Query 015591
Match_columns 404
No_of_seqs 439 out of 4213
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 1.3E-87 2.9E-92 725.4 23.6 394 1-404 588-1004(1391)
2 PLN03140 ABC transporter G fam 100.0 1.7E-74 3.8E-79 655.7 37.9 404 1-404 666-1093(1470)
3 TIGR00956 3a01205 Pleiotropic 100.0 4.7E-70 1E-74 620.7 37.9 392 1-404 549-976 (1394)
4 COG1126 GlnQ ABC-type polar am 100.0 1.2E-51 2.7E-56 372.4 20.3 202 179-403 3-208 (240)
5 KOG0061 Transporter, ABC super 100.0 7.6E-51 1.6E-55 430.1 24.2 222 175-404 22-244 (613)
6 COG1116 TauB ABC-type nitrate/ 100.0 5.5E-50 1.2E-54 371.0 20.8 201 178-404 3-204 (248)
7 COG1136 SalX ABC-type antimicr 100.0 5.4E-49 1.2E-53 363.6 22.6 204 179-403 2-214 (226)
8 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 7.8E-49 1.7E-53 367.5 22.5 205 178-403 4-211 (254)
9 COG1135 AbcC ABC-type metal io 100.0 1.2E-48 2.5E-53 369.6 19.9 207 179-404 2-215 (339)
10 COG1131 CcmA ABC-type multidru 100.0 9.8E-48 2.1E-52 373.6 22.5 202 178-403 4-209 (293)
11 PLN03211 ABC transporter G-25; 100.0 2.9E-47 6.3E-52 406.4 27.9 229 175-404 36-280 (659)
12 COG1127 Ttg2A ABC-type transpo 100.0 7.5E-48 1.6E-52 352.8 19.4 203 178-403 8-218 (263)
13 COG1125 OpuBA ABC-type proline 100.0 5.5E-48 1.2E-52 355.5 17.8 202 179-404 2-209 (309)
14 COG1120 FepC ABC-type cobalami 100.0 1.4E-47 3.1E-52 360.6 20.0 206 178-404 2-212 (258)
15 COG3842 PotA ABC-type spermidi 100.0 3.4E-47 7.3E-52 372.7 19.4 204 178-404 5-210 (352)
16 COG3839 MalK ABC-type sugar tr 100.0 4.7E-47 1E-51 369.8 20.1 202 178-403 3-206 (338)
17 KOG0058 Peptide exporter, ABC 100.0 3.8E-47 8.3E-52 392.6 19.5 209 176-403 463-674 (716)
18 COG2884 FtsE Predicted ATPase 100.0 8.2E-47 1.8E-51 334.2 17.2 196 179-398 2-203 (223)
19 COG2274 SunT ABC-type bacterio 100.0 1.9E-46 4.1E-51 399.1 22.3 211 174-404 467-680 (709)
20 COG1118 CysA ABC-type sulfate/ 100.0 1.1E-46 2.3E-51 355.5 17.4 194 202-404 13-211 (345)
21 COG1117 PstB ABC-type phosphat 100.0 3.7E-46 8.1E-51 335.7 17.9 202 178-400 7-217 (253)
22 PRK13537 nodulation ABC transp 100.0 2.8E-45 6.1E-50 358.9 24.4 202 178-403 7-210 (306)
23 TIGR00960 3a0501s02 Type II (G 100.0 3.4E-45 7.4E-50 340.7 23.0 203 179-403 2-210 (216)
24 TIGR00955 3a01204 The Eye Pigm 100.0 9.9E-46 2.2E-50 393.5 22.0 203 202-404 36-240 (617)
25 COG3638 ABC-type phosphate/pho 100.0 9.4E-46 2E-50 338.1 18.4 206 178-403 3-220 (258)
26 COG4555 NatA ABC-type Na+ tran 100.0 2.3E-46 4.9E-51 334.1 13.6 203 179-404 2-206 (245)
27 cd03261 ABC_Org_Solvent_Resist 100.0 4E-45 8.8E-50 344.6 22.8 201 180-403 2-209 (235)
28 TIGR02314 ABC_MetN D-methionin 100.0 7.8E-45 1.7E-49 359.9 24.1 206 179-404 2-214 (343)
29 COG1122 CbiO ABC-type cobalt t 100.0 5.7E-45 1.2E-49 341.9 20.0 204 178-404 3-212 (235)
30 cd03259 ABC_Carb_Solutes_like 100.0 1.1E-44 2.3E-49 336.7 21.5 200 180-403 2-203 (213)
31 PRK11650 ugpC glycerol-3-phosp 100.0 1.3E-44 2.8E-49 360.6 23.5 203 178-403 3-207 (356)
32 PRK11432 fbpC ferric transport 100.0 1.7E-44 3.6E-49 359.0 24.1 203 178-404 6-210 (351)
33 TIGR03265 PhnT2 putative 2-ami 100.0 1.5E-44 3.2E-49 359.7 23.7 203 178-404 4-208 (353)
34 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.6E-44 3.5E-49 336.5 22.1 205 179-404 1-213 (218)
35 TIGR02673 FtsE cell division A 100.0 2.9E-44 6.4E-49 333.8 22.5 203 179-404 2-210 (214)
36 PRK13536 nodulation factor exp 100.0 4.8E-44 1E-48 354.4 25.3 203 178-404 41-245 (340)
37 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.4E-44 7.3E-49 335.1 22.7 202 180-403 2-204 (220)
38 cd03269 ABC_putative_ATPase Th 100.0 3.5E-44 7.6E-49 332.5 22.5 199 180-403 2-200 (210)
39 TIGR03258 PhnT 2-aminoethylpho 100.0 3.1E-44 6.7E-49 358.2 23.8 203 178-404 5-212 (362)
40 TIGR01288 nodI ATP-binding ABC 100.0 5.3E-44 1.1E-48 349.6 24.1 202 178-403 4-207 (303)
41 cd03292 ABC_FtsE_transporter F 100.0 4.6E-44 9.9E-49 332.4 22.3 202 180-404 2-209 (214)
42 cd03219 ABC_Mj1267_LivG_branch 100.0 5.1E-44 1.1E-48 337.1 22.6 204 180-404 2-216 (236)
43 cd03226 ABC_cobalt_CbiO_domain 100.0 2.9E-44 6.3E-49 332.0 20.1 185 204-403 13-198 (205)
44 cd03265 ABC_DrrA DrrA is the A 100.0 6.3E-44 1.4E-48 333.2 22.4 200 180-403 2-204 (220)
45 PRK10851 sulfate/thiosulfate t 100.0 7.4E-44 1.6E-48 354.7 24.0 205 178-403 2-209 (353)
46 cd03266 ABC_NatA_sodium_export 100.0 6.2E-44 1.4E-48 332.5 21.8 205 179-403 2-208 (218)
47 cd03262 ABC_HisP_GlnQ_permease 100.0 7.7E-44 1.7E-48 330.6 22.3 202 180-404 2-208 (213)
48 cd03301 ABC_MalK_N The N-termi 100.0 7E-44 1.5E-48 331.0 21.8 200 180-403 2-203 (213)
49 cd03296 ABC_CysA_sulfate_impor 100.0 1.1E-43 2.4E-48 335.7 23.2 205 178-403 2-209 (239)
50 cd03268 ABC_BcrA_bacitracin_re 100.0 7E-44 1.5E-48 330.0 21.2 196 180-403 2-198 (208)
51 PRK09452 potA putrescine/sperm 100.0 1.1E-43 2.4E-48 355.5 24.3 203 178-404 14-218 (375)
52 cd03218 ABC_YhbG The ABC trans 100.0 9E-44 2E-48 334.5 22.1 200 180-403 2-205 (232)
53 PRK11607 potG putrescine trans 100.0 1.8E-43 3.9E-48 354.5 25.6 203 178-404 19-223 (377)
54 TIGR02868 CydC thiol reductant 100.0 4.1E-44 8.9E-49 375.3 21.8 195 177-390 333-529 (529)
55 PRK11153 metN DL-methionine tr 100.0 1.3E-43 2.7E-48 352.3 24.0 205 179-403 2-213 (343)
56 TIGR01188 drrA daunorubicin re 100.0 6.7E-44 1.4E-48 348.7 21.6 191 202-403 4-196 (302)
57 cd03256 ABC_PhnC_transporter A 100.0 9E-44 2E-48 336.2 21.7 205 180-404 2-218 (241)
58 PRK11000 maltose/maltodextrin 100.0 1.3E-43 2.8E-48 355.3 24.0 203 178-404 3-207 (369)
59 COG1124 DppF ABC-type dipeptid 100.0 4.8E-44 1E-48 328.9 19.0 205 178-404 3-215 (252)
60 cd03225 ABC_cobalt_CbiO_domain 100.0 9.2E-44 2E-48 329.8 20.6 190 204-404 14-207 (211)
61 cd03235 ABC_Metallic_Cations A 100.0 9.2E-44 2E-48 330.4 20.0 192 203-404 11-205 (213)
62 cd03258 ABC_MetN_methionine_tr 100.0 1.7E-43 3.7E-48 333.0 22.0 205 179-403 2-213 (233)
63 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1E-43 2.3E-48 341.9 20.8 197 196-403 29-233 (269)
64 PRK11174 cysteine/glutathione 100.0 1.7E-43 3.7E-48 375.1 24.4 205 178-404 349-556 (588)
65 cd03234 ABCG_White The White s 100.0 3.2E-43 6.8E-48 329.9 23.2 212 179-404 4-217 (226)
66 cd03224 ABC_TM1139_LivF_branch 100.0 1.6E-43 3.5E-48 330.5 20.9 199 180-404 2-205 (222)
67 PRK10908 cell division protein 100.0 3.4E-43 7.3E-48 328.7 23.0 202 179-403 2-209 (222)
68 PRK11264 putative amino-acid A 100.0 3.6E-43 7.9E-48 334.1 23.4 202 179-403 4-216 (250)
69 cd03260 ABC_PstB_phosphate_tra 100.0 2E-43 4.4E-48 331.2 21.2 201 180-403 2-212 (227)
70 COG1132 MdlB ABC-type multidru 100.0 9.8E-44 2.1E-48 375.5 21.3 207 177-404 327-536 (567)
71 cd03263 ABC_subfamily_A The AB 100.0 2.4E-43 5.2E-48 329.0 21.4 202 179-403 1-204 (220)
72 TIGR02315 ABC_phnC phosphonate 100.0 1.7E-43 3.7E-48 334.9 20.5 205 179-403 2-218 (243)
73 PRK09493 glnQ glutamine ABC tr 100.0 4.5E-43 9.7E-48 331.7 23.2 202 179-403 2-208 (240)
74 PRK09536 btuD corrinoid ABC tr 100.0 3.2E-43 6.8E-48 354.5 23.5 206 178-404 3-212 (402)
75 TIGR03522 GldA_ABC_ATP gliding 100.0 4.1E-43 8.8E-48 343.0 23.4 201 179-404 3-205 (301)
76 PRK11248 tauB taurine transpor 100.0 5.8E-43 1.3E-47 334.2 23.4 199 179-403 2-201 (255)
77 TIGR02211 LolD_lipo_ex lipopro 100.0 6E-43 1.3E-47 326.6 22.9 204 179-403 2-213 (221)
78 cd03257 ABC_NikE_OppD_transpor 100.0 4.6E-43 1E-47 328.5 22.0 207 179-404 2-219 (228)
79 TIGR03608 L_ocin_972_ABC putat 100.0 6E-43 1.3E-47 323.0 22.3 190 203-404 10-206 (206)
80 TIGR01186 proV glycine betaine 100.0 3.5E-43 7.5E-48 350.1 22.2 191 202-403 4-202 (363)
81 PRK13637 cbiO cobalt transport 100.0 5.9E-43 1.3E-47 339.6 23.2 207 179-404 3-218 (287)
82 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.6E-43 5.6E-48 379.9 22.6 204 178-404 451-657 (686)
83 cd03264 ABC_drug_resistance_li 100.0 5.2E-43 1.1E-47 324.9 21.5 198 180-403 2-201 (211)
84 KOG0057 Mitochondrial Fe/S clu 100.0 5.2E-44 1.1E-48 358.5 15.5 207 176-404 349-558 (591)
85 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6.4E-43 1.4E-47 331.1 22.2 200 180-403 2-208 (242)
86 PRK11629 lolD lipoprotein tran 100.0 1.2E-42 2.7E-47 327.3 24.0 205 178-403 5-217 (233)
87 PRK11831 putative ABC transpor 100.0 9.3E-43 2E-47 335.2 23.6 203 178-403 7-216 (269)
88 PRK10895 lipopolysaccharide AB 100.0 9.3E-43 2E-47 329.7 22.2 203 178-403 3-209 (241)
89 PRK13647 cbiO cobalt transport 100.0 9.6E-43 2.1E-47 336.0 22.7 204 178-404 4-211 (274)
90 PRK13634 cbiO cobalt transport 100.0 9E-43 2E-47 338.8 22.6 207 179-404 3-219 (290)
91 TIGR03375 type_I_sec_LssB type 100.0 5.3E-43 1.2E-47 377.9 22.8 208 177-404 462-672 (694)
92 PRK13651 cobalt transporter AT 100.0 1.2E-42 2.5E-47 340.0 22.9 207 179-404 3-238 (305)
93 COG3840 ThiQ ABC-type thiamine 100.0 2.4E-43 5.2E-48 310.1 15.9 184 209-403 17-202 (231)
94 PRK10619 histidine/lysine/argi 100.0 2.4E-42 5.2E-47 330.1 24.2 204 178-404 5-225 (257)
95 PRK13643 cbiO cobalt transport 100.0 1.6E-42 3.5E-47 336.7 23.2 207 179-404 2-217 (288)
96 TIGR00972 3a0107s01c2 phosphat 100.0 2E-42 4.3E-47 328.7 23.4 202 179-403 2-215 (247)
97 PRK11124 artP arginine transpo 100.0 2.1E-42 4.5E-47 327.5 23.3 202 178-403 2-213 (242)
98 KOG0055 Multidrug/pheromone ex 100.0 1.2E-43 2.6E-48 384.8 16.8 211 175-404 347-560 (1228)
99 PRK11176 lipid transporter ATP 100.0 5.7E-43 1.2E-47 370.6 21.7 201 178-404 341-551 (582)
100 PRK13650 cbiO cobalt transport 100.0 1.2E-42 2.6E-47 336.3 21.9 205 178-404 4-213 (279)
101 PRK14247 phosphate ABC transpo 100.0 2.7E-42 5.8E-47 328.3 23.9 204 179-403 4-217 (250)
102 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.8E-42 6E-47 325.6 23.8 200 179-403 2-204 (236)
103 PRK13641 cbiO cobalt transport 100.0 2.1E-42 4.5E-47 335.8 23.0 208 178-404 2-218 (287)
104 PRK11247 ssuB aliphatic sulfon 100.0 1.9E-42 4.1E-47 330.9 22.4 194 178-403 12-206 (257)
105 PRK13543 cytochrome c biogenes 100.0 3.5E-42 7.5E-47 320.4 23.2 200 178-404 11-210 (214)
106 KOG0055 Multidrug/pheromone ex 100.0 5.4E-43 1.2E-47 379.8 20.4 210 175-403 984-1196(1228)
107 TIGR01978 sufC FeS assembly AT 100.0 3E-42 6.4E-47 326.3 22.8 206 180-403 2-217 (243)
108 TIGR01193 bacteriocin_ABC ABC- 100.0 8E-43 1.7E-47 377.4 21.5 206 177-404 472-681 (708)
109 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 9.4E-43 2E-47 377.0 22.0 206 177-404 476-684 (710)
110 PRK10790 putative multidrug tr 100.0 1.6E-42 3.4E-47 368.0 23.3 199 177-404 339-547 (592)
111 PRK13631 cbiO cobalt transport 100.0 2.5E-42 5.4E-47 339.7 23.0 208 178-404 21-249 (320)
112 PRK13646 cbiO cobalt transport 100.0 2.5E-42 5.4E-47 335.1 22.5 208 178-404 2-219 (286)
113 PRK15079 oligopeptide ABC tran 100.0 4.5E-42 9.7E-47 339.3 24.5 218 178-404 8-235 (331)
114 cd03231 ABC_CcmA_heme_exporter 100.0 2.9E-42 6.3E-47 317.9 21.7 194 180-403 2-197 (201)
115 PRK14268 phosphate ABC transpo 100.0 4.3E-42 9.4E-47 328.6 23.6 202 178-403 12-225 (258)
116 PRK13548 hmuV hemin importer A 100.0 3.4E-42 7.4E-47 329.4 22.8 202 179-404 3-214 (258)
117 TIGR03005 ectoine_ehuA ectoine 100.0 3.5E-42 7.5E-47 328.0 22.7 202 179-403 1-219 (252)
118 PRK11300 livG leucine/isoleuci 100.0 3.5E-42 7.6E-47 328.3 22.5 205 178-403 5-226 (255)
119 PRK10584 putative ABC transpor 100.0 4.7E-42 1E-46 322.2 22.9 206 178-404 6-219 (228)
120 COG0411 LivG ABC-type branched 100.0 8.5E-43 1.8E-47 320.9 17.5 197 200-404 13-223 (250)
121 PRK11614 livF leucine/isoleuci 100.0 2.2E-42 4.7E-47 326.4 20.7 201 178-404 5-210 (237)
122 PRK13636 cbiO cobalt transport 100.0 4.2E-42 9.1E-47 333.1 23.2 204 178-404 5-215 (283)
123 TIGR02857 CydD thiol reductant 100.0 2E-42 4.4E-47 362.5 22.6 200 178-404 320-529 (529)
124 TIGR03411 urea_trans_UrtD urea 100.0 4.7E-42 1E-46 325.0 22.9 203 179-403 3-214 (242)
125 PRK10070 glycine betaine trans 100.0 3.9E-42 8.4E-47 346.4 23.4 214 179-403 5-237 (400)
126 PRK11231 fecE iron-dicitrate t 100.0 4.1E-42 8.8E-47 328.2 22.2 204 179-403 3-210 (255)
127 PRK14273 phosphate ABC transpo 100.0 5.5E-42 1.2E-46 327.0 23.1 203 178-403 7-221 (254)
128 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.2E-42 6.9E-47 319.6 20.9 199 180-404 2-202 (211)
129 PRK14267 phosphate ABC transpo 100.0 5.4E-42 1.2E-46 326.8 23.0 205 178-403 4-220 (253)
130 PRK10575 iron-hydroxamate tran 100.0 5E-42 1.1E-46 329.4 22.7 205 178-403 11-220 (265)
131 PRK09984 phosphonate/organopho 100.0 4.2E-42 9.2E-47 329.3 22.0 208 178-404 4-226 (262)
132 COG1137 YhbG ABC-type (unclass 100.0 1.6E-43 3.4E-48 315.6 10.9 195 200-403 13-211 (243)
133 PRK14241 phosphate transporter 100.0 7.8E-42 1.7E-46 326.8 23.4 204 178-403 4-219 (258)
134 PRK13644 cbiO cobalt transport 100.0 4.7E-42 1E-46 331.3 22.0 202 179-404 2-208 (274)
135 PRK13638 cbiO cobalt transport 100.0 4.7E-42 1E-46 330.6 21.9 201 179-403 2-208 (271)
136 TIGR03873 F420-0_ABC_ATP propo 100.0 6.3E-42 1.4E-46 327.0 22.6 204 179-403 2-209 (256)
137 TIGR03740 galliderm_ABC gallid 100.0 5.2E-42 1.1E-46 320.9 21.3 195 180-403 2-196 (223)
138 PTZ00265 multidrug resistance 100.0 1.5E-42 3.3E-47 396.2 21.3 212 177-404 1164-1431(1466)
139 PRK13649 cbiO cobalt transport 100.0 7.3E-42 1.6E-46 330.8 22.8 206 179-403 3-217 (280)
140 PRK13538 cytochrome c biogenes 100.0 9.2E-42 2E-46 315.2 22.3 187 179-391 2-190 (204)
141 cd03267 ABC_NatA_like Similar 100.0 6.8E-42 1.5E-46 323.1 21.7 193 200-403 30-226 (236)
142 PRK14242 phosphate transporter 100.0 1.3E-41 2.8E-46 324.2 23.7 207 178-403 6-220 (253)
143 PRK14245 phosphate ABC transpo 100.0 1.4E-41 3E-46 323.5 23.9 207 178-403 3-217 (250)
144 PRK10744 pstB phosphate transp 100.0 1.2E-41 2.5E-46 326.0 23.4 205 176-403 11-227 (260)
145 TIGR03410 urea_trans_UrtE urea 100.0 5.3E-42 1.1E-46 322.2 20.5 198 180-404 2-205 (230)
146 PRK10253 iron-enterobactin tra 100.0 8.7E-42 1.9E-46 327.8 22.5 206 177-403 6-216 (265)
147 PRK13652 cbiO cobalt transport 100.0 1.1E-41 2.3E-46 329.3 23.1 203 179-404 4-211 (277)
148 TIGR00958 3a01208 Conjugate Tr 100.0 2.8E-42 6.1E-47 372.8 21.3 200 177-404 477-686 (711)
149 PRK13539 cytochrome c biogenes 100.0 8.8E-42 1.9E-46 316.1 21.6 195 179-403 3-197 (207)
150 PRK13635 cbiO cobalt transport 100.0 7.4E-42 1.6E-46 330.7 22.0 204 178-404 5-213 (279)
151 PRK13549 xylose transporter AT 100.0 6.6E-42 1.4E-46 356.9 23.1 208 178-404 5-216 (506)
152 COG4525 TauB ABC-type taurine 100.0 2.2E-42 4.8E-47 307.1 16.4 187 204-403 18-205 (259)
153 PRK13639 cbiO cobalt transport 100.0 1.3E-41 2.7E-46 328.4 23.1 203 179-404 2-210 (275)
154 PRK14256 phosphate ABC transpo 100.0 1.9E-41 4.2E-46 322.8 23.7 208 178-403 4-219 (252)
155 TIGR02769 nickel_nikE nickel i 100.0 1.5E-41 3.2E-46 326.2 22.9 211 179-403 3-223 (265)
156 PRK14237 phosphate transporter 100.0 2.4E-41 5.3E-46 325.1 24.5 212 173-403 15-234 (267)
157 TIGR01166 cbiO cobalt transpor 100.0 1.1E-41 2.3E-46 311.1 20.9 179 203-391 4-188 (190)
158 TIGR02203 MsbA_lipidA lipid A 100.0 5.6E-42 1.2E-46 362.2 21.8 201 178-404 330-540 (571)
159 cd03233 ABC_PDR_domain1 The pl 100.0 1.3E-41 2.9E-46 313.8 21.7 186 178-403 3-192 (202)
160 PRK14235 phosphate transporter 100.0 2.4E-41 5.1E-46 325.2 24.0 204 178-403 19-234 (267)
161 TIGR01189 ccmA heme ABC export 100.0 1.6E-41 3.5E-46 312.1 21.9 193 180-402 2-196 (198)
162 PRK14259 phosphate ABC transpo 100.0 1.8E-41 3.9E-46 326.3 23.1 203 177-404 12-226 (269)
163 PRK13632 cbiO cobalt transport 100.0 1.5E-41 3.2E-46 327.3 22.5 203 178-403 7-214 (271)
164 COG4988 CydD ABC-type transpor 100.0 4.3E-42 9.3E-47 349.1 19.6 200 176-403 318-526 (559)
165 TIGR03415 ABC_choXWV_ATP choli 100.0 1.4E-41 3.1E-46 340.1 22.9 194 199-403 32-237 (382)
166 TIGR01842 type_I_sec_PrtD type 100.0 1E-41 2.2E-46 358.5 22.9 207 178-403 316-525 (544)
167 KOG0056 Heavy metal exporter H 100.0 2.8E-43 6.1E-48 347.4 10.4 212 171-403 530-744 (790)
168 TIGR01277 thiQ thiamine ABC tr 100.0 1.4E-41 3E-46 315.9 21.1 198 180-403 2-201 (213)
169 TIGR02982 heterocyst_DevA ABC 100.0 2.1E-41 4.5E-46 316.3 22.3 206 179-404 2-214 (220)
170 PRK14250 phosphate ABC transpo 100.0 1.5E-41 3.2E-46 321.8 21.5 198 178-404 3-205 (241)
171 PRK11160 cysteine/glutathione 100.0 7.8E-42 1.7E-46 361.3 21.7 201 177-404 337-546 (574)
172 PRK13657 cyclic beta-1,2-gluca 100.0 1.4E-41 3E-46 360.5 23.7 206 178-404 334-542 (588)
173 PRK13645 cbiO cobalt transport 100.0 1.9E-41 4E-46 329.5 22.3 207 178-403 6-223 (289)
174 PRK14269 phosphate ABC transpo 100.0 2.2E-41 4.8E-46 321.4 22.4 207 179-403 3-213 (246)
175 PRK11022 dppD dipeptide transp 100.0 3.7E-41 7.9E-46 332.4 24.2 213 178-404 3-227 (326)
176 COG4181 Predicted ABC-type tra 100.0 9.9E-42 2.2E-46 297.2 17.6 205 178-403 6-218 (228)
177 cd03300 ABC_PotA_N PotA is an 100.0 3.3E-41 7.1E-46 317.6 22.5 200 180-403 2-203 (232)
178 PRK13540 cytochrome c biogenes 100.0 4.6E-41 1E-45 309.6 23.0 193 179-401 2-196 (200)
179 PRK13547 hmuV hemin importer A 100.0 2.5E-41 5.3E-46 325.8 21.9 206 179-403 2-227 (272)
180 PRK10247 putative ABC transpor 100.0 4.1E-41 8.9E-46 315.5 22.8 199 178-404 7-210 (225)
181 PRK09473 oppD oligopeptide tra 100.0 4.2E-41 9E-46 332.4 24.0 213 178-404 12-235 (330)
182 cd03232 ABC_PDR_domain2 The pl 100.0 3.1E-41 6.7E-46 308.9 21.5 179 178-403 3-181 (192)
183 TIGR02324 CP_lyasePhnL phospho 100.0 5.3E-41 1.1E-45 314.2 23.5 209 179-404 2-222 (224)
184 TIGR00956 3a01205 Pleiotropic 100.0 2.4E-41 5.2E-46 385.7 25.5 203 202-404 72-284 (1394)
185 PRK14240 phosphate transporter 100.0 4E-41 8.7E-46 320.2 22.9 203 178-403 3-217 (250)
186 PRK11308 dppF dipeptide transp 100.0 4.6E-41 1E-45 331.7 24.0 214 178-404 5-228 (327)
187 PRK14239 phosphate transporter 100.0 4.8E-41 1E-45 319.9 23.1 204 178-404 5-220 (252)
188 TIGR01846 type_I_sec_HlyB type 100.0 1.7E-41 3.7E-46 366.2 22.4 208 177-404 454-664 (694)
189 TIGR00968 3a0106s01 sulfate AB 100.0 3.9E-41 8.5E-46 318.1 22.1 200 180-403 2-203 (237)
190 PRK10762 D-ribose transporter 100.0 2.7E-41 5.7E-46 351.9 23.0 205 179-404 5-214 (501)
191 cd03297 ABC_ModC_molybdenum_tr 100.0 2.6E-41 5.6E-46 314.3 20.4 186 202-403 11-204 (214)
192 PRK13640 cbiO cobalt transport 100.0 3.8E-41 8.3E-46 326.2 22.3 206 178-404 5-216 (282)
193 PRK13633 cobalt transporter AT 100.0 4.3E-41 9.4E-46 325.5 22.1 208 178-404 4-217 (280)
194 PRK14270 phosphate ABC transpo 100.0 6.8E-41 1.5E-45 318.9 23.1 204 178-404 4-219 (251)
195 PRK13648 cbiO cobalt transport 100.0 7E-41 1.5E-45 322.2 23.4 203 178-403 7-214 (269)
196 PRK14253 phosphate ABC transpo 100.0 6.7E-41 1.5E-45 318.5 23.0 208 178-404 3-217 (249)
197 PRK14262 phosphate ABC transpo 100.0 6.7E-41 1.5E-45 318.7 22.9 206 179-403 4-217 (250)
198 TIGR01184 ntrCD nitrate transp 100.0 2.9E-41 6.2E-46 317.7 20.0 186 207-403 1-187 (230)
199 PRK10771 thiQ thiamine transpo 100.0 4.3E-41 9.2E-46 316.7 21.1 199 179-403 2-202 (232)
200 cd03213 ABCG_EPDR ABCG transpo 100.0 6.1E-41 1.3E-45 307.5 21.6 180 178-403 3-184 (194)
201 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.6E-41 9.9E-46 315.1 21.1 189 195-403 26-214 (224)
202 PRK15093 antimicrobial peptide 100.0 7.3E-41 1.6E-45 331.0 23.7 214 179-404 4-232 (330)
203 PRK11144 modC molybdate transp 100.0 4.7E-41 1E-45 335.0 22.5 178 209-403 16-201 (352)
204 PRK15112 antimicrobial peptide 100.0 5.2E-41 1.1E-45 322.8 22.0 212 179-404 5-223 (267)
205 PRK14274 phosphate ABC transpo 100.0 8.7E-41 1.9E-45 319.7 23.4 203 178-403 12-226 (259)
206 PRK14260 phosphate ABC transpo 100.0 7.3E-41 1.6E-45 320.3 22.8 203 178-403 7-221 (259)
207 PRK14272 phosphate ABC transpo 100.0 1.1E-40 2.3E-45 317.6 23.6 204 178-403 4-219 (252)
208 TIGR02142 modC_ABC molybdenum 100.0 3.6E-41 7.7E-46 336.2 21.3 182 209-403 15-204 (354)
209 PRK14244 phosphate ABC transpo 100.0 8.9E-41 1.9E-45 318.1 22.6 207 179-403 6-220 (251)
210 COG0410 LivF ABC-type branched 100.0 3.4E-41 7.4E-46 308.0 18.8 200 179-403 4-209 (237)
211 PRK09700 D-allose transporter 100.0 5.3E-41 1.1E-45 350.4 22.7 205 178-403 5-217 (510)
212 cd03299 ABC_ModC_like Archeal 100.0 9.6E-41 2.1E-45 315.0 22.2 187 206-403 14-202 (235)
213 PRK14249 phosphate ABC transpo 100.0 1.3E-40 2.7E-45 317.1 23.2 208 178-404 4-219 (251)
214 TIGR02633 xylG D-xylose ABC tr 100.0 7.9E-41 1.7E-45 348.3 23.6 207 179-404 2-214 (500)
215 cd03230 ABC_DR_subfamily_A Thi 100.0 7.2E-41 1.6E-45 301.5 20.2 165 180-404 2-168 (173)
216 COG4987 CydC ABC-type transpor 100.0 1.5E-41 3.2E-46 340.6 17.2 199 178-403 336-544 (573)
217 PRK13642 cbiO cobalt transport 100.0 9.7E-41 2.1E-45 322.5 22.3 205 178-404 4-213 (277)
218 PRK14236 phosphate transporter 100.0 1.9E-40 4.1E-45 319.7 24.3 209 177-404 24-240 (272)
219 PRK11288 araG L-arabinose tran 100.0 9.5E-41 2E-45 347.8 23.6 205 178-403 4-212 (501)
220 PRK14261 phosphate ABC transpo 100.0 1.6E-40 3.5E-45 316.7 22.9 207 178-403 6-220 (253)
221 COG4152 ABC-type uncharacteriz 100.0 3.2E-41 6.9E-46 309.0 17.2 201 179-404 3-203 (300)
222 PRK14258 phosphate ABC transpo 100.0 2E-40 4.3E-45 317.7 23.6 209 178-404 7-224 (261)
223 PRK14271 phosphate ABC transpo 100.0 2.3E-40 4.9E-45 319.8 23.8 208 178-404 21-235 (276)
224 PRK14251 phosphate ABC transpo 100.0 1.7E-40 3.7E-45 316.0 22.6 203 178-403 4-218 (251)
225 PRK15056 manganese/iron transp 100.0 1.3E-40 2.8E-45 320.8 22.0 206 178-403 6-214 (272)
226 PRK11701 phnK phosphonate C-P 100.0 1.9E-40 4.2E-45 317.1 22.9 203 178-403 6-224 (258)
227 PRK10789 putative multidrug tr 100.0 6.8E-41 1.5E-45 353.9 21.7 200 178-404 313-522 (569)
228 cd03252 ABCC_Hemolysin The ABC 100.0 3.6E-41 7.7E-46 318.0 17.3 203 179-403 1-208 (237)
229 PRK10418 nikD nickel transport 100.0 2.3E-40 5E-45 315.9 22.9 201 178-403 4-213 (254)
230 PRK14257 phosphate ABC transpo 100.0 2.9E-40 6.3E-45 326.1 24.1 210 177-404 79-297 (329)
231 PRK14254 phosphate ABC transpo 100.0 3.9E-40 8.4E-45 319.6 24.4 200 178-402 39-250 (285)
232 cd03229 ABC_Class3 This class 100.0 1.1E-40 2.3E-45 301.8 19.1 166 180-403 2-173 (178)
233 TIGR02204 MsbA_rel ABC transpo 100.0 1.1E-40 2.4E-45 352.7 22.4 200 178-403 337-546 (576)
234 PLN03140 ABC transporter G fam 100.0 7.1E-41 1.5E-45 381.3 22.3 202 203-404 177-411 (1470)
235 PRK14248 phosphate ABC transpo 100.0 2.6E-40 5.7E-45 318.0 22.8 203 178-403 21-235 (268)
236 PRK15439 autoinducer 2 ABC tra 100.0 1.7E-40 3.6E-45 346.6 23.0 198 178-403 11-212 (510)
237 PRK14255 phosphate ABC transpo 100.0 4.6E-40 9.9E-45 313.3 24.0 203 178-403 5-219 (252)
238 TIGR01257 rim_protein retinal- 100.0 2.7E-39 5.9E-44 371.5 35.0 204 177-403 927-1132(2272)
239 TIGR01192 chvA glucan exporter 100.0 1.6E-40 3.5E-45 352.0 23.1 200 178-403 334-541 (585)
240 PRK14265 phosphate ABC transpo 100.0 3.8E-40 8.3E-45 317.9 23.7 204 176-404 18-233 (274)
241 PRK14263 phosphate ABC transpo 100.0 4.2E-40 9E-45 315.5 23.6 207 177-404 7-221 (261)
242 PRK14275 phosphate ABC transpo 100.0 3.2E-40 7E-45 320.3 23.0 203 178-403 39-253 (286)
243 PRK14243 phosphate transporter 100.0 3.2E-40 7E-45 316.8 22.7 205 178-403 10-222 (264)
244 cd03251 ABCC_MsbA MsbA is an e 100.0 7.8E-41 1.7E-45 315.0 17.3 203 180-404 2-209 (234)
245 PRK10982 galactose/methyl gala 100.0 1.9E-40 4E-45 344.8 21.8 194 203-404 10-207 (491)
246 TIGR02770 nickel_nikD nickel i 100.0 2E-40 4.3E-45 311.8 19.7 189 206-403 1-198 (230)
247 cd03248 ABCC_TAP TAP, the Tran 100.0 1.4E-40 3E-45 311.8 18.6 206 178-404 11-221 (226)
248 PRK14238 phosphate transporter 100.0 5.9E-40 1.3E-44 316.1 23.3 203 178-403 24-238 (271)
249 cd03245 ABCC_bacteriocin_expor 100.0 1.8E-40 3.9E-45 309.7 18.5 200 179-404 3-211 (220)
250 PRK10419 nikE nickel transport 100.0 6.8E-40 1.5E-44 315.2 23.0 211 179-403 4-224 (268)
251 cd03215 ABC_Carb_Monos_II This 100.0 3.7E-40 8E-45 299.3 19.9 166 179-404 5-177 (182)
252 CHL00131 ycf16 sulfate ABC tra 100.0 1.2E-39 2.7E-44 310.3 24.3 208 178-403 7-224 (252)
253 COG0444 DppD ABC-type dipeptid 100.0 4.4E-40 9.5E-45 314.8 20.8 213 179-404 2-227 (316)
254 TIGR02323 CP_lyasePhnK phospho 100.0 7.5E-40 1.6E-44 312.0 22.2 203 178-403 3-221 (253)
255 PRK13541 cytochrome c biogenes 100.0 1E-39 2.2E-44 299.5 21.9 192 179-402 2-193 (195)
256 cd03254 ABCC_Glucan_exporter_l 100.0 1.7E-40 3.7E-45 311.7 17.1 198 178-403 2-209 (229)
257 PRK14266 phosphate ABC transpo 100.0 1.3E-39 2.8E-44 309.9 22.6 207 178-403 3-217 (250)
258 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2E-40 4.3E-45 313.1 16.8 203 180-403 2-209 (238)
259 PRK14252 phosphate ABC transpo 100.0 1.9E-39 4.2E-44 311.5 23.9 205 176-403 14-232 (265)
260 COG1129 MglA ABC-type sugar tr 100.0 4.1E-40 8.9E-45 333.6 20.0 206 178-404 8-218 (500)
261 PRK14246 phosphate ABC transpo 100.0 1.7E-39 3.6E-44 310.7 23.0 204 178-403 10-224 (257)
262 PRK09580 sufC cysteine desulfu 100.0 1.6E-39 3.4E-44 308.7 22.4 207 179-403 2-218 (248)
263 PRK09544 znuC high-affinity zi 100.0 1.1E-39 2.4E-44 310.9 21.1 188 178-404 4-194 (251)
264 TIGR01257 rim_protein retinal- 100.0 2.6E-39 5.7E-44 371.6 28.1 204 178-403 1937-2142(2272)
265 COG4618 ArpD ABC-type protease 100.0 4.7E-40 1E-44 327.3 18.9 218 168-404 324-544 (580)
266 PRK14264 phosphate ABC transpo 100.0 4E-39 8.7E-44 315.3 25.2 208 178-402 45-270 (305)
267 cd03246 ABCC_Protease_Secretio 100.0 7.2E-40 1.6E-44 295.0 18.2 163 180-403 2-167 (173)
268 TIGR03269 met_CoM_red_A2 methy 100.0 1.4E-39 3E-44 340.5 23.0 201 180-404 2-242 (520)
269 PRK03695 vitamin B12-transport 100.0 1.2E-39 2.6E-44 310.1 20.2 185 206-403 11-205 (248)
270 cd03253 ABCC_ATM1_transporter 100.0 5.1E-40 1.1E-44 309.8 17.2 198 180-403 2-207 (236)
271 COG4175 ProV ABC-type proline/ 100.0 4.7E-40 1E-44 311.1 16.7 188 204-402 41-236 (386)
272 PRK09700 D-allose transporter 100.0 9.8E-40 2.1E-44 340.9 20.5 204 178-404 265-482 (510)
273 PLN03130 ABC transporter C fam 100.0 2.2E-39 4.8E-44 373.3 23.9 207 177-404 1236-1445(1622)
274 PRK10261 glutathione transport 100.0 3.4E-39 7.4E-44 343.8 23.6 215 178-404 313-537 (623)
275 COG4559 ABC-type hemin transpo 100.0 2E-39 4.3E-44 291.8 18.2 204 179-404 2-214 (259)
276 PRK10261 glutathione transport 100.0 4.7E-39 1E-43 342.8 23.8 208 178-404 12-242 (623)
277 COG1123 ATPase components of v 100.0 3.2E-39 7E-44 329.1 21.2 215 178-404 280-503 (539)
278 PRK15134 microcin C ABC transp 100.0 5E-39 1.1E-43 336.9 23.0 210 178-404 5-230 (529)
279 PRK13549 xylose transporter AT 100.0 3E-39 6.4E-44 336.9 21.0 209 178-403 259-477 (506)
280 TIGR02633 xylG D-xylose ABC tr 100.0 2.7E-39 5.9E-44 336.8 20.5 209 178-403 257-475 (500)
281 TIGR03269 met_CoM_red_A2 methy 100.0 7.1E-39 1.5E-43 335.2 23.2 206 178-403 279-500 (520)
282 cd03244 ABCC_MRP_domain2 Domai 100.0 2.5E-39 5.4E-44 302.2 17.6 198 178-403 2-209 (221)
283 PRK13546 teichoic acids export 100.0 1.8E-38 4E-43 304.5 23.7 207 176-403 2-215 (264)
284 cd03247 ABCC_cytochrome_bd The 100.0 3.7E-39 7.9E-44 291.7 17.6 166 179-403 1-168 (178)
285 PRK15134 microcin C ABC transp 100.0 5.5E-39 1.2E-43 336.7 21.4 215 178-404 275-499 (529)
286 PLN03232 ABC transporter C fam 100.0 3.3E-39 7.1E-44 371.2 21.2 200 177-404 1233-1442(1495)
287 COG3845 ABC-type uncharacteriz 100.0 4.5E-39 9.8E-44 320.4 19.2 205 178-403 4-212 (501)
288 PRK13545 tagH teichoic acids e 100.0 1.3E-38 2.8E-43 325.9 23.0 179 204-403 37-215 (549)
289 cd03214 ABC_Iron-Siderophores_ 100.0 3.1E-39 6.7E-44 292.7 15.9 155 204-403 12-170 (180)
290 cd03217 ABC_FeS_Assembly ABC-t 100.0 8.5E-39 1.8E-43 294.7 19.0 171 180-403 2-177 (200)
291 COG4619 ABC-type uncharacteriz 100.0 1.1E-39 2.3E-44 283.6 12.0 196 193-402 5-205 (223)
292 cd03289 ABCC_CFTR2 The CFTR su 100.0 5.9E-39 1.3E-43 309.3 18.5 198 178-404 2-209 (275)
293 PRK10938 putative molybdenum t 100.0 5.5E-39 1.2E-43 333.7 19.5 194 179-404 4-208 (490)
294 cd03290 ABCC_SUR1_N The SUR do 100.0 1.1E-38 2.3E-43 297.5 19.5 185 204-404 14-214 (218)
295 cd03250 ABCC_MRP_domain1 Domai 100.0 6.8E-39 1.5E-43 295.9 17.5 188 179-403 1-199 (204)
296 PRK11288 araG L-arabinose tran 100.0 8.4E-39 1.8E-43 333.2 20.3 192 205-404 267-469 (501)
297 cd03223 ABCD_peroxisomal_ALDP 100.0 2E-38 4.3E-43 283.9 19.6 159 180-404 2-160 (166)
298 cd03228 ABCC_MRP_Like The MRP 100.0 9.8E-39 2.1E-43 287.1 17.6 163 180-404 2-167 (171)
299 COG4598 HisP ABC-type histidin 100.0 2.7E-39 5.9E-44 284.0 13.4 183 200-391 15-213 (256)
300 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.4E-38 7.4E-43 332.4 23.9 203 177-404 336-543 (555)
301 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.6E-38 5.7E-43 292.6 20.2 187 178-403 6-195 (207)
302 TIGR03771 anch_rpt_ABC anchore 100.0 2.1E-38 4.6E-43 296.8 19.4 182 212-403 1-185 (223)
303 TIGR00957 MRP_assoc_pro multi 100.0 1.3E-38 2.8E-43 366.7 21.9 200 177-404 1283-1492(1522)
304 COG1123 ATPase components of v 100.0 3.4E-38 7.3E-43 321.7 22.3 212 178-404 5-228 (539)
305 PRK10762 D-ribose transporter 100.0 2.1E-38 4.5E-43 330.2 21.3 190 206-403 267-467 (501)
306 cd03216 ABC_Carb_Monos_I This 100.0 2.6E-38 5.5E-43 282.4 18.6 150 179-403 1-154 (163)
307 PTZ00265 multidrug resistance 100.0 1.6E-38 3.5E-43 363.3 21.6 211 178-404 382-652 (1466)
308 cd03288 ABCC_SUR2 The SUR doma 100.0 2.3E-38 4.9E-43 302.8 18.6 204 177-403 18-226 (257)
309 PRK10522 multidrug transporter 100.0 2.9E-38 6.4E-43 332.4 20.8 196 178-403 322-521 (547)
310 PTZ00243 ABC transporter; Prov 100.0 3.8E-38 8.2E-43 362.5 22.8 200 177-404 1307-1517(1560)
311 cd03237 ABC_RNaseL_inhibitor_d 100.0 8.3E-38 1.8E-42 297.0 19.5 175 206-404 9-189 (246)
312 COG5265 ATM1 ABC-type transpor 100.0 8.6E-39 1.9E-43 312.1 12.7 209 174-403 258-469 (497)
313 COG4161 ArtP ABC-type arginine 100.0 8.5E-38 1.8E-42 270.3 15.8 192 178-391 2-202 (242)
314 PRK15439 autoinducer 2 ABC tra 100.0 1.3E-37 2.8E-42 324.9 20.0 191 206-404 278-476 (510)
315 COG1119 ModF ABC-type molybden 100.0 9E-38 2E-42 287.7 16.6 209 175-404 28-246 (257)
316 PRK10982 galactose/methyl gala 100.0 2.1E-37 4.7E-42 321.9 19.9 203 178-403 250-463 (491)
317 PRK10938 putative molybdenum t 100.0 2.7E-37 5.8E-42 321.1 20.5 206 178-403 260-475 (490)
318 COG4604 CeuD ABC-type enteroch 100.0 2.7E-38 5.9E-43 281.5 10.9 195 200-403 10-208 (252)
319 PRK15064 ABC transporter ATP-b 100.0 6.8E-37 1.5E-41 320.9 21.6 193 179-403 2-224 (530)
320 TIGR01187 potA spermidine/putr 100.0 4.5E-37 9.8E-42 303.3 18.4 172 222-404 1-174 (325)
321 PRK11819 putative ABC transpor 100.0 1.6E-36 3.4E-41 319.7 21.8 194 178-403 6-232 (556)
322 PRK10535 macrolide transporter 100.0 3.9E-36 8.5E-41 321.5 24.5 205 178-403 4-215 (648)
323 PRK13409 putative ATPase RIL; 100.0 1.7E-36 3.8E-41 320.0 21.4 187 178-404 340-527 (590)
324 TIGR01271 CFTR_protein cystic 100.0 6.4E-37 1.4E-41 351.9 18.9 199 177-404 1216-1424(1490)
325 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.5E-36 7.5E-41 291.1 20.9 186 176-403 37-230 (282)
326 COG4148 ModC ABC-type molybdat 100.0 3E-37 6.5E-42 287.6 11.8 180 208-404 15-202 (352)
327 PRK15064 ABC transporter ATP-b 100.0 3.3E-36 7.1E-41 315.8 20.8 186 178-403 319-507 (530)
328 TIGR00954 3a01203 Peroxysomal 100.0 2.8E-36 6.1E-41 323.1 20.1 195 178-404 451-651 (659)
329 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5E-36 1.1E-40 315.7 21.4 194 178-403 4-230 (552)
330 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.3E-36 7.2E-41 287.4 17.7 182 205-404 15-212 (255)
331 PRK11819 putative ABC transpor 100.0 7.4E-36 1.6E-40 314.6 21.5 189 178-403 324-514 (556)
332 PLN03232 ABC transporter C fam 100.0 4.4E-36 9.5E-41 345.4 21.5 191 178-404 614-812 (1495)
333 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1E-35 2.3E-40 313.3 21.5 189 178-403 322-512 (552)
334 COG4133 CcmA ABC-type transpor 100.0 7.7E-36 1.7E-40 264.3 17.0 186 193-391 4-191 (209)
335 PRK15177 Vi polysaccharide exp 100.0 6.6E-36 1.4E-40 278.2 17.1 173 206-403 2-175 (213)
336 PLN03130 ABC transporter C fam 100.0 9.4E-36 2E-40 343.4 21.6 189 178-403 614-811 (1622)
337 COG4172 ABC-type uncharacteriz 100.0 2.7E-35 5.9E-40 286.1 21.1 219 175-404 273-500 (534)
338 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.7E-35 3.7E-40 258.9 17.8 138 180-403 2-139 (144)
339 COG0396 sufC Cysteine desulfur 100.0 4.5E-35 9.7E-40 267.1 21.0 206 178-401 3-215 (251)
340 COG4608 AppF ABC-type oligopep 100.0 2E-35 4.2E-40 277.3 17.5 176 178-403 4-182 (268)
341 cd03222 ABC_RNaseL_inhibitor T 100.0 3.1E-35 6.7E-40 265.5 16.3 133 202-403 11-144 (177)
342 COG4136 ABC-type uncharacteriz 100.0 2.1E-35 4.5E-40 252.6 14.1 181 202-391 13-196 (213)
343 PRK11147 ABC transporter ATPas 100.0 6.3E-35 1.4E-39 311.9 21.1 190 178-404 319-510 (635)
344 cd03238 ABC_UvrA The excision 100.0 6.8E-35 1.5E-39 263.0 17.2 152 203-404 7-161 (176)
345 PRK10636 putative ABC transpor 100.0 1.8E-34 4E-39 308.0 20.9 186 178-404 312-500 (638)
346 PRK10636 putative ABC transpor 100.0 3.2E-34 6.9E-39 306.2 21.5 192 179-403 2-218 (638)
347 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.4E-34 7.4E-39 253.8 18.1 139 204-404 12-153 (157)
348 COG4586 ABC-type uncharacteriz 100.0 6.4E-35 1.4E-39 271.5 13.7 190 204-404 37-230 (325)
349 TIGR00957 MRP_assoc_pro multi 100.0 5.7E-34 1.2E-38 328.4 23.0 193 178-404 636-834 (1522)
350 COG4674 Uncharacterized ABC-ty 100.0 8.2E-35 1.8E-39 258.8 12.2 202 178-401 5-216 (249)
351 PRK13409 putative ATPase RIL; 100.0 1.8E-34 3.8E-39 304.8 16.6 178 204-403 87-283 (590)
352 PRK11147 ABC transporter ATPas 100.0 2.1E-33 4.6E-38 300.1 22.3 192 178-403 3-225 (635)
353 PLN03073 ABC transporter F fam 100.0 2.1E-33 4.5E-38 301.9 21.6 190 177-404 507-697 (718)
354 COG4172 ABC-type uncharacteriz 100.0 2.2E-33 4.7E-38 272.9 19.4 211 179-403 7-230 (534)
355 COG1101 PhnK ABC-type uncharac 100.0 5.5E-34 1.2E-38 257.2 13.4 193 203-403 18-221 (263)
356 TIGR01271 CFTR_protein cystic 100.0 5.9E-33 1.3E-37 319.3 24.8 180 204-403 439-619 (1490)
357 KOG0059 Lipid exporter ABCA1 a 100.0 7.9E-33 1.7E-37 304.3 22.8 202 178-402 564-769 (885)
358 COG1134 TagH ABC-type polysacc 100.0 6.7E-32 1.5E-36 249.1 19.5 207 178-404 3-220 (249)
359 COG0488 Uup ATPase components 100.0 5.8E-32 1.2E-36 280.0 19.3 192 178-402 3-221 (530)
360 PF00005 ABC_tran: ABC transpo 100.0 1.9E-32 4.1E-37 236.4 12.3 134 207-359 1-137 (137)
361 KOG0054 Multidrug resistance-a 100.0 1.4E-31 3E-36 296.9 21.5 208 176-404 1136-1346(1381)
362 PTZ00243 ABC transporter; Prov 100.0 1.7E-31 3.7E-36 307.7 19.1 183 202-403 671-853 (1560)
363 KOG0065 Pleiotropic drug resis 100.0 3.5E-32 7.6E-37 295.8 12.2 202 203-404 127-335 (1391)
364 COG4778 PhnL ABC-type phosphon 100.0 1.8E-31 3.9E-36 232.7 12.8 208 179-402 5-223 (235)
365 KOG0054 Multidrug resistance-a 100.0 1.1E-30 2.4E-35 289.8 22.2 192 177-404 517-715 (1381)
366 PLN03073 ABC transporter F fam 100.0 1.3E-31 2.8E-36 288.1 14.3 204 177-403 176-413 (718)
367 COG4167 SapF ABC-type antimicr 100.0 1.2E-30 2.7E-35 230.0 16.0 212 179-404 5-223 (267)
368 COG4107 PhnK ABC-type phosphon 100.0 7.2E-31 1.6E-35 229.8 14.4 198 179-403 7-224 (258)
369 cd03270 ABC_UvrA_I The excisio 100.0 2.2E-30 4.8E-35 243.2 18.2 182 203-404 7-211 (226)
370 cd03278 ABC_SMC_barmotin Barmo 100.0 9.7E-31 2.1E-35 240.5 12.6 163 208-403 14-187 (197)
371 cd03271 ABC_UvrA_II The excisi 100.0 5.9E-29 1.3E-33 237.4 17.4 184 204-403 8-243 (261)
372 COG0488 Uup ATPase components 100.0 1.5E-28 3.2E-33 254.6 18.5 188 176-403 319-508 (530)
373 cd03272 ABC_SMC3_euk Eukaryoti 100.0 5.8E-29 1.3E-33 235.5 12.7 184 202-403 13-232 (243)
374 COG1129 MglA ABC-type sugar tr 100.0 9E-28 2E-32 243.8 19.3 191 206-404 274-474 (500)
375 cd03273 ABC_SMC2_euk Eukaryoti 100.0 2.2E-28 4.7E-33 233.1 10.9 177 217-403 25-240 (251)
376 cd03274 ABC_SMC4_euk Eukaryoti 100.0 2.3E-29 4.9E-34 234.0 2.8 176 202-403 15-201 (212)
377 COG4178 ABC-type uncharacteriz 99.9 3.2E-27 6.9E-32 244.1 17.1 188 177-395 391-579 (604)
378 cd03240 ABC_Rad50 The catalyti 99.9 2.9E-27 6.2E-32 218.7 11.5 162 210-403 16-194 (204)
379 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.6E-26 3.5E-31 215.0 14.0 175 208-403 18-205 (213)
380 COG4138 BtuD ABC-type cobalami 99.9 3.1E-27 6.8E-32 207.2 6.9 180 207-403 15-204 (248)
381 COG4615 PvdE ABC-type sideroph 99.9 1.9E-26 4.2E-31 223.9 11.0 195 178-403 322-520 (546)
382 PRK00635 excinuclease ABC subu 99.9 7.6E-25 1.7E-29 249.2 20.3 122 275-404 759-884 (1809)
383 COG1245 Predicted ATPase, RNas 99.9 4.3E-24 9.3E-29 210.8 15.2 172 207-404 357-529 (591)
384 KOG0927 Predicted transporter 99.9 1.2E-24 2.5E-29 218.8 11.1 189 177-404 388-579 (614)
385 COG3845 ABC-type uncharacteriz 99.9 1.9E-23 4.1E-28 208.9 19.5 209 176-404 255-476 (501)
386 cd03276 ABC_SMC6_euk Eukaryoti 99.9 5.6E-24 1.2E-28 195.8 14.2 164 206-403 11-187 (198)
387 PRK00349 uvrA excinuclease ABC 99.9 2.7E-23 5.9E-28 227.6 19.9 109 279-403 792-904 (943)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.7E-24 5.8E-29 204.5 10.5 179 215-404 21-231 (247)
389 KOG0060 Long-chain acyl-CoA tr 99.9 1.6E-23 3.6E-28 211.9 16.7 196 177-396 432-633 (659)
390 KOG0927 Predicted transporter 99.9 5.8E-23 1.3E-27 206.6 14.1 202 176-402 73-290 (614)
391 TIGR00630 uvra excinuclease AB 99.9 3.8E-22 8.3E-27 218.2 19.4 110 278-403 789-902 (924)
392 COG4170 SapD ABC-type antimicr 99.9 6.8E-23 1.5E-27 184.7 10.4 198 202-402 18-230 (330)
393 KOG0062 ATPase component of AB 99.9 1.2E-22 2.7E-27 203.2 11.6 176 177-391 79-256 (582)
394 KOG0066 eIF2-interacting prote 99.9 7.2E-22 1.6E-26 194.0 12.8 176 177-391 585-762 (807)
395 KOG2355 Predicted ABC-type tra 99.9 1.4E-20 3E-25 169.3 14.7 182 176-389 11-207 (291)
396 cd03239 ABC_SMC_head The struc 99.8 2E-20 4.4E-25 169.3 14.5 71 331-403 95-169 (178)
397 COG2401 ABC-type ATPase fused 99.8 1.3E-20 2.9E-25 184.4 13.3 167 203-391 395-569 (593)
398 COG1245 Predicted ATPase, RNas 99.8 7.1E-21 1.5E-25 188.2 10.2 157 214-391 97-274 (591)
399 cd03280 ABC_MutS2 MutS2 homolo 99.8 7.6E-21 1.6E-25 175.2 9.4 137 206-403 16-162 (200)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.8 1.8E-20 3.8E-25 174.5 11.6 72 329-401 125-202 (213)
401 KOG0064 Peroxisomal long-chain 99.8 6.3E-21 1.4E-25 191.1 9.1 174 203-392 494-671 (728)
402 cd03283 ABC_MutS-like MutS-lik 99.8 5.6E-21 1.2E-25 176.0 7.9 135 204-391 14-149 (199)
403 KOG0062 ATPase component of AB 99.8 3.6E-20 7.9E-25 185.6 12.0 192 175-403 359-551 (582)
404 cd03241 ABC_RecN RecN ATPase i 99.8 2E-19 4.2E-24 173.9 13.0 71 330-403 170-244 (276)
405 cd03227 ABC_Class2 ABC-type Cl 99.8 4.2E-19 9.1E-24 158.2 12.8 72 330-403 77-152 (162)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.8 3.9E-19 8.5E-24 166.4 9.5 140 204-402 17-163 (222)
407 PRK00635 excinuclease ABC subu 99.8 1.6E-17 3.5E-22 189.9 18.0 110 278-402 1660-1772(1809)
408 cd03282 ABC_MSH4_euk MutS4 hom 99.7 4.3E-18 9.4E-23 157.3 9.7 137 203-391 15-152 (204)
409 COG0178 UvrA Excinuclease ATPa 99.7 3.3E-17 7E-22 171.9 15.4 110 278-402 783-895 (935)
410 TIGR00955 3a01204 The Eye Pigm 99.7 6.7E-18 1.4E-22 180.3 9.3 118 1-120 489-611 (617)
411 cd03243 ABC_MutS_homologs The 99.7 8.7E-18 1.9E-22 155.0 7.5 69 330-401 91-160 (202)
412 KOG0066 eIF2-interacting prote 99.7 1.9E-17 4E-22 163.1 7.5 189 197-402 270-480 (807)
413 cd03242 ABC_RecF RecF is a rec 99.7 2E-16 4.4E-21 152.4 14.5 58 329-390 182-248 (270)
414 KOG0063 RNAse L inhibitor, ABC 99.7 2.7E-16 5.8E-21 154.8 11.9 206 174-404 316-530 (592)
415 PRK00349 uvrA excinuclease ABC 99.7 3E-16 6.5E-21 172.5 11.7 121 276-404 434-563 (943)
416 TIGR00630 uvra excinuclease AB 99.6 6.7E-16 1.4E-20 169.5 12.4 120 277-404 433-561 (924)
417 cd03284 ABC_MutS1 MutS1 homolo 99.6 9.8E-16 2.1E-20 142.9 11.2 139 204-401 18-162 (216)
418 PLN03211 ABC transporter G-25; 99.6 3.2E-15 7E-20 160.4 8.5 116 2-121 536-657 (659)
419 smart00534 MUTSac ATPase domai 99.6 2.9E-15 6.4E-20 136.4 6.9 69 329-400 60-130 (185)
420 TIGR02858 spore_III_AA stage I 99.6 1.3E-14 2.8E-19 139.4 10.4 116 218-392 112-231 (270)
421 PF02463 SMC_N: RecF/RecN/SMC 99.6 4.1E-15 8.8E-20 138.6 6.7 70 330-402 136-209 (220)
422 TIGR01069 mutS2 MutS2 family p 99.5 1.3E-14 2.9E-19 157.5 9.0 135 210-396 314-451 (771)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.5 1E-13 2.2E-18 129.1 13.0 131 206-392 18-156 (213)
424 cd00820 PEPCK_HprK Phosphoenol 99.5 1.6E-14 3.5E-19 119.1 6.3 74 204-288 2-78 (107)
425 PRK00064 recF recombination pr 99.5 5.5E-13 1.2E-17 133.7 16.2 60 329-391 272-340 (361)
426 KOG0063 RNAse L inhibitor, ABC 99.5 1.2E-13 2.7E-18 136.2 8.2 153 215-392 98-275 (592)
427 PTZ00132 GTP-binding nuclear p 99.4 1.2E-13 2.5E-18 128.4 6.4 44 335-378 157-205 (215)
428 cd03287 ABC_MSH3_euk MutS3 hom 99.4 1.1E-12 2.4E-17 122.7 11.9 136 204-392 18-156 (222)
429 cd01128 rho_factor Transcripti 99.4 1.7E-13 3.7E-18 130.2 2.0 177 212-403 11-205 (249)
430 PF13304 AAA_21: AAA domain; P 99.3 3.4E-12 7.3E-17 118.4 7.9 62 330-391 236-300 (303)
431 TIGR00634 recN DNA repair prot 99.3 2.9E-12 6.3E-17 135.6 8.3 72 329-403 439-514 (563)
432 PRK00409 recombination and DNA 99.3 3.8E-12 8.1E-17 138.8 8.5 62 329-391 389-451 (782)
433 cd03286 ABC_MSH6_euk MutS6 hom 99.3 9.1E-12 2E-16 116.2 8.7 137 204-392 17-155 (218)
434 PRK10869 recombination and rep 99.3 7.1E-12 1.5E-16 132.1 8.7 71 330-403 430-504 (553)
435 KOG0061 Transporter, ABC super 99.3 7.8E-12 1.7E-16 133.2 8.2 117 3-121 488-607 (613)
436 PHA02562 46 endonuclease subun 99.3 5.2E-12 1.1E-16 133.7 6.7 71 329-403 467-548 (562)
437 TIGR00618 sbcc exonuclease Sbc 99.2 1.3E-11 2.9E-16 139.3 9.3 75 328-403 948-1032(1042)
438 PRK08533 flagellar accessory p 99.2 8.5E-11 1.8E-15 110.7 12.9 134 213-389 20-162 (230)
439 TIGR00606 rad50 rad50. This fa 99.2 1.8E-11 4E-16 141.0 9.7 112 278-398 1155-1277(1311)
440 PRK14079 recF recombination pr 99.2 1.6E-10 3.5E-15 115.3 14.7 59 330-391 263-330 (349)
441 cd01124 KaiC KaiC is a circadi 99.2 1.3E-10 2.9E-15 105.0 11.1 75 329-403 70-161 (187)
442 cd01120 RecA-like_NTPases RecA 99.2 9.7E-11 2.1E-15 102.3 8.3 63 331-393 68-140 (165)
443 COG3910 Predicted ATPase [Gene 99.2 5.2E-10 1.1E-14 100.1 12.7 62 329-391 128-189 (233)
444 PRK03918 chromosome segregatio 99.1 6.4E-11 1.4E-15 131.8 8.4 74 328-403 786-865 (880)
445 PRK10246 exonuclease subunit S 99.1 9.6E-11 2.1E-15 132.1 9.2 63 328-390 947-1017(1047)
446 PRK01156 chromosome segregatio 99.1 3E-10 6.5E-15 126.7 9.0 74 328-403 799-881 (895)
447 PRK07721 fliI flagellum-specif 99.1 1.5E-09 3.1E-14 111.1 13.1 160 204-403 146-326 (438)
448 TIGR02788 VirB11 P-type DNA tr 99.1 1.2E-09 2.5E-14 107.5 11.9 127 209-402 136-263 (308)
449 PRK06793 fliI flagellum-specif 99.1 1.2E-09 2.7E-14 110.9 12.0 142 204-398 144-292 (432)
450 cd01131 PilT Pilus retraction 99.0 2.5E-09 5.4E-14 98.4 11.8 54 340-402 66-119 (198)
451 TIGR02168 SMC_prok_B chromosom 99.0 3.6E-10 7.7E-15 128.8 7.5 72 328-402 1087-1162(1179)
452 PRK13830 conjugal transfer pro 99.0 6E-09 1.3E-13 114.8 15.0 58 345-402 649-715 (818)
453 PRK13695 putative NTPase; Prov 99.0 4.7E-10 1E-14 100.9 4.9 66 330-401 78-145 (174)
454 PRK06067 flagellar accessory p 99.0 8E-09 1.7E-13 97.3 12.4 72 331-402 101-183 (234)
455 COG0178 UvrA Excinuclease ATPa 98.9 5.5E-09 1.2E-13 110.8 11.7 118 277-402 427-553 (935)
456 TIGR02169 SMC_prok_A chromosom 98.9 1.5E-09 3.3E-14 123.8 7.0 73 328-403 1072-1148(1164)
457 smart00382 AAA ATPases associa 98.9 4.3E-08 9.2E-13 82.3 13.9 59 330-388 60-124 (148)
458 PRK06995 flhF flagellar biosyn 98.9 7.3E-09 1.6E-13 106.8 10.6 152 205-388 244-400 (484)
459 TIGR03238 dnd_assoc_3 dnd syst 98.9 1.2E-09 2.7E-14 111.1 4.4 51 204-258 19-70 (504)
460 PRK02224 chromosome segregatio 98.9 3.6E-09 7.7E-14 117.9 8.1 74 328-403 779-865 (880)
461 cd01125 repA Hexameric Replica 98.9 8.4E-09 1.8E-13 97.6 9.3 46 345-391 108-160 (239)
462 TIGR00611 recf recF protein. A 98.8 8.1E-09 1.8E-13 103.7 7.0 59 330-391 275-342 (365)
463 cd01130 VirB11-like_ATPase Typ 98.8 1.2E-08 2.7E-13 92.8 7.0 85 206-292 14-100 (186)
464 PRK13891 conjugal transfer pro 98.7 2.8E-07 6.1E-12 102.2 16.9 51 341-391 680-731 (852)
465 TIGR01420 pilT_fam pilus retra 98.7 1.5E-07 3.3E-12 93.8 12.1 54 340-402 187-240 (343)
466 COG0419 SbcC ATPase involved i 98.6 7.9E-08 1.7E-12 107.5 8.9 75 327-403 812-894 (908)
467 PRK07196 fliI flagellum-specif 98.6 6.2E-08 1.4E-12 98.7 7.2 88 203-291 142-239 (434)
468 PRK05399 DNA mismatch repair p 98.6 1.3E-07 2.9E-12 104.5 10.1 137 205-400 596-738 (854)
469 PF08370 PDR_assoc: Plant PDR 98.6 8.2E-08 1.8E-12 71.6 5.4 56 76-131 9-64 (65)
470 TIGR02655 circ_KaiC circadian 98.6 1.2E-09 2.7E-14 113.7 -6.5 164 206-403 9-188 (484)
471 TIGR02680 conserved hypothetic 98.5 1.6E-07 3.4E-12 108.6 7.5 59 329-390 1246-1316(1353)
472 PRK06002 fliI flagellum-specif 98.5 3.9E-07 8.4E-12 93.1 9.2 82 178-274 139-230 (450)
473 cd02023 UMPK Uridine monophosp 98.5 1.4E-07 2.9E-12 86.5 5.4 114 219-364 1-114 (198)
474 TIGR03881 KaiC_arch_4 KaiC dom 98.5 4.7E-08 1E-12 91.6 1.5 46 206-254 8-56 (229)
475 PRK13898 type IV secretion sys 98.5 5.3E-06 1.2E-10 91.7 17.7 48 344-391 638-686 (800)
476 PRK09825 idnK D-gluconate kina 98.4 1.5E-07 3.2E-12 85.1 4.1 68 216-289 2-71 (176)
477 PLN03210 Resistant to P. syrin 98.4 1E-06 2.3E-11 100.9 8.9 45 209-254 199-243 (1153)
478 PRK13873 conjugal transfer ATP 98.3 1E-05 2.2E-10 89.6 16.1 47 345-391 632-679 (811)
479 cd00009 AAA The AAA+ (ATPases 98.3 3.5E-06 7.5E-11 71.3 9.4 65 336-401 72-146 (151)
480 PF01061 ABC2_membrane: ABC-2 98.3 1.8E-07 3.9E-12 85.1 1.3 62 3-64 149-210 (210)
481 PF13555 AAA_29: P-loop contai 98.3 8.5E-07 1.8E-11 65.8 4.1 35 207-241 12-47 (62)
482 cd01122 GP4d_helicase GP4d_hel 98.3 4.5E-06 9.8E-11 80.2 10.1 36 204-239 17-52 (271)
483 TIGR01026 fliI_yscN ATPase Fli 98.2 2.6E-05 5.7E-10 80.1 14.9 152 203-391 150-322 (440)
484 TIGR00767 rho transcription te 98.2 2.4E-06 5.2E-11 85.9 6.9 53 178-242 130-193 (415)
485 PRK00454 engB GTP-binding prot 98.2 2.4E-05 5.3E-10 70.8 13.0 46 330-379 147-195 (196)
486 PF00488 MutS_V: MutS domain V 98.2 6.5E-05 1.4E-09 71.1 15.9 46 346-391 120-167 (235)
487 PF13558 SbcCD_C: Putative exo 98.2 4.5E-06 9.8E-11 67.0 6.4 47 329-375 31-90 (90)
488 PRK08149 ATP synthase SpaL; Va 98.2 4.8E-06 1E-10 84.9 8.0 69 203-272 138-214 (428)
489 PRK01889 GTPase RsgA; Reviewed 98.2 1.7E-06 3.7E-11 86.8 4.6 79 206-287 184-262 (356)
490 PRK06315 type III secretion sy 98.1 8.7E-06 1.9E-10 83.3 9.1 50 203-254 151-200 (442)
491 TIGR00235 udk uridine kinase. 98.1 1.1E-06 2.3E-11 81.3 2.0 28 215-242 4-31 (207)
492 PRK09270 nucleoside triphospha 98.1 4.1E-06 8.9E-11 78.8 5.5 75 215-293 31-109 (229)
493 PF06422 PDR_CDR: CDR ABC tran 98.1 4.1E-06 8.8E-11 69.0 4.7 54 76-131 29-83 (103)
494 TIGR02524 dot_icm_DotB Dot/Icm 98.1 2.5E-05 5.4E-10 78.4 10.8 28 215-242 132-159 (358)
495 PRK10078 ribose 1,5-bisphospho 98.1 3.8E-06 8.3E-11 76.3 4.6 51 217-272 2-55 (186)
496 TIGR00554 panK_bact pantothena 98.0 3.6E-06 7.8E-11 81.8 4.2 74 218-293 63-139 (290)
497 TIGR02903 spore_lon_C ATP-depe 98.0 1.7E-05 3.7E-10 85.0 9.2 112 216-375 174-291 (615)
498 cd01876 YihA_EngB The YihA (En 98.0 1.9E-05 4.2E-10 68.6 7.9 43 330-376 122-169 (170)
499 cd01136 ATPase_flagellum-secre 98.0 9.8E-06 2.1E-10 80.0 6.4 49 204-255 57-105 (326)
500 PRK10416 signal recognition pa 98.0 5.2E-06 1.1E-10 81.9 4.3 72 215-288 112-192 (318)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-87 Score=725.36 Aligned_cols=394 Identities=51% Similarity=0.856 Sum_probs=342.3
Q ss_pred CceeeecccCCHHHHHHHHHHHHHHHHHHhcccccCCCccchhhhhhccChHHHHHHHHHhhhcCCCCccccC--CC---
Q 015591 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEFLAPRWQKML--PT--- 75 (404)
Q Consensus 1 ~fr~~~~~~~~~~~a~~~~~~~~~~~~~~~Gf~i~~~~~~~w~~W~~~i~p~~y~~~al~~nef~~~~~~~~~--~~--- 75 (404)
