------NCWP-SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL------G-VEIDACCL 201 (404)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g-~~~~~~~~ 201 (404)
..+...|++++|.+.|++..+. .-.| ...++..+...+...|++++|...+++..+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4444599999999999987653 1113 3567888999999999999999999998875 1 12345678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHchhC-------CCCC-cHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCCC
Q 015590 202 NILLKGLCENGNLEAAFYVLDEFPKQ-------NCEP-NVRTYSTLMHGLCEKGNVE------EAFGLLERMESEGIDAD 267 (404)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~~~~~------~A~~~~~~m~~~~~~p~ 267 (404)
..+...|...|++++|...+++..+. ...+ ....|..+...+...+... ++...++..... ....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 88999999999999999999987653 1122 2233444433333333322 222222221111 1123
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 268 TVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
..++..+...|...|++++|...|++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457888999999999999999999988754
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=7.7e-10 Score=92.28 Aligned_cols=154 Identities=12% Similarity=-0.055 Sum_probs=127.8
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015590 196 IDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILI 275 (404)
Q Consensus 196 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 275 (404)
.|+..+......+...|++++|...|+...+...+++...+..+...+...|++++|+..|++..+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888899999999999999999999988763378888888999999999999999999999887543 567888999
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 015590 276 SGLRKQGKVEEGMKLLERMKGKGCYPNS-------ASYQEVLYGLLDKKRFPEAKELVGRMICERMSPS---FVSYKKLI 345 (404)
Q Consensus 276 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li 345 (404)
..|...|++++|...|++..+... .+. ..|..+...+...|++++|++.+++..+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 999999999999999999988631 133 45777888889999999999999999875 565 46677777
Q ss_pred HHHHcCCC
Q 015590 346 HGLCNQKL 353 (404)
Q Consensus 346 ~~~~~~g~ 353 (404)
.+|...|+
T Consensus 161 ~~~~~~~~ 168 (228)
T 4i17_A 161 VLFYNNGA 168 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77765554
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.24 E-value=2e-08 Score=86.22 Aligned_cols=249 Identities=10% Similarity=0.040 Sum_probs=171.2
Q ss_pred HHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhc
Q 015590 62 LKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMA 141 (404)
Q Consensus 62 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (404)
|+-..-.|++..++.-...+ .+..++ ..-.-+.+++...|+++.. . ...+......++..|.. .
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~-~~~~~~~Rs~iAlg~~~~~---------~--~~~~~~~a~~~la~~~~-~ 83 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDN-TLLFYKAKTLLALGQYQSQ---------D--PTSKLGKVLDLYVQFLD-T 83 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCH-HHHHHHHHHHHHTTCCCCC---------C--SSSTTHHHHHHHHHHHT-T
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchH-HHHHHHHHHHHHcCCCccC---------C--CCCHHHHHHHHHHHHhc-c
Confidence 45566678999888844333 222333 3444556788888887741 1 12233334555566654 2
Q ss_pred CCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 142 GRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGV-EIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 142 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
+ |+..|++..+.+ .++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.
T Consensus 84 ~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 84 K----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp T----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 788888887765 45666667888899999999999999998876652 24667788889999999999999999
Q ss_pred HHHchhCCCCC-----cHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 015590 221 LDEFPKQNCEP-----NVRTYSTLMHG--LCEKG--NVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLL 291 (404)
Q Consensus 221 ~~~~~~~~~~~-----~~~~~~~li~~--~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 291 (404)
++.|.+. .| +..+...++.+ ....| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.+
T Consensus 159 l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 159 FDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 9999876 45 34555556655 33334 899999999998766 345334444555888999999999999
Q ss_pred HHHhhCC---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 015590 292 ERMKGKG---------CYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFV 339 (404)
Q Consensus 292 ~~m~~~~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 339 (404)
+.+.+.- -+-+..+...+|......|+ +|.++++++.+. .|+..
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 8766530 02256677666666666776 888999999875 45543
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=3.8e-09 Score=95.37 Aligned_cols=187 Identities=12% Similarity=0.094 Sum_probs=108.7
Q ss_pred cCCHHHHHHHHhhcccC----C-CCc-cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc----CCC-CCHhHHHHHHHHHH
Q 015590 141 AGRISKAIETLFDMPSY----N-CWP-SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL----GVE-IDACCLNILLKGLC 209 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~----~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~ 209 (404)
.|++++|...+++..+. + ..+ ...+++.+...+...|++++|.+.+++..+. +-+ ....++..+...|.
T Consensus 154 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 154 MKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD 233 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 55555555555544321 1 011 1345666666677777777777776665542 111 12345666777777
Q ss_pred hcCChHHHHHHHHHchh-----CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHc
Q 015590 210 ENGNLEAAFYVLDEFPK-----QNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGI----DADTVTFNILISGLRK 280 (404)
Q Consensus 210 ~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----~p~~~~~~~li~~~~~ 280 (404)
..|++++|...|++..+ .. +....++..+...|.+.|++++|...+++..+... +.....+..+...+..
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~ 312 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE 312 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS
T ss_pred HCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 77777777777776654 32 33355666777777777777777777777654321 1122344555555666
Q ss_pred CCC---HHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 281 QGK---VEEGMKLLERMKGKGCYP-NSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 281 ~g~---~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
.|+ ..+|...+++.. ..| ....+..+...|...|++++|.+.|++..+
T Consensus 313 ~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 313 TVDERKIHDLLSYFEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666 666666665522 122 234556677777777888888877777654
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=2.4e-09 Score=80.57 Aligned_cols=125 Identities=15% Similarity=0.163 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc
Q 015590 167 NLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK 246 (404)
Q Consensus 167 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 246 (404)
..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 333444444444444444444444332 2233334444444444444444444444443332 22333344444444444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015590 247 GNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERM 294 (404)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 294 (404)
|++++|...++++.+.... +...+..+...+...|++++|...++++
T Consensus 83 ~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 4444444444444332211 2333333334444444444444444433
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=2e-09 Score=93.46 Aligned_cols=211 Identities=12% Similarity=0.017 Sum_probs=151.9
Q ss_pred CHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHHhcCChHHH
Q 015590 143 RISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKL----GVEID-ACCLNILLKGLCENGNLEAA 217 (404)
Q Consensus 143 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~a 217 (404)
++++|...|++. ...|...|++++|...|++..+. |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 478887777765 44677889999999999887654 32222 56888999999999999999
Q ss_pred HHHHHHchhC----CCCCc--HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHcCCCHH
Q 015590 218 FYVLDEFPKQ----NCEPN--VRTYSTLMHGLCEK-GNVEEAFGLLERMESEGIDA-D----TVTFNILISGLRKQGKVE 285 (404)
Q Consensus 218 ~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~ 285 (404)
...|++..+. | .+. ..+++.+...|... |++++|+..|++..+..... + ..++..+...+...|+++
T Consensus 97 ~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 97 VDSLENAIQIFTHRG-QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 9998877643 2 111 45788889999996 99999999999876531110 1 356888899999999999
Q ss_pred HHHHHHHHHhhCCCCCCh------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--cC
Q 015590 286 EGMKLLERMKGKGCYPNS------ASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSF------VSYKKLIHGLC--NQ 351 (404)
Q Consensus 286 ~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~li~~~~--~~ 351 (404)
+|...|++..+....... ..|..+..++...|++++|...+++..+. .|+. ..+..++.++. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999999999886332221 15677778889999999999999998763 3432 13444556664 45
Q ss_pred CChHHHHHHHHHHHHCCCCCCH
Q 015590 352 KLVEDVDWVLKKMVQQGFVPRM 373 (404)
Q Consensus 352 g~~~~a~~~~~~m~~~~~~p~~ 373 (404)
+++++|...|+.+. .+.|+.
T Consensus 254 ~~~~~A~~~~~~~~--~l~~~~ 273 (292)
T 1qqe_A 254 EQLSEHCKEFDNFM--RLDKWK 273 (292)
T ss_dssp TTHHHHHHHHTTSS--CCCHHH
T ss_pred HHHHHHHHHhccCC--ccHHHH
Confidence 67888888887664 455544
No 89
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.16 E-value=3.3e-08 Score=95.10 Aligned_cols=343 Identities=11% Similarity=0.041 Sum_probs=207.8
Q ss_pred ccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHhcccCCCCh
Q 015590 51 NHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKR---FDAIEDIMQRIKVEKLCRFSD 127 (404)
Q Consensus 51 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~ 127 (404)
++-|..+|..++..+.+.+..+.+..+|+.++.. ++.....|...+..-.+.++ ++.+..+|++.......+ ++
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~-~s 138 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGN-ND 138 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCC-CC
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCC-CC
Confidence 3457889999999999999999999999999876 57778889999988888888 999999999987543112 34
Q ss_pred HHHHHHHHHHHhhcCCH--------HHHHHHHhhccc-CCC-Ccc-HHHHHHHHHHHH---------hcCcHhHHHHHHH
Q 015590 128 GFFYNVIKIYGNMAGRI--------SKAIETLFDMPS-YNC-WPS-VKTFNLVLNLLV---------SAKLYGEIQGIYT 187 (404)
Q Consensus 128 ~~~~~~l~~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~ 187 (404)
..+|..-..+....++. +...++|+.... .|. .|+ ...|...+.... ..++++.+..+|+
T Consensus 139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ 218 (679)
T 4e6h_A 139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence 44555544444434432 344577776543 454 443 467777776543 2345677888888
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHh-------------cCChHHHHHH----------------------------------
Q 015590 188 SAAKLGVEIDACCLNILLKGLCE-------------NGNLEAAFYV---------------------------------- 220 (404)
Q Consensus 188 ~~~~~g~~~~~~~~~~li~~~~~-------------~g~~~~a~~~---------------------------------- 220 (404)
.++......-..+|......--. ..+++.|..+
T Consensus 219 raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 219 TLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp HHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred HHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 87743111111222111110000 0112222222
Q ss_pred ---------------------------------HHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCC
Q 015590 221 ---------------------------------LDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAF-GLLERMESEGIDA 266 (404)
Q Consensus 221 ---------------------------------~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~~~~p 266 (404)
|++....- +.+...|-..+.-+.+.|+.++|. .+|++.... ++.
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~ 376 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPN 376 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCC
Confidence 22222211 223334444555555667777775 888877654 223
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC---------CCCC------------hhhHHHHHHHHHhcCChhHHHHH
Q 015590 267 DTVTFNILISGLRKQGKVEEGMKLLERMKGKG---------CYPN------------SASYQEVLYGLLDKKRFPEAKEL 325 (404)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~li~~~~~~g~~~~a~~~ 325 (404)
+...|...+....+.|++++|..+|+++.... ..|+ ...|...+....+.|..+.|.++
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55556777777888888888888888877531 0132 23577777777778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhh
Q 015590 326 VGRMICERMSPSFVSYKKLIHGLCNQ-KLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETV 399 (404)
Q Consensus 326 ~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 399 (404)
|.++.+.-..+....|...+..-.+. ++.+.|.++|+..++. +.-+...|...+......++.+.+..+++..
T Consensus 457 f~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 457 FGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 88887651112233343333322333 4588888888888875 3334455666666666667777777777653
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=3.8e-09 Score=79.53 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 015590 236 YSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLD 315 (404)
Q Consensus 236 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 315 (404)
|..+...+...|++++|..+|+++.+.+.. +...+..+...+...|++++|...++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 333444444444444444444444433211 33344444444444444444444444444332 1133444444555555
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 316 KKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 316 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 555555555555554431 2234445555555555555555555555554
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=1.7e-09 Score=105.32 Aligned_cols=170 Identities=11% Similarity=0.001 Sum_probs=81.9
Q ss_pred hcCCChhHHHHHHHHHh--------hCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHH-HHHHHHH
Q 015590 66 SNLRDPISVISVLNQYS--------KRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGF-FYNVIKI 136 (404)
Q Consensus 66 ~~~~~~~~a~~~~~~~~--------~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~ 136 (404)
...|++++|+..|++++ +. .+.+...+..+...+...|++++|.+.++.+.+.. |.+.. ++++-..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHH
Confidence 44555555555555554 21 12334445555555555555555555555554433 22222 2222222
Q ss_pred HHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 015590 137 YGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEA 216 (404)
Q Consensus 137 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 216 (404)
+.. .|++++|++.|++..+.. +-+...|..+..++.+.|++++ ++.|++..+.. +.+...+..+..+|.+.|++++
T Consensus 477 ~~~-~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 477 ELL-TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHH-HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHH-cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHH
Confidence 332 555555555555554432 1123445555555555555555 55555555543 3344455555555555555555
Q ss_pred HHHHHHHchhCCCCCcHHHHHHHHHHHHH
Q 015590 217 AFYVLDEFPKQNCEPNVRTYSTLMHGLCE 245 (404)
Q Consensus 217 a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 245 (404)
|...|++..+.+ +.+...|..+..++..
T Consensus 553 A~~~~~~al~l~-P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 553 AVRTLDEVPPTS-RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHTSCTTS-TTHHHHHHHHHHHTC-
T ss_pred HHHHHHhhcccC-cccHHHHHHHHHHHHc
Confidence 555555555442 2233444444444433
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.11 E-value=5.6e-09 Score=85.77 Aligned_cols=131 Identities=14% Similarity=0.097 Sum_probs=66.0
Q ss_pred HHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 015590 204 LLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGK 283 (404)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 283 (404)
+..+|.+.|++++|...|++..+.. +.+...|..+...|...|++++|+..|++..+.... +..+|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 5566666666666666666665554 445556666666666666666666666666554322 44555555555543332
Q ss_pred --HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 015590 284 --VEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVS 340 (404)
Q Consensus 284 --~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 340 (404)
.+.+...++..... .|....+.....++...|++++|...|++..+ ..|+...
T Consensus 138 ~~~~~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~ 192 (208)
T 3urz_A 138 QEKKKLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEA 192 (208)
T ss_dssp HHHHHHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHH
T ss_pred HHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHH
Confidence 22333333333211 11112222233334445566666666666654 2455433
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=4.8e-08 Score=83.80 Aligned_cols=178 Identities=13% Similarity=0.069 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 182 IQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNC-EPNVRTYSTLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 182 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
++..+++..+.+ +++..+...+..++...|++++|++++.+....|- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555444 34444445666666666666666666666554431 1345556666666666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHHH--Hc--CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 261 SEGIDA-----DTVTFNILISGL--RK--QGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 261 ~~~~~p-----~~~~~~~li~~~--~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
+. .| +..+...+..++ .. .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 234444444442 22 23666666666666554 33322333333356666666666666665543
Q ss_pred C-----CC----CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 332 E-----RM----SPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 332 ~-----~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
. +. +-|..+...+|......|+ +|.++++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 2 00 2234444344444444554 66666666663
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=7.1e-09 Score=90.03 Aligned_cols=188 Identities=10% Similarity=0.002 Sum_probs=129.8
Q ss_pred cCCHHHHHHHHhhcccC----CCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCC---CC--CHhHHHHHHHHHHh
Q 015590 141 AGRISKAIETLFDMPSY----NCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGV---EI--DACCLNILLKGLCE 210 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~li~~~~~ 210 (404)
.|++++|.+.|++..+. |-+++ ..+|+.+..+|.+.|++++|+..+++..+... .+ -..+++.+...|..
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 129 (292)
T 1qqe_A 50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN 129 (292)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 67777777776655431 21122 45788888888888888888888887765421 11 13577888888998
Q ss_pred c-CChHHHHHHHHHchhCCC---CC-c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHH
Q 015590 211 N-GNLEAAFYVLDEFPKQNC---EP-N-VRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTV------TFNILISGL 278 (404)
Q Consensus 211 ~-g~~~~a~~~~~~~~~~~~---~~-~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~ 278 (404)
. |++++|...|++..+... .+ . ..+++.+...|.+.|++++|+..|++..+........ .|..+..++
T Consensus 130 ~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 209 (292)
T 1qqe_A 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209 (292)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence 6 999999999988765310 11 1 3568888999999999999999999988764432221 567778888
Q ss_pred HcCCCHHHHHHHHHHHhhCCCCCCh------hhHHHHHHHHH--hcCChhHHHHHHHHHH
Q 015590 279 RKQGKVEEGMKLLERMKGKGCYPNS------ASYQEVLYGLL--DKKRFPEAKELVGRMI 330 (404)
Q Consensus 279 ~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~--~~g~~~~a~~~~~~~~ 330 (404)
...|++++|...|++..+. .|+. ..+..++.++. ..+++++|++.|+.+.
T Consensus 210 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 210 LAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 8999999999999998865 2221 13444555554 3466788888877664
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=1.1e-08 Score=87.13 Aligned_cols=95 Identities=12% Similarity=0.038 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcccCCCCcc----HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCC--CCCHhHHHH
Q 015590 130 FYNVIKIYGNMAGRISKAIETLFDMPSYNCWPS----VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGV--EIDACCLNI 203 (404)
Q Consensus 130 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~ 203 (404)
.+.....+.. .|++++|...|+++.+.. |+ ...+..+..++.+.|++++|...|+...+... +.....+..
T Consensus 18 ~~~~a~~~~~-~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 18 AFERAMEFYN-QGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3333333433 555555555555555432 22 33445555555555555555555555555421 111233444
Q ss_pred HHHHHHh--------cCChHHHHHHHHHchhC
Q 015590 204 LLKGLCE--------NGNLEAAFYVLDEFPKQ 227 (404)
Q Consensus 204 li~~~~~--------~g~~~~a~~~~~~~~~~ 227 (404)
+..++.. .|++++|...|+++.+.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 4444554 55555555555554443
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=5.9e-09 Score=88.86 Aligned_cols=105 Identities=4% Similarity=-0.158 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCC-hHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCC-Ccc-HH
Q 015590 88 NPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFS-DGFFYNVIKIYGNMAGRISKAIETLFDMPSYNC-WPS-VK 164 (404)
Q Consensus 88 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~-~~ 164 (404)
+.+...+..+...+.+.|++++|...|+.+.......+. ...++.+...+.. .|++++|+..|++..+... .|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345666777777777888888888888887655411111 2333444444444 7888888888887766421 112 34
Q ss_pred HHHHHHHHHHh--------cCcHhHHHHHHHHHHHcC
Q 015590 165 TFNLVLNLLVS--------AKLYGEIQGIYTSAAKLG 193 (404)
Q Consensus 165 ~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~g 193 (404)
.+..+..++.. .|++++|+..|+++.+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 56666777777 788888888888877763
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=9.7e-09 Score=84.32 Aligned_cols=138 Identities=9% Similarity=0.010 Sum_probs=103.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 015590 236 YSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLD 315 (404)
Q Consensus 236 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 315 (404)
++.+...|.+.|++++|+..|++..+.... +...+..+...+...|++++|...|++..+.. +-+...|..+...|..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344888999999999999999999887544 67889999999999999999999999999874 2256788888887766
Q ss_pred cCC--hhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 015590 316 KKR--FPEAKELVGRMICERMSPSFV--SYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVG 381 (404)
Q Consensus 316 ~g~--~~~a~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 381 (404)
.|+ .+.+...+.... .|+.. .+.....++...|++++|...|++.+ .+.|+......+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al--~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI--LRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TTSCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCHHHHHHHHH
Confidence 553 345555565553 34443 34445556777899999999999998 67788765554443
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=5.8e-08 Score=79.90 Aligned_cols=178 Identities=15% Similarity=0.027 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcC----CHHHHHHHH
Q 015590 181 EIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKG----NVEEAFGLL 256 (404)
Q Consensus 181 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~A~~~~ 256 (404)
+|.+.|+...+.| +...+..+...|...+++++|..+|+...+.| +..++..+...|.. + ++++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 45556666666666667777777776666554 44555555555555 4 677777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHh----cCChhHHHHHHH
Q 015590 257 ERMESEGIDADTVTFNILISGLRK----QGKVEEGMKLLERMKGKGCY-PNSASYQEVLYGLLD----KKRFPEAKELVG 327 (404)
Q Consensus 257 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~ 327 (404)
++..+.| +...+..|...|.. .+++++|..+|++..+.|.. .+...+..|-..|.. .+++++|.+.|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7766553 45566666666665 66777777777777766421 014566666666666 667777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcC-C-----ChHHHHHHHHHHHHCCCC
Q 015590 328 RMICERMSPSFVSYKKLIHGLCNQ-K-----LVEDVDWVLKKMVQQGFV 370 (404)
Q Consensus 328 ~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~~~ 370 (404)
+..+. ..+...+..+...|... | +.++|...|++..+.|..
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 77664 23334555555555432 2 677777777777766543
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.03 E-value=1.1e-08 Score=81.49 Aligned_cols=161 Identities=12% Similarity=0.006 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHH-HH
Q 015590 166 FNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG-LC 244 (404)
Q Consensus 166 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~ 244 (404)
+......+.+.|++++|...|++..+.. |.+...+..+...|...|++++|...|+...+.. |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3344445555666666666665555442 3345555556666666666666666666555442 233222221111 11
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCChhHHH
Q 015590 245 EKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYP-NSASYQEVLYGLLDKKRFPEAK 323 (404)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~ 323 (404)
+.+...+|...|++..+.... +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 112223345555555544222 34555566666666666666666666666553221 2345556666666666666666
Q ss_pred HHHHHHH
Q 015590 324 ELVGRMI 330 (404)
Q Consensus 324 ~~~~~~~ 330 (404)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=3.9e-08 Score=85.11 Aligned_cols=166 Identities=16% Similarity=0.061 Sum_probs=122.1
Q ss_pred ccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHH-H
Q 015590 161 PSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYST-L 239 (404)
Q Consensus 161 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l 239 (404)
.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...|...|++++|...++.+.... |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 344566777777888888888888888888775 5567788888888888888888888888887663 44433222 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCC
Q 015590 240 MHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCY-PNSASYQEVLYGLLDKKR 318 (404)
Q Consensus 240 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~ 318 (404)
...+.+.++.++|...|++....... +...+..+...+...|++++|...|.++.+.... .+...+..+...+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 33366677778888888887776433 5677788888888888888888888888876322 125677888888888888
Q ss_pred hhHHHHHHHHHH
Q 015590 319 FPEAKELVGRMI 330 (404)
Q Consensus 319 ~~~a~~~~~~~~ 330 (404)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888888777654
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.01 E-value=3.2e-07 Score=79.32 Aligned_cols=216 Identities=11% Similarity=-0.014 Sum_probs=132.7
Q ss_pred HHHHHHHhhcccCCCCcc-HHHHHHHHHHHHhcC--cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHH----Hhc---CCh
Q 015590 145 SKAIETLFDMPSYNCWPS-VKTFNLVLNLLVSAK--LYGEIQGIYTSAAKLGVEIDACCLNILLKGL----CEN---GNL 214 (404)
Q Consensus 145 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~~---g~~ 214 (404)
++|+++++++...+ |+ ...|+.--..+...+ ++++++++++.+.... +-+..+|+.--..+ .+. +++
T Consensus 50 ~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 45555555555533 33 234555555555555 6666666666666553 33444454443333 333 566
Q ss_pred HHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC------HHH
Q 015590 215 EAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVE--EAFGLLERMESEGIDADTVTFNILISGLRKQGK------VEE 286 (404)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~~ 286 (404)
++++.+++.+.+.. +.+..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.-...+.+.|. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 77777777766655 566667766666666666666 777777777766554 66666665555555555 677
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 015590 287 GMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPE-AKELVGRMICER--MSPSFVSYKKLIHGLCNQKLVEDVDWVLKK 363 (404)
Q Consensus 287 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 363 (404)
+++.++++....+. |...|+.+-..+.+.|+..+ +..+..++.+.+ -..+...+..+.++|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 77777777766422 66677776666666666433 445555554432 134667777777888888888888888888
Q ss_pred HHH
Q 015590 364 MVQ 366 (404)
Q Consensus 364 m~~ 366 (404)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=5.4e-08 Score=84.16 Aligned_cols=166 Identities=14% Similarity=0.026 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHH
Q 015590 88 NPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFN 167 (404)
Q Consensus 88 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 167 (404)
+.+...+..+...+...|++++|...++.+.... |.+...+..+...+...|++++|...+++..... |+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~ 188 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS---NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQG 188 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHH
Confidence 3445566667777777788888888887776554 3333333333333333778888888887776643 4443222
Q ss_pred H-HHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCc--HHHHHHHHHHHH
Q 015590 168 L-VLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPN--VRTYSTLMHGLC 244 (404)
Q Consensus 168 ~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~ 244 (404)
. ....+.+.++.++|.+.+++..+.. +.+...+..+...|...|++++|...|.++.+.. +.+ ...+..+...+.
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHH
Confidence 2 2223555666667777777777664 5566777777777777777777777777776653 212 556777777777
Q ss_pred HcCCHHHHHHHHHHHH
Q 015590 245 EKGNVEEAFGLLERME 260 (404)
Q Consensus 245 ~~~~~~~A~~~~~~m~ 260 (404)
..|+.++|...|++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 7777777777766543
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=2.5e-08 Score=97.05 Aligned_cols=173 Identities=9% Similarity=-0.083 Sum_probs=138.8
Q ss_pred HhcCcHhHHHHHHHHHH--------HcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH
Q 015590 174 VSAKLYGEIQGIYTSAA--------KLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE 245 (404)
Q Consensus 174 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 245 (404)
...|++++|++.+++.. +.. +.+...+..+...|...|++++|...|++..+.+ +.+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67889999999999988 432 5566788888999999999999999999988765 5677889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 015590 246 KGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKEL 325 (404)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 325 (404)
.|++++|+..|++..+.... +...|..+...|.+.|++++ .+.|++..+.+ +-+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998876433 56788888899999999999 99999988764 22567888899999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHcCCC
Q 015590 326 VGRMICERMSPS-FVSYKKLIHGLCNQKL 353 (404)
Q Consensus 326 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 353 (404)
|+++.+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988764 555 4566667777766554
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=1.7e-08 Score=96.30 Aligned_cols=152 Identities=7% Similarity=-0.119 Sum_probs=68.6
Q ss_pred CCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHH
Q 015590 105 KRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQG 184 (404)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 184 (404)
|++++|.+.+++..+.. |.+...+..+...+...|++++|.+.|++..+.. +.+...|..+...+...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555554332 2222222222222222555666666555555433 1234455555555555556666665
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 015590 185 IYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK---GNVEEAFGLLERMES 261 (404)
Q Consensus 185 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~ 261 (404)
.+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|...+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 555555543 3344555555555555555555555555555443 33445555555555555 555555555555554
Q ss_pred C
Q 015590 262 E 262 (404)
Q Consensus 262 ~ 262 (404)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 4
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=5.9e-09 Score=80.73 Aligned_cols=137 Identities=12% Similarity=0.025 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHhhcccCCCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 219 (404)
.|++++|+..+....... |+ ...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|..
T Consensus 10 ~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 566777777776665532 33 2345566667777777777777777776664 4566677777777777777777777
Q ss_pred HHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 015590 220 VLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGL-LERMESEGIDADTVTFNILISGLRKQG 282 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g 282 (404)
.|+...+.. +.+..+|..+...|.+.|+.++|... +++..+..+. +...|......+...|
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 777766654 44566677777777777776655444 3555554222 4455555544444444
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=2.9e-08 Score=79.02 Aligned_cols=161 Identities=16% Similarity=-0.011 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHH-
Q 015590 94 YTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNL- 172 (404)
Q Consensus 94 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~- 172 (404)
+......+...|++++|...++...... |.+...+..+...+...|++++|+..|++..... |+...+......
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 3344555666666666666666654433 2333333333333333677777777776665533 333222221111
Q ss_pred HHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCC-cHHHHHHHHHHHHHcCCHHH
Q 015590 173 LVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEP-NVRTYSTLMHGLCEKGNVEE 251 (404)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~ 251 (404)
+...+...++...++...+.. |.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 111122233556666665553 3345666666666666666666666666666553111 23456666666666666666
Q ss_pred HHHHHHHHH
Q 015590 252 AFGLLERME 260 (404)
Q Consensus 252 A~~~~~~m~ 260 (404)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666543
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=7.4e-08 Score=80.05 Aligned_cols=57 Identities=11% Similarity=0.118 Sum_probs=32.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 274 LISGLRKQGKVEEGMKLLERMKGKGCYPN----SASYQEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 274 li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
+...|.+.|++++|...|+++.+. .|+ ...+..+..++.+.|+.++|.+.++.+...
