BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015591
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L DV G + ++G +G+GKTTLL +LAG GEI + G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKN 82
Query: 266 SGYCEQTDIHSPQI---TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
GY Q S QI TVEE V FS EI ++E + + +EL G+ L
Sbjct: 83 VGYVFQN--PSSQIIGATVEEDVAFSL------EIMGLDESEMRKRIKKVLELVGLS-GL 133
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRT 382
+N LS Q++RL IA L + + +DEP + LD + I + ++++ + G+
Sbjct: 134 AAADPLN-LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 383 IVCTIHQ 389
I+ H+
Sbjct: 193 IILVTHE 199
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME---GEIKIGGYPKVQETFARV 265
D+ + G +G SG GK+TLL ++AG +T S + GE ++ P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPE--INSKTKAEFVNEVLETIELDGIKDSLV 323
G Q+ P ++V E++ F L A + IN + VN+V E ++L + D
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVLQLAHLLDR-- 129
Query: 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT--GR 381
LS QR+R+ I LVA PS+ +DEP + LDA A + MR + + GR
Sbjct: 130 ---KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGR 185
Query: 382 TIVCTIH 388
T++ H
Sbjct: 186 TMIYVTH 192
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME---GEIKIGGYPKVQETFARV 265
D+ + G +G SG GK+TLL ++AG +T S + GE ++ P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPE--INSKTKAEFVNEVLETIELDGIKDSLV 323
G Q+ P ++V E++ F L A + IN + VN+V E ++L + D
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVLQLAHLLDR-- 129
Query: 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT--GR 381
LS QR+R+ I LVA PS+ +DEP + LDA A + MR + + GR
Sbjct: 130 ---KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGR 185
Query: 382 TIVCTIH 388
T++ H
Sbjct: 186 TMIYVTH 192
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 34/201 (16%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY------PK-- 257
+L ++ S++ G + ++G SG+GK+TL ++ ++ G++ I G+ P
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 77
Query: 258 -------VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
+Q+ + + +P ++VE+ VI++A L A +F++E+
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGA--------HDFISELR 128
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E +++VG G GLS QR+R+ IA LV NP I+ DE T+ LD + +IM
Sbjct: 129 EGY------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 371 RAVKNVVDTGRTIVCTIHQPS 391
R + + GRT++ H+ S
Sbjct: 182 RNMHKIC-KGRTVIIIAHRLS 201
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 34/201 (16%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY------PK-- 257
+L ++ S++ G + ++G SG+GK+TL ++ ++ G++ I G+ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 75
Query: 258 -------VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
+Q+ + + +P ++VE+ VI++A L A +F++E+
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGA--------HDFISELR 126
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E +++VG G GLS QR+R+ IA LV NP I+ DE T+ LD + +IM
Sbjct: 127 EGY------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 371 RAVKNVVDTGRTIVCTIHQPS 391
R + + GRT++ H+ S
Sbjct: 180 RNMHKIC-KGRTVIIIAHRLS 199
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 34/201 (16%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY------PK-- 257
+L ++ S++ G + ++G SG+GK+TL ++ ++ G++ I G+ P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 258 -------VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
+Q+ + + +P ++VE+ VI++A L A +F++E+
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGA--------HDFISELR 132
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E +++VG G GLS QR+R+ IA LV NP I+ DE T+ LD + +IM
Sbjct: 133 EGY------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 371 RAVKNVVDTGRTIVCTIHQPS 391
R + + GRT++ H+ S
Sbjct: 186 RNMHKIC-KGRTVIIIAHRLS 205
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME---GEIKIGGYPKVQETFARV 265
D+ + G +G SG GK+TLL ++AG +T S + GE ++ P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPE--INSKTKAEFVNEVLETIELDGIKDSLV 323
G Q+ P ++V E++ F L A + IN + VN+V E ++L + D
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVLQLAHLLDR-- 129
Query: 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT--GR 381
LS QR+R+ I LVA PS+ +D+P + LDA A + MR + + GR
Sbjct: 130 ---KPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGR 185
Query: 382 TIVCTIH 388
T++ H
Sbjct: 186 TMIYVTH 192
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 34/201 (16%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY------PK-- 257
+L ++ S++ G + ++G SG+GK+TL ++ ++ G++ I G+ P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 258 -------VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
+Q+ + + +P ++VE+ VI++A L A +F++E+
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGA--------HDFISELR 132
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E +++VG G GLS QR+R+ IA LV NP I+ D+ T+ LD + +IM
Sbjct: 133 EGY------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 371 RAVKNVVDTGRTIVCTIHQPS 391
R + + GRT++ H+ S
Sbjct: 186 RNMHKIC-KGRTVIIIAHRLS 205
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 34/201 (16%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY------PK-- 257
+L ++ S++ G + ++G +G+GK+TL ++ ++ G++ I G+ P
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 77
Query: 258 -------VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
+Q+ + + +P ++VE+ VI++A L A +F++E+
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGA--------HDFISELR 128
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E +++VG G GLS QR+R+ IA LV NP I+ DE T+ LD + +IM
Sbjct: 129 EGY------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 371 RAVKNVVDTGRTIVCTIHQPS 391
R + + GRT++ H+ S
Sbjct: 182 RNMHKIC-KGRTVIIIAHRLS 201
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK--TTGSM--EGEIKIGG 254
F + K+ L +V ++ G ++G SGAGKTT + ++AG +TG + + +
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 255 YPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK-TKAEFVNEVLETI 313
+ R G QT P +T E++ F P N K +K E V E
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-------PLTNMKMSKEEIRKRVEEVA 125
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
++ I L P LS Q++R+ +A LV +PS++ +DEP + LDAR V
Sbjct: 126 KILDIHHVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 374 KNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401
K V G T++ H P+ DIF D V
Sbjct: 184 KEVQSRLGVTLLVVSHDPA-DIFAIADRV 211
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK--TTGSM--EGEIKIGG 254
F + K+ L +V ++ G ++G SGAGKTT + ++AG +TG + + +
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 255 YPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK-TKAEFVNEVLETI 313
+ R G QT P +T E++ F P N K +K E V E
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-------PLTNMKMSKEEIRKRVEEVA 125
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
++ I L P LS Q++R+ +A LV +PS++ +DEP + LDAR V
Sbjct: 126 KILDIHHVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 374 KNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401
K V G T++ H P+ DIF D V
Sbjct: 184 KEVQSRLGVTLLVVSHDPA-DIFAIADRV 211
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 32/200 (16%)
Query: 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG--------- 254
L +L + +R G + ++G SG+GK+T L L + EGEI I G
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD--EGEIIIDGINLKAKDTN 73
Query: 255 YPKVQE----TFARVSGYCEQTDIHSPQITVEESVIFSAW-LRLAPEINSKTKAEFVNEV 309
KV+E F R + + P +TV ++ + +R P ++ KA
Sbjct: 74 LNKVREEVGMVFQRFNLF--------PHMTVLNNITLAPMKVRKWPREKAEAKA------ 119
Query: 310 LETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
+E ++ G+KD P + LS Q +R+ IA L P I+ DEPT+ LD +
Sbjct: 120 MELLDKVGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEV 177
Query: 370 MRAVKNVVDTGRTIVCTIHQ 389
+ +K + + G T+V H+
Sbjct: 178 LSVMKQLANEGMTMVVVTHE 197
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 34/194 (17%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY------PK-- 257
+L ++ S++ G + ++G SG+GK+TL ++ ++ G++ I G+ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 75
Query: 258 -------VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
+Q+ + + +P ++VE+ VI++A L A +F++E+
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGA--------HDFISELR 126
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E +++VG G GLS QR+R+ IA LV NP I+ DE T+ LD + +IM
Sbjct: 127 EGY------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 371 RAVKNVVDTGRTIV 384
R + + GRT++
Sbjct: 180 RNMHKIC-KGRTVI 192
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 34/194 (17%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY------PK-- 257
+L ++ S++ G + ++G SG+GK+TL ++ ++ G++ I G+ P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 258 -------VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
+Q+ + + +P ++VE+ VI++A L A +F++E+
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGA--------HDFISELR 132
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E +++VG G GLS QR+R+ IA LV NP I+ DE T+ LD + +IM
Sbjct: 133 EGY------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 371 RAVKNVVDTGRTIV 384
R + + GRT++
Sbjct: 186 RNMHKIC-KGRTVI 198
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 32/200 (16%)
Query: 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG--------- 254
L +L + +R G + ++G SG+GK+T L L + EGEI I G
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD--EGEIIIDGINLKAKDTN 94
Query: 255 YPKVQE----TFARVSGYCEQTDIHSPQITVEESVIFSAW-LRLAPEINSKTKAEFVNEV 309
KV+E F R + + P +TV ++ + +R P ++ KA
Sbjct: 95 LNKVREEVGMVFQRFNLF--------PHMTVLNNITLAPMKVRKWPREKAEAKA------ 140