+||++|++||++..|+++|++.++++.+|+||+||.++||+||||++||||++|||||+|+|||++++|+|.. |+
T Consensus 588 lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n 667 (1391)
T KOG0065|consen 588 LFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDN 667 (1391)
T ss_pred HHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccc
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999972 11
Q ss_pred -----------CcchhhhhhhccCcc-----cccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhhh
Q 015591 76 -----------NTTIGQEILESRGLN-----FDGYLFWISLGALFGFALLLNIGFTLALTFLKTSGSSRSMISLEKFSEM 139 (404)
Q Consensus 76 -----------~~~~G~~~l~~~~~~-----~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (404)
+.++|.+|++.++|. |.+.|+|+++|++++|.++|.++..++++++++....+.....++..+.
T Consensus 668 ~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~ 747 (1391)
T KOG0065|consen 668 ISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEK 747 (1391)
T ss_pred cccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhh
Confidence 356899999998877 8899999999999999999999999999999987777666555544332
Q ss_pred cccC-CCCCccccccCCCCCCCCccccccCCcccCCCCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCc
Q 015591 140 RVSE-DSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGV 218 (404)
Q Consensus 140 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 218 (404)
.... ........... +.....+..+..+.++..++++||.+.++.+.+++.. .+++++|+||++.++||.
T Consensus 748 ~~~~~~~~~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~q---G~~~qLL~~V~G~~kPG~ 818 (1391)
T KOG0065|consen 748 KKVKSAGSSSEIEKLD------DSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQ---GGTRQLLNNVSGAFKPGV 818 (1391)
T ss_pred hcchhccccccccccc------cccccccccccCCCccccccccceEEEEeCCcccccc---ccceEhhhcCceEecCCc
Confidence 1111 00000000000 0000012344455666677777777776665554332 367889999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN 298 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~ 298 (404)
++||||+||||||||||+||||.+.|.++|+|+++|.|.+.+.++|.+|||+|+|.|.+.+||||.|.|+|.+|++.+++
T Consensus 819 LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~ 898 (1391)
T KOG0065|consen 819 LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVS 898 (1391)
T ss_pred eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCC
Confidence 99999999999999999999999999999999999999887899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 015591 299 SKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP-SIIFMDEPTTGLDARAAAIIMRAVKNVV 377 (404)
Q Consensus 299 ~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p-~iLlLDEPtsgLD~~~~~~i~~~l~~l~ 377 (404)
.+++.++++++++.++|++++|.+||.|| .+||.+|||||+||++|++|| .||+|||||||||++++..|++.+++++
T Consensus 899 ~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla 977 (1391)
T KOG0065|consen 899 DEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLA 977 (1391)
T ss_pred HHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 899999999999999999999 7899999999999999999999999999
Q ss_pred hCCCeEEEEecCCCHHHHHhccccccC
Q 015591 378 DTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 378 ~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+.|+||+||+||||.+||+.||++|++
T Consensus 978 ~tGqtIlCTIHQPS~~ife~FD~LLLL 1004 (1391)
T KOG0065|consen 978 DTGQTILCTIHQPSIDIFEAFDELLLL 1004 (1391)
T ss_pred hcCCeEEEEecCCcHHHHHHHhHHHHH
Confidence 999999999999999999999999874
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.7e-74 Score=655.66 Aligned_cols=404 Identities=58% Similarity=0.984 Sum_probs=330.1
Q ss_pred CceeeecccCCHHHHHHHHHHHHHHHHHHhcccccCCCccchhhhhhccChHHHHHHHHHhhhcCCCCccccC-CC-Ccc
Q 015591 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEFLAPRWQKML-PT-NTT 78 (404)
Q Consensus 1 ~fr~~~~~~~~~~~a~~~~~~~~~~~~~~~Gf~i~~~~~~~w~~W~~~i~p~~y~~~al~~nef~~~~~~~~~-~~-~~~ 78 (404)
+||++++++|++..|+.+++++++++++|+||+||+++||+||+|++||||++|||+|+++|||.+..|.+.. .+ ..+
T Consensus 666 l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~ 745 (1470)
T PLN03140 666 IFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTR 745 (1470)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999886432 22 467
Q ss_pred hhhhhhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhhhcccC-------CCCCccc-
Q 015591 79 IGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTFLKTSGSSRSMISLEKFSEMRVSE-------DSTSGEI- 150 (404)
Q Consensus 79 ~G~~~l~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~- 150 (404)
.|+++|+++|+..++.|+|+++|++++|+++|.+++++++++.+...........++..+..... +.++...
T Consensus 746 ~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1470)
T PLN03140 746 LGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNT 825 (1470)
T ss_pred cHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccccccccccccc
Confidence 89999999999998899999999999999999999999999987543333222211111000000 0000000
Q ss_pred --cc----c-CCC-----CCC-C-CccccccCCcccCCCCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeC
Q 015591 151 --VK----G-HSR-----STP-M-TNKESYKGKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRP 216 (404)
Q Consensus 151 --~~----~-~~~-----~~~-~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~ 216 (404)
.. . ... ... . .........+.++..+.+++|+||+|.++.+.+.++.+...+++++|+|||++++|
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~ 905 (1470)
T PLN03140 826 REVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRP 905 (1470)
T ss_pred ccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEEC
Confidence 00 0 000 000 0 00011112334566778999999999998776655555555566899999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCcc
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPE 296 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~ 296 (404)
|+++||+||||||||||||+|+|+.+++..+|+|.+||.+.....+++.+|||+|+|.+++.+||+||+.|++.++.+..
T Consensus 906 Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~ 985 (1470)
T PLN03140 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE 985 (1470)
T ss_pred CeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999987666789999999886545567789999999999999999999999988776555
Q ss_pred CChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 015591 297 INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376 (404)
Q Consensus 297 ~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l 376 (404)
.+.+++.++++++++.++|.+.+|+.+|.+++++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++
T Consensus 986 ~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140 986 VSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 55556677899999999999999999998877889999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 377 VDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 377 ~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+++|+|||+++|||+.++++.||+++++
T Consensus 1066 ~~~g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140 1066 VDTGRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred HHCCCEEEEEeCCCCHHHHHhCCEEEEE
Confidence 8889999999999998899999998863
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.7e-70 Score=620.65 Aligned_cols=392 Identities=35% Similarity=0.614 Sum_probs=308.4
Q ss_pred CceeeecccCCHHHHHHHHHHHHHHHHHHhcccccCCCccchhhhhhccChHHHHHHHHHhhhcCCCCccccC--C----
Q 015591 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEFLAPRWQKML--P---- 74 (404)
Q Consensus 1 ~fr~~~~~~~~~~~a~~~~~~~~~~~~~~~Gf~i~~~~~~~w~~W~~~i~p~~y~~~al~~nef~~~~~~~~~--~---- 74 (404)
+|++++|++||++.|+.+++++++++++|+||+||+++||+||+|++||||++|||||++.|||++..++|.. |
T Consensus 549 ~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~ 628 (1394)
T TIGR00956 549 LFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGG 628 (1394)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999841 1
Q ss_pred ------------------C-CcchhhhhhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhh
Q 015591 75 ------------------T-NTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTFLKTSGSSRSMISLEK 135 (404)
Q Consensus 75 ------------------~-~~~~G~~~l~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (404)
| ..+.|++||+. +|.+...|+|+++|++++|+++|.++.++++++.+...........++
T Consensus 629 y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~~~~~~~~~~ 707 (1394)
T TIGR00956 629 YDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRR 707 (1394)
T ss_pred CCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceEeecc
Confidence 1 13579999985 455566899999999999999999999999999875433222211111
Q ss_pred h-h-h-hcc-cC-----CCCCccccccCCCCCCCCccccccCCcccCCCCcEEEEeceeEEeeccccccccccccCceee
Q 015591 136 F-S-E-MRV-SE-----DSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRL 206 (404)
Q Consensus 136 ~-~-~-~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~i 206 (404)
. . . ... .+ .+.++..............................++|+||+|.++. +.+++++
T Consensus 708 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~---------~~~~~~i 778 (1394)
T TIGR00956 708 GSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKI---------KKEKRVI 778 (1394)
T ss_pred ccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEEecC---------CCCCcEe
Confidence 0 0 0 000 00 00000000000000000000000000000112335899999998742 1234679
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHH
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESV 285 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l 285 (404)
|+|||+++++||++||+||||||||||||+|+|+.+++ +.+|+|.+||++.. ..+++.+|||+|++.+++.+||+||+
T Consensus 779 L~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~E~L 857 (1394)
T TIGR00956 779 LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRESL 857 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhcceeeecccccCCCCCCHHHHH
Confidence 99999999999999999999999999999999987643 34699999999874 35678899999999999999999999
Q ss_pred HHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCC-EEEEeCCCCCCCHH
Q 015591 286 IFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS-IIFMDEPTTGLDAR 364 (404)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~-iLlLDEPtsgLD~~ 364 (404)
.|++.++.+...+.+++.++++++++.++|.+++|+.+|.++. +||||||||++||+||+.+|+ +|||||||||||+.
T Consensus 858 ~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~ 936 (1394)
T TIGR00956 858 RFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQ 936 (1394)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHH
Confidence 9998887655555566778899999999999999999987654 799999999999999999997 99999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 365 AAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 365 ~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
++..|++.|++++++|+|||+++|||+.++++.||+++++
T Consensus 937 ~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L 976 (1394)
T TIGR00956 937 TAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLL 976 (1394)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEE
Confidence 9999999999998889999999999998889999998763
No 4
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-51 Score=372.40 Aligned_cols=202 Identities=26% Similarity=0.367 Sum_probs=177.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
|+++||+++| ++.++|+|||++|++||+++|+|||||||||||+||.++..++ +|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~--~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD--SGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC--CceEEECCEecc
Confidence 6788888766 5678999999999999999999999999999999999998875 599999997542
Q ss_pred ----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 259 ----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 ----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
....|+.+|+|||+..+||.+||.||+..+...- ...++++.++.+.++++.+||.+.+|.. +.+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 3457889999999999999999999999875322 2345667778889999999999888876 4579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.||+||+... .-+..||++.
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviF 208 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIF 208 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEE
Confidence 9999999999999999999999999999999999999999999999999999999874 4567888764
No 5
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.6e-51 Score=430.08 Aligned_cols=222 Identities=43% Similarity=0.774 Sum_probs=205.9
Q ss_pred CCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEEC
Q 015591 175 EPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIG 253 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~ 253 (404)
.+..+.|+|+++..+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+...+ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3457999999997643211 3478999999999999999999999999999999999998764 578999999
Q ss_pred CccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 254 GYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 254 G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
|++...+.+++.+|||.|+|.+++++||+|++.|++.+|.+.+.+.++++++++++++.++|.+++|+.+|.++.+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98877788999999999999999999999999999999999888889999999999999999999999999988889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||+||.+|+.||+||+|||||||||+.++.++++.|++++++|+|||++.|||+.++|++||+++++
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lL 244 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLL 244 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhh
Confidence 99999999999999999999999999999999999999999999889999999999999999999998863
No 6
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-50 Score=371.02 Aligned_cols=201 Identities=27% Similarity=0.392 Sum_probs=178.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+.++++++.|. ...+|+|||++|.+||+++|+||||||||||||+|+|+.+|. +|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~--~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT--SGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCccc
Confidence 367888888763 467999999999999999999999999999999999998875 59999999886
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. .....++||+|++.++|..||+||+.++...+. ..++++.+++++.++.+||.+..|+. +++|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 2 345678999999999999999999999976653 34556677899999999999998886 5689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|++|||||+.+|++|+||||+++||+.++..+.+.|.++.+ .++||++||||.+ |..-+.|+|+++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl 204 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVL 204 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEe
Confidence 99999999999999999999999999999999999999875 4899999999998 667799998764
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.4e-49 Score=363.59 Aligned_cols=204 Identities=27% Similarity=0.425 Sum_probs=172.3
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|... .....+|++|||+|++||++||+|||||||||||++|.|+..| ++|.|.++|.++.
T Consensus 2 i~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcC
Confidence 4578888877431 1225799999999999999999999999999999999999887 4699999997643
Q ss_pred h------hhh-cceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcc-ccccCCCCCC
Q 015591 259 Q------ETF-ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD-SLVGIPGVNG 330 (404)
Q Consensus 259 ~------~~~-~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~vg~~~~~~ 330 (404)
. ..+ ++.+|||+|+..++|.+||+||+.++..+.... .....+.++++++.+||.+..+ .. +.+
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~e 142 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSE 142 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chh
Confidence 1 123 457999999999999999999999987654322 2245677889999999986655 43 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||||+|||||+.+|++|+.||||.+||+++.+.|++++++++++ |+|||++|||+ ++.+.+||++.
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~ 214 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIE 214 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999865 99999999998 57889999874
No 8
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-49 Score=367.52 Aligned_cols=205 Identities=30% Similarity=0.449 Sum_probs=176.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ +.++|+||||++++|++++|+||||||||||+|+|+|+.+|. +|+|.+.|.+.
T Consensus 4 ~i~v~nl~v~y~-------------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~--~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG-------------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS--SGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC-------------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC--cceEEEccccc
Confidence 489999999873 236999999999999999999999999999999999988874 59999999876
Q ss_pred chhhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 VQETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
....-+..+|||||.. ..-+..||+|-+.++...+.. -....+.+++.++++++.+|+.++.|+.+| +||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 5444456899999964 234567999999987543321 111223446889999999999999999987 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+||+.|||||+.+|++|+|||||+|+|+.++..|+++|++++++|+||++++||++ .+.+.||+++.
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~ 211 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVIC 211 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEE
Confidence 999999999999999999999999999999999999999999988999999999998 69999999875
No 9
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=369.59 Aligned_cols=207 Identities=26% Similarity=0.313 Sum_probs=181.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
|++++|++.|... ..+...+|+|||++|++||+++|+|.||||||||+||+.++..|. +|+|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt--sG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT--SGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC--CceEEEcCEecc
Confidence 6889999877431 112457999999999999999999999999999999999998875 599999997643
Q ss_pred ------hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 ------QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ------~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
.+.+|+.+|++||+..++.+.||.||+.|+..+.. .++++.++++.++++.+||.+.++.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 24568899999999999999999999999987764 45678889999999999999877765 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||+|||||+.+|+||+.|||||+|||++.+.|+++|+++.++ |.||++|||+++ -+-..||++.++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm 215 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVL 215 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEe
Confidence 99999999999999999999999999999999999999999999865 999999999986 588899998763
No 10
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.8e-48 Score=373.57 Aligned_cols=202 Identities=32% Similarity=0.454 Sum_probs=179.2
Q ss_pred EEEEeceeEEeeccccccccccccC-ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEK-KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
.+.++||++.| + ++.+|+||||++++|+++||+||||||||||+|+|+|+..| .+|+|.++|.+
T Consensus 4 ~i~~~~l~k~~-------------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~ 68 (293)
T COG1131 4 VIEVRNLTKKY-------------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYD 68 (293)
T ss_pred eeeecceEEEe-------------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEe
Confidence 36778888766 4 47899999999999999999999999999999999999887 46999999987
Q ss_pred Cch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 257 KVQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 257 ~~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
... ...++.+||++|++.+++.+|++||+.|.+.++.... ....++++++++.++|.+..++.+ ++||+|
T Consensus 69 ~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G 140 (293)
T COG1131 69 VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGG 140 (293)
T ss_pred CccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHH
Confidence 543 4667889999999999999999999999998876432 345678999999999998555554 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG-RTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++||+||+.+|++|||||||+||||.++..+.+.|++++++| +||+++||+++ ++...||++++
T Consensus 141 ~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~i 209 (293)
T COG1131 141 MKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVII 209 (293)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999876 89999999997 78999999875
No 11
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.9e-47 Score=406.40 Aligned_cols=229 Identities=32% Similarity=0.570 Sum_probs=197.8
Q ss_pred CCcEEEEeceeEEeeccc----------------cccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 175 EPLTVAFQDLKYYIDTPL----------------EMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~----------------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
.+.+++|.+++|.++... ..++++++++++++|+|||+++++||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 457899999999885432 1223444556678999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC
Q 015591 239 GRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI 318 (404)
Q Consensus 239 g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 318 (404)
|+.+++..+|+|.+||++... ..++.++||+|++.+++.+||+||+.|++.++.+.....+++.+.++++++.++|.+.
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 987765457999999987643 3446689999999999999999999998876654344455566778999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhc
Q 015591 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 319 ~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~f 398 (404)
.|+.+|....++||||||||++|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999876677899999999999999999999999999999999999999999999998789999999999998899999
Q ss_pred cccccC
Q 015591 399 DEVKQF 404 (404)
Q Consensus 399 d~~l~~ 404 (404)
|+++++
T Consensus 275 D~iilL 280 (659)
T PLN03211 275 DSVLVL 280 (659)
T ss_pred ceEEEe
Confidence 999763
No 12
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.5e-48 Score=352.76 Aligned_cols=203 Identities=28% Similarity=0.380 Sum_probs=180.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+++++|++++ +++.+++|||++|++||+++|+||||||||||||+|.|+.+|. +|+|+++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~--~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD--KGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC--CCeEEEcCcch
Confidence 58999999865 5788999999999999999999999999999999999999885 59999999975
Q ss_pred ch------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCC
Q 015591 258 VQ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~ 330 (404)
.. ...++++|++||+-.+|..+||+||+.|..+.+ ...+++..++.+..-++.+||... ++.. +.+
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 32 245788999999999999999999999986543 345666777788888999999876 5554 468
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||+||++||||++.+|+||++||||+||||.+...+.++|+++.+. |.|++++|||.+ +++..+|++..
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~ 218 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAV 218 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEE
Confidence 9999999999999999999999999999999999999999999999876 999999999997 79999999865
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-48 Score=355.54 Aligned_cols=202 Identities=27% Similarity=0.370 Sum_probs=179.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++|+||++.| +++.+++|+|++|++||+++++|||||||||+||+|.++..|+ +|+|++||+++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept--~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT--SGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC--CceEEECCeecc
Confidence 6788888866 4577999999999999999999999999999999999998874 599999999854
Q ss_pred ---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC--CccccccCCCCCCCCH
Q 015591 259 ---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG--IKDSLVGIPGVNGLST 333 (404)
Q Consensus 259 ---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~vg~~~~~~LSg 333 (404)
...+|+.+|||-|+-.+||.+||.||+.+...+.. .++++.+++++++++.++|+. +.++. +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~---w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLG---WDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcC---CCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 35689999999999999999999999998765542 345667888999999999974 55554 578999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|||.+||||+++|++|++|||+++|||.++.++.+.++++.++ |+|||++|||.. |.+.+.|++.++
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm 209 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVM 209 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEe
Confidence 9999999999999999999999999999999999999999999865 999999999997 899999998763
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.4e-47 Score=360.65 Aligned_cols=206 Identities=27% Similarity=0.385 Sum_probs=179.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++.+||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++
T Consensus 2 ~L~~~~ls~~y-------------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~--~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGY-------------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK--SGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEE-------------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCCch
Confidence 37788999877 3578999999999999999999999999999999999988874 59999999975
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCcc-CChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPE-INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
. ...+.+.++||+|.....+.+||+|-+.++..-+.... ...++..+.++++++.+++.+++++.+. +|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccCh
Confidence 4 35678899999999888889999999999865433211 1234455679999999999999998864 7999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||+.|||||+.+|++|+||||||+||...+.++++.++++++ +|+|||++.||++ -.+.+||+++++
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~l 212 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILL 212 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999985 5999999999998 477799998763
No 15
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-47 Score=372.71 Aligned_cols=204 Identities=27% Similarity=0.431 Sum_probs=181.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| ++..+++|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|+++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~--~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS--SGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEC
Confidence 48888888876 4578999999999999999999999999999999999999875 59999999986
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.. ...+|.+|+|||+..+||.|||+||+.|+..++. ...+++..++++++++.++|.+..++. +++||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHH
Confidence 54 3457889999999999999999999999987432 223455678999999999999988876 357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||||+.+|++|+||||.|+||..-+.++...++++.++ |.|.|++|||.+ |.+.+.|++.++
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm 210 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVM 210 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEc
Confidence 9999999999999999999999999999999999999999764 999999999997 899999998763
No 16
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-47 Score=369.85 Aligned_cols=202 Identities=26% Similarity=0.393 Sum_probs=181.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. +..+|+|+|+++++||+++|+||||||||||||+|||+..++ +|+|.++|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~--~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT--SGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEC
Confidence 478888888773 222999999999999999999999999999999999998874 59999999986
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
+. ...+|.+++|||+..++|.|||+||+.|+..++. ..+++..++++++.+.+++.++.|+. +.+||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 54 3456889999999999999999999999987764 34567788999999999999999887 357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||+|||||+++|++++||||+|+||+..+..+...|+++.++ |.|+|.+|||.. |.+.+.|++.+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~V 206 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVV 206 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEE
Confidence 9999999999999999999999999999999999999999865 999999999985 89999999875
No 17
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-47 Score=392.63 Aligned_cols=209 Identities=25% Similarity=0.409 Sum_probs=183.4
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
...|+|+||+|.|+.. .+.++|+|+||+++|||++|||||||+||||+.++|-.++.|. +|+|.+||+
T Consensus 463 ~G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt--sG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT--SGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--CCeEEECCe
Confidence 3469999999999753 3567999999999999999999999999999999999999875 599999999
Q ss_pred cCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 256 PKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 256 ~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
|+. ...+|+.+|+|.|++.+ +..||+|||.|+......+++..+.+.+.+++++. ++++.+||.+|+.|. .||
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvL-Fs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~-qLS 606 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVL-FSGSIRENIAYGLDNATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGS-QLS 606 (716)
T ss_pred ehhhcCHHHHHHHeeeeecccee-ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHH--hCccccccccCCccc-ccc
Confidence 854 45688999999998885 56799999999876433344555667778888888 688899999999986 599
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||++|||||++||+||||||+||+||.+++..|.+.|.++. +++|||+|+|++| ..+..|+|.+
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIAHRLS--TV~~Ad~Ivv 674 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIAHRLS--TVRHADQIVV 674 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEehhhh--HhhhccEEEE
Confidence 999999999999999999999999999999999999999999987 4699999999997 4778888765
No 18
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=8.2e-47 Score=334.22 Aligned_cols=196 Identities=27% Similarity=0.350 Sum_probs=172.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
|+|+||++.|+. ++++|+||||++++||++-|+||||||||||||+|.+...|. +|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt--~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT--RGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC--CceEEECCeecc
Confidence 788999987742 367999999999999999999999999999999999987764 599999999853
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. .-+||.+|+|+|+..+++..||+||+.|+...... ...+.++++.++++.+||.+.++.+ +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~---~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK---PPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCC---CHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 2 34689999999999999999999999999876543 4456678899999999998877765 45799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~f 398 (404)
||||||++||||++.+|++||.||||.+|||..+++|++++.++.+.|.||+++|||.+ +.+..
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~--lv~~~ 203 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE--LVNRM 203 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH--HHHhc
Confidence 99999999999999999999999999999999999999999999988999999999964 45443
No 19
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.9e-46 Score=399.12 Aligned_cols=211 Identities=27% Similarity=0.393 Sum_probs=181.9
Q ss_pred CCCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC
Q 015591 174 FEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIG 253 (404)
Q Consensus 174 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~ 253 (404)
.-...++++||+|.|.. .+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|. +|+|++|
T Consensus 467 ~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~--~G~I~~d 533 (709)
T COG2274 467 KLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ--QGRILLD 533 (709)
T ss_pred ccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEEC
Confidence 34457999999998853 3346999999999999999999999999999999999999875 5999999
Q ss_pred CccC---chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 254 GYPK---VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 254 G~~~---~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
|.|+ +...+|+.+|||+|++. +++.|++||+.++......+++..+.+.+.+++.+. .++..+|+.+|+.|. +
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~-Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E~G~-~ 609 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPF-LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGEGGA-N 609 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccch-hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH--hcccccccccccCCC-C
Confidence 9985 44678999999999555 667899999999865443344444555666777777 577889999999876 6
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||||++|||||+++|+|||||||||+||+++++.|++.|.++. .|+|+|+++|+++ ....+|+++++
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl 680 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVL 680 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEc
Confidence 99999999999999999999999999999999999999999999986 6899999999996 68899999864
No 20
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-46 Score=355.51 Aligned_cols=194 Identities=30% Similarity=0.461 Sum_probs=173.7
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc---cCch-hhhcceeEEeecCCCCCC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY---PKVQ-ETFARVSGYCEQTDIHSP 277 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~---~~~~-~~~~~~~g~v~Q~~~~~~ 277 (404)
+...+++|||++|+.||++||+|||||||||||++|||+.+|+ .|.|.+||. +... ....|.+|||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~--~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC--CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 5567999999999999999999999999999999999999875 599999999 5433 334578999999999999
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 357 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEP 357 (404)
.|||.+||.|+...+. ...+.++.+.+++++++.+.|++..+.. +.+||||||||+++||||+..|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~~-~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVRK-ERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhcccccc-cCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 9999999999987662 2234566778899999999999998876 468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 358 TTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 358 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+++||..-+.++.+.|+++.++ |.|++++|||++ |+++.+|+++++
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl 211 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVL 211 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEe
Confidence 9999999999999999999876 999999999997 899999999863
No 21
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-46 Score=335.67 Aligned_cols=202 Identities=29% Similarity=0.363 Sum_probs=169.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC---CCCceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK---TTGSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~---~~~~~~G~I~i~G 254 (404)
.++++||+++| +++++|+|||+.|++++++||||||||||||||+++.... +.-..+|+|.++|
T Consensus 7 ~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 58899999988 4578999999999999999999999999999999999853 3334679999999
Q ss_pred ccCc-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCC
Q 015591 255 YPKV-----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGV 328 (404)
Q Consensus 255 ~~~~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~ 328 (404)
+++. ...+|+.+|+|||.+.-|| +|++||+.|+.++..... ++-++.+++.++...|.+- .|++- ..+
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~-~sa- 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLH-KSA- 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhh-CCc-
Confidence 8753 3467899999999999888 899999999987765432 4556788888888888643 34432 222
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~ 400 (404)
.+|||||+|||+|||||+.+|+||+||||||+|||.+..+|-++|.+|+ +.-|||++||++.+ .....|+
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQ-AaRvSD~ 217 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQ-AARVSDY 217 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHH-HHHHhHh
Confidence 4699999999999999999999999999999999999999999999997 57999999999864 3444444
No 22
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.8e-45 Score=358.88 Aligned_cols=202 Identities=27% Similarity=0.407 Sum_probs=176.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++.+|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~--~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEec
Confidence 589999999773 357999999999999999999999999999999999998764 59999999875
Q ss_pred ch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. ...++.+||++|++.+++.+|++||+.|.+.++. ....+..+.++++++.+++.+..++.++ +||+||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHH
Confidence 42 3456789999999888899999999998665432 2223344567899999999888888764 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+++.
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~i 210 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCV 210 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999877999999999997 78899999875
No 23
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.4e-45 Score=340.72 Aligned_cols=203 Identities=24% Similarity=0.332 Sum_probs=171.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+. +.+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT--RGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEehh
Confidence 678888887631 1246999999999999999999999999999999999988764 699999998753
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ..+++.++|++|++.+++.+||+||+.+....+. ....+..+.+.++++.+++.+..++.. .+||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 1245679999999888888999999998754321 122334566889999999987777654 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|+++.
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~ 210 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLT 210 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999777999999999996 67788999875
No 24
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=9.9e-46 Score=393.54 Aligned_cols=203 Identities=41% Similarity=0.723 Sum_probs=184.9
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCccCchhhhcceeEEeecCCCCCCCCC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~T 280 (404)
+++++|+|+|+++++||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999987664 247999999998765667888999999999999999
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~-~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
|+||+.|++.++.+.....+++.+.++++++.+++.+.+|+.+|.++ .++||||||||++|||||+.+|++|+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988776655666777889999999999999999999753 45799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+.++..+++.|++++++|+|||+++|||+.++++.||+++++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll 240 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM 240 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEe
Confidence 999999999999999998789999999999998999999999864
No 25
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.4e-46 Score=338.14 Aligned_cols=206 Identities=27% Similarity=0.330 Sum_probs=176.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+..|+ +++++|+||||+|++||++||+|+|||||||||++|+|+.++. +|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t--~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT--SGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC--cceEEecccch
Confidence 488999998774 3578999999999999999999999999999999999987764 59999999763
Q ss_pred c------hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-----ccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 258 V------QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-----PEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 258 ~------~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
. .+.+|+.+||++|+..+.+.+||.+|+..+..-+.+ -....++.+..+-+.++++|+.+.+-+..
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 2 245678899999999999999999999987543322 11223455567788999999988777664
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..|||||+|||+|||||+.+|++++.|||+++|||.++++||+.|+++++ .|.|||+..|+.+ -..++|||++-
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riig 220 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIG 220 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheE
Confidence 37999999999999999999999999999999999999999999999986 5999999999997 46789999864
No 26
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-46 Score=334.14 Aligned_cols=203 Identities=28% Similarity=0.386 Sum_probs=181.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
+++.+++++|+. ..++++||||+++.||+++|+|||||||||+|++|++++.|+ +|.|.++|.+..
T Consensus 2 l~v~~l~K~y~~------------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~--~G~v~idg~d~~ 67 (245)
T COG4555 2 LEVTDLTKSYGS------------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTV 67 (245)
T ss_pred eeeeehhhhccC------------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC--CceEEEeecccc
Confidence 566777776643 234899999999999999999999999999999999998875 599999999853
Q ss_pred --hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 --QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 --~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
+...++.+|.++.+..++..+|++|||.|.+++.. ....+.+++++++.+.++|.++.|+.+| ++|.|||
T Consensus 68 ~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~k 139 (245)
T COG4555 68 RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMK 139 (245)
T ss_pred cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhH
Confidence 34568899999987888999999999999988764 3456667889999999999999999987 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||||+++|++++|||||||||..+...+.+.+++++++|++||++||..+ |+.++||+++++
T Consensus 140 qkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivl 206 (245)
T COG4555 140 QKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVL 206 (245)
T ss_pred HHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEE
Confidence 9999999999999999999999999999999999999999888999999999997 899999999864
No 27
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-45 Score=344.60 Aligned_cols=201 Identities=28% Similarity=0.385 Sum_probs=169.7
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD--SGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEccc
Confidence 5678887662 356999999999999999999999999999999999998764 5999999987532
Q ss_pred ------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 260 ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 260 ------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
..+++.++|++|++.+++.+||+||+.+...... .....+..+.+.++++.+++.+..++.+ ..|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 2346779999999888888999999998643221 1223334566788999999987766664 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~ 209 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAV 209 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999997 68889999875
No 28
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=7.8e-45 Score=359.88 Aligned_cols=206 Identities=24% Similarity=0.293 Sum_probs=175.7
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. .+..++|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~--~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT--SGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEECC
Confidence 6889999887320 11246999999999999999999999999999999999998874 599999998753
Q ss_pred h---h---hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q---E---TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~---~---~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. . ..++.+||++|+..+++.+||+||+.++...+. ...++..+++.++++.++|.+..|... .+||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 1 246789999999998999999999999764332 233445567889999999988877764 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||++|||||+.+|++||||||||+||+.++..+++.|++++++ |.|||++||+++ .+.+.||+++++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl 214 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVI 214 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999865 999999999986 688899998753
No 29
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-45 Score=341.87 Aligned_cols=204 Identities=27% Similarity=0.367 Sum_probs=179.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+.++|++|.|+. + ..+|+++|+++++||.++|+|+||||||||+++|+|+.+|. +|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~-----------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~--~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG-----------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT--SGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC-----------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC--CCEEEECCeec
Confidence 3788999998742 2 57999999999999999999999999999999999998875 59999999875
Q ss_pred c----hhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 258 V----QETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ~----~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ...+++.+|||+|++ ..+...||.|.+.|+..... .+.++..++++++++.+++.+..++. ++.||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g---~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG---LPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC---CCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 4 456788999999985 56788899999999876543 34556778899999999999887776 45799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||+||.+|+.+|++|+|||||||||+.++..+++.++++.++ |+|+|++|||.+ .+.+.+|+++++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl 212 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVL 212 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEE
Confidence 99999999999999999999999999999999999999999999876 799999999997 688899998763
No 30
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-44 Score=336.68 Aligned_cols=200 Identities=30% Similarity=0.429 Sum_probs=168.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD--SGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEEcCc
Confidence 5677777652 356999999999999999999999999999999999988764 6999999987532
Q ss_pred -hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 260 -ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 260 -~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
...++.++|++|++.+++.+|++||+.+...... .......+.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 2235679999998888888999999988653321 122333456788999999987766654 4699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++ ++.+.+|+++.