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 344555566666666666666554 222 134555566666666666666666665554
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.96 E-value=4.7e-08 Score=80.46 Aligned_cols=163 Identities=13% Similarity=0.001 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC----ChHHHHHHHHHchhCCCCCcHHHHH
Q 015590 162 SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENG----NLEAAFYVLDEFPKQNCEPNVRTYS 237 (404)
Q Consensus 162 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (404)
++..+..+...+...+++++|...|+...+.| +...+..|...|.. + ++++|..+|+...+.| +..++.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34444445555555555555555555555443 33444444444444 3 5555555555554433 334444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc----CCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 015590 238 TLMHGLCE----KGNVEEAFGLLERMESEGID-ADTVTFNILISGLRK----QGKVEEGMKLLERMKGKGCYPNSASYQE 308 (404)
Q Consensus 238 ~li~~~~~----~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 308 (404)
.+...|.. .+++++|+..|++..+.|.. .+...+..|...|.. .++.++|...|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 44444444 45555555555555544321 013444455555544 45555555555555544 113334444
Q ss_pred HHHHHHhc-C-----ChhHHHHHHHHHHHCC
Q 015590 309 VLYGLLDK-K-----RFPEAKELVGRMICER 333 (404)
Q Consensus 309 li~~~~~~-g-----~~~~a~~~~~~~~~~~ 333 (404)
|...|... | +.++|.+.|+...+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44444332 2 5555666655555544
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=5.6e-07 Score=77.83 Aligned_cols=152 Identities=9% Similarity=-0.014 Sum_probs=75.9
Q ss_pred CcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH--HHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC------
Q 015590 177 KLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLE--AAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN------ 248 (404)
Q Consensus 177 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------ 248 (404)
+++++++++++.+.+.. +-+..+|+.-.-...+.|.++ ++++.++.+.+.+ +.|..+|+.-...+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 34445555555555443 334444544444444445444 5555555555443 3444455444444444443
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHH
Q 015590 249 VEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEE-GMKLLERMKGKG--CYPNSASYQEVLYGLLDKKRFPEAKEL 325 (404)
Q Consensus 249 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~ 325 (404)
++++++.++++....+. |...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+.+.+.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55556665555554433 55555555555555554322 333444433321 122445566666666666666666666
Q ss_pred HHHHHH
Q 015590 326 VGRMIC 331 (404)
Q Consensus 326 ~~~~~~ 331 (404)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=9.4e-08 Score=79.41 Aligned_cols=199 Identities=9% Similarity=-0.012 Sum_probs=97.3
Q ss_pred HHHHhcCCChhHHHHHHHHHhhCCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCCh-HHHHHHHHHHHh
Q 015590 62 LKIFSNLRDPISVISVLNQYSKRKDYNPN-EALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSD-GFFYNVIKIYGN 139 (404)
Q Consensus 62 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 139 (404)
...+.+.|++++|+..|+++++..+..|. ...+..+..++.+.|++++|...|+.+.......+.. ..++.+...+..
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence 34455566666666666666554322221 2455556666666666666666666655443111110 012222222222
Q ss_pred hcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 015590 140 MAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 140 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 219 (404)
.|.. .+ ..|..+...+...|++++|...|+.+.+.. |-+...+........
T Consensus 91 -~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~---------- 141 (225)
T 2yhc_A 91 -LDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVF---------- 141 (225)
T ss_dssp -HHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHH----------
T ss_pred -hhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHH----------
Confidence 1100 00 011122222334567777777777777653 222222222111000
Q ss_pred HHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 220 VLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDAD--TVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
+...+ ......+...|.+.|++++|+..|+++.+...... ...+..+..+|.+.|+.++|.+.++.+...
T Consensus 142 ~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 142 LKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 00000 01123455667778888888888888776532211 245677778888888888888888877776
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=8.9e-09 Score=79.69 Aligned_cols=142 Identities=9% Similarity=-0.100 Sum_probs=78.9
Q ss_pred HHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 015590 207 GLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEE 286 (404)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 286 (404)
++...|++++|...++...... +.+...+-.+...|.+.|++++|+..|++..+.... +..+|..+...|...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence 3344456666666666555432 223344555666666666666666666666655332 45566666666666666666
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 015590 287 GMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKEL-VGRMICERMSPSFVSYKKLIHGLCNQK 352 (404)
Q Consensus 287 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~li~~~~~~g 352 (404)
|...|++..+... -+...|..+...|.+.|+.++|.+. +++..+.. +-+...|......+...|
T Consensus 84 A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 6666666665521 1345666666666666666655443 35555431 224455554445555544
No 112
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.93 E-value=3.3e-06 Score=78.68 Aligned_cols=308 Identities=10% Similarity=-0.041 Sum_probs=169.0
Q ss_pred CChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHhcccCCCChHHHHHHHHHHHh----hcCC
Q 015590 69 RDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKR-FDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGN----MAGR 143 (404)
Q Consensus 69 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~ 143 (404)
|+++.+..+|++.+.. .|+...|..-+....+.++ .+....+|+.....-+..+.+..+|..-..+.. ..++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 6788888888888653 4688888777777666653 355666777665432122334455555555533 1356
Q ss_pred HHHHHHHHhhcccCCCCccHHHHH------------------------------------------------HHHHHHHh
Q 015590 144 ISKAIETLFDMPSYNCWPSVKTFN------------------------------------------------LVLNLLVS 175 (404)
Q Consensus 144 ~~~A~~~~~~m~~~~~~p~~~~~~------------------------------------------------~ll~~~~~ 175 (404)
.+.+..+|++........-...|. ..+..-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 777788887776531110011222 11111111
Q ss_pred c--C--c---HhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC
Q 015590 176 A--K--L---YGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN 248 (404)
Q Consensus 176 ~--~--~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 248 (404)
. + + .+.+..+|+++.... +.+...|...+..+.+.|+++.|..++++.... +.+...|.. |....+
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e 257 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMD 257 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcc
Confidence 0 0 0 223455666655542 445666666667777777777777777777665 333333322 222211
Q ss_pred HHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-
Q 015590 249 VEEAFGLLERMESEG---------IDA---DTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLD- 315 (404)
Q Consensus 249 ~~~A~~~~~~m~~~~---------~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~- 315 (404)
.++. ++.+.+.- ..+ ....|...+..+.+.++.+.|..+|++. ... ..+...|......-..
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH
Confidence 1111 22222110 000 1234555666666677889999999988 321 2234444432222222
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCCcchhhH
Q 015590 316 KKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDNRNRVYV 395 (404)
Q Consensus 316 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 395 (404)
.++.+.|.++|+...+. .+-+...+...++...+.|+.+.|+.+|+.+. .....|...+.-=...|+.+.+..+
T Consensus 333 ~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFREL 406 (493)
T ss_dssp HCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 23689999999988775 22345556667777778899999998888862 2455666666544455666666654
Q ss_pred HH
Q 015590 396 TE 397 (404)
Q Consensus 396 ~~ 397 (404)
++
T Consensus 407 ~~ 408 (493)
T 2uy1_A 407 VD 408 (493)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=3.9e-08 Score=93.88 Aligned_cols=154 Identities=10% Similarity=-0.036 Sum_probs=119.8
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
.|++++|++.|++..+.. +.+...|..+...+.+.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 588999999999988754 2346789999999999999999999999999875 55788999999999999999999999
Q ss_pred HHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHhhC
Q 015590 221 LDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQ---GKVEEGMKLLERMKGK 297 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 297 (404)
+++..+.. +.+...|..+...|.+.|++++|...|++..+.... +...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988775 567889999999999999999999999999877433 577888899999999 9999999999999887
Q ss_pred C
Q 015590 298 G 298 (404)
Q Consensus 298 ~ 298 (404)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=3.6e-08 Score=86.18 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHchhC----CCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----C-CH
Q 015590 200 CLNILLKGLCENGNLEAAFYVLDEFPKQ----NCEPN--VRTYSTLMHGLCEKGNVEEAFGLLERMESEGID----A-DT 268 (404)
Q Consensus 200 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~----p-~~ 268 (404)
+|+.+...|.+.|++++|...|++..+. | .+. ..+++.+...|.. |++++|+..|++..+.... + ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 3444444444445555444444443221 1 111 2344445555555 5555555555554322000 0 02
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015590 269 VTFNILISGLRKQGKVEEGMKLLERMKGK----GCYPN-SASYQEVLYGLLDKKRFPEAKELVGRMI 330 (404)
Q Consensus 269 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (404)
.++..+...|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|...|++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34555555556666666666666555432 11111 1234444445555566666666666655
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=4.1e-07 Score=74.56 Aligned_cols=126 Identities=13% Similarity=-0.017 Sum_probs=101.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 015590 131 YNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCE 210 (404)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 210 (404)
++....+.. .|++++|+..|++.. .|+...|..+...+.+.|++++|...++...+.. +.+...+..+..+|..
T Consensus 10 ~~~g~~~~~-~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAAD-KKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 344444454 899999999998885 3677888889999999999999999999988875 5677888888999999
Q ss_pred cCChHHHHHHHHHchhCCCCCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 015590 211 NGNLEAAFYVLDEFPKQNCEPN----------------VRTYSTLMHGLCEKGNVEEAFGLLERMESEG 263 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 263 (404)
.|++++|...|+...+.. +.+ ...+..+...|.+.|++++|...|++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999998887653 222 2677888888888999999999998887764
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=3.9e-07 Score=74.68 Aligned_cols=129 Identities=7% Similarity=-0.124 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
..+..+...+...|++++|...|++.. +|+..++..+...|.+.|++++|...|+...+.. +.+...|..+...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345566777778888888888887763 5677888888888888888888888888877665 55677888888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 244 CEKGNVEEAFGLLERMESEGID--------------A-DTVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
...|++++|...|++..+.... | ....+..+...|.+.|++++|...|++..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888888888775322 1 1256777778888888888888888888776
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.81 E-value=4.7e-07 Score=76.66 Aligned_cols=191 Identities=12% Similarity=-0.053 Sum_probs=126.3
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCCHHHHHHH-------HHHHHhcCCchHHHHHHHHHHhccc----------C------
Q 015590 67 NLRDPISVISVLNQYSKRKDYNPNEALYTLI-------INKLAQAKRFDAIEDIMQRIKVEKL----------C------ 123 (404)
Q Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~----------~------ 123 (404)
..+++..|.+.|.++.+.. +-....|..+ ...+.+.++..++...+..-..... .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999998754 4456677766 4555555555555555544332100 0
Q ss_pred --CCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC--Hh
Q 015590 124 --RFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEID--AC 199 (404)
Q Consensus 124 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~ 199 (404)
..+...+...........|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 00111222223333334899999999999988765 654455566667888899999999887554432 121 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHchhCCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 200 CLNILLKGLCENGNLEAAFYVLDEFPKQNCEP--NVRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 200 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
.+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67778888888899999998888886443214 3345666777788888888888888888876
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=1.6e-07 Score=82.09 Aligned_cols=198 Identities=12% Similarity=0.066 Sum_probs=142.9
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHh-cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVS-AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 219 (404)
.|++++|.+++++..+.. +. . +.+ .++++.|...|... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~--~-------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT--S-------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC--C-------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc--c-------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 577888888888765421 11 0 112 46777777777654 456778899999998
Q ss_pred HHHHchhC----CCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHcCCCHHHHHH
Q 015590 220 VLDEFPKQ----NCEP-NVRTYSTLMHGLCEKGNVEEAFGLLERMESEG---IDAD--TVTFNILISGLRKQGKVEEGMK 289 (404)
Q Consensus 220 ~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~p~--~~~~~~li~~~~~~g~~~~a~~ 289 (404)
.|.+..+. +-++ -..+|+.+...|.+.|++++|+..|++..+.- -.+. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88876542 2111 14578888999999999999999999875431 1111 3577888888988 99999999
Q ss_pred HHHHHhhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHcCCChHHHHH
Q 015590 290 LLERMKGK----GCYP-NSASYQEVLYGLLDKKRFPEAKELVGRMICE----RMSPS-FVSYKKLIHGLCNQKLVEDVDW 359 (404)
Q Consensus 290 ~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~ 359 (404)
.|++..+. +..+ ...++..+...+.+.|++++|++.|++..+. +..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987654 1111 1467888899999999999999999998763 11111 2356667778888899999999
Q ss_pred HHHHHH
Q 015590 360 VLKKMV 365 (404)
Q Consensus 360 ~~~~m~ 365 (404)
.|++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999988
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.76 E-value=4.2e-07 Score=71.04 Aligned_cols=127 Identities=14% Similarity=0.015 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHH
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLC 244 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 244 (404)
.|..+...+...|++++|...++...+.. +.+..++..+...+...|++++|...++...+.. +.+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44455555555666666666666555543 3345555555555666666666666665555443 334455555555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHH
Q 015590 245 EKGNVEEAFGLLERMESEGIDADTVTFN--ILISGLRKQGKVEEGMKLLERM 294 (404)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m 294 (404)
..|++++|...|++..+.... +...+. .....+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666555544221 222222 2222244445555555555443
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.76 E-value=4.2e-07 Score=67.00 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
..|..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+.+.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 445555555566666666666666655543 3344555555555666666666666665555443 33445555555555
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 015590 244 CEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~ 262 (404)
...|++++|...|+++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5556666666555555443
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.75 E-value=7.5e-06 Score=71.64 Aligned_cols=140 Identities=8% Similarity=-0.070 Sum_probs=66.3
Q ss_pred HhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcC-CHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhc-C-c
Q 015590 102 AQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAG-RISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSA-K-L 178 (404)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~-~ 178 (404)
.+.+..++|.++++.+.... |.....|+.-.......| .+++++++++.+.... +-+..+|+.-...+.+. + +
T Consensus 65 ~~~e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HhCCCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 33344456666666665544 444444444333333344 3666666666665543 12334555544444444 4 4
Q ss_pred HhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH--------HHHHHHHHchhCCCCCcHHHHHHHHHHHHHcC
Q 015590 179 YGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLE--------AAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKG 247 (404)
Q Consensus 179 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 247 (404)
+++++++++.+.+.. +-+..+|+.-.-...+.|.++ ++++.++++.+.. +.|..+|+.....+.+.+
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 555555555555443 334445544444444333333 4444444444433 334444444444444433
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=4.6e-06 Score=72.14 Aligned_cols=163 Identities=13% Similarity=0.071 Sum_probs=114.7
Q ss_pred HHHHHHhcCChHHHHHHHHHchhCC-CCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 015590 204 LLKGLCENGNLEAAFYVLDEFPKQN-CEPNV----RTYSTLMHGLCEKGNVEEAFGLLERMESEGID-AD----TVTFNI 273 (404)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 273 (404)
.+..+...|++++|...+++..+.. ..|+. ..+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4667788888888888888876532 12221 12334666666777888898888888774322 22 236788
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhC-----CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHH
Q 015590 274 LISGLRKQGKVEEGMKLLERMKGK-----GCYPN-SASYQEVLYGLLDKKRFPEAKELVGRMICE----RMSPS-FVSYK 342 (404)
Q Consensus 274 li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~ 342 (404)
+...|...|++++|...|++..+. +..+. ..++..+...|.+.|++++|.+.+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888899999998888887741 11122 246788888899999999999998887643 22232 56788
Q ss_pred HHHHHHHcCCC-hHHHHHHHHHHHH
Q 015590 343 KLIHGLCNQKL-VEDVDWVLKKMVQ 366 (404)
Q Consensus 343 ~li~~~~~~g~-~~~a~~~~~~m~~ 366 (404)
.+..+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888999994 6899988888764
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=4e-07 Score=67.88 Aligned_cols=97 Identities=13% Similarity=-0.027 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
..+......+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|...|+...+.+ +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 356666777777777777777777776664 4566677777777777777777777777766654 45566677777777
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 015590 244 CEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~ 262 (404)
...|++++|...|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777776665
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=1.5e-07 Score=81.07 Aligned_cols=194 Identities=14% Similarity=0.022 Sum_probs=128.4
Q ss_pred cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHH
Q 015590 162 SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMH 241 (404)
Q Consensus 162 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 241 (404)
+...+..+...+.+.|++++|...|+...+.. +.+...+..+..+|.+.|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677788888899999999999999988874 4578888889999999999999999999988775 567788888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 015590 242 GLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPE 321 (404)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 321 (404)
+|...|++++|...|++..+.... +...+...+....+ ..++.. +..........+......+ ..+ ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYL-TRL-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHH
Confidence 999999999999999887654211 10111111111111 111111 1222223333344443333 222 3688889
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHcC-CChHHHHHHHHHHHH
Q 015590 322 AKELVGRMICERMSPSFV-SYKKLIHGLCNQ-KLVEDVDWVLKKMVQ 366 (404)
Q Consensus 322 a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~-g~~~~a~~~~~~m~~ 366 (404)
|++.++...+. .|+.. ....+-..+.+. +.+++|.++|.+..+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 98888887764 45543 333443444444 668889999987765
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.70 E-value=9.3e-06 Score=71.05 Aligned_cols=178 Identities=8% Similarity=-0.013 Sum_probs=126.0
Q ss_pred HHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhc
Q 015590 63 KIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAK-RFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMA 141 (404)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (404)
......+..++|+.+++.++... +-+..+|+.--..+...+ +++++.++++.+.... |.+...|+--.......
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n---PKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN---LKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHh
Confidence 34444556678999999998754 445667888877888888 5999999999987655 55555555443333333
Q ss_pred -C-CHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHh--------HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 015590 142 -G-RISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYG--------EIQGIYTSAAKLGVEIDACCLNILLKGLCEN 211 (404)
Q Consensus 142 -g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 211 (404)
+ ++++++++++++.+.+ +.|..+|+.-.-.+.+.+.++ ++++.++.+.+.. +-|...|+.....+.+.
T Consensus 137 ~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred cCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 5 8899999999998865 346678877666666666666 8899999998876 56888888888888777
Q ss_pred CC-------hHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC
Q 015590 212 GN-------LEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN 248 (404)
Q Consensus 212 g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 248 (404)
+. ++++++.+++..... +-|...|+-+-..+.+.|+
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 76 566666666666554 5566666665555555544
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=2.5e-07 Score=73.50 Aligned_cols=120 Identities=8% Similarity=0.060 Sum_probs=63.1
Q ss_pred hcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHH-HHHcCCH--HH
Q 015590 175 SAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG-LCEKGNV--EE 251 (404)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~--~~ 251 (404)
..|++++|...++...+.. +.+...+..+...|...|++++|...|+...+.. +.+...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555555443 3445555555566666666666666665555443 3344455555555 5555555 66
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 252 AFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 252 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
|...|++..+.... +...+..+...|...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666655554322 3445555555566666666666666665554
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.68 E-value=8.8e-07 Score=69.17 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015590 201 LNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRK 280 (404)
Q Consensus 201 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 280 (404)
+..+...+...|++++|...|+...+.. +.+..+|..+...+...|++++|...|++..+.... +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 3444444455555555555555444432 233444444444555555555555555444433211 33344444444444
Q ss_pred CCCHHHHHHHHHHHhh
Q 015590 281 QGKVEEGMKLLERMKG 296 (404)
Q Consensus 281 ~g~~~~a~~~~~~m~~ 296 (404)
.|++++|...|++..+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444443
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=4.9e-07 Score=67.28 Aligned_cols=116 Identities=13% Similarity=0.041 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 345555555555556666666555555443 3344555555555555555555555555554432 33344555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 015590 244 CEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQG 282 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 282 (404)
...|++++|...|++..+.... +...+..+...+...|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 5555555555555555443221 3334444444444333
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=2.1e-06 Score=72.64 Aligned_cols=193 Identities=9% Similarity=-0.038 Sum_probs=128.4
Q ss_pred cCCHHHHHHHHhhcccCCCCcc-HHHHHHH-------HHHHHhcCcHhHHHHHHHHHHHcCCCCC---------------
Q 015590 141 AGRISKAIETLFDMPSYNCWPS-VKTFNLV-------LNLLVSAKLYGEIQGIYTSAAKLGVEID--------------- 197 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~g~~~~--------------- 197 (404)
.++.+.|.+.|.+..... |+ ...|..+ ...+.+.++..+++..+....+ +.|+
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 788888888888887754 43 4577766 4555555555555555554443 2221
Q ss_pred -------HhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--H
Q 015590 198 -------ACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDAD--T 268 (404)
Q Consensus 198 -------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~ 268 (404)
....-.+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233446677788899999999998887654 443355666667888899999998887554321 111 2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 015590 269 VTFNILISGLRKQGKVEEGMKLLERMKGKGCYPN--SASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYK 342 (404)
Q Consensus 269 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 342 (404)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++... .|+...+.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~ 245 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHH
Confidence 3566777888888888888888888875432243 235556666778888888888888888875 45533333
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.66 E-value=6.2e-07 Score=67.08 Aligned_cols=98 Identities=13% Similarity=0.013 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHH
Q 015590 163 VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG 242 (404)
Q Consensus 163 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 242 (404)
...|..+...+...|++++|...++...+.. +.+..++..+...|...|++++|...+++..+.. +.+...|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3455555555555666666666665555443 3344555555555555555555555555555443 3344555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 015590 243 LCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~ 262 (404)
+.+.|++++|...|++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 55555555555555555443
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.66 E-value=1.2e-06 Score=64.53 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015590 199 CCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGL 278 (404)
Q Consensus 199 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 278 (404)
..+..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 344444555555555555555555544432 23344444555555555555555555555444321 1334444444444
Q ss_pred HcCCCHHHHHHHHHHHhh
Q 015590 279 RKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 279 ~~~g~~~~a~~~~~~m~~ 296 (404)
...|++++|...|+++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 444555555544444443
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=3.3e-07 Score=74.33 Aligned_cols=23 Identities=17% Similarity=-0.031 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 015590 307 QEVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 307 ~~li~~~~~~g~~~~a~~~~~~~ 329 (404)
..+...+...|++++|.+.+++.
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444444455555555444443
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=3.8e-06 Score=72.66 Aligned_cols=164 Identities=13% Similarity=0.037 Sum_probs=94.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHchhCCCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CC--HHHH
Q 015590 202 NILLKGLCENGNLEAAFYVLDEFPKQNCEPN-----VRTYSTLMHGLCEKGNVEEAFGLLERMESEGID---AD--TVTF 271 (404)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~---p~--~~~~ 271 (404)
...+..+...|++++|.+.+....+.....+ ...+..+...+...|++++|+..|++..+.... +. ..+|
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3345555666666666666655544321111 112233444555666777777777666542111 11 3366
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhC-CCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHH
Q 015590 272 NILISGLRKQGKVEEGMKLLERMKGK-GCYPN-----SASYQEVLYGLLDKKRFPEAKELVGRMICE----RMSP-SFVS 340 (404)
Q Consensus 272 ~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~ 340 (404)
+.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|++.+++..+. +... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 66777777777777777777766521 00111 146677777777778888888777776542 1111 1456
Q ss_pred HHHHHHHHHcCCChHHH-HHHHHHHH
Q 015590 341 YKKLIHGLCNQKLVEDV-DWVLKKMV 365 (404)
Q Consensus 341 ~~~li~~~~~~g~~~~a-~~~~~~m~ 365 (404)
|..+..+|...|++++| ...+++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 77777778888888888 66666654
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=1.5e-06 Score=75.31 Aligned_cols=161 Identities=14% Similarity=0.053 Sum_probs=95.7
Q ss_pred HHHHHhhcCCHHHHHHHHhhcccCC-CCccHH----HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCC-CC----HhHHHH
Q 015590 134 IKIYGNMAGRISKAIETLFDMPSYN-CWPSVK----TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVE-ID----ACCLNI 203 (404)
Q Consensus 134 l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~ 203 (404)
+..+.. .|++++|..++++..+.. ..|+.. .+..+...+...+++++|...++...+.... ++ ..+++.
T Consensus 82 i~~~~~-~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCK-QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHH-HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 444444 778888888887765522 112211 2333555566667788888888877764322 22 225777
Q ss_pred HHHHHHhcCChHHHHHHHHHchh----C-CCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 015590 204 LLKGLCENGNLEAAFYVLDEFPK----Q-NCEPN-VRTYSTLMHGLCEKGNVEEAFGLLERMESE----GIDAD-TVTFN 272 (404)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~~~~----~-~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~ 272 (404)
+...|...|++++|...|++..+ . +..+. ..+|..+...|.+.|++++|+..+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777887777777777653 1 11122 235666777777777777777777765432 11111 45566
Q ss_pred HHHHHHHcCCC-HHHHHHHHHHHh
Q 015590 273 ILISGLRKQGK-VEEGMKLLERMK 295 (404)
Q Consensus 273 ~li~~~~~~g~-~~~a~~~~~~m~ 295 (404)
.+...|.+.|+ .++|...|++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66666666773 466666666554
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=3.3e-07 Score=74.35 Aligned_cols=158 Identities=11% Similarity=-0.009 Sum_probs=102.2
Q ss_pred HhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHcCCC
Q 015590 209 CENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE----GIDA-DTVTFNILISGLRKQGK 283 (404)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~ 283 (404)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3457777777744333321 1234566777777777777877777777776541 1111 23456677777888888
Q ss_pred HHHHHHHHHHHhhC----CCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHcCC
Q 015590 284 VEEGMKLLERMKGK----GCYP--NSASYQEVLYGLLDKKRFPEAKELVGRMICER-MSPS----FVSYKKLIHGLCNQK 352 (404)
Q Consensus 284 ~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~----~~~~~~li~~~~~~g 352 (404)
+++|...+++..+. +-.| ....+..+...+...|++++|.+.+++..+.. -..+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888776543 1111 13456777788888899999999988876431 0112 234577788899999
Q ss_pred ChHHHHHHHHHHHHC
Q 015590 353 LVEDVDWVLKKMVQQ 367 (404)
Q Consensus 353 ~~~~a~~~~~~m~~~ 367 (404)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987754
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=3e-06 Score=73.31 Aligned_cols=165 Identities=12% Similarity=0.038 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHHchhCCC---CCc--HHH
Q 015590 166 FNLVLNLLVSAKLYGEIQGIYTSAAKLGVEID-----ACCLNILLKGLCENGNLEAAFYVLDEFPKQNC---EPN--VRT 235 (404)
Q Consensus 166 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~~ 235 (404)
+...+..+...|++++|.+.+....+.....+ ...+..+...+...|++++|...+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33344555566666666666655554321110 01233344556666777777777766553211 111 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HC-CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CCCC-Chh
Q 015590 236 YSTLMHGLCEKGNVEEAFGLLERME---SE-GIDA--DTVTFNILISGLRKQGKVEEGMKLLERMKGK----GCYP-NSA 304 (404)
Q Consensus 236 ~~~li~~~~~~~~~~~A~~~~~~m~---~~-~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~ 304 (404)
|+.+...|...|++++|+..|++.. +. +..+ ...++..+...|...|++++|...+++..+. +... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 7777777888888888888887765 22 1111 1246777778888888888888888776543 1111 146
Q ss_pred hHHHHHHHHHhcCChhHH-HHHHHHHH
Q 015590 305 SYQEVLYGLLDKKRFPEA-KELVGRMI 330 (404)
Q Consensus 305 ~~~~li~~~~~~g~~~~a-~~~~~~~~ 330 (404)
+|..+...|.+.|+.++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 677888888888888888 67677654
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=4.7e-07 Score=69.80 Aligned_cols=97 Identities=5% Similarity=-0.181 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
..+..+...+.+.|++++|+..|+...+.. |.+...|..+..+|...|++++|...|++..+.. |.+...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 456666777777777777777777777664 4566677777777777777777777777776654 44566777777777
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 015590 244 CEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~ 262 (404)
.+.|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777665
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=2.6e-07 Score=79.61 Aligned_cols=194 Identities=12% Similarity=0.020 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHH-HHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHH
Q 015590 90 NEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFY-NVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNL 168 (404)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 168 (404)
+...+..+...+.+.|++++|...++...... |.+...+ ++...+.. .|++++|+..+++..+.. +.+...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~-p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLK-MQQPEQALADCRRALELD-GQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 45566667777777788888888887776543 3333333 33344443 778888888887777654 234557777
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC
Q 015590 169 VLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN 248 (404)
Q Consensus 169 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 248 (404)
+..++...|++++|...|+...+.. +.+...+...+....+.. ++... ........+.+......+.. + ..|+
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~i~~~l~~-l-~~~~ 150 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIA---KKKRW-NSIEERRIHQESELHSYLTR-L-IAAE 150 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHH---HHHHH-HHHHHTCCCCCCHHHHHHHH-H-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHH---HHHHH-HHHHHHHHhhhHHHHHHHHH-H-HHHH
Confidence 7777788888888888887776542 111111111111111111 11111 11111222333333333322 2 2567
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcC-CCHHHHHHHHHHHhhC
Q 015590 249 VEEAFGLLERMESEGIDADTVT-FNILISGLRKQ-GKVEEGMKLLERMKGK 297 (404)
Q Consensus 249 ~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~-g~~~~a~~~~~~m~~~ 297 (404)
.++|++.++...+. .|+... ...+-..+.+. +.+++|.++|....+.