Query: 310 LETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
+E ++ G+KD P + LS Q +R+ IA L P I+ DEPT+ LD +
Sbjct: 141 MELLDKVGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEV 198
Query: 370 MRAVKNVVDTGRTIVCTIHQ 389
+ +K + + G T+V H+
Sbjct: 199 LSVMKQLANEGMTMVVVTHE 218
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 17/222 (7%)
Query: 188 IDTPLEMRERGFT---EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG 244
I LE + F+ K++++L + ++ G AL+G SG GK+T + ++ ++
Sbjct: 384 IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYD 441
Query: 245 SMEGEIKIGGYP--KVQETFAR-VSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKT 301
++G + I G + + R + G Q + T+ E++ + EI
Sbjct: 442 PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAV 500
Query: 302 KAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361
K + + ++L D+LVG G LS Q++R+ IA LV NP I+ +DE T+ L
Sbjct: 501 KEANAYDFI--MKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSAL 557
Query: 362 DARAAAIIMRAVKNVVDTGRTIVCTIHQPSI----DIFEAFD 399
D + A++ A+ + GRT + H+ S D+ FD
Sbjct: 558 DTESEAVVQAALDKARE-GRTTIVIAHRLSTVRNADVIAGFD 598
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 14/198 (7%)
Query: 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP--- 256
T + +L ++ ++ G AL+G SG GK+T++ +L + M G + + G
Sbjct: 1042 TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQ 1099
Query: 257 -KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETI 313
VQ A++ G Q I ++ E++ + R+ EI K +++ +++
Sbjct: 1100 LNVQWLRAQL-GIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDS- 1156
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
L ++ VG G LS Q++R+ IA LV P I+ +DE T+ LD + ++ A+
Sbjct: 1157 -LPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL 1214
Query: 374 KNVVDTGRTIVCTIHQPS 391
+ GRT + H+ S
Sbjct: 1215 DKARE-GRTCIVIAHRLS 1231
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 17/222 (7%)
Query: 188 IDTPLEMRERGFT---EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG 244
I LE + F+ K++++L + ++ G AL+G SG GK+T + ++ ++
Sbjct: 384 IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYD 441
Query: 245 SMEGEIKIGGYP--KVQETFAR-VSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKT 301
++G + I G + + R + G Q + T+ E++ + EI
Sbjct: 442 PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAV 500
Query: 302 KAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361
K + + ++L D+LVG G LS Q++R+ IA LV NP I+ +DE T+ L
Sbjct: 501 KEANAYDFI--MKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSAL 557
Query: 362 DARAAAIIMRAVKNVVDTGRTIVCTIHQPSI----DIFEAFD 399
D + A++ A+ + GRT + H+ S D+ FD
Sbjct: 558 DTESEAVVQAALDKARE-GRTTIVIAHRLSTVRNADVIAGFD 598
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 14/198 (7%)
Query: 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP--- 256
T + +L ++ ++ G AL+G SG GK+T++ +L + M G + + G
Sbjct: 1042 TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQ 1099
Query: 257 -KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETI 313
VQ A++ G Q I ++ E++ + R+ EI K +++ +++
Sbjct: 1100 LNVQWLRAQL-GIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDS- 1156
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
L ++ VG G LS Q++R+ IA LV P I+ +DE T+ LD + ++ A+
Sbjct: 1157 -LPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL 1214
Query: 374 KNVVDTGRTIVCTIHQPS 391
+ GRT + H+ S
Sbjct: 1215 DKARE-GRTCIVIAHRLS 1231
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 99/202 (49%), Gaps = 22/202 (10%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258
+ + + +L D+ S+ G A +G+SG GK+TL++++ S G+I I G+
Sbjct: 349 YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS--GQILIDGH--- 403
Query: 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI 318
+ + + + + +++++FS ++ + T + EV+E ++
Sbjct: 404 -----NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD--EEVVEAAKMANA 456
Query: 319 KDSLVGIP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
D ++ +P G G LS Q++RL+IA + NP I+ +DE T+ LD + +II
Sbjct: 457 HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516
Query: 370 MRAVKNVVDTGRTIVCTIHQPS 391
A+ +V+ RT + H+ S
Sbjct: 517 QEAL-DVLSKDRTTLIVAHRLS 537
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 8/180 (4%)
Query: 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP--KVQETFARVSGYCEQ 271
+ G AL+G SG GK+T++ +L + ++G+I I G + F R +
Sbjct: 441 VNAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDGVDVRDINLEFLRKNVAVVS 498
Query: 272 TDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331
+ T+EE++ E+ + K + ++T L ++LVG G L
Sbjct: 499 QEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKT--LPNGYNTLVGDRGTQ-L 555
Query: 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391
S Q++R+ IA LV NP I+ +DE T+ LDA + I+ +A+ GRT + H+ S
Sbjct: 556 SGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLS 614
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 113/235 (48%), Gaps = 29/235 (12%)
Query: 169 KMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEK-KLRLLYDVTGSLRPGVLTALMGVSG 227
+ + + L++A + K Y + + E+ ++ +L ++ S+ PG AL+G SG
Sbjct: 1056 RKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSG 1115
Query: 228 AGKTTLLDVLAGRKTTGSMEGEIKIGGYP----KVQETFARVSGYCEQTDIHSPQITVEE 283
GK+T++ +L + ++ GEI I G + T ++++ ++ + ++ E
Sbjct: 1116 CGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD--CSIAE 1171
Query: 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP-------GVNG--LSTE 334
++I+ L P +S T A+ V E L I + + +P G G LS
Sbjct: 1172 NIIYG----LDP--SSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGDRGTQLSGG 1221
Query: 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ 389
Q++R+ IA LV NP I+ +DE T+ LD + ++ A+ + GRT + H+
Sbjct: 1222 QKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE-GRTCIVIAHR 1275
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 19/162 (11%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSME-GEIKIGGYPKVQETFA 263
L ++ ++ G AL+G SG+GK+TLL +AG + T+G + E + P
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---- 74
Query: 264 RVSGYCEQTDIHSPQITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDGIKDS 321
R G Q P +TV +++ F LR AP EI+ K V EV + + +D + +
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK-----VREVAKMLHIDKLLNR 129
Query: 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363
LS Q++R+ IA LV P ++ +DEP + LDA
Sbjct: 130 YPW-----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 15/193 (7%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQET---- 261
+ D + S+ G +TAL+G SG+GK+T+L +L + G I + G+ Q
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWL 416
Query: 262 FARVSGYCEQTDIHSPQITVEESVIFSA---WLRLAPEINSKTKAEFVNEVLETIELDGI 318
+++ ++ + S ++ E++ + A A EI + AE N V
Sbjct: 417 RSKIGTVSQEPILFS--CSIAENIAYGADDPSSVTAEEI--QRVAEVANAVAFIRNFPQG 472
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378
+++VG GV LS Q++R+ IA L+ NP I+ +DE T+ LDA ++ A+ ++D
Sbjct: 473 FNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD 531
Query: 379 TGRTIVCTIHQPS 391
GRT++ H+ S
Sbjct: 532 -GRTVLVIAHRLS 543
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 15/192 (7%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFAR 264
R L + + G AL+G +G+GK+T+ +L EG+IKIGG K + R
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY---RFYDAEGDIKIGG--KNVNKYNR 88
Query: 265 VS-----GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
S G Q I + T++ ++++ E+ TK+ + + +E L
Sbjct: 89 NSIRSIIGIVPQDTILFNE-TIKYNILYGKLDATDEEVIKATKSAQLYDFIEA--LPKKW 145
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
D++VG G+ LS +R+R+ IA L+ +P I+ DE T+ LD++ + +AV++ +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRK 203
Query: 380 GRTIVCTIHQPS 391
RT++ H+ S
Sbjct: 204 NRTLIIIAHRLS 215
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 15/193 (7%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQET---- 261
+ D + S+ G +TAL+G SG+GK+T+L +L + G I + G+ Q
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWL 447
Query: 262 FARVSGYCEQTDIHSPQITVEESVIFSA---WLRLAPEINSKTKAEFVNEVLETIELDGI 318
+++ ++ + S ++ E++ + A A EI + AE N V
Sbjct: 448 RSKIGTVSQEPILFS--CSIAENIAYGADDPSSVTAEEI--QRVAEVANAVAFIRNFPQG 503
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378
+++VG GV LS Q++R+ IA L+ NP I+ +DE T+ LDA ++ A+ ++D
Sbjct: 504 FNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD 562
Query: 379 TGRTIVCTIHQPS 391
GRT++ H S
Sbjct: 563 -GRTVLVIAHHLS 574
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 10/195 (5%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA--GRKTTGSME-GEIKIGGYPKVQETFA 263
L +V +++ G ++MG SG+GK+T+L+++ + T G + IK + T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 264 RVS--GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321
R G+ Q P +T E+V + ++ + + + E L+ EL+
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE----E 136
Query: 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV-VDTG 380
N LS Q++R+ IA L NP II D+PT LD++ IM+ +K + + G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG 196
Query: 381 RTIVCTIHQPSIDIF 395
+T+V H ++ F
Sbjct: 197 KTVVVVTHDINVARF 211
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 13/189 (6%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA--GRKTTGS--MEG-EIKIGGYPKVQE 260
+L ++ S++ G +++G SG+GK+TLL +L T G +EG E+ ++
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 261 TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD 320
R G+ Q P++T E+VI P+ +K + E++ L G+ D
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL------GLGD 132
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
L P LS +++R+ IA L P ++F DEPT LD+ +M + + G