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~ 203 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAV 203 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEE
Confidence 9999999999999999999999999999999999999876 4999999999986 67889999875
No 31
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=360.60 Aligned_cols=203 Identities=25% Similarity=0.353 Sum_probs=175.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ +++.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~--~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT--SGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC--ceEEEECCEEC
Confidence 378889988762 2356999999999999999999999999999999999998864 69999999876
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.. ...++.+|||+|+..++|.+||+||+.|+...+. ....+..+.++++++.++|.+..++.. .+||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRG---MPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 42 2235789999999999999999999999865331 233445567899999999988877764 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||+|||||+.+|++||||||||+||+.++..+.+.|+++.++ |.|+|++|||++ ++.+++|++++
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~v 207 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVV 207 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999998765 999999999996 79999999875
No 32
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-44 Score=358.96 Aligned_cols=203 Identities=24% Similarity=0.390 Sum_probs=177.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT--EGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC--ceEEEECCEEC
Confidence 488999998762 356999999999999999999999999999999999998874 59999999876
Q ss_pred chh-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQE-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
... ..++.+|||+|+..++|.+||+||+.|+...+. ....+..++++++++.+++.+..++.. ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 432 235789999999999999999999999865432 234455678899999999988877763 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||++|||||+.+|++|||||||++||+.++.++.+.|+++.++ |+|+|++|||++ ++++++|+++++
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm 210 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVM 210 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999765 999999999997 799999998753
No 33
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.5e-44 Score=359.74 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=177.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|. +|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~--~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT--AGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC--ceEEEECCEEC
Confidence 388899998763 356999999999999999999999999999999999998764 59999999875
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.. ...+|.+|||+|+..++|.+||+||+.|+...+. .+..+..+.++++++.++|.+..++.. .+||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~---~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRG---MGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 42 2346789999999999999999999999865431 234455678899999999998887764 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||++|||||+.+|++||||||||+||+.++..+.+.|+++.++ |.|+|++|||++ ++..++|+++++
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl 208 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVM 208 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999998765 999999999997 789999998753
No 34
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.6e-44 Score=336.53 Aligned_cols=205 Identities=28% Similarity=0.402 Sum_probs=168.4
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT--SGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC--ceeEEECCEehh
Confidence 3577888876310 00156999999999999999999999999999999999998764 699999998753
Q ss_pred hh-------hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 259 QE-------TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 259 ~~-------~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 21 124579999999888888999999998754432 122233456889999999987766654 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++. .+|+++.+
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l 213 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIEL 213 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEe
Confidence 99999999999999999999999999999999999999999999976 5899999999997 454 89998753
No 35
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.9e-44 Score=333.81 Aligned_cols=203 Identities=28% Similarity=0.356 Sum_probs=170.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcc
Confidence 57788888662 1346999999999999999999999999999999999988764 699999998753
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ..+++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 1245679999998888888999999998754321 122333467789999999987666654 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l 210 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIIL 210 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEe
Confidence 99999999999999999999999999999999999999999998777999999999996 688889998753
No 36
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=4.8e-44 Score=354.37 Aligned_cols=203 Identities=24% Similarity=0.367 Sum_probs=176.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+ ++.+|+||||+|++||++||+||||||||||+++|+|+.+|. +|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~--~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--ceEEEECCEEC
Confidence 589999999773 457999999999999999999999999999999999998874 69999999875
Q ss_pred ch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. ...++.+||++|+..+++.+|++||+.+....+. ....+..+.++++++.++|.+..++.++ +||+||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVS-----DLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHH
Confidence 32 3456789999999888899999999997654432 2223344567889999999988888764 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+++.+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il 245 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVL 245 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999877999999999997 789999998753
No 37
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-44 Score=335.05 Aligned_cols=202 Identities=27% Similarity=0.395 Sum_probs=168.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~- 69 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT--SGEVLVDGEPVT- 69 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECc-
Confidence 567888766310 01157999999999999999999999999999999999987764 699999998764
Q ss_pred hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHH
Q 015591 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL 339 (404)
Q Consensus 260 ~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl 339 (404)
..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.. ..||||||||+
T Consensus 70 -~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 70 -GPGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred -cccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 245679999998888888999999998754331 222333466889999999987666654 47999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++...+|+++.
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 204 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVV 204 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999865 4899999999997 67888999875
No 38
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-44 Score=332.48 Aligned_cols=199 Identities=23% Similarity=0.396 Sum_probs=169.1
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++.+++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRF-------------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD--SGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEE-------------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCCchhH
Confidence 567777765 2356999999999999999999999999999999999987764 6999999987643
Q ss_pred hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHH
Q 015591 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL 339 (404)
Q Consensus 260 ~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl 339 (404)
..++.++|++|+..+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ .+||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 446679999999888888999999988654332 122334566888999999987666654 47999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~ 200 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLL 200 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEE
Confidence 9999999999999999999999999999999999998777899999999987 67788998865
No 39
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.1e-44 Score=358.21 Aligned_cols=203 Identities=26% Similarity=0.364 Sum_probs=176.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcee--eEEEECCc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME--GEIKIGGY 255 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~--G~I~i~G~ 255 (404)
.++++||++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.++ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 478899998773 35699999999999999999999999999999999999876 46 99999998
Q ss_pred cCch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 256 PKVQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 256 ~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
++.. ...++.+|||+|+..++|.+||+||+.|+...+. ....+..+.++++++.++|.+..++.. ++||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQK---MPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7542 2245779999999999999999999999865432 233445567899999999998888764 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT--GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~--g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |.|+|++|||++ +++.++|+++++
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl 212 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIM 212 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999865 799999999997 789999998763
No 40
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=5.3e-44 Score=349.57 Aligned_cols=202 Identities=25% Similarity=0.372 Sum_probs=172.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEC
Confidence 488899998763 356999999999999999999999999999999999988764 69999999875
Q ss_pred ch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. ...++.+||++|++.+++.+|++||+.+....+. ....+..+.++++++.+++.+..++.++ +|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHH
Confidence 32 2346779999999888889999999987543321 2223334567788999999887777653 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+++.
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~ 207 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCV 207 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999877999999999997 78889999875
No 41
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.6e-44 Score=332.37 Aligned_cols=202 Identities=26% Similarity=0.321 Sum_probs=169.1
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT--SGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEccc
Confidence 5677887662 1246999999999999999999999999999999999988764 6999999986532
Q ss_pred ------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 260 ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 260 ------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
...++.++|++|++.+++.+|++||+.+....+. ...++..+.++++++.+++.+..++.. .+||+
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1245679999999888888999999998754322 122334456788999999987666654 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++.+
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l 209 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIAL 209 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999998767999999999986 677789998753
No 42
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=5.1e-44 Score=337.05 Aligned_cols=204 Identities=27% Similarity=0.395 Sum_probs=169.4
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+...
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRF-------------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT--SGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEE-------------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CceEEECCEECCC
Confidence 467777765 2356999999999999999999999999999999999988764 6999999987532
Q ss_pred ---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccC-------ChhhHHHHHHHHHHHcCCCCCccccccCCCC
Q 015591 260 ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEI-------NSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328 (404)
Q Consensus 260 ---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~-------~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~ 328 (404)
.. .++.++|++|++.+++.+||+||+.+.......... ...+..+.++++++.+++.+..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 12 245689999998888999999999987543221100 12233456789999999987766654
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.+
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l 216 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVL 216 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 479999999999999999999999999999999999999999999998777999999999997 688889998753
No 43
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.9e-44 Score=331.97 Aligned_cols=185 Identities=27% Similarity=0.377 Sum_probs=158.7
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCC-CCCCCCHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDI-HSPQITVE 282 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~-~~~~~Tv~ 282 (404)
+.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.....++.++|++|++. .++.+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES--SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 56999999999999999999999999999999999988764 6999999987643445667999999863 34568999
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD 362 (404)
||+.+...... ...+.+.++++.+++.+..++.+ ..||||||||++|||||+.+|++|||||||+|||
T Consensus 91 e~l~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD-------AGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC-------ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99988643221 11245788999999987777664 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 363 ARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 363 ~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~ 198 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLL 198 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999777999999999997 57788999875
No 44
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-44 Score=333.20 Aligned_cols=200 Identities=28% Similarity=0.359 Sum_probs=169.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 2 ~~~~~~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKY-------------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT--SGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEE-------------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEecCc
Confidence 567777765 2457999999999999999999999999999999999987764 6999999976432
Q ss_pred --hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 260 --ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 260 --~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
...++.++|++|+..+++.+|++||+.+....+. ....+..+.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHH
Confidence 2345679999999888888999999998754332 122334456889999999987777664 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~ 204 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAI 204 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999876 899999999997 68888999865
No 45
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.4e-44 Score=354.74 Aligned_cols=205 Identities=26% Similarity=0.384 Sum_probs=175.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++|+++
T Consensus 2 ~L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT--SGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEC
Confidence 377888888762 356999999999999999999999999999999999998764 59999999876
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. ...++.++||+|+..+++.+||+||+.|+...+.. .....++..++++++++.++|.+..++.. .+|||||
T Consensus 67 ~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 141 (353)
T PRK10851 67 SRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQ 141 (353)
T ss_pred CCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 42 23356799999999999999999999998643211 11233445667899999999988777764 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~v 209 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVV 209 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999865 899999999997 78999999875
No 46
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=6.2e-44 Score=332.54 Aligned_cols=205 Identities=26% Similarity=0.408 Sum_probs=171.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+.. ....++|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--CceEEECCEEcc
Confidence 5778888876310 01126999999999999999999999999999999999998764 699999998754
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ..+++.++|++|++.+++.+||+||+.+....+. ....+..+.++++++.+++.+..++.+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 2 2346779999999888888999999988654321 223344567789999999987777664 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~ 208 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVV 208 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 9999999999999999999999999999999999999999767999999999996 67888999865
No 47
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=7.7e-44 Score=330.63 Aligned_cols=202 Identities=25% Similarity=0.358 Sum_probs=169.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++.+|+++||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD--SGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECCc
Confidence 5677887662 356999999999999999999999999999999999998764 6999999987521
Q ss_pred -----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 260 -----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 260 -----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
...++.++|++|++.+++.+|++||+.+...... .....+..+.++++++.+++.+..++.+ .+||+|
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2346789999999888888999999988643111 1222334456788999999987666654 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l 208 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFM 208 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999877999999999996 678899998753
No 48
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=7e-44 Score=331.04 Aligned_cols=200 Identities=26% Similarity=0.386 Sum_probs=168.1
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT--SGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECCc
Confidence 5678887662 356999999999999999999999999999999999988764 6999999987532
Q ss_pred h-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 260 E-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 260 ~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
. ..++.++|++|++.+++..|++||+.+....+. ....+..+.++++++.+++.+..+..+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 1 224579999998888888999999988654321 222334456788999999987666664 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~ 203 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAV 203 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEE
Confidence 99999999999999999999999999999999999999764 899999999986 67888999875
No 49
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-43 Score=335.72 Aligned_cols=205 Identities=28% Similarity=0.386 Sum_probs=170.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD--SGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEC
Confidence 378889988763 356999999999999999999999999999999999988764 69999999875
Q ss_pred chh-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQE-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
... ..++.++|++|++.+++.+||+||+.++...+.. ......+..+.++++++.+++.+..++.+ .+||+||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 321 2245799999988888889999999987543211 00112233456788999999987666654 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~ 209 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVV 209 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999764 899999999996 67888999875
No 50
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=7e-44 Score=330.00 Aligned_cols=196 Identities=28% Similarity=0.409 Sum_probs=167.0
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD--SGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCCcccc
Confidence 5677877652 357999999999999999999999999999999999988764 6999999987532
Q ss_pred -hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 260 -ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 260 -~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
...++.++|++|++.+++.+|++||+.+....+. . ..+.++++++.+++.+..++.. ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHH
Confidence 2345679999998888889999999988754321 1 1345788899999987766654 3699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++.
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~ 198 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGI 198 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEE
Confidence 99999999999999999999999999999999999998877999999999997 67788998875
No 51
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.1e-43 Score=355.55 Aligned_cols=203 Identities=24% Similarity=0.342 Sum_probs=176.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~--~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD--SGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEEC
Confidence 489999999773 356999999999999999999999999999999999998874 59999999876
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.. ...++.+|||+|+..++|.+||+||+.|+...+. ....+..+.++++++.++|.+..++.. .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 42 2245779999999999999999999999864332 233444567889999999998887764 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||+++ +++.++|+++++
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl 218 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVM 218 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999764 999999999996 789999998753
No 52
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=9e-44 Score=334.53 Aligned_cols=200 Identities=27% Similarity=0.382 Sum_probs=168.6
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRY-------------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD--SGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEe-------------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEeccc
Confidence 567777765 2456999999999999999999999999999999999998764 5999999987532
Q ss_pred ---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 260 ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 260 ---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. .++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ ..||+||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 12 23568999999888888999999998643322 122334456788999999987766654 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~ 205 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYI 205 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999877999999999997 78889999875
No 53
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-43 Score=354.49 Aligned_cols=203 Identities=25% Similarity=0.376 Sum_probs=176.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. +..+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT--AGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEEC
Confidence 589999998762 356999999999999999999999999999999999998874 59999999875
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.. ...++.+|||+|+..++|.+||+||+.|+...+. ....+..+++.++++.+++.+..++.. .+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK---LPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 32 2356789999999999999999999999864332 233445667899999999988777764 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|++|||++ +++.++|+++++
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl 223 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIM 223 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999865 4999999999997 789999998753
No 54
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.1e-44 Score=375.34 Aligned_cols=195 Identities=27% Similarity=0.369 Sum_probs=157.9
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. ++++|+|+|+++++||.+||+||||||||||+|+|+|+++|. +|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~--~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL--QGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEE
Confidence 35999999998842 235999999999999999999999999999999999998875 5999999987
Q ss_pred Cc--hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 257 KV--QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 257 ~~--~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
+. ...+++.++||+|++.+ ++.|++|||.++.....++++.++.+...+++.++ .+++..|+.+|+.|. .||||
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~l-F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~--~lp~GldT~ige~G~-~LSGG 474 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHL-FDTTVRDNLRLGRPDATDEELWAALERVGLADWLR--SLPDGLDTVLGEGGA-RLSGG 474 (529)
T ss_pred hhhHHHHHHhheEEEccCccc-ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHH--hCcccccchhccccC-cCCHH
Confidence 43 45678899999997665 56799999998632111111111112222333333 356678999998765 59999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
||||++|||||+++|++||||||||+||+++++.|++.|+++. +++|+|++||++
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999864 589999999985
No 55
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=352.31 Aligned_cols=205 Identities=24% Similarity=0.301 Sum_probs=173.3
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. .+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~--~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT--SGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEECC
Confidence 6788999877310 11357999999999999999999999999999999999998764 699999998753
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ...++.+||++|+..+++.+||+||+.+....+. ....+..+.+.++++.+++.+..++.. .+||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 1235779999999888888999999998754332 223344567889999999987777664 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~ 213 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAV 213 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999764 899999999997 68889999875
No 56
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=6.7e-44 Score=348.71 Aligned_cols=191 Identities=29% Similarity=0.413 Sum_probs=166.2
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch--hhhcceeEEeecCCCCCCCC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ--ETFARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~g~v~Q~~~~~~~~ 279 (404)
+++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+... ...++.+||++|++.+++.+
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT--SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 3467999999999999999999999999999999999998764 6999999987532 23466799999998889999
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
||+||+.+.+..+. ....+..+.++++++.+++.+..++.++ .||||||||++|||||+.+|++|||||||+
T Consensus 82 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999998765432 2223345568899999999887777653 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||+.++..+++.|++++++|+|||++||+++ ++...||+++.
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~ 196 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAI 196 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 99999999999999999877999999999997 78889999875
No 57
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-44 Score=336.25 Aligned_cols=205 Identities=27% Similarity=0.330 Sum_probs=167.4
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++||++.|. +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYP------------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecC------------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--CceEEECCEeccc
Confidence 5677777652 1156999999999999999999999999999999999988764 6999999987532
Q ss_pred ------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhc-----CccCChhhHHHHHHHHHHHcCCCCCccccccCCCC
Q 015591 260 ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL-----APEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328 (404)
Q Consensus 260 ------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~ 328 (404)
...++.++|++|++.+++.+||+||+.+...... ..........+.+.++++.+++.+..++..
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA----- 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----
Confidence 2345679999998888888999999987542110 000111233456788899999977666653
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++++
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l 218 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGL 218 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 479999999999999999999999999999999999999999999999764 899999999997 678899998753
No 58
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=355.28 Aligned_cols=203 Identities=26% Similarity=0.386 Sum_probs=174.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|. +|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~--~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT--SGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEEC
Confidence 378889988762 356999999999999999999999999999999999998764 59999999875
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.. ...++.++||+|+..+++.+||+||+.|+...+. ....+..+.++++++.+++.+..++.. .+||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 32 1234679999999889999999999999764332 223344567889999999988777764 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|+++++
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl 207 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVL 207 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999998765 899999999997 788999998753
No 59
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-44 Score=328.94 Aligned_cols=205 Identities=24% Similarity=0.333 Sum_probs=170.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+... ...++|+||||++.+||+++|+|+||||||||.++|+|+..+. +|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~--~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS--SGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC--CceEEECCccc
Confidence 478899998875321 1125999999999999999999999999999999999998874 59999999765
Q ss_pred ch----hhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCC
Q 015591 258 VQ----ETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~ 330 (404)
.. ..+.+.+.+|||++ .+.|..||++.|.-+.... ..++. .+++.++++.+||..- +++. +++
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKS--QQRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccHH--HHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 43 24677899999986 4678999999998765432 22222 3338899999999753 3333 468
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||||++|||||+.+|++||||||||+||...+.+|+++|.+++++ |.|.|+||||.+ .+..+|||+.++
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm 215 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVM 215 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeee
Confidence 9999999999999999999999999999999999999999999999864 899999999997 689999998764
No 60
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.2e-44 Score=329.80 Aligned_cols=190 Identities=29% Similarity=0.406 Sum_probs=160.1
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCC-CCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDI-HSPQI 279 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~-~~~~~ 279 (404)
+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.. ...++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT--SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 56999999999999999999999999999999999988764 6999999986532 334677999999864 46778
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
|++||+.+...... .......+.++++++.+++.+..++.. ..||||||||++|||||+.+|++|||||||+
T Consensus 92 t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENLG---LPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999988653321 122233456788999999977666653 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+.++..+.+.|++++++|+|||++||+++ ++...+|+++.+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l 207 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVL 207 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99999999999999999877999999999987 677889998753
No 61
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=9.2e-44 Score=330.39 Aligned_cols=192 Identities=29% Similarity=0.431 Sum_probs=159.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCC--CCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS--PQIT 280 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~--~~~T 280 (404)
++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++. ..++.++|++|++.+. +.+|
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT--SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 356999999999999999999999999999999999988764 699999998653 3566799999987653 4489
Q ss_pred HHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 281 VEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 281 v~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
++||+.+....... .........+.++++++.+++.+..++.+ ..||||||||++|||||+.+|++|||||||+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~ 161 (213)
T cd03235 87 VRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFA 161 (213)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99999886432110 00112233456788999999976666654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.+
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l 205 (213)
T cd03235 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLL 205 (213)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 99999999999999999777999999999997 678889998753
No 62
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-43 Score=332.98 Aligned_cols=205 Identities=26% Similarity=0.321 Sum_probs=170.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT--SGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcc
Confidence 5778888876310 00126999999999999999999999999999999999998764 599999998753
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ...++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.. ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 2 1235679999999888888999999988654332 222334556789999999987766654 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~ 213 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAV 213 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 67888999875
No 63
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-43 Score=341.86 Aligned_cols=197 Identities=24% Similarity=0.288 Sum_probs=165.8
Q ss_pred ccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hh----hcceeEE
Q 015591 196 ERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ET----FARVSGY 268 (404)
Q Consensus 196 ~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~----~~~~~g~ 268 (404)
++.+.++++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.. .. .++.++|
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~--~G~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT--SGKVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEccccChhhhhhhhcCcEEE
Confidence 4444556678999999999999999999999999999999999998764 5999999987532 11 1357999
Q ss_pred eecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcC
Q 015591 269 CEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVAN 348 (404)
Q Consensus 269 v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~ 348 (404)
++|++.+++.+|++||+.+...... .......+.++++++.+++.+..++.+ .+||+|||||++|||||+.+
T Consensus 107 v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 107 VFQSFALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EecCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcC
Confidence 9999888888999999998754321 122334456788999999987777764 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 349 PSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 349 p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~ 233 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAI 233 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 9999999999999999999999999998754 899999999987 67889999875
No 64
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.7e-43 Score=375.11 Aligned_cols=205 Identities=27% Similarity=0.366 Sum_probs=167.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|.+. +++++|+|+||+++|||.+||+||||||||||+++|+|++ |. +|+|.+||.++
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~--~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY--QGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC--CcEEEECCEec
Confidence 599999997652 2356999999999999999999999999999999999998 63 69999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...+|+.++||+|++.+ ++.|++|||.++.....++++..+.+...+++.++ .+++..|+.+|+.|. .||||
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~L-F~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~--~lp~G~dT~vge~G~-~LSGG 489 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQL-PHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLP--LLPQGLDTPIGDQAA-GLSVG 489 (588)
T ss_pred ccCCHHHHHhheEEecCCCcC-CCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHH--hcccccccccccCCC-CCCHH
Confidence 3 45678899999997664 56799999999632111112222222333444554 466778999998865 59999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+++|+|||||||||+||+++++.|++.|+++. +++|+|++||+++ ..+.+|+++++
T Consensus 490 QrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl 556 (588)
T PRK11174 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVM 556 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999885 5899999999995 56789998763
No 65
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.2e-43 Score=329.91 Aligned_cols=212 Identities=33% Similarity=0.598 Sum_probs=172.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceeeEEEECCccC
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT-GSMEGEIKIGGYPK 257 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~-~~~~G~I~i~G~~~ 257 (404)
+.|+|+++.++.. ...+++|+|+||++++||+++|+||||||||||+++|+|+.++ .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 5688888876321 0136799999999999999999999999999999999998761 12469999999876
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHH-HHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNE-VLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.....++.++|++|++.+++.+|++||+.+................+.+++ .++.+++.+..++.+ ..||+|||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 544567789999999888888999999998754432221122222334455 788888876666553 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|++||++..++.+.+|+++.+
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999987779999999999966799999998753
No 66
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.6e-43 Score=330.52 Aligned_cols=199 Identities=27% Similarity=0.416 Sum_probs=164.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~ 66 (222)
T cd03224 2 EVENLNAGY-------------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR--SGSIRFDGRDITG 66 (222)
T ss_pred EEeeEEeec-------------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcCC
Confidence 567777755 2356999999999999999999999999999999999998764 5999999987532
Q ss_pred ---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-CCCCCccccccCCCCCCCCHH
Q 015591 260 ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-ELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 260 ---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~vg~~~~~~LSgG 334 (404)
.. .++.++|++|++.+++.+|++||+.+...... .....+.+.++++.+ ++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 136 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGG 136 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHH
Confidence 11 24569999999888888999999998754321 112234566777777 4665556553 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|+++.+
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 205 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVL 205 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEe
Confidence 999999999999999999999999999999999999999999777899999999986 678899998753
No 67
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.4e-43 Score=328.73 Aligned_cols=202 Identities=24% Similarity=0.287 Sum_probs=169.3
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS--AGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcc
Confidence 57788888762 1246999999999999999999999999999999999998764 699999998653
Q ss_pred h---h---hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q---E---TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~---~---~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. . .+++.++|++|++.+++.+|++||+.+....+. ....+..+.++++++.+++.+..++.. ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG---ASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 2 1 245679999998887889999999998654321 222333456788899999987666653 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|+++.
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 209 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLT 209 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999777899999999997 67788999875
No 68
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.6e-43 Score=334.15 Aligned_cols=202 Identities=25% Similarity=0.345 Sum_probs=170.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE--AGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEcc
Confidence 78889988762 356999999999999999999999999999999999988764 599999998653
Q ss_pred h-----------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 259 Q-----------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 259 ~-----------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
. ...++.++|++|++.+++..|++||+.++..... ........+.+.++++.+++.+..++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP---- 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh----
Confidence 1 2345679999998888888999999988542211 1122334456788999999987666653
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 143 -~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~ 216 (250)
T PRK11264 143 -RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIF 216 (250)
T ss_pred -hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 479999999999999999999999999999999999999999999999877999999999997 68888999875
No 69
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2e-43 Score=331.22 Aligned_cols=201 Identities=27% Similarity=0.322 Sum_probs=165.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC-----CCCceeeEEEECC
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK-----TTGSMEGEIKIGG 254 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~-----~~~~~~G~I~i~G 254 (404)
+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~--~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYY-------------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP--DEGEVLLDG 66 (227)
T ss_pred EEEEEEEEc-------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC--CCeEEEECC
Confidence 567777765 2356999999999999999999999999999999999987 55 469999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
.++.. ..+++.++|++|++.++ .+||+||+.+....+.. ....+..+.++++++.+++.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87532 23466799999987766 79999999987543311 1112234567889999999766555420 24
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+.+|++++
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~ 212 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAF 212 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEE
Confidence 79999999999999999999999999999999999999999999999876 99999999997 67889999875
No 70
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=9.8e-44 Score=375.46 Aligned_cols=207 Identities=30% Similarity=0.428 Sum_probs=174.7
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|.|+. ++++|+|+||++++||.+||+||||||||||+++|+|++++. +|+|++||++
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~--~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT--SGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CCeEEECCEe
Confidence 45999999998852 467999999999999999999999999999999999998874 5999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+|+.++||+|+..+ ++.||+||+.++......+++.++.+.+.+++.++. +++..|+.+|+.|. .|||
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~L-F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~--lp~g~dt~vge~G~-~LSg 468 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLL-FSGTIRENIALGRPDATDEEIEEALKLANAHEFIAN--LPDGYDTIVGERGV-NLSG 468 (567)
T ss_pred hhhcCHHHHHHhccEEccccee-ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh--CcccccceecCCCc-cCCH
Confidence 53 46788999999996555 558999999998543223344444555556777774 57789999997765 5999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++||||++++|++|+||||||+||++++..|.+.++++. +|+|+|+|+|+++. + ..+|+++++
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl 536 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVL 536 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEE
Confidence 99999999999999999999999999999999999999999887 67999999999963 4 449999864
No 71
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.4e-43 Score=329.03 Aligned_cols=202 Identities=27% Similarity=0.415 Sum_probs=168.4
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+. +++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT--SGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEecc
Confidence 356788876621 1156999999999999999999999999999999999998764 699999998753
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ..+++.++|++|+..+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ ..||+|||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 2 3345679999998888889999999998654332 122233456788999999987766654 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++.
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~ 204 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAI 204 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEE
Confidence 999999999999999999999999999999999999999875 699999999997 57788999875
No 72
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.7e-43 Score=334.90 Aligned_cols=205 Identities=24% Similarity=0.302 Sum_probs=167.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|. .++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS--SGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ccEEEECCEEhh
Confidence 56788887652 1356999999999999999999999999999999999998764 699999998753
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhc-----CccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL-----APEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
. ..+++.++|++|+..+++.+||+||+.++..... ..........+.+.++++.+++.+..++..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---- 143 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 2 1246679999999888888999999987532100 000112233456788999999977666653
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||+++.
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~ 218 (243)
T TIGR02315 144 -DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVG 218 (243)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEE
Confidence 479999999999999999999999999999999999999999999998754 899999999997 57788999875
No 73
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.5e-43 Score=331.69 Aligned_cols=202 Identities=20% Similarity=0.334 Sum_probs=169.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT--SGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECC
Confidence 56788888662 356999999999999999999999999999999999988764 699999998754
Q ss_pred h-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 259 Q-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 259 ~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
. ...++.++|++|++.+++.+||+||+.+...... ........+.+.++++.+++.+..++.. ..||+
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 2345679999998888888999999988642111 1223334456789999999987666653 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 208 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIF 208 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999877999999999997 67788999875
No 74
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.2e-43 Score=354.53 Aligned_cols=206 Identities=26% Similarity=0.337 Sum_probs=175.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|.++
T Consensus 3 ~L~~~nls~~y-------------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~--sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEF-------------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC--CcEEEECCEEc
Confidence 37888998876 3467999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc-cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ..+++.+|||+|+..+++.+||+||+.++...+... ........+.++++++.+++.+..++.+ .+|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 32 345678999999988889999999999864322110 0012334567899999999988888765 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++.+++++|++++++|+|||+++|+++ ++.+.||+++++
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l 212 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLL 212 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999997 788999998753
No 75
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.1e-43 Score=343.00 Aligned_cols=201 Identities=24% Similarity=0.378 Sum_probs=173.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+..
T Consensus 3 l~~~~l~~~~-------------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~--~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLY-------------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD--SGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEE-------------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcc
Confidence 7788888876 2466999999999999999999999999999999999998764 699999998753
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ...++.+||++|++.+++.+|+.||+.+.+.++. ....+..+.++++++.+++.+..++.++ .||+|||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHH
Confidence 2 2356779999999888899999999998765432 2223345568899999999988777754 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||+++.+
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l 205 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIII 205 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999864 799999999997 789999998753
No 76
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-43 Score=334.17 Aligned_cols=199 Identities=27% Similarity=0.361 Sum_probs=168.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ--HGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECC
Confidence 57788888662 356999999999999999999999999999999999998764 599999998754
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
. ..+.++|++|++.+++..||+||+.+....+. ....+..+.+.++++.+++.+..++.. ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 2 23458999999888888999999988653321 223334566889999999987666553 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++...+|+++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~ 201 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVL 201 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999854 5899999999997 68889999875
No 77
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=6e-43 Score=326.57 Aligned_cols=204 Identities=26% Similarity=0.368 Sum_probs=166.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT--SGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEhh
Confidence 5678888876310 01256999999999999999999999999999999999998764 699999998753
Q ss_pred h---h---hhc-ceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 259 Q---E---TFA-RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 259 ~---~---~~~-~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
. . .++ +.++|++|++.+++.+|++||+.+....+. ....+..+.+.++++.+++.+..++.. ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 2 1 122 569999998888888999999998654321 122233456788999999987666654 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|++++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~ 213 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLE 213 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEE
Confidence 999999999999999999999999999999999999999999999764 899999999987 44 45798865
No 78
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.6e-43 Score=328.54 Aligned_cols=207 Identities=25% Similarity=0.317 Sum_probs=164.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|... ....++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT--SGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcc
Confidence 5788888876310 00136999999999999999999999999999999999998764 599999998753
Q ss_pred h------hhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHH-HHHHHHHcCCC-CCccccccCCCC
Q 015591 259 Q------ETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEF-VNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
. ..+++.++|++|++ .+.+.+|++||+.+........ ......+. ++++++.+++. +..+..+
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 143 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNRYP----- 143 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhCCc-----
Confidence 2 23466899999987 4567899999998865432211 11111122 35788888885 4455543
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++.+
T Consensus 144 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l 219 (228)
T cd03257 144 HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVM 219 (228)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEE
Confidence 479999999999999999999999999999999999999999999999765 899999999997 677789998753
No 79
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6e-43 Score=322.99 Aligned_cols=190 Identities=25% Similarity=0.376 Sum_probs=161.4
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc---h----hhhcceeEEeecCCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV---Q----ETFARVSGYCEQTDIH 275 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~----~~~~~~~g~v~Q~~~~ 275 (404)
++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++. . ...++.++|++|++.+
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD--SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 457999999999999999999999999999999999998764 699999998732 1 1245679999998888
Q ss_pred CCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 015591 276 SPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 355 (404)
Q Consensus 276 ~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLD 355 (404)
++.+|++||+.+....+. .......+.++++++.+++.+..++.+ .+||+|||||++|||||+.+|++||||
T Consensus 88 ~~~~t~~e~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 88 IENETVEENLDLGLKYKK---LSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred ccCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 888999999998654321 122334566789999999987777664 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||+.++..+.+.|+++.++|+|+|++||+++ +.+.+|+++.+
T Consensus 160 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999999999999998767999999999986 34689998764
No 80
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.5e-43 Score=350.13 Aligned_cols=191 Identities=23% Similarity=0.282 Sum_probs=166.8
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhh----cceeEEeecCCC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETF----ARVSGYCEQTDI 274 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~----~~~~g~v~Q~~~ 274 (404)
+.+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.. ..+ ++.++||+|+..
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~--~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT--AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC--ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 4567999999999999999999999999999999999998874 6999999987542 223 578999999999
Q ss_pred CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 015591 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 354 (404)
Q Consensus 275 ~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlL 354 (404)
+++.+||+||+.|+..... ...++..+++.++++.++|.+..++.. ..||||||||++|||||+.+|++|||
T Consensus 82 l~~~~TV~eNi~~~~~~~~---~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLG---WPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999865432 234455677899999999987777664 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++||+.++..+.+.++++.++ |+|||++||+++ ++...+|++++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~v 202 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVI 202 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999754 999999999997 68899999875
No 81
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-43 Score=339.64 Aligned_cols=207 Identities=24% Similarity=0.344 Sum_probs=170.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. ....+.+|+||||++++||++||+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEG--------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT--SGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--ccEEEECCEECC
Confidence 7889999987421 001246999999999999999999999999999999999998764 699999998754
Q ss_pred h-----hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC--CCccccccCCCCCC
Q 015591 259 Q-----ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD--GIKDSLVGIPGVNG 330 (404)
Q Consensus 259 ~-----~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~vg~~~~~~ 330 (404)
. ...++.+|||+|++. .++..||+||+.|+.... ....++..+.++++++.++|. +..++.. ..
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----cc
Confidence 2 245678999999853 445689999999865432 123444556788999999996 4556553 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...||+++++
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l 218 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVM 218 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 677889998753
No 82
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.6e-43 Score=379.94 Aligned_cols=204 Identities=25% Similarity=0.306 Sum_probs=165.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|.|+. .++++|+|+||++++||.+||+|+||||||||+|+|+|+++|. +|+|.+||+++
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCEEc
Confidence 5999999998842 2356999999999999999999999999999999999999874 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...+|+.+|||+|++.+ ++.|++||+.++.. ...+++..+.+...+++.++ .+++..|+.+|+.|. +||||
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~l-f~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~--~lp~G~dt~ige~G~-~LSGG 592 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRL-MSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIR--AMPMGMHTVISEGGG-TLSGG 592 (686)
T ss_pred CcCCHHHHHhccEEEccCCcc-CcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHH--hccccccccccCCCC-CCCHH
Confidence 3 45688999999997665 56799999998642 11111111111122233333 345567899998764 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+++|++||||||||+||+.+++++++.|+++ ++|+|++||+++ ..+.+|+++++
T Consensus 593 QrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl 657 (686)
T TIGR03797 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVL 657 (686)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEE
Confidence 999999999999999999999999999999999999999875 589999999985 46789998763
No 83
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-43 Score=324.89 Aligned_cols=198 Identities=33% Similarity=0.472 Sum_probs=166.9
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++++|+|+||++++| +++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~~~~~~-------------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRY-------------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS--SGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEE-------------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCCcccc
Confidence 567787765 2356999999999999 99999999999999999999988764 6999999987532
Q ss_pred --hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 260 --ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 260 --~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
...++.++|++|++.+++.+|++||+.+....+. ....+..+.++++++.+++.+..++.+ ..||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHH
Confidence 2346779999999888888999999998654432 122233456788999999987666654 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|+++.
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~ 201 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAV 201 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999975 699999999997 57788999875
No 84
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-44 Score=358.53 Aligned_cols=207 Identities=24% Similarity=0.376 Sum_probs=176.0
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
+..|+|+||+++|.+ ++++|+++||+|++||-+||+|+|||||||++|+|.++.. .+|+|++||+
T Consensus 349 ~~~I~F~dV~f~y~~------------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGP------------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeCC------------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 445999999999853 4569999999999999999999999999999999999877 3599999999
Q ss_pred cC---chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 256 PK---VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 256 ~~---~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
++ ..+.+|+.+||||| |.++++.||.+|+.++..-...+++.+..++...++.+. .+++.++|.+|+.|. .||
T Consensus 414 dik~~~~~SlR~~Ig~VPQ-d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~--~l~~GY~T~VGerG~-~LS 489 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQ-DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVIS--RLPDGYQTLVGERGL-MLS 489 (591)
T ss_pred eHhhhChHHhhhheeEeCC-cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHH--hccccchhhHhhccc-ccc
Confidence 85 34678999999999 666777899999999864433333333444445556665 467788999999986 499
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||+||||++++|+|+++|||||+||.+++..+++.+.+.. .|+|+|+|.|+.+ +...||+++++
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~--ll~~~DkI~~l 558 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLD--LLKDFDKIIVL 558 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecch--hHhcCCEEEEE
Confidence 999999999999999999999999999999999999999999844 6999999999985 68899999863
No 85
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-43 Score=331.10 Aligned_cols=200 Identities=27% Similarity=0.367 Sum_probs=168.0
Q ss_pred EEeceeEEeeccccccccccccCc-eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKK-LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
+++|+++.|+ + +.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 ~~~~l~~~~~-------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 66 (242)
T cd03295 2 EFENVTKRYG-------------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT--SGEIFIDGEDIR 66 (242)
T ss_pred EEEEEEEEeC-------------CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCeEcC
Confidence 5677777652 2 56999999999999999999999999999999999988764 699999998753
Q ss_pred h---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC--CccccccCCCCCCCCH
Q 015591 259 Q---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG--IKDSLVGIPGVNGLST 333 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~vg~~~~~~LSg 333 (404)
. ...++.++|++|++.+++.+|++||+.+....+. .......+.+.++++.+++.+ ..++.. .+||+
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~ 138 (242)
T cd03295 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRYP-----HELSG 138 (242)
T ss_pred cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCH
Confidence 2 2345679999999888888999999998654321 222334566889999999975 555543 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 139 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~ 208 (242)
T cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAI 208 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999996 67888999875
No 86
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=327.34 Aligned_cols=205 Identities=25% Similarity=0.340 Sum_probs=167.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+.. ...+++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT--SGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEc
Confidence 38899999977320 01146999999999999999999999999999999999988764 69999999875
Q ss_pred chh------hh-cceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 258 VQE------TF-ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~~------~~-~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
... .. ++.++|++|+..+++.+|++||+.+....+. ....+..+.+.++++.+++.+..++.. .+
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK---KKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 321 12 2569999998888888999999998654321 122334466889999999987766653 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.. +|+++.
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~ 217 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLE 217 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEE
Confidence 999999999999999999999999999999999999999999999875 5899999999996 3443 567653
No 87
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=9.3e-43 Score=335.25 Aligned_cols=203 Identities=22% Similarity=0.319 Sum_probs=170.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD--HGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEc
Confidence 488999998762 356999999999999999999999999999999999998764 69999999875
Q ss_pred ch------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 258 VQ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 258 ~~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
.. ...++.++|++|+..+++.+|++||+.+...... ........+.+.++++.+++.+..++.+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 32 1235679999998888888999999988643211 1122333456788899999987777664 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~ 216 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYI 216 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 68888999875
No 88
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-43 Score=329.70 Aligned_cols=203 Identities=25% Similarity=0.387 Sum_probs=170.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD--AGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEC
Confidence 377888888762 356999999999999999999999999999999999988764 59999999875
Q ss_pred ch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.++|++|++.+++.+|++||+.+....+. .....+....++++++.+++.+..+... ..|||
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 140 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSG 140 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCH
Confidence 32 1235679999999888888999999987643221 1122334566888999999877666553 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.+++++++|+|||++||+++ ++.+.+|+++.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~ 209 (241)
T PRK10895 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYI 209 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEE
Confidence 9999999999999999999999999999999999999999998877999999999986 68889999875
No 89
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-43 Score=336.03 Aligned_cols=204 Identities=26% Similarity=0.330 Sum_probs=170.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--ceEEEECCEEC
Confidence 378999998773 1245999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.++|++|++. .++..||+||+.|+.... ........+.+.++++.+++.+..++.. ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 32 234567999999753 456789999999864322 1223334456789999999987777664 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|+++++
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l 211 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVL 211 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999987 577899998753
No 90
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-43 Score=338.84 Aligned_cols=207 Identities=26% Similarity=0.343 Sum_probs=170.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. ....+++|+||||++++||+++|+||||||||||+++|+|+.++. +|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYK--------TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT--SGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCC--------CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEECc
Confidence 7899999988421 001245999999999999999999999999999999999998764 599999998753
Q ss_pred -------hhhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCC
Q 015591 259 -------QETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVN 329 (404)
Q Consensus 259 -------~~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~ 329 (404)
....++.+|||+|++. .++..||+||+.|+.... .....+..+.++++++.++|. +..++.+ .
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----F 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----c
Confidence 1245667999999752 344679999999875432 122333446788999999996 5556653 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|+++++
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l 219 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVM 219 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 79999999999999999999999999999999999999999999999764 999999999997 688899998753
No 91
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=5.3e-43 Score=377.93 Aligned_cols=208 Identities=25% Similarity=0.379 Sum_probs=168.3
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. +++++|+|+|+++++||.+||+|+||||||||+++|+|+++|. +|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT--EGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEE
Confidence 35999999998842 2356999999999999999999999999999999999999875 5999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+|+.++||+|++.+ ++.|++|||.++......+++..+.+...+++.++ .+++..|+.+|+.|. .|||
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~l-f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~--~lp~gl~T~i~e~G~-~LSg 604 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRL-FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVR--RHPDGLDMQIGERGR-SLSG 604 (694)
T ss_pred hhhCCHHHHHhccEEECCChhh-hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHH--hCcccccceecCCCC-CCCH
Confidence 53 35678899999997665 55799999998632111111111112222333444 356678999998765 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+++|++||||||||+||+++++.|++.|+++. +++|+|++||+++ ....+|+++++
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl 672 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVM 672 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999986 5899999999996 46889998763
No 92
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=340.02 Aligned_cols=207 Identities=22% Similarity=0.319 Sum_probs=170.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. ......+|+||||++++||++||+||||||||||+++|+|+.+|. +|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKK--------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD--TGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCC--------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEEeceecc
Confidence 7889999987421 001135999999999999999999999999999999999998774 599999986431
Q ss_pred ---------------------------hhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHH
Q 015591 259 ---------------------------QETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310 (404)
Q Consensus 259 ---------------------------~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l 310 (404)
....++.+|||+|++ ..++..||+||+.|+..... ....+..+++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMG---VSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcC---CCHHHHHHHHHHHH
Confidence 123467899999974 34566799999998754321 23344456788999
Q ss_pred HHcCCC-CCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 015591 311 ETIELD-GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ 389 (404)
Q Consensus 311 ~~l~l~-~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~ 389 (404)
+.++|. +..++.. ..||||||||++|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 5666653 4799999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHhccccccC
Q 015591 390 PSIDIFEAFDEVKQF 404 (404)
Q Consensus 390 ~~~~i~~~fd~~l~~ 404 (404)
++ ++.+.+|+++++
T Consensus 225 ~~-~~~~~adrv~vl 238 (305)
T PRK13651 225 LD-NVLEWTKRTIFF 238 (305)
T ss_pred HH-HHHHhCCEEEEE
Confidence 86 688899999763
No 93
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.4e-43 Score=310.11 Aligned_cols=184 Identities=28% Similarity=0.367 Sum_probs=161.5
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-hhhcceeEEeecCCCCCCCCCHHHHHHH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQITVEESVIF 287 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~ 287 (404)
..++.|+.||++||+||||||||||||+|+|+..|. +|+|++||++... ...+|-+++++|+.++|..+||.+|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~--~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC--CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 578899999999999999999999999999999875 5999999998543 3356778999999999999999999998
Q ss_pred HhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 015591 288 SAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367 (404)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~ 367 (404)
+..... .-.++.++.++.+...+|+.++.+++- .+||||||||+++||+|+++-+||+||||+|+|||.-+.
T Consensus 95 Gl~P~L---kL~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL---KLNAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc---ccCHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 753221 123456678999999999999888773 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 368 IIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 368 ~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++..++.++++ ++.|++++||+|+ ++..+.|+++.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~f 202 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVF 202 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEE
Confidence 99999999986 4999999999998 78888888764
No 94
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.4e-42 Score=330.10 Aligned_cols=204 Identities=22% Similarity=0.280 Sum_probs=170.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--EGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEEc
Confidence 388999998763 356999999999999999999999999999999999998764 59999999765
Q ss_pred ch----------------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCc-c
Q 015591 258 VQ----------------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK-D 320 (404)
Q Consensus 258 ~~----------------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~ 320 (404)
.. ..+++.++|++|++.+++.+|++||+.++..... ........+.+.++++.+++.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 21 2345679999999888888999999987542111 122334456778899999997653 4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccc
Q 015591 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 321 ~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~ 400 (404)
+. +..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++...||+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 44 2479999999999999999999999999999999999999999999999877999999999987 67778999
Q ss_pred cccC
Q 015591 401 VKQF 404 (404)
Q Consensus 401 ~l~~ 404 (404)
++.+
T Consensus 222 i~~l 225 (257)
T PRK10619 222 VIFL 225 (257)
T ss_pred EEEE
Confidence 8753
No 95
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-42 Score=336.72 Aligned_cols=207 Identities=27% Similarity=0.368 Sum_probs=170.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|++|.|+.. ....+.+|+||||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT--EGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC--CcEEEECCEECc
Confidence 6889999988421 001135999999999999999999999999999999999998764 599999998753
Q ss_pred -------hhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCC
Q 015591 259 -------QETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVN 329 (404)
Q Consensus 259 -------~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~ 329 (404)
...+++.+|||+|++ ..++..||.||+.|+..... ....+..+.+.++++.++|. +..++. +.
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFG---IPKEKAEKIAAEKLEMVGLADEFWEKS-----PF 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCChhhccCC-----cc
Confidence 123567899999975 24445799999998754321 23344556788999999995 455554 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l 217 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLL 217 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 79999999999999999999999999999999999999999999999877999999999996 677899998763
No 96
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2e-42 Score=328.70 Aligned_cols=202 Identities=25% Similarity=0.338 Sum_probs=167.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS---MEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~---~~G~I~i~G~ 255 (404)
++++||++.|+ ++.+++|+||++++||+++|+|+||||||||+++|+|+.+|.+ .+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 67888888763 3469999999999999999999999999999999999987631 1699999998
Q ss_pred cCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC----CCccccccCC
Q 015591 256 PKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----GIKDSLVGIP 326 (404)
Q Consensus 256 ~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~vg~~ 326 (404)
++.. ...++.++|++|+..+++ .|++||+.+....+. .....+..+.++++++.+++. +..++.
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7532 234667999999887777 999999998754331 112233445678899999997 444444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~ 215 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAF 215 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999876 599999999997 68889999875
No 97
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-42 Score=327.54 Aligned_cols=202 Identities=25% Similarity=0.359 Sum_probs=169.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEec
Confidence 377888888763 356999999999999999999999999999999999998764 59999999864
Q ss_pred c---------hhhhcceeEEeecCCCCCCCCCHHHHHHHHh-hhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 258 V---------QETFARVSGYCEQTDIHSPQITVEESVIFSA-WLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 258 ~---------~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
. ....++.++|++|++.+++.+|++||+.+.. ... .....+..+.+.++++.+++.+..++..
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 2 1234567999999988888899999997532 111 1122233456788999999987667654
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++.
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~ 213 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVY 213 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 479999999999999999999999999999999999999999999999767999999999997 67788998865
No 98
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-43 Score=384.85 Aligned_cols=211 Identities=28% Similarity=0.392 Sum_probs=180.1
Q ss_pred CCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 175 EPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
....++|+||+|+|+.. .+.++|+|+||.|++|+.+||||||||||||++++|.+++.|. +|+|++||
T Consensus 347 ~~g~ief~nV~FsYPsR----------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~--~G~V~idG 414 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSR----------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT--SGEVLIDG 414 (1228)
T ss_pred cccceEEEEEEecCCCC----------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--CceEEEcC
Confidence 34579999999999753 3457999999999999999999999999999999999999875 59999999
Q ss_pred ccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 255 YPKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 255 ~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
.++. ...+|..+|.|+|+|. ++..|++||+.|+.......++.++.+.+.+.+++. .+++..|+.+|+.|+. |
T Consensus 415 ~di~~~~~~~lr~~iglV~QePv-lF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~--~lp~g~~T~vge~g~q-L 490 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPV-LFATTIRENIRYGKPDATREEIEEAAKAANAHDFIL--KLPDGYDTLVGERGVQ-L 490 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechh-hhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHH--hhHHhhcccccCCCCC-C
Confidence 9854 3567889999999885 567899999999864433334444555556677776 5788899999999874 9
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||++|||||+++|+|||||||||+||+++++.|+++|+++. .|+|.|+++|++| .|-+ .|+++++
T Consensus 491 SGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tIrn-aD~I~v~ 560 (1228)
T KOG0055|consen 491 SGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TIRN-ADKIAVM 560 (1228)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hhhc-cCEEEEE
Confidence 9999999999999999999999999999999999999999999876 6999999999998 4554 8888753
No 99
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=5.7e-43 Score=370.65 Aligned_cols=201 Identities=24% Similarity=0.352 Sum_probs=166.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|.|+. +++++|+|+|+++++||.+||+|+||||||||+++|+|+++|. +|+|.+||.++
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~--~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID--EGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC--CceEEECCEEh
Confidence 5999999998742 2356999999999999999999999999999999999998874 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~~ 327 (404)
. ...+++.++||+|++.++ +.|++|||.++.. +..+. +.++++++.. .+++..|+.+|+.|
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf-~~Ti~~Ni~~~~~----~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g 478 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLF-NDTIANNIAYART----EQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGENG 478 (582)
T ss_pred hhcCHHHHHhhceEEccCceee-cchHHHHHhcCCC----CCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCCC
Confidence 3 356788899999976654 5799999998531 11111 2233333333 35667899999876
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||||||||++|||||+++|++|+||||||+||+.++..+++.|+++. +++|+|+|||+++ ..+.||+++.+
T Consensus 479 -~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l 551 (582)
T PRK11176 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVV 551 (582)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999875 5799999999995 57889998763
No 100
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=336.25 Aligned_cols=205 Identities=24% Similarity=0.340 Sum_probs=171.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+.. +.+.+|+|+||+|++||++||+|+||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE--SGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 38899999987420 1245999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.++|++|++ ..++..||+||+.|+.... ....++..+.++++++.+++.+..++.. ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 32 34567799999986 3677889999999875432 2233444567889999999987777664 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|+++++
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l 213 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVM 213 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999987 45 579998753
No 101
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-42 Score=328.29 Aligned_cols=204 Identities=28% Similarity=0.299 Sum_probs=168.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~ 255 (404)
++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 78888888762 356999999999999999999999999999999999987642 35799999998
Q ss_pred cCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccCCCC
Q 015591 256 PKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGIPGV 328 (404)
Q Consensus 256 ~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~~~~ 328 (404)
++. ...+++.++|++|++.+++.+|++||+.++...+.. .....+..+.+.++++.+++.+ ..++. +
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----A 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----c
Confidence 753 234567899999988888899999999986533211 0122333456788999998854 23443 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|+|++||+++ ++.+.+|+++.