T Consensus 151 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 151 RERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 77777777666554 333322 22333333333 5567777777766553
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.61 E-value=1.6e-06 Score=66.80 Aligned_cols=96 Identities=13% Similarity=-0.056 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015590 200 CLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLR 279 (404)
Q Consensus 200 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 279 (404)
.+..+...+.+.|++++|...|+...+.. |.+...|..+..+|...|++++|+..|++..+.... +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 44445555555555555555555555443 344555555555555555555555555555444322 3444555555555
Q ss_pred cCCCHHHHHHHHHHHhhC
Q 015590 280 KQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 280 ~~g~~~~a~~~~~~m~~~ 297 (404)
..|++++|...|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555544
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=1.1e-06 Score=65.38 Aligned_cols=117 Identities=14% Similarity=0.013 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 015590 234 RTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGL 313 (404)
Q Consensus 234 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 313 (404)
..+..+...+...|++++|...|++....... +...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 34444444455555555555555554433211 33444444555555555555555555544432 11234445555555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 015590 314 LDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKL 353 (404)
Q Consensus 314 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 353 (404)
...|++++|.+.+++..+.. +.+...+..+..++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 55555555555555554431 2234444444444444443
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.59 E-value=4.9e-07 Score=69.56 Aligned_cols=91 Identities=13% Similarity=-0.014 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc
Q 015590 167 NLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK 246 (404)
Q Consensus 167 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 246 (404)
..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|...|+...+.. +.+...|..+..+|...
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 333334444444444444444443332 2233333444444444444444444444433332 22333333344444444
Q ss_pred CCHHHHHHHHHHH
Q 015590 247 GNVEEAFGLLERM 259 (404)
Q Consensus 247 ~~~~~A~~~~~~m 259 (404)
|++++|...|++.
T Consensus 103 g~~~~A~~~~~~a 115 (148)
T 2vgx_A 103 GELAEAESGLFLA 115 (148)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444433
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=3.1e-07 Score=72.94 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=82.2
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHhcCCh--HHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKG-LCENGNL--EAA 217 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~--~~a 217 (404)
.|++++|...|++..+.. +.+...|..+...+...|++++|...|+...+.. +.+...+..+..+ |...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 566777777776665533 2345677777777777788888888877777664 4456666777777 6677777 888
Q ss_pred HHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 015590 218 FYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEG 263 (404)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 263 (404)
...|+...+.. +.+...+..+...|...|++++|...|++..+..
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88887777654 4456677777777888888888888888777653
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=1.4e-06 Score=65.03 Aligned_cols=97 Identities=12% Similarity=0.029 Sum_probs=44.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015590 198 ACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISG 277 (404)
Q Consensus 198 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 277 (404)
...+..+...+...|++++|...|++..+.. +.+...|..+...|...|++++|...|++..+.... +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 3344444445555555555555555544432 233444444444444555555555555444443211 33344444444
Q ss_pred HHcCCCHHHHHHHHHHHhh
Q 015590 278 LRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 278 ~~~~g~~~~a~~~~~~m~~ 296 (404)
+...|++++|...|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4444444444444444443
No 144
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.59 E-value=2.3e-05 Score=73.00 Aligned_cols=227 Identities=9% Similarity=-0.038 Sum_probs=148.8
Q ss_pred HHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH-HHHHHH
Q 015590 145 SKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAA-FYVLDE 223 (404)
Q Consensus 145 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~ 223 (404)
+.+..+|++..... +.+...|...+..+.+.|+.+.|..+|++.... |.+...+. .|+...+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHH
Confidence 45667777776632 345667888888888999999999999999988 44443333 23332222222 112221
Q ss_pred chhCC-----C---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Q 015590 224 FPKQN-----C---EPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRK-QGKVEEGMKLLERM 294 (404)
Q Consensus 224 ~~~~~-----~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m 294 (404)
..... . ......|...+....+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 11000 0 112356777788887888999999999999 32 12344455432222222 23699999999998
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC--C---C
Q 015590 295 KGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQ--G---F 369 (404)
Q Consensus 295 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~---~ 369 (404)
.+.- .-++..|...++...+.|+.+.|..+|+.+. .....|...++--...|+.+.+..++++..+. + -
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~ 420 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAIL 420 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCB
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccC
Confidence 8762 1134556777887788999999999999983 35778888888778889999999999887742 1 1
Q ss_pred CCC------------HHhHHHHHHhhccC
Q 015590 370 VPR------------MGMWREIVGCVTFG 386 (404)
Q Consensus 370 ~p~------------~~~~~~ll~~~~~~ 386 (404)
.|- ..++..++..|...
T Consensus 421 ~~~~~~~~~~~fe~~~g~l~~~~~~~~~~ 449 (493)
T 2uy1_A 421 PPLPPREHNVQMEGILGRYHCFLDSFNFL 449 (493)
T ss_dssp CCCCCC--CCCCCHHHHHHHHHHHHHCBT
T ss_pred CcccccccHHHHHHHhhhHHHHHHHhhhh
Confidence 111 25788888888543
No 145
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.58 E-value=1.6e-06 Score=64.56 Aligned_cols=94 Identities=12% Similarity=-0.012 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015590 201 LNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRK 280 (404)
Q Consensus 201 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 280 (404)
+......|.+.|++++|...|++..+.. +.+..+|..+..+|.+.|++++|+..|++..+.... +...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 3444444555555555555555444433 334444444445555555555555555444443221 33344444444444
Q ss_pred CCCHHHHHHHHHHHhh
Q 015590 281 QGKVEEGMKLLERMKG 296 (404)
Q Consensus 281 ~g~~~~a~~~~~~m~~ 296 (404)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444444
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.56 E-value=1.8e-06 Score=76.41 Aligned_cols=149 Identities=11% Similarity=-0.073 Sum_probs=89.0
Q ss_pred CCHHHHHHHHhhcccCCCCc-cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC--------------HhHHHHHHH
Q 015590 142 GRISKAIETLFDMPSYNCWP-SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEID--------------ACCLNILLK 206 (404)
Q Consensus 142 g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~li~ 206 (404)
+++++|.+.|+...+.. | +...|..+...+.+.|++++|...|++..+...... ..+|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34445555554443321 3 345677777788888888888888888777642111 356666666
Q ss_pred HHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 015590 207 GLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEE 286 (404)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 286 (404)
+|.+.|++++|...++...+.. +.+..+|..+..+|...|++++|...|++..+.... +...+..+...+.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666554 445566666666666666666666666666554322 44555556666666666665
Q ss_pred H-HHHHHHH
Q 015590 287 G-MKLLERM 294 (404)
Q Consensus 287 a-~~~~~~m 294 (404)
| ...|+.|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 5 3344444
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=1.4e-07 Score=83.50 Aligned_cols=148 Identities=11% Similarity=0.013 Sum_probs=114.8
Q ss_pred CCchHHHHHHHHHHhcccCCCChHHHH-HHHHHHHhhcCCHHHHHHHHhhcccCCCCcc----------------HHHHH
Q 015590 105 KRFDAIEDIMQRIKVEKLCRFSDGFFY-NVIKIYGNMAGRISKAIETLFDMPSYNCWPS----------------VKTFN 167 (404)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~ 167 (404)
+++++|...++...... +.....+ ++-..+.. .|++++|+..|++..+.. |+ ...|.
T Consensus 127 ~~~~~A~~~~~~a~~~~---p~~a~~~~~~g~~~~~-~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK---LEQSTIVKERGTVYFK-EGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEECCCCGGGCCHHHH---HHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH---HHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHH
Confidence 44555655555433222 2233333 34444444 899999999999987754 43 47899
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcC
Q 015590 168 LVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKG 247 (404)
Q Consensus 168 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 247 (404)
.+..++.+.|++++|+..++...+.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+...+.+.|
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999886 6678899999999999999999999999998875 567788999999999999
Q ss_pred CHHHH-HHHHHHHH
Q 015590 248 NVEEA-FGLLERME 260 (404)
Q Consensus 248 ~~~~A-~~~~~~m~ 260 (404)
+.++| ...|+.|.
T Consensus 279 ~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 279 RQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99988 44666664
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=4.9e-07 Score=69.57 Aligned_cols=99 Identities=15% Similarity=0.003 Sum_probs=66.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015590 197 DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILIS 276 (404)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 276 (404)
+...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|+..|++....... +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 44455666667777777777777777766554 456666777777777777777777777776655332 4556666677
Q ss_pred HHHcCCCHHHHHHHHHHHhhC
Q 015590 277 GLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 277 ~~~~~g~~~~a~~~~~~m~~~ 297 (404)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776654
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.53 E-value=5.4e-06 Score=60.17 Aligned_cols=95 Identities=16% Similarity=0.013 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHH
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLC 244 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 244 (404)
.+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44444444555555555555555554432 2334444444455555555555555555444432 223444444444455
Q ss_pred HcCCHHHHHHHHHHHHH
Q 015590 245 EKGNVEEAFGLLERMES 261 (404)
Q Consensus 245 ~~~~~~~A~~~~~~m~~ 261 (404)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555544443
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.52 E-value=3.1e-06 Score=62.85 Aligned_cols=97 Identities=13% Similarity=0.040 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
..|......+.+.|++++|+..|++..+.. +.+...+..+..+|.+.|++++|...|+...+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 455556666666666777776666666654 4455666666666666666666666666666554 44555666666666
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 015590 244 CEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~ 262 (404)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666666543
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.49 E-value=2.3e-06 Score=65.15 Aligned_cols=97 Identities=13% Similarity=-0.045 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|+...+.. +.+...|..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 345555666666777777777777666654 4456666666666777777777777776666554 44555666666666
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 015590 244 CEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~ 262 (404)
...|++++|...|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6677777777666666543
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=4.8e-06 Score=61.77 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015590 200 CLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLR 279 (404)
Q Consensus 200 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 279 (404)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.... +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 34444455555555555555555554443 334445555555555555555555555555443222 3344444455555
Q ss_pred cCCCHHHHHHHHHHHhh
Q 015590 280 KQGKVEEGMKLLERMKG 296 (404)
Q Consensus 280 ~~g~~~~a~~~~~~m~~ 296 (404)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555554443
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.46 E-value=2.2e-06 Score=61.73 Aligned_cols=95 Identities=19% Similarity=0.065 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCC--cHHHHHHHHHH
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEP--NVRTYSTLMHG 242 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~ 242 (404)
.|..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...|++..+.. +. +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33344444444444444444444444432 2233344444444444444444444444444332 22 23344444444
Q ss_pred HHHc-CCHHHHHHHHHHHHH
Q 015590 243 LCEK-GNVEEAFGLLERMES 261 (404)
Q Consensus 243 ~~~~-~~~~~A~~~~~~m~~ 261 (404)
+.+. |++++|.+.|++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 4444 444444444444433
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=5.7e-07 Score=72.93 Aligned_cols=155 Identities=10% Similarity=-0.060 Sum_probs=84.8
Q ss_pred HHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------HHHHH
Q 015590 208 LCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDAD---------------TVTFN 272 (404)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---------------~~~~~ 272 (404)
....|+++++.+.|+.-.+.. ......+..+...+.+.|++++|+..|++.......-. ...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 333455555554444322211 12334455566666667777777777776665422100 25666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 015590 273 ILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQK 352 (404)
Q Consensus 273 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 352 (404)
.+..+|...|++++|...+++..+.. +.+...+..+..++...|++++|.+.|++..+.. +-+...+..+..++...+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHH
Confidence 77777777788888888777777653 2355677777777778888888888887777642 335556666666666666
Q ss_pred ChHHHH-HHHHHHH
Q 015590 353 LVEDVD-WVLKKMV 365 (404)
Q Consensus 353 ~~~~a~-~~~~~m~ 365 (404)
+.+++. ..+..|.
T Consensus 171 ~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 171 EARKKDKLTFGGMF 184 (198)
T ss_dssp HHHC----------
T ss_pred HHHHHHHHHHHHHh
Confidence 665555 4444444
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.44 E-value=1.4e-06 Score=66.31 Aligned_cols=97 Identities=11% Similarity=-0.028 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015590 199 CCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGL 278 (404)
Q Consensus 199 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 278 (404)
..+..+...+.+.|++++|...|+.....+ +.+...|..+..+|.+.|++++|+..|++....... +...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 344445555666666666666666655543 445555666666666666666666666665554322 344555555666
Q ss_pred HcCCCHHHHHHHHHHHhhC
Q 015590 279 RKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 279 ~~~g~~~~a~~~~~~m~~~ 297 (404)
...|++++|...|+...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666655544
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.43 E-value=1.2e-05 Score=58.19 Aligned_cols=97 Identities=18% Similarity=0.077 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015590 199 CCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGL 278 (404)
Q Consensus 199 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 278 (404)
..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 344455555555666666666665555443 334555555555555556666666555555544221 344455555555
Q ss_pred HcCCCHHHHHHHHHHHhhC
Q 015590 279 RKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 279 ~~~g~~~~a~~~~~~m~~~ 297 (404)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555544
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.41 E-value=6.8e-05 Score=65.25 Aligned_cols=229 Identities=10% Similarity=0.048 Sum_probs=159.0
Q ss_pred cCCH-HHHHHHHhhcccCCCCcc-HHHHHHHHHHHHhcCc----------HhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 015590 141 AGRI-SKAIETLFDMPSYNCWPS-VKTFNLVLNLLVSAKL----------YGEIQGIYTSAAKLGVEIDACCLNILLKGL 208 (404)
Q Consensus 141 ~g~~-~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 208 (404)
.|.+ ++|+++++.+...+ |+ ..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-.-.+
T Consensus 42 ~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4555 48999999998865 54 4467765555444443 678888888888775 66888888888888
Q ss_pred HhcCC--hHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC----
Q 015590 209 CENGN--LEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN-VEEAFGLLERMESEGIDADTVTFNILISGLRKQ---- 281 (404)
Q Consensus 209 ~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---- 281 (404)
.+.|+ ++++..+++.+.+.. +.|..+|+.-...+...|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 88884 889999999998876 7788899888888888888 58999999999887665 777887766655544
Q ss_pred ----------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCH-H
Q 015590 282 ----------GKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDK-----------KRFPEAKELVGRMICERMSPSF-V 339 (404)
Q Consensus 282 ----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~p~~-~ 339 (404)
+.++++++.+....... +-|...|+-+-..+.+. +.++++++.++++.+. .||. -
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPENKW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Ccccch
Confidence 45778888888887763 22556666554444444 3467888888888875 4543 2
Q ss_pred HHHHHH---HHHHcCCChHHHHHHHHHHHHCCCCCCHH-hHHHH
Q 015590 340 SYKKLI---HGLCNQKLVEDVDWVLKKMVQQGFVPRMG-MWREI 379 (404)
Q Consensus 340 ~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l 379 (404)
.+.+++ .+....|..+++...+.++.+ +.|-.. -|.-+
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~ 315 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHH
Confidence 222222 122245677788888888873 445443 34443
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.41 E-value=7.7e-06 Score=61.49 Aligned_cols=98 Identities=18% Similarity=0.059 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHH
Q 015590 162 SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMH 241 (404)
Q Consensus 162 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 241 (404)
+...|..+...+...|++++|...|+...+.. +.+...+..+..+|...|++++|...++...+.+ +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34455555555566666666666666555543 3345555555555555666666665555555443 334455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 015590 242 GLCEKGNVEEAFGLLERMES 261 (404)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~ 261 (404)
.|...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555543
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.40 E-value=5.7e-06 Score=61.62 Aligned_cols=58 Identities=12% Similarity=0.009 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHc
Q 015590 166 FNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEF 224 (404)
Q Consensus 166 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 224 (404)
+..+...+.+.|++++|++.|++.++.. |.+...|..+..+|.+.|++++|...++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3344444444444444444444444332 223334444444444444444444444433
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=0.00021 Score=62.24 Aligned_cols=221 Identities=10% Similarity=-0.010 Sum_probs=144.0
Q ss_pred HhcCCch-HHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcC----------CHHHHHHHHhhcccCCCCccHHHHHHHH
Q 015590 102 AQAKRFD-AIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAG----------RISKAIETLFDMPSYNCWPSVKTFNLVL 170 (404)
Q Consensus 102 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~m~~~~~~p~~~~~~~ll 170 (404)
.+.|.++ +|.++.+.+.... |...+.|+.-.......+ .+++++.+++.+.... +-+..+|+.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3455554 6777777776544 445555543222222111 1567788888777654 23556777766
Q ss_pred HHHHhcC--cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC-hHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc-
Q 015590 171 NLLVSAK--LYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGN-LEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK- 246 (404)
Q Consensus 171 ~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 246 (404)
-.+.+.+ .+++++.+++.+.+.. +-|..+|+.-.-.....|. ++++.+.++.+.+.. +.|..+|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHS
T ss_pred HHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhh
Confidence 6666666 4788888888888775 5677788777777777777 578888888887766 66777787766665554
Q ss_pred -------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHhhCCCCCC
Q 015590 247 -------------GNVEEAFGLLERMESEGIDADTVTFNILISGLRKQ-----------GKVEEGMKLLERMKGKGCYPN 302 (404)
Q Consensus 247 -------------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~ 302 (404)
+.++++++.+.+.....+. |...|+-+-..+.+. +.++++++.++++.+. .||
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd 270 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPE 270 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTT
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Ccc
Confidence 4477888888888776544 677776554444444 4578888888888877 455
Q ss_pred hhhHHHHHHH-----HHhcCChhHHHHHHHHHHHC
Q 015590 303 SASYQEVLYG-----LLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 303 ~~~~~~li~~-----~~~~g~~~~a~~~~~~~~~~ 332 (404)
. .|..+-.+ ....|..+++...+.++.+-
T Consensus 271 ~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 271 N-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp C-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred c-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3 34322222 12346677888888888763
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.39 E-value=2.9e-06 Score=63.00 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCC--CCc----HHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNC--EPN----VRTYS 237 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 237 (404)
..|..+...+...|++++|...++...+.. +.+...+..+...|...|++++|...++...+... .++ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344555555555555666655555555543 33445555555555555555555555555443310 011 34445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 238 TLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 238 ~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
.+...|...|++++|...|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555555555555555555555443
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=9.1e-06 Score=63.47 Aligned_cols=99 Identities=14% Similarity=0.081 Sum_probs=73.9
Q ss_pred cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHH
Q 015590 162 SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMH 241 (404)
Q Consensus 162 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 241 (404)
+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...|+...+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44567777777778888888888888777764 4467777777778888888888888887777664 455677777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 015590 242 GLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~ 262 (404)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 788888888888888777654
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.38 E-value=6.4e-06 Score=66.62 Aligned_cols=120 Identities=17% Similarity=-0.005 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC----------------HhHHHHHHHHHHhcCChHHHHHHHHHchhC
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEID----------------ACCLNILLKGLCENGNLEAAFYVLDEFPKQ 227 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 227 (404)
..+..+...+...|++++|...|++..+.. +.+ ..++..+..+|.+.|++++|...++...+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345555566666666666666666666542 111 144555555555555555555555555444
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 015590 228 NCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEE 286 (404)
Q Consensus 228 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 286 (404)
. +.+...|..+..+|...|++++|...|++..+.... +...+..+...+...++.++
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 3 334455555555555555555555555555443221 33344444444444443333
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.37 E-value=6.2e-06 Score=59.25 Aligned_cols=99 Identities=14% Similarity=0.022 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 015590 198 ACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGID-ADTVTFNILIS 276 (404)
Q Consensus 198 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~ 276 (404)
...+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.... .+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3344455555555556666655555555443 334445555555555555555555555555544211 02444555555
Q ss_pred HHHcC-CCHHHHHHHHHHHhhC
Q 015590 277 GLRKQ-GKVEEGMKLLERMKGK 297 (404)
Q Consensus 277 ~~~~~-g~~~~a~~~~~~m~~~ 297 (404)
.+... |++++|.+.+++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55555 5555555555555544
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=3e-06 Score=62.90 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 015590 199 CCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGI--DAD----TVTFN 272 (404)
Q Consensus 199 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~~ 272 (404)
..+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...|++...... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344555556666666666666666655543 34455555666666666666666666665544321 111 33444
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 273 ILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 273 ~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
.+...+...|++++|...|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4555555555555555555555543
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.36 E-value=9.3e-06 Score=60.44 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 015590 200 CLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGI--DAD----TVTFNI 273 (404)
Q Consensus 200 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~~~ 273 (404)
.+..+...+.+.|++++|...|++..+.. |.+...|+.+..+|.+.|++++|+..|++..+... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44556666666666666666666665554 44556666666666666666666666666544311 111 124555
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHH
Q 015590 274 LISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQ 307 (404)
Q Consensus 274 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 307 (404)
+...+...|++++|.+.|++.... .||+.+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 666666666666666666666553 34444433
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.36 E-value=1.2e-05 Score=60.47 Aligned_cols=98 Identities=13% Similarity=-0.041 Sum_probs=51.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015590 197 DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILIS 276 (404)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 276 (404)
+...+..+...+...|++++|...|+...+.. +.+...|..+...+...|++++|...|++..+.... +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34455555555555555555555555554443 334455555555555555555555555555544322 3444555555
Q ss_pred HHHcCCCHHHHHHHHHHHhh
Q 015590 277 GLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 277 ~~~~~g~~~~a~~~~~~m~~ 296 (404)
.+...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555443
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=2.2e-05 Score=59.68 Aligned_cols=98 Identities=19% Similarity=0.095 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHH
Q 015590 162 SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEID----ACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYS 237 (404)
Q Consensus 162 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (404)
+...+..+...+...|++++|...|+...+.. |+ ...+..+...|...|++++|...++...+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34556666666666677777777776666542 33 4556666666666666666666666665543 33455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 238 TLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 238 ~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
.+...|...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666666666666666554
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.35 E-value=8.9e-06 Score=63.52 Aligned_cols=99 Identities=10% Similarity=-0.072 Sum_probs=75.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015590 197 DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILIS 276 (404)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 276 (404)
+...+..+...|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567777778888888888888888877664 456777888888888888888888888887766433 5667777888
Q ss_pred HHHcCCCHHHHHHHHHHHhhC
Q 015590 277 GLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 277 ~~~~~g~~~~a~~~~~~m~~~ 297 (404)
.|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888877765
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=3.9e-05 Score=70.16 Aligned_cols=199 Identities=9% Similarity=-0.054 Sum_probs=143.6
Q ss_pred HHHhcCCChhHHHHHHHHHhhCCCCCCC---------------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCC-
Q 015590 63 KIFSNLRDPISVISVLNQYSKRKDYNPN---------------EALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFS- 126 (404)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 126 (404)
+.+...|++++|++.|..+++...-..+ ...+..+...|...|++++|.+.+..+.........
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4567789999999999999875432222 124778899999999999999999887543211111
Q ss_pred --hHHHHHHHHHHHhhcCCHHHHHHHHhhccc----CCCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCC-----
Q 015590 127 --DGFFYNVIKIYGNMAGRISKAIETLFDMPS----YNCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGV----- 194 (404)
Q Consensus 127 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----- 194 (404)
.....+.+..+....|++++|.+++++... .+..+. ..++..+...+...|++++|..+++++...-.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 123455666666667999999999887643 222222 45788899999999999999999998875421
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC----CCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015590 195 EIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ----NCEPN--VRTYSTLMHGLCEKGNVEEAFGLLERMES 261 (404)
Q Consensus 195 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 261 (404)
+....++..++..|...|++++|...++..... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 122457888999999999999999999876532 21222 34566777778889999999988877653
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=6.4e-05 Score=68.67 Aligned_cols=190 Identities=8% Similarity=-0.002 Sum_probs=92.3
Q ss_pred cCCHHHHHHHHhhcccCCCCc-c---------------HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCC-CCCH----h
Q 015590 141 AGRISKAIETLFDMPSYNCWP-S---------------VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGV-EIDA----C 199 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p-~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~----~ 199 (404)
.|++++|++.|.++.+..... + ...+..+...|...|++++|.+.+..+.+.-- .++. .
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 677777777777665532111 0 01245566666666666666666665544210 1111 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHchh----CCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--CC-CHH
Q 015590 200 CLNILLKGLCENGNLEAAFYVLDEFPK----QNCEP-NVRTYSTLMHGLCEKGNVEEAFGLLERMESE--GI--DA-DTV 269 (404)
Q Consensus 200 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~--~p-~~~ 269 (404)
+.+.+-..+...|+++.|..++..... .+..+ -..++..+...|...|++++|..+++++... +. .+ ...
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 176 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD 176 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence 222222333344566666666655432 11111 2334555666666666666666666655432 11 11 123
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhC----CCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015590 270 TFNILISGLRKQGKVEEGMKLLERMKGK----GCYPN--SASYQEVLYGLLDKKRFPEAKELVGRMI 330 (404)
Q Consensus 270 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (404)
++..++..|...|++++|..++++.... +..+. ...+..+...+...|++++|...|.+..
T Consensus 177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 177 VHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555556666666666666666554432 11111 1233444444455566666666555554
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=1.1e-05 Score=59.53 Aligned_cols=94 Identities=11% Similarity=-0.048 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH
Q 015590 166 FNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE 245 (404)
Q Consensus 166 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 245 (404)
+..+...+.+.|++++|...++...+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344445555566666666666555543 3345555555555666666666666665555543 3344555555555556
Q ss_pred cCCHHHHHHHHHHHHH
Q 015590 246 KGNVEEAFGLLERMES 261 (404)
Q Consensus 246 ~~~~~~A~~~~~~m~~ 261 (404)
.|++++|+..|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666555544
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=1.1e-05 Score=59.48 Aligned_cols=94 Identities=11% Similarity=-0.004 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 015590 202 NILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQ 281 (404)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 281 (404)
..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+...+...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 334445555556666655555555443 334555555555555555555555555555544322 344555555555555
Q ss_pred CCHHHHHHHHHHHhhC
Q 015590 282 GKVEEGMKLLERMKGK 297 (404)
Q Consensus 282 g~~~~a~~~~~~m~~~ 297 (404)
|++++|...|++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5555555555555543
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=5.9e-05 Score=57.21 Aligned_cols=96 Identities=11% Similarity=0.016 Sum_probs=45.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 015590 198 ACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPN----VRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNI 273 (404)
Q Consensus 198 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 273 (404)
...+..+...+...|++++|...|++..+.. |+ ...|..+...|...|++++|+..+++..+.... +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 3444455555555555555555555554432 22 344444455555555555555555554443211 3334444
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhh
Q 015590 274 LISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 274 li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
+...+...|++++|...|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444555555555544443
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=1.2e-05 Score=74.56 Aligned_cols=114 Identities=15% Similarity=0.019 Sum_probs=55.1
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYV 220 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 220 (404)
.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.+++..+.. +.+..++..+..+|.+.|++++|.+.