Sbjct: 133 KLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190
Query: 381 RTIVCTIHQ 389
+IV H+
Sbjct: 191 TSIVMVTHE 199
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 10/195 (5%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA--GRKTTGSME-GEIKIGGYPKVQETFA 263
L +V +++ G ++MG SG+GK+T+L+++ + T G + IK + T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 264 RVS--GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321
R G+ Q P +T E+V + ++ + + + E L+ EL+
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE----E 136
Query: 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV-VDTG 380
N LS Q++R+ IA L NP II D+PT LD++ IM+ +K + + G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG 196
Query: 381 RTIVCTIHQPSIDIF 395
+T+V H ++ F
Sbjct: 197 KTVVVVTHDINVARF 211
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 31/201 (15%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ET 261
++L D++ +P + A G SG GK+T+ +L + GEI I G P E
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNISLEN 73
Query: 262 FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL-ETIEL----- 315
+ G+ Q +S I + +R + + ++ +E L + ++L
Sbjct: 74 WRSQIGFVSQ-----------DSAIMAGTIR--ENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 316 --DGIKDSL---VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
+ + D L VG GV +S QR+RL IA + NP I+ +DE T LD+ + +++
Sbjct: 121 FVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 371 RAVKNVVDTGRTIVCTIHQPS 391
+A+ +++ GRT + H+ S
Sbjct: 180 KALDSLM-KGRTTLVIAHRLS 199
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 188 IDTPLEMRERGFTEKKLRLLYD-VTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTG 244
++ L + GF + L+ + L G + A++G +G GK+TLLD+L G R G
Sbjct: 1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60
Query: 245 SMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAE 304
+E IG P+ F+ Y SV+ + + IN+ K +
Sbjct: 61 KIEVYQSIGFVPQF---FSSPFAY---------------SVLDIVLMGRSTHINTFAKPK 102
Query: 305 FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
+ + LD + + + LS QR+ + IA + + +I +DEPT+ LD
Sbjct: 103 SHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 365 AAAIIMRAVKNVVDT-GRTIVCTIHQPS 391
I++ + ++ + T+V T HQP+
Sbjct: 163 NQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY------PKVQETFARVS 266
+++ G L+G SG GKTT L ++AG + EG I G PK +
Sbjct: 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQ 90
Query: 267 GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
Y P +TV E++ F ++ P+ + + E+L+ EL L P
Sbjct: 91 SYAVW-----PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LNRYP 139
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
LS QR+R+ +A +V P ++ MDEP + LDA+ + MRA
Sbjct: 140 A--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK-LRVAMRA 182
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY------PKVQETFARVS 266
+++ G L+G SG GKTT L ++AG + EG I G PK +
Sbjct: 34 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQ 91
Query: 267 GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
Y P +TV E++ F ++ P+ + + E+L+ EL L P
Sbjct: 92 SYAVW-----PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LNRYP 140
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
LS QR+R+ +A +V P ++ MDEP + LDA+ + MRA
Sbjct: 141 A--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK-LRVAMRA 183
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 24/188 (12%)
Query: 210 VTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYC 269
++G +R G + L+G +GAGK+TLL AG T+G +G I+ G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG--KGSIQFAGQPLEAWSATKLA--- 72
Query: 270 EQTDIHSPQITVEESVIFSA--WLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327
+H ++ +++ F+ W L + KT+ E +N+V + LD D L
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLG--RS 123
Query: 328 VNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
N LS + +R+ +A ++ ANP+ ++ +DEP LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQG 183
Query: 381 RTIVCTIH 388
IV + H
Sbjct: 184 LAIVXSSH 191
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY------------PKVQE 260
++ G L+G SG GKTT L ++AG + G+I IG PK ++
Sbjct: 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR--GQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 261 TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD 320
Y P +TV +++ F LR P + E V E EL G+ +
Sbjct: 83 IAMVFQSYA-----LYPHMTVYDNIAFPLKLRKVP------RQEIDQRVREVAELLGLTE 131
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
L P LS QR+R+ + +V P + MDEP + LDA+ + MRA
Sbjct: 132 LLNRKP--RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK-LRVRMRA 180
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 18/174 (10%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSME-GEIKIGGYP-KV 258
K++ + V+ ++ G AL+G SG GKTT L +LAG + T+G + ++ + P K
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI 318
+E G Q P +TV E++ F R I+ + V E+ + +D +
Sbjct: 75 REV-----GMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNL 126
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
D LS Q++R+ +A LV P ++ DEP + LDA +IMRA
Sbjct: 127 LDR-----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDAN-LRMIMRA 174
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 93/188 (49%), Gaps = 24/188 (12%)
Query: 210 VTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYC 269
++G +R G + L+G +GAGK+TLL +AG T+G +G I+ G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSATKLA--- 72
Query: 270 EQTDIHSPQITVEESVIFSA--WLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327
+H ++ +++ F+ W L + KT+ E +N+V + LD D L
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLG--RS 123
Query: 328 VNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
N LS + +R+ +A ++ ANP+ ++ +D+P LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQG 183
Query: 381 RTIVCTIH 388
IV + H
Sbjct: 184 LAIVMSSH 191
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 93/188 (49%), Gaps = 24/188 (12%)
Query: 210 VTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYC 269
++G +R G + L+G +GAGK+TLL +AG T+G +G I+ G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSATKLA--- 72
Query: 270 EQTDIHSPQITVEESVIFSA--WLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327
+H ++ +++ F+ W L + KT+ E +N+V + LD D L
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLG--RS 123
Query: 328 VNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
N LS + +R+ +A ++ ANP+ ++ +D+P LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQG 183
Query: 381 RTIVCTIH 388
IV + H
Sbjct: 184 LAIVMSSH 191
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 24/188 (12%)
Query: 210 VTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYC 269
++G +R G + L+G +GAGK+TLL AG T+G +G I+ G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG--KGSIQFAGQPLEAWSATKLA--- 72
Query: 270 EQTDIHSPQITVEESVIFSA--WLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327
+H ++ +++ F+ W L + KT+ E +N+V + LD D L
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLG--RS 123
Query: 328 VNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
N LS + +R+ +A ++ ANP+ ++ +DEP LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQG 183
Query: 381 RTIVCTIH 388
IV + H
Sbjct: 184 LAIVXSSH 191
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 24/223 (10%)
Query: 183 DLKYYIDTP--LEMRE-RGFTE---------KKLRLLYDVTGSLRPGVLTALMGVSGAGK 230
DL+ D P +E+RE RG E KK +L D+T ++PG AL+G +G+GK
Sbjct: 335 DLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGK 394
Query: 231 TTLLDVLAGRKTTGSMEGEIKIGGYP--KVQETFARVSGYCEQTDIHSPQITVEESVIFS 288
TT++++L + G+I + G K++ + R S D TV+E++ +
Sbjct: 395 TTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYG 452
Query: 289 AWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG--LSTEQRKRLTIAVELV 346
EI K + ++ + +G + L NG LS QR+ L I +
Sbjct: 453 NPGATDEEIKEAAKLTHSDHFIKHLP-EGYETVLTD----NGEDLSQGQRQLLAITRAFL 507
Query: 347 ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ 389
ANP I+ +DE T+ +D + I A+ +++ G+T + H+
Sbjct: 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHR 549
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 22/194 (11%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L DV+ ++ PG AL+G SGAGK+T+L +L S G I+I G Q T A +
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS--GCIRIDGQDISQVTQASLR 127
Query: 267 GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
+ + +++V+F+ +A I +EV + GI D+++ P
Sbjct: 128 SHI--------GVVPQDTVLFNDT--IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFP 177
Query: 327 -------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV 377
G G LS +++R+ IA ++ P II +DE T+ LD I ++ V
Sbjct: 178 EGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC 237
Query: 378 DTGRTIVCTIHQPS 391
RT + H+ S
Sbjct: 238 -ANRTTIVVAHRLS 250
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCE-QT 272
G + ALMG +GAGK+TL +LAG GEI + G ++ + AR + Q
Sbjct: 29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQY 88
Query: 273 DIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332
+ P +T+ + + +L E+ AEF +V + +EL +S + G S
Sbjct: 89 PVEVPGVTIANFLRLALQAKLGREVGV---AEFWTKVKKALELLDWDESYLSRYLNEGFS 145
Query: 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374
++KR I LV P+ +DE +GLD A ++ R V
Sbjct: 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVN 187
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 105/237 (44%), Gaps = 32/237 (13%)
Query: 164 ESYKGKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALM 223
E + LP +V+F+++++ + E +L V S++PG L A++
Sbjct: 327 EEADNALALPNVEGSVSFENVEFR-----------YFENTDPVLSGVNFSVKPGSLVAVL 375
Query: 224 GVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283