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~i~~ 217 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQ-QAARISDYVAF 217 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 4799999999999999999999999999999999999999999999986 4899999999997 67889999875
No 102
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.8e-42 Score=325.56 Aligned_cols=200 Identities=27% Similarity=0.400 Sum_probs=166.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCEEcc
Confidence 56788887662 356999999999999999999999999999999999998764 699999998653
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ...++.++|++|++.+++.+|++||+.+....+. .......+.+.++++.+++.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG---LSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 1223578999998887789999999988654321 222333456788999999987766654 36999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|+|++||+++ ++. .+|++++
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~ 204 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVV 204 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEE
Confidence 999999999999999999999999999999999999999975 5899999999997 344 5999875
No 103
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-42 Score=335.85 Aligned_cols=208 Identities=24% Similarity=0.326 Sum_probs=170.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|... ....+.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|+++
T Consensus 2 ~i~~~~l~~~~~~~--------~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPG--------TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS--SGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCC--------CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 37889999877310 000146999999999999999999999999999999999998874 69999999875
Q ss_pred ch-------hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCC
Q 015591 258 VQ-------ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 258 ~~-------~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
.. ...++.++|++|++. .++.+|++||+.|+...+. ...++..++++++++.+++. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFG---FSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 31 234567999999852 3446899999988653321 22334456788999999996 5666654
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|+++++
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l 218 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVL 218 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 479999999999999999999999999999999999999999999999767999999999997 688899998753
No 104
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-42 Score=330.88 Aligned_cols=194 Identities=23% Similarity=0.294 Sum_probs=166.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~--~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS--AGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEH
Confidence 489999999773 356999999999999999999999999999999999998764 69999999764
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ..++.++|++|++.+++.+||+||+.+... . ...+.+.++++.+++.+..++.. ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK----G-----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc----c-----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 2 346679999999888888999999987521 0 12345788899999987666653 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|+++.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~ 206 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLL 206 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999865 4899999999997 57788999875
No 105
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.5e-42 Score=320.40 Aligned_cols=200 Identities=24% Similarity=0.313 Sum_probs=170.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+.++|+++.|+ ++.+++++||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|+++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--CeeEEECCEEc
Confidence 488999998762 346999999999999999999999999999999999998764 59999999876
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
.....++.++|++|++.+++.+|++||+.+....+. ....+.++++++.+++.+..++.+ ..||+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG------RRAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC------CcHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 433345568999998888888899999988653321 112345678889999987777764 369999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|++|||+++.+|++|||||||++||+.+++.+.+.|++++++|+|+|++||+++ ++.+.+|+++.+
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l 210 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTL 210 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEE
Confidence 999999999999999999999999999999999999998878999999999997 788999998753
No 106
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.4e-43 Score=379.77 Aligned_cols=210 Identities=25% Similarity=0.377 Sum_probs=182.7
Q ss_pred CCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 175 EPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
-...++++||+|.|+.. .+.++|+|+|+++++|+.+||||||||||||.+.+|-++++|. +|.|.+||
T Consensus 984 ~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~--~G~V~IDg 1051 (1228)
T KOG0055|consen 984 VKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD--AGKVKIDG 1051 (1228)
T ss_pred ceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC--CCeEEECC
Confidence 44579999999999753 4577999999999999999999999999999999999998874 59999999
Q ss_pred ccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 255 YPKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 255 ~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
+++. ...+|+.+|.|.|+|.+ ++.|++|||.|+..-....++.++.+.+.+++++. .|++.+||.+|+.|. +|
T Consensus 1052 ~dik~lnl~~LR~~i~lVsQEP~L-F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGerG~-QL 1127 (1228)
T KOG0055|consen 1052 VDIKDLNLKWLRKQIGLVSQEPVL-FNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGERGV-QL 1127 (1228)
T ss_pred cccccCCHHHHHHhcceeccCchh-hcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHh--cCcCcccCccCcccC-cC
Confidence 9854 45688999999998875 56799999999922112234555667778888887 799999999999987 59
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||++||||+++||+||||||+||+||+++++.|+++|++.. .|+|.|+|+|++|. ...+|.+.+
T Consensus 1128 SGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~V 1196 (1228)
T KOG0055|consen 1128 SGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAV 1196 (1228)
T ss_pred CchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEE
Confidence 9999999999999999999999999999999999999999999976 69999999999984 778887765
No 107
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3e-42 Score=326.27 Aligned_cols=206 Identities=20% Similarity=0.260 Sum_probs=164.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+..+.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 5678887662 356999999999999999999999999999999999984211356999999987532
Q ss_pred ---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC--c--cCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCC
Q 015591 260 ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLA--P--EINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNG 330 (404)
Q Consensus 260 ---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~--~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~ 330 (404)
.. .+..++|++|++.+++.+|++||+.+....... . .....+..+.+.++++.+++. +..++.++ ..
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 12 233489999998888999999999886432211 0 011222345678899999997 34555432 24
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHh-cccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEA-FDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~-fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++... +|++++
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~ 217 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHV 217 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEE
Confidence 9999999999999999999999999999999999999999999999877999999999997 56666 798875
No 108
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=8e-43 Score=377.36 Aligned_cols=206 Identities=21% Similarity=0.322 Sum_probs=166.1
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. ++++|+|+|+++++||.+||+|+||||||||+++|+|+++|. +|+|++||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~--~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC--CcEEEECCEE
Confidence 35999999998841 246999999999999999999999999999999999998874 5999999987
Q ss_pred C---chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhh-hcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 257 K---VQETFARVSGYCEQTDIHSPQITVEESVIFSAWL-RLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 257 ~---~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
+ +...+|+.+|||+|++.+ ++.|++|||.++... ...+++.++.+...+++.++ .+++..|+.+|+.|. +||
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~l-f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~--~lp~gldt~i~e~G~-~LS 613 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYI-FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIE--NMPLGYQTELSEEGS-SIS 613 (708)
T ss_pred HHHcCHHHHHHheEEEecCcee-hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHH--hcccccCcEecCCCC-CCC
Confidence 5 345678899999997665 567999999986311 00011111112222334443 355677999998764 699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||++|||||+++|++||||||||+||+++++.+++.|+++ +|+|+|++||+++ ....+|+++++
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l 681 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVL 681 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEE
Confidence 99999999999999999999999999999999999999999885 4899999999996 46789998763
No 109
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=9.4e-43 Score=376.95 Aligned_cols=206 Identities=28% Similarity=0.370 Sum_probs=164.9
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. .++++|+|+|+++++||.+||+|+||||||||+++|+|+++|. +|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW--SGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEe
Confidence 36999999998852 2356999999999999999999999999999999999998874 5999999988
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+|+.++||+|++.+ ++.|++|||.++.......++.++.+...+++.++ .+++..|+.+|+.|. +|||
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~l-f~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~--~lp~gl~t~i~e~G~-~LSG 618 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFL-FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVIT--SRPGGYDAELAEGGA-NLSG 618 (710)
T ss_pred HHHCCHHHHHhheeEEecCChh-hhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHH--hCcCcccceeccCCC-CCCH
Confidence 53 35678999999997665 56799999987531110011111111122233333 355677899998764 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+++|++||||||||+||+.++++|++.|++ .++|+|++||+++ ....+|+++++
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl 684 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVL 684 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEE
Confidence 999999999999999999999999999999999999999985 4899999999986 46679998763
No 110
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.6e-42 Score=368.05 Aligned_cols=199 Identities=26% Similarity=0.331 Sum_probs=166.5
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|++|.|+. ++++|+|+|+++++||.+||+|+||||||||+++|+|+++|. +|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT--EGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CceEEECCEE
Confidence 35999999998841 245999999999999999999999999999999999999875 5999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-------CCCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~ 326 (404)
+. ...+++.++||+|++.+++ .|++|||.++.. .+ ++.++++++.++ +++..|+.+|+.
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~~------~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGRD------IS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCcccc-chHHHHHHhCCC------CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 53 4577899999999777654 699999998631 11 122344444444 556678999886
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|. .||||||||++|||||+++|++|+||||||+||+++++.|.+.|+++. .++|+|++||+++ ....||+++++
T Consensus 474 g~-~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~--~l~~~D~ii~l 547 (592)
T PRK10790 474 GN-NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLS--TIVEADTILVL 547 (592)
T ss_pred CC-CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEE
Confidence 54 699999999999999999999999999999999999999999999986 4799999999985 57789998753
No 111
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=339.74 Aligned_cols=208 Identities=23% Similarity=0.342 Sum_probs=169.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+.. ....+.+|+||||++++||++||+|+||||||||+++|+|+.++. +|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~--~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK--YGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCEEc
Confidence 48999999988421 001245999999999999999999999999999999999998874 59999999764
Q ss_pred ch-------------------hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-
Q 015591 258 VQ-------------------ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD- 316 (404)
Q Consensus 258 ~~-------------------~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~- 316 (404)
.. ..+++.++||+|++. .++..||+||+.|+.... .....+..++++++++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~ 167 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDD 167 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCCh
Confidence 21 235678999999852 344569999998875322 122334456788899999996
Q ss_pred CCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHH
Q 015591 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFE 396 (404)
Q Consensus 317 ~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~ 396 (404)
+..++. +.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+
T Consensus 168 ~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~ 241 (320)
T PRK13631 168 SYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLE 241 (320)
T ss_pred hHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHH
Confidence 455544 3479999999999999999999999999999999999999999999998777999999999987 5778
Q ss_pred hccccccC
Q 015591 397 AFDEVKQF 404 (404)
Q Consensus 397 ~fd~~l~~ 404 (404)
.+|+++++
T Consensus 242 ~adri~vl 249 (320)
T PRK13631 242 VADEVIVM 249 (320)
T ss_pred hCCEEEEE
Confidence 99998753
No 112
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=335.10 Aligned_cols=208 Identities=23% Similarity=0.355 Sum_probs=170.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+.. ....+.+|+||||+|++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKG--------TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT--TGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCC--------CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 37899999988421 001246999999999999999999999999999999999998764 59999999875
Q ss_pred ch-------hhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCC
Q 015591 258 VQ-------ETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 258 ~~-------~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
.. ..+++.+|||+|++ ..++..||+||+.|+.... .....+..+.++++++.++|. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP----- 143 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----
Confidence 32 24567899999975 2344469999999875332 123334456788999999996 5556543
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|+++++
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l 219 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVM 219 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999999975 4999999999997 678899998763
No 113
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.5e-42 Score=339.30 Aligned_cols=218 Identities=21% Similarity=0.247 Sum_probs=173.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+.........+..+...+++||||+|++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~--~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT--DGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CcEEEECCEEC
Confidence 4899999998853100000000112356999999999999999999999999999999999998764 69999999875
Q ss_pred ch------hhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCC
Q 015591 258 VQ------ETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 258 ~~------~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
.. ..+++.++||+|++ .++|.+||.||+.+...... ......+..+.+.++++.+++. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 32 12456799999986 57788999999998654321 1123445566788999999994 344554 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
++||||||||++|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|+||||++ .+.+.+|+++++
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl 235 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVM 235 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 579999999999999999999999999999999999999999999999764 999999999997 677889998763
No 114
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.9e-42 Score=317.91 Aligned_cols=194 Identities=28% Similarity=0.322 Sum_probs=165.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.+...
T Consensus 2 ~i~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCER-------------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL--AGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEe-------------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEeccc
Confidence 567777765 2356999999999999999999999999999999999998764 5999999987432
Q ss_pred --hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 260 --ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 260 --~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
..+++.++|++|++.+++.+|++||+.+.... ...+.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRPV-----AQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCch-----hhCCHHHHH
Confidence 34567899999988888889999999885311 12345788899999987766654 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||++. ++...+|+++.
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~ 197 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELD 197 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEe
Confidence 999999999999999999999999999999999999998777999999999986 67778888764
No 115
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-42 Score=328.58 Aligned_cols=202 Identities=26% Similarity=0.322 Sum_probs=166.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 589999998762 356999999999999999999999999999999999987642 2579999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++.. ..+++.++|++|++.+++ +|++||+.+....+. .......+.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG---ANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87531 234667999999877766 899999998753321 222333456788899888742 23433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
...||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.+|++++
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~ 225 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGF 225 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999864 899999999987 67788999875
No 116
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-42 Score=329.39 Aligned_cols=202 Identities=26% Similarity=0.396 Sum_probs=169.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++|++++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~--~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD--SGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCEEcc
Confidence 67888888763 356999999999999999999999999999999999987764 699999998653
Q ss_pred h---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 259 Q---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
. ...++.++|++|++.+++.+|++||+.+...... .......+.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 2345679999998877788999999988643211 112233456788999999987667664 4799999
Q ss_pred HHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHhccccccC
Q 015591 336 RKRLTIAVELV------ANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 336 rqRl~IAraL~------~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||++|||||+ .+|++|||||||+|||+.++..+.+.|++++ ++|+|||++||+++ ++...+|+++++
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 214 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLL 214 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEE
Confidence 99999999999 5999999999999999999999999999987 56999999999987 678899998753
No 117
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.5e-42 Score=328.01 Aligned_cols=202 Identities=25% Similarity=0.319 Sum_probs=168.7
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID--EGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcc
Confidence 35778888662 356999999999999999999999999999999999988764 699999998652
Q ss_pred h----------------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcccc
Q 015591 259 Q----------------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322 (404)
Q Consensus 259 ~----------------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 322 (404)
. ...++.++|++|++.+++..|++||+.++..... ........+.+.++++.+++.+..++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 1 1346779999998888888999999988642111 122333445678899999998766655
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccc
Q 015591 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 323 vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~ 401 (404)
. ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++...+|++
T Consensus 144 ~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 P-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred h-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3 479999999999999999999999999999999999999999999998764 899999999997 678889998
Q ss_pred cc
Q 015591 402 KQ 403 (404)
Q Consensus 402 l~ 403 (404)
++
T Consensus 218 ~~ 219 (252)
T TIGR03005 218 CF 219 (252)
T ss_pred EE
Confidence 75
No 118
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-42 Score=328.31 Aligned_cols=205 Identities=21% Similarity=0.261 Sum_probs=169.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT--GGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC--cceEEECCEEC
Confidence 488999998762 357999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC----------ccC--ChhhHHHHHHHHHHHcCCCCCccc
Q 015591 258 VQ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLA----------PEI--NSKTKAEFVNEVLETIELDGIKDS 321 (404)
Q Consensus 258 ~~---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~----------~~~--~~~~~~~~~~~~l~~l~l~~~~~~ 321 (404)
.. .. .+..++|++|++.+++.+|++||+.++...... ... ...+..+.+.++++.+++.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 32 12 234588999998888999999999986431110 000 111233567888999999876666
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccc
Q 015591 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 322 ~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~ 400 (404)
.. ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 54 479999999999999999999999999999999999999999999999765 899999999997 68889999
Q ss_pred ccc
Q 015591 401 VKQ 403 (404)
Q Consensus 401 ~l~ 403 (404)
++.
T Consensus 224 i~~ 226 (255)
T PRK11300 224 IYV 226 (255)
T ss_pred EEE
Confidence 875
No 119
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.7e-42 Score=322.19 Aligned_cols=206 Identities=29% Similarity=0.396 Sum_probs=168.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+.. .....+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CeeEEECCEEc
Confidence 48899999877320 00135999999999999999999999999999999999998764 59999999875
Q ss_pred ch---hh---h-cceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 258 VQ---ET---F-ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~---~~---~-~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
.. .. . ++.++|++|++.+++.+|++||+.+....+. .......+.+.++++.+++.+..++.+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 32 11 1 3579999998888888999999988653321 122334567889999999987666653 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|+++.+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l 219 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRL 219 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998754 899999999997 45 559998753
No 120
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-43 Score=320.90 Aligned_cols=197 Identities=27% Similarity=0.382 Sum_probs=172.2
Q ss_pred ccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch----hhhcceeEEeecCCCC
Q 015591 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----ETFARVSGYCEQTDIH 275 (404)
Q Consensus 200 ~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~g~v~Q~~~~ 275 (404)
+++...+++||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. +..+..++..||...+
T Consensus 13 ~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~--~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl 90 (250)
T COG0411 13 RFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS--SGTVIFRGRDITGLPPHRIARLGIARTFQITRL 90 (250)
T ss_pred ecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC--CceEEECCcccCCCCHHHHHhccceeecccccc
Confidence 447788999999999999999999999999999999999999985 5999999998643 2345678889999999
Q ss_pred CCCCCHHHHHHHHhhhhc--------Ccc-CChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh
Q 015591 276 SPQITVEESVIFSAWLRL--------APE-INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV 346 (404)
Q Consensus 276 ~~~~Tv~e~l~~~~~~~~--------~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~ 346 (404)
|+.+||.||+..++..+. +.. ....+..+++.++++.++|.+.+|...+ +||+||||||.|||||+
T Consensus 91 F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa 165 (250)
T COG0411 91 FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALA 165 (250)
T ss_pred cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHh
Confidence 999999999998865331 111 1234556788999999999999999875 69999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 347 ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 347 ~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.+|++|+||||.+||.+.....+.+.|+++.++ |.||++|.||++ -++.+||++.++
T Consensus 166 ~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl 223 (250)
T COG0411 166 TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVL 223 (250)
T ss_pred cCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEec
Confidence 999999999999999999999999999999874 799999999998 699999999764
No 121
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-42 Score=326.38 Aligned_cols=201 Identities=21% Similarity=0.340 Sum_probs=165.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT--SGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CceEEECCEec
Confidence 488899998762 356999999999999999999999999999999999998764 59999999875
Q ss_pred ch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-CCCCCccccccCCCCCCCC
Q 015591 258 VQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-ELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~vg~~~~~~LS 332 (404)
.. ...++.++|++|+..+++..||+||+.++.... ......+.++++++.+ ++.+..+.. ...||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 32 124567999999988888899999998864221 1112233456667766 455444443 24799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 210 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVL 210 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 688999998753
No 122
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-42 Score=333.05 Aligned_cols=204 Identities=26% Similarity=0.352 Sum_probs=171.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~--~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS--SGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ccEEEECCEEC
Confidence 488999999773 1246999999999999999999999999999999999998764 69999999875
Q ss_pred c-----hhhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 258 V-----QETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 258 ~-----~~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
. ...+++.++|++|++. .++..|++||+.+..... .....+..+.++++++.+++.+..++.. ..|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 2 1245678999999763 345689999998865332 1223344567889999999987777764 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||+++++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l 215 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVM 215 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999765 999999999997 577789998763
No 123
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2e-42 Score=362.55 Aligned_cols=200 Identities=28% Similarity=0.428 Sum_probs=166.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|.|+. +++++|+|+|+++++||.+||+||||||||||+|+|+|+++|. +|+|.+||.++
T Consensus 320 ~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEeh
Confidence 5999999998842 2246999999999999999999999999999999999998875 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-------CCCCccccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDGIKDSLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~~ 327 (404)
. ...+++.++||+|++.++ +.|++||+.++... .+ ++.+.++++..+ +++..|+.+|+.|
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf-~~ti~~Ni~~~~~~-----~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g 456 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLF-AGTIAENIRLARPD-----AS----DAEIRRALERAGLDEFVAALPQGLDTLIGEGG 456 (529)
T ss_pred hhCCHHHHHhheEEEcCCCccc-CcCHHHHHhccCCC-----CC----HHHHHHHHHHcCcHHHHHhCcccccchhcccc
Confidence 3 356788999999977655 57999999986321 11 122333344333 4456788998866
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
. .||||||||++|||||+++|++|+||||||+||+.+++.+.+.++++. .++|+|++||+++ ....+|+++++
T Consensus 457 ~-~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 457 A-GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred c-cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 4 699999999999999999999999999999999999999999999875 6899999999985 46789999864
No 124
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.7e-42 Score=324.99 Aligned_cols=203 Identities=26% Similarity=0.346 Sum_probs=168.4
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD--EGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCeecC
Confidence 67888888662 356999999999999999999999999999999999988764 599999998653
Q ss_pred h---h-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC--c---cCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 259 Q---E-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA--P---EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 259 ~---~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
. . ..++.++|++|++.+++.+|++||+.+....... . ........+.++++++.+++.+..++.+ .
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 2 1 2345699999998888889999999986432110 0 0112233456889999999987766654 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||+++.
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~ 214 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTV 214 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEE
Confidence 6999999999999999999999999999999999999999999999875 799999999987 68889999875
No 125
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-42 Score=346.42 Aligned_cols=214 Identities=21% Similarity=0.259 Sum_probs=174.8
Q ss_pred EEEeceeEEeeccc-----------cccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcee
Q 015591 179 VAFQDLKYYIDTPL-----------EMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME 247 (404)
Q Consensus 179 i~~~~l~~~~~~~~-----------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~ 247 (404)
|+++||++.|.... ...++...++...+|+|+||++++||+++|+||||||||||+++|+|+.+|. +
T Consensus 5 i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~--s 82 (400)
T PRK10070 5 LEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT--R 82 (400)
T ss_pred EEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC--C
Confidence 66777776664321 1112223345566899999999999999999999999999999999998764 5
Q ss_pred eEEEECCccCch---hh----hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcc
Q 015591 248 GEIKIGGYPKVQ---ET----FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD 320 (404)
Q Consensus 248 G~I~i~G~~~~~---~~----~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 320 (404)
|+|.++|.++.. .. .++.++|++|+..+++.+||+||+.++...+. ....+..+.+.++++.++|.+..+
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~ 159 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAH 159 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhh
Confidence 999999987532 11 23579999999888999999999999764432 223344567889999999988777
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcc
Q 015591 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFD 399 (404)
Q Consensus 321 ~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd 399 (404)
+.. .+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|
T Consensus 160 ~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~D 233 (400)
T PRK10070 160 SYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGD 233 (400)
T ss_pred cCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCC
Confidence 664 47999999999999999999999999999999999999999999999875 4899999999997 6888999
Q ss_pred cccc
Q 015591 400 EVKQ 403 (404)
Q Consensus 400 ~~l~ 403 (404)
+++.
T Consensus 234 ri~v 237 (400)
T PRK10070 234 RIAI 237 (400)
T ss_pred EEEE
Confidence 9875
No 126
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-42 Score=328.15 Aligned_cols=204 Identities=28% Similarity=0.373 Sum_probs=169.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ--SGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--CcEEEECCEEhH
Confidence 67888888762 357999999999999999999999999999999999987764 699999998643
Q ss_pred h---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 259 Q---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...++.++|++|+..+++.+|+.||+.++...... .........+.++++++.+++.+..++.. ..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 23456799999988777888999999885321100 00111233456788899999987667654 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~ 210 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVV 210 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEE
Confidence 999999999999999999999999999999999999999998767999999999997 78899999875
No 127
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-42 Score=326.98 Aligned_cols=203 Identities=24% Similarity=0.302 Sum_probs=165.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 489999999763 346999999999999999999999999999999999987753 2469999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC----CCccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----GIKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~vg~ 325 (404)
.++.. ...++.++|++|++..+ .+||+||+.++...... .......+.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeeccccc-cCcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 23567799999987766 48999999987533211 11223345677888888873 233443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++ +++|||++||+++ ++.+.+|+++.
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~ 221 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAF 221 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 35799999999999999999999999999999999999999999999996 4799999999997 67788999875
No 128
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-42 Score=319.59 Aligned_cols=199 Identities=25% Similarity=0.364 Sum_probs=164.1
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
.++|+++.|+ ++. .|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~--~G~i~~~g~~~~~ 64 (211)
T cd03298 2 RLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTA 64 (211)
T ss_pred EEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcCc
Confidence 5677877652 222 3999999999999999999999999999999998764 5999999987532
Q ss_pred -hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 260 -ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 260 -~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
...++.++|++|+..+++.+|++||+.+....+. .. .....+.+.++++.+++.+..++.. ..||+|||||
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQR 136 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHH
Confidence 1234679999999888888999999987643211 11 1233456788999999987666654 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|+++.+
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l 202 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFL 202 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEE
Confidence 9999999999999999999999999999999999999875 4899999999996 677889998753
No 129
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-42 Score=326.77 Aligned_cols=205 Identities=27% Similarity=0.297 Sum_probs=167.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++||++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 378899998763 356999999999999999999999999999999999987763 2479999999
Q ss_pred ccCc-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKV-----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++. ...+++.++|++|++.+++.+|++||+.++...+.. ........+.++++++.+++.. ..++.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8753 123566799999998888889999999986543211 0112233456778888888743 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|+++.
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~ 220 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAF 220 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEE
Confidence 347999999999999999999999999999999999999999999999864 799999999997 67889999875
No 130
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-42 Score=329.44 Aligned_cols=205 Identities=25% Similarity=0.367 Sum_probs=170.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS--EGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCEEEECCEeh
Confidence 489999998762 356999999999999999999999999999999999988764 59999999864
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
. ...+++.++|++|+..+++.+|+.||+.+....... .........+.++++++.+++.+..++.. .+|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 2 234456799999987778889999999876421110 00111223456788999999977666664 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~ 220 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVA 220 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999997 68889999875
No 131
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.2e-42 Score=329.29 Aligned_cols=208 Identities=24% Similarity=0.325 Sum_probs=171.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-eeeEEEECCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS-MEGEIKIGGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~-~~G~I~i~G~~ 256 (404)
.++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++.. .+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 378899998762 3569999999999999999999999999999999999887642 36999999986
Q ss_pred Cch--------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc-----cCChhhHHHHHHHHHHHcCCCCCccccc
Q 015591 257 KVQ--------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP-----EINSKTKAEFVNEVLETIELDGIKDSLV 323 (404)
Q Consensus 257 ~~~--------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~v 323 (404)
+.. ...++.++|++|++.+++.+|++||+.+......+. ........+.++++++.+++.+..++..
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 531 233567899999988888899999998764211000 0111233457889999999987666654
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccc
Q 015591 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 324 g~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++...+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 47999999999999999999999999999999999999999999999975 4899999999997 5788999987
Q ss_pred cC
Q 015591 403 QF 404 (404)
Q Consensus 403 ~~ 404 (404)
++
T Consensus 225 ~l 226 (262)
T PRK09984 225 AL 226 (262)
T ss_pred EE
Confidence 53
No 132
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-43 Score=315.60 Aligned_cols=195 Identities=27% Similarity=0.397 Sum_probs=171.7
Q ss_pred ccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch----hhhcceeEEeecCCCC
Q 015591 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----ETFARVSGYCEQTDIH 275 (404)
Q Consensus 200 ~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~g~v~Q~~~~ 275 (404)
++++++++++||+++++||+++|+|||||||||.+.++.|+..++ +|.|.+||.++.. ...|..+||++|+...
T Consensus 13 ~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d--~G~i~ld~~diT~lPm~~RArlGigYLpQE~SI 90 (243)
T COG1137 13 SYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD--SGKILLDDEDITKLPMHKRARLGIGYLPQEASI 90 (243)
T ss_pred hhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC--CceEEECCcccccCChHHHhhcCcccccccchH
Confidence 345788999999999999999999999999999999999998875 5999999998653 2345679999999999
Q ss_pred CCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 015591 276 SPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 355 (404)
Q Consensus 276 ~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLD 355 (404)
|..+||+||+......+... ....+++..++++++.+.+.++.+..- ..||||||+|+.|||||+.+|+.++||
T Consensus 91 Fr~LtV~dNi~~vlE~~~~d-~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLD 164 (243)
T COG1137 91 FRKLTVEDNIMAVLEIREKD-LKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLD 164 (243)
T ss_pred hhcCcHHHHHHHHHhhhhcc-hhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEec
Confidence 99999999999887665422 223455667889999999999998863 369999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++|+||.+...|.++++.|+++|..|++|-|+.. |.+++|||...
T Consensus 165 EPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYI 211 (243)
T COG1137 165 EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYI 211 (243)
T ss_pred CCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEE
Confidence 999999999999999999999999999999999997 89999998653
No 133
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-42 Score=326.77 Aligned_cols=204 Identities=26% Similarity=0.349 Sum_probs=167.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 378899998763 356999999999999999999999999999999999987642 2479999999
Q ss_pred ccCc-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKV-----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++. ....++.++|++|+..+++.+|++||+.++...+. ........+.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 8752 12456779999998888888999999988754321 1122333456788898888742 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|+++.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~-~~~~~~d~i~~ 219 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQ-QAARVSDQTAF 219 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhCCEEEE
Confidence 34799999999999999999999999999999999999999999999986 4799999999987 68889999875
No 134
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-42 Score=331.25 Aligned_cols=202 Identities=21% Similarity=0.299 Sum_probs=168.4
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ +++.+|+||||+|++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ--KGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEECC
Confidence 57788888763 1245999999999999999999999999999999999998764 699999998753
Q ss_pred h----hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 259 Q----ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 259 ~----~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
. ...++.++|++|++. .++..|++||+.+..... ........+.++++++.+++.+..++.. ..||+
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999864 466789999998865332 1233344566888999999987777654 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++ ..+|+++.+
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l 208 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVM 208 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999997 45 569998753
No 135
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-42 Score=330.65 Aligned_cols=201 Identities=23% Similarity=0.310 Sum_probs=166.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ--KGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--ccEEEECCEEcc
Confidence 57788888662 356999999999999999999999999999999999988764 699999998752
Q ss_pred h-----hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q-----ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~-----~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ...++.++|++|++. .++..|+.||+.+....+. ....+..+.++++++.+++.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG---VPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 234567999999764 3456689999988643321 222333456788999999987766654 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~ 208 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYV 208 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999767999999999997 67788999875
No 136
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=6.3e-42 Score=327.05 Aligned_cols=204 Identities=27% Similarity=0.370 Sum_probs=168.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD--AGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CCEEEECCEEcc
Confidence 56788887662 457999999999999999999999999999999999988764 599999998753
Q ss_pred h---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 259 Q---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...++.++|++|+...++.+||+||+.++...... ......+..+.+.++++.+++.+..++.+ ..||+|
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 2 23456789999987777889999999885321100 00111233456788999999987667664 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|++++
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 209 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVV 209 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999867899999999997 68889999875
No 137
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=5.2e-42 Score=320.93 Aligned_cols=195 Identities=23% Similarity=0.351 Sum_probs=165.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+...
T Consensus 2 ~l~~v~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRF-------------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT--SGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEE-------------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEeccc
Confidence 567777765 2356999999999999999999999999999999999988764 6999999987543
Q ss_pred hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHH
Q 015591 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL 339 (404)
Q Consensus 260 ~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl 339 (404)
.. ++.++|++|++.+++.+|++||+.+....+. .. .+.+.++++.+++.+..++.. ..||+|||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 3578999998888888999999987654321 11 235678899999987776654 46999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+||||++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 196 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGI 196 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEE
Confidence 9999999999999999999999999999999999999777999999999997 68889999865
No 138
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.5e-42 Score=396.16 Aligned_cols=212 Identities=22% Similarity=0.332 Sum_probs=174.6
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC------------
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG------------ 244 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~------------ 244 (404)
..++|+||+|.|+.. .++++|+|+||++++|+.+||+||||||||||+++|.|+++|.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 359999999998531 1346999999999999999999999999999999999998872
Q ss_pred ----------------------------------------ceeeEEEECCccCc---hhhhcceeEEeecCCCCCCCCCH
Q 015591 245 ----------------------------------------SMEGEIKIGGYPKV---QETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 245 ----------------------------------------~~~G~I~i~G~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
+.+|+|++||.++. ...+|+.++||+|++.+ ++.|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L-F~gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML-FNMSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc-ccccH
Confidence 14799999999853 46788999999997665 57899
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
+|||.++.......++..+.+.+.++++++ .|++..|+.+|+.|. .||||||||++|||||+++|+|||||||||+|
T Consensus 1313 reNI~~g~~~at~eeI~~A~k~A~l~~fI~--~LP~GydT~VGe~G~-~LSGGQkQRIaIARALlr~p~ILLLDEaTSaL 1389 (1466)
T PTZ00265 1313 YENIKFGKEDATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYGK-SLSGGQKQRIAIARALLREPKILLLDEATSSL 1389 (1466)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCHHHHH--hCccccCCccCCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 999999743211122222333344555555 577889999998765 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHhccccccC
Q 015591 362 DARAAAIIMRAVKNVV-DTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 362 D~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|+++++.|++.|+++. .+++|+|+|+|+++ ....+|+++++
T Consensus 1390 D~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl 1431 (1466)
T PTZ00265 1390 DSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVF 1431 (1466)
T ss_pred CHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEE
Confidence 9999999999999986 36899999999996 46789999864
No 139
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-42 Score=330.80 Aligned_cols=206 Identities=25% Similarity=0.346 Sum_probs=166.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. ....+++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~--------~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAG--------TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT--QGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCC--------CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcc
Confidence 7889999877320 000135999999999999999999999999999999999998764 699999998753
Q ss_pred h-------hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCC
Q 015591 259 Q-------ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVN 329 (404)
Q Consensus 259 ~-------~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~ 329 (404)
. ..+++.++|++|++. .++..|++||+.+...... ....+..+.++++++.+++. ...++.+ .
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFG---VSQEEAEALAREKLALVGISESLFEKNP-----F 144 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCCc-----c
Confidence 2 234567999999752 3345799999998643321 12233345678889999996 3455553 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 145 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~ 217 (280)
T PRK13649 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYV 217 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEE
Confidence 79999999999999999999999999999999999999999999999767999999999996 67788999875
No 140
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.2e-42 Score=315.20 Aligned_cols=187 Identities=26% Similarity=0.346 Sum_probs=159.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD--AGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEcc
Confidence 56788887662 356999999999999999999999999999999999998764 599999998753
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ...++.++|++|++.+++.+|++||+.+....+. . ...+.++++++.+++.+..++.+ ..||+|||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 2 2345678999998888888999999998754321 1 22356788999999987666654 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 9999999999999999999999999999999999999998777899999999986
No 141
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=6.8e-42 Score=323.11 Aligned_cols=193 Identities=28% Similarity=0.371 Sum_probs=161.6
Q ss_pred ccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch--hhhcceeEEee-cCCCCC
Q 015591 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ--ETFARVSGYCE-QTDIHS 276 (404)
Q Consensus 200 ~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~g~v~-Q~~~~~ 276 (404)
+++.+++|+|+||++++||+++|+|+||||||||+++|+|+.+|. +|+|.++|.+... ...++.++|++ |.+.++
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT--SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 345678999999999999999999999999999999999988764 6999999986422 23456789997 445667
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDE 356 (404)
+.+|++||+.+....+. ....+..+.++++++.+++.+..++.+ ..||+|||||++|||||+.+|++|||||
T Consensus 108 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDE 179 (236)
T cd03267 108 WDLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDE 179 (236)
T ss_pred CCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 88999999988654321 122333456778899999987777764 3699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 180 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~ 226 (236)
T cd03267 180 PTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLV 226 (236)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 99999999999999999998764 899999999997 67888999875
No 142
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=324.20 Aligned_cols=207 Identities=25% Similarity=0.314 Sum_probs=165.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--T-GSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.. + .+.+|+|.++|
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14242 6 KMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72 (253)
T ss_pred EEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC
Confidence 589999999773 3469999999999999999999999999999999999753 1 13579999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
+++.. ..+++.++|++|++.+++ .|++||+.++...+.. .......+.++++++.+++.+........+ +.
T Consensus 73 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~ 148 (253)
T PRK14242 73 ENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHES-AL 148 (253)
T ss_pred EEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhCC-cc
Confidence 87531 234677999999877776 5999999987533211 112233456778888888854211111111 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|+++.
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~ 220 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAF 220 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEE
Confidence 799999999999999999999999999999999999999999999986 4799999999997 67789999875
No 143
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=323.50 Aligned_cols=207 Identities=22% Similarity=0.312 Sum_probs=164.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC---CCCCceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR---KTTGSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~---~~~~~~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+ .++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 478899988762 35699999999999999999999999999999999996 23322469999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
.++.. ...++.++|++|++.+++ .|++||+.++...+.. .......+.++++++.+++.+..+.....+ +.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKES-AF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhCC-cc
Confidence 87532 234667999999877665 6999999887543311 111223456788899888864221111111 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|+++.
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~ 217 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAF 217 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEE
Confidence 799999999999999999999999999999999999999999999985 5899999999997 68889999875
No 144
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=326.01 Aligned_cols=205 Identities=23% Similarity=0.314 Sum_probs=166.8
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEEE
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--T-GSMEGEIKI 252 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i 252 (404)
...++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ + .+.+|+|.+
T Consensus 11 ~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~ 77 (260)
T PRK10744 11 PSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL 77 (260)
T ss_pred CceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence 44589999999773 3469999999999999999999999999999999999865 2 135799999
Q ss_pred CCccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----Cccccc
Q 015591 253 GGYPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLV 323 (404)
Q Consensus 253 ~G~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~v 323 (404)
+|.++.. ..+++.++|++|+..+++ .|++||+.+...... .....+..+.++++++.+++.+ ..++.
T Consensus 78 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 153 (260)
T PRK10744 78 DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS- 153 (260)
T ss_pred CCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC-
Confidence 9987531 234678999999877666 899999988653221 1222333456788999988743 22332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 324 g~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
...||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ ++.|||++||+++ ++.+.+|+++.
T Consensus 154 ----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~ 227 (260)
T PRK10744 154 ----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAF 227 (260)
T ss_pred ----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEE
Confidence 34799999999999999999999999999999999999999999999986 4789999999986 67788999875
No 145
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.3e-42 Score=322.24 Aligned_cols=198 Identities=25% Similarity=0.326 Sum_probs=162.6
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK--SGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCEECCC
Confidence 5677877652 357999999999999999999999999999999999998764 6999999987532
Q ss_pred ---h-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-CCCCccccccCCCCCCCCHH
Q 015591 260 ---E-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-LDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 260 ---~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~vg~~~~~~LSgG 334 (404)
. ..++.++|++|+..+++.+|++||+.+....+.. ...+..+++++.++ +.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~------~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPR------RSRKIPDEIYELFPVLKEMLGRRG-----GDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc------chHHHHHHHHHHHHhHHHHhhCCh-----hhCCHH
Confidence 1 2345799999998888889999999887543211 11233566777765 455555553 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++++
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l 205 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVM 205 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999998864 899999999987 677789998753
No 146
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-42 Score=327.78 Aligned_cols=206 Identities=24% Similarity=0.299 Sum_probs=171.1
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA--HGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CcEEEECCEE
Confidence 4689999999773 356999999999999999999999999999999999988764 5999999987
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
+.. ...++.++|++|+..+++..|++||+.+....... .........+.++++++.+++.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCC
Confidence 532 23456799999998888889999999875311100 00011223456788999999987666654 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|+++.
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~ 216 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIA 216 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999764 899999999997 68999999875
No 147
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=329.29 Aligned_cols=203 Identities=25% Similarity=0.359 Sum_probs=169.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ +++.+|+|+||++++||+++|+|+||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEECC
Confidence 77889998773 1235999999999999999999999999999999999988764 699999998753
Q ss_pred h---hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 259 Q---ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...++.++|++|++. .++..||+||+.+..... ........+.++++++.+++.+..++.+ ..||+|
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 2 345567899999863 345689999998765322 1223334456789999999987777664 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.+
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l 211 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVM 211 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999765 899999999997 688899998753
No 148
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.8e-42 Score=372.78 Aligned_cols=200 Identities=26% Similarity=0.373 Sum_probs=162.3
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+.. .++++|+|+||+++|||.+||+||||||||||+++|+|+++|. +|+|.+||++
T Consensus 477 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT--GGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCEEEECCEE
Confidence 359999999988521 1356999999999999999999999999999999999998875 5999999988
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-------CCCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~ 326 (404)
+. ...+++.++||+|++.+ ++.|++|||.++... .+ ++.+.++++..+ +++..|+.+|+.
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~l-F~gTIreNI~~g~~~-----~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVL-FSGSVRENIAYGLTD-----TP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred HHhcCHHHHHhhceEEecCccc-cccCHHHHHhcCCCC-----CC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 53 35678899999997664 567999999986321 11 122333444333 455678889887
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|. +||||||||++|||||+++|+|||||||||+||+++++.+.+ .. ...++|+|++||+++ ..+.+|+++++
T Consensus 615 G~-~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL 686 (711)
T TIGR00958 615 GS-QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVL 686 (711)
T ss_pred CC-cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEE
Confidence 64 699999999999999999999999999999999999999998 22 235899999999986 46789998763
No 149
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.8e-42 Score=316.12 Aligned_cols=195 Identities=27% Similarity=0.339 Sum_probs=162.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA--AGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEeCc
Confidence 77888888762 356999999999999999999999999999999999987764 699999998743
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
....++.++|++|++.+++.+|++||+.+....+. ...+.+.++++.+++.+..+... ..||+|||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG-------GEELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC-------CcHHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22256678999998888888999999987643321 11234788999999976666554 3699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.. |+++.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~ 197 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELD 197 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEe
Confidence 99999999999999999999999999999999999998777999999999986 3443 76653
No 150
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-42 Score=330.69 Aligned_cols=204 Identities=25% Similarity=0.324 Sum_probs=170.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|.. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|. +|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~--~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE--AGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 3889999997731 1245999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.++|++|++. .++..||+||+.++..... ...++..+.++++++.++|.+..++.. ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG---VPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 42 234567999999863 5677899999998754321 223344567889999999987777664 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++. .+|+++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l 213 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVM 213 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEE
Confidence 9999999999999999999999999999999999999999999865 899999999997 454 59998753
No 151
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-42 Score=356.91 Aligned_cols=208 Identities=21% Similarity=0.297 Sum_probs=173.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+||||++++||+++|+||||||||||+|+|+|+.++++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 388999998762 3569999999999999999999999999999999999887633579999999875
Q ss_pred chh----hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQE----TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~~----~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
... ..++.++||+|++.+++.+||+||+.++...+...........+.++++++.+++.+..++.+ .+|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 321 234669999999888889999999998753321111122333456889999999987777765 37999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|+++++
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l 216 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVI 216 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999987 677889998753
No 152
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-42 Score=307.12 Aligned_cols=187 Identities=27% Similarity=0.402 Sum_probs=166.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
+.+|+|+|+++.+||.++++||||||||||||+++|+.+|. .|+|.+||.++....- ..|.|+|++.++|.+++.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~--~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS--RGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc--cceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 45999999999999999999999999999999999998875 5999999998754332 3489999999999999999
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
|+.|+..++. +.++++.+.+.+.+..+||.+..++.+- +||||||||+.|||||+.+|++|+||||+++||.
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~i~-----qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKYIW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccceE-----eecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 9999998875 5677888999999999999988877753 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 364 RAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 364 ~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
-+++++.++|-++.+ .|+.+++|||+.+..+| +.+++++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ieEAlf-latrLvv 205 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIEEALF-LATRLVV 205 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHh-hhheeEE
Confidence 999999999999875 59999999999986665 5566554
No 153
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=328.41 Aligned_cols=203 Identities=30% Similarity=0.374 Sum_probs=168.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|. +++.+++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT--SGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCEECc
Confidence 67888888763 1245999999999999999999999999999999999988764 599999998753
Q ss_pred h-----hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q-----ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~-----~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ...++.++|++|++. .++..||+||+.+..... .....+..+.+.++++.+++.+..++.. ..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 234677999999753 345579999998764321 1223344466788999999988777764 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...||+++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l 210 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVM 210 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999767999999999987 678889998753
No 154
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=322.85 Aligned_cols=208 Identities=23% Similarity=0.291 Sum_probs=167.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--TG-SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 488999998763 3569999999999999999999999999999999999865 32 2469999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
.++.. ..+++.++|++|+..+++.+|++||+.+....... ....+..+.++++++.+++.......... .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGR--VNRSEADEIVESSLKRVALWDEVKDRLKS-NAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhC-CcC
Confidence 87531 23567799999998888889999999876433211 11223345678888888885421111111 135
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||+++.
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~ 219 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAF 219 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEE
Confidence 7999999999999999999999999999999999999999999999975 689999999997 67889999875
No 155
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.5e-41 Score=326.21 Aligned_cols=211 Identities=23% Similarity=0.315 Sum_probs=168.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+..-..+ ..+++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEcc
Confidence 78899999874210000 011357999999999999999999999999999999999998764 699999998753
Q ss_pred h---h---hhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCC
Q 015591 259 Q---E---TFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVN 329 (404)
Q Consensus 259 ~---~---~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~ 329 (404)
. . ..++.++|++|++ .+.+.+|++||+.+...... ........+.+.++++.+++. ...+... .
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLP-----R 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCCh-----h
Confidence 2 1 2456799999985 35677999999987643211 122233456688999999995 5556553 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++.
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~ 223 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAV 223 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEE
Confidence 79999999999999999999999999999999999999999999999765 899999999987 67788999875
No 156
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=325.07 Aligned_cols=212 Identities=24% Similarity=0.258 Sum_probs=169.5
Q ss_pred CCCCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeE
Q 015591 173 PFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGE 249 (404)
Q Consensus 173 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~ 249 (404)
|.....++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 33445699999999773 356999999999999999999999999999999999987541 35799
Q ss_pred EEECCccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcccccc
Q 015591 250 IKIGGYPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG 324 (404)
Q Consensus 250 I~i~G~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg 324 (404)
|.++|.++.. ...++.++|++|++.+++ .|++||+.++..... ........+.+.++++.+++.+..+....
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999987531 234667999999877666 699999998643221 11222334567788888888532222222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 325 ~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+ +..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++
T Consensus 159 ~~-~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~ 234 (267)
T PRK14237 159 KS-ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAF 234 (267)
T ss_pred CC-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEE
Confidence 22 35799999999999999999999999999999999999999999999986 4799999999997 68899999875
No 157
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.1e-41 Score=311.14 Aligned_cols=179 Identities=25% Similarity=0.356 Sum_probs=150.7
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-----hhhcceeEEeecCCC-CC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-----ETFARVSGYCEQTDI-HS 276 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-----~~~~~~~g~v~Q~~~-~~ 276 (404)
++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+... ..+++.++|++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ--SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 356999999999999999999999999999999999988764 6999999987531 134567999999863 34
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDE 356 (404)
+..|++||+.+..... .....+..+.++++++.+++.+..++.+ ..||+|||||++|||||+.+|++|||||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4679999999865322 1222333456788999999987777664 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
||+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999986
No 158
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5.6e-42 Score=362.18 Aligned_cols=201 Identities=24% Similarity=0.357 Sum_probs=166.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|+|+. .++++|+|+|+++++||.++|+|+||||||||+++|+|+++|. +|+|.+||.++
T Consensus 330 ~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~--~G~I~i~g~~i 396 (571)
T TIGR02203 330 DVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD--SGQILLDGHDL 396 (571)
T ss_pred eEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCeEEECCEeH
Confidence 5999999998742 2346999999999999999999999999999999999998875 59999999874
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-------CCCCccccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDGIKDSLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~~ 327 (404)
. ...+++.++||+|++. +++.|++|||.++.. ++.+ ++.++++++.++ +++..|+.+|+.|
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~-lf~~Ti~~Ni~~~~~----~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g 467 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVV-LFNDTIANNIAYGRT----EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENG 467 (571)
T ss_pred HhcCHHHHHhhceEEccCcc-cccccHHHHHhcCCC----CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCC
Confidence 3 3567888999999765 557799999998631 0111 123344444443 4566788898775
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||||||||++||||++++|++|+||||||+||+.+++.+++.|+++. .++|+|++||+++ ..+.||+++.+
T Consensus 468 -~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l 540 (571)
T TIGR02203 468 -VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVM 540 (571)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999875 5799999999984 68889998753
No 159
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-41 Score=313.82 Aligned_cols=186 Identities=31% Similarity=0.559 Sum_probs=156.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~ 256 (404)
+++|+||+|.|+.+ .+++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58999999998642 13467999999999999999999999999999999999987732 357999999987
Q ss_pred Cch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 257 KVQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 257 ~~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
+.. ...++.++|++|++.+++.+||+||+.+..... .+.. ...||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 542 235667999999988888999999998753210 2222 2469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ +.|+|+++|+...++.+.+|+++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 999999999999999999999999999999999999999999765 678888777665578899999875
No 160
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=325.16 Aligned_cols=204 Identities=24% Similarity=0.299 Sum_probs=166.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 599999999773 356999999999999999999999999999999999987641 2579999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC----ccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI----KDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~vg~ 325 (404)
.++.. ..+++.++|++|++..++ .|++||+.++...+.. ........+.+.++++.+++.+. .++.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFP-KSIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCC-CcHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87531 234677999999877666 4999999987543211 01122334567888999898542 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+...+|+++.
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~ 234 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAF 234 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEE
Confidence 347999999999999999999999999999999999999999999999865 789999999987 67788999875
No 161
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.6e-41 Score=312.08 Aligned_cols=193 Identities=24% Similarity=0.309 Sum_probs=160.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+...
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSR-------------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD--SGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEE-------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCEEccc
Confidence 567777765 3467999999999999999999999999999999999988764 6999999986432
Q ss_pred --hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 260 --ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 260 --~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
..+++.++|++|++.+++.+|++||+.+....+. . + .+.+.++++.+++.+..++.+ ..||+||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2345678999998887888999999988643321 1 1 245678899999987766654 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
|++||||++.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++. .-.+++++
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~---~~~~~~~~ 196 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL---GLVEAREL 196 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc---cccceEEe
Confidence 999999999999999999999999999999999999998777999999999985 22346554
No 162
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=326.33 Aligned_cols=203 Identities=24% Similarity=0.304 Sum_probs=165.3
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIG 253 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~ 253 (404)
..++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++. +.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3599999999773 356999999999999999999999999999999999986531 257999999
Q ss_pred CccCc-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----Ccccccc
Q 015591 254 GYPKV-----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVG 324 (404)
Q Consensus 254 G~~~~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg 324 (404)
|.++. ....++.++|++|++.+++ .||+||+.+....+. .. ....+.+.++++.+++.. ..++.