T Consensus 19 ~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455555555555554432 1124455555555555555555555555555543 33445555555555555555555555
Q ss_pred HHHchhCCCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 015590 221 LDEFPKQNCEPNVRTYSTLMHG--LCEKGNVEEAFGLLE 257 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~A~~~~~ 257 (404)
|++..+.. +.+...+..+..+ +.+.|++++|+..++
T Consensus 97 ~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55554432 2223333333333 455555555555554
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.21 E-value=7.9e-06 Score=63.07 Aligned_cols=132 Identities=10% Similarity=-0.018 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CCCC-Chh
Q 015590 235 TYSTLMHGLCEKGNVEEAFGLLERMESEGID-AD----TVTFNILISGLRKQGKVEEGMKLLERMKGK----GCYP-NSA 304 (404)
Q Consensus 235 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~ 304 (404)
++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555544322100 01 124455555556666666666666554432 1000 123
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 305 SYQEVLYGLLDKKRFPEAKELVGRMICE----RMSP-SFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 305 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4555666666777777777777665532 1111 124556666777777888888877777654
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=0.0001 Score=54.44 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=42.0
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCc---HHHHHHHHHHH
Q 015590 170 LNLLVSAKLYGEIQGIYTSAAKLGVEIDA---CCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPN---VRTYSTLMHGL 243 (404)
Q Consensus 170 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~ 243 (404)
...+...|++++|...|+.+.+.. +.+. ..+..+..+|.+.|++++|...|+...+.. +.+ ..++..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 334444555555555555554432 1112 244444455555555555555555544432 112 33344444555
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 015590 244 CEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~ 262 (404)
.+.|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555554443
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=1.6e-05 Score=73.80 Aligned_cols=124 Identities=15% Similarity=0.018 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH
Q 015590 166 FNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE 245 (404)
Q Consensus 166 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 245 (404)
+..+...+.+.|++++|.+.|++..+.. +.+..++..+..+|.+.|++++|...+++..+.. +.+..+|..+..+|.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344455677888888888888888774 4567888888888888888888888888888775 5567788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHH
Q 015590 246 KGNVEEAFGLLERMESEGIDADTVTFNILISG--LRKQGKVEEGMKLLE 292 (404)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 292 (404)
.|++++|+..|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888888765332 33445445444 777788888888877
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.16 E-value=1.7e-05 Score=61.06 Aligned_cols=95 Identities=12% Similarity=-0.041 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHchhC----CCCC-cHH
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVE-ID----ACCLNILLKGLCENGNLEAAFYVLDEFPKQ----NCEP-NVR 234 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~ 234 (404)
++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +-++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555555566666666666666655433100 01 124555555556666666666655554321 1000 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 015590 235 TYSTLMHGLCEKGNVEEAFGLLERM 259 (404)
Q Consensus 235 ~~~~li~~~~~~~~~~~A~~~~~~m 259 (404)
++..+...+...|++++|...+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444555555555555555555544
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=2.5e-05 Score=72.08 Aligned_cols=120 Identities=11% Similarity=-0.029 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC---------------HhHHHHHHHHHHhcCChHHHHHHHHHchhCC
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEID---------------ACCLNILLKGLCENGNLEAAFYVLDEFPKQN 228 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 228 (404)
..|..+...+.+.|++++|...|++..+.. +.+ ..+|..+..+|.+.|++++|...++...+..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 456666777777777777777777776642 111 2444444555555555555555555444433
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 015590 229 CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEE 286 (404)
Q Consensus 229 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 286 (404)
+.+..+|..+..+|...|++++|+..|++..+.... +...+..+...+.+.++.++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555544443211 22334444444444444443
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.13 E-value=7.3e-05 Score=55.30 Aligned_cols=93 Identities=16% Similarity=0.070 Sum_probs=44.1
Q ss_pred HHHHHHhcCChHHHHHHHHHchhCCCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 015590 204 LLKGLCENGNLEAAFYVLDEFPKQNCEPNV---RTYSTLMHGLCEKGNVEEAFGLLERMESEGIDAD--TVTFNILISGL 278 (404)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~ 278 (404)
+...+...|++++|...|+...+.. +.+. ..+..+...+.+.|++++|...|++..+...... ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444555555555555555554432 1122 2444455555555555555555555544321100 23344444455
Q ss_pred HcCCCHHHHHHHHHHHhhC
Q 015590 279 RKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 279 ~~~g~~~~a~~~~~~m~~~ 297 (404)
...|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.07 E-value=5e-05 Score=67.94 Aligned_cols=96 Identities=10% Similarity=0.072 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcC---------------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCC
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLG---------------VEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNC 229 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 229 (404)
.|..+...+.+.|++++|++.|++..+.- -+.+..+|..+..+|.+.|++++|...+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 46666777778888888888887776520 01122334444444444444444444444444332
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015590 230 EPNVRTYSTLMHGLCEKGNVEEAFGLLERMES 261 (404)
Q Consensus 230 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 261 (404)
+.+...|..+..+|...|++++|+..|++..+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22333444444444444444444444444433
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=1.2e-05 Score=58.84 Aligned_cols=83 Identities=22% Similarity=0.061 Sum_probs=34.3
Q ss_pred CcHhHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 015590 177 KLYGEIQGIYTSAAKLG--VEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFG 254 (404)
Q Consensus 177 ~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 254 (404)
|++++|+..|++..+.+ -+.+..++..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34444444444444332 11223334444444444444444444444444332 2333444444444444444444444
Q ss_pred HHHHHH
Q 015590 255 LLERME 260 (404)
Q Consensus 255 ~~~~m~ 260 (404)
.|++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.05 E-value=7.2e-05 Score=58.09 Aligned_cols=98 Identities=17% Similarity=0.060 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHc-------CC----------CCCHhHHHHHHHHHHhcCChHHHHHHHHHchh
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKL-------GV----------EIDACCLNILLKGLCENGNLEAAFYVLDEFPK 226 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 226 (404)
..+......+.+.|++++|+..|....+. .- +.+..+|..+..+|.+.|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45556666666777777777777666543 00 11224455555555555666666555555554
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 227 QNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 227 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 43 344555555555555566666665555555544
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.03 E-value=1e-05 Score=59.13 Aligned_cols=86 Identities=15% Similarity=0.078 Sum_probs=51.5
Q ss_pred cCChHHHHHHHHHchhCC--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 015590 211 NGNLEAAFYVLDEFPKQN--CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGM 288 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 288 (404)
.|++++|...|++..+.+ -+.+...|..+...|.+.|++++|+..|++..+.... +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777666543 1234455666666677777777777777766655433 4556666666666677777777
Q ss_pred HHHHHHhhC
Q 015590 289 KLLERMKGK 297 (404)
Q Consensus 289 ~~~~~m~~~ 297 (404)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 766666554
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.00 E-value=0.0001 Score=57.18 Aligned_cols=99 Identities=11% Similarity=0.033 Sum_probs=60.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHchhC--------C---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 198 ACCLNILLKGLCENGNLEAAFYVLDEFPKQ--------N---------CEPNVRTYSTLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 198 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
...+......+.+.|++++|...|....+. . -+.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345667778888888888888888877653 0 01223455556666666666666666666655
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 261 SEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 261 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
+.... +...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54322 4455555666666666666666666665554
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.98 E-value=0.00047 Score=65.28 Aligned_cols=172 Identities=11% Similarity=-0.018 Sum_probs=111.7
Q ss_pred HhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC----------hHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcC-
Q 015590 179 YGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGN----------LEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKG- 247 (404)
Q Consensus 179 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 247 (404)
.++|++.++.+.+.. +-+..+|+.--..+.+.|+ ++++.+.++.+.+.. +.+..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 346677777776654 4455566655555555555 677777777777665 666777777777777777
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc---------
Q 015590 248 -NVEEAFGLLERMESEGIDADTVTFNILISGLRKQG-KVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDK--------- 316 (404)
Q Consensus 248 -~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------- 316 (404)
++++++..++++.+...+ +..+|+.-...+.+.| ..+++.+.++++.+..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 567777777777776554 6667776666666667 677777777777766433 556666655555542
Q ss_pred -----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 015590 317 -----KRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVE 355 (404)
Q Consensus 317 -----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 355 (404)
+.++++++.+.++.... +-|...|.-.-..+.+.+..+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 44677888887777642 335666776666666666533
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.96 E-value=0.00013 Score=67.34 Aligned_cols=123 Identities=10% Similarity=-0.030 Sum_probs=70.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 198 ACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPN---------------VRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 198 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
...+..+...|.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..|++..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4456667777777777777777777766542 112 355556666666666666666666665554
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 015590 263 GIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAK 323 (404)
Q Consensus 263 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 323 (404)
... +...|..+..+|...|++++|...|++..+... -+...+..+..++.+.++.+++.
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 322 445555566666666666666666666655421 13344555555555555555444
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.94 E-value=0.0001 Score=65.93 Aligned_cols=137 Identities=9% Similarity=-0.054 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015590 200 CLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLR 279 (404)
Q Consensus 200 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 279 (404)
.+..+...+.+.|++++|...|++..+.- ++.. .....+++.. .. ..+...|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~~~~~~-------~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAEDADGAK-------LQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCHHHHGG-------GH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccChHHHHH-------HH-HHHHHHHHHHHHHHH
Confidence 46667778888888888888888776410 0000 0000010000 00 013345555555666
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 015590 280 KQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVD 358 (404)
Q Consensus 280 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 358 (404)
+.|++++|+..+++..+.. +-+...|..+..+|...|++++|++.|++..+.. +.+...+..+..++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665542 1134555556666666666666666666665541 224445555555555555555544
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.90 E-value=3.4e-05 Score=68.13 Aligned_cols=147 Identities=13% Similarity=0.051 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
..+..+...+.+.|++++|...|+...+.. |+... +...|+.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 345556666667777777777777766542 32221 112222222222110 12566667777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHH-HHhcCChhH
Q 015590 244 CEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYP-NSASYQEVLYG-LLDKKRFPE 321 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~-~~~~g~~~~ 321 (404)
.+.|++++|+..|++..+.... +...|..+..+|...|++++|...|++..+. .| +...+..+... ....+..++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776655322 5566777777777777777777777776655 22 23334444333 223455666
Q ss_pred HHHHHHHHHHC
Q 015590 322 AKELVGRMICE 332 (404)
Q Consensus 322 a~~~~~~~~~~ 332 (404)
+.+.|..|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 67777776543
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.87 E-value=0.00066 Score=51.07 Aligned_cols=110 Identities=17% Similarity=0.054 Sum_probs=50.1
Q ss_pred cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHH----cCCHHHHH
Q 015590 178 LYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCE----KGNVEEAF 253 (404)
Q Consensus 178 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~ 253 (404)
++++|.++|+...+.| .++.. +...|...+.+++|.++|+...+.| +..++..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555555444 22222 4444444444445555555544433 33444444444444 44555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHhhCC
Q 015590 254 GLLERMESEGIDADTVTFNILISGLRK----QGKVEEGMKLLERMKGKG 298 (404)
Q Consensus 254 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 298 (404)
..|++..+.| +...+..|...|.. .++.++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555544442 33344444444444 444555555555444443
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.87 E-value=0.0016 Score=61.57 Aligned_cols=174 Identities=10% Similarity=-0.025 Sum_probs=129.5
Q ss_pred CchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCC----------HHHHHHHHhhcccCCCCccHHHHHHHHHHHHh
Q 015590 106 RFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGR----------ISKAIETLFDMPSYNCWPSVKTFNLVLNLLVS 175 (404)
Q Consensus 106 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 175 (404)
.-++|.+.++.+.... |.....|+.-.......|+ ++++++.++++.+.. +-+..+|+.-.-.+.+
T Consensus 44 ~~eeal~~~~~~l~~n---P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3456788888877654 4555555543333333444 889999999888755 2356688887778888
Q ss_pred cC--cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc------
Q 015590 176 AK--LYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENG-NLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK------ 246 (404)
Q Consensus 176 ~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------ 246 (404)
.+ +++++++.++.+.+.. +-+..+|+.-.....+.| .++++.+.++++.+.. +-|..+|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence 88 7799999999999886 668888888888888888 8899999999998876 66888888877777663
Q ss_pred --------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 015590 247 --------GNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEE 286 (404)
Q Consensus 247 --------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 286 (404)
+.++++++.+++....... |...|+.+-..+.+.++.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578899999888876544 67788887777777666433
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.85 E-value=0.00045 Score=51.99 Aligned_cols=88 Identities=10% Similarity=-0.091 Sum_probs=39.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015590 275 ISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLD----KKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCN 350 (404)
Q Consensus 275 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 350 (404)
...|...+..++|.+.|++..+.| +...+..|-..|.. .+++++|.+.|++..+.| +...+..+...|..
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYA 105 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHC
Confidence 333333344444444444444443 33344444444444 444555555555444432 23334444444444
Q ss_pred ----CCChHHHHHHHHHHHHCC
Q 015590 351 ----QKLVEDVDWVLKKMVQQG 368 (404)
Q Consensus 351 ----~g~~~~a~~~~~~m~~~~ 368 (404)
.++.++|...|++..+.|
T Consensus 106 G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcCHHHHHHHHHHHHHCC
Confidence 445555555555554443
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.84 E-value=0.00031 Score=53.67 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCC-C-----C-----HhHHHHHHHHHHhcCChHHHHHHHHHchhC------
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVE-I-----D-----ACCLNILLKGLCENGNLEAAFYVLDEFPKQ------ 227 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~-----~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------ 227 (404)
.+......+.+.|++++|+..|+..++.... | + ...|..+..++.+.|++++|+..++...+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4455556666777777777777777665311 0 1 114555555555555555555555544443
Q ss_pred -CCCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 228 -NCEPNVRTY----STLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 228 -~~~~~~~~~----~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
. +-+...| .....++...|++++|+..|++..
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 2233344 455555555555555555555543
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.82 E-value=5.2e-05 Score=66.95 Aligned_cols=94 Identities=16% Similarity=0.016 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHH-H
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHG-L 243 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~ 243 (404)
.|..+..++.+.|++++|+..++...+.. +.+...+..+..+|...|++++|...|+...+.. +.+...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 45555555555566666666665555543 3345555555555555566666655555554432 2223333333332 1
Q ss_pred HHcCCHHHHHHHHHHHH
Q 015590 244 CEKGNVEEAFGLLERME 260 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~ 260 (404)
...+..+++...|..|.
T Consensus 310 ~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIF 326 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 22333444444554444
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=2.3e-05 Score=56.23 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC
Q 015590 162 SVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ 227 (404)
Q Consensus 162 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 227 (404)
+...|..+...+...|++++|.+.|+...+.. +.+...+..+..+|.+.|++++|...++...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34556666666666667777777666666653 445566666666666666666666666666654
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.74 E-value=0.00018 Score=66.53 Aligned_cols=86 Identities=14% Similarity=0.008 Sum_probs=43.6
Q ss_pred HhcCcHhHHHHHHHHHHHcC---CCC----CHhHHHHHHHHHHhcCChHHHHHHHHHchh-----CC--CCCcHHHHHHH
Q 015590 174 VSAKLYGEIQGIYTSAAKLG---VEI----DACCLNILLKGLCENGNLEAAFYVLDEFPK-----QN--CEPNVRTYSTL 239 (404)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~g---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~--~~~~~~~~~~l 239 (404)
...|++++|+.++++..+.. +.+ ...+++.|...|...|++++|+.++++..+ .| .+-...+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35566666666666554321 111 133555566666666666666655555432 11 11123345555
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 015590 240 MHGLCEKGNVEEAFGLLERM 259 (404)
Q Consensus 240 i~~~~~~~~~~~A~~~~~~m 259 (404)
...|...|++++|+.++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55566666666665555554
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.70 E-value=0.0005 Score=46.95 Aligned_cols=78 Identities=15% Similarity=0.110 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHH
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
..|..+...+...|++++|...++...+.. +.+..++..+...|.+.|++++|...|++..+.. +.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555555556666666555555543 3344455555555555555555555555554432 23334444444333
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.69 E-value=0.00057 Score=52.25 Aligned_cols=62 Identities=11% Similarity=-0.016 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHchhCCCC-C-----cH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015590 200 CLNILLKGLCENGNLEAAFYVLDEFPKQNCE-P-----NV-----RTYSTLMHGLCEKGNVEEAFGLLERMES 261 (404)
Q Consensus 200 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~ 261 (404)
.+......+.+.|++++|...|+...+.... | +. ..|+.+..++.+.|++++|+..+++..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445556666677777777777766554211 0 11 1555555555555555555555555443
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=6.7e-05 Score=53.76 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 234 RTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 234 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
..|..+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|...+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34444555555555555555555555443221 3444445555555555555555555555543
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.66 E-value=0.00041 Score=50.11 Aligned_cols=77 Identities=17% Similarity=0.019 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 182 IQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 182 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
++..|+...+.. +.+...+..+...|...|++++|...|+...+.. +.+...|..+...|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444332 2334444444444444555555555544444432 2334444444444555555555555444443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00023 Score=51.44 Aligned_cols=80 Identities=19% Similarity=0.072 Sum_probs=55.5
Q ss_pred HHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 015590 216 AAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMK 295 (404)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 295 (404)
.|...|++..+.. +.+...|..+...|...|++++|+..|++..+.... +...|..+...|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666665554 456677777777778888888888888777765332 45667777777777777777777777766
Q ss_pred hC
Q 015590 296 GK 297 (404)
Q Consensus 296 ~~ 297 (404)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.60 E-value=0.00062 Score=46.46 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 199 CCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 199 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
..+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344445555555555555555555554432 334445555555555555555555555555443
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.50 E-value=0.00051 Score=63.54 Aligned_cols=122 Identities=7% Similarity=-0.042 Sum_probs=90.3
Q ss_pred hcCCHHHHHHHHhhccc-----CC-CCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHc-----CC--CCCHhHHHHHH
Q 015590 140 MAGRISKAIETLFDMPS-----YN-CWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKL-----GV--EIDACCLNILL 205 (404)
Q Consensus 140 ~~g~~~~A~~~~~~m~~-----~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~--~~~~~~~~~li 205 (404)
..|++++|+.++++..+ .| -.|+ ..+++.+...|...|++++|+.++++..+. |- +....+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 37999999988876543 12 1133 357999999999999999999999987643 21 22356789999
Q ss_pred HHHHhcCChHHHHHHHHHchh-----CC--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015590 206 KGLCENGNLEAAFYVLDEFPK-----QN--CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMES 261 (404)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~-----~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 261 (404)
..|...|++++|+.++++..+ .| .+....+.+.+-.++...+.+++|+.+|..+.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987653 23 122234456666777788888999998888865
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.46 E-value=0.00053 Score=52.30 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=45.8
Q ss_pred cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC----------hHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc-
Q 015590 178 LYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGN----------LEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK- 246 (404)
Q Consensus 178 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 246 (404)
.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++..+.. +.+..+|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence 3444444444444433 3344444444444444433 335555555555543 33445555555555544
Q ss_pred ----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015590 247 ----------GNVEEAFGLLERMESEGIDADTVTFNILI 275 (404)
Q Consensus 247 ----------~~~~~A~~~~~~m~~~~~~p~~~~~~~li 275 (404)
|++++|+..|++..+. .|+...|...+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3566666666666654 44444443333
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.39 E-value=0.00079 Score=47.28 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015590 234 RTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERM 294 (404)
Q Consensus 234 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 294 (404)
..|..+...|.+.|++++|+..|++..+.... +...|..+..+|...|++++|...|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444444444444444444333211 2333444444444444444444444433
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.34 E-value=0.0012 Score=46.35 Aligned_cols=60 Identities=7% Similarity=-0.162 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHc
Q 015590 164 KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEF 224 (404)
Q Consensus 164 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 224 (404)
..+..+...+.+.|++++|+..|+...+.. +.+...|..+..+|...|++++|...|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444555555555555444443 223334444444444444444444444443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.31 E-value=0.00048 Score=52.51 Aligned_cols=86 Identities=9% Similarity=-0.035 Sum_probs=52.6
Q ss_pred hcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015590 210 ENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNV----------EEAFGLLERMESEGIDADTVTFNILISGLR 279 (404)
Q Consensus 210 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 279 (404)
+.+.+++|.+.++...+.. +.+...|+.+..++.+.+++ ++|+..|++..+.... +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 4456777777777777665 56777777777777776654 3666666666655333 4455666666665
Q ss_pred cCC-----------CHHHHHHHHHHHhhC
Q 015590 280 KQG-----------KVEEGMKLLERMKGK 297 (404)
Q Consensus 280 ~~g-----------~~~~a~~~~~~m~~~ 297 (404)
..| ++++|.+.|++..+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 543 455555555555544
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.11 E-value=0.011 Score=51.82 Aligned_cols=74 Identities=15% Similarity=0.016 Sum_probs=51.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHH
Q 015590 300 YPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWR 377 (404)
Q Consensus 300 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 377 (404)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.. .+.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al--rL~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF--NLRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCcChHH
Confidence 3456666666666666688888888888877753 676666666677777888888888887776 3456666654
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.08 E-value=0.083 Score=46.27 Aligned_cols=48 Identities=0% Similarity=-0.299 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHHHh--cC---cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 015590 161 PSVKTFNLVLNLLVS--AK---LYGEIQGIYTSAAKLGVEIDACCLNILLKGLC 209 (404)
Q Consensus 161 p~~~~~~~ll~~~~~--~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 209 (404)
.+...|...+++... .+ +..+|..+|++..+.. |-....+..+.-+|.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDI 244 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 455667766655432 22 3567888888888764 333455554444443
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.98 E-value=0.022 Score=56.36 Aligned_cols=149 Identities=16% Similarity=0.149 Sum_probs=81.8
Q ss_pred cCCHHHHHH-HHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 015590 141 AGRISKAIE-TLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 141 ~g~~~~A~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 219 (404)
.+++++|.+ ++..+. +......++..+.+.|.+++|.++.++-. .-.......|+++.|.+
T Consensus 612 ~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 612 RGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARD 673 (814)
T ss_dssp TTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHH
T ss_pred hCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHH
Confidence 577777766 443322 01222666666677777777766553111 11334556778888877
Q ss_pred HHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC
Q 015590 220 VLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGC 299 (404)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 299 (404)
+.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...|...|+.+...++-+.....|
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~- 737 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG- 737 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 75544 3556788888888888888888888877642 2233344444555555554444444332
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 015590 300 YPNSASYQEVLYGLLDKKRFPEAKELVGR 328 (404)
Q Consensus 300 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (404)
-++.-..+|.+.|++++|++++.+
T Consensus 738 -----~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 -----KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----chHHHHHHHHHcCCHHHHHHHHHH
Confidence 122223334444555555544443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.78 E-value=0.0045 Score=56.25 Aligned_cols=62 Identities=11% Similarity=-0.028 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 015590 234 RTYSTLMHGLCEKGNVEEAFGLLERMESE-----GI-DAD-TVTFNILISGLRKQGKVEEGMKLLERMK 295 (404)
Q Consensus 234 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 295 (404)
.+++.+..+|...|++++|+.++++..+- |. .|+ ..+++.|...|...|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34555555555555555555555554321 11 111 2345555555555555555555555443
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.75 E-value=0.0039 Score=43.26 Aligned_cols=50 Identities=4% Similarity=-0.065 Sum_probs=19.3
Q ss_pred hcCcHhHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHch
Q 015590 175 SAKLYGEIQGIYTSAAKLGVEIDAC-CLNILLKGLCENGNLEAAFYVLDEFP 225 (404)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~ 225 (404)
+.|++++|...++...+.. +.+.. .+..+..+|...|++++|...|++..
T Consensus 12 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 12 NQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444443332 22223 33333344444444444444444333
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.67 E-value=0.0053 Score=42.56 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=36.5
Q ss_pred HHHHHhcCChHHHHHHHHHchhCCCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 205 LKGLCENGNLEAAFYVLDEFPKQNCEPNVR-TYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 205 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
...+.+.|++++|...|+...+.. +.+.. .|..+...|...|++++|...|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445566677777777777666553 33445 6666666667777777777777766655
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.67 E-value=0.0093 Score=54.19 Aligned_cols=92 Identities=15% Similarity=0.026 Sum_probs=54.6
Q ss_pred HHHHHhcCChHHHHHHHHHchhC---CCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHH
Q 015590 205 LKGLCENGNLEAAFYVLDEFPKQ---NCE----PNVRTYSTLMHGLCEKGNVEEAFGLLERMESE-----GI-DAD-TVT 270 (404)
Q Consensus 205 i~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~~-~p~-~~~ 270 (404)
+.-+.+.|++++|+.++++..+. -+. ....+++.+...|...|++++|+.++++..+- |. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33444566777777777665432 111 12346667777777777777777777765431 21 122 345
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhh
Q 015590 271 FNILISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 271 ~~~li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66777777777777777777766543
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.59 E-value=0.04 Score=40.08 Aligned_cols=63 Identities=24% Similarity=0.183 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCC
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQN 228 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 228 (404)
..+..++.+...|.-++..+++..+... .+|++...-.+.++|.+.|+..+|.+++.+..+.|
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3444444555555555555555543322 14444444455555555555555555555555444
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.54 E-value=0.054 Score=53.55 Aligned_cols=154 Identities=10% Similarity=0.024 Sum_probs=96.6
Q ss_pred HHHHhcCcHhHHHH-HHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCH
Q 015590 171 NLLVSAKLYGEIQG-IYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNV 249 (404)
Q Consensus 171 ~~~~~~~~~~~a~~-~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 249 (404)
......+++++|.+ ++.. ++ +......++..+.+.|.++.|.++.++ |. .-.....+.|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 34456788888876 4421 12 122337888889999999999876532 11 113445778999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 015590 250 EEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 250 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 329 (404)
++|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.+ |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999986554 3778999999999999999999999998763 223334444455555555554444
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 015590 330 ICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKK 363 (404)
Q Consensus 330 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 363 (404)
...|. ++....+|.+.|++++|.+++.+
T Consensus 734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 44331 22223334444455555444443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.49 E-value=0.017 Score=52.51 Aligned_cols=92 Identities=13% Similarity=-0.013 Sum_probs=69.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhC--C-CCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCC-HHH
Q 015590 275 ISGLRKQGKVEEGMKLLERMKGK--G-CYPN----SASYQEVLYGLLDKKRFPEAKELVGRMICE-----R-MSPS-FVS 340 (404)
Q Consensus 275 i~~~~~~g~~~~a~~~~~~m~~~--~-~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~-~~~ 340 (404)
+..+...|++++|+.++++..+. . +.|+ ..+++.+...|...|++++|+.++++..+. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566778999999999888754 1 1222 457888889999999999999999887643 2 2233 356
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 341 YKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888999999999999999988764
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.26 E-value=0.082 Score=36.19 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 231 PNVRTYSTLMHGLCEKGN---VEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 231 ~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
.|...+..+..++...++ .++|..+|++..+.... +......+...+.+.|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444433322 35555555555444222 3344444444455555555555555555544
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.17 E-value=0.043 Score=37.66 Aligned_cols=48 Identities=10% Similarity=0.076 Sum_probs=22.1
Q ss_pred HhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC
Q 015590 179 YGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ 227 (404)
Q Consensus 179 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 227 (404)
.++|..++++..+.. +-++.....+...+.+.|++++|...|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444443 333444444444444444444444444444443
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.12 E-value=0.016 Score=52.67 Aligned_cols=85 Identities=11% Similarity=-0.100 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHhhccc-----CC-CCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHc-----CC-CC-CHhHHHHHHH
Q 015590 141 AGRISKAIETLFDMPS-----YN-CWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKL-----GV-EI-DACCLNILLK 206 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~-----~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~-~~~~~~~li~ 206 (404)
.|++++|+.++++..+ .| -.|+ ..+++.+..+|...|++++|+.++++..+. |- .| ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 5778888888876533 11 1122 257888888888888888888888877642 21 12 2345677777
Q ss_pred HHHhcCChHHHHHHHHHch
Q 015590 207 GLCENGNLEAAFYVLDEFP 225 (404)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~ 225 (404)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777777654
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.01 E-value=0.055 Score=40.75 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHH
Q 015590 251 EAFGLLERMESEGIDADTVTFNILISGLRKQG---KVEEGMKLLERMKGKGCYP--NSASYQEVLYGLLDKKRFPEAKEL 325 (404)
Q Consensus 251 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~ 325 (404)
.+.+-|.+..+.|. ++..+...+..++++.+ +.+++..++++..+.. .| +...+-.+.-++.+.|++++|.++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 33344444333333 34444444444444444 3334555555444432 12 123333333344455555555555
Q ss_pred HHHHHH
Q 015590 326 VGRMIC 331 (404)
Q Consensus 326 ~~~~~~ 331 (404)
++.+.+
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555444
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.27 Score=38.03 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=56.7
Q ss_pred HHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 015590 206 KGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVE 285 (404)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 285 (404)
.....+|+++.|.++.+.+. +...|..+.......|+++-|.+.|.+... +..+.--|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 34455666666666655542 455666666666666666666666665431 223333344456665
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 015590 286 EGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRM 329 (404)
Q Consensus 286 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 329 (404)
+-..+-+.....| -++.-...+...|+++++.+++.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5555544444443 2333444455566666666666443
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.79 E-value=0.1 Score=36.54 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHchh
Q 015590 163 VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLG------VEIDACCLNILLKGLCENGNLEAAFYVLDEFPK 226 (404)
Q Consensus 163 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 226 (404)
...+..+...+.+.+++..|...|+...+.- -.+...++..+..+|.+.|+++.|...+++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344445555555555555555555544321 012334444455555555555555555554443
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.72 E-value=0.79 Score=38.59 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcC-----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CChh
Q 015590 250 EEAFGLLERMESEGIDAD---TVTFNILISGLRKQ-----GKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDK-KRFP 320 (404)
Q Consensus 250 ~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~ 320 (404)
..|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4455555555544 233 34566666666663 66666666666666552111245555555555553 6666
Q ss_pred HHHHHHHHHHHCCCC
Q 015590 321 EAKELVGRMICERMS 335 (404)
Q Consensus 321 ~a~~~~~~~~~~~~~ 335 (404)
++.+.+++.......