G +G+GK+TL++++ + G +++ + G+ PQ E
Sbjct: 376 GETGSGKSTLMNLIP--RLIDPERGRVEVDELDVRTVKLKDLRGHISAV----PQ----E 425
Query: 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP---------GVNGLSTE 334
+V+FS ++ + + + +E++E ++ I D ++ +P G S
Sbjct: 426 TVLFSGTIKENLKWGREDATD--DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGG 483
Query: 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391
Q++RL+IA LV P ++ +D+ T+ +D I+ +K T + T P+
Sbjct: 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT 540
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 9/191 (4%)
Query: 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDV--LAGRKTTGSMEGEIKIGGYPKVQ 259
+ ++ L +V+ + G + ++G SGAGK+TL+ L R T EG + + G
Sbjct: 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 71
Query: 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
+ + ++ Q + + S + L E+++ K E V E + L G+
Sbjct: 72 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 131
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
D P + LS Q++R+ IA L +NP ++ DE T+ LD I+ +K++
Sbjct: 132 DKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 380 -GRTIVCTIHQ 389
G TI+ H+
Sbjct: 190 LGLTILLITHE 200
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYP-----KVQ 259
L + +++ G +TA++G +G GK+TL G + ++G + + K Y K++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
E+ V + D +V + V F A PE + + V+ L+ ++ +K
Sbjct: 84 ESIGIV---FQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR---VDNALKRTGIEHLK 137
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR-AVKNVVD 378
D + LS Q+KR+ IA LV P ++ +DEPT GLD + IM+ V+ +
Sbjct: 138 DK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 379 TGRTIVCTIHQPSIDI 394
G TI+ H IDI
Sbjct: 193 LGITIIIATH--DIDI 206
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 37/227 (16%)
Query: 179 VAFQDLKY-YIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVL 237
V FQD+ + Y + P +++L +T +L PG +TAL+G +G+GK+T+ +L
Sbjct: 17 VKFQDVSFAYPNHP-----------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 238 AG-RKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV-EESVIFSAWLR--L 293
+ TG G++ + G P VQ + +H+ V +E ++F R +
Sbjct: 66 QNLYQPTG---GKVLLDGEPLVQ---------YDHHYLHTQVAAVGQEPLLFGRSFRENI 113
Query: 294 APEI-NSKTKAEFVNEVLETIELDGIK------DSLVGIPGVNGLSTEQRKRLTIAVELV 346
A + + T E +E+ D I D+ VG G N LS QR+ + +A L+
Sbjct: 114 AYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETG-NQLSGGQRQAVALARALI 172
Query: 347 ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSI 392
P ++ +D+ T+ LDA + R + + RT++ HQ S+
Sbjct: 173 RKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSL 219
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 29/215 (13%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY--- 255
+TE +L +++ S+ PG L+G +G+GK+TLL T EGEI+I G
Sbjct: 29 YTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT---EGEIQIDGVSWD 85
Query: 256 PKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 315
E + + G Q + IFS R + N+ + + +V + + L
Sbjct: 86 SITLEQWRKAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGL 134
Query: 316 DGIKDSLVG------IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
+ + G + G LS ++ + +A +++ I+ +DEP+ LD II
Sbjct: 135 RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 370 MRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404
R +K I+C EA E QF
Sbjct: 195 RRTLKQAFADCTVILCEAR------IEAMLECDQF 223
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 27/190 (14%)
Query: 211 TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT--GSMEGEIKIGGYPKVQETFARVSGY 268
G + G + ++G +G GKTT +L G T GS+ E +I Y K Q F G
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGT 346
Query: 269 CEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328
+Q +L A + T + F EV + + L + +S V
Sbjct: 347 VQQ------------------YLENASKDALSTSSWFFEEVTKRLNLHRLLES-----NV 383
Query: 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTI- 387
N LS + ++L IA L + +D+P++ LD I+ +A+K V + + I
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 388 HQPSIDIFEA 397
H SI + A
Sbjct: 444 HDLSIHDYIA 453
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 22/182 (12%)
Query: 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSG---YCEQ 271
+ + ++G +G GKTT+L +LAG + K+G E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGK----DEVLKRFRGKEIYNYF 78
Query: 272 TDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI------ 325
+++S ++ + + + + SK VNE+L I+ G KD + +
Sbjct: 79 KELYSNELKIVHKIQYVEYA-------SKFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131
Query: 326 --PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTI 383
N LS +RL +A L+ + D+P++ LD R + +A++ ++ I
Sbjct: 132 WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVI 191
Query: 384 VC 385
V
Sbjct: 192 VV 193
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 10/195 (5%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA--GRKTTGSME-GEIKIGGYPKVQETFA 263
L +V +++ G ++ G SG+GK+T L+++ + T G + IK + T
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 264 RVS--GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321
R G+ Q P +T E+V + + + + + E L+ EL+
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELE----E 136
Query: 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV-VDTG 380
N LS Q++R+ IA L NP II DEPT LD++ I + +K + + G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 381 RTIVCTIHQPSIDIF 395
+T+V H ++ F
Sbjct: 197 KTVVVVTHDINVARF 211
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 101/215 (46%), Gaps = 13/215 (6%)
Query: 192 LEMRERGFTE--KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGE 249
+E R FT + + L ++ + G AL+G SG+GK+T+ ++ + EGE
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGE 399
Query: 250 IKIGGYPKVQETFARVSGYCE--QTDIHSPQITVEESVIFSAWLRLAPE-INSKTKAEFV 306
I + G+ + T A + ++H TV ++ ++ + + E I + +
Sbjct: 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYA 459
Query: 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
+ + ++D D+++G GV LS QR+R+ IA L+ + I+ +DE T+ LD +
Sbjct: 460 MDFIN--KMDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 367 AIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
I A+ + RT + H+ S E DE+
Sbjct: 517 RAIQAALDE-LQKNRTSLVIAHRLS--TIEKADEI 548
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFA--- 263
D++ ++ G L+G SG GKTT L +AG T G + E + P+ + F
Sbjct: 24 DLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPE-KGVFVPPK 82
Query: 264 -RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
R Q+ P TV +++ F LR P K E V E E G+ + L
Sbjct: 83 ERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVP------KQEIDKRVREVAEXLGLTELL 136
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
P LS QR+R+ + ++ P + DEP + LDA+
Sbjct: 137 NRKP--RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 9/191 (4%)
Query: 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDV--LAGRKTTGSMEGEIKIGGYPKVQ 259
+ ++ L +V+ + G + ++G SGAGK+TL+ L R T EG + + G
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 94
Query: 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
+ + ++ Q + + S + L E+++ K E V E + L G+
Sbjct: 95 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 154
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
D P + LS Q++R+ IA L +NP ++ D+ T+ LD I+ +K++
Sbjct: 155 DKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 380 -GRTIVCTIHQ 389
G TI+ H+
Sbjct: 213 LGLTILLITHE 223
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 19/218 (8%)
Query: 192 LEMRERGFTE--KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGE 249
LE R FT +++ L ++ + G AL+G SG+GK+T+ ++ + EG
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGH 399
Query: 250 IKIGGYPKVQETFARVSGYCE--QTDIHSPQITVEESVIFSAWLRLAPE-INSKTKAEFV 306
I + G+ + T A + ++H TV ++ ++ + E I + +
Sbjct: 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 459
Query: 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
+ + ++D D+++G GV LS QR+R+ IA L+ + I+ +DE T+ LD +
Sbjct: 460 MDFIN--KMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 367 AIIMRAVKNVVD---TGRTIVCTIHQPSIDIFEAFDEV 401
RA++ +D RT + H+ S E DE+
Sbjct: 517 ----RAIQAALDELQKNRTSLVIAHRLS--TIEQADEI 548
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 14/187 (7%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE--TF 262
R + V+ +R G + L+G SG+GKTT+L ++AG + +G++ IGG +V +
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGK-RVTDLPPQ 85
Query: 263 ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
R G Q +TV ++V F + P+ + V E+L + L+ +
Sbjct: 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRF 142
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GR 381
+ LS Q++R+ +A L P ++ DEP +D + + V+ V D G
Sbjct: 143 -----PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV 197
Query: 382 TIVCTIH 388
T V H
Sbjct: 198 TSVFVTH 204
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 89/186 (47%), Gaps = 16/186 (8%)
Query: 214 LRPGVLTALMGVSGAGKTTLLDVLAGR------KTTGSMEGEIKIGGYPKVQETFARVSG 267
++ G + ++G +G GK+T + +LAG+ S +G I+ ++Q F ++
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 268 YCEQTDIHSPQ-ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
E + PQ + + + + L + + K E EV++ +EL+ + +
Sbjct: 104 -GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLE---EVVKALELENVLER----- 154
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCT 386
+ LS + +R+ IA L+ N + F DEP++ LD R RA++ + + G++++
Sbjct: 155 EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVV 214
Query: 387 IHQPSI 392
H ++
Sbjct: 215 EHDLAV 220
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 84/197 (42%), Gaps = 32/197 (16%)
Query: 212 GSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPK-VQETFARVSGY 268