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98752 2345667999999887776 599999998764331 11 122345677788877642 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 325 ~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ +++|||++||+++ ++...+|+++++
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 34799999999999999999999999999999999999999999999986 4799999999997 688999998753
No 163
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=327.27 Aligned_cols=203 Identities=23% Similarity=0.347 Sum_probs=168.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+. +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ--SGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEec
Confidence 4899999997631 2356999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ..+++.++|++|++. .++.+|++||+.+..... .....+..+.++++++.+++.+..++.. ..|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 32 245678999999863 567789999998864322 1222334456788999999987777664 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ ++|||++||+++. + ..+|++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~ 214 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIV 214 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEE
Confidence 9999999999999999999999999999999999999999998765 5999999999973 4 47999875
No 164
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-42 Score=349.08 Aligned_cols=200 Identities=28% Similarity=0.442 Sum_probs=167.2
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
+..++.+|++|.|+. + +++++|+|+++++|+.+||+|+||||||||+++|+|+.++. +|+|.+||.
T Consensus 318 ~~ei~~~~l~~~y~~-----------g-~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~--~G~I~vng~ 383 (559)
T COG4988 318 PIEISLENLSFRYPD-----------G-KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT--QGEIRVNGI 383 (559)
T ss_pred CceeeecceEEecCC-----------C-CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC--CceEEECCc
Confidence 456777899998753 2 37999999999999999999999999999999999998874 699999998
Q ss_pred cC---chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC------CCCccccccCC
Q 015591 256 PK---VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL------DGIKDSLVGIP 326 (404)
Q Consensus 256 ~~---~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l------~~~~~~~vg~~ 326 (404)
+. +...+++.++||+|++.+ +..|++||+.++.... + ++.+.++++..++ ++..|+.+|+.
T Consensus 384 ~l~~l~~~~~~k~i~~v~Q~p~l-f~gTireNi~l~~~~~-----s----~e~i~~al~~a~l~~~v~~p~GLdt~ige~ 453 (559)
T COG4988 384 DLRDLSPEAWRKQISWVSQNPYL-FAGTIRENILLARPDA-----S----DEEIIAALDQAGLLEFVPKPDGLDTVIGEG 453 (559)
T ss_pred cccccCHHHHHhHeeeeCCCCcc-ccccHHHHhhccCCcC-----C----HHHHHHHHHHhcHHHhhcCCCcccchhccC
Confidence 74 456789999999997765 5569999999974321 1 2333444444443 45678889987
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
| .+|||||+|||++||||+++++++++|||||+||.++++.|++.|.++++ ++|+|++||++. .....|+|++
T Consensus 454 G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~v 526 (559)
T COG4988 454 G-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVV 526 (559)
T ss_pred C-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEE
Confidence 6 47999999999999999999999999999999999999999999999985 699999999985 5778898875
No 165
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.4e-41 Score=340.14 Aligned_cols=194 Identities=21% Similarity=0.285 Sum_probs=166.3
Q ss_pred cccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc----cCc---hhh---h-cceeE
Q 015591 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY----PKV---QET---F-ARVSG 267 (404)
Q Consensus 199 ~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~----~~~---~~~---~-~~~~g 267 (404)
.+++...+|+|+||++++||+++|+|+||||||||+++|+|+.+|. +|+|.++|. ++. ... . ++.++
T Consensus 32 ~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~--~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~ 109 (382)
T TIGR03415 32 DETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS--RGSVLVKDGDGSIDVANCDAATLRRLRTHRVS 109 (382)
T ss_pred HhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEECCEecccccccCCHHHHHHHhcCCEE
Confidence 3456678999999999999999999999999999999999998864 599999995 221 111 2 25799
Q ss_pred EeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc
Q 015591 268 YCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA 347 (404)
Q Consensus 268 ~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~ 347 (404)
||+|+..+++.+||+||+.|+...+. ....+..+.+.++++.++|.+..++.. .+||||||||++|||||+.
T Consensus 110 ~vfQ~~~l~p~~Tv~eNi~~~~~~~g---~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~ 181 (382)
T TIGR03415 110 MVFQKFALMPWLTVEENVAFGLEMQG---MPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAM 181 (382)
T ss_pred EEECCCcCCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999864432 233455667899999999988777764 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|++|||||||+|||+.++..+++.|.++.++ |+|||++|||++ ++.+.+|+++.
T Consensus 182 ~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~v 237 (382)
T TIGR03415 182 DADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAI 237 (382)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999765 999999999997 68899999875
No 166
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1e-41 Score=358.49 Aligned_cols=207 Identities=27% Similarity=0.377 Sum_probs=165.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|++|.|+. +++++|+|+|+++++||.++|+||||||||||+++|+|+++|. +|+|.+||.++
T Consensus 316 ~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~i 382 (544)
T TIGR01842 316 HLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT--SGSVRLDGADL 382 (544)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEeh
Confidence 5999999998742 2356999999999999999999999999999999999998874 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...+++.++||+|++.+++ .|++||+.+........++....+....+++++. +++..|+.+|+.| ..||||
T Consensus 383 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~--l~~gl~t~~~~~g-~~LSgG 458 (544)
T TIGR01842 383 KQWDRETFGKHIGYLPQDVELFP-GTVAENIARFGENADPEKIIEAAKLAGVHELILR--LPDGYDTVIGPGG-ATLSGG 458 (544)
T ss_pred hhCCHHHHhhheEEecCCccccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHh--CccccccccCCCc-CCCCHH
Confidence 3 3456788999999877665 5999999864311000111111122233455553 4556688888765 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+++|++||||||||+||++++..+.+.|+++.++|+|+|++||+++ ..+.+|+++.
T Consensus 459 q~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~ 525 (544)
T TIGR01842 459 QRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILV 525 (544)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEE
Confidence 999999999999999999999999999999999999999998656899999999996 4678999875
No 167
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-43 Score=347.38 Aligned_cols=212 Identities=25% Similarity=0.344 Sum_probs=181.8
Q ss_pred ccCCCCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEE
Q 015591 171 VLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEI 250 (404)
Q Consensus 171 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I 250 (404)
++......++|+||+|.|++ ++++|+||||++.||+.+||+||||+||||++++|.++.+. .+|.|
T Consensus 530 pl~~~~G~i~fsnvtF~Y~p------------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv--~sGsI 595 (790)
T KOG0056|consen 530 PLKVTQGKIEFSNVTFAYDP------------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV--NSGSI 595 (790)
T ss_pred CccccCCeEEEEEeEEecCC------------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc--cCceE
Confidence 34556678999999999864 47899999999999999999999999999999999998775 46999
Q ss_pred EECCccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 251 KIGGYPKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 251 ~i~G~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
.+||+++. ..++|+.||.|||+.. +++.|+..|++|+..-..++++..+.+.+.+++-+ +++++..++.+|++|
T Consensus 596 ~iDgqdIrnvt~~SLRs~IGVVPQDtv-LFNdTI~yNIryak~~AsneevyaAAkAA~IHdrI--l~fPegY~t~VGERG 672 (790)
T KOG0056|consen 596 TIDGQDIRNVTQSSLRSSIGVVPQDTV-LFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRI--LQFPEGYNTRVGERG 672 (790)
T ss_pred EEcCchHHHHHHHHHHHhcCcccCcce-eecceeeeheeecCCCCChHHHHHHHHHhhHHHHH--hcCchhhhhhhhhcc
Confidence 99999864 3578899999999554 56779999999987655555665566666666554 378999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+ |||||||||+|||+++++|.+++|||+||+||..++++|+..|.+++ .++|.|+++|++|. .-..|.+|+
T Consensus 673 Lk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc-a~RTtIVvAHRLST--ivnAD~ILv 744 (790)
T KOG0056|consen 673 LK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC-ANRTTIVVAHRLST--IVNADLILV 744 (790)
T ss_pred cc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh-cCCceEEEeeeehh--eecccEEEE
Confidence 86 99999999999999999999999999999999999999999999998 58999999999985 334676665
No 168
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.4e-41 Score=315.95 Aligned_cols=198 Identities=25% Similarity=0.359 Sum_probs=164.6
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++||++.|+ ..++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|+++..
T Consensus 2 ~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA--SGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEccc
Confidence 5677877652 1467999999999999999999999999999999998764 6999999987532
Q ss_pred -hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 260 -ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 260 -~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
...++.++|++|++.+++.+|++||+.+...... . ......+.++++++.+++.+..++.. ..||+|||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHH
Confidence 2345679999999888888999999987542211 1 11123456788999999987666654 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|+++.
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~ 201 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAV 201 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEE
Confidence 99999999999999999999999999999999999998764 899999999987 67788999875
No 169
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.1e-41 Score=316.31 Aligned_cols=206 Identities=26% Similarity=0.430 Sum_probs=170.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|... .+.+.+|+|+||++++|++++|+|+||||||||+++|+|++++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhH
Confidence 6788888876310 1125799999999999999999999999999999999998876 4699999998753
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ...++.++|++|++.+++.+|+.||+.+...... .....+..+.+.++++.+++.+..++.. ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 2 1346789999998888888999999998654321 1223334567889999999987666654 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ +.+.+|+++.+
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l 214 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHM 214 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEE
Confidence 9999999999999999999999999999999999999999999876 4899999999985 45799998753
No 170
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=321.75 Aligned_cols=198 Identities=24% Similarity=0.330 Sum_probs=164.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT--EGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEh
Confidence 378889988762 356999999999999999999999999999999999988764 59999999875
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.++|++|++.+++ .|++||+.+....+. ...+.+.++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG-------EKNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC-------cHHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 344667999999877665 699999987543211 1134577889999996 445554 347999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.+
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l 205 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFL 205 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999998764 999999999997 678889998753
No 171
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=7.8e-42 Score=361.32 Aligned_cols=201 Identities=24% Similarity=0.401 Sum_probs=167.3
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. +++++|+|+||++++||.+||+||||||||||+++|+|+++|. +|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~--~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ--QGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEE
Confidence 36999999998742 2246999999999999999999999999999999999998874 5999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC------CCCccccccCCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL------DGIKDSLVGIPG 327 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l------~~~~~~~vg~~~ 327 (404)
+. ...+++.++||+|++.+ ++.|++||+.++.. +. .++.+.++++.+++ ++..|+.+|+.|
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~l-f~~ti~~Ni~~~~~-----~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~g 473 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHL-FSATLRDNLLLAAP-----NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGG 473 (574)
T ss_pred hhhCCHHHHHhheeEEcccchh-hcccHHHHhhcCCC-----cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCCC
Confidence 53 35678889999997665 45799999998632 11 12334555665555 445788888875
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
. .||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++. ...+|+++++
T Consensus 474 ~-~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l 546 (574)
T PRK11160 474 R-QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVM 546 (574)
T ss_pred C-CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEE
Confidence 4 699999999999999999999999999999999999999999999986 58999999999973 4679998753
No 172
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.4e-41 Score=360.55 Aligned_cols=206 Identities=26% Similarity=0.367 Sum_probs=164.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|.|+. ++++|+|+|++++|||.++|+|+||||||||+|+|+|+++|. +|+|.+||.++
T Consensus 334 ~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~--~G~I~i~g~~i 399 (588)
T PRK13657 334 AVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ--SGRILIDGTDI 399 (588)
T ss_pred eEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCEEh
Confidence 5999999998842 245999999999999999999999999999999999998874 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...+++.++||+|++.+ +..|++||+.++.....++++....+....++.++ .+++..|+.+++.| ..||||
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~--~lp~gldt~i~~~g-~~LSgG 475 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGL-FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIE--RKPDGYDTVVGERG-RQLSGG 475 (588)
T ss_pred hhCCHHHHHhheEEEecCccc-ccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHH--hCcccccchhcCCC-CCCCHH
Confidence 3 35678899999997665 56799999998631110011111111112233333 25566788888765 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+++|++|+||||||+||+.+++.+++.|+++. +++|+|++||+++ ..+.+|+++.+
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l 542 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVF 542 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999875 5899999999985 57889998753
No 173
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-41 Score=329.47 Aligned_cols=207 Identities=20% Similarity=0.307 Sum_probs=166.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+.. ......+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKK--------TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE--TGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCC--------CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEEc
Confidence 48899999987420 000135999999999999999999999999999999999998764 59999999864
Q ss_pred c--------hhhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCC
Q 015591 258 V--------QETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPG 327 (404)
Q Consensus 258 ~--------~~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~ 327 (404)
. ...+++.++|++|++. .++..|++||+.|...... .......+.++++++.+++. +..++..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~---- 148 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLG---ENKQEAYKKVPELLKLVQLPEDYVKRSP---- 148 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhHhcCCh----
Confidence 2 1234667999999863 2345699999998643221 12233345678889999984 5556553
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 149 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~ 223 (289)
T PRK13645 149 -FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIV 223 (289)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999998754 899999999997 68889999875
No 174
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=321.43 Aligned_cols=207 Identities=21% Similarity=0.303 Sum_probs=164.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceeeEEEECCccC
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT-GSMEGEIKIGGYPK 257 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~-~~~~G~I~i~G~~~ 257 (404)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+.+|+|.++|+++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 67888888763 35699999999999999999999999999999999998642 23579999999875
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
.. ...++.++|++|++.+++ .|++||+.++...+.... ......+.+.++++.+++.+......... ...||+|
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQN-ALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCC-cccCCHH
Confidence 32 245677999999877766 699999998653321100 11233456788899999853211111111 3479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +|+|+|++||+++ ++.+.+|+++.
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~ 213 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-HNLSMIMVTHNMQ-QGKRVADYTAF 213 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHhhCcEEEE
Confidence 9999999999999999999999999999999999999999986 4899999999996 67888999875
No 175
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-41 Score=332.39 Aligned_cols=213 Identities=19% Similarity=0.225 Sum_probs=169.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECCc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG--SMEGEIKIGGY 255 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G~ 255 (404)
.++++||++.|... .+...+|+||||++++||++||+|+||||||||+++|+|+.++. +.+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 37899999987421 11256999999999999999999999999999999999987632 25799999998
Q ss_pred cCch---hhh----cceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 256 PKVQ---ETF----ARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 256 ~~~~---~~~----~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
++.. ..+ ++.++||+|++ .+.|.+|+.+++........ ....++..+.+.++++.++|.+..+..-..
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~- 150 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY- 150 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC-
Confidence 7532 112 24699999986 46788999998876543321 123344567788999999997532211111
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+++||||||||++|||||+.+|++||+||||+|||+.++.++++.|+++++ .|.|+|+||||++ .+.+.+|+++++
T Consensus 151 -p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm 227 (326)
T PRK11022 151 -PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVM 227 (326)
T ss_pred -chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999986 4999999999997 577899998753
No 176
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.9e-42 Score=297.18 Aligned_cols=205 Identities=28% Similarity=0.387 Sum_probs=172.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.|+.+++++.+.. ..+...+|++|++.|++||.+||||||||||||||-+++|+..+. +|+|.+.|+++
T Consensus 6 ii~~~~l~ktvg~---------~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s--sGeV~l~G~~L 74 (228)
T COG4181 6 IIEVHHLSKTVGQ---------GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPL 74 (228)
T ss_pred eeehhhhhhhhcC---------CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC--CceEEEcCcch
Confidence 3777788776533 234577999999999999999999999999999999999998874 59999999975
Q ss_pred ch------hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 258 VQ------ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~------~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
.. .. ..+.+|+|||...+.|++|..||+..+..++... ..+..+.+.+.++.+||.+..+- +| .+
T Consensus 75 ~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~H---yP--~q 146 (228)
T COG4181 75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTH---YP--AQ 146 (228)
T ss_pred hhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCccccccc---Cc--cc
Confidence 32 12 3467999999999999999999999998887532 23445667889999999765443 33 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||+|||+||||++..|++||.||||-+||.++..+|.++|-.+.+ .|.|.+++||||. +...|||.+-
T Consensus 147 LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r 218 (228)
T COG4181 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLR 218 (228)
T ss_pred cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheee
Confidence 999999999999999999999999999999999999999999999875 5999999999985 6888998763
No 177
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-41 Score=317.56 Aligned_cols=200 Identities=27% Similarity=0.388 Sum_probs=168.4
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
.++|+++.| +.+.+++|+||++++||+++|+|+||||||||+++|+|.+++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~-------------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~--~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFY-------------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEcCc
Confidence 567777765 2356999999999999999999999999999999999998764 5999999987542
Q ss_pred h-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 260 E-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 260 ~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
. ..++.++|++|++..++.+|++||+.+....+. .......+.++++++.+++.+..++.. ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 1 235679999998888888999999988654331 122233456788999999987777654 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|+++.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~ 203 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAV 203 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 99999999999999999999999999999999999999764 999999999996 68889999875
No 178
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.6e-41 Score=309.60 Aligned_cols=193 Identities=22% Similarity=0.312 Sum_probs=162.4
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeeEEECCCccc
Confidence 57788888662 356999999999999999999999999999999999998764 599999998753
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ..+++.++|++|+..+++..||+||+.+..... . ....++++++.+++.+..++.+ ..||+|||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 345678999999877778899999999864211 1 1235788999999876666654 36999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
||++||||++.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++ ..+.+|..
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~ 196 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYE 196 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchh
Confidence 9999999999999999999999999999999999999998777999999999985 35667643
No 179
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-41 Score=325.78 Aligned_cols=206 Identities=23% Similarity=0.358 Sum_probs=167.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc------eeeEEEE
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS------MEGEIKI 252 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~------~~G~I~i 252 (404)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++.. .+|+|.+
T Consensus 2 l~~~nl~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVAR-------------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEE-------------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 5778888866 24579999999999999999999999999999999999887640 1699999
Q ss_pred CCccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCC
Q 015591 253 GGYPKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328 (404)
Q Consensus 253 ~G~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~ 328 (404)
+|.++. ...+++.++|++|++..++.+|++||+.+....+.. ......+..+.++++++.+++.+..++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 998753 233456689999987666779999999886421110 01111233456788999999987666553
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhc
Q 015591 329 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~---------~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~f 398 (404)
..||||||||++|||||+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 479999999999999999 599999999999999999999999999998765 899999999987 678899
Q ss_pred ccccc
Q 015591 399 DEVKQ 403 (404)
Q Consensus 399 d~~l~ 403 (404)
|+++.
T Consensus 223 d~i~~ 227 (272)
T PRK13547 223 DRIAM 227 (272)
T ss_pred CEEEE
Confidence 99875
No 180
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=4.1e-41 Score=315.54 Aligned_cols=199 Identities=24% Similarity=0.371 Sum_probs=163.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++++++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT--SGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCeEEECCEEc
Confidence 488999998762 356999999999999999999999999999999999987764 69999999864
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSg 333 (404)
. ...+++.++|++|++.+++ .|++||+.+....+.. ....+.++++++.+++. ...++.+ ..||+
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ-----QPDPAIFLDDLERFALPDTILTKNI-----AELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC-----ChHHHHHHHHHHHcCCChHHhcCCc-----ccCCH
Confidence 3 2235677999999877665 5999999886433211 11234567899999985 3455543 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||+++ ++ +.+|+++.+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l 210 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITL 210 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEE
Confidence 999999999999999999999999999999999999999999875 4899999999997 45 469998753
No 181
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.2e-41 Score=332.41 Aligned_cols=213 Identities=22% Similarity=0.310 Sum_probs=172.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~ 256 (404)
.++++||++.|... .+...+|+||||+|++||+++|+|+||||||||+++|+|+.++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 48999999887421 12356999999999999999999999999999999999998763 126999999987
Q ss_pred Cch---hh---hc-ceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 257 KVQ---ET---FA-RVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 257 ~~~---~~---~~-~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
+.. .. ++ +.++||+|++ .+.+.+|+.+++.+...... .....+..+++.++++.++|.+..+..-..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~-- 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMY-- 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCC--
Confidence 532 22 22 4799999986 57788999999987654332 123344456788899999997543332222
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+++||||||||++|||||+.+|++||+||||+|||+.++..|++.|++++++ |.|+|+||||++ .+.+.+|+++++
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm 235 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVM 235 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 4679999999999999999999999999999999999999999999999765 999999999997 677889998763
No 182
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-41 Score=308.95 Aligned_cols=179 Identities=56% Similarity=0.902 Sum_probs=153.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+.. .+++++|+|+||++++||+++|+||||||||||+++|+|+..+.+.+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47899999987421 012569999999999999999999999999999999999754223579999999876
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ..+++.++|++|++.+++.+|++||+.+.... + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhH
Confidence 4 44567799999988888889999999874210 0 39999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|+|++||+++.++.+.+|+++.
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~ 181 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLL 181 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEE
Confidence 999999999999999999999999999999999999998777999999999997557888999875
No 183
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=5.3e-41 Score=314.21 Aligned_cols=209 Identities=22% Similarity=0.279 Sum_probs=165.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC--Cc-
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIG--GY- 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~--G~- 255 (404)
++++|+++.|+.... ...++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD--SGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEEecCCCc
Confidence 678889887742100 001246999999999999999999999999999999999998764 5999998 42
Q ss_pred -cCc---hhh----hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCC
Q 015591 256 -PKV---QET----FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIP 326 (404)
Q Consensus 256 -~~~---~~~----~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~ 326 (404)
++. ... .++.++|++|++.+++.+|++||+.+...... .......+.+.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG---VPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 321 111 23568999999888899999999988643221 2222334567888999998753 3444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+.+||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|+++.+
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~ 222 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDV 222 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEec
Confidence 3479999999999999999999999999999999999999999999999777999999999965 566789998764
No 184
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.4e-41 Score=385.70 Aligned_cols=203 Identities=30% Similarity=0.431 Sum_probs=175.4
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceeeEEEECCccCch--hhhcceeEEeecCCCCCC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT--GSMEGEIKIGGYPKVQ--ETFARVSGYCEQTDIHSP 277 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~--~~~~G~I~i~G~~~~~--~~~~~~~g~v~Q~~~~~~ 277 (404)
.++++|+|||+.+++||+++|+||||||||||||+|+|+... .+.+|+|.+||.+... ..+++.++||+|+|.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 346799999999999999999999999999999999998531 2357999999987532 234567999999999999
Q ss_pred CCCHHHHHHHHhhhhcCc----cCChhhHHHH-HHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 015591 278 QITVEESVIFSAWLRLAP----EINSKTKAEF-VNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 352 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~----~~~~~~~~~~-~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iL 352 (404)
.+||+|++.|++.++.+. ...++++.+. ++++++.++|.+.+|+.+|...+++|||||||||+||++|+.+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998776432 1223333333 56789999999999999998777899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 353 FMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 353 lLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||+++++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L 284 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVL 284 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Confidence 999999999999999999999999864 9999999999988999999999863
No 185
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-41 Score=320.23 Aligned_cols=203 Identities=25% Similarity=0.340 Sum_probs=164.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 378899998763 346999999999999999999999999999999999976431 1469999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++.. ...++.++|++|++.+++ .|++||+.+....... .......+.++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87532 234667999999877666 8999999987533211 112233456778888887742 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|+++.
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~ 217 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAF 217 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEE
Confidence 34799999999999999999999999999999999999999999999986 4899999999986 68888999875
No 186
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-41 Score=331.70 Aligned_cols=214 Identities=22% Similarity=0.266 Sum_probs=172.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|...... .. ..+...+|+||||+|++||++||+|+||||||||+++|+|+.++ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~--~~-~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGL--FK-PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCc--cc-cCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 48999999988531100 00 01135699999999999999999999999999999999999876 469999999875
Q ss_pred ch------hhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCC
Q 015591 258 VQ------ETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGV 328 (404)
Q Consensus 258 ~~------~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~ 328 (404)
.. ..+++.++||+|++ .+.+.+|+.+++........ .....+..+.+.++++.++|.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 32 23466799999986 57788999999987643321 1233445567899999999963 44554 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
++||||||||++|||||+.+|++||+||||++||..++.+|++.|++++++ |.|+|+||||++ .+.+.+|+++++
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm 228 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVM 228 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 579999999999999999999999999999999999999999999999764 999999999987 577789998753
No 187
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-41 Score=319.92 Aligned_cols=204 Identities=26% Similarity=0.340 Sum_probs=164.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--TG-SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478999998763 3569999999999999999999999999999999999743 32 1369999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
+++.. ..+++.++|++|+..+++ .|++||+.+....+.. .......+.+.++++.+++.+ ..++.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGI--KDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87521 234667999999877666 8999999986433211 112223455677888888743 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|+++++
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l 220 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFF 220 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEE
Confidence 347999999999999999999999999999999999999999999999864 699999999997 688899998753
No 188
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.7e-41 Score=366.20 Aligned_cols=208 Identities=25% Similarity=0.398 Sum_probs=166.5
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. +++.+|+|+|+++++||.+||+|+||||||||+++|+|+++|. +|+|++||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~--~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEe
Confidence 36999999998842 2356999999999999999999999999999999999998874 5999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+++.++||+|++. +++.|++||+.++.......++..+.+...+++.++ .+++..|+.+++.| .+|||
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~-lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~--~lp~gl~t~i~~~g-~~LSg 596 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENV-LFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFIS--ELPQGYNTEVGEKG-ANLSG 596 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCe-ehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHH--hCcCccCcEecCCC-CCCCH
Confidence 53 3567888999999665 456799999988531110011111112222334444 35566788898875 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+++|++||||||||+||+.+++.+++.|+++. .++|+|++||+++ ....+|+++++
T Consensus 597 Gq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l 664 (694)
T TIGR01846 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVL 664 (694)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999985 6899999999996 35679998753
No 189
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.9e-41 Score=318.09 Aligned_cols=200 Identities=28% Similarity=0.421 Sum_probs=168.2
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++.+|+|+||++.+||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEcCc
Confidence 5677777662 356999999999999999999999999999999999988764 5999999987542
Q ss_pred h-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 260 E-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 260 ~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
. ..++.++|++|++.+++..|++||+.+....+. .......+.++++++.+++.+..++.. ..||+||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 1 235679999998888888999999988654321 122333456788999999977667654 3699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~ 203 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVV 203 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEE
Confidence 99999999999999999999999999999999999998765 899999999996 67889999875
No 190
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=351.94 Aligned_cols=205 Identities=27% Similarity=0.378 Sum_probs=172.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD--AGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECC
Confidence 78899998762 356999999999999999999999999999999999998764 599999998753
Q ss_pred h----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 259 Q----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 259 ~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
. ...++.++|++|++.+++.+||+||+.++...+.. ......+..+.++++++.+++.+..++.++ +|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCH
Confidence 2 11345799999998888999999999986432210 111223334567899999999887777654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+++.+
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l 214 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVF 214 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999997 688899998753
No 191
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-41 Score=314.30 Aligned_cols=186 Identities=24% Similarity=0.370 Sum_probs=156.9
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhhcceeEEeecCCC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETFARVSGYCEQTDI 274 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~g~v~Q~~~ 274 (404)
+++.+ |+||++++ |+++|+||||||||||+++|+|+.+|. +|+|.++|.+... ...++.++|++|++.
T Consensus 11 ~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 85 (214)
T cd03297 11 PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD--GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85 (214)
T ss_pred CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEecccccchhhhhhHhhcEEEEecCCc
Confidence 34445 99999999 999999999999999999999998764 6999999986431 124567999999988
Q ss_pred CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 015591 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 354 (404)
Q Consensus 275 ~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlL 354 (404)
+++.+|++||+.+..... ......+.++++++.+++.+..++.. ..||||||||++|||||+.+|++|||
T Consensus 86 ~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 86 LFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred cCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888899999998864321 12233456788999999977666653 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++...+|+++.
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 204 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVV 204 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEE
Confidence 9999999999999999999999765 899999999997 57788999875
No 192
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-41 Score=326.20 Aligned_cols=206 Identities=24% Similarity=0.315 Sum_probs=170.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-eeeEEEECCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS-MEGEIKIGGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~-~~G~I~i~G~~ 256 (404)
.++++|+++.|+. ..+++|+|+||++++||+++|+||||||||||+++|+|+.++.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4889999997631 12459999999999999999999999999999999999887642 13899999987
Q ss_pred Cch---hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 257 KVQ---ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
+.. ...++.+||++|++. .++..||+||+.|..... ....++..+.++++++.++|.+..++.. ..||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 642 234567999999863 567889999998864322 1233444567888999999987777664 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..+|+++++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l 216 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVL 216 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEE
Confidence 99999999999999999999999999999999999999999999764 9999999999973 4 579998753
No 193
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-41 Score=325.50 Aligned_cols=208 Identities=23% Similarity=0.290 Sum_probs=169.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+... ....+.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS--EGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEec
Confidence 488999999874210 001246999999999999999999999999999999999998764 59999999875
Q ss_pred ch----hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 258 VQ----ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
.. ...++.+||++|++. .+...|+.||+.|+..... ....+..+.++++++.+++.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLG---IPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcC---CCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 32 234678999999863 3445799999998754321 223344567889999999988777764 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.. +|+++++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l 217 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVM 217 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEE
Confidence 9999999999999999999999999999999999999999999976 4999999999998 4544 9998753
No 194
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-41 Score=318.92 Aligned_cols=204 Identities=24% Similarity=0.297 Sum_probs=165.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 478899988762 356999999999999999999999999999999999986542 2469999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++.. ...++.++|++|++.+++ +|++||+.|....... ....+..+.++++++.+++.+ ..++.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87532 234667999999887766 8999999986533211 112233456778889888743 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|+++++
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l 219 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFF 219 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEE
Confidence 347999999999999999999999999999999999999999999999875 699999999986 688899998753
No 195
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-41 Score=322.19 Aligned_cols=203 Identities=26% Similarity=0.320 Sum_probs=168.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|.. ..+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK--SGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEC
Confidence 4899999997731 1235899999999999999999999999999999999998764 69999999875
Q ss_pred ch---hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.++|++|++. +++..|+++|+.+...... .......+.++++++.+++.+..++.. ..||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA---VPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 32 345677999999864 6777899999988653221 122333456788999999987766653 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.. +|++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~ 214 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIV 214 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999997 4554 999875
No 196
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-41 Score=318.49 Aligned_cols=208 Identities=25% Similarity=0.295 Sum_probs=165.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 478889988763 356999999999999999999999999999999999987653 2469999999
Q ss_pred ccCc----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 255 YPKV----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 255 ~~~~----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
.++. ....++.++|++|++.+++ .|++||+.+....... .......+.+.+.++.+++.+........+ ..+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGI--KDKKVLDEVVERSLRGAALWDEVKDRLKSH-AFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCC--CchHHHHHHHHHHHHHcCCchhhhHHhhcC-ccc
Confidence 8752 1245677999999887776 8999999886432210 112233455677788877753211111111 347
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l 217 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFF 217 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999875 699999999996 688899998753
No 197
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-41 Score=318.68 Aligned_cols=206 Identities=25% Similarity=0.330 Sum_probs=164.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~ 255 (404)
++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 78899998762 356999999999999999999999999999999999986531 24699999998
Q ss_pred cCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 256 PKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 256 ~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
++.. ...++.++|++|++.+++ .|++||+.+....... .......+.+++.++.+++.+..+..... ...+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGV--KSKHKLDRIVEESLKKAALWDEVKSELNK-PGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCchhHHHHhC-Chhh
Confidence 7532 234567999999887766 8999999986533211 11222344567888888875321111111 1347
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~ 217 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAF 217 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999864 799999999987 67888999875
No 198
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.9e-41 Score=317.65 Aligned_cols=186 Identities=23% Similarity=0.335 Sum_probs=156.2
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHH
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVI 286 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~ 286 (404)
|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.... ...+|++|++.+++.+|++||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT--SGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 57999999999999999999999999999999998764 699999998754221 12489999988888899999998
Q ss_pred HHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 015591 287 FSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366 (404)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~ 366 (404)
+...... ......+..+.+.++++.+++.+..++.+ .+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 8632111 11222334456788999999987666654 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 367 AIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 367 ~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~ 187 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVM 187 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 9999999998764 899999999997 68889999875
No 199
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-41 Score=316.70 Aligned_cols=199 Identities=22% Similarity=0.305 Sum_probs=165.3
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+ ++ ..|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYH-------------HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEEC-------------Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCeecC
Confidence 67888988773 12 23899999999999999999999999999999998764 599999998753
Q ss_pred hh-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 QE-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
.. ..++.++|++|++.+++.+|+.||+.+...... . ..+...+.+.++++.+++.+..++.. ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--K-LNAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--C-CCHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 21 234679999999888888999999987532110 1 11233456888999999987777764 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++||||++.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 202 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLV 202 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999998754 899999999997 67888999875
No 200
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=6.1e-41 Score=307.53 Aligned_cols=180 Identities=47% Similarity=0.822 Sum_probs=154.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECCc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK--TTGSMEGEIKIGGY 255 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~--~~~~~~G~I~i~G~ 255 (404)
.++++||++.|+..- +...+++|+|+||++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|+
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECCE
Confidence 488999999874200 001256999999999999999999999999999999999987 65 4699999998
Q ss_pred cCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 256 PKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 256 ~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
+......++.++|++|++.+++.+|++||+.+.... . .||+||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---------------~----------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---------------R----------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh---------------c----------------------cCCHHH
Confidence 865445567899999988888889999999764210 0 399999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++|+|+|++||+++.++.+.+|+++.
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~ 184 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLL 184 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEE
Confidence 99999999999999999999999999999999999999998767999999999998678889999875
No 201
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.6e-41 Score=315.12 Aligned_cols=189 Identities=26% Similarity=0.338 Sum_probs=155.1
Q ss_pred cccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCC
Q 015591 195 RERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDI 274 (404)
Q Consensus 195 ~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~ 274 (404)
+++++.++++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|++... . .+...
T Consensus 26 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~--~-------~~~~~ 94 (224)
T cd03220 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD--SGTVTVRGRVSSL--L-------GLGGG 94 (224)
T ss_pred hhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEchh--h-------ccccc
Confidence 44445556788999999999999999999999999999999999988764 6999999976421 1 11123
Q ss_pred CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 015591 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 354 (404)
Q Consensus 275 ~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlL 354 (404)
+.+.+||+||+.+....+. .......+.+.++++.+++.+..++.+ .+||+|||||++|||+|+.+|++|||
T Consensus 95 ~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llll 166 (224)
T cd03220 95 FNPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLI 166 (224)
T ss_pred CCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4567899999988754321 122333456788899999987777765 37999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 167 DEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 214 (224)
T cd03220 167 DEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALV 214 (224)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999998777899999999986 67788998865
No 202
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-41 Score=330.97 Aligned_cols=214 Identities=16% Similarity=0.233 Sum_probs=167.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceeeEEEECCcc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT--GSMEGEIKIGGYP 256 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~--~~~~G~I~i~G~~ 256 (404)
++++||++.|+.. .+...+|+||||+|++||+++|+|+||||||||+++|+|+.++ .+.+|+|.++|++
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 7889999987421 1235699999999999999999999999999999999998753 1357999999987
Q ss_pred Cch---hhh----cceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCcc---CChhhHHHHHHHHHHHcCCCCCcccccc
Q 015591 257 KVQ---ETF----ARVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPE---INSKTKAEFVNEVLETIELDGIKDSLVG 324 (404)
Q Consensus 257 ~~~---~~~----~~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~vg 324 (404)
+.. ... ++.++||+|++. +.+.+||.+++.+......... ....+..+.+.++++.++|.+..+..-.
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 532 111 346999999865 5678999999976432111000 0112334678899999999753221111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 325 ~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
. +++||||||||++|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|||+||||++ .+.+.+|++++
T Consensus 155 ~--p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~v 231 (330)
T PRK15093 155 F--PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINV 231 (330)
T ss_pred C--chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 1 3579999999999999999999999999999999999999999999999864 999999999997 67789999875
Q ss_pred C
Q 015591 404 F 404 (404)
Q Consensus 404 ~ 404 (404)
+
T Consensus 232 m 232 (330)
T PRK15093 232 L 232 (330)
T ss_pred E
Confidence 3
No 203
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-41 Score=334.98 Aligned_cols=178 Identities=23% Similarity=0.365 Sum_probs=156.3
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhhcceeEEeecCCCCCCCCCH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.. ...++.++|++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 899999999999999999999999999999998764 6999999987531 2346789999999889999999
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
+||+.|+.. ....+.++++++.+++.+..++.. .+||||||||++|||||+.+|++|||||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999998632 112356788999999987777664 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 362 DARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 362 D~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+.++..+.+.|++++++ |+|+|++||+++ ++...+|++++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~ 201 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVV 201 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEE
Confidence 999999999999999765 899999999996 78899999875
No 204
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=5.2e-41 Score=322.75 Aligned_cols=212 Identities=19% Similarity=0.264 Sum_probs=169.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|...-+ ....+.+++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--CCEEEECCEECC
Confidence 889999998742100 00001246999999999999999999999999999999999998764 599999998753
Q ss_pred h---hhhcceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCC
Q 015591 259 Q---ETFARVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LS 332 (404)
. ...++.++|++|++. +.+..|+.+++.+...... ........+.++++++.+++. +..+..+ ..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhcC
Confidence 2 223456999999764 4677899999988654321 112233345678899999994 5555543 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||+++++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l 223 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVM 223 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999999999764 899999999997 678889998753
No 205
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-41 Score=319.71 Aligned_cols=203 Identities=24% Similarity=0.323 Sum_probs=165.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--C-ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT--G-SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~--~-~~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 489999999763 35699999999999999999999999999999999998652 2 1369999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC----ccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI----KDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~vg~ 325 (404)
+++.. ...++.++|++|++.+++. |++||+.+....... ....+..+.++++++.+++.+. .++.
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--- 152 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--- 152 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhhhCC---
Confidence 87531 2345679999998777764 999999886433211 1122334567788888887532 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|+|++||+++ ++.+.+|+++.
T Consensus 153 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~ 226 (259)
T PRK14274 153 --ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAF 226 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999864 799999999997 68889999875
No 206
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-41 Score=320.30 Aligned_cols=203 Identities=23% Similarity=0.321 Sum_probs=165.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-c--eeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-S--MEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~--~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 488999998773 356999999999999999999999999999999999987643 1 379999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
+++.. ..+++.++|++|++.+++ .|++||+.++...+. ........+.+.++++.+++.+ ..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87531 234567999999887776 899999988654331 1122233456778888888742 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~ 221 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAF 221 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEE
Confidence 347999999999999999999999999999999999999999999999864 699999999997 78899999875
No 207
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=317.60 Aligned_cols=204 Identities=25% Similarity=0.312 Sum_probs=164.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS---MEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~---~~G~I~i~G 254 (404)
.+.++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 478889988762 3569999999999999999999999999999999999876532 369999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC----CCccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----GIKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~vg~ 325 (404)
.++.. ..+++.++|++|++.+++.+|+.||+.+....... ...+...+.+++.++.+++. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGI--RDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87531 23466799999998888889999999876432211 11222334566667766653 223433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|+++.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~i~~ 219 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMH-QAARVSDTTSF 219 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEE
Confidence 34799999999999999999999999999999999999999999999986 4799999999997 67888999875
No 208
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.6e-41 Score=336.20 Aligned_cols=182 Identities=25% Similarity=0.371 Sum_probs=158.0
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhhcceeEEeecCCCCCCCCCH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD--EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 999999999999999999999999999999998764 5999999987531 1345679999999888899999
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
+||+.|+.... ...+..+.++++++.++|.+..++.. .+||||||||++|||||+.+|++|||||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875321 12233456889999999988777764 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 362 DARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 362 D~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+.++..+.+.|++++++ |+|||++||+++ ++...+|++++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~ 204 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVV 204 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 999999999999999765 899999999997 68889999875
No 209
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-41 Score=318.14 Aligned_cols=207 Identities=23% Similarity=0.333 Sum_probs=163.4
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--TG-SMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G~ 255 (404)
-+++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+.+ +. +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 46778887662 3569999999999999999999999999999999999865 21 24799999998
Q ss_pred cCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 256 PKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 256 ~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
++.. ...++.++|++|++.+++. |++||+.+....+.. ........+.+.++++.+++.+........+ +.+
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLKDS-AFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhhcC-hhh
Confidence 6532 1346779999998777765 999999886433211 1112233456778899999864211111111 347
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||+++ ++.+.+|+++.
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~ 220 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAF 220 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEE
Confidence 99999999999999999999999999999999999999999999986 5899999999997 67888999875
No 210
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-41 Score=308.02 Aligned_cols=200 Identities=27% Similarity=0.380 Sum_probs=165.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||+-.| ++.++|++|||++++||+++|+|+|||||||||++|+|+.++. +|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~--~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR--SGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEECCeecC
Confidence 6677777655 5678999999999999999999999999999999999988764 699999999864
Q ss_pred h----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-CCCCccccccCCCCCCCCH
Q 015591 259 Q----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-LDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 259 ~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~vg~~~~~~LSg 333 (404)
. +..++.++||||....|+.+||+|||..++..+... .......+++.+.+- |.+..+..-| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~----~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK----EAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccccc----ccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 3 445778999999999999999999999987544321 111222566776653 4444455433 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||.++|||||+.+|++|+|||||.||-|.-.++|.+.|++++++ |.||+++.++.. ...++.|+..+
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yv 209 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYV 209 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEE
Confidence 9999999999999999999999999999999999999999999965 889999999886 57788888654
No 211
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-41 Score=350.44 Aligned_cols=205 Identities=24% Similarity=0.295 Sum_probs=171.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC--ccEEEECCEEC
Confidence 388899998762 356999999999999999999999999999999999998764 59999999875
Q ss_pred ch---h-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhh----cCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 258 VQ---E-TFARVSGYCEQTDIHSPQITVEESVIFSAWLR----LAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 258 ~~---~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
.. . ..++.++|++|++.+++.+||+||+.++.... ........+..+.++++++.+++.+..++.++
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA----- 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----
Confidence 32 1 12456999999988888999999998754211 00001122334668899999999877777653
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~ 217 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTV 217 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 79999999999999999999999999999999999999999999999877999999999986 67788999875
No 212
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-41 Score=315.02 Aligned_cols=187 Identities=26% Similarity=0.387 Sum_probs=159.9
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-hhhcceeEEeecCCCCCCCCCHHHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~--~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD--SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 899999999999999999999999999999999988764 5999999987542 1235679999999888888999999
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
+.+...... ....+..+.+.++++.+++.+..++.+ ..||+|||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKRK---VDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 988643321 122334456778899999987777664 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 365 AAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 365 ~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+++.+.+.|++++++ |+|+|++||++. ++.+.+|+++.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~ 202 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAI 202 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 999999999998764 999999999996 67888999875
No 213
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=317.08 Aligned_cols=208 Identities=23% Similarity=0.276 Sum_probs=164.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS---MEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~---~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+.++.. .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 378899998762 3569999999999999999999999999999999999877631 259999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
.++.. ...++.++|++|++.+++ .|++||+.+....+... ......+.++++++.+++.+........+ +.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFP-KSIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNLHKS-GL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCc-CcHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHhhCC-cc
Confidence 87531 244678999999887776 49999999875432111 11122345667777777653211111111 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|+++++
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l 219 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFL 219 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEE
Confidence 799999999999999999999999999999999999999999999985 6899999999997 677889998753
No 214
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.9e-41 Score=348.33 Aligned_cols=207 Identities=21% Similarity=0.334 Sum_probs=169.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.| +++++|+||||++++||+++|+||||||||||+++|+|+.++++.+|+|.++|+++.
T Consensus 2 l~i~~l~~~~-------------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTF-------------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEe-------------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 5778888866 235699999999999999999999999999999999998775334699999998753
Q ss_pred h----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc-cCChhhHHHHHHHHHHHcCCCCCc-cccccCCCCCCCC
Q 015591 259 Q----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIK-DSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~vg~~~~~~LS 332 (404)
. ...++.++||+|++.+++.+||+||+.++....... ........+.++++++.+++.+.. ++.+ .+||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 2 113456999999988888999999998864322100 012223345688999999997654 3443 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+++.+
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l 214 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVI 214 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999877999999999987 678889998753
No 215
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-41 Score=301.51 Aligned_cols=165 Identities=28% Similarity=0.441 Sum_probs=145.6
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD--SGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEEccc
Confidence 5677777652 346999999999999999999999999999999999988764 6999999987532
Q ss_pred --hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 260 --ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 260 --~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
...++.++|++|++.+++..|++||+. ||+||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 244677999999988888889999873 8999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|++|||||+.+|++|+|||||++||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|+++.+
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l 168 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAIL 168 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999877899999999987 677889998753
No 216
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-41 Score=340.65 Aligned_cols=199 Identities=23% Similarity=0.357 Sum_probs=168.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|+|+. ...++|+|+||++++||.+||+|+||||||||+++|+|.+++. +|+|.++|.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~--~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ--QGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC--CCeeeECCcCh
Confidence 6999999998853 3457999999999999999999999999999999999988875 59999999874
Q ss_pred ---chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-------CCccccccCCC
Q 015591 258 ---VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-------GIKDSLVGIPG 327 (404)
Q Consensus 258 ---~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~vg~~~ 327 (404)
++..+++.++++.| ..|++..|+|+|+.++.... .++.+.++++.+||. +..++.+|+.|
T Consensus 403 ~~l~~~~~~e~i~vl~Q-r~hlF~~Tlr~NL~lA~~~A---------sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G 472 (573)
T COG4987 403 ASLDEQALRETISVLTQ-RVHLFSGTLRDNLRLANPDA---------SDEELWAALQQVGLEKLLESAPDGLNTWLGEGG 472 (573)
T ss_pred hhCChhhHHHHHhhhcc-chHHHHHHHHHHHhhcCCCC---------CHHHHHHHHHHcCHHHHHHhChhhhhchhccCC
Confidence 33457788999999 66778889999999864322 123445556666554 45677888876
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++|||+|++|.++++|||||.|||+.++++|++.|.+.+ +|+|+|++||+.. -.+.||+|++
T Consensus 473 -~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~--~le~~drIiv 544 (573)
T COG4987 473 -RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLR--GLERMDRIIV 544 (573)
T ss_pred -CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccc--cHhhcCEEEE
Confidence 4699999999999999999999999999999999999999999999876 5999999999986 4889999876
No 217
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-41 Score=322.55 Aligned_cols=205 Identities=24% Similarity=0.297 Sum_probs=169.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+. .....+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF--EGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CCEEEECCEEC
Confidence 4889999998741 01235999999999999999999999999999999999998764 59999999875
Q ss_pred ch---hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.++|++|++. .++..||.||+.++..... ....+..+.++++++.+++.+..++.. ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG---IPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcC---CCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 32 245678999999863 5778899999988653221 223333456789999999987766653 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +. .+|+++++
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l 213 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVM 213 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEE
Confidence 9999999999999999999999999999999999999999999865 9999999999974 44 69998753
No 218
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=319.71 Aligned_cols=209 Identities=24% Similarity=0.331 Sum_probs=166.3
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIG 253 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~ 253 (404)
..++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3589999999773 356999999999999999999999999999999999986631 257999999
Q ss_pred CccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCC
Q 015591 254 GYPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328 (404)
Q Consensus 254 G~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~ 328 (404)
|.++.. ..+++.++|++|+..+++. |++||+.+....... .......+.++++++.+++.+........+ +
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLHEN-A 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHhhCC-c
Confidence 987531 2356789999998777765 999999886533211 112223355778888888753211111111 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|+++++
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 240 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFM 240 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEE
Confidence 47999999999999999999999999999999999999999999999975 799999999986 678899998753
No 219
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-41 Score=347.80 Aligned_cols=205 Identities=28% Similarity=0.375 Sum_probs=171.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCEEC
Confidence 378899998763 356999999999999999999999999999999999998764 59999999875
Q ss_pred ch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ..+++.++|++|++.+++.+||+||+.++............+..+.++++++.+++.+..++.+ .+|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 31 2345679999999888889999999998642111011122333456889999999987666654 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|+++.
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~ 212 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITV 212 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999877999999999997 67888999875
No 220
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=316.74 Aligned_cols=207 Identities=27% Similarity=0.320 Sum_probs=164.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS---MEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~---~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+..+.+ .+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 488999998763 3569999999999999999999999999999999999754321 369999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
+++.. ...++.++|++|++.+++ .||+||+.+....+.. .......+.+.++++.+++.+........+ ..
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS-AL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC-hh
Confidence 87532 234567999999887776 5999999987543321 112233456778888887743211111111 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||+|||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~ 220 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGF 220 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEE
Confidence 7999999999999999999999999999999999999999999999875 699999999987 57788999875
No 221
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.2e-41 Score=309.01 Aligned_cols=201 Identities=23% Similarity=0.382 Sum_probs=181.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
+++++|+++ ++++.+++|+||+++||++.+++|||||||||.+++|.|+..++ +|+|.++|.++.
T Consensus 3 L~ie~vtK~-------------Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~--~G~I~~~g~~~~ 67 (300)
T COG4152 3 LEIEGVTKS-------------FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT--EGEITWNGGPLS 67 (300)
T ss_pred eEEecchhc-------------cCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc--CceEEEcCcchh
Confidence 566666654 46788999999999999999999999999999999999998874 599999999876
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
. ..+.+|||.|.+..+++.+||.|.|.|.+.+.. ++.++..+.++.+++++++.+...+.+ .+||.|++|+
T Consensus 68 ~-~~~~rIGyLPEERGLy~k~tv~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQK 138 (300)
T COG4152 68 Q-EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQK 138 (300)
T ss_pred h-hhhhhcccChhhhccCccCcHHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHH
Confidence 3 445679999999999999999999999998875 455677788999999999998887775 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+.+-.+++++|+++|||||+|||||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||+++.+
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL 203 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLML 203 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhhee
Confidence 99999999999999999999999999999999999999999999999999997 799999999753
No 222
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=317.68 Aligned_cols=209 Identities=22% Similarity=0.291 Sum_probs=167.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. ..+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 488999999763 346999999999999999999999999999999999987753 1369999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
+++.. ...++.++|++|+..+++ .|++||+.+....... ....+..+.+.++++.+++.+..+.....+ +.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHKS-AL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcCC-cc
Confidence 87521 234667999999877766 8999999886432210 112233456788888888754222222222 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|+++++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l 224 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFF 224 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEE
Confidence 7999999999999999999999999999999999999999999999865 4899999999996 688999998753
No 223
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=319.84 Aligned_cols=208 Identities=23% Similarity=0.293 Sum_probs=167.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.+.++||++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 589999999873 357999999999999999999999999999999999987652 3479999999
Q ss_pred ccCch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 255 YPKVQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 255 ~~~~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
.++.. ...++.++|++|++.+++ .|++||+.+...... .....+..+.+.++++.+++.+..+..... .+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLSD-SPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhhC-Cccc
Confidence 87532 234677999999877776 899999988643221 112223334567788888886432221111 1357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.+.+|+++++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l 235 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALF 235 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999875 589999999997 688899998753
No 224
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=316.04 Aligned_cols=203 Identities=22% Similarity=0.286 Sum_probs=163.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--C-ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT--G-SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~--~-~~~G~I~i~G 254 (404)
.++++|+++.|. .+++|+|+||++++||+++|+|+||||||||+++|+|+.++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 378999998763 35699999999999999999999999999999999998752 1 2479999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
+++.. ...++.++|++|++.+++ .|++||+.+....... .......+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87531 234667999999877665 7999999886432211 111222355778888888842 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.+|+++.