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666666655433
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.44 Score=36.79 Aligned_cols=103 Identities=11% Similarity=0.170 Sum_probs=76.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 015590 241 HGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFP 320 (404)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 320 (404)
....+.|+++.|.++.+++. +...|..|.......|+++-|++.|....+ +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 44568999999999988762 788999999999999999999999998763 334455566678877
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 015590 321 EAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKM 364 (404)
Q Consensus 321 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (404)
.-.++-+.....|- ++.....+...|+++++.+++.+.
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 77766666555442 455555666778888888777553
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.54 E-value=0.16 Score=35.48 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=43.0
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHchhCC------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 015590 196 IDACCLNILLKGLCENGNLEAAFYVLDEFPKQN------CEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESE 262 (404)
Q Consensus 196 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 262 (404)
.+..-+..+...+.+.|+++.|..+|+...+.- -.+....+..+..+|.+.|++++|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344556667777777777777777777655420 1234556666777777777777777777776654
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.39 E-value=0.13 Score=38.71 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=36.6
Q ss_pred HHHHHHHHchhCCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCCHHHHHHH
Q 015590 216 AAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKG---NVEEAFGLLERMESEGIDA--DTVTFNILISGLRKQGKVEEGMKL 290 (404)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~ 290 (404)
.+++-|.+..+.| +++..+...+..++++.+ +.++++.+|++..+.+ .| ....+-.+.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3344444333333 344444444555555544 3335555555554442 12 122233344444555555555555
Q ss_pred HHHHhhC
Q 015590 291 LERMKGK 297 (404)
Q Consensus 291 ~~~m~~~ 297 (404)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555544
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.33 E-value=1.1 Score=37.73 Aligned_cols=128 Identities=13% Similarity=0.044 Sum_probs=79.2
Q ss_pred CCHHHHHHHHhhcccCCCCccHHHHHHHHH-HHHhc--Cc------HhHHHHHHHHHHHcCCCCC---HhHHHHHHHHHH
Q 015590 142 GRISKAIETLFDMPSYNCWPSVKTFNLVLN-LLVSA--KL------YGEIQGIYTSAAKLGVEID---ACCLNILLKGLC 209 (404)
Q Consensus 142 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~--~~------~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~ 209 (404)
++..+-.+.+.+....+ +....|..++. .+... |+ ...|...+++.++. .|+ ...|..+...|.
T Consensus 135 ~~~~~~~~~l~~~~~~d--ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVD--VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp SCHHHHHHHHTTCCGGG--HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHcCccc--cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHH
Confidence 44444444555544322 33345655544 23332 32 44666667777665 344 567888888888
Q ss_pred hc-----CChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 015590 210 EN-----GNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEK-GNVEEAFGLLERMESEGID--ADTVTFNI 273 (404)
Q Consensus 210 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~--p~~~~~~~ 273 (404)
+. |+.++|.+.|++..+.+-.-+..++......++.. |+.+++.+.+++....... |+....+.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 84 88888888888887764212367777777777774 8888888888888877655 55444443
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.10 E-value=0.66 Score=33.89 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=83.8
Q ss_pred cCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 015590 211 NGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKL 290 (404)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 290 (404)
.|.+++..++..+.... .+..-||.+|--....-+-+-..++++..-+. .|. ..+|+.......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 46667777776666552 34455565555555555555555554444321 221 234555555544
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 015590 291 LERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFV 370 (404)
Q Consensus 291 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 370 (404)
+-.+-. +...+..-++.+...|+-++-.++...+... .+|++...-.+..+|.+.|+..+|.+++.+..+.|++
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 443332 3455566677777778877777777775432 4677777777778888888888888888887777765
No 231
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.98 E-value=1.6 Score=38.78 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-----CCCCCChhh
Q 015590 237 STLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKG-----KGCYPNSAS 305 (404)
Q Consensus 237 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 305 (404)
..++..+...|++++|...+..+..... .+...|..+|.++.+.|+..+|++.|+...+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3344555555666666555555544322 2455555666666666666666655555432 155555544
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.73 E-value=0.28 Score=36.57 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=17.3
Q ss_pred CCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHH
Q 015590 230 EPNVRTYSTLMHGLCEKGNV------EEAFGLLERMES 261 (404)
Q Consensus 230 ~~~~~~~~~li~~~~~~~~~------~~A~~~~~~m~~ 261 (404)
+.|..+|-..+...-+.|++ ++..++|++...
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia 47 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE 47 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH
Confidence 34455555555555555555 555555555544
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.55 E-value=2.6 Score=38.22 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015590 238 TLMHGLCEKGNVEEAFGLLERMESEGIDAD-----TVTFNILISGLRKQGKVEEGMKLLERM 294 (404)
Q Consensus 238 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m 294 (404)
.|...|...|++.+|..++..+...-...+ ...+..-++.|...+++.+|..+++++
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444555555555555554432111111 122333444444555555555555443
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.08 E-value=0.56 Score=34.98 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC
Q 015590 247 GNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCY 300 (404)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 300 (404)
++.++|.++|+.+...+-+. ...|......-.+.|+...|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 56666666666665443333 555555555556667777777777766665544
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.63 E-value=6.3 Score=39.20 Aligned_cols=260 Identities=12% Similarity=0.015 Sum_probs=120.4
Q ss_pred HHhcCCChhHHHHHHHHHhhCCCCCCCHH--HHHHHHHHHHhcCCchHHHHHHHHHHhcccC--CC--ChHHHHHHHHHH
Q 015590 64 IFSNLRDPISVISVLNQYSKRKDYNPNEA--LYTLIINKLAQAKRFDAIEDIMQRIKVEKLC--RF--SDGFFYNVIKIY 137 (404)
Q Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~~l~~~ 137 (404)
+....|+.++++.++...+...+ ..+.. .=..+.-+....|..+++..++......... .. .+........++
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~-s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSR-ASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSC-CSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccC-CCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 45566777778877777653210 12222 2223333344555555666666554332200 00 011111111111
Q ss_pred Hh---hcCCHHHHHHHHhhcccCCCCccHHHHH--HHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC
Q 015590 138 GN---MAGRISKAIETLFDMPSYNCWPSVKTFN--LVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENG 212 (404)
Q Consensus 138 ~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 212 (404)
.. -.++ +++.+.+..+....- +...... .+...+...|+.+....++..+.+.. .-+..-...+.-++.-.|
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCC
Confidence 11 1233 344444444433210 1111111 22233445667776777777666532 112222222333334567
Q ss_pred ChHHHHHHHHHchhCCCCCcHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 015590 213 NLEAAFYVLDEFPKQNCEPNVRTYS---TLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMK 289 (404)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 289 (404)
+.+.+..+.+.+.... .|. .-|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 7777777777776531 222 2233 23345666777777666777776542 1122222222333444566666666
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 015590 290 LLERMKGKGCYPNSASYQEVLYGLLDKKRF-PEAKELVGRMIC 331 (404)
Q Consensus 290 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 331 (404)
+++.+.+.+ .|....-..+.-+....|.. .++.+++..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666555543 33333333333344444443 567777777763
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.53 E-value=2.9e-05 Score=69.43 Aligned_cols=244 Identities=14% Similarity=0.109 Sum_probs=145.0
Q ss_pred CCccchhhcccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Q 015590 42 DSDHHAYKLNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEK 121 (404)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 121 (404)
.+....++.+.| ..|..+-.+..+.+...+|++-|-+. -|+..|..+|.+..+.|.+++..+.+...++..
T Consensus 43 Ra~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ 113 (624)
T 3lvg_A 43 RAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 113 (624)
T ss_dssp TTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC
T ss_pred HHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 333333444444 45778888888888888887755433 245567788999999999999888888765442
Q ss_pred cCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHH
Q 015590 122 LCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCL 201 (404)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 201 (404)
..+.+-..++.+|++ .++..+-.++ .. .||..-...+..-|...|.++.|.-+|..+.. |
T Consensus 114 ---ke~~IDteLi~ayAk-~~rL~elEef----l~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~ 173 (624)
T 3lvg_A 114 ---RESYVETELIFALAK-TNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------F 173 (624)
T ss_dssp ---CSTTTTHHHHHHHHT-SCSSSTTTST----TS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------C
T ss_pred ---cccccHHHHHHHHHh-hCcHHHHHHH----Hc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------H
Confidence 222333456666666 6665442222 21 27777777888888888888888777754432 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 015590 202 NILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQ 281 (404)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 281 (404)
.-|...+.+.|++..|.+. ..+ ..+..||..+-.+|...+.+.-|...--.+.-. || -...++..|...
T Consensus 174 akLAstLV~L~~yq~AVda---ArK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~ 242 (624)
T 3lvg_A 174 GRLASTLVHLGEYQAAVDG---ARK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDR 242 (624)
T ss_dssp TTTSSSSSSCSGGGSSTTT---TTT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHH---HHh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhC
Confidence 2333445556666655432 222 235567777777777777766655544443321 11 112345556677
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 015590 282 GKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVG 327 (404)
Q Consensus 282 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 327 (404)
|.+++-+.+++.-.... +.....|+-|.-.|++- ++++..+.++
T Consensus 243 G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 243 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp CCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 77777777776665332 34566666666666654 3444444443
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.35 E-value=8.4 Score=39.76 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcc
Q 015590 94 YTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMP 155 (404)
Q Consensus 94 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 155 (404)
...++..+.+.+..+.+.++...+. .++...+-....+.. .|++++|.+.|.+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~-~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLK-SKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHH-TTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHh-cCCHHHHHHHHHHHh
Confidence 3356777888888888888766542 233333444444554 999999999998763
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.30 E-value=4.6 Score=36.63 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhC--CCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCH--H
Q 015590 271 FNILISGLRKQGKVEEGMKLLERMKGK--GCYPN---SASYQEVLYGLLDKKRFPEAKELVGRMIC----ERMSPSF--V 339 (404)
Q Consensus 271 ~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~--~ 339 (404)
...|...|...|++.+|.+++.++... |.... ...+..-+..|...+++..|..++.++.. ....|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356788899999999999999998654 32221 35667778889999999999999988753 2222222 3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 015590 340 SYKKLIHGLCNQKLVEDVDWVLKKMVQQ 367 (404)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (404)
.+...+..+...+++.+|.+.|.+..+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5667778888899999998888877653
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.44 Score=46.20 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=71.1
Q ss_pred HHhhcCC-HHHHHHHHhhcccCCCCccHHHH--HHHHHHHHhcCc-HhHHHHHHHHHHHc------CCCC-CH-------
Q 015590 137 YGNMAGR-ISKAIETLFDMPSYNCWPSVKTF--NLVLNLLVSAKL-YGEIQGIYTSAAKL------GVEI-DA------- 198 (404)
Q Consensus 137 ~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~-~~~a~~~~~~~~~~------g~~~-~~------- 198 (404)
+....++ ++.|..+|+++...+ |...++ ..++..+...++ --+|.++..+..+. ..++ +.
T Consensus 257 ~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~ 334 (754)
T 4gns_B 257 FIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMN 334 (754)
T ss_dssp HHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccC
Confidence 3333555 577888888887754 433332 223333333322 22344444443321 1111 11
Q ss_pred ---hHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015590 199 ---CCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERM 259 (404)
Q Consensus 199 ---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 259 (404)
...+.=.+.+...|+++.|+++-++....- +-+-.+|-.|...|...|+++.|+-.++.+
T Consensus 335 ~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 335 CMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122222455667888888888888877664 556778999999999999999998888876
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.20 E-value=1.6 Score=42.35 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=40.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 015590 311 YGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKM 364 (404)
Q Consensus 311 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (404)
+.+...|+++-|+++-++.... .+-+..+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3355678888888888888765 2345678888888888888888888888766
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.98 E-value=0.39 Score=34.74 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=11.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 015590 309 VLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
|.-++.+.|++++|.+.++.+.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33345555555555555555544
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.84 E-value=0.82 Score=33.03 Aligned_cols=85 Identities=15% Similarity=0.071 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCChHHHH
Q 015590 284 VEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPE---AKELVGRMICERMSP--SFVSYKKLIHGLCNQKLVEDVD 358 (404)
Q Consensus 284 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~ 358 (404)
...+.+-|.+....|. |+..+--.+..++.+...... ++.++++..+.+ .| .....-.+.-++.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444555554444332 455555555555665554443 666666665542 12 1223333445667777777777
Q ss_pred HHHHHHHHCCCCCC
Q 015590 359 WVLKKMVQQGFVPR 372 (404)
Q Consensus 359 ~~~~~m~~~~~~p~ 372 (404)
+.++.+++ ++|+
T Consensus 95 ~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 95 KYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHH--HCTT
T ss_pred HHHHHHHH--hCCC
Confidence 77777763 4453
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.56 E-value=5.5 Score=41.12 Aligned_cols=143 Identities=9% Similarity=-0.006 Sum_probs=78.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC------------------
Q 015590 203 ILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGI------------------ 264 (404)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~------------------ 264 (404)
.++..+.+.+..+.+.++..... .+...--.+..+|...|++++|...|.+... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 34555556666666655544433 2222323344556666666666666654321 11
Q ss_pred -----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC-CC-CC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 015590 265 -----DADTVTFNILISGLRKQGKVEEGMKLLERMKGKG-CY-PN--SASYQEVLYGLLDKKRFPEAKELVGRMICERMS 335 (404)
Q Consensus 265 -----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~-p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 335 (404)
..-..-|..++..+.+.+.++.+.++-+...+.. .. ++ ...|..+.+.+...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 0011235667777777777777777766555431 11 11 12467777777777888888777776665432
Q ss_pred CCHHHHHHHHHHHHcCCC
Q 015590 336 PSFVSYKKLIHGLCNQKL 353 (404)
Q Consensus 336 p~~~~~~~li~~~~~~g~ 353 (404)
-......++..++..|.
T Consensus 970 -r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHhCCC
Confidence 23455555555554433
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.50 E-value=7.4 Score=36.92 Aligned_cols=115 Identities=10% Similarity=0.016 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 015590 248 NVEEAFGLLERMESEGIDADTVTF----NILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAK 323 (404)
Q Consensus 248 ~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 323 (404)
+.+.|...+........ .+.... ..+.......+...++...+....... ++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 67888888877764432 233222 222223333443455666666554432 23333333444445668888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 324 ELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 324 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
..|..|..... ....-.--+.+++...|+.++|..+|+.+.+
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88887754321 1233233355677778888888888888763
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.36 E-value=1.8 Score=38.54 Aligned_cols=67 Identities=10% Similarity=0.007 Sum_probs=35.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----CCCCCCHHh
Q 015590 308 EVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ-----QGFVPRMGM 375 (404)
Q Consensus 308 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 375 (404)
.++..+...|+.++|...+..+... -+.+...|..+|.++.+.|+..+|.+.|+.+.+ .|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444555555555555555555443 133555555556666666666666555555432 255555543
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.85 E-value=2.1 Score=29.29 Aligned_cols=50 Identities=14% Similarity=0.077 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 283 KVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++..+.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555555555556666666666666666666666666666665543
No 247
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.57 E-value=0.036 Score=50.08 Aligned_cols=219 Identities=14% Similarity=0.057 Sum_probs=138.2
Q ss_pred cccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHH
Q 015590 50 LNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGF 129 (404)
Q Consensus 50 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 129 (404)
+...|+..|..+|....+.|.+++-+..+.-. ++. ..++..=+.|+-+|++.+++.+.++++. .++...
T Consensus 78 IkA~Dps~y~eVi~~A~~~~~~edLv~yL~Ma-Rk~--~ke~~IDteLi~ayAk~~rL~elEefl~--------~~N~A~ 146 (624)
T 3lvg_A 78 IKADDPSSYMEVVQAANTSGNWEELVKYLQMA-RKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAH 146 (624)
T ss_dssp CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTT-STT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS--------CCSSSC
T ss_pred HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHH-HHH--hcccccHHHHHHHHHhhCcHHHHHHHHc--------CCCccc
Confidence 34578889999999999999999999887755 333 2334444589999999999887655432 244455
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcccCC--------------------CCccHHHHHHHHHHHHhcCcHhHHHHHHHHH
Q 015590 130 FYNVIKIYGNMAGRISKAIETLFDMPSYN--------------------CWPSVKTFNLVLNLLVSAKLYGEIQGIYTSA 189 (404)
Q Consensus 130 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 189 (404)
....-..++. .|.++.|.-+|..+..-. -..++.||-.+-.+|...+++..|.-.--.+
T Consensus 147 iq~VGDrcf~-e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLni 225 (624)
T 3lvg_A 147 IQQVGDRCYD-EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHI 225 (624)
T ss_dssp THHHHHHHHH-SCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHH
T ss_pred HHHHHHHHHH-ccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchh
Confidence 6666666776 888888888876553211 1245678999999999988888776554444
Q ss_pred HHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---
Q 015590 190 AKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDA--- 266 (404)
Q Consensus 190 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p--- 266 (404)
+-.. .-...++..|-..|-+++-..+++.-.... ......|+.|.-.|++- ++++..+-++....+=--|
T Consensus 226 Ivha-----deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvi 298 (624)
T 3lvg_A 226 VVHA-----DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVL 298 (624)
T ss_dssp HCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTH
T ss_pred cccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHH
Confidence 4221 122345666777777777777777655322 45666777777776664 4454444443322210011
Q ss_pred ----CHHHHHHHHHHHHcCCCHHHH
Q 015590 267 ----DTVTFNILISGLRKQGKVEEG 287 (404)
Q Consensus 267 ----~~~~~~~li~~~~~~g~~~~a 287 (404)
....|.-++-.|.+-.++|.|
T Consensus 299 racE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 299 RAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhcchhHHHH
Confidence 223455555556655555544
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.97 E-value=4 Score=31.00 Aligned_cols=70 Identities=9% Similarity=0.023 Sum_probs=48.8
Q ss_pred cccCCCCCHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCH-------HHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 015590 50 LNHKDWLSPTEVLKIFSNLRDPISVISVLNQYSKRKDYNPNE-------ALYTLIINKLAQAKRFDAIEDIMQRIKV 119 (404)
Q Consensus 50 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~ 119 (404)
.|+.+...+-.-++.+...+.++.|..+.+.+....+.+|+. .++..+.+++...|++.+|...|+...+
T Consensus 15 ~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 15 VPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 355566677777888999999999998888765543334442 3566777888999999999999998644
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.92 E-value=3.4 Score=28.30 Aligned_cols=76 Identities=11% Similarity=0.047 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhcC-CHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 015590 130 FYNVIKIYGNMAG-RISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLK 206 (404)
Q Consensus 130 ~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 206 (404)
+..--..+..+.. +.=+..+-++.+...++.|++....+.+++|.+.+++..|.++++-++..- .....+|..++.
T Consensus 11 F~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 11 FDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3333333443334 556677777777777778888888888888888888888888888776542 233445665553
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.65 E-value=4 Score=29.66 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015590 283 KVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLI 345 (404)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 345 (404)
+.-+..+-++.+....+.|++......+.+|.+.+++..|.++++-.+.+ ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34455555566666666677777777777777777777777777766654 233344455544
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.01 E-value=20 Score=35.80 Aligned_cols=258 Identities=10% Similarity=-0.021 Sum_probs=136.2
Q ss_pred HHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHH-HhhcCCHHHHHHHHhhcccCCC-------CccHHHHHHHHH
Q 015590 100 KLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIY-GNMAGRISKAIETLFDMPSYNC-------WPSVKTFNLVLN 171 (404)
Q Consensus 100 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~-------~p~~~~~~~ll~ 171 (404)
+....|+.+++..+++...... ...++..-...+.++ ...+|..+++..++.......- .+....-..+.-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~-~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGS-RASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTS-CCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhcccc-CCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3557788888877776543210 011122222222111 1124555567776666543210 011112222333
Q ss_pred HHHhcCc-HhHHHHHHHHHHHcCCCCCH--hHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC
Q 015590 172 LLVSAKL-YGEIQGIYTSAAKLGVEIDA--CCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN 248 (404)
Q Consensus 172 ~~~~~~~-~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 248 (404)
+++-.|. -+++.+.+..+.... .+.. ..--+|...+.-.|+-+....++..+.+.. .-+..-..++.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333332 234555555555432 1111 111233344556678777777877766532 1222223333444557889
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHH---HHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 015590 249 VEEAFGLLERMESEGIDADTV-TFN---ILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKE 324 (404)
Q Consensus 249 ~~~A~~~~~~m~~~~~~p~~~-~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 324 (404)
.+.+..+.+.+... .+.. -|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 99999998888764 2332 232 34456788899888888999988762 1122222333334445677777888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHH
Q 015590 325 LVGRMICERMSPSFVSYKKLIHGLCNQKLV-EDVDWVLKKMV 365 (404)
Q Consensus 325 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 365 (404)
+++.+.+.+ .|...--.++.-+....|.. .++..++..+.
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 887776643 45555444455555555553 67888888886
No 252
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.23 E-value=5.3 Score=27.21 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=36.4
Q ss_pred cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015590 178 LYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLE 257 (404)
Q Consensus 178 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 257 (404)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-++.. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34455555555544432 22222222334445555555555544444 455555555443 24555555555554
Q ss_pred HHHHC
Q 015590 258 RMESE 262 (404)
Q Consensus 258 ~m~~~ 262 (404)
++..+
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 55444
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.20 E-value=6.9 Score=28.46 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=47.9
Q ss_pred CHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 015590 143 RISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLK 206 (404)
Q Consensus 143 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 206 (404)
|.-+..+-++.+...++.|++......+++|.+.+++..|.++++-.+..- .+...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 555667777777777888999999999999999999999999998887653 334555666554
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.83 E-value=5.7 Score=27.12 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=35.2
Q ss_pred cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015590 178 LYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLE 257 (404)
Q Consensus 178 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 257 (404)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-++.. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34455555554444432 22222222333445555555555554444 455555554443 24455555555444
Q ss_pred HHHHC
Q 015590 258 RMESE 262 (404)
Q Consensus 258 ~m~~~ 262 (404)
++..+
T Consensus 94 ~la~s 98 (116)
T 2p58_C 94 RLARS 98 (116)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 44444
No 255
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=85.39 E-value=7.7 Score=32.00 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=8.9
Q ss_pred HHHHHhcCCchHHHHHHH
Q 015590 98 INKLAQAKRFDAIEDIMQ 115 (404)
Q Consensus 98 i~~~~~~~~~~~a~~~~~ 115 (404)
+...++.|+++....+++
T Consensus 9 L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 334455556555444443
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.92 E-value=7.2 Score=26.57 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLN 202 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 202 (404)
.|++++|..+.+.+- .||...|-.+-. .+.|..+++...+..+...| .|....|.
T Consensus 52 rG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 52 QGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp TTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred chhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 688888877776665 377777765543 46777777777776776666 44444443
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.78 E-value=8.5 Score=27.95 Aligned_cols=72 Identities=10% Similarity=-0.027 Sum_probs=36.3
Q ss_pred CCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH
Q 015590 300 YPNSASYQEVLYGLLDKKR---FPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRM 373 (404)
Q Consensus 300 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 373 (404)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+--+.-++.+.|++++|++..+.+. .++|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL--~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF--EHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhCCCC
Confidence 3444444444444444433 33556666665554311122333344456666666666666666666 445543
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.46 E-value=7.7 Score=26.50 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHH
Q 015590 141 AGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCL 201 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 201 (404)
.|++++|..+.+.+- .||...|-.+-. .+.|..+++...+..+...| .|....|
T Consensus 53 rG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 53 RGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp TTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred chhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 677777777777665 377777665543 36666666666666666655 4444444
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.05 E-value=3.3 Score=34.27 Aligned_cols=114 Identities=13% Similarity=0.161 Sum_probs=66.1
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHcC
Q 015590 276 SGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFV----SYKKLIHGLCNQ 351 (404)
Q Consensus 276 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~li~~~~~~ 351 (404)
....+.|++++++.....-.+.. +-|...-..++..+|-.|+++.|.+=++...+. .|+.. .|..+|++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH----
Confidence 34567788888888887777664 336677777888888888888888887777653 34432 33333332
Q ss_pred CChHHHHHHHHHHHHCCCCC-----CHHhHHHHHHhhc--cCCCCcchhhHHHhhhhh
Q 015590 352 KLVEDVDWVLKKMVQQGFVP-----RMGMWREIVGCVT--FGKDNRNRVYVTETVDSL 402 (404)
Q Consensus 352 g~~~~a~~~~~~m~~~~~~p-----~~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~ 402 (404)
+..=.++..-+-.| ...-...++.+.. ..|+.+.+..+.+...+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 12222222222222 2334455555444 356666666666655443
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.49 E-value=24 Score=30.04 Aligned_cols=167 Identities=10% Similarity=0.005 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHH----HHhhcccCCCCccHHHHHH
Q 015590 93 LYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIE----TLFDMPSYNCWPSVKTFNL 168 (404)
Q Consensus 93 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~m~~~~~~p~~~~~~~ 168 (404)
.|.++..-|.+.+++++|.+++..... .+.+ .|+...|-+ +.+-+.+.+++++......
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------~ll~-~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL----------------SFLK-AKQGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHH-TTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH----------------HHHH-CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 344566667777777777777655321 1122 344433333 2333444566777777777
Q ss_pred HHHHHHhcCcHh-HHHHHHHHHH----HcC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHH
Q 015590 169 VLNLLVSAKLYG-EIQGIYTSAA----KLG--VEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMH 241 (404)
Q Consensus 169 ll~~~~~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 241 (404)
++..+.....-+ .=.++.+.++ +.| ..-++.....+...|.+.|++.+|+..|-.-. .-|...+..++-
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~ 173 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLW 173 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHH
Confidence 776665532111 1122333333 222 12367788888999999999999888775221 124555555555
Q ss_pred HHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 015590 242 GLCEK---GNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMK 295 (404)
Q Consensus 242 ~~~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 295 (404)
-+... |...++--... ..+-.|.-.|+...|..+|+...
T Consensus 174 ~w~~~~~~~~~~e~dlf~~---------------RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 174 DWLCQVDDIEDSTVAEFFS---------------RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTCCCHHHHHHHHH---------------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcchHHHHHH---------------HHHHHHHHhcCHHHHHHHHHHHH
Confidence 44444 44443221111 12223455688888888887654
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.75 E-value=12 Score=27.08 Aligned_cols=67 Identities=16% Similarity=0.017 Sum_probs=35.0
Q ss_pred ccHHHHHHHHHHHHhcC---cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhC
Q 015590 161 PSVKTFNLVLNLLVSAK---LYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQ 227 (404)
Q Consensus 161 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 227 (404)
|+..+--...-++++.. +..+++.+++++.+.+..-.....--|.-++.+.|+++.|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 44444333444444444 23356666666665541122344445556666666666666666666554
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.25 E-value=14 Score=33.27 Aligned_cols=61 Identities=13% Similarity=-0.023 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 015590 235 TYSTLMHGLCEKGNVEEAFGLLERMESEGIDA--DTVTFNILISGLRKQGKVEEGMKLLERMK 295 (404)
Q Consensus 235 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 295 (404)
+...+...|.+.|++++|.+.|.++......+ -...+-..++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45556666777777777777777666542221 23345555666666666666666666554
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.25 E-value=24 Score=31.67 Aligned_cols=99 Identities=14% Similarity=-0.042 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHchhC--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHH--
Q 015590 199 CCLNILLKGLCENGNLEAAFYVLDEFPKQ--NCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMES---EGIDADTVTF-- 271 (404)
Q Consensus 199 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~-- 271 (404)
.+...+...|.+.|+++.|.+.|.++... +...-...+-..+..+...+++..+...+.+... .+..|+...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36778999999999999999999999864 2233456788889999999999999999988753 2322322211
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhC
Q 015590 272 NILISGLRKQGKVEEGMKLLERMKGK 297 (404)
Q Consensus 272 ~~li~~~~~~g~~~~a~~~~~~m~~~ 297 (404)
..-...+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11222234567777777777666544
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.12 E-value=35 Score=29.36 Aligned_cols=168 Identities=11% Similarity=0.001 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHH----HHhhcccCCCCccHHHHHH
Q 015590 93 LYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIE----TLFDMPSYNCWPSVKTFNL 168 (404)
Q Consensus 93 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~m~~~~~~p~~~~~~~ 168 (404)
+|.++..-|.+.+++++|.+++..-... +.+ .|+...|-+ +.+-+.+.++++|......