G ++ G + ++G +G GKTT + LAG T G +E ++ + P+ ++ +
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADY------ 360
Query: 269 CEQTDIHSPQITVEESVIFSAWLRL-APEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327
E ++ ++ A ++NS + E+L+ + + + D
Sbjct: 361 --------------EGTVYELLSKIDASKLNSNF---YKTELLKPLGIIDLYDR-----E 398
Query: 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTI 387
VN LS + +R+ IA L+ + I +DEP+ LD + RA++++ + +
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Query: 388 HQPSIDIFEAFDEVKQF 404
+ I D + F
Sbjct: 459 EHDVLXIDYVSDRLXVF 475
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 9/194 (4%)
Query: 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDV--LAGRKTTGSMEGEIKIGGYPKVQ 259
+ ++ L +V+ + G + ++G SGAGK+TL+ L R T EG + + G
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 94
Query: 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
+ + ++ Q + S + L E+++ K E V E + L G+
Sbjct: 95 LSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 154
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
D P + LS Q++R+ IA L +NP ++ D+ T+ LD I+ +K++
Sbjct: 155 DKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 380 -GRTIVCTIHQPSI 392
G TI+ H+ +
Sbjct: 213 LGLTILLITHEXDV 226
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 23/166 (13%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG---YPK----- 257
+L D++ SL PG + ++G SG GKTTLL LAG + S GEI + G + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS--GEISLSGKTIFSKNTNLP 76
Query: 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET-IELD 316
V+E R GY Q + P +TV ++ + N K + + +E +EL
Sbjct: 77 VRE---RRLGYLVQEGVLFPHLTVYRNIAYGLG-------NGKGRTAQERQRIEAMLELT 126
Query: 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
GI + P + LS Q++R +A L +P +I +DEP + LD
Sbjct: 127 GISELAGRYP--HELSGGQQQRAALARALAPDPELILLDEPFSALD 170
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 21/203 (10%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-------KVQ 259
L V+ S+ G AL+G SG+GK+T+ ++ S G I + G+ ++
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS--GSICLDGHDVRDYKLTNLR 416
Query: 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPE-INSKTKAEFVNEVLETIELDGI 318
FA VS ++H T+ ++ ++A E I + E +E + G+
Sbjct: 417 RHFALVS-----QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMP-QGL 470
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378
D+++G G + LS QR+R+ IA L+ + ++ +DE T+ LD + I A+ +
Sbjct: 471 -DTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE-LQ 527
Query: 379 TGRTIVCTIHQPSIDIFEAFDEV 401
+T++ H+ S E DE+
Sbjct: 528 KNKTVLVIAHRLS--TIEQADEI 548
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 32/211 (15%)
Query: 186 YYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTT 243
++ TPLE + L +V+ + G + G +G+GK+TLL ++AG T+
Sbjct: 14 FHRGTPLEKKA----------LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 63
Query: 244 GSM--EGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSA---WLRLAPEIN 298
G + +GE K GY +++ Y E V + V F+ + P
Sbjct: 64 GDVLYDGERK-KGY-EIRRNIGIAFQYPEDQFFAE---RVFDEVAFAVKNFYPDRDPVPL 118
Query: 299 SKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358
K EFV ++ D KD +P LS +++R+ IA +V P I+ +DEP
Sbjct: 119 VKKAMEFVG-----LDFDSFKDR---VPFF--LSGGEKRRVAIASVIVHEPDILILDEPL 168
Query: 359 TGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ 389
GLD ++R V+ G+T++ H
Sbjct: 169 VGLDREGKTDLLRIVEKWKTLGKTVILISHD 199
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 32/211 (15%)
Query: 186 YYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTT 243
++ TPLE + L +V+ + G + G +G+GK+TLL ++AG T+
Sbjct: 12 FHRGTPLEKKA----------LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 244 GSM--EGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSA---WLRLAPEIN 298
G + +GE K GY +++ Y E V + V F+ + P
Sbjct: 62 GDVLYDGERK-KGY-EIRRNIGIAFQYPEDQFFAE---RVFDEVAFAVKNFYPDRDPVPL 116
Query: 299 SKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358
K EFV ++ D KD +P LS +++R+ IA +V P I+ +DEP
Sbjct: 117 VKKAMEFVG-----LDFDSFKDR---VPFF--LSGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 359 TGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ 389
GLD ++R V+ G+T++ H
Sbjct: 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHD 197
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 37/227 (16%)
Query: 179 VAFQDLKY-YIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVL 237
V FQD+ + Y + P +++L +T +L PG +TAL+G +G+GK+T+ +L
Sbjct: 17 VKFQDVSFAYPNHP-----------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 238 AG-RKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV-EESVIFSAWLR--L 293
+ TG G++ + G P VQ + +H+ V +E ++F R +
Sbjct: 66 QNLYQPTG---GKVLLDGEPLVQ---------YDHHYLHTQVAAVGQEPLLFGRSFRENI 113
Query: 294 APEI-NSKTKAEFVNEVLETIELDGIK------DSLVGIPGVNGLSTEQRKRLTIAVELV 346
A + + T E +E+ D I D+ VG G N LS QR+ + +A L+
Sbjct: 114 AYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETG-NQLSGGQRQAVALARALI 172
Query: 347 ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSI 392
P ++ +D T+ LDA + R + + RT++ Q S+
Sbjct: 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL 219
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ 389
LS Q++R++IA L P ++ DEPT+ LD ++R ++ + + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 37/227 (16%)
Query: 179 VAFQDLKY-YIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVL 237
V FQD+ + Y + P +++L +T +L PG +TAL+G +G+GK+T+ +L
Sbjct: 17 VKFQDVSFAYPNHP-----------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 238 AG-RKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV-EESVIFSAWLR--L 293
+ TG G++ + G P VQ + +H+ V +E ++F R +
Sbjct: 66 QNLYQPTG---GKVLLDGEPLVQ---------YDHHYLHTQVAAVGQEPLLFGRSFRENI 113
Query: 294 APEI-NSKTKAEFVNEVLETIELDGIK------DSLVGIPGVNGLSTEQRKRLTIAVELV 346
A + + T E +E+ D I D+ VG G N L+ QR+ + +A L+
Sbjct: 114 AYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETG-NQLAVGQRQAVALARALI 172
Query: 347 ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSI 392
P ++ +D T+ LDA + R + + RT++ Q S+
Sbjct: 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL 219
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 14/190 (7%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETF 262
K +L ++ + G + L+G +GAGKTT L +++ S G + + G V+E
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS--GIVTVFGKNVVEEPH 84
Query: 263 ---ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
+S E+ + +E +LR + + +E V E+ G+
Sbjct: 85 EVRKLISYLPEEAGAYRNMQGIE-------YLRFVAGFYASSSSEIEEMVERATEIAGLG 137
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
+ + V+ S ++L IA L+ NP + +DEPT+GLD A + + +K
Sbjct: 138 EKIK--DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 195
Query: 380 GRTIVCTIHQ 389
G TI+ + H
Sbjct: 196 GLTILVSSHN 205
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK--TTGSME-- 247
+++ + G ++ +L ++ + G L G++GAGKTTLL++L + T+G++
Sbjct: 22 IQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 248 ----GEIKIGGYPKVQETFARVSGYCEQTDIHSPQI--TVEESVIFSAWLRLAPEINSKT 301
G++ GY ET + G+ + + Q V + VI A+ + +
Sbjct: 82 GKXPGKV---GYSA--ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIG--VYQDI 134
Query: 302 KAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361
E NE + ++L G G LST +++R+ IA L P ++ +DEP GL
Sbjct: 135 DDEIRNEAHQLLKLVGXSAKAQQYIGY--LSTGEKQRVXIARALXGQPQVLILDEPAAGL 192
Query: 362 D 362
D
Sbjct: 193 D 193
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 21/204 (10%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETF 262
+ + L V+ S+ G +T ++G +G+GK+TL++V+ G + EG + +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG--FLKADEGRVYFENKDITNKEP 76
Query: 263 ARVSGYCEQTDIHSPQ----ITVEESVIFSAWLRLAPEINS----------KTKAEFVNE 308
A + Y +PQ +TV E+++ +NS + E +
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 309 VLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 368
+LE ++L + D G LS Q K + I L+ NP +I MDEP G+ A
Sbjct: 137 ILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 369 IMRAVKNVVDTGRTIVCTIHQPSI 392
I V + G T + H+ I
Sbjct: 192 IFNHVLELKAKGITFLIIEHRLDI 215
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSG----Y 268
+ PG + A+MG +G+GK+TL LAGR+ G ++ G + + +G
Sbjct: 23 DVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFM 82
Query: 269 CEQTDIHSPQITVEESVIFSAWLRLAPEINSKT--KAEFVNEVLETIELDGIKDSLVGIP 326
Q + P ++ + + +A + +T + +F + + E I L + + L+
Sbjct: 83 AFQYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS 141
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCT 386
G S ++KR I V P + +DE +GLD A ++ V ++ D R+ +
Sbjct: 142 VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV 201
Query: 387 IHQPSI 392
H I
Sbjct: 202 THYQRI 207
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSG----Y 268
+ PG + A+MG +G+GK+TL LAGR+ G ++ G + + +G
Sbjct: 42 DVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFM 101
Query: 269 CEQTDIHSPQITVEESVIFSAWLRLAPEINSKT--KAEFVNEVLETIELDGIKDSLVGIP 326
Q + P ++ + + +A + +T + +F + + E I L + + L+
Sbjct: 102 AFQYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS 160
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCT 386
G S ++KR I V P + +DE +GLD A ++ V ++ D R+ +
Sbjct: 161 VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV 220
Query: 387 IHQPSI 392
H I
Sbjct: 221 THYQRI 226
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 44/203 (21%)
Query: 179 VAFQDLKY-YIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVL 237
V FQD+ + Y + P + +L +T +LRPG +TAL+G +G+GK+T+ +L
Sbjct: 15 VQFQDVSFAYPNRP-----------DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 63