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~ 218 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQ-QAGRISDQTAF 218 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHH-HHHhhcCEEEE
Confidence 34799999999999999999999999999999999999999999999986 4799999999997 67888999865
No 225
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=320.82 Aligned_cols=206 Identities=24% Similarity=0.380 Sum_probs=165.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEh
Confidence 588999998773 1356999999999999999999999999999999999998764 69999999876
Q ss_pred chhhhcceeEEeecCCCCC--CCCCHHHHHHHHhhhhc-CccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 VQETFARVSGYCEQTDIHS--PQITVEESVIFSAWLRL-APEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~--~~~Tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
.....++.++|++|++.+. ...++++++.++..... ..........+.++++++.+++.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999986542 34578998876421100 000111223455778899999987777764 369999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~ 214 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVM 214 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999877999999999986 67889998753
No 226
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.9e-40 Score=317.11 Aligned_cols=203 Identities=25% Similarity=0.306 Sum_probs=164.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc-
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP- 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~- 256 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD--AGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCccc
Confidence 488999998763 346999999999999999999999999999999999998764 5999999986
Q ss_pred ----Cch---hh----hcceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-Ccccc
Q 015591 257 ----KVQ---ET----FARVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSL 322 (404)
Q Consensus 257 ----~~~---~~----~~~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 322 (404)
+.. .. .++.++|++|+.. +.+.+|+.||+.+....... ....+..+.+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGA--RHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 431 11 2456999999863 56778999999764322111 111233456788999999863 44544
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccc
Q 015591 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 323 vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~ 401 (404)
. ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|++
T Consensus 149 ~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 P-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred C-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3 479999999999999999999999999999999999999999999998764 899999999997 577789998
Q ss_pred cc
Q 015591 402 KQ 403 (404)
Q Consensus 402 l~ 403 (404)
+.
T Consensus 223 ~~ 224 (258)
T PRK11701 223 LV 224 (258)
T ss_pred EE
Confidence 75
No 227
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.8e-41 Score=353.90 Aligned_cols=200 Identities=23% Similarity=0.346 Sum_probs=164.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|++|.|+. +++.+|+|+|+++++|+.++|+||||||||||+++|+|+++|. +|+|.+||.++
T Consensus 313 ~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~--~G~i~~~g~~~ 379 (569)
T PRK10789 313 ELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS--EGDIRFHDIPL 379 (569)
T ss_pred cEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCEEEECCEEH
Confidence 5899999998742 2346999999999999999999999999999999999998874 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~~ 327 (404)
. ...+++.++||+|++.++ ..|++||+.++.. +.+. +.++++++.. .+++..|+.+|+.|
T Consensus 380 ~~~~~~~~~~~i~~v~q~~~lf-~~ti~~Ni~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g 449 (569)
T PRK10789 380 TKLQLDSWRSRLAVVSQTPFLF-SDTVANNIALGRP-----DATQ----QEIEHVARLASVHDDILRLPQGYDTEVGERG 449 (569)
T ss_pred hhCCHHHHHhheEEEccCCeec-cccHHHHHhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCCC
Confidence 3 346678899999977655 5699999988531 1111 1223333333 34566788888765
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
. .||||||||++|||||+++|++||||||||+||+++++.+++.|+++. +|+|+|++||+++ ..+.+|+++.+
T Consensus 450 ~-~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l 522 (569)
T PRK10789 450 V-MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVM 522 (569)
T ss_pred C-cCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEE
Confidence 4 699999999999999999999999999999999999999999999875 6899999999986 46779998753
No 228
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.6e-41 Score=317.99 Aligned_cols=203 Identities=22% Similarity=0.381 Sum_probs=153.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|.. +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE--NGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCeehH
Confidence 357788876631 1346999999999999999999999999999999999998764 699999998643
Q ss_pred ---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc--CCCCCccccccCCCCCCCCH
Q 015591 259 ---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI--ELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 259 ---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~vg~~~~~~LSg 333 (404)
...+++.++|++|++.++ ..||+||+.+..................+.++++.+ ++....+.. +.+|||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~LSg 141 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLF-NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GAGLSG 141 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhc-cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CCcCCH
Confidence 234567799999987655 579999998753210000000000111123344433 333333332 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ +.+|+++.
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~ 208 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIV 208 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEE
Confidence 99999999999999999999999999999999999999999986 4899999999997 45 56999875
No 229
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.3e-40 Score=315.94 Aligned_cols=201 Identities=21% Similarity=0.273 Sum_probs=163.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECCc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG--SMEGEIKIGGY 255 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G~ 255 (404)
.++++|+++.| ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQA--------------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEe--------------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 58899999865 135999999999999999999999999999999999987761 14699999998
Q ss_pred cCchhhh-cceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC---CccccccCCCCC
Q 015591 256 PKVQETF-ARVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG---IKDSLVGIPGVN 329 (404)
Q Consensus 256 ~~~~~~~-~~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~vg~~~~~ 329 (404)
++..... ++.++|++|++. +.+..|+.+++.+.+.... .. ...+.+.++++.+++.+ ..++. +.
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KP--ADDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CC--hHHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 7643222 357999999864 4456799999876532221 11 12356788999999875 23443 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~ 213 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAV 213 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEE
Confidence 79999999999999999999999999999999999999999999998764 899999999997 57788999865
No 230
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=326.12 Aligned_cols=210 Identities=25% Similarity=0.322 Sum_probs=169.7
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CceeeEEEEC
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT---GSMEGEIKIG 253 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~ 253 (404)
..++++|+++.|.. +.+.+|+|+||+|++||++||+|+||||||||+++|+|+..+ .+.+|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 35999999998742 234699999999999999999999999999999999998653 1346999999
Q ss_pred CccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCC-hhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 254 GYPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN-SKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 254 G~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
|.++.. ..+++.++||+|++.++ ..|++||+.|+.... ... .....+.+.++++.+++.+..++.++..+
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKAG 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccC-CCcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCc
Confidence 998642 24567899999987765 589999999864321 111 12223446778888887544444555543
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||+++ .+.+.+|+++++
T Consensus 224 -~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl 297 (329)
T PRK14257 224 -NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFF 297 (329)
T ss_pred -ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999875 799999999997 577889999864
No 231
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=319.59 Aligned_cols=200 Identities=26% Similarity=0.338 Sum_probs=163.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT---GSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 589999999773 35699999999999999999999999999999999998753 13469999999
Q ss_pred ccCc-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKV-----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++. ....++.++|++|+..+++. |++||+.+....+. ... ...+.++++++.+++.+ ..++.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 8752 12356789999998776664 99999998654322 111 23456788898888753 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|+++
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~ 250 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTA 250 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEE
Confidence 347999999999999999999999999999999999999999999999975 489999999987 6778899853
No 232
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=301.80 Aligned_cols=166 Identities=28% Similarity=0.413 Sum_probs=146.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 5677777652 35699999999999999999999999999999999998876 46999999987532
Q ss_pred -----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 260 -----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 260 -----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
...++.++|++|++.+++..|++||+.+. ||+|
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 34567899999988888889999987642 8999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|+++.
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 173 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVV 173 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 999999999999999999999999999999999999999999876 899999999986 67778999875
No 233
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.1e-40 Score=352.66 Aligned_cols=200 Identities=24% Similarity=0.348 Sum_probs=164.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|.|+.. .++.+|+|+||+++|||.++|+|+||||||||+++|+|+++|. +|+|.+||.++
T Consensus 337 ~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~--~G~I~i~g~~i 404 (576)
T TIGR02204 337 EIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ--SGRILLDGVDL 404 (576)
T ss_pred eEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCEEEECCEEH
Confidence 59999999988521 1256999999999999999999999999999999999998874 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-------CCCCccccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDGIKDSLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~~ 327 (404)
. ...+++.++|++|++. +++.|++||+.++.. +.+ .+.+.++++..+ +++..|+.+|+.|
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~-lf~~Ti~~Ni~~~~~-----~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g 474 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPV-LFAASVMENIRYGRP-----DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGERG 474 (576)
T ss_pred HhcCHHHHHHhceEEccCCc-cccccHHHHHhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCC
Confidence 3 3567788999999665 567799999988531 111 122334444443 3445678888765
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++||||++++|++|+||||||+||+.+++.+++.|+++. +++|+|++||+++ ....+|+++.
T Consensus 475 -~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~ 546 (576)
T TIGR02204 475 -VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVV 546 (576)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999985 5899999999985 5678999875
No 234
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=7.1e-41 Score=381.27 Aligned_cols=202 Identities=33% Similarity=0.519 Sum_probs=175.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
++++|+|||+.++|||+++|+||||||||||||+|+|+.++. ..+|+|.+||++......++.++||+|+|.|++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 467999999999999999999999999999999999987653 3479999999886543446789999999999999999
Q ss_pred HHHHHHHhhhhcCc-------cCChhhH------------------------HHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 282 EESVIFSAWLRLAP-------EINSKTK------------------------AEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 282 ~e~l~~~~~~~~~~-------~~~~~~~------------------------~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
+|++.|++.++... +....++ ...++++++.+||.+++|+.+|....++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999998765321 1111111 1235789999999999999999877789
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+++++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL 411 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILL 411 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEe
Confidence 999999999999999999999999999999999999999999999976 58999999999998999999999864
No 235
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=317.99 Aligned_cols=203 Identities=25% Similarity=0.320 Sum_probs=162.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--T-GSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.. + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 489999999773 3569999999999999999999999999999999999753 1 13569999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++.. ...++.++|++|++.+++ .|++||+.+...... ........+.+.+.++.+++.+ ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFP-KSIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87532 234667999999887776 499999988643221 1111222345677788887742 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++.
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~ 235 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAF 235 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999864 689999999986 68889999875
No 236
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.7e-40 Score=346.60 Aligned_cols=198 Identities=22% Similarity=0.354 Sum_probs=170.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEC
Confidence 488999999773 356999999999999999999999999999999999998764 59999999875
Q ss_pred ch---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. .. .++.++|++|++.+++.+||+||+.+.... .....+.++++++.+++.+..++.+ .+|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 32 11 234689999998888999999999885321 1223456788999999987777765 37999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~ 212 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISV 212 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999877999999999997 67889999875
No 237
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-40 Score=313.32 Aligned_cols=203 Identities=24% Similarity=0.317 Sum_probs=162.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--TG-SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.+ +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 488999998763 3569999999999999999999999999999999999754 21 1369999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++.. ...++.++|++|++.+++ .|++||+.+....+... ......+.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVK--DKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87531 234567999999877776 79999999865432211 11112344566777777642 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|+++.
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~ 219 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAF 219 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999875 589999999997 68889999875
No 238
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.7e-39 Score=371.45 Aligned_cols=204 Identities=24% Similarity=0.350 Sum_probs=176.6
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||++.|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt--sG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT--SGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC--ceEEEECCEE
Confidence 46899999997731 2357999999999999999999999999999999999998764 6999999987
Q ss_pred Cch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 257 KVQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 257 ~~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
+.. ...++.+|||+|++.+++.+||+||+.|.+.++. ....+.++.++++++.++|.+..++.+ ++||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 642 2356789999999999999999999999876543 222334567889999999998888775 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++ +|+|||++||+++ ++..++|+++.
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~i 1132 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAI 1132 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999985 6999999999997 67888999865
No 239
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.6e-40 Score=351.95 Aligned_cols=200 Identities=26% Similarity=0.332 Sum_probs=162.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|++|.|+. ++++|+|+|+++++||.+||+||||||||||+++|+|+++|. +|+|.+||.+.
T Consensus 334 ~i~~~~v~~~y~~------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~~ 399 (585)
T TIGR01192 334 AVEFRHITFEFAN------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT--VGQILIDGIDI 399 (585)
T ss_pred eEEEEEEEEECCC------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC--CCEEEECCEEh
Confidence 5999999998742 245899999999999999999999999999999999998874 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHH-----HHHHHHHHcCCCCCccccccCCCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAE-----FVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
. ...+++.++||+|++.++ ..|++||+.++.. ..+.++..+ .+++.+. .+++..|+.+|+.+ .
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf-~~ti~~Ni~~~~~-----~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~~~-~ 470 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLF-NRSIRENIRLGRE-----GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGERG-N 470 (585)
T ss_pred hhCCHHHHHhheEEEccCCccC-cccHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hccccccchhcCCC-C
Confidence 3 345778899999977655 5799999988632 111111111 1222222 34556678888765 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++|||||+++|++||||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~ 541 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLF 541 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEE
Confidence 699999999999999999999999999999999999999999999875 5899999999996 3467999875
No 240
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-40 Score=317.92 Aligned_cols=204 Identities=21% Similarity=0.251 Sum_probs=163.6
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKI 252 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i 252 (404)
+..++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+..+. +.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 34689999999763 356999999999999999999999999999999999986532 24699999
Q ss_pred CCccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----Cccccc
Q 015591 253 GGYPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLV 323 (404)
Q Consensus 253 ~G~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~v 323 (404)
+|+++.. ..+++.++|++|+..+++ .|+.||+.+....+. .. ....+.+++.++.+++.. ..++.
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK- 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC-
Confidence 9987531 234678999999877665 499999988643321 11 112244566777777632 22332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 324 g~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 159 ----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~ 232 (274)
T PRK14265 159 ----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAF 232 (274)
T ss_pred ----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999874 799999999997 68889999875
Q ss_pred C
Q 015591 404 F 404 (404)
Q Consensus 404 ~ 404 (404)
+
T Consensus 233 l 233 (274)
T PRK14265 233 F 233 (274)
T ss_pred E
Confidence 3
No 241
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-40 Score=315.53 Aligned_cols=207 Identities=21% Similarity=0.254 Sum_probs=166.4
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIG 253 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~ 253 (404)
..+.+++++++| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.+|. +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 347778887765 3467999999999999999999999999999999999987651 247999999
Q ss_pred CccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCC
Q 015591 254 GYPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328 (404)
Q Consensus 254 G~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~ 328 (404)
|+++.. ..+++.++|++|++.++ .+|++||+.++...+. . .....+.++++++.+++.+..+...+. ..
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Cc
Confidence 987531 23466799999987765 6999999998754321 1 122345678889988885432222222 23
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ +++|+|++||+++ ++.+.+|+++++
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l 221 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFF 221 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 5799999999999999999999999999999999999999999999986 4799999999997 688899998753
No 242
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-40 Score=320.33 Aligned_cols=203 Identities=23% Similarity=0.313 Sum_probs=163.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--TG-SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G 254 (404)
.+.++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ +. +.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 588999998763 3469999999999999999999999999999999999753 21 2469999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC----CCccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----GIKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~vg~ 325 (404)
.++.. ...++.++|++|++.+++ .|++||+.+....+... ......+.+.++++.+++. +..++.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFP-KSIFDNIAYGPRLHGIN--DKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCc-cCHHHHHHhHHHhcCCC--cHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87531 134667999999887776 49999999875332111 1122345567788888764 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++.
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~ 253 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMF 253 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999864 689999999997 67888999875
No 243
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-40 Score=316.76 Aligned_cols=205 Identities=21% Similarity=0.261 Sum_probs=162.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++||++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+..+. +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 488999998763 356999999999999999999999999999999999986421 2469999999
Q ss_pred ccCc-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKV-----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
.++. ....++.++|++|++.+++ .|++||+.+....+. .. ....+.++++++.+++.+..+.....+ +.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQS-GL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCC-cc
Confidence 8652 1234667999999877666 599999988653321 11 122345566777777642111111111 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++.
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~ 222 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAF 222 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEE
Confidence 7999999999999999999999999999999999999999999999975 589999999987 78999999875
No 244
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-41 Score=314.97 Aligned_cols=203 Identities=24% Similarity=0.342 Sum_probs=154.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc-
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV- 258 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~- 258 (404)
+++|+++.|+. .++.+++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD--SGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC--CCEEEECCEEhhh
Confidence 56778876631 1236999999999999999999999999999999999998764 699999997643
Q ss_pred --hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc--CCCCCccccccCCCCCCCCHH
Q 015591 259 --QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI--ELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 --~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~vg~~~~~~LSgG 334 (404)
....++.++|++|+..+++ .|++||+.+..................+++.++.+ ++....+.. +..||+|
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G 142 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGG 142 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHH
Confidence 2344667999999877665 79999998754211000000000111234555544 444333333 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||+++ ++. .+|+++++
T Consensus 143 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~v~~l 209 (234)
T cd03251 143 QRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TIE-NADRIVVL 209 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHh-hCCEEEEe
Confidence 9999999999999999999999999999999999999999986 4899999999997 454 49998753
No 245
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=344.81 Aligned_cols=194 Identities=24% Similarity=0.324 Sum_probs=162.7
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch----hhhcceeEEeecCCCCCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----ETFARVSGYCEQTDIHSPQ 278 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~g~v~Q~~~~~~~ 278 (404)
++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|+++.. ...++.++|++|+..+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 467999999999999999999999999999999999988764 6999999987532 2235679999998888889
Q ss_pred CCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 015591 279 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPt 358 (404)
+||+||+.++............+..+.++++++.+++.+..++.+ .+||||||||++|||||+.+|++|||||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 999999987642110100122233456889999999987777664 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 359 TGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 359 sgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||+.++..+.+.|++++++|+|||++||+++ ++...||+++++
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l 207 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITIL 207 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 999999999999999999877999999999996 678899998753
No 246
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2e-40 Score=311.85 Aligned_cols=189 Identities=27% Similarity=0.337 Sum_probs=155.6
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECCccCchhhh-cceeEEeecCCC--CCCCCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG--SMEGEIKIGGYPKVQETF-ARVSGYCEQTDI--HSPQIT 280 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G~~~~~~~~-~~~~g~v~Q~~~--~~~~~T 280 (404)
+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999987751 136999999987643223 357999999864 456789
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC---CccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG---IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 357 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEP 357 (404)
+.||+.+....... ......+.+.++++.+++.+ ..++.+ ..||+|||||++|||||+.+|++||||||
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999876432211 11233456889999999973 344443 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 358 TTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 358 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 198 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAV 198 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999764 899999999997 68889999875
No 247
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.4e-40 Score=311.76 Aligned_cols=206 Identities=23% Similarity=0.358 Sum_probs=160.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~ 78 (226)
T cd03248 11 IVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ--GGQVLLDGKPI 78 (226)
T ss_pred eEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CcEEEECCCch
Confidence 58999999987420 1235999999999999999999999999999999999998764 59999999864
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc--CCCCCccccccCCCCCCCC
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI--ELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~vg~~~~~~LS 332 (404)
.. ...++.++|++|+..+++ .|++||+.++.................++++++.+ ++.+..+.. +..||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~LS 152 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GSQLS 152 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CCcCC
Confidence 32 234567999999876654 69999998754211000000111122356777777 565554444 34799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++ +.+|+++.+
T Consensus 153 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l 221 (226)
T cd03248 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVL 221 (226)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEe
Confidence 9999999999999999999999999999999999999999999864 699999999997 45 459998753
No 248
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-40 Score=316.13 Aligned_cols=203 Identities=23% Similarity=0.269 Sum_probs=161.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--T-GSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 489999999773 2469999999999999999999999999999999999865 1 12569999999
Q ss_pred ccCc-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC----CCccccccC
Q 015591 255 YPKV-----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----GIKDSLVGI 325 (404)
Q Consensus 255 ~~~~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~vg~ 325 (404)
.++. ...+++.++|++|++.+++ .|++||+.++...+.. .......+.+.+.++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGI--KDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 8753 1234677999999877666 5999999986532211 11122234456667666542 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~ 238 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAF 238 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999875 799999999987 67889999875
No 249
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.8e-40 Score=309.65 Aligned_cols=200 Identities=24% Similarity=0.387 Sum_probs=158.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|.. .++.+|+|+||++++|++++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT--SGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCeEEECCEEhH
Confidence 678888886631 1246999999999999999999999999999999999987764 599999998653
Q ss_pred h---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcccccc------CCCCC
Q 015591 259 Q---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG------IPGVN 329 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg------~~~~~ 329 (404)
. ...++.++|++|++.+++ .|++||+.+.... . . .+.+.++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~-~---~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----A-D---DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----C-C---HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 234567999999877665 6999999874211 1 1 2234567777777654444210 01134
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+ +.+|+++.+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~-~~~d~v~~l 211 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPS-LL-DLVDRIIVM 211 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEE
Confidence 7999999999999999999999999999999999999999999999875 489999999997 34 799998753
No 250
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=6.8e-40 Score=315.21 Aligned_cols=211 Identities=24% Similarity=0.322 Sum_probs=167.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|.... .. + ...++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~-~~--~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG-LS--G-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc-cc--c-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 78899998774100 00 0 00135799999999999999999999999999999999998776 4699999998653
Q ss_pred h------hhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCC
Q 015591 259 Q------ETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVN 329 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~ 329 (404)
. ...++.++|++|+. .+.+..|+.||+.+..... .........+.++++++.+++. ...++.. .
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----P 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----c
Confidence 2 12466799999986 3567789999997653211 1122334455788999999986 4555543 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||+++ ++.+.+|+++.
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~ 224 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMV 224 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEE
Confidence 79999999999999999999999999999999999999999999998764 899999999987 67788999875
No 251
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.7e-40 Score=299.29 Aligned_cols=166 Identities=23% Similarity=0.433 Sum_probs=145.7
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.| +|+++||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 5 l~~~~l~~~~-----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 65 (182)
T cd03215 5 LEVRGLSVKG-----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA--SGEITLDGKPVT 65 (182)
T ss_pred EEEeccEEEe-----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECC
Confidence 7778887632 899999999999999999999999999999999998764 599999998753
Q ss_pred h----hhhcceeEEeecCC---CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 259 Q----ETFARVSGYCEQTD---IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 259 ~----~~~~~~~g~v~Q~~---~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
. ...++.++|++|+. .+++.+|++||+.+... |
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------L 105 (182)
T cd03215 66 RRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------L 105 (182)
T ss_pred ccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------c
Confidence 2 23456799999974 46788999999976420 8
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++
T Consensus 106 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l 177 (182)
T cd03215 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVM 177 (182)
T ss_pred CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEe
Confidence 999999999999999999999999999999999999999999998767999999999986 788899998753
No 252
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.2e-39 Score=310.26 Aligned_cols=208 Identities=24% Similarity=0.323 Sum_probs=163.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ ++.+|+||||++++||+++|+|+||||||||+++|+|+....+.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 488999998762 3569999999999999999999999999999999999731113469999999875
Q ss_pred ch---hhhcc-eeEEeecCCCCCCCCCHHHHHHHHhhhhcC----ccCChhhHHHHHHHHHHHcCCC-CCccccccCCCC
Q 015591 258 VQ---ETFAR-VSGYCEQTDIHSPQITVEESVIFSAWLRLA----PEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 258 ~~---~~~~~-~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
.. ...++ .++|++|++.+++.+|+.+++.+....... ......+..+.+.++++.+++. ...++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 32 12222 478999998888889999999875432110 0111112235677889999986 34455432
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHh-cccccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEA-FDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~-fd~~l~ 403 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~ 224 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHV 224 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEE
Confidence 249999999999999999999999999999999999999999999998877999999999986 35454 798865
No 253
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-40 Score=314.78 Aligned_cols=213 Identities=24% Similarity=0.327 Sum_probs=173.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC-C-C-ceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT-T-G-SMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~-~-~-~~~G~I~i~G~ 255 (404)
++++||+.+|... .+..++++||||++++||++||+|+|||||||+.+.|+|+.+ + . ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 5678887776431 123579999999999999999999999999999999999876 3 2 35689999999
Q ss_pred cCc---hhh----hcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 256 PKV---QET----FARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 256 ~~~---~~~----~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
++. .+. ..+.+++++|++ .+.|.+||.+.+.-....+.... .+++..+++.++++.+++++-....-.+|
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP 151 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSYP 151 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhCC
Confidence 642 221 235799999985 56789999998877655432111 24455678899999999987544444444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
++||||||||+.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.|+|+||||+. -+.+++|++.++
T Consensus 152 --helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VM 227 (316)
T COG0444 152 --HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVM 227 (316)
T ss_pred --cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEE
Confidence 68999999999999999999999999999999999999999999999986 5999999999997 699999998763
No 254
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=7.5e-40 Score=312.02 Aligned_cols=203 Identities=25% Similarity=0.289 Sum_probs=162.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc-
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP- 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~- 256 (404)
.++++|+++.|+ ++.+|+|+||++++|++++|+||||||||||+++|+|+.++. +|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEEecccc
Confidence 378899988763 346899999999999999999999999999999999998764 6999999875
Q ss_pred ----Cch---h----hhcceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCcccc
Q 015591 257 ----KVQ---E----TFARVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSL 322 (404)
Q Consensus 257 ----~~~---~----~~~~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~ 322 (404)
+.. . ..++.++|++|++. ..+..|+.||+.+........ ......+.+.++++.+++. ...++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGAR--HYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhccc--chHHHHHHHHHHHHHcCCChhhhhcC
Confidence 321 1 12356899999864 345679999997643211100 1112345678899999986 355554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccc
Q 015591 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 323 vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~ 401 (404)
+ ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++
T Consensus 146 ~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 P-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred c-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 3 479999999999999999999999999999999999999999999998754 899999999987 677889998
Q ss_pred cc
Q 015591 402 KQ 403 (404)
Q Consensus 402 l~ 403 (404)
+.
T Consensus 220 ~~ 221 (253)
T TIGR02323 220 LV 221 (253)
T ss_pred EE
Confidence 75
No 255
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-39 Score=299.54 Aligned_cols=192 Identities=19% Similarity=0.270 Sum_probs=157.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|. ++.+++ +||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS--SGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCcccC
Confidence 57788888762 234555 99999999999999999999999999999988764 699999998764
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
... ++.++|++|+...++.+|++||+.+...... ..+.++++++.+++.+..++.. ..||+|||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~--------~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhcc--------cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHH
Confidence 322 3458999998777888999999988643221 1245677888888876666553 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
++||||++.+|++|+|||||+|||+.++..+.+.|++..++|+|+|++||+++ ..+..|-+.
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~~ 193 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES--SIKSAQILQ 193 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc--ccchhheec
Confidence 99999999999999999999999999999999999877667999999999986 244466543
No 256
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-40 Score=311.67 Aligned_cols=198 Identities=26% Similarity=0.400 Sum_probs=152.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. +.+.+++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ--KGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCEeH
Confidence 478889988763 1235999999999999999999999999999999999998764 59999999865
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCc-------cccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK-------DSLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~vg~~~ 327 (404)
. ...+++.++|++|++.+++ .|++||+.+..... . ...+.+.++.+++.+.. +...+..
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~~~~~~~~~-----~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 136 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFS-GTIMENIRLGRPNA-----T----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGEN- 136 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhh-hHHHHHHhccCCCC-----C----HHHHHHHHHHhChHHHHHhCcccccCHhhcC-
Confidence 3 2345677999999876665 49999998753210 1 11122223333222111 1111111
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
...||+|||||++|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||+++ ++ +.+|+++.
T Consensus 137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~ 209 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILV 209 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEE
Confidence 35799999999999999999999999999999999999999999999986 5899999999996 34 46999865
No 257
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=309.91 Aligned_cols=207 Identities=24% Similarity=0.304 Sum_probs=163.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--T-GSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 254 (404)
.++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.. + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 377888888762 3569999999999999999999999999999999999753 2 12479999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
.++.. ...++.++|++|++.+++ .|++||+.+...... ........+.+.++++.+++.+........+ ..
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFP-KSIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDKS-AL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCc-chHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhCC-cc
Confidence 87532 234677999999887776 499999987643221 1112233456778888888753211112222 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||++||+++ ++.+.+|++++
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~i~~ 217 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKYTSF 217 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCEEEE
Confidence 799999999999999999999999999999999999999999999986 4899999999997 68888998754
No 258
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2e-40 Score=313.07 Aligned_cols=203 Identities=24% Similarity=0.365 Sum_probs=151.0
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc-
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV- 258 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~- 258 (404)
+++|+++.|.. .+++++|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 ~i~~l~~~~~~----------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPS----------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT--SGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCC----------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC--CCEEEECCEehhh
Confidence 56788876631 01246999999999999999999999999999999999988764 699999998753
Q ss_pred --hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc--CCCCCccccccCCCCCCCCHH
Q 015591 259 --QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI--ELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 --~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~vg~~~~~~LSgG 334 (404)
....++.++|++|++.+++ .|++||+.+....+.............+.++++.+ ++....+.. +..||||
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~LS~G 143 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGER-----GSQLSGG 143 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccC-----CccCCHH
Confidence 2234567999999876654 69999998753211000000000000122222322 222222222 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||+++ ++. .||+++.
T Consensus 144 ~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~ 209 (238)
T cd03249 144 QKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAV 209 (238)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEE
Confidence 9999999999999999999999999999999999999999987 7999999999987 454 7999875
No 259
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=311.47 Aligned_cols=205 Identities=24% Similarity=0.271 Sum_probs=164.2
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eeeEEEE
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS---MEGEIKI 252 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~---~~G~I~i 252 (404)
+..++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++.+ .+|+|.+
T Consensus 14 ~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 44589999999773 3569999999999999999999999999999999999876422 5799999
Q ss_pred CCccCc-------hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----Cccc
Q 015591 253 GGYPKV-------QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDS 321 (404)
Q Consensus 253 ~G~~~~-------~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~ 321 (404)
+|.+.. ...+++.++|++|++.+++. |++||+.+........ ......+.+.++++.+++.+ ..++
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 157 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVK--RRSILEERVENALRNAALWDEVKDRLGD 157 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCC--hHHHHHHHHHHHHHHcCCchhhhHHHhC
Confidence 987642 12346679999998877775 9999998864322110 11122345677777777642 2233
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 322 ~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
. ...||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++
T Consensus 158 ~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i 230 (265)
T PRK14252 158 L-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYT 230 (265)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEE
Confidence 3 246999999999999999999999999999999999999999999999875 699999999997 688899998
Q ss_pred cc
Q 015591 402 KQ 403 (404)
Q Consensus 402 l~ 403 (404)
+.
T Consensus 231 ~~ 232 (265)
T PRK14252 231 AY 232 (265)
T ss_pred EE
Confidence 75
No 260
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-40 Score=333.57 Aligned_cols=206 Identities=27% Similarity=0.411 Sum_probs=180.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
-++.+|++++| +..++|+||||++++||++||+|+||||||||+|+|+|.++|+ +|+|.++|++.
T Consensus 8 ll~~~~i~K~F-------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~--~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF-------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD--SGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc-------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC--CceEEECCEEc
Confidence 37788888876 4567999999999999999999999999999999999998874 69999999875
Q ss_pred ch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhc-CccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 258 VQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL-APEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
.. +..+..|..|.|+..+.|++||.||+.++...+. ...++.+.-.+.+.++++.+++....++.++ +||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 32 3455679999999999999999999998765543 2334556667888999999998644777765 699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||||.|.|||||..+++|||||||||+|+....+.+.+.+++|+++|.+||+|||+++ |+|+.||++.++
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVl 218 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVL 218 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999997 899999998653
No 261
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=310.68 Aligned_cols=204 Identities=25% Similarity=0.318 Sum_probs=163.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc----eeeEEEEC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS----MEGEIKIG 253 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~----~~G~I~i~ 253 (404)
.+.++|+++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.++.. ..|++.++
T Consensus 10 ~i~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYI-------------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEec-------------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 38899999876 34679999999999999999999999999999999999877643 12444444
Q ss_pred CccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccCC
Q 015591 254 GYPKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGIP 326 (404)
Q Consensus 254 G~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~~ 326 (404)
|.+.. ....++.++|++|++.+++.+|++||+.+...... .....+..+.+.++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 55432 22356779999998888888999999998743221 1112333456788899888853 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||+|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+...||++++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~ 224 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAF 224 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999864 799999999986 67789999875
No 262
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.6e-39 Score=308.69 Aligned_cols=207 Identities=23% Similarity=0.317 Sum_probs=158.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++|++++|+|+||||||||+++|+|+.+..+.+|+|.++|.++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 57788888662 35699999999999999999999999999999999998421124699999998753
Q ss_pred h---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhh-hh-c-Ccc-CChhhHHHHHHHHHHHcCCC-CCccccccCCCCC
Q 015591 259 Q---ET-FARVSGYCEQTDIHSPQITVEESVIFSAW-LR-L-APE-INSKTKAEFVNEVLETIELD-GIKDSLVGIPGVN 329 (404)
Q Consensus 259 ~---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~-~~-~-~~~-~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~ 329 (404)
. .. .++.++|++|++.+++.+|+.+++.+... .+ . ... .......+.+++.++.+++. +..++.+. .
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 2 12 23568999998887777787776654321 11 0 000 11112245677888888885 34444321 2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHh-cccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEA-FDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~-fd~~l~ 403 (404)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||+++ .+... +|+++.
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~ 218 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHV 218 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEE
Confidence 69999999999999999999999999999999999999999999999877899999999986 35544 788764
No 263
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.1e-39 Score=310.88 Aligned_cols=188 Identities=26% Similarity=0.396 Sum_probs=158.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD--EGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCc--
Confidence 378899998763 356999999999999999999999999999999999998764 599999872
Q ss_pred chhhhcceeEEeecCCCCCCC--CCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQ--ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~--~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
..++|++|++.+++. .|+++++.+.. .. ..+.+.++++.+++.+..++.+ ..||+||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLRP------GT----KKEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhccc------cc----cHHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 358999998766554 47888765421 11 1234678899999987777654 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.+
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l 194 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCL 194 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999998765 899999999997 688899998753
No 264
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.6e-39 Score=371.61 Aligned_cols=204 Identities=25% Similarity=0.424 Sum_probs=177.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+. +++.+|+||||.|++||++||+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt--sG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT--SGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC--ccEEEECCEEC
Confidence 4899999998731 1356999999999999999999999999999999999998774 59999999876
Q ss_pred ch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. ...++.+|||+|++.+++.+|++|++.+.+.++. ...++.++.++++++.++|.+..|+.++ .|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHH
Confidence 32 2345679999999999999999999998776553 2233345667899999999888888764 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||+++ ++..+||+++.
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~I 2142 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAI 2142 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999877999999999997 78999999875
No 265
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4.7e-40 Score=327.27 Aligned_cols=218 Identities=25% Similarity=0.364 Sum_probs=183.0
Q ss_pred CCcccCCCCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcee
Q 015591 168 GKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME 247 (404)
Q Consensus 168 ~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~ 247 (404)
..+.+|.....+.++++++. ++ ..++++|+++||.+.+||.+||+||||||||||.|+|.|..+|. +
T Consensus 324 ~~m~LP~P~g~L~Ve~l~~~-PP----------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~--~ 390 (580)
T COG4618 324 ERMPLPAPQGALSVERLTAA-PP----------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT--S 390 (580)
T ss_pred CCCCCCCCCceeeEeeeeec-CC----------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC--C
Confidence 34566777778999999983 22 24578999999999999999999999999999999999988764 6
Q ss_pred eEEEECCccC---chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcccccc
Q 015591 248 GEIKIGGYPK---VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG 324 (404)
Q Consensus 248 G~I~i~G~~~---~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg 324 (404)
|.|++||-++ +.+.+-+.+||.|| |..++..||.|||.-......++.+-++.+.+.+++++- .+++.+||.+|
T Consensus 391 G~VRLDga~l~qWd~e~lG~hiGYLPQ-dVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG 467 (580)
T COG4618 391 GSVRLDGADLRQWDREQLGRHIGYLPQ-DVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIG 467 (580)
T ss_pred CcEEecchhhhcCCHHHhccccCcCcc-cceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccC
Confidence 9999999874 34678899999999 555667899999964322112222334455667788776 68899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 325 ~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+.|. .||||||||+++||||..+|.+++||||-|+||.+.+..+.+.|.+++++|.|+|+++|+|+ +....|+++++
T Consensus 468 ~~G~-~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl 544 (580)
T COG4618 468 EGGA-TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVL 544 (580)
T ss_pred CCCC-CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeee
Confidence 8765 69999999999999999999999999999999999999999999999989999999999996 68999999863
No 266
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-39 Score=315.34 Aligned_cols=208 Identities=24% Similarity=0.332 Sum_probs=163.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT---GSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~G 254 (404)
.+.++||++.|. ++.+|+++||++++||+++|+|+||||||||+++|+|+.++ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999998763 35699999999999999999999999999999999998652 13579999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc---------cCC-hhhHHHHHHHHHHHcCCCCCc
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP---------EIN-SKTKAEFVNEVLETIELDGIK 319 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~---------~~~-~~~~~~~~~~~l~~l~l~~~~ 319 (404)
.++.. ...++.++|++|+..+++ .||+||+.+....+... ... .....+.+.++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87531 234567999999877666 59999999865322100 011 122345678888888875322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcc
Q 015591 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFD 399 (404)
Q Consensus 320 ~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd 399 (404)
+.....+ +..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|
T Consensus 191 ~~~~~~~-~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLDDN-ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhcCc-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 2222221 357999999999999999999999999999999999999999999999975 589999999997 5788899
Q ss_pred ccc
Q 015591 400 EVK 402 (404)
Q Consensus 400 ~~l 402 (404)
+++
T Consensus 268 ~i~ 270 (305)
T PRK14264 268 QTA 270 (305)
T ss_pred EEE
Confidence 853
No 267
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=7.2e-40 Score=295.02 Aligned_cols=163 Identities=26% Similarity=0.439 Sum_probs=141.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc-
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV- 258 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~- 258 (404)
+++|+++.|+. .++.+++++|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~~ 68 (173)
T cd03246 2 EVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT--SGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCeEEECCEEccc
Confidence 56788876631 1245999999999999999999999999999999999998764 599999998753
Q ss_pred --hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 --QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 --~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
...+++.++|++|++.+++ .|++||+ ||+|||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHH
Confidence 2345677999999876665 5998886 899999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+ +.+|++++
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~ 167 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILV 167 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEE
Confidence 9999999999999999999999999999999999999999777999999999986 44 67999875
No 268
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.4e-39 Score=340.47 Aligned_cols=201 Identities=22% Similarity=0.273 Sum_probs=164.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECC---
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK--TTGSMEGEIKIGG--- 254 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~--~~~~~~G~I~i~G--- 254 (404)
+++|+++.| +++.+|+|+||++.+||+++|+||||||||||+++|+|+. +| .+|+|.++|
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p--~~G~i~~~~~~~ 66 (520)
T TIGR03269 2 EVKNLTKKF-------------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRIIYHVALC 66 (520)
T ss_pred EEEEEEEEE-------------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC--CceEEEEecccc
Confidence 567788765 3457999999999999999999999999999999999985 34 469999972
Q ss_pred --------------------ccC----------ch---hhhcceeEEeecC-CCCCCCCCHHHHHHHHhhhhcCccCChh
Q 015591 255 --------------------YPK----------VQ---ETFARVSGYCEQT-DIHSPQITVEESVIFSAWLRLAPEINSK 300 (404)
Q Consensus 255 --------------------~~~----------~~---~~~~~~~g~v~Q~-~~~~~~~Tv~e~l~~~~~~~~~~~~~~~ 300 (404)
.++ .. ...++.++|++|+ +.+++.+|++||+.++..... ....
T Consensus 67 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~ 143 (520)
T TIGR03269 67 EKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEGK 143 (520)
T ss_pred ccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCHH
Confidence 211 00 1235678999997 567788999999998654321 2233
Q ss_pred hHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 015591 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-T 379 (404)
Q Consensus 301 ~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~ 379 (404)
+..+++.++++.+++.+..++.+ .+||||||||++|||||+.+|++|||||||++||+.++..+++.|+++++ .
T Consensus 144 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 218 (520)
T TIGR03269 144 EAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKAS 218 (520)
T ss_pred HHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 34567889999999987776654 47999999999999999999999999999999999999999999999965 4
Q ss_pred CCeEEEEecCCCHHHHHhccccccC
Q 015591 380 GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 380 g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|+|||++||+++ .+.+.||+++.+
T Consensus 219 g~tviivtHd~~-~~~~~~d~i~~l 242 (520)
T TIGR03269 219 GISMVLTSHWPE-VIEDLSDKAIWL 242 (520)
T ss_pred CcEEEEEeCCHH-HHHHhcCEEEEE
Confidence 999999999997 577889998753
No 269
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.2e-39 Score=310.10 Aligned_cols=185 Identities=26% Similarity=0.362 Sum_probs=157.0
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCCHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
+|+|+||++++||+++|+||||||||||+++|+|+.++ +|+|.++|.++.. ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 79999999999999999999999999999999998742 6999999987532 23455689999988778889999
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEe
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 355 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~-------~p~iLlLD 355 (404)
||+.+..... .......+.++++++.+++.+..++.+ ..||+|||||++|||||+. +|++||||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9998863211 122233456789999999987666654 4799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|+++.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~ 205 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWL 205 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 999999999999999999999777999999999987 68889999875
No 270
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-40 Score=309.80 Aligned_cols=198 Identities=25% Similarity=0.349 Sum_probs=150.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc-
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV- 258 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~- 258 (404)
+++|+++.|+ +++.+|+|+||++++|++++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~v~~~g~~~~~ 67 (236)
T cd03253 2 EFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS--SGSILIDGQDIRE 67 (236)
T ss_pred EEEEEEEEeC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCEEEECCEEhhh
Confidence 5677777652 1245999999999999999999999999999999999988764 699999998643
Q ss_pred --hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHH-----HHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 259 --QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKA-----EFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 259 --~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
...+++.++|++|+..++ ..|++||+.+.... ....... ..+.+.++.+ ....++....+ ...|
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~-~~~L 138 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLF-NDTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRF--PDGYDTIVGER-GLKL 138 (236)
T ss_pred CCHHHHHhhEEEECCCChhh-cchHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhc--cccccchhhcC-CCcC
Confidence 234566799999987665 57999999875321 1111100 0122233322 11122222222 3579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||+++ .+ ..+|+++.
T Consensus 139 S~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~ 207 (236)
T cd03253 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIV 207 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEE
Confidence 99999999999999999999999999999999999999999999876 999999999997 45 45999875
No 271
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-40 Score=311.05 Aligned_cols=188 Identities=25% Similarity=0.320 Sum_probs=168.7
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc---h---hh-hcceeEEeecCCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV---Q---ET-FARVSGYCEQTDIHS 276 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~---~~-~~~~~g~v~Q~~~~~ 276 (404)
..-++|+||+++.||+..|||-||||||||+++|.++..|. +|+|+++|.++. . .. .++.+++|||+..++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept--~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT--RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC--CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 44689999999999999999999999999999999998874 599999998742 1 22 346799999999999
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDE 356 (404)
|..||.||..|+..++. ++++++++++.+.++.+||.+..+.. +++|||||||||.|||||+.+|+||++||
T Consensus 119 PhrtVl~Nv~fGLev~G---v~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQG---VPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeecC---CCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecC
Confidence 99999999999987764 56778889999999999999998887 45899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccc
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l 402 (404)
|+|+|||--+.++++.|.+|.++ .+||+++|||++ |.+.+-||+-
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIa 236 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIA 236 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEE
Confidence 99999999999999999999765 899999999998 7888888864
No 272
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-40 Score=340.87 Aligned_cols=204 Identities=20% Similarity=0.358 Sum_probs=166.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.+ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 265 ~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~--~G~I~~~g~~~ 327 (510)
T PRK09700 265 VFEVRNVTSRD---------------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA--GGEIRLNGKDI 327 (510)
T ss_pred EEEEeCccccC---------------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC--CCeEEECCEEC
Confidence 47788877632 13899999999999999999999999999999999988764 59999999765
Q ss_pred ch----hhhcceeEEeecC---CCCCCCCCHHHHHHHHhhhh---cCc--c-CChhhHHHHHHHHHHHcCCC-CCccccc
Q 015591 258 VQ----ETFARVSGYCEQT---DIHSPQITVEESVIFSAWLR---LAP--E-INSKTKAEFVNEVLETIELD-GIKDSLV 323 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~---~~~~~~~Tv~e~l~~~~~~~---~~~--~-~~~~~~~~~~~~~l~~l~l~-~~~~~~v 323 (404)
.. ...++.++|++|+ ..+++.+||+||+.+....+ ... . .......+.++++++.+++. +..++.+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 407 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc
Confidence 32 1235678999997 35678899999998753211 000 0 01222335678899999996 6677765
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 324 g~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ ++.+.||+++.
T Consensus 408 -----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~ 481 (510)
T PRK09700 408 -----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAV 481 (510)
T ss_pred -----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEE
Confidence 379999999999999999999999999999999999999999999999877999999999986 68889999875
Q ss_pred C
Q 015591 404 F 404 (404)
Q Consensus 404 ~ 404 (404)
+
T Consensus 482 l 482 (510)
T PRK09700 482 F 482 (510)
T ss_pred E
Confidence 3
No 273
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.2e-39 Score=373.33 Aligned_cols=207 Identities=20% Similarity=0.250 Sum_probs=167.6
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|+|+. +.+++|+||||+|+|||.+||+|+||||||||+++|.|++++. +|+|.+||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~--~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE--RGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC--CceEEECCEe
Confidence 46999999998842 2246999999999999999999999999999999999998874 5999999998
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+|+.+++|+|++.++ ..|+||||.++.. ..+.++..+.+...+++.++ .+++..|+.+|+.|. +|||
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF-~GTIreNLd~~~~-~tdeei~~Al~~a~l~~~I~--~lp~GLdt~Vge~G~-nLSg 1377 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLF-SGTVRFNLDPFNE-HNDADLWESLERAHLKDVIR--RNSLGLDAEVSEAGE-NFSV 1377 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccc-cccHHHHhCcCCC-CCHHHHHHHHHHcCcHHHHH--hCccccCccccCCCC-CCCH
Confidence 54 357889999999977655 5699999986421 11111111122222334444 345678999998765 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+++|+|||||||||+||+++++.|++.|++.. +++|+|+|+|+++. ...||+++++
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVL 1445 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVL 1445 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEE
Confidence 99999999999999999999999999999999999999999875 58999999999974 4569999863
No 274
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=343.80 Aligned_cols=215 Identities=22% Similarity=0.226 Sum_probs=171.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+..... ..-..+.+.+|+||||+|++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~--~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ--GGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CcEEEECCEEC
Confidence 48999999987421000 000001246999999999999999999999999999999999998764 59999999865
Q ss_pred ch------hhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCC
Q 015591 258 VQ------ETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 258 ~~------~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
.. ..+++.++||+|++ .+++.+||.||+.+....+. .....+..+.+.++++.++|. +..++.+
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----- 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP----- 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----
Confidence 32 12456799999986 47888999999988653321 111233456788999999995 4556653
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
++|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||++ .+...+|+++++
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl 537 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVM 537 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 479999999999999999999999999999999999999999999999765 999999999997 688899998753
No 275
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-39 Score=291.81 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=171.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
|+.+|++|+. .++++|++||++++|||++||+||||||||||||.|+|...|+ +|++.+||.+..
T Consensus 2 i~a~nls~~~-------------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~--~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSL-------------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEe-------------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC--CCeEeeCCcChh
Confidence 5677888865 4578999999999999999999999999999999999988764 599999999754
Q ss_pred ---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 259 ---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 259 ---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.....+..+.++|+..+-+..||+|-+.++..-.... ....+..+.+++.+...++.+++.... ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g-~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSG-REPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccC-CCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 2445667789999988888899999999986433211 112244566889999999998877664 3699999
Q ss_pred HHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 336 RKRLTIAVELVA------NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 336 rqRl~IAraL~~------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||.+||.|+. ++++|+||||||+||...+..++++.++++++|..|++|-||++ -...++|+++++
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLN-LAA~YaDrivll 214 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN-LAAQYADRIVLL 214 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccch-HHHHhhheeeee
Confidence 999999999986 44589999999999999999999999999999999999999998 467789999863
No 276
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-39 Score=342.76 Aligned_cols=208 Identities=22% Similarity=0.255 Sum_probs=169.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|... .+..++|+||||++++||++||+||||||||||+++|+|+.++. +|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~--~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA--GGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CeEEEECCEEe
Confidence 48999999987421 12356999999999999999999999999999999999998764 59999988532
Q ss_pred -------------chh---hhc-ceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-
Q 015591 258 -------------VQE---TFA-RVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG- 317 (404)
Q Consensus 258 -------------~~~---~~~-~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~- 317 (404)
... .++ +.+|||+|++ .+++.+||+||+.++..... .....+..+++.++++.++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 111 122 4689999986 56788999999999764321 1233344567889999999964
Q ss_pred --CccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHH
Q 015591 318 --IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDI 394 (404)
Q Consensus 318 --~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i 394 (404)
..+.. +.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++++++ |+|||++||++. .+
T Consensus 159 ~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 23444 3579999999999999999999999999999999999999999999999765 999999999986 67
Q ss_pred HHhccccccC
Q 015591 395 FEAFDEVKQF 404 (404)
Q Consensus 395 ~~~fd~~l~~ 404 (404)
.+.+|+++++
T Consensus 233 ~~~adri~vl 242 (623)
T PRK10261 233 AEIADRVLVM 242 (623)
T ss_pred HHhCCEEEEe
Confidence 8899999864
No 277
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.2e-39 Score=329.12 Aligned_cols=215 Identities=24% Similarity=0.309 Sum_probs=176.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
-++++||++.|......- ....+...+++||||++++||++||||+||||||||.++|+|+.+|. +|+|.++|.+.
T Consensus 280 ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~--~G~i~~~g~~~ 355 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS--SGSIIFDGQDL 355 (539)
T ss_pred eeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEEeCccc
Confidence 488999999986532111 00123467999999999999999999999999999999999998874 69999999762
Q ss_pred --c---hhhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCC
Q 015591 258 --V---QETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVN 329 (404)
Q Consensus 258 --~---~~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~ 329 (404)
. ....++.+-+|+|++ .+.|.+||++++.......... ..+++++++.++++.++|.. ..++. ++
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~ 428 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDRY-----PH 428 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----ch
Confidence 1 123456777888875 5689999999998876544322 24566678999999999984 34443 46
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+||||||||++|||||+.+|++|++|||||+||+..+.+|+++|+++.++ |.|.|+||||++ -+...||++.++
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm 503 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVM 503 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEE
Confidence 89999999999999999999999999999999999999999999999865 999999999997 588899998763
No 278
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5e-39 Score=336.95 Aligned_cols=210 Identities=20% Similarity=0.266 Sum_probs=168.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++|+++.|+.. .+.+++|+|+||++++||++||+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 38899999987310 01256999999999999999999999999999999999987652 2479999999
Q ss_pred ccCch---h---hhc-ceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC---cccc
Q 015591 255 YPKVQ---E---TFA-RVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI---KDSL 322 (404)
Q Consensus 255 ~~~~~---~---~~~-~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~ 322 (404)
.++.. . ..+ +.+||++|++. +.+.+|++|++.+...... .....+..++++++++.+++.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 87532 1 122 46999999864 5567899999886532211 12233445678899999999753 3554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccc
Q 015591 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 323 vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~ 401 (404)
+ .+||||||||++|||||+.+|++|||||||++||+.++..+++.|++++++ |+|||++||+++ .+...+|++
T Consensus 154 ~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 P-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred C-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 3 479999999999999999999999999999999999999999999999765 899999999997 577889998
Q ss_pred ccC
Q 015591 402 KQF 404 (404)
Q Consensus 402 l~~ 404 (404)
+.+
T Consensus 228 ~~l 230 (529)
T PRK15134 228 AVM 230 (529)
T ss_pred EEE
Confidence 753
No 279
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-39 Score=336.95 Aligned_cols=209 Identities=23% Similarity=0.368 Sum_probs=168.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+. .+++.+|+|+||++++||+++|+||||||||||+|+|+|+.++. .+|+|.++|.++
T Consensus 259 ~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-~~G~i~~~g~~~ 327 (506)
T PRK13549 259 ILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR-WEGEIFIDGKPV 327 (506)
T ss_pred eEEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCC-CCcEEEECCEEC
Confidence 4788888876521 02346999999999999999999999999999999999987631 359999999865
Q ss_pred ch----hhhcceeEEeecCC---CCCCCCCHHHHHHHHhhhhcCc--cCChhhHHHHHHHHHHHcCCC-CCccccccCCC
Q 015591 258 VQ----ETFARVSGYCEQTD---IHSPQITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELD-GIKDSLVGIPG 327 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~---~~~~~~Tv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~ 327 (404)
.. ...++.++|++|+. .+++.+|+.||+.+........ ........+.++++++.+++. +..++.+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 403 (506)
T PRK13549 328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI---- 403 (506)
T ss_pred CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc----
Confidence 31 12345689999974 4677899999998763211100 012223345688999999996 4667664
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ ++.+.||+++.