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~~----------------ll~-~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~r 99 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQT----------------LLR-SGQGGSGGDLAVLLVDTFRQAGQRVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHH-TTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHH----------------HHH-CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4456666788888888888877653211 111 233322222 2233333455566666556
Q ss_pred HHHHHHhcCcHh-HHHHHHHHHH----HcC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHH
Q 015590 169 VLNLLVSAKLYG-EIQGIYTSAA----KLG--VEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMH 241 (404)
Q Consensus 169 ll~~~~~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 241 (404)
++..+.....-+ .=..+.+.++ +.| ..-|......+...|.+.+++.+|+.-|- . |-.+....+..++-
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHH
Confidence 665554443211 1112222222 222 23466777888899999999999988873 2 22344466655555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 015590 242 GLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 296 (404)
-+...+...++ |...- ..+-.|...++...|..+++...+
T Consensus 176 ew~~~~~~~e~--------------dlfia-RaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 176 EWYKQDESHTA--------------PLYCA-RAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTSCGGGH--------------HHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCccH--------------HHHHH-HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444432221 11111 223335556788888877666543
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.38 E-value=17 Score=29.88 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=26.7
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 015590 60 EVLKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQR 116 (404)
Q Consensus 60 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 116 (404)
+.+...++.|+.+....+++.-. ......+..-+ +.+...+..|+.+-+..+++.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGW-TPLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTTCC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHHHHHHcCC-CcccccCCCCC-cHHHHHHHcCCHHHHHHHHHc
Confidence 44556677788776666555321 11111111112 344455666776655555543
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.06 E-value=41 Score=29.72 Aligned_cols=242 Identities=8% Similarity=0.043 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHhhcccC-CCCc---cHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHcCCCCCHhHH
Q 015590 127 DGFFYNVIKIYGNMAGRISKAIETLFDMPSY-NCWP---SVKTFNLVLNLLVSA-KLYGEIQGIYTSAAKLGVEIDACCL 201 (404)
Q Consensus 127 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p---~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~ 201 (404)
...+..+...+.. .|+.++..+++...... +.-| .......++..+... +..+.-.++..+..+.. ..+..+|
T Consensus 19 e~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~f 96 (394)
T 3txn_A 19 EQGILQQGELYKQ-EGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHH-HTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3445556666666 99999999999887541 1112 223466777777664 34444455555444332 1111222
Q ss_pred ------HHHHHHHHhcCChHHHHHHHHHchhCCCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH
Q 015590 202 ------NILLKGLCENGNLEAAFYVLDEFPKQNCEPN-----VRTYSTLMHGLCEKGNVEEAFGLLERMESE--GIDADT 268 (404)
Q Consensus 202 ------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~ 268 (404)
.-++..|...|++.+|.+++..+.+.=-..| ...|-.-+..|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 3578889999999999888888765311111 334666777888899999999888877532 222333
Q ss_pred HHHHH----HHHHHH-cCCCHHHHHHHHHHHhhC-CCCCChhh-----HHHHHHHHHhcCChhHHHHHHH-HHHHCCCCC
Q 015590 269 VTFNI----LISGLR-KQGKVEEGMKLLERMKGK-GCYPNSAS-----YQEVLYGLLDKKRFPEAKELVG-RMICERMSP 336 (404)
Q Consensus 269 ~~~~~----li~~~~-~~g~~~~a~~~~~~m~~~-~~~p~~~~-----~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~p 336 (404)
..... -...+. ..+++..|...|-+..+. . ...... .-.++.+.. .++..+.-.++. .....-..|
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~-~~~~~~~~~~lkYlvL~aLl-~~~r~el~~~l~~~~~~~~~~p 254 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD-SVDSVKALTSLKYMLLCKIM-LGQSDDVNQLVSGKLAITYSGR 254 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHH-TTCGGGHHHHHHSHHHHTTCSH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHHHHH-cCCHHHHHHHhccccccccCCc
Confidence 33221 123345 688899988888776432 1 111111 111122222 233333333332 211111245
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 015590 337 SFVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMG 374 (404)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 374 (404)
+...+..++.+|. .+++.+...+++.... .+..|..
T Consensus 255 ei~~l~~L~~a~~-~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 255 DIDAMKSVAEASH-KRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred cHHHHHHHHHHHH-hCCHHHHHHHHHHHHH-HHhcChH
Confidence 5555666666544 5567776666665432 3455554
No 267
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.41 E-value=24 Score=26.72 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=12.2
Q ss_pred HHHHHHhcCChHHHHHHHHHch
Q 015590 204 LLKGLCENGNLEAAFYVLDEFP 225 (404)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~~~ 225 (404)
+..+|.+.+++++|..+++.+.
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHCCHHHHHHHHhcCC
Confidence 4455555555555555555554
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.02 E-value=34 Score=28.29 Aligned_cols=122 Identities=9% Similarity=-0.008 Sum_probs=73.6
Q ss_pred HHHHhcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhc
Q 015590 62 LKIFSNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMA 141 (404)
Q Consensus 62 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (404)
+..+.+.|++++|+.....-++.. +-|...-..++..+|-.|++++|.+-++...+.. |.......+...... +
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~---p~~~~~a~~yr~lI~-a 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF---PEYLPGASQLRHLVK-A 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHH-H
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---chhhHHHHHHHHHHH-H
Confidence 345677899999999998888765 6677778889999999999999999998877654 222211111122211 1
Q ss_pred CCHHHH-HHHHhhcccCCC-CccHHHHHHHHHHHH--hcCcHhHHHHHHHHHHHc
Q 015590 142 GRISKA-IETLFDMPSYNC-WPSVKTFNLVLNLLV--SAKLYGEIQGIYTSAAKL 192 (404)
Q Consensus 142 g~~~~A-~~~~~~m~~~~~-~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 192 (404)
+.. .++|.-=..-++ .....-...++.+.. ..|+.++|.++-.++.+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 111 122221111001 111223344555443 468999999888888665
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.23 E-value=24 Score=26.01 Aligned_cols=65 Identities=11% Similarity=0.008 Sum_probs=30.0
Q ss_pred CChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015590 301 PNSASYQEVLYGLLDKKR---FPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMV 365 (404)
Q Consensus 301 p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (404)
|+..+--.+..++.+... ..+++.+++++.+.+..-.....-.+.-++.+.|++++|+++.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444444444433 23455555555543211112222233445556666666666666655
No 270
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=69.26 E-value=34 Score=27.13 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=8.2
Q ss_pred HHhcCChHHHHHHHHHc
Q 015590 208 LCENGNLEAAFYVLDEF 224 (404)
Q Consensus 208 ~~~~g~~~~a~~~~~~~ 224 (404)
.+..|+.+-+..+++..
T Consensus 86 A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHTTCHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHcC
Confidence 34455555555444443
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.07 E-value=33 Score=25.21 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 015590 265 DADTVTFNILISGLRKQGK---VEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE 332 (404)
Q Consensus 265 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (404)
.|+..+--.+..++.+..+ ..++..+++++.+.+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444444444455555443 3356666666665422112334444555677777777777777777663
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.83 E-value=42 Score=26.33 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 015590 249 VEEAFGLLERMESEGIDAD-TVTFNILISGLRKQGKVEEGMKLLERMKGKGCYP 301 (404)
Q Consensus 249 ~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 301 (404)
..++.++|..|..+|+.-. ...|......+...|++.+|..+|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555544443322 2234444444445555555555555555444444
No 273
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=67.71 E-value=56 Score=27.69 Aligned_cols=279 Identities=14% Similarity=0.053 Sum_probs=122.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCH---H-HHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHH
Q 015590 59 TEVLKIFSNLRDPISVISVLNQYSKRKDYNPNE---A-LYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVI 134 (404)
Q Consensus 59 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 134 (404)
++++-..++.|+.+.+..+++. |..++. . -++. +...+..|+.+-+.-+++.-.... ..+......+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~-----Gadvn~~~~~~g~Tp-Lh~A~~~g~~~iv~~Ll~~ga~~~---~~~~~~~~~~ 96 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG-----GANVNFQEEEGGWTP-LHNAVQMSREDIVELLLRHGADPV---LRKKNGATPF 96 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----TCCTTCCCTTTCCCH-HHHHHHTTCHHHHHHHHHTTCCTT---CCCTTCCCHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC-----CCCCCccCCCCCcCH-HHHHHHcCCHHHHHHHHHcCCchh---hhccCCCchh
Confidence 4455556778888877776654 222221 1 1223 334456777765555554321110 1111111112
Q ss_pred HHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhH------------HH
Q 015590 135 KIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACC------------LN 202 (404)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~------------~~ 202 (404)
..... .+.......+...-...+. .|..-++. +...+..|..+-+.. +.+.|..++... -.
T Consensus 97 ~~~~~-~~~~~~~~~~~~~~~~~~~-~d~~g~t~-l~~A~~~~~~~~~~~----ll~~ga~~~~~~~~~~~~~~~~~~g~ 169 (337)
T 4g8k_A 97 ILAAI-AGSVKLLKLFLSKGADVNE-CDFYGFTA-FMEAAVYGKVKALKF----LYKRGANVNLRRKTKEDQERLRKGGA 169 (337)
T ss_dssp HHHHH-HTCHHHHHHHHTTTCCTTC-BCTTCCBH-HHHHHHTTCHHHHHH----HHHTTCCTTCCCCCC-----CTTCSC
T ss_pred HHHHh-cccchhhHHhhhccchhhh-hccCCCCH-HHHHHHcCcHHHHHH----HHHcCCCcchhhccccccccccCCCC
Confidence 22222 4555555444443322111 12211222 223345555554433 334443322100 01
Q ss_pred HHHHHHHhcCChHHHHHHHHHchhCCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHH
Q 015590 203 ILLKGLCENGNLEAAFYVLDEFPKQNCEP---NVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTV---TFNILIS 276 (404)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~li~ 276 (404)
+-+...+..|+.+-+..++++. |..+ |....+.+..+... +.......+.+-+.+.|..++.. -.+. +.
T Consensus 170 T~L~~A~~~g~~~~v~~LL~~~---gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~-L~ 244 (337)
T 4g8k_A 170 TALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTP-LI 244 (337)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHS---CCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCH-HH
T ss_pred cHHHHHHHCCCHHHHHHHHhcc---CCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCH-HH
Confidence 1233445678877766666542 2222 22222233333222 22222333444556677655432 2233 33
Q ss_pred HHHcCCCHHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 015590 277 GLRKQGKVEEGMKLLERMKGKGCYP---NSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKL 353 (404)
Q Consensus 277 ~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 353 (404)
..+..|+.+.+..++.. .|..+ |..-.+.|..+ ++.|+.+ +.+.+.+.|..+|..+ .+..-++.|+
T Consensus 245 ~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~ 313 (337)
T 4g8k_A 245 LAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD---LVMTARRNYD 313 (337)
T ss_dssp HHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTC
T ss_pred HHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCC
Confidence 44567777766555432 23222 22223344433 4556654 4445566676666543 2333445666
Q ss_pred hHHHHHHHHHHHHCCCCCCH
Q 015590 354 VEDVDWVLKKMVQQGFVPRM 373 (404)
Q Consensus 354 ~~~a~~~~~~m~~~~~~p~~ 373 (404)
. ++.+.+++.|-.||.
T Consensus 314 ~----~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 314 H----SLVKVLLSHGAKEDF 329 (337)
T ss_dssp H----HHHHHHHHTTCCC--
T ss_pred H----HHHHHHHHCcCCCCC
Confidence 5 355666777877764
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.15 E-value=44 Score=26.25 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=37.6
Q ss_pred cCcHhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCC
Q 015590 176 AKLYGEIQGIYTSAAKLGVEI-DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEP 231 (404)
Q Consensus 176 ~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 231 (404)
.+...+..++|..|...|+-. -...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334557777777777776543 34556667777777777777777777777665555
No 275
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=65.56 E-value=63 Score=27.47 Aligned_cols=168 Identities=13% Similarity=0.056 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH----HHHHchhCCCCCcHHHHHHHH
Q 015590 165 TFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFY----VLDEFPKQNCEPNVRTYSTLM 240 (404)
Q Consensus 165 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~li 240 (404)
+|.++..-|.+.+++++|++++..-- ..+.+.|+...|-+ +.+-..+.+++++.....-++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44555556666666666666654322 11223344333322 344444556666666666666
Q ss_pred HHHHHcCCHH-HHHHHHHHH----HHCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 015590 241 HGLCEKGNVE-EAFGLLERM----ESEGI--DADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGL 313 (404)
Q Consensus 241 ~~~~~~~~~~-~A~~~~~~m----~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 313 (404)
..+......+ .=.++.+++ .+.|- .-|+.....+...|.+.|++.+|+.-|- .|-.-+...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHH
Confidence 5554432111 112222222 22221 1244445555555666666666555443 11000233444443333
Q ss_pred Hhc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 314 LDK---KRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 314 ~~~---g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
... |...++ +...-.+++ -|...|+...|..+++...+
T Consensus 176 ~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 176 LCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 332 222221 112222233 34567889999999887753
No 276
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=64.94 E-value=40 Score=26.71 Aligned_cols=185 Identities=12% Similarity=0.099 Sum_probs=86.1
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHcCCCCCHhH--HHHHHHHHHhcCChHHHHHHHHHchhCCCCCcH---HHHHHHHHHHH
Q 015590 170 LNLLVSAKLYGEIQGIYTSAAKLGVEIDACC--LNILLKGLCENGNLEAAFYVLDEFPKQNCEPNV---RTYSTLMHGLC 244 (404)
Q Consensus 170 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~ 244 (404)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++ .|..++. .-++. +...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~-l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT----AGASPMALDRHGQTA-AHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCH-HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCH-HHHHH
Confidence 3345566777777777776666655443221 1233444556777665554444 3333322 22223 33445
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhh---HHHHHHHHHhcCC
Q 015590 245 EKGNVEEAFGLLERMESEGIDA---DTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSAS---YQEVLYGLLDKKR 318 (404)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~ 318 (404)
..|+.+-+..+++.....++.+ +....+.+. ..+..|+.+-...++ +.|..++... -.+.+...+..|+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQETVQLLL----ERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH-HHHHHTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcHHH-HHHHcCCHHHHHHHH----HcCCCcccccccCCCcHHHHHHHcCC
Confidence 6777776665555433211122 222223333 334556665444444 4444433211 1223344456676
Q ss_pred hhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 015590 319 FPEAKELVGRMICERMSPSFVS--YKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPR 372 (404)
Q Consensus 319 ~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 372 (404)
.+-+. .+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..|+
T Consensus 163 ~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 163 LSMVQ----LLLQHGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp HHHHH----HHHHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 55444 4444454443211 112233334556654 4445555666654
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=63.94 E-value=49 Score=25.69 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=20.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC
Q 015590 197 DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN 248 (404)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 248 (404)
+..+-...+.++.+.++.+....+.+.+. .++...-...+.++.+.++
T Consensus 63 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDERAVEPLIKALK----DEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCc
Confidence 44444444445555554333322222222 2344444444555555554
No 278
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=63.03 E-value=46 Score=25.05 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHH
Q 015590 199 CCLNILLKGLCENGNLEAAFYVLD 222 (404)
Q Consensus 199 ~~~~~li~~~~~~g~~~~a~~~~~ 222 (404)
.++.-++..+.+...+-.....|+
T Consensus 157 i~~~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 157 VTLDEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp ECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred EeHHHHHHHHhcChHHHHHHHHhh
Confidence 444445554444444444444443
No 279
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=62.37 E-value=50 Score=25.22 Aligned_cols=13 Identities=31% Similarity=0.215 Sum_probs=7.7
Q ss_pred cCCHHHHHHHHhh
Q 015590 141 AGRISKAIETLFD 153 (404)
Q Consensus 141 ~g~~~~A~~~~~~ 153 (404)
.|+.+....++..
T Consensus 15 ~g~~~~v~~ll~~ 27 (201)
T 3hra_A 15 QRDTKKVKEILQD 27 (201)
T ss_dssp TTCHHHHHHHHTC
T ss_pred hccHHHHHHHHHc
Confidence 5666666666554
No 280
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=62.29 E-value=62 Score=26.27 Aligned_cols=150 Identities=6% Similarity=0.011 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhhC-CCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHH
Q 015590 72 ISVISVLNQYSKR-KDYNPNEALYTLIINKLAQAK-RFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIE 149 (404)
Q Consensus 72 ~~a~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 149 (404)
++...+|+..... ..-.-+...+..++..+...+ .-..+..+|..+-..+....+-.-+..++..... ....++...
T Consensus 91 ~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~-~~~~~~l~~ 169 (256)
T 2jul_A 91 KELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLR-GTVHEKLKW 169 (256)
T ss_dssp HHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHS-CCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhc-cChHHHHHH
Confidence 4455555554332 111234444555554443222 2345777888775444333344445555554443 344566777
Q ss_pred HHhhcccCC-CCccHHHHHHHHHHHHh-cC-----------cHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 015590 150 TLFDMPSYN-CWPSVKTFNLVLNLLVS-AK-----------LYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEA 216 (404)
Q Consensus 150 ~~~~m~~~~-~~p~~~~~~~ll~~~~~-~~-----------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 216 (404)
+|+.+-..| -..+..-+..++..+.. .| ..+.+..+|..+-..| ....++.-++..+.+...+-+
T Consensus 170 ~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~ 247 (256)
T 2jul_A 170 AFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMN 247 (256)
T ss_dssp HHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHH
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHH
Confidence 787765432 12444444444444321 13 3345666666553332 234678888888888888888
Q ss_pred HHHHHHHc
Q 015590 217 AFYVLDEF 224 (404)
Q Consensus 217 a~~~~~~~ 224 (404)
+...|+.+
T Consensus 248 ~l~~~d~~ 255 (256)
T 2jul_A 248 SMQLFENV 255 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHhhccc
Confidence 88888764
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.84 E-value=49 Score=24.63 Aligned_cols=68 Identities=6% Similarity=-0.087 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCC
Q 015590 126 SDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEI 196 (404)
Q Consensus 126 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 196 (404)
+|.-+..+-..|.....+ +.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 66 nD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 66 NDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp TCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344455555555443333 5566666655544333 2345556666666667777777766666665444
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.97 E-value=58 Score=24.24 Aligned_cols=72 Identities=8% Similarity=0.013 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCcc
Q 015590 87 YNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPS 162 (404)
Q Consensus 87 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 162 (404)
..-|+.-....|...-. .+.+.++|..|...+ .+..-..++.....++...|++.+|.++|+.-.+.+-.|-
T Consensus 64 YknD~RyLklWl~ya~~---~~dp~~if~~L~~~~-IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEY---NSDLHQFFEFLYNHG-IGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp GTTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTT-TTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 45566655555543222 345889999998777 4455666777777777779999999999998887776664
No 283
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=55.62 E-value=54 Score=25.02 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=8.1
Q ss_pred HHHHHHHHHCCCCCC
Q 015590 358 DWVLKKMVQQGFVPR 372 (404)
Q Consensus 358 ~~~~~~m~~~~~~p~ 372 (404)
.++.+.+.+.|..|+
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 455555555555544
No 284
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.91 E-value=82 Score=25.96 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=7.3
Q ss_pred HcCCCHHHHHHHHHH
Q 015590 279 RKQGKVEEGMKLLER 293 (404)
Q Consensus 279 ~~~g~~~~a~~~~~~ 293 (404)
+..|+.+-+..+++.
T Consensus 169 ~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 169 IKNGHVDMMILLLDY 183 (285)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcChHHHHHHHHHc
Confidence 445555554444443
No 285
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=54.10 E-value=48 Score=24.94 Aligned_cols=71 Identities=8% Similarity=0.134 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--ccCCCChHHHHHHHHHHHhhcCCH
Q 015590 71 PISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVE--KLCRFSDGFFYNVIKIYGNMAGRI 144 (404)
Q Consensus 71 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~ 144 (404)
.+.+++-+.+.++..|++.+..- ..++..+...+..-.|.++++.+... + ...+..++|..+..+.. .|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~-~~is~aTVYRtL~~L~e-~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPD-LNVGIATVYRTLNLLEE-AEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGG-GCCCHHHHHHHHHHHHH-TTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHH-CCCE
Confidence 46777788888888888887654 45667777777888899999998765 4 34567788888888776 5543
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=52.99 E-value=29 Score=28.85 Aligned_cols=114 Identities=8% Similarity=-0.058 Sum_probs=52.0
Q ss_pred HHHHHHhcCChHHHHHHHHHchhCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHH
Q 015590 204 LLKGLCENGNLEAAFYVLDEFPKQNCEPN---VRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTV---TFNILISG 277 (404)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~ 277 (404)
.+...+..|+.+-+..+++. |..++ ..-++.+. ..+..|+.+-+..+++. |..++.. .+.+.+..
T Consensus 65 ~L~~A~~~g~~~~v~~Ll~~----ga~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~ 135 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILLFS----GLDDSQFDDKGNTALY-YAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYH 135 (285)
T ss_dssp HHHHHTTSSSCHHHHHHHHT----TCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHC----CCCCCCcCCCCCcHHH-HHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHH
Confidence 34445556666655554443 32222 22223333 33456666544444433 4333322 22234444
Q ss_pred HHcCCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015590 278 LRKQGKVEEGMKLLERMKGKGCYP-NSASYQEVLYGLLDKKRFPEAKELVGRMI 330 (404)
Q Consensus 278 ~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (404)
.+..|+.+-+..+ .+.|..+ +...-.+.+...+..|..+-+.-+++.-.
T Consensus 136 A~~~~~~~~v~~L----l~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 136 AVMLNDVSIVSYF----LSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp HHHTTCHHHHHHH----HTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHH----HhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCC
Confidence 5566776544433 3443332 22122334444566777776666665533
No 287
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.01 E-value=40 Score=26.58 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=6.4
Q ss_pred cCCHHHHHHHHh
Q 015590 141 AGRISKAIETLF 152 (404)
Q Consensus 141 ~g~~~~A~~~~~ 152 (404)
.|+.+....+++
T Consensus 19 ~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 19 YGIYERCRELVE 30 (240)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCChHHHHHHHH
Confidence 566555555544
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.93 E-value=78 Score=23.91 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCcc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCH
Q 015590 126 SDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDA 198 (404)
Q Consensus 126 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 198 (404)
++.-+..+-..|...+++ +.++|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 61 nD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 61 SDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp TCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 444555555555554433 5556666666554433 345666666677777777777777777777655544
No 289
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=49.48 E-value=1.3e+02 Score=25.92 Aligned_cols=191 Identities=13% Similarity=0.060 Sum_probs=91.4
Q ss_pred CCHHHHHHHHhhcccCCCC---cc-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 015590 142 GRISKAIETLFDMPSYNCW---PS-VKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAA 217 (404)
Q Consensus 142 g~~~~A~~~~~~m~~~~~~---p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a 217 (404)
+.+++.++-++.-.+.|-- =. ..+|.++..-|.+.+++++|++++..- ...+.+.|+...|
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg 74 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSG 74 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchH
Confidence 4455555555555554411 01 124555555566666666666554322 1234445665444
Q ss_pred HHH----HHHchhCCCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHcCCCHHH
Q 015590 218 FYV----LDEFPKQNCEPNVRTYSTLMHGLCEKGNVE-EAFGLLERME----SEG--IDADTVTFNILISGLRKQGKVEE 286 (404)
Q Consensus 218 ~~~----~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~A~~~~~~m~----~~~--~~p~~~~~~~li~~~~~~g~~~~ 286 (404)
-++ .+-..+.++++|.....-++..+......+ .=..+.+++. +.| ..-|+..-..+...|.+.+++.+
T Consensus 75 ~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~ 154 (336)
T 3lpz_A 75 GDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEA 154 (336)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 333 344455666677666666666655544311 1122222221 112 22244444555666666666666
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 015590 287 GMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKMVQ 366 (404)
Q Consensus 287 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (404)
|+.-|- . |..+....|..++.-+...+...+ ++...-.+++ -|...++...|..+++...+
T Consensus 155 Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 155 AEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 666552 1 222223455444444443332222 2222233333 34556788888888777664
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.02 E-value=71 Score=22.90 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHhhCC
Q 015590 237 STLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGK--VEEGMKLLERMKGKG 298 (404)
Q Consensus 237 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~ 298 (404)
+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+...|
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 44555555666666666666655321111 12223333334443321 234555555555443
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.80 E-value=80 Score=23.44 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 015590 237 STLMHGLCEKGNVEEAFGLLERME 260 (404)
Q Consensus 237 ~~li~~~~~~~~~~~A~~~~~~m~ 260 (404)
+.++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555556666666666666553
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.42 E-value=96 Score=25.03 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=16.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 015590 97 IINKLAQAKRFDAIEDIMQRIKV 119 (404)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~~ 119 (404)
-++.+...++|++|.+++++...
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45667777888888888877643
No 293
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=47.69 E-value=91 Score=23.78 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=11.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC
Q 015590 244 CEKGNVEEAFGLLERMESEGIDAD 267 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~p~ 267 (404)
+..|+.+.-.++.+.+.+.|..++
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHcCCcchHHHHHHHHHHCCCCCC
Confidence 334444444444555555554443
No 294
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=46.78 E-value=1.5e+02 Score=26.10 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcccCCCC----hHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHH---
Q 015590 94 YTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFS----DGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTF--- 166 (404)
Q Consensus 94 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--- 166 (404)
...|...|.+.|+.++..+++.....-- ...+ ...+.+++..+....+..+.-.++..+..+-. .-...+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFL-SSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGG-GGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3456666777777777666666542211 0011 12334455555443444444444444433210 0011223
Q ss_pred ---HHHHHHHHhcCcHhHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHHchhC--CC--CCcHH
Q 015590 167 ---NLVLNLLVSAKLYGEIQGIYTSAAKLGVEID-----ACCLNILLKGLCENGNLEAAFYVLDEFPKQ--NC--EPNVR 234 (404)
Q Consensus 167 ---~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~--~~~~~ 234 (404)
.-++..|...|++.+|..++..+.+.=-..| ..++-.-+..|...+++.++...+...... .+ +|...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 1456677777777777777776665311111 234555566677777777777777655432 11 22222
Q ss_pred HHHHHH--HHHH-HcCCHHHHHHHHHHH
Q 015590 235 TYSTLM--HGLC-EKGNVEEAFGLLERM 259 (404)
Q Consensus 235 ~~~~li--~~~~-~~~~~~~A~~~~~~m 259 (404)
..--.. ..+. ..+++..|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 111111 2234 567777777766554
No 295
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=45.21 E-value=60 Score=25.74 Aligned_cols=69 Identities=16% Similarity=0.034 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHhhccCCCC
Q 015590 319 FPEAKELVGRMICERMSPSFV-------SYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVPRMGMWREIVGCVTFGKDN 389 (404)
Q Consensus 319 ~~~a~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 389 (404)
++.|+.+|+.+.+.-..++.. .--..+-.|.+.|.+++|.+++++.. +-.|+..-...-+....+.++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~--~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM--SKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh--cCCCCchHHHHHHHHHHhccCc
No 296
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.67 E-value=70 Score=25.57 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCC
Q 015590 181 EIQGIYTSAAKLGVEI-DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEP 231 (404)
Q Consensus 181 ~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 231 (404)
....+|..|...|+-. -...|......+...|++.+|..+|+.-.+.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555554432 23344455555555555555555555555444333
No 297
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=43.98 E-value=1.6e+02 Score=25.55 Aligned_cols=71 Identities=10% Similarity=0.120 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHh-hcCCHHHHHHHHhhcccCCCCccHHHHH
Q 015590 93 LYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGN-MAGRISKAIETLFDMPSYNCWPSVKTFN 167 (404)
Q Consensus 93 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 167 (404)
....+|.-|...++.++|...++.+.... ........++..... +...-+.+-.++..+.. ++-+......