Query: 238 AG-RKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV-EESVIFSAWLR--L 293
+ TG G++ + G P Q E +H V +E +F L+ +
Sbjct: 64 QNLYQPTG---GQLLLDGKPLPQ---------YEHRYLHRQVAAVGQEPQVFGRSLQENI 111
Query: 294 APEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE-----------QRKRLTIA 342
A + K E E+ G + G+P G TE QR+ + +A
Sbjct: 112 AYGLTQKPTME---EITAAAVKSGAHSFISGLP--QGYDTEVDEAGSQLSGGQRQAVALA 166
Query: 343 VELVANPSIIFMDEPTTGLDARA 365
L+ P ++ +D+ T+ LDA +
Sbjct: 167 RALIRKPCVLILDDATSALDANS 189
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 23/160 (14%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L D+ + G L A+ G +GAGKT+LL ++ G EG+IK G R+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 266 SGYCEQTDIHSPQITVEESVIFSA---WLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
S +C Q P T++E++IF R I + E +++ E KD++
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNI 122
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
V G LS QR R+++A + + + +D P LD
Sbjct: 123 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 162
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 23/160 (14%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L D+ + G L A+ G +GAGKT+LL ++ G EG+IK G R+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 83
Query: 266 SGYCEQTDIHSPQITVEESVIFSA---WLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
S +C Q P T++E++IF R I + E +++ E KD++
Sbjct: 84 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNI 134
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
V G LS QR R+++A + + + +D P LD
Sbjct: 135 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 174
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 20/181 (11%)
Query: 220 TALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY---PKVQETFARVSGYCEQTDIHS 276
L+G +GAGK+ L+++AG GE+++ G P E R G+ Q
Sbjct: 27 CVLLGPTGAGKSVFLELIAG--IVKPDRGEVRLNGADITPLPPER--RGIGFVPQDYALF 82
Query: 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336
P ++V ++ + LR + + + E L GI L P LS +R
Sbjct: 83 PHLSVYRNIAYG--LRNVERVERDRRVREMAEKL------GIAHLLDRKPA--RLSGGER 132
Query: 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFE 396
+R+ +A LV P ++ +DEP + +D + ++M ++ V R I + D+ E
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV---QREFDVPILHVTHDLIE 189
Query: 397 A 397
A
Sbjct: 190 A 190
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 31/209 (14%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETF 262
+ + L V+ S+ G +T ++G +G+GK+TL++V+ G + EG + +
Sbjct: 19 EFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITG--FLKADEGRVYFENKDITNKEP 76
Query: 263 ARVSGYCEQTDIHSPQ----ITVEE---------------SVIFSAWLRLAPEINSKTKA 303
A + Y +PQ +TV E S+ + W+ E+ K
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKA-- 134
Query: 304 EFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363
++LE ++L + D G LS Q K + I L+ NP +I MDEP G+
Sbjct: 135 ---FKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Query: 364 RAAAIIMRAVKNVVDTGRTIVCTIHQPSI 392
A I V + G T + H+ I
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDI 215
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 22/159 (13%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L D+ + G L A+ G +GAGKT+LL ++ G EG+IK G R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 266 SGYCEQTDIHSPQITVEESVIFSAW--LRLAPEINSKTKAEFVNEVLETIELDGIKDSLV 323
S +C Q P T++E++I ++ R I + E +++ E KD++V
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNIV 152
Query: 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
G LS QR R+++A + + + +D P LD
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 31/209 (14%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETF 262
+ + L V+ S+ G +T ++G +G+GK+TL++V+ G + EG + +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG--FLKADEGRVYFENKDITNKEP 76
Query: 263 ARVSGYCEQTDIHSPQ----ITVEE---------------SVIFSAWLRLAPEINSKTKA 303
A + Y +PQ +TV E S+ + W+ E+ K
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKA-- 134
Query: 304 EFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363
++LE ++L + D G LS Q K + I L+ NP +I MD+P G+
Sbjct: 135 ---FKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAP 186
Query: 364 RAAAIIMRAVKNVVDTGRTIVCTIHQPSI 392
A I V + G T + H+ I
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDI 215
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L +T S+ G L A++G G GK++LL L +EG + I G V+
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---------SVA 69
Query: 267 GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
+Q I + ++ E+++F L P S +A + LE L + +G
Sbjct: 70 YVPQQAWIQND--SLRENILFGCQLE-EPYYRSVIQACALLPDLEI--LPSGDRTEIGEK 124
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
GVN LS Q++R+++A + +N I D+P + +DA I V
Sbjct: 125 GVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 22/159 (13%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L D+ + G L A+ G +GAGKT+LL ++ G EG+IK G R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 266 SGYCEQTDIHSPQITVEESVIFSAW--LRLAPEINSKTKAEFVNEVLETIELDGIKDSLV 323
S +C Q P T++E++I ++ R I + E +++ E KD++V
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNIV 152
Query: 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
G LS QR R+++A + + + +D P LD
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 90/216 (41%), Gaps = 43/216 (19%)
Query: 174 FEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDV--------TGSLRPGVLTALMGV 225
F P + F L +D ER + RL+ D G +R G + ++G
Sbjct: 336 FRPYEIRFTKLSERVDV-----ERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGP 390
Query: 226 SGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283
+G GKTT + +LAG T G +E ++ + P Q A G
Sbjct: 391 NGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG---------------- 432
Query: 284 SVIFSAWLRLAPEINSKTKAEFVN-EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIA 342
+ + L+ +SK + F E+L+ + + + D V LS + +R+ IA
Sbjct: 433 ----TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIA 483
Query: 343 VELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378
L+ + I +DEP+ LD + RA++++++
Sbjct: 484 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 519
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 84/189 (44%), Gaps = 22/189 (11%)
Query: 214 LRPGVLTALMGVSGAGKTTLLDVLAGR------KTTGSMEGEIKIGGYPKVQETFARVSG 267
++ G++ ++G +G GKTT + +LAG+ + S + I+ ++Q F R+
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173
Query: 268 YCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL----V 323
E + PQ ++ L P+ E + +V E + + + L V
Sbjct: 174 -GEIRPVVKPQ-----------YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENV 221
Query: 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTI 383
++ LS + +R+ IA L+ F DEP++ LD R + R ++ + + G+ +
Sbjct: 222 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 281
Query: 384 VCTIHQPSI 392
+ H ++
Sbjct: 282 LVVEHDLAV 290
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 90/216 (41%), Gaps = 43/216 (19%)
Query: 174 FEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDV--------TGSLRPGVLTALMGV 225
F P + F L +D ER + RL+ D G +R G + ++G
Sbjct: 322 FRPYEIRFTKLSERVDV-----ERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGP 376
Query: 226 SGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283
+G GKTT + +LAG T G +E ++ + P Q A G
Sbjct: 377 NGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG---------------- 418
Query: 284 SVIFSAWLRLAPEINSKTKAEFVN-EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIA 342
+ + L+ +SK + F E+L+ + + + D V LS + +R+ IA
Sbjct: 419 ----TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIA 469
Query: 343 VELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378
L+ + I +DEP+ LD + RA++++++
Sbjct: 470 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 505
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 84/189 (44%), Gaps = 22/189 (11%)
Query: 214 LRPGVLTALMGVSGAGKTTLLDVLAGR------KTTGSMEGEIKIGGYPKVQETFARVSG 267
++ G++ ++G +G GKTT + +LAG+ + S + I+ ++Q F R+
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
Query: 268 YCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL----V 323
E + PQ ++ L P+ E + +V E + + + L V
Sbjct: 160 -GEIRPVVKPQ-----------YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENV 207
Query: 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTI 383
++ LS + +R+ IA L+ F DEP++ LD R + R ++ + + G+ +
Sbjct: 208 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 267
Query: 384 VCTIHQPSI 392
+ H ++
Sbjct: 268 LVVEHDLAV 276
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 22/159 (13%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L D+ + G L A+ G +GAGKT+LL ++ G EG+IK G R+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 266 SGYCEQTDIHSPQITVEESVIFSAW--LRLAPEINSKTKAEFVNEVLETIELDGIKDSLV 323
S +C Q P T++E++I ++ R I + E +++ E KD++V
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNIV 122
Query: 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
G LS QR R+++A + + + +D P LD
Sbjct: 123 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 161
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 30/152 (19%)
Query: 222 LMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281
++G +GAGKT L+++AG S G I + G + TD+ SP+
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDS--GRILLDGK--------------DVTDL-SPE-KH 72
Query: 282 EESVIFSAWLRLAPEINSKTKAEF---------VNEVLETIELDGIKDSLVGIPGVNGLS 332
+ + ++ + L P +N K EF VL+T I+ L P LS
Sbjct: 73 DIAFVYQNY-SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT--LS 129
Query: 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
+++R+ +A LV NP I+ +DEP + LD R
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPR 161