T Consensus 404 -~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~ 477 (506)
T PRK13549 404 -ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLV 477 (506)
T ss_pred -ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 379999999999999999999999999999999999999999999999878999999999997 68889999875
No 280
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.7e-39 Score=336.79 Aligned_cols=209 Identities=20% Similarity=0.325 Sum_probs=168.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|.. .+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. .+|+|.++|.++
T Consensus 257 ~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~~G~i~~~g~~~ 325 (500)
T TIGR02633 257 ILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK-FEGNVFINGKPV 325 (500)
T ss_pred eEEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC-CCeEEEECCEEC
Confidence 4778888765410 01346999999999999999999999999999999999987641 359999999875
Q ss_pred ch----hhhcceeEEeecCC---CCCCCCCHHHHHHHHhhhhcC--ccCChhhHHHHHHHHHHHcCCCC-CccccccCCC
Q 015591 258 VQ----ETFARVSGYCEQTD---IHSPQITVEESVIFSAWLRLA--PEINSKTKAEFVNEVLETIELDG-IKDSLVGIPG 327 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~---~~~~~~Tv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~ 327 (404)
.. ...++.++|++|+. .+++.+|++||+.++...... .........+.++++++.+++.+ ..++.+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 401 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI---- 401 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc----
Confidence 31 23456799999984 478889999999886421110 01122233456889999999964 456664
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||+++.
T Consensus 402 -~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~ 475 (500)
T TIGR02633 402 -GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLV 475 (500)
T ss_pred -ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 369999999999999999999999999999999999999999999999878999999999997 68889999875
No 281
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=7.1e-39 Score=335.17 Aligned_cols=206 Identities=21% Similarity=0.300 Sum_probs=166.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC-Ccc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIG-GYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~-G~~ 256 (404)
.++++|+++.|+.. ..+++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++ |.+
T Consensus 279 ~l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~--~G~i~~~~g~~ 348 (520)
T TIGR03269 279 IIKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT--SGEVNVRVGDE 348 (520)
T ss_pred eEEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEEecCCc
Confidence 58999999877310 012356999999999999999999999999999999999998764 6999996 532
Q ss_pred ---Cch------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-----Ccccc
Q 015591 257 ---KVQ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-----IKDSL 322 (404)
Q Consensus 257 ---~~~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~ 322 (404)
... ...++.++|++|++.+++.+||+||+.+..... .......+.++++++.+++.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 349 WVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred cccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 111 123456899999888888899999998754221 122223456788999999964 34554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccc
Q 015591 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 323 vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~ 401 (404)
+ .+||||||||++|||||+.+|++|||||||+|||+.+++.+++.|++++++ |.|||++||+++ .+.+.+|++
T Consensus 425 ~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i 498 (520)
T TIGR03269 425 P-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRA 498 (520)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEE
Confidence 3 479999999999999999999999999999999999999999999999764 899999999997 688899998
Q ss_pred cc
Q 015591 402 KQ 403 (404)
Q Consensus 402 l~ 403 (404)
+.
T Consensus 499 ~~ 500 (520)
T TIGR03269 499 AL 500 (520)
T ss_pred EE
Confidence 75
No 282
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.5e-39 Score=302.17 Aligned_cols=198 Identities=21% Similarity=0.295 Sum_probs=154.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+. +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS--SGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CCEEEECCEEh
Confidence 3788999987631 2246999999999999999999999999999999999987764 69999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcc-------ccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD-------SLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~vg~~~ 327 (404)
. ...+++.++|++|++.++ ..|++||+.+... .. .+.+.+.++.+++.+..+ +..+. .
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~-~~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-~ 136 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLF-SGTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLDTVVEE-G 136 (221)
T ss_pred HhCCHHHHhhhEEEECCCCccc-cchHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhccccccccccc-C
Confidence 3 234567899999987755 4699999975321 11 122344455555433221 11122 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
...||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++ ++. .+|+++.
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~i~~ 209 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-KDCTVLTIAHRLD-TII-DSDRILV 209 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEE
Confidence 35799999999999999999999999999999999999999999999986 4789999999986 454 5898875
No 283
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-38 Score=304.46 Aligned_cols=207 Identities=19% Similarity=0.241 Sum_probs=164.7
Q ss_pred CcEEEEeceeEEeeccc----cccc--ccc-ccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee
Q 015591 176 PLTVAFQDLKYYIDTPL----EMRE--RGF-TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG 248 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~----~~~~--~~~-~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G 248 (404)
++.+.++||+..|+..- .++. .++ ....+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~--~G 79 (264)
T PRK13546 2 NVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT--VG 79 (264)
T ss_pred CceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ce
Confidence 34688888888776521 1111 112 124567999999999999999999999999999999999998764 59
Q ss_pred EEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCC
Q 015591 249 EIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328 (404)
Q Consensus 249 ~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~ 328 (404)
+|.++|. ++++.|...+.+.+|++||+.+...... ....+..+.++++++.+++.+..++.+
T Consensus 80 ~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (264)
T PRK13546 80 KVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCMG---FKRKEIKAMTPKIIEFSELGEFIYQPV----- 141 (264)
T ss_pred EEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCc-----
Confidence 9999984 3456676666678899999987643321 222333445677888888877666654
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||+|||||++|||||+.+|++|||||||+|||+.++..+++.|.++++.|+|||++||+++ ++.+.+|+++.
T Consensus 142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~ 215 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAW 215 (264)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEE
Confidence 479999999999999999999999999999999999999999999998777999999999986 67788998864
No 284
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.7e-39 Score=291.65 Aligned_cols=166 Identities=25% Similarity=0.451 Sum_probs=141.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+. .++.+++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 1 i~~~~~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPE-----------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCC-----------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCEEHH
Confidence 357788876631 1135999999999999999999999999999999999998764 599999998653
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ..+++.++|++|++.+++ .|++||+ ...||+|||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~ 104 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGER 104 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHH
Confidence 2 245677999999876654 6998886 136999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++||||++.+|++|||||||+|||+.++..+++.|+++. +++|||++||+++ ++ +.+|+++.
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~ 168 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILF 168 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEE
Confidence 99999999999999999999999999999999999999985 5899999999997 44 46998865
No 285
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.5e-39 Score=336.66 Aligned_cols=215 Identities=22% Similarity=0.273 Sum_probs=169.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+...+. ..-..+++.+|+|+||++++||+++|+||||||||||+++|+|+.+ .+|+|.++|.++
T Consensus 275 ~l~~~~l~~~~~~~~~~--~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i 349 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGI--LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPL 349 (529)
T ss_pred cccccCcEEEeecCccc--cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEc
Confidence 48899999877311000 0000013569999999999999999999999999999999999874 369999999865
Q ss_pred ch---h---hhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCC
Q 015591 258 VQ---E---TFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 258 ~~---~---~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
.. . .+++.++|++|+. .+++.+||+||+.++...+.. .....+..+.++++++.+++. +..++.+
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 423 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP----- 423 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----
Confidence 32 1 1356789999985 367789999999986532211 112233446688999999996 3556553
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|+++++
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l 499 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVL 499 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEE
Confidence 479999999999999999999999999999999999999999999999865 899999999997 678899998753
No 286
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.3e-39 Score=371.18 Aligned_cols=200 Identities=22% Similarity=0.248 Sum_probs=165.9
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|.|+. +.+++|+|+||+|++||.+||+|+||||||||+++|.|+++|. +|+|.+||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~--~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE--KGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CceEEECCEE
Confidence 36999999998842 2356999999999999999999999999999999999998874 5999999998
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~ 326 (404)
+. ...+|+.++||+|++.++ +.|+||||.+.. +.+ ++.+.++++.. .+++..|+.+|+.
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF-~gTIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLF-SGTVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeee-CccHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 54 356889999999977665 569999998642 111 12233334433 3455678999987
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|. +||||||||++|||||+++|+|||||||||+||+++++.|.+.|++.. +++|+|+|+|+++. ...||+++++
T Consensus 1369 G~-~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL 1442 (1495)
T PLN03232 1369 GE-NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVL 1442 (1495)
T ss_pred CC-CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEE
Confidence 65 699999999999999999999999999999999999999999999875 58999999999963 5569999863
No 287
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=4.5e-39 Score=320.44 Aligned_cols=205 Identities=24% Similarity=0.356 Sum_probs=181.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++++++.| +...+++||||++++||+.||+|+||||||||+++|.|.+.|+ +|+|.++|++.
T Consensus 4 ~l~~~~itK~f-------------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~--~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRF-------------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD--SGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEc-------------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC--cceEEECCEEe
Confidence 37778888766 3567999999999999999999999999999999999999885 59999999874
Q ss_pred c----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 V----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
. .+..+..||+|.|+..+.+++||.||+..+.........+.+...+.++++.+.+||+-..|..++ .||.
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCc
Confidence 3 244567899999999999999999999998654322334566677889999999999877788875 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||.|-++|+++|++||||||||-|-|+..+++++.+++++++|+|||+|||.+. |+.+.+|++-+
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTV 212 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTV 212 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEE
Confidence 9999999999999999999999999999999999999999999999999999999997 89999998743
No 288
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-38 Score=325.87 Aligned_cols=179 Identities=20% Similarity=0.291 Sum_probs=149.6
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
+.+|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~--sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN--KGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--ceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 46999999999999999999999999999999999998764 59999999641 1222334566789999
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
|+.+...... ....+..+.+.++++.+++.+..++.+ ..||||||||++|||||+.+|++|||||||+|||+
T Consensus 105 nL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 9988543221 222333456778899999987777664 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 364 RAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 364 ~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.++..+++.|++++++|+|||++||+++ ++.+.||+++.
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIiv 215 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALW 215 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEE
Confidence 9999999999998777999999999987 68888999875
No 289
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.1e-39 Score=292.73 Aligned_cols=155 Identities=31% Similarity=0.473 Sum_probs=131.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~T 280 (404)
+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.. ..+++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~--~G~v~~~g~~~~~~~~~~~~~~i~~~~q--------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS--SGEILLDGKDLASLSPKELARKIAYVPQ--------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECCcCCHHHHHHHHhHHHH---------
Confidence 56999999999999999999999999999999999998764 6999999987532 233445677776
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsg 360 (404)
+++.+++.+..++.. ..||+|||||++|||||+.+|+++||||||+|
T Consensus 81 ----------------------------~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 81 ----------------------------ALELLGLAHLADRPF-----NELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred ----------------------------HHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 445556654444432 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 361 LDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+.++..+.+.|++++++ |.|+|++||+++ ++.+.+|+++.
T Consensus 128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~ 170 (180)
T cd03214 128 LDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVIL 170 (180)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999766 899999999997 67789999875
No 290
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=8.5e-39 Score=294.65 Aligned_cols=171 Identities=24% Similarity=0.335 Sum_probs=142.0
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|..+..+.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 2 EIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred eEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 5677877652 356999999999999999999999999999999999984212346999999987542
Q ss_pred ---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 260 ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 260 ---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. .++.++|++|+..+++..++++++ +.. ...||+||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~-----~~~LS~G~ 109 (200)
T cd03217 69 LPPEERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYV-----NEGFSGGE 109 (200)
T ss_pred CCHHHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhc-----cccCCHHH
Confidence 12 234599999988777778877765 000 12599999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHH-hcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFE-AFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~-~fd~~l~ 403 (404)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+ .+|+++.
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~ 177 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHV 177 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEE
Confidence 99999999999999999999999999999999999999999777899999999997 5555 6999865
No 291
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=283.59 Aligned_cols=196 Identities=24% Similarity=0.374 Sum_probs=165.6
Q ss_pred cccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc---hhhhcceeEEe
Q 015591 193 EMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV---QETFARVSGYC 269 (404)
Q Consensus 193 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~~~~~~~~g~v 269 (404)
+.+++.|..++.++|+|+||.+.+||..+|.||||||||||+|+++-+.+|+ +|++++.|++++ .+.+|..++||
T Consensus 5 e~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~--~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT--SGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred HHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC--CceEEEcCccccccChHHHHHHHHHH
Confidence 3445566667788999999999999999999999999999999999998875 599999999854 46789999999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcC
Q 015591 270 EQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVAN 348 (404)
Q Consensus 270 ~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~ 348 (404)
.|.+.+|+ .||++|+.|+-..|... ...+.+.++++.+++.+. .++.+ .+||||||||++|+|.|..-
T Consensus 83 ~Q~paLfg-~tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~i-----t~lSGGE~QriAliR~Lq~~ 151 (223)
T COG4619 83 AQTPALFG-DTVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKNI-----TELSGGEKQRIALIRNLQFM 151 (223)
T ss_pred HcCccccc-cchhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcchh-----hhccchHHHHHHHHHHhhcC
Confidence 99988776 49999999998776432 123456788888898753 44443 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHhccccc
Q 015591 349 PSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 349 p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
|+||+||||||+||+.++++|-++|.++. ++..+++-+||++. +-...+|+++
T Consensus 152 P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~i 205 (223)
T COG4619 152 PKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVI 205 (223)
T ss_pred CceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEE
Confidence 99999999999999999999999999986 56899999999997 4455677654
No 292
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.9e-39 Score=309.34 Aligned_cols=198 Identities=20% Similarity=0.266 Sum_probs=159.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+. +...+|+|+||+|++||+++|+|+||||||||+++|+|+.+ . +|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~--~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T--EGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C--CcEEEECCEEh
Confidence 3789999998742 23469999999999999999999999999999999999875 2 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCc-------cccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK-------DSLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~vg~~~ 327 (404)
. ...+++.++|++|++.+++ .|++||+..... .. .+.+.+.++.++|.+.. ++.+++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~~------~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~- 135 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYGK------WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG- 135 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhccC------CC----HHHHHHHHHHcCCHHHHHhCcccccceecCC-
Confidence 3 2356778999999888765 599999964210 11 13355667777775433 3344443
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
...||+|||||++|||||+.+|+||+|||||++||+.++..+.+.|+++. .++|||++||+++ .+. .+|+++++
T Consensus 136 g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl 209 (275)
T cd03289 136 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVI 209 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEe
Confidence 34699999999999999999999999999999999999999999999875 5899999999995 454 59998763
No 293
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.5e-39 Score=333.70 Aligned_cols=194 Identities=18% Similarity=0.218 Sum_probs=161.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~--~G~i~~~~~~~~ 68 (490)
T PRK10938 4 LQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL--SGERQSQFSHIT 68 (490)
T ss_pred EEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CceEEECCcccc
Confidence 78899998763 346999999999999999999999999999999999988764 599999987542
Q ss_pred ---hhhhcceeEEeecCCCC--C------CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 259 ---QETFARVSGYCEQTDIH--S------PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 259 ---~~~~~~~~g~v~Q~~~~--~------~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
....++.++|++|++.. + ..+|++|++.+. ....++++++++.+++.+..++.+
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~---- 133 (490)
T PRK10938 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF---- 133 (490)
T ss_pred cCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc----
Confidence 12334568999997532 1 146888877542 112356788999999987777764
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||+++.+
T Consensus 134 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l 208 (490)
T PRK10938 134 -KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVL 208 (490)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEE
Confidence 479999999999999999999999999999999999999999999999877999999999997 688899998753
No 294
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.1e-38 Score=297.54 Aligned_cols=185 Identities=26% Similarity=0.350 Sum_probs=144.0
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhhcceeEEeecCCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETFARVSGYCEQTDIHS 276 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~g~v~Q~~~~~ 276 (404)
+++++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL--EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 56999999999999999999999999999999999998764 5999999986432 12346799999987665
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-------ccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-------KDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
..|++||+.+.... .. +...++++.+++.+. .++..+.+ +..||+|||||++|||||+.+|
T Consensus 92 -~~t~~~nl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSPF------NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGER-GINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCcC------CH----HHHHHHHHHhCcHHHHHhCcCccccCcccC-CCcCCHHHHHHHHHHHHHhhCC
Confidence 67999999875311 11 112334444444321 11222222 3579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 350 SIIFMDEPTTGLDARAAAIIMR--AVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 350 ~iLlLDEPtsgLD~~~~~~i~~--~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
++|||||||+|||+.++..+++ +++.+.+.|.|+|++||+++ .+ ..+|+++.+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l 214 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAM 214 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEe
Confidence 9999999999999999999998 66666666899999999997 34 569998753
No 295
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.8e-39 Score=295.86 Aligned_cols=188 Identities=21% Similarity=0.335 Sum_probs=143.9
Q ss_pred EEEeceeEEeeccccccccccccCc---eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKK---LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
++++||++.|.. .+ +.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|
T Consensus 1 l~~~~l~~~~~~-----------~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~--~G~i~~~g- 66 (204)
T cd03250 1 ISVEDASFTWDS-----------GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL--SGSVSVPG- 66 (204)
T ss_pred CEEeEEEEecCC-----------CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC--CCeEEEcC-
Confidence 357788876631 11 36999999999999999999999999999999999988764 69999998
Q ss_pred cCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-------CccccccCCCC
Q 015591 256 PKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-------IKDSLVGIPGV 328 (404)
Q Consensus 256 ~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~vg~~~~ 328 (404)
.++|++|++.++ ..|++||+.+.... .. + ...+..+.+++.+ ..++....+ .
T Consensus 67 ---------~i~~~~q~~~l~-~~t~~enl~~~~~~------~~-~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~ 125 (204)
T cd03250 67 ---------SIAYVSQEPWIQ-NGTIRENILFGKPF------DE-E---RYEKVIKACALEPDLEILPDGDLTEIGEK-G 125 (204)
T ss_pred ---------EEEEEecCchhc-cCcHHHHhccCCCc------CH-H---HHHHHHHHcCcHHHHHhccCcccceecCC-C
Confidence 589999987765 67999999885321 11 1 1122222222211 122222222 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR-AVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||+|||||++|||||+.+|++++|||||+|||+.+++.+.+ +++++.++|+|||++||+++ .+.. +|+++.
T Consensus 126 ~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~ 199 (204)
T cd03250 126 INLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVV 199 (204)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEE
Confidence 5799999999999999999999999999999999999999988 46666556899999999986 4444 998875
No 296
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-39 Score=333.15 Aligned_cols=192 Identities=20% Similarity=0.343 Sum_probs=159.2
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch----hhhcceeEEeecCC---CCCC
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----ETFARVSGYCEQTD---IHSP 277 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~g~v~Q~~---~~~~ 277 (404)
.+++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT--AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC--CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 4899999999999999999999999999999999988764 6999999986531 22346789999975 3788
Q ss_pred CCCHHHHHHHHhhhhcCc-c--CChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 015591 278 QITVEESVIFSAWLRLAP-E--INSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 353 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~-~--~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLl 353 (404)
.+|+.||+.++....... . .......+.++++++.+++. +..++.++ .|||||||||+|||||+.+|++||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEE
Confidence 899999998754221100 0 11222345678899999994 56677654 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 354 MDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 354 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.+|+++.+
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l 469 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVM 469 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEE
Confidence 99999999999999999999999888999999999997 688999998753
No 297
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2e-38 Score=283.93 Aligned_cols=159 Identities=28% Similarity=0.421 Sum_probs=136.7
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ +++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.
T Consensus 2 ~~~~~~~~~~------------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~~~---- 63 (166)
T cd03223 2 ELENLSLATP------------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG--SGRIGMPEG---- 63 (166)
T ss_pred EEEEEEEEcC------------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCC----
Confidence 5677887652 1246999999999999999999999999999999999988764 699999873
Q ss_pred hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHH
Q 015591 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL 339 (404)
Q Consensus 260 ~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl 339 (404)
+.++|++|++.+ +..|++||+.+. . ...||+|||||+
T Consensus 64 ----~~i~~~~q~~~~-~~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~rv 100 (166)
T cd03223 64 ----EDLLFLPQRPYL-PLGTLREQLIYP---------------------------------W-----DDVLSGGEQQRL 100 (166)
T ss_pred ----ceEEEECCCCcc-ccccHHHHhhcc---------------------------------C-----CCCCCHHHHHHH
Confidence 568999997654 567999998752 0 136999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||+.+|++|+|||||+|||+.++..+.+.|+++ ++|+|++||+++ ....+|+++.+
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l 160 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDL 160 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEE
Confidence 9999999999999999999999999999999999875 689999999985 35789998753
No 298
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-39 Score=287.11 Aligned_cols=163 Identities=31% Similarity=0.506 Sum_probs=138.9
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|.. .+..+++|+||++++|++++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~--~G~i~~~g~~~~~ 68 (171)
T cd03228 2 EFKNVSFSYPG-----------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT--SGEILIDGVDLRD 68 (171)
T ss_pred EEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CCEEEECCEEhhh
Confidence 56777776531 1136999999999999999999999999999999999998764 6999999986532
Q ss_pred ---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 260 ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 260 ---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
...++.++|++|++.+++ .|++||+ ||+|||
T Consensus 69 ~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~ 102 (171)
T cd03228 69 LDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQR 102 (171)
T ss_pred cCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHH
Confidence 234667999999876554 6888876 899999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|+|++||+++ ++.. +|+++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~~-~d~~~~l 167 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLS-TIRD-ADRIIVL 167 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHHh-CCEEEEE
Confidence 99999999999999999999999999999999999999986 4799999999997 4555 9998753
No 299
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-39 Score=283.97 Aligned_cols=183 Identities=23% Similarity=0.360 Sum_probs=156.6
Q ss_pred ccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc-------------h---hhhc
Q 015591 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV-------------Q---ETFA 263 (404)
Q Consensus 200 ~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~-------------~---~~~~ 263 (404)
+++...+|++||+..++|+++.|+|.|||||||+|+||.=+.+|. .|.|.+||..+. . +.+|
T Consensus 15 ~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~--~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~R 92 (256)
T COG4598 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLR 92 (256)
T ss_pred hcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC--CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHH
Confidence 346678999999999999999999999999999999999887774 599999997421 1 2345
Q ss_pred ceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHH
Q 015591 264 RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAV 343 (404)
Q Consensus 264 ~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAr 343 (404)
...|+|+|..+++..+||.||+.-+-. + -...++.+..++++..+..+|+.+..|.. | ..|||||+||++|||
T Consensus 93 s~L~mVFQ~FNLWsHmtvLeNViEaPv-h-VLg~~k~ea~e~Ae~~L~kVGi~ek~~~Y---P--~~LSGGQQQR~aIAR 165 (256)
T COG4598 93 TRLGMVFQHFNLWSHMTVLENVIEAPV-H-VLGVSKAEAIERAEKYLAKVGIAEKADAY---P--AHLSGGQQQRVAIAR 165 (256)
T ss_pred HHhhHhhhhcchhHHHHHHHHHHhcch-H-hhcCCHHHHHHHHHHHHHHhCchhhhhcC---c--cccCchHHHHHHHHH
Confidence 567999999999999999999975421 1 11345666778889999999998877754 3 469999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 344 ELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 344 aL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||...
T Consensus 166 aLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred HHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 999999999999999999999999999999999999999999999875
No 300
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.4e-38 Score=332.36 Aligned_cols=203 Identities=18% Similarity=0.244 Sum_probs=159.7
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+.. ...++++|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~--------~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~--~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAP--------EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ--EGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCC--------CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEE
Confidence 469999999988521 001235999999999999999999999999999999999998874 5999999987
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcccc-ccCCCCCCCC
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL-VGIPGVNGLS 332 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-vg~~~~~~LS 332 (404)
+.. ..+++.++||+|++. +++.|+++|.. + ....+.++++++.+++.+..+.. -|..-...||
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~-lf~~ti~~n~~--------~----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFH-LFDDLIGPDEG--------E----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred CCCCCHHHHHhhCcEEccChh-hhhhhhhcccc--------c----chhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 643 456788999999655 45668888841 1 11234567788888876543221 1211124699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK-NVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~-~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||++||||++++|++||||||||+||+++++.+.+.+. .+...|+|+|++||+++ ..+.+|+++++
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l 543 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKL 543 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEE
Confidence 999999999999999999999999999999999999998664 45556999999999985 56889998753
No 301
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.6e-38 Score=292.58 Aligned_cols=187 Identities=23% Similarity=0.289 Sum_probs=150.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+. ..+.+++|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE--EGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCeEEECCEEh
Confidence 4889999997731 1236999999999999999999999999999999999998764 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ....++.++|++|++.+++ .|++||+.+.. ... .+.+.+.++ + +.. ...||+|
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~----~~~~~~~l~---~----~~~-----~~~LS~G 129 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYS----DEEIYGALR---V----SEG-----GLNLSQG 129 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCC----HHHHHHHhh---c----cCC-----CCcCCHH
Confidence 3 2234677999999876655 69999997531 111 112233332 2 222 3479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +|+|+|++||+++ ++. .+|+++.
T Consensus 130 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~-~~d~v~~ 195 (207)
T cd03369 130 QRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TII-DYDKILV 195 (207)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEE
Confidence 9999999999999999999999999999999999999999985 5899999999997 344 4899875
No 302
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.1e-38 Score=296.83 Aligned_cols=182 Identities=28% Similarity=0.380 Sum_probs=149.8
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCC--CCCCHHHHHHHHh
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS--PQITVEESVIFSA 289 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~--~~~Tv~e~l~~~~ 289 (404)
|++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.+.. ..++.++|++|++.+. +.+|+.||+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA--KGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 568999999999999999999999999988764 599999998753 2456799999987653 3579999998753
Q ss_pred hhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 015591 290 WLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 368 (404)
Q Consensus 290 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~ 368 (404)
..... .........+.+.++++.+++.+..++.+ .+||+|||||++|||||+.+|++|||||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 00111223456788999999987776654 3699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 369 IMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 369 i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+.+.|++++++|+|+|++||+++ ++.+.+|++++
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~ 185 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVL 185 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999877999999999987 68889999875
No 303
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.3e-38 Score=366.71 Aligned_cols=200 Identities=20% Similarity=0.205 Sum_probs=165.3
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|+|+. +..++|+||||+|+|||.+||+|+||||||||+++|.|++++. +|+|.+||.+
T Consensus 1283 g~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~--~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA--EGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC--CCeEEECCEE
Confidence 46999999999853 2246999999999999999999999999999999999998874 5999999998
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-------CCCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~ 326 (404)
+. ...+|+.+++|+|++.++ ..|+||||.... +.+ ++.+.++++..+ +++..|+.+|+.
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF-~gTIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLF-SGSLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCccc-CccHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 54 357889999999977765 469999997321 111 122334444433 446689999987
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|. +||||||||++|||||+++|+||+||||||+||++++..|++.|++.. +++|||+|+|+++ ....+|+++++
T Consensus 1419 G~-~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVl 1492 (1522)
T TIGR00957 1419 GE-NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVL 1492 (1522)
T ss_pred CC-cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEE
Confidence 64 699999999999999999999999999999999999999999999865 5899999999996 36679999864
No 304
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.4e-38 Score=321.66 Aligned_cols=212 Identities=24% Similarity=0.310 Sum_probs=175.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECCc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG--SMEGEIKIGGY 255 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G~ 255 (404)
.++++||+..|... .+...+++||||++.+||++||+|+|||||||+.+.|.|+.+++ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 48899998877532 12347999999999999999999999999999999999987654 24799999998
Q ss_pred cCc---hh----hhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 256 PKV---QE----TFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 256 ~~~---~~----~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
++. .. ...+.++|++|++ .+.|-+||.+-+.-....+... ..++..+++.++++.+++++-... -.+
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~--~~~ea~~~a~elL~~Vgl~~~~~~-~~y- 151 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG--SRAEARKRAVELLEQVGLPDPERR-DRY- 151 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHcCCCChhhh-ccC-
Confidence 642 11 1236799999985 3567789999888766655432 256677888999999999876554 123
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+++||||||||+.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|+||||+. -+.+++|+++++
T Consensus 152 -PheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm 228 (539)
T COG1123 152 -PHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVM 228 (539)
T ss_pred -CcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEE
Confidence 478999999999999999999999999999999999999999999999985 5999999999997 588999999863
No 305
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=330.24 Aligned_cols=190 Identities=21% Similarity=0.344 Sum_probs=158.3
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch----hhhcceeEEeecCC---CCCCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----ETFARVSGYCEQTD---IHSPQ 278 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~g~v~Q~~---~~~~~ 278 (404)
+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.. ...++.++|++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~--~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT--SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 799999999999999999999999999999999998764 5999999976532 12356799999985 46788
Q ss_pred CCHHHHHHHHhhhhcCc---cCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 015591 279 ITVEESVIFSAWLRLAP---EINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 354 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~---~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlL 354 (404)
+|++||+.+........ .....+..+.++++++.+++. +..++.+ ..||||||||++|||||+.+|++|||
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999998753211100 012223345688999999995 5667664 37999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+++.
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~ 467 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILV 467 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEE
Confidence 9999999999999999999999877999999999997 68889999875
No 306
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.6e-38 Score=282.38 Aligned_cols=150 Identities=26% Similarity=0.423 Sum_probs=131.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD--SGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEECC
Confidence 35778888663 356999999999999999999999999999999999998764 599999998753
Q ss_pred h----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 259 Q----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 ~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...++.++|++| ||+|
T Consensus 66 ~~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G 86 (163)
T cd03216 66 FASPRDARRAGIAMVYQ-----------------------------------------------------------LSVG 86 (163)
T ss_pred cCCHHHHHhcCeEEEEe-----------------------------------------------------------cCHH
Confidence 2 123456788877 9999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|.|+|++||+++ ++.+.+|+++.
T Consensus 87 ~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~ 154 (163)
T cd03216 87 ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTV 154 (163)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999777999999999986 57788998865
No 307
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.6e-38 Score=363.25 Aligned_cols=211 Identities=23% Similarity=0.357 Sum_probs=167.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEE-CCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI-GGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i-~G~~ 256 (404)
.++++||+|.|+.. .+.++|+|+||++++||++||+||||||||||+++|+|+++|. +|+|++ +|.+
T Consensus 382 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT--EGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCC----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC--CCeEEEeCCcc
Confidence 59999999988521 1246999999999999999999999999999999999998874 599999 4666
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhh-c---------C-----cc----------------------
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLR-L---------A-----PE---------------------- 296 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~-~---------~-----~~---------------------- 296 (404)
+. ...+|+.+|||+|++.+++ .|++||+.++.... . . .+
T Consensus 450 i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 450 LKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred hhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 43 3456788999999877665 69999999974210 0 0 00
Q ss_pred --C---------ChhhHHHHHHHHHHHcC-------CCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 015591 297 --I---------NSKTKAEFVNEVLETIE-------LDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358 (404)
Q Consensus 297 --~---------~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPt 358 (404)
. ......+.+.++++.++ +++..|+.+|..+ ..||||||||++|||||+++|+||||||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g-~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNA-SKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 0 00011234555555554 4556788888875 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 359 TGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 359 sgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|+||+.++..|.+.|+++++ +|+|+|+++|+++. ...+|+++++
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl 652 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST--IRYANTIFVL 652 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEE
Confidence 99999999999999999875 58999999999973 4789998763
No 308
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.3e-38 Score=302.78 Aligned_cols=204 Identities=21% Similarity=0.263 Sum_probs=153.7
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|+++.|+. .++.+|+|+||++++||+++|+|+||||||||+++|+|+.++ .+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~ 84 (257)
T cd03288 18 GEIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI--FDGKIVIDGID 84 (257)
T ss_pred ceEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC--CCCeEEECCEE
Confidence 45999999998742 124699999999999999999999999999999999998876 46999999987
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc--CCCCCccccccCCCCCCC
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI--ELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~vg~~~~~~L 331 (404)
+.. ..+++.++|++|++.+++ .|++||+....... ............+++.++.+ +++ +..+.+ ...|
T Consensus 85 i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~----~~~~~~-~~~L 157 (257)
T cd03288 85 ISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPECKCT-DDRLWEALEIAQLKNMVKSLPGGLD----AVVTEG-GENF 157 (257)
T ss_pred hhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCCCCC-HHHHHHHHHHhCcHHHHhhcccccC----cEeccC-CCcC
Confidence 532 345678999999876655 69999986421100 00000000011123333333 232 223322 3579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+|||||++|||||+.+|++|||||||+|||+.++..+.+.++++. ++.|||++||+++ ++.. +|+++.
T Consensus 158 S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~ 226 (257)
T cd03288 158 SVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLV 226 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEE
Confidence 9999999999999999999999999999999999999999999875 5899999999997 4554 999875
No 309
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.9e-38 Score=332.40 Aligned_cols=196 Identities=20% Similarity=0.258 Sum_probs=158.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|++|.|+. ++++|+|+|+++++||.+||+||||||||||+++|+|+++|. +|+|.+||.++
T Consensus 322 ~i~~~~v~f~y~~------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~~ 387 (547)
T PRK10522 322 TLELRNVTFAYQD------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKPV 387 (547)
T ss_pred eEEEEEEEEEeCC------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEEC
Confidence 6999999998841 245999999999999999999999999999999999998874 59999999985
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...+++.++||+|++. +++.|++|| . . ...++.++++++.+++.+..+..-+..+..+||||
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~-lf~~ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgG 453 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFH-LFDQLLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKG 453 (547)
T ss_pred CCCCHHHHhhheEEEecChh-HHHHhhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHH
Confidence 4 3457788999999665 455688887 1 0 12234567888888876543321111012469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++||||++++|++||||||||+||+++++.+.+.+.+..+ .|+|+|++||+++ ....+|+++.
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~ 521 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLE 521 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEE
Confidence 99999999999999999999999999999999999999987643 5899999999984 5778999875
No 310
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.8e-38 Score=362.54 Aligned_cols=200 Identities=23% Similarity=0.241 Sum_probs=166.5
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|+|+. +...+|+||||+|++||.+||+|+||||||||+++|.|++++. +|+|++||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~--~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC--GGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEE
Confidence 46999999998853 2345999999999999999999999999999999999998874 5999999998
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC-------CCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-------DGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~vg~~ 326 (404)
+. ...+|+.++||+|++.+| ..||||||.... +.+ ++.+.++++..++ ++..|+.+|+.
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF-~gTIreNIdp~~------~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLF-DGTVRQNVDPFL------EAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccc-cccHHHHhCccc------CCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 54 457889999999977655 569999996421 111 2334455555444 45678999987
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVAN-PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~-p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|. +||||||||++|||||+++ |+|||||||||+||+++++.|.+.|++.. +++|||+|+|+++ ....||+|+++
T Consensus 1443 G~-nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL 1517 (1560)
T PTZ00243 1443 GS-NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVM 1517 (1560)
T ss_pred cC-cCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEE
Confidence 64 6999999999999999996 89999999999999999999999999864 5899999999995 56789999863
No 311
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.3e-38 Score=297.03 Aligned_cols=175 Identities=24% Similarity=0.275 Sum_probs=146.1
Q ss_pred eeeeeeeeee-----CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCC
Q 015591 206 LLYDVTGSLR-----PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 206 iL~~vs~~i~-----~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~T 280 (404)
.+++++++++ +||+++|+||||||||||+++|+|+.+|. +|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~--~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD--EGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CCeEEECCc---------eEEEecccccCCCCCC
Confidence 5666666665 79999999999999999999999988764 599999884 5799999877677899
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsg 360 (404)
|+|++.+...... ......+++++.+++.+..++.+ ..||||||||++|||||+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~-------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY-------THPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc-------ccHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432111 01223567888899987766654 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 361 LDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+.++..+.+.|+++++ .|+|||++||+++ .+...+|+++++
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l 189 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVF 189 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999875 4899999999986 677789998753
No 312
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-39 Score=312.09 Aligned_cols=209 Identities=27% Similarity=0.378 Sum_probs=180.6
Q ss_pred CCCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC
Q 015591 174 FEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIG 253 (404)
Q Consensus 174 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~ 253 (404)
.....+.|.+++|.|++ .+++|+++||.+++|+.+|++||||+||||++++|-+++++. +|.|.+|
T Consensus 258 ~~~g~v~F~~V~F~y~~------------~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~--sG~I~id 323 (497)
T COG5265 258 VRLGAVAFINVSFAYDP------------RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITID 323 (497)
T ss_pred cccceEEEEEEEeeccc------------cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc--CceEEEc
Confidence 44557999999998853 578999999999999999999999999999999999998874 5999999
Q ss_pred CccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 254 GYPKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 254 G~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
|+++. ..++|+.+|.||| |..+++.|+..|+.|+.......++..+.+.+.+..+++ .+++..|+.||+.|.+
T Consensus 324 ~qdir~vtq~slR~aIg~VPQ-DtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgerglk- 399 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQ-DTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGLK- 399 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcc-cceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchheee-
Confidence 99853 4678899999999 555677899999999865554445555556667777887 5788999999999885
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||||+|||+++++|+||+|||+||+||..++++|+..|++.. .|+|.+++.|++|. .--.|++++
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst--i~~adeiiv 469 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST--IIDADEIIV 469 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh--ccCCceEEE
Confidence 99999999999999999999999999999999999999999999986 79999999999985 334677765
No 313
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-38 Score=270.26 Aligned_cols=192 Identities=27% Similarity=0.394 Sum_probs=164.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc-
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP- 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~- 256 (404)
.|++++++++| +..++|-||+++.+.||.+.|+||||||||||+++|.=+..|. +|+..|-|..
T Consensus 2 sirv~~in~~y-------------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~--sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFY-------------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHF 66 (242)
T ss_pred ceEEccccccc-------------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC--CCeEEeccccc
Confidence 46778888776 4578999999999999999999999999999999998766664 5999887753
Q ss_pred -Cc-------hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCC
Q 015591 257 -KV-------QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328 (404)
Q Consensus 257 -~~-------~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~ 328 (404)
.+ ...+|+.+|+|+|+..++|.+||.||+.-+- .+. ...++.+.+.++.++++++.|.+.+|+. +
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~-----p 139 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRY-----P 139 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccC-----c
Confidence 11 1357888999999999999999999997542 221 2345566778889999999999999876 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
-.|||||+||++|||||+.+|++|++||||++|||+-..++.++|++|+..|.|-+++||..+
T Consensus 140 lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~ 202 (242)
T COG4161 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE 202 (242)
T ss_pred eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh
Confidence 369999999999999999999999999999999999999999999999988999999999865
No 314
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.3e-37 Score=324.90 Aligned_cols=191 Identities=20% Similarity=0.267 Sum_probs=156.5
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---h-hhcceeEEeecCC---CCCCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---E-TFARVSGYCEQTD---IHSPQ 278 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~-~~~~~~g~v~Q~~---~~~~~ 278 (404)
+|+||||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.++.. . ..++.++|++|+. .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR--GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 699999999999999999999999999999999988764 5999999986532 1 2345789999973 46788
Q ss_pred CCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 015591 279 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 357 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEP 357 (404)
+|+.||+......+..........++.++++++.+++. +..++.+ ..||||||||++|||||+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 89999996431111010011122345678999999996 6667764 37999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 358 TTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 358 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|+|||+.+++.+.+.|++++++|.|||++|||++ ++.+.||+++.+
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l 476 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVM 476 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999878999999999997 688899998753
No 315
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-38 Score=287.71 Aligned_cols=209 Identities=22% Similarity=0.344 Sum_probs=172.9
Q ss_pred CCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 175 EPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
...-|.++|++..+ +++++|+|+|++|+|||.++|+|||||||||||++++|..+|. +|.+.+.|
T Consensus 28 ~~~li~l~~v~v~r-------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G 92 (257)
T COG1119 28 NEPLIELKNVSVRR-------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLG 92 (257)
T ss_pred CcceEEecceEEEE-------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeee
Confidence 33459999999876 4688999999999999999999999999999999999988775 69999999
Q ss_pred ccCc---h-hhhcceeEEeecC--CCCCCCCCHHHHHHHHhhhh--cCccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 255 YPKV---Q-ETFARVSGYCEQT--DIHSPQITVEESVIFSAWLR--LAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 255 ~~~~---~-~~~~~~~g~v~Q~--~~~~~~~Tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
+... . .++|+.||+|.-. ..+.++.+|+|-+.-+..-. .......++..+.+..+++.+++.+.+|+..+
T Consensus 93 ~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-- 170 (257)
T COG1119 93 RRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-- 170 (257)
T ss_pred eeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh--
Confidence 7632 1 5678999999743 33456678888775433211 11112345566788999999999999998865
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT--GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~--g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||-|||||+.|||||+++|++|||||||+|||...++.+.+.|.+++.. +.++|+|||+.+ |+-.-|++++++
T Consensus 171 ---~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll 246 (257)
T COG1119 171 ---SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLL 246 (257)
T ss_pred ---hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEe
Confidence 69999999999999999999999999999999999999999999999854 789999999997 888888888764
No 316
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=321.85 Aligned_cols=203 Identities=16% Similarity=0.259 Sum_probs=161.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.+ +.+|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 250 ~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 312 (491)
T PRK10982 250 ILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS--AGTITLHGKKI 312 (491)
T ss_pred EEEEeCccccc---------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC--ccEEEECCEEC
Confidence 47888887631 34899999999999999999999999999999999988764 69999999765
Q ss_pred ch----hhhcceeEEeecCC---CCCCCCCHHHHHHHHhhhhc-C-cc-CChhhHHHHHHHHHHHcCCC-CCccccccCC
Q 015591 258 VQ----ETFARVSGYCEQTD---IHSPQITVEESVIFSAWLRL-A-PE-INSKTKAEFVNEVLETIELD-GIKDSLVGIP 326 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~---~~~~~~Tv~e~l~~~~~~~~-~-~~-~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~ 326 (404)
.. ...++.++|++|+. .+++.+|+.+|..+...... . .. .......+.+.++++.+++. +..++.+
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 389 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI--- 389 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc---
Confidence 32 12355689999974 35778888877433211000 0 01 11222345678889988885 4456654
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+||||||||++|||+++.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++ ++.+.+|+++.
T Consensus 390 --~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~ 463 (491)
T PRK10982 390 --GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILV 463 (491)
T ss_pred --ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEE
Confidence 479999999999999999999999999999999999999999999999878999999999997 68889999875
No 317
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.7e-37 Score=321.08 Aligned_cols=206 Identities=18% Similarity=0.313 Sum_probs=159.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 588888888762 35699999999999999999999999999999999997543 1369999999764
Q ss_pred ch----hhhcceeEEeecCCCCCC--CCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCC
Q 015591 258 VQ----ETFARVSGYCEQTDIHSP--QITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVN 329 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~--~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~ 329 (404)
.. ...++.++|++|++.+++ ..++++++.++...... .........+.++++++.+++.+ ..++.+ .
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 400 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF-----H 400 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch-----h
Confidence 21 124567999999765433 35777766543211000 00011223456889999999986 667664 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEecCCCHHHHH-hcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG-RTIVCTIHQPSIDIFE-AFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~tH~~~~~i~~-~fd~~l~ 403 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||+++ ++.+ .+|++++
T Consensus 401 ~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~ 475 (490)
T PRK10938 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEF 475 (490)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEE
Confidence 799999999999999999999999999999999999999999999998765 47999999987 5655 5788765
No 318
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-38 Score=281.45 Aligned_cols=195 Identities=27% Similarity=0.402 Sum_probs=168.2
Q ss_pred ccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc---hhhhcceeEEeecCCCCC
Q 015591 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV---QETFARVSGYCEQTDIHS 276 (404)
Q Consensus 200 ~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~~~~~~~~g~v~Q~~~~~ 276 (404)
+++++.+|+++|+++++|.+++++|||||||||||.+++++.+.+ +|+|.++|.++. ...+.+.++..-|+....
T Consensus 10 ~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d--~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 10 SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD--SGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred hhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc--CceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 346788999999999999999999999999999999999988764 599999998753 356777888899988888
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDE 356 (404)
..+||+|-+.|+....... ...++....+++.++.++|.++.|+... +||||||||.-||..++.+.+.++|||
T Consensus 88 ~rlTV~dLv~FGRfPYSqG-Rlt~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQrQRAfIAMVlaQdTdyvlLDE 161 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQG-RLTKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQRQRAFIAMVLAQDTDYVLLDE 161 (252)
T ss_pred heeEHHHHhhcCCCcccCC-CCchHHHHHHHHHHHHhcccchHHHhHH-----hcccchhhhhhhheeeeccCcEEEecC
Confidence 8999999999986433221 2235667889999999999999998864 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|.++||.....++|+.|++++++ |+||+++.||.+. .--+.|+++.
T Consensus 162 PLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVA 208 (252)
T COG4604 162 PLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVA 208 (252)
T ss_pred cccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheee
Confidence 99999999999999999999976 9999999999984 3335677654
No 319
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-37 Score=320.88 Aligned_cols=193 Identities=20% Similarity=0.321 Sum_probs=157.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.| +++++|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++|.
T Consensus 2 l~i~~ls~~~-------------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQF-------------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS--AGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEe-------------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCC---
Confidence 6788888876 2356999999999999999999999999999999999988764 599999873
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHHHHHHHhh-hh----------cCcc------------------CChhhHHHHHHHH
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAW-LR----------LAPE------------------INSKTKAEFVNEV 309 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~-~~----------~~~~------------------~~~~~~~~~~~~~ 309 (404)
+.++|++|+...++.+||+||+.++.. .+ .... ....+..++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 358999998888888999999987531 00 0000 0001223567889
Q ss_pred HHHcCCCCCc-cccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q 015591 310 LETIELDGIK-DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH 388 (404)
Q Consensus 310 l~~l~l~~~~-~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH 388 (404)
++.+++.+.. +..+ ..||||||||++|||+|+.+|++|||||||++||+.++..+.+.|++ .|.|||++||
T Consensus 139 l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 9999997533 3333 47999999999999999999999999999999999999999999863 5899999999
Q ss_pred CCCHHHHHhcccccc
Q 015591 389 QPSIDIFEAFDEVKQ 403 (404)
Q Consensus 389 ~~~~~i~~~fd~~l~ 403 (404)
+++ .+.+.||+++.
T Consensus 211 d~~-~~~~~~d~i~~ 224 (530)
T PRK15064 211 DRH-FLNSVCTHMAD 224 (530)
T ss_pred CHH-HHHhhcceEEE
Confidence 997 67889999875
No 320
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=4.5e-37 Score=303.32 Aligned_cols=172 Identities=30% Similarity=0.418 Sum_probs=146.9
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChh
Q 015591 222 LMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300 (404)
Q Consensus 222 lvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~ 300 (404)
|+||||||||||+++|+|+.++. +|+|.++|.++.. ...++.++|++|+..+++.+||+||+.|+...+. ....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~--~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK---VPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC--ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC---CCHH
Confidence 68999999999999999998764 6999999987532 2245679999999888999999999999754321 2233
Q ss_pred hHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 015591 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT- 379 (404)
Q Consensus 301 ~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~- 379 (404)
+..+.++++++.+++.+..++.. .+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 34567889999999988777764 479999999999999999999999999999999999999999999998765
Q ss_pred CCeEEEEecCCCHHHHHhccccccC
Q 015591 380 GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 380 g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|+|+|++||+++ ++...+|+++++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl 174 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIM 174 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 899999999997 788999998753
No 321
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.6e-36 Score=319.72 Aligned_cols=194 Identities=24% Similarity=0.342 Sum_probs=157.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. +++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|. +|+|.+++.
T Consensus 6 ~l~i~~l~~~y~------------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~--~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVP------------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF--EGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeC------------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCC--
Confidence 488999998762 1356999999999999999999999999999999999998764 599998752
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhh-h-------------cCcc--C-----------------ChhhHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWL-R-------------LAPE--I-----------------NSKTKAE 304 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~-~-------------~~~~--~-----------------~~~~~~~ 304 (404)
..+|||+|++.+++.+||.||+.++... + .... . ...+..+
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 3589999998888889999999875321 0 0000 0 0001134
Q ss_pred HHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 015591 305 FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIV 384 (404)
Q Consensus 305 ~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii 384 (404)
.++++++.+++.. .++.+ .+|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 5778888888854 45554 479999999999999999999999999999999999999999999876 25999
Q ss_pred EEecCCCHHHHHhcccccc
Q 015591 385 CTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 385 ~~tH~~~~~i~~~fd~~l~ 403 (404)
++||+++ .+.+.+|+++.
T Consensus 215 iisHd~~-~~~~~~d~i~~ 232 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILE 232 (556)
T ss_pred EEeCCHH-HHHhhcCeEEE
Confidence 9999996 67788998875
No 322
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=3.9e-36 Score=321.53 Aligned_cols=205 Identities=22% Similarity=0.360 Sum_probs=171.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|+++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT--SGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEc
Confidence 48899999987420 11256999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hh----hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 258 VQ---ET----FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~---~~----~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
.. .. .++.++|++|+..+++..|+.||+.+...... ....+..+.+.++++.+++.+..|+.. ..
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG---LERKQRLLRAQELLQRLGLEDRVEYQP-----SQ 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhcCCc-----cc
Confidence 32 11 24679999999888888999999998653221 223445567889999999987777664 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ..+.+|+++.
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~ 215 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIE 215 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999998777999999999986 3457999875
No 323
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.7e-36 Score=319.99 Aligned_cols=187 Identities=24% Similarity=0.305 Sum_probs=159.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ +. .|+++||++++||+++|+||||||||||+++|+|+.+|. +|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~--~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD--EGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEe----
Confidence 488888887652 23 589999999999999999999999999999999998764 5999885
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
..++|++|+..+.+.+||+||+.+.... .. ....++++++.+++.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~---~~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG---SSYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cC---hHHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999987778889999999875311 11 1124678999999987777765 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+...+|+++++
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl 527 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVF 527 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999764 899999999987 677889998763
No 324
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.4e-37 Score=351.88 Aligned_cols=199 Identities=23% Similarity=0.265 Sum_probs=166.2
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|+|+. +.+++|+||||+|++||.+||+|+||||||||+++|.|+++ .+|+|++||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999998853 23579999999999999999999999999999999999875 36999999998
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC-------CCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-------DGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~vg~~ 326 (404)
+. ...+|+.++||+|++.++ ..|+||||.... .. .++.+.++++.+++ ++..|+.+++.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF-~GTIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIF-SGTFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccC-ccCHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 64 356788999999977765 469999996421 11 12345556665554 45678899886
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|. +||||||||++|||||+++|+|||||||||+||+++...|++.|++.. +++|||+|+|+++ ....||+++++
T Consensus 1351 G~-nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL 1424 (1490)
T TIGR01271 1351 GY-VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVI 1424 (1490)
T ss_pred CC-cCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEE
Confidence 54 699999999999999999999999999999999999999999999865 5899999999986 45569999863
No 325
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.5e-36 Score=291.11 Aligned_cols=186 Identities=22% Similarity=0.320 Sum_probs=144.0
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
...++++|+++. .+.+|+|+||++++||+++|+|+||||||||+++|+|++++. +|+|.++|
T Consensus 37 ~~~l~i~nls~~---------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~--~G~I~i~g- 98 (282)
T cd03291 37 DNNLFFSNLCLV---------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS--EGKIKHSG- 98 (282)
T ss_pred CCeEEEEEEEEe---------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECC-
Confidence 345899999873 145999999999999999999999999999999999998764 59999987
Q ss_pred cCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-------CCccccccCCCC
Q 015591 256 PKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-------GIKDSLVGIPGV 328 (404)
Q Consensus 256 ~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~vg~~~~ 328 (404)
.++|++|++.+++ .|++||+.+..... . . .+.+.++.+++. ...++.++.+ .