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~---~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~ 127 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE---MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEK 127 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCG---GGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCch---hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 35566777777888888888777764221 122333333333332 12233445666666663 4333333333
No 298
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.09 E-value=16 Score=29.80 Aligned_cols=53 Identities=17% Similarity=0.076 Sum_probs=27.7
Q ss_pred HHHhcCcHhHHHHHHHHHHHcCCCCCHhH-------HHHHHHHHH--hcCChHHHHHHHHHc
Q 015590 172 LLVSAKLYGEIQGIYTSAAKLGVEIDACC-------LNILLKGLC--ENGNLEAAFYVLDEF 224 (404)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~~~--~~g~~~~a~~~~~~~ 224 (404)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34456677766666666666655444222 223333321 456666666655543
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.89 E-value=54 Score=26.20 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 015590 321 EAKELVGRMICERMSPS-FVSYKKLIHGLCNQKLVEDVDWVLKKMVQQGFVP 371 (404)
Q Consensus 321 ~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 371 (404)
.+.++|..|...|+-.. ...|......+...|++++|..+|+.-++.+-+|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44445555544443222 2233344444444555555555555554444444
No 300
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.62 E-value=1.2e+02 Score=23.22 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=20.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCH
Q 015590 197 DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNV 249 (404)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 249 (404)
+..+-...+.++.+.|+.+....+.+.+. .++...-...+.++.+.++.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLIKALK----DEDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCcH
Confidence 33344444444444444333322322222 23444444444455554443
No 301
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.17 E-value=94 Score=23.28 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=28.8
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHcCCCh
Q 015590 298 GCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICE--RMSPSFVSYKKLIHGLCNQKLV 354 (404)
Q Consensus 298 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~ 354 (404)
|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 28 g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 28 GLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp TCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 5554432 233444555555555666666666554 4444555544455555555543
No 302
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.04 E-value=98 Score=22.25 Aligned_cols=42 Identities=7% Similarity=0.050 Sum_probs=19.0
Q ss_pred HHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 015590 311 YGLLDKK-RFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQK 352 (404)
Q Consensus 311 ~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 352 (404)
..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 25 ~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 25 QMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3333333 44455555555555444444444444444444444
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.44 E-value=65 Score=23.96 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 015590 201 LNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN--VEEAFGLLERMESEGID 265 (404)
Q Consensus 201 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~ 265 (404)
.+.++.-|...|+.++|.+.++++.... -....+..++..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4566777777777777777777775211 1122334444444444322 34566667666666543
No 304
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=40.40 E-value=94 Score=22.72 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=29.6
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 015590 294 MKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKL 353 (404)
Q Consensus 294 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 353 (404)
+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 344455555432 22333344444 55666666666655545555555545555555554
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.07 E-value=1.5e+02 Score=23.96 Aligned_cols=87 Identities=8% Similarity=0.029 Sum_probs=40.0
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHc--CCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHH
Q 015590 170 LNLLVSAKLYGEIQGIYTSAAKL--GVEI----DACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGL 243 (404)
Q Consensus 170 l~~~~~~~~~~~a~~~~~~~~~~--g~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 243 (404)
++.+....++++|.++.++..+. ++++ +.......+..-.....-.-+..+.+++.. ..+...-...+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 44555566666666665554432 1111 111222222222222223333334444422 33444455556666
Q ss_pred HHcCCHHHHHHHHHHH
Q 015590 244 CEKGNVEEAFGLLERM 259 (404)
Q Consensus 244 ~~~~~~~~A~~~~~~m 259 (404)
.+.|+.++|.++|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 7777777777776544
No 306
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.51 E-value=1.2e+02 Score=22.36 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=17.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 015590 318 RFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKL 353 (404)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 353 (404)
..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 344455555555554444444444444444444443
No 307
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.09 E-value=1.3e+02 Score=22.72 Aligned_cols=50 Identities=6% Similarity=0.151 Sum_probs=24.1
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 015590 252 AFGLLERMESEGIDAD-TVTFNILISGLRKQGKVEEGMKLLERMKGKGCYP 301 (404)
Q Consensus 252 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 301 (404)
+.++|..|..+|+.-. ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4445555555544322 2234444444555555555555555555554444
No 308
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=38.04 E-value=77 Score=20.18 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 015590 319 FPEAKELVGRMICERMSPSFVSYKKLIHGLCNQK 352 (404)
Q Consensus 319 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 352 (404)
.-.+.++++.+.+.+...+..|....++.+...|
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344445554444433334444444444444443
No 309
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=37.99 E-value=1.3e+02 Score=23.50 Aligned_cols=53 Identities=6% Similarity=-0.111 Sum_probs=26.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 015590 311 YGLLDKKRFPEAKELVGRMICERMSP---------SFVSYKKLIHGLCNQKLVEDVDWVLKKM 364 (404)
Q Consensus 311 ~~~~~~g~~~~a~~~~~~~~~~~~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (404)
...+..|+.+.+..+++.+.+.|..+ |..-.+. +...+..|+.+-+..+++.-
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcC
Confidence 33455666666666666666655322 2222222 33334556665555555443
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.45 E-value=1.2e+02 Score=22.13 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=33.9
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 015590 294 MKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLV 354 (404)
Q Consensus 294 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 354 (404)
+.+.|.+++..= ..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 445566655432 334444445555666777777776665555666655556666665543
No 311
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.44 E-value=1.4e+02 Score=23.12 Aligned_cols=12 Identities=17% Similarity=0.551 Sum_probs=5.0
Q ss_pred cCCHHHHHHHHh
Q 015590 141 AGRISKAIETLF 152 (404)
Q Consensus 141 ~g~~~~A~~~~~ 152 (404)
.|+.+....++.
T Consensus 16 ~g~~~~v~~ll~ 27 (231)
T 3aji_A 16 SGKLDELKERIL 27 (231)
T ss_dssp HTCHHHHHHHHH
T ss_pred hCCHHHHHHHHH
Confidence 344444444443
No 312
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.84 E-value=2e+02 Score=24.62 Aligned_cols=13 Identities=0% Similarity=-0.128 Sum_probs=9.0
Q ss_pred HhHHHHHHhhccC
Q 015590 374 GMWREIVGCVTFG 386 (404)
Q Consensus 374 ~~~~~ll~~~~~~ 386 (404)
..|.-++..|...
T Consensus 273 ~~~~pll~~~~~~ 285 (339)
T 1ug3_A 273 KARAKLLQKYLCD 285 (339)
T ss_dssp HHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCC
Confidence 3577888888743
No 313
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.83 E-value=1.6e+02 Score=25.27 Aligned_cols=23 Identities=9% Similarity=0.249 Sum_probs=11.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHch
Q 015590 203 ILLKGLCENGNLEAAFYVLDEFP 225 (404)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~~~~~ 225 (404)
.++.-|...|+.++|.+.++++.
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC
Confidence 34445555555555555555553
No 314
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.72 E-value=1.3e+02 Score=23.35 Aligned_cols=20 Identities=5% Similarity=-0.107 Sum_probs=9.2
Q ss_pred HcCCCHHHHHHHHHHHhhCC
Q 015590 279 RKQGKVEEGMKLLERMKGKG 298 (404)
Q Consensus 279 ~~~g~~~~a~~~~~~m~~~~ 298 (404)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 34445554444444444443
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.61 E-value=1.3e+02 Score=22.52 Aligned_cols=52 Identities=8% Similarity=-0.025 Sum_probs=31.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHcCCCHHHHHHHHHHHhh
Q 015590 245 EKGNVEEAFGLLERMESEGIDA--DTVTFNILIS-G-----LRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 296 (404)
..|++-+|.++++........+ +...|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777776654444 4445555555 1 2346777777777776654
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.29 E-value=1.3e+02 Score=22.15 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=32.4
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 015590 294 MKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLV 354 (404)
Q Consensus 294 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 354 (404)
+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 44556554432 2334455555555666777777776655555665555555666665543
No 317
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=36.28 E-value=1.2e+02 Score=22.04 Aligned_cols=61 Identities=10% Similarity=0.249 Sum_probs=37.7
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCC
Q 015590 79 NQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGR 143 (404)
Q Consensus 79 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 143 (404)
.+.++..|++++..-. .++..+...+ .-.|.++++.+.+.+ ...+..++|..+..+.. .|-
T Consensus 7 ~~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~-~~is~~TVYR~L~~L~e-~Gl 67 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTA-SGINISTVYRTLELLEE-LGL 67 (145)
T ss_dssp HHHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTC-TTCCHHHHHHHHHHHHH-HTS
T ss_pred HHHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhC-CCCCHhHHHHHHHHHHH-CCc
Confidence 3445667777766533 3444555555 667888888886554 34556777777777766 443
No 318
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.45 E-value=2.2e+02 Score=24.69 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHH
Q 015590 59 TEVLKIFSNLRDPISVISVLNQY 81 (404)
Q Consensus 59 ~~li~~~~~~~~~~~a~~~~~~~ 81 (404)
..+|.-|...++.++|...++.+
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL 80 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDL 80 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 35566666666666666666655
No 319
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=35.18 E-value=1.6e+02 Score=22.98 Aligned_cols=15 Identities=13% Similarity=-0.123 Sum_probs=6.1
Q ss_pred cCCChHHHHHHHHHH
Q 015590 350 NQKLVEDVDWVLKKM 364 (404)
Q Consensus 350 ~~g~~~~a~~~~~~m 364 (404)
..|+.+.+.++.+.+
T Consensus 219 ~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 219 LNSQVWSALQMSKAL 233 (237)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444444444433
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.06 E-value=1.2e+02 Score=22.16 Aligned_cols=61 Identities=10% Similarity=0.054 Sum_probs=32.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 015590 258 RMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRF 319 (404)
Q Consensus 258 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 319 (404)
.+.+.|.+++..=. .++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34556666544322 33444444455556677777776665455555555555566665543
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.04 E-value=1.3e+02 Score=22.15 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=32.2
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 015590 258 RMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRF 319 (404)
Q Consensus 258 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 319 (404)
.+.+.|.+++.. =..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345566654332 2234444444555566777777776665455555555555666666543
No 322
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=34.86 E-value=3.6e+02 Score=26.94 Aligned_cols=147 Identities=10% Similarity=0.038 Sum_probs=68.5
Q ss_pred HHHHHHHHhhcccC----CCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 015590 144 ISKAIETLFDMPSY----NCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFY 219 (404)
Q Consensus 144 ~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 219 (404)
.+.|.+.|++.... .++||... .+...-.+.|..++-..+++...... +..--..++.+++-..+.+...+
T Consensus 705 ~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL~~~~d~~~l~~ 779 (909)
T 4fke_A 705 ENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRSALACSNEVWLLNR 779 (909)
T ss_dssp HHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHHHhCCCCCHHHHHH
Confidence 45666666664432 14455432 22222334455555555555555432 33334556777776777777777
Q ss_pred HHHHchhCC-CCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015590 220 VLDEFPKQN-CEPNVRTYSTLMHGLCEKGN-VEEAFGLLERME---SEGIDADTVTFNILISGLRKQGKVEEGMKLLERM 294 (404)
Q Consensus 220 ~~~~~~~~~-~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~---~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 294 (404)
+++...... +++. .. ..++.+...+.. .+.|.+.+.+=. ......+...+..++......-..++-.+-++..
T Consensus 780 ~L~~~l~~~~ir~q-d~-~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~t~~~~~~~~~f 857 (909)
T 4fke_A 780 YLGYTLNPDLIRKQ-DA-TSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQF 857 (909)
T ss_dssp HHHHTTCTTTSCGG-GH-HHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred HHHHHhCCCCCchh-hH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 777665432 2221 22 223333333222 233333333211 1112223445666776666554444444444444
Q ss_pred hhC
Q 015590 295 KGK 297 (404)
Q Consensus 295 ~~~ 297 (404)
.+.
T Consensus 858 ~~~ 860 (909)
T 4fke_A 858 KKN 860 (909)
T ss_dssp HTT
T ss_pred Hhh
Confidence 433
No 323
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=34.47 E-value=3.9e+02 Score=27.25 Aligned_cols=176 Identities=10% Similarity=0.126 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHhcccCC--CChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHH
Q 015590 108 DAIEDIMQRIKVEKLCR--FSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGI 185 (404)
Q Consensus 108 ~~a~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 185 (404)
..+.++++.+....... .+.......+....+ .=+.++-.++++++... +... ..+++++...|......-+
T Consensus 288 ~~~~e~lk~L~~~~~~~v~~~~~~~f~~Lv~~lR-~~~~e~L~~l~~~~~~~---~~~r--~~~lDal~~aGT~~a~~~i 361 (1056)
T 1lsh_A 288 SEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLR-NVDAGVLQSIWHKLHQQ---KDYR--RWILDAVPAMATSEALLFL 361 (1056)
T ss_dssp HHHHHHHHHHHHHCSSSCCTTHHHHHHHHHHHHT-TSCHHHHHHHHHHHTTS---HHHH--HHHHHHHHHHCSHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCcchHHHHHHHHHHHh-cCCHHHHHHHHHHHhcc---HHHH--HHHHHHhHhcCCHHHHHHH
Confidence 56667777766543222 222333344445555 67788888888887642 3333 3478888899988666555
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCC-CCCc-------HHHHHHHHHHHHHcCC------HHH
Q 015590 186 YTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQN-CEPN-------VRTYSTLMHGLCEKGN------VEE 251 (404)
Q Consensus 186 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~-------~~~~~~li~~~~~~~~------~~~ 251 (404)
.+.+....+.+ ......+..+..-..--.+..+.+..+.+.. +..+ ..++..|+.-+|.... ...
T Consensus 362 ~~~i~~~~l~~-~ea~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~ 440 (1056)
T 1lsh_A 362 KRTLASEQLTS-AEATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQP 440 (1056)
T ss_dssp HHHHHTTCSCH-HHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHH
T ss_pred HHHHHcCCCCH-HHHHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 55555443332 2222233322222222344555555554431 1122 3356777777776531 223
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015590 252 AFGLLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERM 294 (404)
Q Consensus 252 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 294 (404)
..+.+.+....+ |..--...+.++...|... +...+...
T Consensus 441 i~~~l~~~~~~~---~~~~~~~~LkaLGN~g~p~-~l~~l~~~ 479 (1056)
T 1lsh_A 441 LHDLLSQSSDRA---KEEEIVLALKALGNAGQPN-SIKKIQRF 479 (1056)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHTCGG-GHHHHHTT
T ss_pred HHHHHHHHHhcC---ChHHHHHHHHHhhccCChh-HHHHHHHh
Confidence 333333333332 4444556677777777764 33344444
No 324
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=34.13 E-value=83 Score=24.71 Aligned_cols=18 Identities=6% Similarity=-0.156 Sum_probs=9.3
Q ss_pred HhcCChhHHHHHHHHHHH
Q 015590 314 LDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 314 ~~~g~~~~a~~~~~~~~~ 331 (404)
...|+...+.++.+.+.+
T Consensus 218 ~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 444555555555555543
No 325
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=33.66 E-value=3.2e+02 Score=26.06 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHhcC---CChhHHHHHHHHHh
Q 015590 55 WLSPTEVLKIFSNL---RDPISVISVLNQYS 82 (404)
Q Consensus 55 ~~~~~~li~~~~~~---~~~~~a~~~~~~~~ 82 (404)
..-+..+|..|.+. .++.+|++.|-.+.
T Consensus 353 ~lN~arLI~~Yt~~F~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 353 DIRFANILANYTKSFRYSDPRVAVEYLVLIT 383 (661)
T ss_dssp --CHHHHHHHHHTTTTTTCHHHHHHHHHGGG
T ss_pred cccHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Confidence 44577888888765 78889998887773
No 326
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=33.57 E-value=80 Score=19.02 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=18.3
Q ss_pred HHHhhcCCHHHHHHHHhhcccCCCCcc
Q 015590 136 IYGNMAGRISKAIETLFDMPSYNCWPS 162 (404)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~m~~~~~~p~ 162 (404)
.+-...|+.+.|...+-+|...+..|+
T Consensus 31 vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 31 VLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 333346788888888888877665554
No 327
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=33.19 E-value=1.6e+02 Score=27.41 Aligned_cols=24 Identities=4% Similarity=0.105 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHH
Q 015590 94 YTLIINKLAQAKRFDAIEDIMQRI 117 (404)
Q Consensus 94 ~~~li~~~~~~~~~~~a~~~~~~~ 117 (404)
...++..|++.|-.+.|+++++.+
T Consensus 519 ~e~vL~iCa~l~L~~~ar~I~k~~ 542 (570)
T 3f3f_C 519 IEWMLSICVEWRLPEIAKEIYTTL 542 (570)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHH
Confidence 344445555555555555555544
No 328
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.30 E-value=1.1e+02 Score=21.81 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=23.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 015590 309 VLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKL 353 (404)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 353 (404)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444444455556666666555444455554445555555443
No 329
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.28 E-value=1.6e+02 Score=22.11 Aligned_cols=61 Identities=7% Similarity=0.008 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHcCCChHHHHHHHHHHHHC
Q 015590 306 YQEVLYGLLDKKRFPEAKELVGRMICERMSP--SFVSYKKLIH-G-----LCNQKLVEDVDWVLKKMVQQ 367 (404)
Q Consensus 306 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~~ 367 (404)
|..-+. +...|++-+|-++++..-...-.+ +...|..||+ . ..+.|+...|..++.+....
T Consensus 36 ~~~~i~-lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVR-LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHH-HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333343 344588999988888886654345 4566777777 2 23478999999999888763
No 330
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.20 E-value=52 Score=23.24 Aligned_cols=41 Identities=12% Similarity=-0.110 Sum_probs=21.0
Q ss_pred HhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHH
Q 015590 151 LFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAK 191 (404)
Q Consensus 151 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 191 (404)
|+.+....+.|++..--.-+..+...++++.|.+++..+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444443333334445566677777777666654
No 331
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=31.72 E-value=2.4e+02 Score=24.04 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=21.1
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHcCCCCC
Q 015590 168 LVLNLLVSAKLYGEIQGIYTSAAKLGVEID 197 (404)
Q Consensus 168 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 197 (404)
.++.++. .++...+..+++.+...|..|.
T Consensus 251 ~l~~~~~-~~~~~~~~~~~~~l~~~g~~~~ 279 (373)
T 1jr3_A 251 SLVEAMV-EANGERVMALINEAAARGIEWE 279 (373)
T ss_dssp HHHHHHH-HTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHhCcCHH
Confidence 4555543 4678889999999988886654
No 332
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=31.26 E-value=1.7e+02 Score=22.17 Aligned_cols=18 Identities=22% Similarity=-0.031 Sum_probs=8.4
Q ss_pred CCHhHHHHHHHHHHhcCC
Q 015590 196 IDACCLNILLKGLCENGN 213 (404)
Q Consensus 196 ~~~~~~~~li~~~~~~g~ 213 (404)
++..+-...+.+..+.++
T Consensus 119 ~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444444445554444
No 333
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=30.96 E-value=65 Score=23.28 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=6.0
Q ss_pred cCCHHHHHHHHhh
Q 015590 141 AGRISKAIETLFD 153 (404)
Q Consensus 141 ~g~~~~A~~~~~~ 153 (404)
.|+.+.+..+++.
T Consensus 12 ~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 12 RGDVQEVRRLLHR 24 (156)
T ss_dssp HTCHHHHHHHHHT
T ss_pred hCCHHHHHHHHHh
Confidence 4444444444444
No 334
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=30.74 E-value=18 Score=21.85 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=15.3
Q ss_pred HHHHHHHhhccc-CCCCccHHHHHHHHHHH
Q 015590 145 SKAIETLFDMPS-YNCWPSVKTFNLVLNLL 173 (404)
Q Consensus 145 ~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~ 173 (404)
++|.+.|.+|.+ .++ ++..+|...|+.+
T Consensus 3 eEae~aF~~lL~~~~V-~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQV-DSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTC-CSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCC-CCCCcHHHHHHHh
Confidence 456666666554 333 3335666666665
No 335
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.60 E-value=1.2e+02 Score=21.69 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=32.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 015590 259 MESEGIDADTVTFNILISGLRKQG-KVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRF 319 (404)
Q Consensus 259 m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 319 (404)
+.+.|.+++..=. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4556666544322 3344444444 4556777777776665555555555555556655543
No 336
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=30.37 E-value=1.8e+02 Score=22.06 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHCCCCCC
Q 015590 251 EAFGLLERMESEGIDAD 267 (404)
Q Consensus 251 ~A~~~~~~m~~~~~~p~ 267 (404)
...++.+.+.+.|..++
T Consensus 92 ~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 92 GTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHTTCCSS
T ss_pred hHHHHHHHHHHCCCCCC
Confidence 34455555555555544
No 337
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.37 E-value=2.3e+02 Score=24.03 Aligned_cols=81 Identities=9% Similarity=-0.076 Sum_probs=35.2
Q ss_pred HHHcCCCHHHHHHHHHHHhhC-CCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHH
Q 015590 277 GLRKQGKVEEGMKLLERMKGK-GCYP---NSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFV---SYKKLIHGLC 349 (404)
Q Consensus 277 ~~~~~g~~~~a~~~~~~m~~~-~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~li~~~~ 349 (404)
..+..|+.+-+..+++.-... +..+ +..-.+.|. ..+..|..+ +++.+.+.|..++.. -.+ -+...+
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~t-pL~~A~ 252 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWED----VAMRFVEMGIDVNMEDNEHTV-PLYLSV 252 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHH----HHHHHHTTTCCTTCCCTTSCC-HHHHHH
T ss_pred HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCC-HHHHHH
Confidence 334567776666555543220 1001 122222232 334556544 333444455444321 122 233334
Q ss_pred cCCChHHHHHHHHH
Q 015590 350 NQKLVEDVDWVLKK 363 (404)
Q Consensus 350 ~~g~~~~a~~~~~~ 363 (404)
..|+.+-+..+++.
T Consensus 253 ~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 253 RAAMVLLTKELLQK 266 (364)
T ss_dssp HTCCHHHHHHHHHH
T ss_pred HhChHHHHHHHHHc
Confidence 55776666666554
No 338
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.29 E-value=1.5e+02 Score=21.15 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 015590 201 LNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN--VEEAFGLLERMESEGID 265 (404)
Q Consensus 201 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~ 265 (404)
...++.-|...|+.++|.+.++++.... -....+..++..++-+.+. .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4556777777777777777777775211 1122334444445444432 35566677777666544
No 339
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.22 E-value=4.3e+02 Score=26.50 Aligned_cols=131 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 015590 204 LLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGK 283 (404)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 283 (404)
++..+...|..+-|.++.... +.+...--.+..+|...|++++|...|++.. .|+..+... ...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~----------~~~ 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQ----------FAV 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCS----------CGG
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCccc----------ccc
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHcCC
Q 015590 284 VEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFV----SYKKLIHGLCNQK 352 (404)
Q Consensus 284 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g 352 (404)
......++...... .....-|..++..+-+.+.++.+.++-+..+..--.-|.. .|..+.++.+..|
T Consensus 880 ~~~~~~ll~~~e~~--~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKYHHQ--NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHTTTC--SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCccccc--chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
No 340
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.96 E-value=1.1e+02 Score=19.44 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=31.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 015590 258 RMESEGIDADTVTFNILISGLRKQG-KVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKR 318 (404)
Q Consensus 258 ~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 318 (404)
.+.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455666655433 23444444443 344566666666665544455555555566655554
No 341
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=29.40 E-value=1.5e+02 Score=20.76 Aligned_cols=77 Identities=10% Similarity=0.056 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 015590 282 GKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMIC-ERMSPSFVSYKKLIHGLCNQKLVEDVDWV 360 (404)
Q Consensus 282 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 360 (404)
.++.+|..-+++.... .+|......++..+-.. ++.|.++.....+ .|+ ++.++.-.++...+.|-.+.. +.
T Consensus 2 ~~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~ 74 (119)
T 1wty_A 2 ASLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PF 74 (119)
T ss_dssp CCHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HH
T ss_pred hHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HH
Confidence 3567777777777655 45666666666665443 4556666555543 344 344555566666666655444 44
Q ss_pred HHHHH
Q 015590 361 LKKMV 365 (404)
Q Consensus 361 ~~~m~ 365 (404)
|..|.
T Consensus 75 w~~m~ 79 (119)
T 1wty_A 75 WLEML 79 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 342
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.33 E-value=54 Score=26.40 Aligned_cols=16 Identities=6% Similarity=0.040 Sum_probs=7.1
Q ss_pred HHHhcCChHHHHHHHH
Q 015590 207 GLCENGNLEAAFYVLD 222 (404)
Q Consensus 207 ~~~~~g~~~~a~~~~~ 222 (404)
..+..|+.+-+..+++
T Consensus 146 ~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 146 LAACTNQPHIVHYLTE 161 (260)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3344555444444433
No 343
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.40 E-value=1e+02 Score=22.35 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=18.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 015590 310 LYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQK 352 (404)
Q Consensus 310 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 352 (404)
+..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333333344445555555544443444444444444444444
No 344
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=28.26 E-value=76 Score=22.51 Aligned_cols=51 Identities=16% Similarity=0.114 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 015590 272 NILISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKEL 325 (404)
Q Consensus 272 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 325 (404)
--.|...+..++.+-|+++++-..+.| +...|.+++-.|...=+++.++++
T Consensus 36 kDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 36 KDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 334555566777777777777777766 666777777777766666665554
No 345
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.15 E-value=4.6e+02 Score=26.15 Aligned_cols=156 Identities=9% Similarity=0.005 Sum_probs=71.4
Q ss_pred HHHHHHHhcCc---HhHHHHHHHHHHHcC----CCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHH
Q 015590 168 LVLNLLVSAKL---YGEIQGIYTSAAKLG----VEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLM 240 (404)
Q Consensus 168 ~ll~~~~~~~~---~~~a~~~~~~~~~~g----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 240 (404)
.++...|..|. .+.|.+.|+.....+ ++||.. ..+...-.+.|.-++-..+++..... .+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 34555556554 345666666665432 344432 22333333456555555555555543 2333445566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHhhC---CCCCChhhHHHHHHHHHh
Q 015590 241 HGLCEKGNVEEAFGLLERMESEG-IDADTVTFNILISGLRKQ-GKVEEGMKLLERMKGK---GCYPNSASYQEVLYGLLD 315 (404)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~ 315 (404)
.+++...+.+...++++...... +++.. ...++.+.... ...+.|++.+.+=-+. ........+..++.....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~qd--~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRKQD--ATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCGGG--HHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCchhh--HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 67666667666666665554322 22221 11222232221 1234444444432111 112233455666666555
Q ss_pred cCChhHHHHHHHHHH
Q 015590 316 KKRFPEAKELVGRMI 330 (404)
Q Consensus 316 ~g~~~~a~~~~~~~~ 330 (404)
.-.-++-.+-++...
T Consensus 844 ~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 844 RFSSEFELQQLEQFK 858 (909)
T ss_dssp TCCSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHH
Confidence 444344444444443
No 346
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.37 E-value=2.1e+02 Score=21.89 Aligned_cols=153 Identities=16% Similarity=0.030 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHH
Q 015590 89 PNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNL 168 (404)
Q Consensus 89 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 168 (404)
++...-...+..+.+.+..+....+.+.+. . ++...-...+..+.. .++.+ +...+.++.. .++..+-..
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~-~----~~~~vr~~a~~aL~~-~~~~~-~~~~L~~~l~---~~~~~vr~~ 100 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALK-D----EDAWVRRAAADALGQ-IGDER-AVEPLIKALK---DEDGWVRQS 100 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-C----SCHHHHHHHHHHHHH-HCCGG-GHHHHHHHTT---CSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHc-C----CCHHHHHHHHHHHHh-hCCHH-HHHHHHHHHc---CCCHHHHHH
Confidence 455555566666666665433333333331 1 122333333333333 33322 2222222222 144444444
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcCC
Q 015590 169 VLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKGN 248 (404)
Q Consensus 169 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 248 (404)
.+.++.+.++.+.. ..+..+.+ .++..+-...+.++.+.|+.+.. ..+..+.+ .++...-...+.++.+.+.
T Consensus 101 a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 101 AAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDERAV-EPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 55555555553322 22222322 34555555555555555554322 22222222 3444444455555555554
Q ss_pred HHHHHHHHHHHH
Q 015590 249 VEEAFGLLERME 260 (404)
Q Consensus 249 ~~~A~~~~~~m~ 260 (404)
+++...+..+.
T Consensus 173 -~~~~~~L~~~l 183 (211)
T 3ltm_A 173 -ERVRAAMEKLA 183 (211)
T ss_dssp -HHHHHHHHHHH
T ss_pred -hhHHHHHHHHH
Confidence 23333333333
No 347
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=27.24 E-value=33 Score=20.74 Aligned_cols=29 Identities=3% Similarity=0.014 Sum_probs=20.9
Q ss_pred HHhcCC-ChhHHHHHHHHHhhCCCCCCCHH
Q 015590 64 IFSNLR-DPISVISVLNQYSKRKDYNPNEA 92 (404)
Q Consensus 64 ~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~ 92 (404)
.+..++ +++.|+..|..+.....++|+..