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 27/208 (12%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK 251
LE + ++ L+ DV+ + G + A++G +GAGK+TLL +L G + GE
Sbjct: 12 LEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS--HGECH 69
Query: 252 IGG------YPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEF 305
+ G PK AR Q + +V E + AP S+ + +
Sbjct: 70 LLGQNLNSWQPK---ALARTRAVMRQYSELAFPFSVSEVIQMGR----APYGGSQDR-QA 121
Query: 306 VNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA------NPSIIFMDEPTT 359
+ +V+ + + + LS +++R+ +A L P +F+DEPT+
Sbjct: 122 LQQVMAQTDCLALAQRDYRV-----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTS 176
Query: 360 GLDARAAAIIMRAVKNVVDTGRTIVCTI 387
LD +R ++ + VC +
Sbjct: 177 ALDLYHQQHTLRLLRQLTRQEPLAVCCV 204
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 23/160 (14%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L D+ + G L A+ G +GAGKT+LL ++ G EG+IK G R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 266 SGYCEQTDIHSPQITVEESVIFSA---WLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
S +C Q P T++E++IF R I + E +++ E KD++
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNI 152
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
V G LS Q+ ++++A + + + +D P LD
Sbjct: 153 VLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 23/160 (14%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L D+ + G L A+ G +GAGKT+LL ++ G EG+IK G R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 266 SGYCEQTDIHSPQITVEESVIFSA---WLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
S +C Q P T++E++I R I + E +++ E KD++
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNI 152
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
V G LS QR R+++A + + + +D P LD
Sbjct: 153 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 18/127 (14%)
Query: 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337
+TVE+++ F A + P+I K LET+ G+ +G P LS + +
Sbjct: 504 DMTVEDALDFFASI---PKIKRK---------LETLYDVGLGYMKLGQPATT-LSGGEAQ 550
Query: 338 RLTIAVELVANPS---IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDI 394
R+ +A EL + + +DEPTTGL A ++ + +VD G T++ H ++D+
Sbjct: 551 RVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDV 608
Query: 395 FEAFDEV 401
+ D +
Sbjct: 609 IKTADYI 615
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ 389
QR RL + + +DEP+ GL R ++ +K++ D G T++ H
Sbjct: 209 QRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L ++ ++ G + A+ G +G+GKT+LL ++ G + EG IK G RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE--LEASEGIIKHSG---------RV 101
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
S +C Q P T++E++IF + + ++ + E D ++++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLGE 156
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
GV LS QR R+++A + + + +D P LD
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L ++ ++ G + A+ G +G+GKT+LL ++ G + EG IK G RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE--LEASEGIIKHSG---------RV 101
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
S +C Q P T++E++IF + + ++ + E D ++++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLGE 156
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
GV LS QR R+++A + + + +D P LD
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 18/125 (14%)
Query: 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337
+TVE+++ F A + P+I K LET+ G+ +G P LS + +
Sbjct: 806 DMTVEDALDFFASI---PKIKRK---------LETLYDVGLGYMKLGQPATT-LSGGEAQ 852
Query: 338 RLTIAVELVANPS---IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDI 394
R+ +A EL + + +DEPTTGL A ++ + +VD G T++ H ++D+
Sbjct: 853 RVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDV 910
Query: 395 FEAFD 399
+ D
Sbjct: 911 IKTAD 915
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ 389
QR RL + + +DEP+ GL R ++ +K++ D G T++ H
Sbjct: 511 QRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL 339
TVE+++ F A + P+I K LET+ G+ +G P LS + +R+
Sbjct: 808 TVEDALDFFASI---PKIKRK---------LETLYDVGLGYXKLGQPATT-LSGGEAQRV 854
Query: 340 TIAVELVANPS---IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFE 396
+A EL + + +DEPTTGL A ++ + +VD G T++ H ++D+ +
Sbjct: 855 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDVIK 912
Query: 397 AFD 399
D
Sbjct: 913 TAD 915
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 128/338 (37%), Gaps = 94/338 (27%)
Query: 148 GEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLL 207
G IV + NK+S G + E + + ++ +D ++ G E LR +
Sbjct: 604 GRIVHSGPYDELLRNKDSITGAYLSGRESIEIPA--IRRSVDPRRQLTVVGAREHNLRGI 661
Query: 208 YDVTGSLRPGVLTALMGVSGAGKTTLL-DVLA--------------GRKT---------- 242
DV+ L GVLT++ GVSG+GK+TL+ D+LA GR T
Sbjct: 662 -DVSFPL--GVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718
Query: 243 --------------------TGSMEG---------EIKIGGYPKVQETFARVSGYCEQTD 273
TG + E K+ GY + +F G CE
Sbjct: 719 LVRVDQSPIGRTPRSNPATYTGVFDKIRTLFAATTEAKVRGYQPGRFSFNVKGGRCEACT 778
Query: 274 IHS---------PQITVEESVIFSA-WLRLAPEINSKTK-------------AEF----- 305
P + V V A + R E++ K K AEF
Sbjct: 779 GDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIA 838
Query: 306 -VNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP---SIIFMDEPTTGL 361
V+ L T+ G+ +G P LS + +R+ +A EL ++ +DEPTTGL
Sbjct: 839 GVHRYLRTLVDVGLGYVRLGQPAPT-LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGL 897
Query: 362 DARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFD 399
++ + +VD G T++ H ++D+ + D
Sbjct: 898 HFDDIRKLLNVINGLVDKGNTVIVIEH--NLDVIKTSD 933
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 22/159 (13%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L D+ + G L A+ G +GAGKT+LL ++ G EG+IK G R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 266 SGYCEQTDIHSPQITVEESVIFSAW--LRLAPEINSKTKAEFVNEVLETIELDGIKDSLV 323
S +C Q P T++E++I ++ R I + E +++ E KD++V
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAE-------KDNIV 152
Query: 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
G LS Q+ ++++A + + + +D P LD
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLD 191
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 78/206 (37%), Gaps = 51/206 (24%)
Query: 215 RPGVLTALMGVSGAGKTTLLDVLAGRKT----------------------------TGSM 246
RPG + L+G +G GK+T L +LAG++ T +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 247 EGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFV 306
E +IK P+ + R I P V E L+L E E V
Sbjct: 161 EDDIKAIIKPQYVDNIPRA--------IKGPVQKVGE------LLKLRME----KSPEDV 202
Query: 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
++ ++L+ + + LS + +R I + V + DEP++ LD +
Sbjct: 203 KRYIKILQLENVLKR-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257
Query: 367 AIIMRAVKNVVDTGRTIVCTIHQPSI 392
+ +++++ + ++C H S+
Sbjct: 258 LNAAQIIRSLLAPTKYVICVEHDLSV 283
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 30/169 (17%)
Query: 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQ 271
G + +MG +G GKTTL+ +LAG + K+ K Q+ + G Q
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQ 432
Query: 272 TDIHSPQITVEESVIFSAWLR---LAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328
+F +R L P +F +V++ + +D I D V
Sbjct: 433 --------------LFFKKIRGQFLNP--------QFQTDVVKPLRIDDIIDQ-----EV 465
Query: 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV 377
LS + +R+ I + L I +DEP+ LD+ I + ++ +
Sbjct: 466 QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI 514
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 26/180 (14%)
Query: 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS 276
G + L+G +GAGKTT L +AG + +G+I G Q+ + + + I
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAG--LVRAQKGKIIFNG----QDITNKPAHVINRXGIAL 85
Query: 277 --------PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI--ELDGIKDSLVGIP 326
P++TV E++ A+ N K K E + LE I +K+ L +
Sbjct: 86 VPEGRRIFPELTVYENLXXGAY-------NRKDK-EGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCT 386
G LS +++ L I L + P ++ DEP+ GL + + ++ + G TI+
Sbjct: 138 GT--LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLV 195
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 21/171 (12%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L +T ++ G + G +G GKTTLL ++ ++GEI G P +V
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST--YLKPLKGEIIYNGVP-----ITKV 76
Query: 266 SG---YCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
G + + I +I+VE+ + A L K + + LE++E+ +K L
Sbjct: 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKKL 131
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
LS +R+ +A L+ N I +D+P +D + +++++
Sbjct: 132 ------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 308 EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367
E+ E + G+ +V + GLS Q+ +L +A P +I +DEPT LD +
Sbjct: 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLG 938
Query: 368 IIMRAVK 374
+ +A+K
Sbjct: 939 ALSKALK 945
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 26/141 (18%)
Query: 222 LMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281
+ G +G GK+TL+ +A + + G+P +E + Y E H T
Sbjct: 466 ICGPNGCGKSTLMRAIANGQ----------VDGFPTQEECR---TVYVE----HDIDGTH 508
Query: 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTI 341
++ + L E TK ++++E G D ++ +P ++ LS + +L +
Sbjct: 509 SDTSV----LDFVFESGVGTKEAIKDKLIEF----GFTDEMIAMP-ISALSGGWKMKLAL 559
Query: 342 AVELVANPSIIFMDEPTTGLD 362
A ++ N I+ +DEPT LD
Sbjct: 560 ARAVLRNADILLLDEPTNHLD 580
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 221 ALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV----QETFARVSGYCEQT 272
A++G +GAGK+TL++VL G S GE+ ++ Q FA + + ++T
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTS--GEVYTHENCRIAYIKQHAFAHIESHLDKT 756
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 309 VLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP---SIIFMDEPTTGLDARA 365
L+T+ G+ +G P LS + +R+ +A EL + ++ +DEPTTGL
Sbjct: 710 ALDTLREVGLGYLRLGQPATE-LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPAD 768
Query: 366 AAIIMRAVKNVVDTGRTIVCTIHQ 389
+ R + +VD G T++ H+
Sbjct: 769 VERLQRQLVKLVDAGNTVIAVEHK 792
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 24/160 (15%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L ++ ++ G + A+ G +G+GKT+LL ++ G + EG IK G RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE--LEASEGIIKHSG---------RV 101
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKT---KAEFVNEVLETIELDGIKDSL 322
S +C Q P T++E++I ++ E K+ + ++ + E D +++
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSY----DEYRYKSVVKACQLQQDITKFAEQD---NTV 152
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+G GV LS QR R+++A + + + +D P LD
Sbjct: 153 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 308 EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367
E+ E G+ +V + GLS Q+ +L +A P +I +DEPT LD +
Sbjct: 879 EIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLG 938
Query: 368 IIMRAVK 374
+ +A+K
Sbjct: 939 ALSKALK 945
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
G D + P ++ LS + +L +A ++ N I+ +DEPT LD
Sbjct: 536 GFTDEXIAXP-ISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 221 ALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV----QETFARVSGYCEQT 272
A++G +GAGK+TL++VL G S GE+ ++ Q FA + + ++T
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTS--GEVYTHENCRIAYIKQHAFAHIESHLDKT 756
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 308 EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367
E+ E G+ +V + GLS Q+ +L +A P +I +DEPT LD +
Sbjct: 873 EIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLG 932
Query: 368 IIMRAVK 374
+ +A+K
Sbjct: 933 ALSKALK 939
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
G D + P ++ LS + +L +A ++ N I+ +DEPT LD
Sbjct: 530 GFTDEXIAXP-ISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 221 ALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV----QETFARVSGYCEQT 272
A++G +GAGK+TL++VL G S GE+ ++ Q FA + + ++T
Sbjct: 697 AVIGPNGAGKSTLINVLTGELLPTS--GEVYTHENCRIAYIKQHAFAHIESHLDKT 750
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L ++ ++ G + A+ G +G+GKT+LL ++ G + EG IK G RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE--LEASEGIIKHSG---------RV 101
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
S +C Q P T++E++I + + ++ + E D ++++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLGE 156
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
GV LS QR R+++A + + + +D P LD
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 19/158 (12%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L ++ ++ G + A+ G +G+GKT+LL ++ G EG IK G RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKA-EFVNEVLETIELDGIKDSLVG 324
S +C Q P T++E++I S S KA + ++ + E D ++++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENII-SGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLG 155
Query: 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
GV LS QR R+++A + + + +D P LD
Sbjct: 156 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR 371
LS ++R+ IA+ L+ +P ++ +DEPT+ LD A I++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSI 392
QR RL + I +DEPT GL R +++ +K + D G T++ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 308 EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS---IIFMDEPTTGLDAR 364
+VL + L +K +G P LS + +R+ +A EL + + +DEPT GL
Sbjct: 787 QVLHDVGLGYVK---LGQPATT-LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFE 842
Query: 365 AAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
++ + +VD G T++ H ++D+ + D +
Sbjct: 843 DVRKLVEVLHRLVDRGNTVIVIEH--NLDVIKNADHI 877
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 338 RLTIAVELVANP-SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFE 396
RL IA L+ N I +DEPT LD A + + V + I+ T H+ D+ +
Sbjct: 294 RLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVAD 353
Query: 397 AFDEVKQ 403
VK+
Sbjct: 354 VIINVKK 360
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 24/185 (12%)
Query: 222 LMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281
++G +G+GKTTLL ++G G I I G ++ Y + + P+
Sbjct: 35 ILGPNGSGKTTLLRAISG---LLPYSGNIFINGME-----VRKIRNYIRYS-TNLPE-AY 84
Query: 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL--DGIKDSLVGIPGVNGLSTEQRKRL 339
E V + + L E+ + F+ E+L+ ++L + ++ L LS Q +
Sbjct: 85 EIGVTVNDIVYLYEELKGLDRDLFL-EMLKALKLGEEILRRKLY------KLSAGQSVLV 137
Query: 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFD 399
++ L + P I+ +DEP +DA +I R +K + G+ + H+ +D+ +
Sbjct: 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHE--LDMLNLYK 192
Query: 400 EVKQF 404
E K +
Sbjct: 193 EYKAY 197
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLR 215
A+ D+KYY D+P+ ++ RGF +D T ++
Sbjct: 417 AYLDMKYYSDSPIGLQWRGFVNTNRAYNWDPTDCIK 452
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate
Regulatory Protein (Bt4638) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 354 MDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404
MD+ G+++ A I++ + + ++G+ + IH+ +I+I +A DE++ F
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETF 153
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLT--IAVELVANPSIIFMDEPTTGLDARAAAIIMR 371
+L+ I D L+ I ++ LST ++ L + E A + ++ G + + II++
Sbjct: 331 DLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ---GEEGTSWYIILK 387
Query: 372 AVKNVVDTGRTIVCTIHQ 389
NVV G+ +VCT+H+
Sbjct: 388 GSVNVVIYGKGVVCTLHE 405
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLT--IAVELVANPSIIFMDEPTTGLDARAAAIIMR 371
+L+ I D L+ I ++ LST ++ L + E A + ++ G + + II++
Sbjct: 331 DLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ---GEEGTSWYIILK 387
Query: 372 AVKNVVDTGRTIVCTIHQ 389
NVV G+ +VCT+H+
Sbjct: 388 GSVNVVIYGKGVVCTLHE 405
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLT--IAVELVANPSIIFMDEPTTGLDARAAAIIMR 371
+L+ I D L+ I ++ LST ++ L + E A + ++ G + + II++
Sbjct: 26 DLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ---GEEGTSWYIILK 82
Query: 372 AVKNVVDTGRTIVCTIHQ 389
NVV G+ +VCT+H+
Sbjct: 83 GSVNVVIYGKGVVCTLHE 100
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLT--IAVELVANPSIIFMDEPTTGLDARAAAIIMR 371
+L+ I D L+ I ++ LST ++ L + E A + ++ G + + II++
Sbjct: 331 DLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ---GEEGTSWYIILK 387
Query: 372 AVKNVVDTGRTIVCTIHQ 389
NVV G+ +VCT+H+
Sbjct: 388 GSVNVVIYGKGVVCTLHE 405
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEI--KIGGY 255
RP V+T +MG GKTTLLD + K T G I IG Y
Sbjct: 7 RPPVVT-IMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAY 48
>pdb|2B1X|A Chain A, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|C Chain C, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|E Chain E, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B24|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|C Chain C, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|E Chain E, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
Length = 470
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 141 VSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVAFQ----DLKYYIDTPLEMRE 196
+D+ ++ K PM N SYKG + +P + + DLK+Y+D L+ +
Sbjct: 126 AGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHADSLEDYLGDLKFYLDIVLDRSD 185
Query: 197 RGF 199
G
Sbjct: 186 AGL 188
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
G+ RP VL ++GV+G GKTT L LA R
Sbjct: 112 GNSRPAVLM-IVGVNGGGKTTTLGKLANR 139
>pdb|1M03|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313a)
In Complex With Product (Glcnac)
Length = 512
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 174 FEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGV 225
P + D+KY DTPL + G+ E + +D G L A+ GV
Sbjct: 392 LSPADRTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPAGYLPGAPADAVRGV 443
>pdb|1M04|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313n)
In Complex With Product (Glcnac)
Length = 512
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 174 FEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGV 225
P + D+KY DTPL + G+ E + +D G L A+ GV
Sbjct: 392 LSPADRTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPAGYLPGAPADAVRGV 443
>pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus
Beta-N-Acetylhexosaminidase
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,
3r,4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1M01|A Chain A, Wildtype Streptomyces Plicatus Beta-Hexosaminidase In
Complex With Product (Glcnac)
Length = 512
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 174 FEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGV 225
P + D+KY DTPL + G+ E + +D G L A+ GV
Sbjct: 392 LSPADRTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPAGYLPGAPADAVRGV 443
>pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD 316
+V++ + R+ E D P V + ++ W + PE K+ A + ++V+ +EL
Sbjct: 853 EVEKEYGRLVKNKEMRDSKDP-YPVRVNQVYEKWCAITPEAMDKSGANYDSKVIRLLELS 911
Query: 317 GIKD 320
+ D
Sbjct: 912 FLAD 915
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 214 LRPGVLTALMGVSGAGKTTLLDVLAGRK 241
LR G+ + G AGK++LL+ LAGR+
Sbjct: 4 LREGMKVVIAGRPNAGKSSLLNALAGRE 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,010,726
Number of Sequences: 62578
Number of extensions: 441742
Number of successful extensions: 1523
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1306
Number of HSP's gapped (non-prelim): 166
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)