T Consensus 28 cL~~~~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 28 CLQDNNWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 334443 88999999999876677777643
No 348
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.53 E-value=3.5e+02 Score=24.21 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred cHhHHHHHHHHHHH--------cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCC----CCcHHHHHHHHHHHHH
Q 015590 178 LYGEIQGIYTSAAK--------LGVEIDACCLNILLKGLCENGNLEAAFYVLDEFPKQNC----EPNVRTYSTLMHGLCE 245 (404)
Q Consensus 178 ~~~~a~~~~~~~~~--------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~ 245 (404)
..++...+++...+ .++..+......++.. -.|+...+..+++.+..... .....+-..+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred c------------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-----HHHHHHHHHHHhh
Q 015590 246 K------------------------GNVEEAFGLLERMESEGIDADTVTFNILISGLRKQGK-----VEEGMKLLERMKG 296 (404)
Q Consensus 246 ~------------------------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~ 296 (404)
. ++.+.|+..+.+|.+.|..|....-..+..+....|. ...|...++....
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~ 323 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTR 323 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 297 KGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 297 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
-|.+-........+-.++.+-+-..+...++...+
T Consensus 324 ~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 324 VGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
No 349
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.50 E-value=1.4e+02 Score=21.86 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=34.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 015590 258 RMESEGIDADTVTFNILISGLRKQG-KVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRF 319 (404)
Q Consensus 258 ~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 319 (404)
.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35556666554332 3344444444 4556777777777665555665555556666666644
No 350
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.47 E-value=1e+02 Score=21.95 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=20.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 015590 239 LMHGLCEKGNVEEAFGLLERMESEGIDADTVTFNILISGLRKQG 282 (404)
Q Consensus 239 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 282 (404)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444444555555555555544444444433444444443
No 351
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.02 E-value=1.6e+02 Score=19.98 Aligned_cols=60 Identities=7% Similarity=-0.020 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH-----HHCCCCCCHHhHHHHHH
Q 015590 320 PEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKM-----VQQGFVPRMGMWREIVG 381 (404)
Q Consensus 320 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~~~~p~~~~~~~ll~ 381 (404)
-.|.++.+++...|+.|+..+...++..|...+. + +.++.++. ...|..|+....+.+=+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FEh 90 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFEH 90 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 3466666777777788877777777777776654 1 33322221 23477777777665543
No 352
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=25.50 E-value=1.3e+02 Score=21.53 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=8.6
Q ss_pred HHHhcCCchHHHHHHHH
Q 015590 100 KLAQAKRFDAIEDIMQR 116 (404)
Q Consensus 100 ~~~~~~~~~~a~~~~~~ 116 (404)
..+..|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 34445555555555544
No 353
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=25.47 E-value=2.5e+02 Score=22.07 Aligned_cols=132 Identities=7% Similarity=0.022 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHhcCC-chHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCC-CCccHHHH
Q 015590 89 PNEALYTLIINKLAQAKR-FDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYN-CWPSVKTF 166 (404)
Q Consensus 89 p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~ 166 (404)
.+...+..++..+...+. -..+..+|+.+-..+....+-.-+...+..... ....++...+|+.+-..| -..+..-+
T Consensus 82 Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~~-~~~~~~l~~~F~~~D~d~dG~Is~~E~ 160 (229)
T 3dd4_A 82 VNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLR-GTVQEKLNWAFNLYDINKDGYITKEEM 160 (229)
T ss_dssp CCHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSSCCSSCCHHHHHHHHHHHHH-SCHHHHHHHHHHHHCTTCSSCCBHHHH
T ss_pred cCHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHcC-CChHHHHHHHHHHhCCCCCCeECHHHH
Confidence 455555555544322222 233456666654443233343444444444443 333445555666553322 12344444
Q ss_pred HHHHHHHHh------------cCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 015590 167 NLVLNLLVS------------AKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDE 223 (404)
Q Consensus 167 ~~ll~~~~~------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 223 (404)
..++..+.. .-..+.+..++..+-..| ....++.-++..+.+...+..+...|+.
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~EF~~~~~~~~~~~~~~~~~D~ 227 (229)
T 3dd4_A 161 LDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNK--DGVVTIDEFIESCQKDENIMRSMQLFEN 227 (229)
T ss_dssp HHHHHHHHHHCC-----------CCTHHHHHHHHHCSSC--SSBCCHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHhcCCC--CCcEeHHHHHHHHHhCHHHHHHHHhccc
Confidence 444444321 112346667777664332 2345677777777766666666666553
No 354
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=24.89 E-value=2.7e+02 Score=22.44 Aligned_cols=122 Identities=10% Similarity=0.033 Sum_probs=51.8
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHchhCCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015590 196 IDACCLNILLKGLCENGNLEAAFYVLDEFPKQNCEPNVRTYSTLMHGLCEKG-NVEEAFGLLERMESEGIDADTVTFNIL 274 (404)
Q Consensus 196 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~l 274 (404)
++..+-...+.+..+.|+.+ +...+..+.+ .++...-...+.++.+.+ ..+.+...+..+... ++...-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d---~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQD---KNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC---SCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcC---CCHHHHHHH
Confidence 34444444445555554432 2222222222 234333344444444443 123344444444332 344455555
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015590 275 ISGLRKQGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMIC 331 (404)
Q Consensus 275 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (404)
+.++.+.|+......+...+.+ ++ .-...+.++.+.|. ..+...+..+..
T Consensus 213 ~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 213 IIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred HHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 5666666654433333333322 12 22334555666665 355555555554
No 355
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.70 E-value=1.8e+02 Score=24.71 Aligned_cols=219 Identities=14% Similarity=0.041 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHH
Q 015590 89 PNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNL 168 (404)
Q Consensus 89 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 168 (404)
.|..-++.|. ..+..|+.+-+..+++.-.... ..+..-.+.+...+. .|+.+-+..+++.-.. ++...-.+
T Consensus 16 ~d~~g~t~L~-~Aa~~g~~~~v~~Ll~~g~~~~---~~d~~g~t~L~~A~~-~g~~~~v~~Ll~~g~~----~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENMEKIH-VAARKGQTDEVRRLIETGVSPT---IQNRFGCTALHLACK-FGCVDTAKYLASVGEV----HSLWHGQK 86 (364)
T ss_dssp CCHHHHHHHH-HHHHHTCHHHHHHHHHTTCCTT---CCCTTCCCHHHHHHH-HCCHHHHHHHHHHCCC----CCCBTTBC
T ss_pred cCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCcc---ccCCCCCcHHHHHHH-cCCHHHHHHHHHCCCC----ccccCCCC
Confidence 3444444443 3445667666665554411100 111111223333333 6777666666655332 22111112
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHHcCCCCCH--------------------hHHHHHHHHHHhcC--ChHHHHHHHHHchh
Q 015590 169 VLNLLVSAKLYGEIQGIYTSAAKLGVEIDA--------------------CCLNILLKGLCENG--NLEAAFYVLDEFPK 226 (404)
Q Consensus 169 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--------------------~~~~~li~~~~~~g--~~~~a~~~~~~~~~ 226 (404)
.+...+..|+.+-+..+++.....|..++. .-. +.+...+..| +.+-+..+++.
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~~~v~~Ll~~--- 162 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQ-TALHWCVGLGPEYLEMIKILVQL--- 162 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCC-CHHHHHHHSCGGGHHHHHHHHHH---
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCC-CHHHHHHHcCCchHHHHHHHHHc---
Confidence 333445667777666666665444443332 112 2344445566 56555555544
Q ss_pred CCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC
Q 015590 227 QNCEPN---VRTYSTLMHGLCEKGNVEEAFGLLERMES-EGIDA---DTVTFNILISGLRKQGKVEEGMKLLERMKGKGC 299 (404)
Q Consensus 227 ~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 299 (404)
|..++ ..-++.|. ..+..|+.+-+..+++.-.. .+..+ |..-++.| ...+..|+.+-+..+ .+.|.
T Consensus 163 -ga~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~L----l~~ga 235 (364)
T 3ljn_A 163 -GASPTAKDKADETPLM-RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMRF----VEMGI 235 (364)
T ss_dssp -TCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHHH----HTTTC
T ss_pred -CCCCcccCCCCCCHHH-HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHHHHHH----HHcCC
Confidence 32222 22233333 34566777655555543221 01001 22222233 334566776644444 44554
Q ss_pred CCCh---hhHHHHHHHHHhcCChhHHHHHHHH
Q 015590 300 YPNS---ASYQEVLYGLLDKKRFPEAKELVGR 328 (404)
Q Consensus 300 ~p~~---~~~~~li~~~~~~g~~~~a~~~~~~ 328 (404)
.++. .-.+.| ...+..|+.+-+..+++.
T Consensus 236 d~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 236 DVNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 4432 223333 334556777666666654
No 356
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=24.65 E-value=2.4e+02 Score=24.71 Aligned_cols=237 Identities=13% Similarity=0.085 Sum_probs=112.6
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhCCCCCCCHH--HHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 015590 60 EVLKIFSNLRDPISVISVLNQYSKRKDYNPNEA--LYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIY 137 (404)
Q Consensus 60 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (404)
+.+...+..|+.+.+..+++. |..|+.. ...+.+...+..|+.+-+..+++.-.... ..+..-.+.+...
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~-----g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A 87 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQR-----GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN---AKAKDDQTPLHCA 87 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT-----TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS---CCCTTSCCHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHc-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC---CCCCCCCCHHHHH
Confidence 345555667887765555542 3344322 12234555677788877776666521111 1111122233334
Q ss_pred HhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHh--HHHHHHHHHHhcCChH
Q 015590 138 GNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDAC--CLNILLKGLCENGNLE 215 (404)
Q Consensus 138 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~ 215 (404)
+. .|+.+-+.-+++.-...+. .+...++ .+...+..|+.+.+..+++ .+..++.. .-.+.+...+..|+.+
T Consensus 88 ~~-~g~~~~v~~Ll~~ga~~~~-~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~ 160 (437)
T 1n11_A 88 AR-IGHTNMVKLLLENNANPNL-ATTAGHT-PLHIAAREGHVETVLALLE----KEASQACMTKKGFTPLHVAAKYGKVR 160 (437)
T ss_dssp HH-HTCHHHHHHHHHHTCCTTC-CCTTCCC-HHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred HH-CCCHHHHHHHHhCCCCCCC-CCCCCCc-HHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence 44 7888777666665322111 1122222 3344556677765555543 34322211 1123444556778877
Q ss_pred HHHHHHHHchhCCCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHcCCCHHHHHH
Q 015590 216 AAFYVLDEFPKQNCEPNV---RTYSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVT---FNILISGLRKQGKVEEGMK 289 (404)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~ 289 (404)
-+..+++. |..++. ...+. +...+..|+.+ +++.+.+.|..++... ++. +...+..|+.+-+..
T Consensus 161 ~v~~Ll~~----g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~ 230 (437)
T 1n11_A 161 VAELLLER----DAHPNAAGKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVARS 230 (437)
T ss_dssp HHHHHHHT----TCCTTCCCSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHHH
T ss_pred HHHHHHhC----CCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHH
Confidence 66555543 323322 12222 33345666654 4455555665554332 333 344456777765555
Q ss_pred HHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHH
Q 015590 290 LLERMKGKGCYPN---SASYQEVLYGLLDKKRFPEAKELV 326 (404)
Q Consensus 290 ~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~ 326 (404)
++ +.|..++ ....+.|. ..+..|..+-+..++
T Consensus 231 Ll----~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll 265 (437)
T 1n11_A 231 LL----QYGGSANAESVQGVTPLH-LAAQEGHAEMVALLL 265 (437)
T ss_dssp HH----HTTCCTTCCCTTCCCHHH-HHHHTTCHHHHHHHH
T ss_pred HH----HcCCCCCCCCCCCCCHHH-HHHHCCCHHHHHHHH
Confidence 54 3443333 22233333 345566655444333
No 357
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.52 E-value=1.1e+02 Score=24.44 Aligned_cols=54 Identities=17% Similarity=0.012 Sum_probs=29.5
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHcCCCCCH-------hHHHHHHHHHHhc---CChHHHHHHHHHc
Q 015590 170 LNLLVSAKLYGEIQGIYTSAAKLGVEIDA-------CCLNILLKGLCEN---GNLEAAFYVLDEF 224 (404)
Q Consensus 170 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~---g~~~~a~~~~~~~ 224 (404)
+...++.|+.+.+..+++.+.+.|..++. .-.+.| ...+.. |+.+-+..+++.-
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhcC
Confidence 34455667777776777766666654433 222333 333334 6666666666543
No 358
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=24.51 E-value=4.3e+02 Score=27.71 Aligned_cols=79 Identities=15% Similarity=0.076 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 015590 284 VEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKK 363 (404)
Q Consensus 284 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 363 (404)
.++..+.|.++.+---.-|.......+.-...++++..|++++.++.+. +|+...|..++..+...| |+....+.++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 4455666777766511113333333333344678899999999999876 478888888887777666 5555555555
Q ss_pred HH
Q 015590 364 MV 365 (404)
Q Consensus 364 m~ 365 (404)
+.
T Consensus 1342 ~~ 1343 (1354)
T 3lxu_X 1342 MM 1343 (1354)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 359
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=24.36 E-value=85 Score=25.49 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=11.2
Q ss_pred HHhcCcHhHHHHHHHHHHHcC
Q 015590 173 LVSAKLYGEIQGIYTSAAKLG 193 (404)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~g 193 (404)
.++.|+.+.+..+++...+.+
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHHhhcc
Confidence 344566665555555554444
No 360
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.01 E-value=3.5e+02 Score=23.42 Aligned_cols=25 Identities=4% Similarity=0.126 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHH
Q 015590 93 LYTLIINKLAQAKRFDAIEDIMQRI 117 (404)
Q Consensus 93 ~~~~li~~~~~~~~~~~a~~~~~~~ 117 (404)
....+|.-|...|++++|.+.++++
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 3456677777777777777777776
No 361
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.87 E-value=3.3e+02 Score=22.96 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHH
Q 015590 94 YTLIINKLAQAKRFDAIEDIMQRIK 118 (404)
Q Consensus 94 ~~~li~~~~~~~~~~~a~~~~~~~~ 118 (404)
...+|.-|...|+.++|...++.+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4566777777788888877777753
No 362
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.81 E-value=2.6e+02 Score=21.84 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=10.9
Q ss_pred cCCHHHHHHHHhhcccCC
Q 015590 141 AGRISKAIETLFDMPSYN 158 (404)
Q Consensus 141 ~g~~~~A~~~~~~m~~~~ 158 (404)
..+++.|+-.+-+|.+.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 455666666666666655
No 363
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.59 E-value=3.4e+02 Score=23.08 Aligned_cols=53 Identities=9% Similarity=0.028 Sum_probs=36.9
Q ss_pred CCHHHHHHHHhhcccCCCCccH--HHHHHHHHHHHhcCcHhHHHHHHHHHHHcCC
Q 015590 142 GRISKAIETLFDMPSYNCWPSV--KTFNLVLNLLVSAKLYGEIQGIYTSAAKLGV 194 (404)
Q Consensus 142 g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 194 (404)
.+..+.+++---+-...+.|.. -+....|..+.+.+++..|..+-+++++.+.
T Consensus 184 ~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 184 GNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp TCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 3445555555555555555543 3566778888899999999999999998763
No 364
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.28 E-value=1.2e+02 Score=21.98 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=29.2
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 015590 168 LVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNL 214 (404)
Q Consensus 168 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 214 (404)
.++..+...+..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455555555666777777777666556666666666666666654
No 365
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=22.93 E-value=4.8e+02 Score=24.59 Aligned_cols=308 Identities=8% Similarity=-0.028 Sum_probs=152.9
Q ss_pred hcCCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHH
Q 015590 66 SNLRDPISVISVLNQYSKRKDYNPNEALYTLIINKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRIS 145 (404)
Q Consensus 66 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 145 (404)
.+.|++..+..+-..+ ....+.|- ..|..+...+ .....++...++..-.. .+..+..-...+..+.. .+++.
T Consensus 17 ~~~~~~~~~~~l~~~l-~~~pL~~y-l~y~~l~~~l-~~~~~~ev~~Fl~~~~~---~p~~~~Lr~~~l~~l~~-~~~w~ 89 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGL-KDYPLYPY-LEYRQITDDL-MNQPAVTVTNFVRANPT---LPPARTLQSRFVNELAR-REDWR 89 (618)
T ss_dssp HHTTCHHHHHHHSGGG-TTSTTHHH-HHHHHHHHTG-GGCCHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHH-TTCHH
T ss_pred HHCCCHHHHHHHHHhh-cCCCcHHH-HHHHHHHhCc-ccCCHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHh-CCCHH
Confidence 3457777777765554 22222111 2333333222 12245555555554321 11222223344555555 78888
Q ss_pred HHHHHHhhcccCCCCccHHHHHHHHHHHHhcCcHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH--HHHHHHH
Q 015590 146 KAIETLFDMPSYNCWPSVKTFNLVLNLLVSAKLYGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEA--AFYVLDE 223 (404)
Q Consensus 146 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~--a~~~~~~ 223 (404)
..+..+.. . +.+...-.....+....|+..+|......+-..| ......++.++..+.+.|.+.. ...=++.
T Consensus 90 ~~l~~~~~-~----p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~ 163 (618)
T 1qsa_A 90 GLLAFSPE-K----PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRL 163 (618)
T ss_dssp HHHHHCCS-C----CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhccC-C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 87776554 1 2344444446666777888777777776666655 4456677777777776665433 2222222
Q ss_pred chhCC-----------CCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHcCCCHHHHH
Q 015590 224 FPKQN-----------CEPNVRT-YSTLMHGLCEKGNVEEAFGLLERMESEGIDADTVT---FNILISGLRKQGKVEEGM 288 (404)
Q Consensus 224 ~~~~~-----------~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~ 288 (404)
+...| ++++... ...++..+. +...+...... +.++... +...+.-+.+ .+.+.|.
T Consensus 164 al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar-~d~~~A~ 234 (618)
T 1qsa_A 164 AMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDFTRQMAAVAFASVAR-QDAENAR 234 (618)
T ss_dssp HHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH-HCHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHh-cCHHHHH
Confidence 22222 1112111 111111111 11222221111 1222221 1222333333 4789999
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHH----HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 015590 289 KLLERMKGKGCYPNSASYQEVLYGL----LDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKLVEDVDWVLKKM 364 (404)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (404)
..+....+.. ..+......+-..+ ...+...++...+...... .++.....-.+....+.|+++.|...|+.|
T Consensus 235 ~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l 311 (618)
T 1qsa_A 235 LMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARL 311 (618)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999887543 22433333333333 3334355677777765543 344444444455556789999999999988
Q ss_pred HHCCCCCCHHhHHHHHHhhccCCCCcchhhHHHhh
Q 015590 365 VQQGFVPRMGMWREIVGCVTFGKDNRNRVYVTETV 399 (404)
Q Consensus 365 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 399 (404)
......-+...|- +-+++...|+.+++..+++.+
T Consensus 312 ~~~~~~~~r~~YW-~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 312 PMEAKEKDEWRYW-QADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp CTTGGGSHHHHHH-HHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccHhHHHH-HHHHHHHcCCHHHHHHHHHHH
Confidence 6432221111222 223555667777777766655
No 366
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=22.88 E-value=2.7e+02 Score=21.71 Aligned_cols=114 Identities=8% Similarity=0.002 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCC-CCccHHHHHHHHHHHHh-cCc------
Q 015590 107 FDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYN-CWPSVKTFNLVLNLLVS-AKL------ 178 (404)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~-~~~------ 178 (404)
-..+..+|+.+-..+....+-.-+...+..... ....++...+|+.+-..| -..+..-+..++..... .|.
T Consensus 88 ~~~~~~~f~~~D~d~~G~I~~~Ef~~~l~~~~~-~~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~g~~~~~~~ 166 (224)
T 1s1e_A 88 STYAHYLFNAFDTTQTGSVKFEDFVTALSILLR-GTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVL 166 (224)
T ss_dssp HHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHH-CCHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHHHHHHTTCCCGGG
T ss_pred HHHHHHHHHHhcCCCCCcEeHHHHHHHHHHHcc-CCHHHHHHHHHHHHcCCCCCeECHHHHHHHHHHHHHHhcccCCCCC
Confidence 345666777665444333344444444444443 334455566666554322 12333334444433211 121
Q ss_pred -----HhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 015590 179 -----YGEIQGIYTSAAKLGVEIDACCLNILLKGLCENGNLEAAFYVLDE 223 (404)
Q Consensus 179 -----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 223 (404)
.+.+..+++.+-..| ....++.-++..+.+...+-+....+..
T Consensus 167 ~~~~~~~~~~~~f~~~D~d~--dG~Is~~EF~~~~~~~~~l~~~l~~~~~ 214 (224)
T 1s1e_A 167 KEDTPRQHVDVFFQKMDKNK--DGIVTLDEFLESCQEDDNIMRSLQLFQN 214 (224)
T ss_dssp CSSSHHHHHHHHHHHHCTTC--SSCEEHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHhCCCC--CCcEeHHHHHHHHHhCHHHHHHhcCCCC
Confidence 245666776664332 2346777777777766555555555544
No 367
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=22.71 E-value=2.8e+02 Score=23.20 Aligned_cols=44 Identities=7% Similarity=0.104 Sum_probs=29.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 015590 255 LLERMESEGIDADTVTFNILISGLRKQGKVEEGMKLLERMKGKG 298 (404)
Q Consensus 255 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 298 (404)
+++.+.+.|+.|...++.-++..+++.=.++.+.++|+.+...|
T Consensus 176 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g 219 (310)
T 3hzj_A 176 LHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEG 219 (310)
T ss_dssp HHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 45555566777766666666666666666777777777776665
No 368
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.53 E-value=2.8e+02 Score=21.69 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-----hhHHHHHHHHHHHCCC
Q 015590 281 QGKVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKR-----FPEAKELVGRMICERM 334 (404)
Q Consensus 281 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~ 334 (404)
..+++.|+-.+.+|.+.| .|....-..++.+.-..|. ...|...++....-|.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 455666666666666665 4443333444444444333 2234444444444454
No 369
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.30 E-value=1.5e+02 Score=20.87 Aligned_cols=19 Identities=0% Similarity=-0.146 Sum_probs=9.3
Q ss_pred HHcCCCHHHHHHHHHHHhh
Q 015590 278 LRKQGKVEEGMKLLERMKG 296 (404)
Q Consensus 278 ~~~~g~~~~a~~~~~~m~~ 296 (404)
+...++++.|..+...+..
T Consensus 71 al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 71 ELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3444555555555544443
No 370
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=22.16 E-value=2.3e+02 Score=20.49 Aligned_cols=14 Identities=0% Similarity=-0.232 Sum_probs=5.6
Q ss_pred cCCChHHHHHHHHH
Q 015590 350 NQKLVEDVDWVLKK 363 (404)
Q Consensus 350 ~~g~~~~a~~~~~~ 363 (404)
..|+.+-+..+.+.
T Consensus 144 ~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 144 ALGYRSVQQVIESH 157 (167)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHH
Confidence 34444444333333
No 371
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.93 E-value=1.8e+02 Score=19.37 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 015590 283 KVEEGMKLLERMKGKGCYPNSASYQEVLYGLLDKKRFP 320 (404)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 320 (404)
..++|.++++.+..+| +..|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHH
Confidence 4555555555555542 234555555554444433
No 372
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.83 E-value=2.1e+02 Score=22.64 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=5.6
Q ss_pred HhcCChHHHHHHH
Q 015590 209 CENGNLEAAFYVL 221 (404)
Q Consensus 209 ~~~g~~~~a~~~~ 221 (404)
+..|+.+-+..++
T Consensus 144 ~~~~~~~~v~~Ll 156 (256)
T 2etb_A 144 ACTKQWDVVTYLL 156 (256)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3445544443333
No 373
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.26 E-value=4e+02 Score=23.06 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHH
Q 015590 58 PTEVLKIFSNLRDPISVISVLNQY 81 (404)
Q Consensus 58 ~~~li~~~~~~~~~~~a~~~~~~~ 81 (404)
-..+|.-|...|+.++|...++++
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 357889999999999999999998
No 374
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.23 E-value=3.8e+02 Score=22.78 Aligned_cols=28 Identities=4% Similarity=0.000 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 015590 341 YKKLIHGLCNQKLVEDVDWVLKKMVQQG 368 (404)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~~ 368 (404)
...-+....+.+++..|..+.+++++.+
T Consensus 210 Lr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 210 LQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444555556666666666666666443
No 375
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.23 E-value=2.4e+02 Score=21.69 Aligned_cols=17 Identities=12% Similarity=0.004 Sum_probs=8.2
Q ss_pred HHhcCCChhHHHHHHHH
Q 015590 64 IFSNLRDPISVISVLNQ 80 (404)
Q Consensus 64 ~~~~~~~~~~a~~~~~~ 80 (404)
..++.|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 8 QACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhc
Confidence 33445555555554443
No 376
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.10 E-value=1.5e+02 Score=23.87 Aligned_cols=16 Identities=13% Similarity=-0.041 Sum_probs=7.9
Q ss_pred hcCCChhHHHHHHHHH
Q 015590 66 SNLRDPISVISVLNQY 81 (404)
Q Consensus 66 ~~~~~~~~a~~~~~~~ 81 (404)
++.|+.+.+..+++..
T Consensus 21 ~~~g~~~~v~~Ll~~~ 36 (273)
T 2pnn_A 21 VAQSNCQELESLLPFL 36 (273)
T ss_dssp HHTTCSSTTTTHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3445555555555444
No 377
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.75 E-value=3.8e+02 Score=22.56 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHCCCCCCHHh
Q 015590 306 YQEVLYGLLDKKRFPEAKELVGRMICERMSPSFVSYKKLIHGLCNQKL--VEDVDWVLKKMVQQGFVPRMGM 375 (404)
Q Consensus 306 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~ 375 (404)
...++.-|...|+.++|.+.++++...... ......++..++-+.++ .+...+++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467888899999999999999998521111 12334444455555433 4556677777777666554433
No 378
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=20.40 E-value=1.1e+02 Score=25.17 Aligned_cols=16 Identities=6% Similarity=0.098 Sum_probs=7.4
Q ss_pred HHHhcCCchHHHHHHH
Q 015590 100 KLAQAKRFDAIEDIMQ 115 (404)
Q Consensus 100 ~~~~~~~~~~a~~~~~ 115 (404)
..+..|+.+-+..+++
T Consensus 65 ~Aa~~g~~~~v~~Ll~ 80 (285)
T 3d9h_A 65 EAAIHGHQLSLRNLIS 80 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3344555544444443
No 379
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=20.37 E-value=3.7e+02 Score=22.26 Aligned_cols=116 Identities=15% Similarity=0.124 Sum_probs=48.9
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcccCCCChHHHHHHHHHHHhhcCCHHHHHHHHhhcccCCCCccHHHHHHHHHHHHhcC
Q 015590 98 INKLAQAKRFDAIEDIMQRIKVEKLCRFSDGFFYNVIKIYGNMAGRISKAIETLFDMPSYNCWPSVKTFNLVLNLLVSAK 177 (404)
Q Consensus 98 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 177 (404)
+...++.|+.+....++...... ....+..-.+.+...+. .|+.+-+..+++.-..... +|...++ .+...+..|
T Consensus 28 L~~A~~~g~~~~v~~ll~~~~~~--~~~~d~~g~t~L~~A~~-~g~~~~v~~Ll~~g~~~~~-~~~~g~t-~L~~A~~~g 102 (351)
T 3utm_A 28 LLEAARSGNEEKLMALLTPLNVN--CHASDGRKSTPLHLAAG-YNRVRIVQLLLQHGADVHA-KDKGGLV-PLHNACSYG 102 (351)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTT--CCCSSTTCCCHHHHHHH-TTCHHHHHHHHHTTCCTTC-CCTTCCC-HHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCC--cccCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCCc-cCCCCCc-HHHHHHHCC
Confidence 33445677777666666432111 01112222233333333 6776666555553211110 1111222 233334555
Q ss_pred cHhHHHHHHHHHHHcCCCCCHhH--HHHHHHHHHhcCChHHHHHHHH
Q 015590 178 LYGEIQGIYTSAAKLGVEIDACC--LNILLKGLCENGNLEAAFYVLD 222 (404)
Q Consensus 178 ~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 222 (404)
+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 103 ~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 145 (351)
T 3utm_A 103 HYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145 (351)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 544 3344445554443221 1123344455666665555544
Done!