T Consensus 99 ---------~i~yv~q~~~l~~-~tv~enl~~~~~~~------~-~---~~~~~l~~~~l~~~l~~~~~~~~~~~~~~-~ 157 (282)
T cd03291 99 ---------RISFSSQFSWIMP-GTIKENIIFGVSYD------E-Y---RYKSVVKACQLEEDITKFPEKDNTVLGEG-G 157 (282)
T ss_pred ---------EEEEEeCcccccc-cCHHHHhhcccccC------H-H---HHHHHHHHhCCHHHHHhccccccceecCC-C
Confidence 3899999876665 59999998753210 0 0 111222222222 1223333322 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV-KNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l-~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||+|||||++|||+|+.+|++|||||||+|||+.++..+.+.+ +++. ++.|||++||+++. + ..+|+++.
T Consensus 158 ~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~ 230 (282)
T cd03291 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILI 230 (282)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEE
Confidence 479999999999999999999999999999999999999999865 5554 58999999999873 4 57999875
No 326
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-37 Score=287.60 Aligned_cols=180 Identities=26% Similarity=0.409 Sum_probs=158.1
Q ss_pred eeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc-------hhhhcceeEEeecCCCCCCCCC
Q 015591 208 YDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV-------QETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 208 ~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~-------~~~~~~~~g~v~Q~~~~~~~~T 280 (404)
=+++|..+.-.++||.|+||||||||+|+|+|+..|+ +|.|.+||..+. ....+|++|||||+-.+||.+|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd--eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc--ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 3678888875799999999999999999999998875 599999997432 1235788999999999999999
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsg 360 (404)
|+.||.|+.+.. .....+++++.+|+.++.+.. +..|||||||||+|+|||+..|++|+||||.|+
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~-----P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRY-----PGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhhC-----CCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999986421 345678999999999998876 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 361 LDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||-..+.+++-.|++|.++ +..|+.+||.+. |+..+.|+++++
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~l 202 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVL 202 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEe
Confidence 9999999999999999876 889999999986 899999998763
No 327
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-36 Score=315.76 Aligned_cols=186 Identities=20% Similarity=0.268 Sum_probs=155.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~--~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD--SGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCc--
Confidence 588999998763 356999999999999999999999999999999999988764 599999873
Q ss_pred chhhhcceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCHH
Q 015591 258 VQETFARVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgG 334 (404)
+.+||++|+.. +.+.+|++|++.+.. .. ....+.++++++.+++. +..++.+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 46899999753 445789999986421 11 11234578889999984 4556654 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||++ .+...+|+++.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~ 507 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIE 507 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999876 359999999997 68888999875
No 328
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.8e-36 Score=323.06 Aligned_cols=195 Identities=15% Similarity=0.246 Sum_probs=156.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+ +++++|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.+++
T Consensus 451 ~i~~~nv~~~~~------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~--~G~i~~~~--- 513 (659)
T TIGR00954 451 GIKFENIPLVTP------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY--GGRLTKPA--- 513 (659)
T ss_pred eEEEEeeEEECC------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEeecC---
Confidence 589999999763 1346999999999999999999999999999999999988764 59998764
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccc------cccCCCCCCC
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS------LVGIPGVNGL 331 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~------~vg~~~~~~L 331 (404)
++.++||+|++.+++. |++||+.++........ .....+.++++++.+++.+..++ ..+. ...|
T Consensus 514 -----~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~--~~~L 583 (659)
T TIGR00954 514 -----KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDW--MDVL 583 (659)
T ss_pred -----CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCccccccc--ccCC
Confidence 3568999998876655 99999998643211000 01123456788888888764433 3322 2479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||++|||||+++|+++||||||++||+.++..+.+.+++ .|+|+|++||+++ ..+.+|+++++
T Consensus 584 SgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l 651 (659)
T TIGR00954 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYM 651 (659)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEE
Confidence 99999999999999999999999999999999999999998875 4899999999987 35789998763
No 329
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5e-36 Score=315.74 Aligned_cols=194 Identities=23% Similarity=0.295 Sum_probs=155.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+ +++++|+|+||+|++|++++|+|||||||||||++|+|+.+|. +|+|.+++.
T Consensus 4 ~i~~~nls~~~~------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~--~G~i~~~~~-- 67 (552)
T TIGR03719 4 IYTMNRVSKVVP------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF--NGEARPAPG-- 67 (552)
T ss_pred EEEEeeEEEecC------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCC--
Confidence 478899998763 1356999999999999999999999999999999999998764 599998752
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhh-hc----------CccCChhh----------------------HHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWL-RL----------APEINSKT----------------------KAE 304 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~-~~----------~~~~~~~~----------------------~~~ 304 (404)
..+|||+|++.+++.+||+||+.++... +. .......+ ...
T Consensus 68 ------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 68 ------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred ------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 4689999998888899999999875321 00 00000000 113
Q ss_pred HHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 015591 305 FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIV 384 (404)
Q Consensus 305 ~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii 384 (404)
.+.++++.+++.. .+..+ ..||||||||++|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4566777777753 44443 479999999999999999999999999999999999999999999875 35999
Q ss_pred EEecCCCHHHHHhcccccc
Q 015591 385 CTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 385 ~~tH~~~~~i~~~fd~~l~ 403 (404)
+|||+++ .+...+|+++.
T Consensus 213 iisHd~~-~~~~~~d~v~~ 230 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILE 230 (552)
T ss_pred EEeCCHH-HHHhhcCeEEE
Confidence 9999997 67788998875
No 330
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.3e-36 Score=287.38 Aligned_cols=182 Identities=21% Similarity=0.260 Sum_probs=149.2
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE-----------ECCccCchh--h-hc--ceeEE
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK-----------IGGYPKVQE--T-FA--RVSGY 268 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~-----------i~G~~~~~~--~-~~--~~~g~ 268 (404)
.+|+|+| .+++||+++|+||||||||||+++|+|+.++. +|+|. ++|.+.... . .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~--~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN--LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC--CceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5899999 59999999999999999999999999998874 59996 778765321 1 11 23688
Q ss_pred eecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcC
Q 015591 269 CEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVAN 348 (404)
Q Consensus 269 v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~ 348 (404)
++|.....+ .++.+++.+.. ......+.+.++++.+++.+..++.. ..||+|||||++|||+|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIP-KAVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCc-hHHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhC
Confidence 888766666 47888887642 11223456788999999987666553 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 349 PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 349 p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|++++|||||++||+.++..+.+.|++++++|+|||++||+++ .+...+|+++.+
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l 212 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCL 212 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999877999999999986 577789998753
No 331
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.4e-36 Score=314.61 Aligned_cols=189 Identities=24% Similarity=0.328 Sum_probs=156.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+.+|. +|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~--~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD--SGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCc--
Confidence 588999998762 356999999999999999999999999999999999988764 599998542
Q ss_pred chhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHH
Q 015591 258 VQETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGq 335 (404)
..+||++|+. .+++.+||+||+.+...... ... ....++++++.+++.+ ..++.+ .+|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGN--REIPSRAYVGRFNFKGGDQQKKV-----GVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---ccc--cHHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1589999985 67788999999998643221 111 1123457889999864 446654 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++. | |||++||+++ .+...||+++.
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~ 514 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILA 514 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999862 4 8999999987 68888999875
No 332
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.4e-36 Score=345.39 Aligned_cols=191 Identities=24% Similarity=0.358 Sum_probs=154.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|++|.|+.. .++++|+|+|+++++||.++|+||||||||||+++|.|.+++. +|.+.
T Consensus 614 ~I~~~~vsF~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~--~G~i~------ 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK----------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA--ETSSV------ 675 (1495)
T ss_pred cEEEEeeEEEcCCC----------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc--CCCEE------
Confidence 59999999988521 1356999999999999999999999999999999999988764 46552
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCCCCCC
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~~~~~ 330 (404)
.+++.++||+|++.++ +.|++|||.|+.. .+. ++.+++++.. .+++..++.+|+.|. +
T Consensus 676 ---~~~~~Iayv~Q~p~Lf-~gTIreNI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~-~ 740 (1495)
T PLN03232 676 ---VIRGSVAYVPQVSWIF-NATVRENILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGV-N 740 (1495)
T ss_pred ---EecCcEEEEcCccccc-cccHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCc-c
Confidence 2456799999977654 6799999999742 111 2233333333 356677899999876 5
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA-VKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~-l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||||++||||++++|+|+|||||||+||+++++++++. ++... +|+|+|++||+++ ..+.+|+++++
T Consensus 741 LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~--~l~~aD~Ii~L 812 (1495)
T PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLH--FLPLMDRIILV 812 (1495)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChh--hHHhCCEEEEE
Confidence 999999999999999999999999999999999999988765 55443 6899999999986 57789998753
No 333
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1e-35 Score=313.31 Aligned_cols=189 Identities=23% Similarity=0.324 Sum_probs=155.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|. +|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD--SGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CeEEEECCc--
Confidence 588999988762 356999999999999999999999999999999999987764 699998542
Q ss_pred chhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHH
Q 015591 258 VQETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGq 335 (404)
..+||++|+. .+++.+|++||+.++..... .... ...++++++.+++.+ ..++.+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1589999975 46788999999998643211 1111 223557899999864 446554 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||++ .+...+|+++.
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~ 512 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILA 512 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999873 4 8999999986 67788999875
No 334
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-36 Score=264.29 Aligned_cols=186 Identities=27% Similarity=0.380 Sum_probs=161.5
Q ss_pred cccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch--hhhcceeEEee
Q 015591 193 EMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ--ETFARVSGYCE 270 (404)
Q Consensus 193 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~g~v~ 270 (404)
+.+++++..+++.++.++||++.+||.+-|.|||||||||||++|+|+..|. +|+|.++|.++.. +++++..-|+-
T Consensus 4 ~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~--~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 4 EAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD--AGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred hhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC--CCeEEecCCCCccchhhHHHHHHHhh
Confidence 3455666677888999999999999999999999999999999999998875 5999999987543 23556667777
Q ss_pred cCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 015591 271 QTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS 350 (404)
Q Consensus 271 Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~ 350 (404)
.++.+-+.+|+.||+.|....... ...+.+.+.++.+||.+..|.+++ .||-|||||++|||-++..++
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCC
Confidence 778888899999999998765442 123457889999999999999876 699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 351 IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 351 iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
+.|||||+++||.+....+-..+...+.+|-.||.+||||.
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 99999999999999999999999998888999999999985
No 335
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=6.6e-36 Score=278.15 Aligned_cols=173 Identities=18% Similarity=0.199 Sum_probs=138.2
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE-ECCccCchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK-IGGYPKVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~-i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
+|+||||++++||+++|+||||||||||+++|+|+.++. +|+|. ++|.... +.+...+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--sG~i~~~~~~~~~----------~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD--EGDFIGLRGDALP----------LGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC--CCCEEEecCceec----------cccccccCCcCcHHHH
Confidence 799999999999999999999999999999999988764 59997 7775321 2234557788999999
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
+.+...... ....+ ..+.+.+.+++.+..++.++ .||+|||||++|||||+.+|+++||||||+++|+.
T Consensus 70 l~~~~~~~~---~~~~~---~~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDE---FSHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHH---HHHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998654332 11111 12334455677766666653 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 365 AAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 365 ~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++..+.+.+.+.. +++|+|++||+++ ++...+|+++.
T Consensus 139 ~~~~~~~~l~~~~-~~~~ii~vsH~~~-~~~~~~d~i~~ 175 (213)
T PRK15177 139 TQLRMQAALACQL-QQKGLIVLTHNPR-LIKEHCHAFGV 175 (213)
T ss_pred HHHHHHHHHHHHh-hCCcEEEEECCHH-HHHHhcCeeEE
Confidence 9999999886544 3578999999997 67788999875
No 336
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.4e-36 Score=343.36 Aligned_cols=189 Identities=21% Similarity=0.366 Sum_probs=154.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcee-eEEEECCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME-GEIKIGGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~-G~I~i~G~~ 256 (404)
.++++|++|.|+.. .++++|+|+|+++++||.++|+||||||||||+++|.|.+++ .+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~GG~I~l---- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK----------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP--RSDASVVI---- 677 (1622)
T ss_pred ceEEEeeEEEccCC----------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc--CCCceEEE----
Confidence 59999999988521 135699999999999999999999999999999999998875 47 89875
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCCCCC
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIPGVN 329 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~~~~ 329 (404)
++.++||+|++.+ ++.||||||.|+... + +++.+++++.. .|++..++.+|+.|.
T Consensus 678 ------~~~Iayv~Q~p~L-fngTIreNI~fg~~~------d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~- 739 (1622)
T PLN03130 678 ------RGTVAYVPQVSWI-FNATVRDNILFGSPF------D----PERYERAIDVTALQHDLDLLPGGDLTEIGERGV- 739 (1622)
T ss_pred ------cCeEEEEcCcccc-CCCCHHHHHhCCCcc------c----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCC-
Confidence 3468999997665 567999999997421 1 12233444433 345677899999876
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR-AVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+||||||||++||||++++|+|+|||||||+||++++++|.+ .++.+. +|+|+|++||+++ ..+.+|+++.
T Consensus 740 ~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~ 811 (1622)
T PLN03130 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIIL 811 (1622)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEE
Confidence 599999999999999999999999999999999999998864 566554 5899999999985 5788999875
No 337
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.7e-35 Score=286.12 Aligned_cols=219 Identities=25% Similarity=0.334 Sum_probs=183.1
Q ss_pred CCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 175 EPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
.+.-++.+|+...|+.+..+-.. ......++++||+++++||.++|+|+||||||||-..|.++..+ +|+|.++|
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G 347 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDG 347 (534)
T ss_pred CCceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECC
Confidence 44568999998888765332111 11335699999999999999999999999999999999998764 49999999
Q ss_pred ccCch------hhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 255 YPKVQ------ETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 255 ~~~~~------~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
+++.. ..+|+.+-.|||++ .+.|.+||.+-+.-+...+.+ ..+.+++.+++.++++.+||+. ++...+
T Consensus 348 ~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp--~~r~RY- 423 (534)
T COG4172 348 QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDP--ATRNRY- 423 (534)
T ss_pred ccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCCh--hHhhcC-
Confidence 98642 34577889999986 467999999999988766543 4567888999999999999975 233334
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+++.|||||||++||||++.+|++++||||||+||-.-+.+|+++|++|.+ .|.+-++|+||+. -+-.+||+++++
T Consensus 424 -PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm 500 (534)
T COG4172 424 -PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVM 500 (534)
T ss_pred -CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEE
Confidence 478999999999999999999999999999999999999999999999975 4999999999997 688899999863
No 338
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.7e-35 Score=258.94 Aligned_cols=138 Identities=30% Similarity=0.461 Sum_probs=123.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|. +.++++++||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~~~---- 62 (144)
T cd03221 2 ELENLSKTYG-------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD--EGIVTWGST---- 62 (144)
T ss_pred EEEEEEEEEC-------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECCe----
Confidence 5677777652 346999999999999999999999999999999999998764 699999984
Q ss_pred hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHH
Q 015591 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL 339 (404)
Q Consensus 260 ~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl 339 (404)
+.++|++| ||+||+||+
T Consensus 63 ----~~i~~~~~-----------------------------------------------------------lS~G~~~rv 79 (144)
T cd03221 63 ----VKIGYFEQ-----------------------------------------------------------LSGGEKMRL 79 (144)
T ss_pred ----EEEEEEcc-----------------------------------------------------------CCHHHHHHH
Confidence 46788887 899999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|||||+.+|++++|||||+|||+.++..+.+.++++ ++|+|++||+++ ++.+.+|+++.
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~ 139 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIE 139 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999876 479999999986 67788999875
No 339
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-35 Score=267.07 Aligned_cols=206 Identities=24% Similarity=0.336 Sum_probs=172.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+.++. +++++|++||++|++||+.+||||||||||||.++|+|...+..++|+|.++|+++
T Consensus 3 ~L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 478888888763 12589999999999999999999999999999999999987777889999999985
Q ss_pred ch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCC
Q 015591 258 VQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LS 332 (404)
.. +..+..+...+|.|.-.|..|+.+.|+.+...+........+....+++.++.+++++ ..++.+. .++|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 32 4456778889999999999999999988765432211112345667888999999986 5666665 3799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhc--ccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAF--DEV 401 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~f--d~~ 401 (404)
||||||..|+..++.+|++.|||||-||||..+-+.|.+.++++++.|.++++|||.. +++.+. |++
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~v 215 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKV 215 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEE
Confidence 9999999999999999999999999999999999999999999998899999999985 466665 544
No 340
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-35 Score=277.32 Aligned_cols=176 Identities=29% Similarity=0.381 Sum_probs=147.1
Q ss_pred EEEEeceeEEeeccccccccccccC-ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEK-KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
.++++||++.|..... +... ...+++||||++++||+++|||+||||||||-|+|.|+..|. +|+|.++|.+
T Consensus 4 ll~v~~l~k~f~~~~~-----~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f~g~~ 76 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-----FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT--SGEILFEGKD 76 (268)
T ss_pred eEEEeccEEEEecccc-----cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEEcCcc
Confidence 4788999998865321 1111 247999999999999999999999999999999999998874 5999999987
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHH
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGq 335 (404)
+.... ..+..+++.++++.+|+.. ..++. +++|||||
T Consensus 77 i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ry-----PhelSGGQ 114 (268)
T COG4608 77 ITKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYRY-----PHELSGGQ 114 (268)
T ss_pred hhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcC-----CcccCchh
Confidence 43211 2344567889999999764 33333 47899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||+.|||||+.+|+++++|||||+||...+.+|+++|+++.++ |.|.+++|||++ .+..++|++.+
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~V 182 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAV 182 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEE
Confidence 99999999999999999999999999999999999999999865 999999999998 58888998865
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.1e-35 Score=265.51 Aligned_cols=133 Identities=26% Similarity=0.369 Sum_probs=118.0
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
+++.+++++ +++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+ ++|++|...
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~---------i~~~~q~~~------- 71 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWDGIT---------PVYKPQYID------- 71 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CcEEEECCEE---------EEEEcccCC-------
Confidence 456788884 999999999999999999999999999998764 5999999842 678777321
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
||+|||||++|||+|+.+|++++|||||++|
T Consensus 72 -------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 72 -------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCC-CeEEEEecCCCHHHHHhcccccc
Q 015591 362 DARAAAIIMRAVKNVVDTG-RTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 362 D~~~~~~i~~~l~~l~~~g-~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+.++..+.+.++++++++ .|||++||+++ .+...+|+++.
T Consensus 103 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~ 144 (177)
T cd03222 103 DIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHV 144 (177)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEE
Confidence 9999999999999987664 99999999986 57778998865
No 342
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-35 Score=252.59 Aligned_cols=181 Identities=26% Similarity=0.326 Sum_probs=156.4
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCccCch-hhhcceeEEeecCCCCCCCC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~ 279 (404)
++.-+|-|+|++|.+||++.||||||||||||+..+.|...+. ..+|++++|++.++. ...+|.+|+.+|++.+||.+
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 4567999999999999999999999999999999999965443 457999999987643 34578899999999999999
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
+|.+|+.|+. +..+....++..+...++..+|.+..+.. +..||||||-|+++-|+|+..|+.++||||+|
T Consensus 93 sVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 93 SVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred ccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 9999999964 44455556777889999999999877764 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH-HhCCCeEEEEecCCC
Q 015591 360 GLDARAAAIIMRAVKNV-VDTGRTIVCTIHQPS 391 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l-~~~g~tii~~tH~~~ 391 (404)
.||..-+.++.+.+-.- ...|..+|.+|||..
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99999999999877554 446999999999975
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=6.3e-35 Score=311.86 Aligned_cols=190 Identities=23% Similarity=0.338 Sum_probs=155.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++.+|+|+||+|++|++++|+|||||||||||++|+|+.+|. +|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~--~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQI-------------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD--SGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEE-------------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEE-CCCc
Confidence 58888888876 2456999999999999999999999999999999999987764 599998 4321
Q ss_pred chhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCHHH
Q 015591 258 VQETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgGq 335 (404)
.+||++|+. .+++.+||.||+.+..... ... .....+.++++.+++. +..++.+ ..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 589999974 5778899999998753211 011 1134567888888885 3456654 3699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||.. .+...+|+++.+
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l 510 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIF 510 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999875 459999999986 577889998753
No 344
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=6.8e-35 Score=263.03 Aligned_cols=152 Identities=23% Similarity=0.362 Sum_probs=125.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
.+++|+|+||++++|++++|+|||||||||||++|.+ .+|++.++|.... ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~--~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPK--FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcccc--cccccEEEEhH-----------
Confidence 4679999999999999999999999999999999963 2599999886321 12334677766
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVAN--PSIIFMDEPTT 359 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~--p~iLlLDEPts 359 (404)
.++++.+++... .++.. ..||+|||||++|||||+.+ |++|||||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 135666677642 44442 47999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+||+.++..+.+.|++++++|+|||++||+++. + ..+|+++.+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l 161 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDF 161 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEE
Confidence 999999999999999987779999999999863 4 679998753
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-34 Score=308.01 Aligned_cols=186 Identities=22% Similarity=0.304 Sum_probs=152.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+.++||++.| +++.+|+|+||+|++|+++||+|||||||||||++|+|..+|. +|+|.+++.
T Consensus 312 ~l~~~~l~~~y-------------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~--~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGY-------------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV--SGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCC--
Confidence 58889998876 2457999999999999999999999999999999999988764 599999742
Q ss_pred chhhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHH
Q 015591 258 VQETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgG 334 (404)
..+||++|+. .+.+..|+.+++... . .....+.+.++++.+++.. ..++.++ .||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~~-----~----~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLARL-----A----PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHHh-----C----chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHH
Confidence 2589999963 234566787775321 0 1122356788999999963 4566653 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++ .| |||+||||+. .+...||+++.+
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l 500 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLV 500 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999986 34 9999999986 578889998753
No 346
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-34 Score=306.18 Aligned_cols=192 Identities=22% Similarity=0.281 Sum_probs=148.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||+++| +++.+|+||||+|++|+++||+||||||||||||+|+|..+|+ +|+|.++|..
T Consensus 2 i~i~nls~~~-------------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd--~G~I~~~~~~-- 64 (638)
T PRK10636 2 IVFSSLQIRR-------------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD--GGSYTFPGNW-- 64 (638)
T ss_pred EEEEEEEEEe-------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCCC--
Confidence 6788888876 3467999999999999999999999999999999999987764 5999998742
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHHHHHHHhh-----------------------hhcC-ccCChhhHHHHHHHHHHHcC
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAW-----------------------LRLA-PEINSKTKAEFVNEVLETIE 314 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~-----------------------~~~~-~~~~~~~~~~~~~~~l~~l~ 314 (404)
.++|++|..... ..|+.+.+.-... +... ...........++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 368888854322 3455554431100 0000 00001122356788999999
Q ss_pred CC-CCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH
Q 015591 315 LD-GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSID 393 (404)
Q Consensus 315 l~-~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~ 393 (404)
+. +..++.++ .|||||||||+|||+|+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||+. .
T Consensus 138 l~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~ 208 (638)
T PRK10636 138 FSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-F 208 (638)
T ss_pred CCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-H
Confidence 96 45666654 69999999999999999999999999999999999999999988864 579999999987 5
Q ss_pred HHHhcccccc
Q 015591 394 IFEAFDEVKQ 403 (404)
Q Consensus 394 i~~~fd~~l~ 403 (404)
+...||+++.
T Consensus 209 l~~~~d~i~~ 218 (638)
T PRK10636 209 LDPIVDKIIH 218 (638)
T ss_pred HHHhcCEEEE
Confidence 7788999875
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-34 Score=253.78 Aligned_cols=139 Identities=35% Similarity=0.563 Sum_probs=123.5
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~T 280 (404)
+.+++++|+++++|++++|+|+||||||||+++|+|..++. +|+|.++|.+... ...++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~--~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT--SGEILIDGKDIAKLPLEELRRRIGYVPQ--------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCEEcccCCHHHHHhceEEEee---------
Confidence 46999999999999999999999999999999999988764 6999999986432 234566888887
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsg 360 (404)
||+||+||++|||+++.+|++++|||||+|
T Consensus 81 --------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 81 --------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||..++..+.+.++++.+.++|++++||+++ ++...+|+++.+
T Consensus 111 lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l 153 (157)
T cd00267 111 LDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVL 153 (157)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999998766899999999986 566678988753
No 348
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.4e-35 Score=271.46 Aligned_cols=190 Identities=27% Similarity=0.375 Sum_probs=158.4
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc--hhhhcceeEEeecC-CCCCCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV--QETFARVSGYCEQT-DIHSPQIT 280 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~--~~~~~~~~g~v~Q~-~~~~~~~T 280 (404)
..+.+||||+|++|++++++|||||||||+||+|+|...|. +|.|.++|.+.. .+.+-+.+++|+-+ -.+.-.+-
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~--~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT--SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC--CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 45899999999999999999999999999999999998874 599999998632 23445567776533 33334445
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsg 360 (404)
+.|.+..-.... +++.++-+++.+.+.+.+++++..+..+ +.||-|||.|+.||.+|+++|++|||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 777766543332 4556666788899999999998888775 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 361 LDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||..++..|.+.|++..+ ++.||+.+||+.+ ++...||+++.+
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I 230 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLI 230 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEe
Confidence 999999999999999975 5999999999998 899999999864
No 349
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.7e-34 Score=328.40 Aligned_cols=193 Identities=25% Similarity=0.361 Sum_probs=153.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|++|.|+. .++++|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|
T Consensus 636 ~i~~~~~~~~~~~-----------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~--~G~i~~~g--- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR-----------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV--EGHVHMKG--- 699 (1522)
T ss_pred cEEEEEeEEEcCC-----------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC--CcEEEECC---
Confidence 5999999998742 2246999999999999999999999999999999999988764 69999987
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHH---HHHHcC-CCCCccccccCCCCCCCCH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNE---VLETIE-LDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~l~-l~~~~~~~vg~~~~~~LSg 333 (404)
.++||+|++.+ ++.|++||+.|+... .. ++.+.+.+ +.+.++ +++..++.+|+.|. +|||
T Consensus 700 -------~i~yv~Q~~~l-~~~Ti~eNI~~g~~~------~~-~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~-~LSG 763 (1522)
T TIGR00957 700 -------SVAYVPQQAWI-QNDSLRENILFGKAL------NE-KYYQQVLEACALLPDLEILPSGDRTEIGEKGV-NLSG 763 (1522)
T ss_pred -------EEEEEcCCccc-cCCcHHHHhhcCCcc------CH-HHHHHHHHHhCCHHHHHhcCCCCCceecCCCC-CCCH
Confidence 48999998765 568999999986421 11 11111111 112222 34456788888765 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV--VDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l--~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++||||++++|++++||||||+||+.+++.+.+.+.+. ..+|+|+|++||+++ ....+|+++.+
T Consensus 764 GQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l 834 (1522)
T TIGR00957 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVM 834 (1522)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEe
Confidence 9999999999999999999999999999999999999998753 235899999999986 35569998753
No 350
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.2e-35 Score=258.82 Aligned_cols=202 Identities=25% Similarity=0.349 Sum_probs=167.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC-cc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG-YP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G-~~ 256 (404)
.++.+||+.++ +...+|+|+||++.+||+-+|+|||||||||++++|+|...|. +|+++++| .+
T Consensus 5 iL~~~~vsVsF-------------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~--~G~v~f~g~~d 69 (249)
T COG4674 5 ILYLDGVSVSF-------------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ--EGEVLFDGDTD 69 (249)
T ss_pred eEEEeceEEEE-------------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC--cceEEEcCchh
Confidence 36677777655 4677999999999999999999999999999999999976664 59999999 55
Q ss_pred Cch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-----ccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 257 KVQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-----PEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 257 ~~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
+.. +-.|..||--+|.+..|..+||+|||..+...... ......+.++++++++...+|.+..+...+
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~--- 146 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA--- 146 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh---
Confidence 421 23456789999999999999999999986432110 001123455789999999999998888765
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
.||.||||++.|++-++.+|++|+||||++|+-.+...+.-++|+.++ ..++|+++.||... +-++.|+|
T Consensus 147 --~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la-~~hsilVVEHDM~F-vr~~A~~V 216 (249)
T COG4674 147 --LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA-GKHSILVVEHDMGF-VREIADKV 216 (249)
T ss_pred --hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHh-cCceEEEEeccHHH-HHHhhhee
Confidence 599999999999999999999999999999999999999999999997 57999999999863 56666665
No 351
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.8e-34 Score=304.78 Aligned_cols=178 Identities=24% Similarity=0.294 Sum_probs=147.2
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE-----------ECCccCchh--h---hcceeE
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK-----------IGGYPKVQE--T---FARVSG 267 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~-----------i~G~~~~~~--~---~~~~~g 267 (404)
..+|++++ .+++||+++|+||||||||||+|+|+|..+|. +|+|. ++|.++... . .+..++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~--~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN--LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC--CccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 35899999 99999999999999999999999999988774 59997 888875321 1 112345
Q ss_pred EeecCCCCCC---CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHH
Q 015591 268 YCEQTDIHSP---QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVE 344 (404)
Q Consensus 268 ~v~Q~~~~~~---~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAra 344 (404)
+.+|.....+ ..||+|++... +..+.++++++.+++.+..|+.++ +||||||||++||+|
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~a 226 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAA 226 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHH
Confidence 6565433333 34999998641 123457889999999887777754 799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 345 LVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 345 L~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|+++ ++...+|++++
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~v 283 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHI 283 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999987 999999999997 68888999865
No 352
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.1e-33 Score=300.07 Aligned_cols=192 Identities=23% Similarity=0.262 Sum_probs=146.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+++|. ++.+|+||||++++|++++|+|||||||||||++|+|..+|. +|+|.++|..
T Consensus 3 ~l~i~~ls~~~~-------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~--~G~I~~~~~~- 66 (635)
T PRK11147 3 LISIHGAWLSFS-------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD--DGRIIYEQDL- 66 (635)
T ss_pred EEEEeeEEEEeC-------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CeEEEeCCCC-
Confidence 378889988763 356999999999999999999999999999999999987764 5999998732
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHh------------------------------hhhc-CccCChhhHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSA------------------------------WLRL-APEINSKTKAEFV 306 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~------------------------------~~~~-~~~~~~~~~~~~~ 306 (404)
.++|++|.+......++.+++..+. .+.. ............+
T Consensus 67 -------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 139 (635)
T PRK11147 67 -------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRI 139 (635)
T ss_pred -------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 2466666543333345555442110 0000 0000011223567
Q ss_pred HHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q 015591 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCT 386 (404)
Q Consensus 307 ~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~ 386 (404)
+++++.+++.. ++.+ ..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+|
T Consensus 140 ~~~l~~lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvliv 209 (635)
T PRK11147 140 NEVLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFI 209 (635)
T ss_pred HHHHHhCCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEE
Confidence 88999999863 4443 479999999999999999999999999999999999999999999886 3599999
Q ss_pred ecCCCHHHHHhcccccc
Q 015591 387 IHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 387 tH~~~~~i~~~fd~~l~ 403 (404)
|||+. .+...+|+++.
T Consensus 210 sHd~~-~l~~~~d~i~~ 225 (635)
T PRK11147 210 SHDRS-FIRNMATRIVD 225 (635)
T ss_pred eCCHH-HHHHhcCeEEE
Confidence 99987 57788999875
No 353
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.1e-33 Score=301.89 Aligned_cols=190 Identities=17% Similarity=0.256 Sum_probs=149.8
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|+++.|+ +++.+|+|+||+|++|++++|+|||||||||||++|+|+.+|. +|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~--~G~I~~~~~- 571 (718)
T PLN03073 507 PIISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS--SGTVFRSAK- 571 (718)
T ss_pred ceEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CceEEECCc-
Confidence 3588999998773 1245999999999999999999999999999999999988764 599998752
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHH
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGq 335 (404)
..+||++|+. .+.+++.++..+......+ .. ..+.+.++++.+++.+ ..++.+ ..|||||
T Consensus 572 -------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGq 632 (718)
T PLN03073 572 -------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQPM-----YTLSGGQ 632 (718)
T ss_pred -------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcCCc-----cccCHHH
Confidence 3589999964 2445666664432111111 11 1345778899999973 445543 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||++|||+|+.+|++|||||||+|||+.++..+++.|++. .| |||++|||+. .+...||+++.+
T Consensus 633 kqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l 697 (718)
T PLN03073 633 KSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVV 697 (718)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999998888764 34 9999999987 578889998753
No 354
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=272.90 Aligned_cols=211 Identities=22% Similarity=0.294 Sum_probs=174.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~ 255 (404)
++++|++..+.. ..+...++++|||++++||.+||||+||||||-..+.++|+++.. ..+|+|.++|.
T Consensus 7 L~v~nLsV~f~~---------~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~ 77 (534)
T COG4172 7 LSIRNLSVAFHQ---------EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGE 77 (534)
T ss_pred eeeeccEEEEec---------CCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcCh
Confidence 788888877643 234678999999999999999999999999999999999976542 23689999999
Q ss_pred cCc---hhhhc----ceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 256 PKV---QETFA----RVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 256 ~~~---~~~~~----~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
++- ...++ ..|+++||++. +.|-.|+...+.-...++ ...+.++.++++.++++.+|+.+-...+-.+|
T Consensus 78 dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP 155 (534)
T COG4172 78 DLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAYP 155 (534)
T ss_pred hhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhCC
Confidence 742 22232 36899999864 567788888887665544 34556677788999999999988766666665
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||||||.||.||+.+|++||.||||++||...+.+|+++|++|.++ |+++++||||+. -+-...|+|.+
T Consensus 156 --HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~V 230 (534)
T COG4172 156 --HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYV 230 (534)
T ss_pred --cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEE
Confidence 689999999999999999999999999999999999999999999999765 999999999997 46677888865
No 355
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.5e-34 Score=257.17 Aligned_cols=193 Identities=23% Similarity=0.367 Sum_probs=154.6
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh---hhcceeEEeecCCC--CCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE---TFARVSGYCEQTDI--HSP 277 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~---~~~~~~g~v~Q~~~--~~~ 277 (404)
.+++|+++|++|.+|+++.|+|.||||||||+++|+|...++ +|+|.|+|.++... .....++-|+|++. ..+
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t--~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT--SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC--CceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 467999999999999999999999999999999999988764 59999999986542 22334677899763 579
Q ss_pred CCCHHHHHHHHhhhhcCccCC---hhhHHHHHHHHHHHc--CCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 015591 278 QITVEESVIFSAWLRLAPEIN---SKTKAEFVNEVLETI--ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 352 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~l--~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iL 352 (404)
.+|+.||+..+..-....... ...+.+...+-+..+ |+++..++.+| -|||||||-++++.|-++.|+||
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pkiL 170 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKIL 170 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcEE
Confidence 999999999875321111121 122333444445544 55777777776 49999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 353 FMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 353 lLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|||-|++|||.++..|++.-.++.++ +.|.+||||+++ +...+-+|++.
T Consensus 171 LLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlIm 221 (263)
T COG1101 171 LLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIM 221 (263)
T ss_pred EecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEE
Confidence 999999999999999999999998754 789999999997 56777777664
No 356
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.9e-33 Score=319.27 Aligned_cols=180 Identities=24% Similarity=0.360 Sum_probs=142.2
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
+++|+|+|+++++|++++|+|||||||||||++|+|+.++. +|+|.++| .++||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~--~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS--EGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 46999999999999999999999999999999999998864 59999987 3899999887665 59999
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
|+.|+.... ........+....++.++. +++..++.+|+.|. .||||||||++||||++.+|+++|||||||+||+
T Consensus 506 NI~~g~~~~-~~~~~~~~~~~~L~~~l~~--l~~g~~t~vg~~g~-~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 506 NIIFGLSYD-EYRYTSVIKACQLEEDIAL--FPEKDKTVLGEGGI-TLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred HHHhccccc-hHHHHHHHHHHhHHHHHHh--ccccccccccCcCC-CcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 999874211 0000000011112233332 33445677888764 6999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 364 RAAAIIMRA-VKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 364 ~~~~~i~~~-l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.++..+++. ++++. +|+|+|++||+++. .+.+|+++.
T Consensus 582 ~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~ 619 (1490)
T TIGR01271 582 VTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILL 619 (1490)
T ss_pred HHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEE
Confidence 999999974 66665 58999999999963 456999875
No 357
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=7.9e-33 Score=304.31 Aligned_cols=202 Identities=26% Similarity=0.402 Sum_probs=178.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+..+++++.|.. .+. +++++|+.|++||+.++.|+|||||||++++|.|..++. +|++.++|.+.
T Consensus 564 ~~~~~~L~k~y~~-----------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t--~G~a~i~g~~i 629 (885)
T KOG0059|consen 564 ALVLNNLSKVYGG-----------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT--SGEALIKGHDI 629 (885)
T ss_pred eEEEcceeeeecc-----------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC--cceEEEecCcc
Confidence 4677888876632 112 899999999999999999999999999999999988874 59999999875
Q ss_pred ch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.+|||||.|.+.+.+|.||.+.+.+++++- ...+-.+.+++.++.++|.+..++.++ .+||
T Consensus 630 ~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~---~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySg 701 (885)
T KOG0059|consen 630 TVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGL---PRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSG 701 (885)
T ss_pred ccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCC---ChhHHHHHHHHHHHHcCChhhhccchh-----hCCC
Confidence 42 23678899999999999999999999999998863 334455668999999999999999875 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
|+|+|+++|.||+.+|++++|||||+|+||.+++.+.+++++++++|+.||+|||..+ |...+|||+-
T Consensus 702 G~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~a 769 (885)
T KOG0059|consen 702 GNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTA 769 (885)
T ss_pred cchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999988889999999987 7888999874
No 358
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.7e-32 Score=249.08 Aligned_cols=207 Identities=22% Similarity=0.275 Sum_probs=169.2
Q ss_pred EEEEeceeEEeecccc--------ccccc--c-ccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce
Q 015591 178 TVAFQDLKYYIDTPLE--------MRERG--F-TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSM 246 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~--------~~~~~--~-~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~ 246 (404)
.++++||+..|+...+ +.+.. + .....++|+||||++++||.++|+|+||||||||||+|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 3667777776654421 11111 1 234578999999999999999999999999999999999998875
Q ss_pred eeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 247 EGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 247 ~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
+|+|.++|.-...- .-. -.+.|.+|.+||+.+-..+.. ...++.++.++++++..+|.+..|.++
T Consensus 81 ~G~v~v~G~v~~li--~lg-------~Gf~pelTGreNi~l~~~~~G---~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKVAPLI--ELG-------AGFDPELTGRENIYLRGLILG---LTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceEehhh--hcc-------cCCCcccchHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 59999999642111 111 223577899999999776543 456677788999999999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+.+|-||+-||++|.|...+|+|||+||-.+.-|+.-+++=.+.++++.++++|||++||+++ .+-+.||+++.+
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l 220 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWL 220 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEE
Confidence 479999999999999999999999999999999999999999999999778899999999997 699999998753
No 359
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=5.8e-32 Score=279.99 Aligned_cols=192 Identities=27% Similarity=0.350 Sum_probs=152.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.| +.+.+|+|+|+++.+|+.+||||+||||||||||+|+|...+. +|+|...+.
T Consensus 3 ~i~~~~ls~~~-------------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~--~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAY-------------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD--SGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEee-------------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC--CCeEeecCC--
Confidence 47788888866 4578999999999999999999999999999999999988764 599987542
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhc--Ccc-------------------------CChhhHHHHHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL--APE-------------------------INSKTKAEFVNEVL 310 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~--~~~-------------------------~~~~~~~~~~~~~l 310 (404)
-.++|+.|+....+..||.+.+.-+..-.. ..+ ...-..+.++..++
T Consensus 66 ------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 66 ------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred ------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 257999999888888899998876532100 000 00001135667888
Q ss_pred HHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 311 ~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
..+++.+. ++.++ +||||||.|++||++|+.+|++|+|||||++||..+..-+-+.|++. .| |+|+||||-
T Consensus 140 ~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR 210 (530)
T COG0488 140 LGLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDR 210 (530)
T ss_pred hcCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCH
Confidence 88888776 66654 79999999999999999999999999999999999999999998864 47 999999997
Q ss_pred CHHHHHhccccc
Q 015591 391 SIDIFEAFDEVK 402 (404)
Q Consensus 391 ~~~i~~~fd~~l 402 (404)
.. +-+.|++++
T Consensus 211 ~F-Ld~V~t~I~ 221 (530)
T COG0488 211 YF-LDNVATHIL 221 (530)
T ss_pred HH-HHHHhhheE
Confidence 53 555666654
No 360
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.98 E-value=1.9e-32 Score=236.40 Aligned_cols=134 Identities=35% Similarity=0.573 Sum_probs=117.6
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCCHHH
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
|+|||+++++|++++|+|+||||||||+++|+|...+ .+|+|.++|.++.. ...++.++|++|++.+++.+|++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999998776 46999999988654 456788999999988899999999
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
| ...+.++++++.+++.+..+..++.+. ..||+|||||++|||||+++|++|||||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 123457888999998887788776553 5799999999999999999999999999996
No 361
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=1.4e-31 Score=296.91 Aligned_cols=208 Identities=23% Similarity=0.256 Sum_probs=169.0
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
...|+|+|++.+|.+ +...||+||||+|+|||.+||||..|||||||+++|-++..+ .+|+|.|||.
T Consensus 1136 ~G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDGV 1202 (1381)
T ss_pred CCeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcCe
Confidence 457999999998854 346799999999999999999999999999999999998776 4699999999
Q ss_pred cCch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 256 PKVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 256 ~~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
++.. ..+|++++.+||++.+ +..|+|.||.=... ..+.++.++-++...++.++ .+++..|..+.+.|. ++|
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvL-FsGTvR~NLDPf~e-~sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~egG~-N~S 1277 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVL-FSGTVRFNLDPFDE-YSDDEIWEALERCQLKDVVS--SLPGGLDSEVSEGGE-NFS 1277 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCce-ecCccccccCcccc-cCHHHHHHHHHHhChHHHHh--hCCcCCCceecCCCc-cCC
Confidence 8643 5789999999997775 56799999963221 11222333333444455555 455567888887654 699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||||.+++||||+++++||+|||+|+++|+++-..|++.|++-- .++|||.|+|+++. .--+|+||++
T Consensus 1278 vGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T--Vmd~DrVlVl 1346 (1381)
T KOG0054|consen 1278 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT--VMDSDRVLVL 1346 (1381)
T ss_pred hHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch--hhhcCeEEEe
Confidence 999999999999999999999999999999999999999999854 58999999999984 3358999874
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=1.7e-31 Score=307.67 Aligned_cols=183 Identities=26% Similarity=0.337 Sum_probs=138.9
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
+++.+|+|+|+++++|++++|+|||||||||||++|+|+.++. +|+|.++ +.++||+|++.+ ++.|+
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~--~G~i~~~----------~~i~yv~Q~~~l-~~~Tv 737 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS--EGRVWAE----------RSIAYVPQQAWI-MNATV 737 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEEC----------CeEEEEeCCCcc-CCCcH
Confidence 4467999999999999999999999999999999999988764 5999763 468999998765 46799
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
+||+.|+..... .......+...+++.++.+ .+..++.+++.+ ..||||||||++|||||+.+|+++||||||++|
T Consensus 738 ~enI~~~~~~~~-~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~~g-~~LSGGQkqRvaLARAl~~~p~illLDEP~saL 813 (1560)
T PTZ00243 738 RGNILFFDEEDA-ARLADAVRVSQLEADLAQL--GGGLETEIGEKG-VNLSGGQKARVSLARAVYANRDVYLLDDPLSAL 813 (1560)
T ss_pred HHHHHcCChhhH-HHHHHHHHHhhhHHHHHHh--hccchHHhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 999998532100 0000011111233334432 233455667664 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 362 DARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 362 D~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+.++..+++.+.....+|+|+|++||+++ ..+.+|+++.
T Consensus 814 D~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~ 853 (1560)
T PTZ00243 814 DAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVA 853 (1560)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEE
Confidence 999999888754322235899999999986 3477999875
No 363
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=3.5e-32 Score=295.76 Aligned_cols=202 Identities=35% Similarity=0.560 Sum_probs=179.0
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
..++|+|+|+-++||+++.++||.||||||||+.|+|..+.. ...|+|.+||++.+....++.++|+.|+|.|+|.+||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999964322 1258999999987654447889999999999999999
Q ss_pred HHHHHHHhhhhcCc----cCChhhHHH-HHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 015591 282 EESVIFSAWLRLAP----EINSKTKAE-FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356 (404)
Q Consensus 282 ~e~l~~~~~~~~~~----~~~~~~~~~-~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDE 356 (404)
+|.|.|+++++.+. +..+.++.+ ..+.+++.+||++++|+.+|....++.||||||||+||-+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 99999999987762 233333322 6789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|.|||+.++.++++.|+++++. +.|.+++.|||+.+++++||.++++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL 335 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILL 335 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeee
Confidence 99999999999999999999864 8999999999999999999999864
No 364
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.8e-31 Score=232.75 Aligned_cols=208 Identities=22% Similarity=0.275 Sum_probs=162.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc--
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-- 256 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~-- 256 (404)
+.++|+++++..-. + ..-..++++|+||+++.|||++|-||||+||||||++|-|.+.++ +|+|++....
T Consensus 5 l~v~~~~KtFtlH~--q----~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d--~G~I~v~H~g~~ 76 (235)
T COG4778 5 LNVSNVSKTFTLHQ--Q----GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD--EGQILVRHEGEW 76 (235)
T ss_pred eeeecchhheEeee--c----CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC--CceEEEEeCcch
Confidence 66777766553210 0 011357999999999999999999999999999999999988775 5999986432
Q ss_pred Cc-----h----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 257 KV-----Q----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 257 ~~-----~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
++ . ...++.+|||.|.-...|..+..|-+.-+...+ ........+++.+++.++++++..=.+ +
T Consensus 77 vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~L---a- 149 (235)
T COG4778 77 VDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSL---A- 149 (235)
T ss_pred hhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcC---C-
Confidence 11 1 223567899999877788888777776655433 344555667788999999887533222 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+...||||+||+.|||.++.+-+||+|||||+.||..++..++++|++-+.+|..+|=|-||-+ --...+||++
T Consensus 150 PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee-vre~vadR~~ 223 (235)
T COG4778 150 PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE-VREAVADRLL 223 (235)
T ss_pred CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH-HHHHHhhhee
Confidence 3579999999999999999999999999999999999999999999998878999999999964 3455688876
No 365
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.1e-30 Score=289.77 Aligned_cols=192 Identities=22% Similarity=0.369 Sum_probs=157.3
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|.+++.+.. +..+.|+||||+|++|+.+||+|+-|||||+||.+|.|..+. .+|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~~----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~--~sG~v~v~gs- 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK--LSGSVAVNGS- 583 (1381)
T ss_pred ceEEEeeeeEecCCC----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc--ccceEEEcCe-
Confidence 358888888875431 234489999999999999999999999999999999997764 5699999984
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC-------CCCccccccCCCCC
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-------DGIKDSLVGIPGVN 329 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~vg~~~~~ 329 (404)
++||+|++.. .+.||||||.|+..+ . +++.+++++.+.| ++...|.+|+.|.
T Consensus 584 ---------iaYv~Q~pWI-~ngTvreNILFG~~~-------d---~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi- 642 (1381)
T KOG0054|consen 584 ---------VAYVPQQPWI-QNGTVRENILFGSPY-------D---EERYDKVIKACALKKDLEILPFGDLTEIGERGI- 642 (1381)
T ss_pred ---------EEEeccccHh-hCCcHHHhhhcCccc-------c---HHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-
Confidence 7999998775 567999999997532 1 2334555555544 3566788999988
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+||||||||+++|||+.++++|++||.|.|++|++....|.+..-+..-+++|+|++|||. +..+.+|.++++
T Consensus 643 nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl 715 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVL 715 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEe
Confidence 4999999999999999999999999999999999999998865544334689999999986 579999998863
No 366
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.3e-31 Score=288.08 Aligned_cols=204 Identities=17% Similarity=0.176 Sum_probs=140.7
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceeeEEEECCc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT-GSMEGEIKIGGY 255 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~-~~~~G~I~i~G~ 255 (404)
..|.++|++++|. ++.+|+|+||+|++|+++||+|+|||||||||++|+|+... -+.+|+|.+.++
T Consensus 176 ~~I~i~nls~~y~-------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 176 KDIHMENFSISVG-------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred eeEEEceEEEEeC-------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 4589999999773 35699999999999999999999999999999999996311 123578865433
Q ss_pred c-----Cch------------hhhcceeEEeecCCCCCCCCCHHHHHHHHhh---------------hhcCccCChhhHH
Q 015591 256 P-----KVQ------------ETFARVSGYCEQTDIHSPQITVEESVIFSAW---------------LRLAPEINSKTKA 303 (404)
Q Consensus 256 ~-----~~~------------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~---------------~~~~~~~~~~~~~ 303 (404)
. ... ...++.+++++|.+..... ++.++...... ...-.........
T Consensus 243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (718)
T PLN03073 243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAE 321 (718)
T ss_pred cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHH
Confidence 2 110 0012234566654322111 11111100000 0000000011223
Q ss_pred HHHHHHHHHcCCC-CCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe
Q 015591 304 EFVNEVLETIELD-GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRT 382 (404)
Q Consensus 304 ~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~t 382 (404)
+++.+++..+++. +..++.+ ..||||||||++||++|+.+|++|||||||++||+.++..+.+.|+++ +.|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t 393 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT 393 (718)
T ss_pred HHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence 4567788888885 3345543 479999999999999999999999999999999999999999999875 689
Q ss_pred EEEEecCCCHHHHHhcccccc
Q 015591 383 IVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 383 ii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++||+.. .+.+.||+++.
T Consensus 394 viivsHd~~-~l~~~~d~i~~ 413 (718)
T PLN03073 394 FIVVSHARE-FLNTVVTDILH 413 (718)
T ss_pred EEEEECCHH-HHHHhCCEEEE
Confidence 999999986 57788999875
No 367
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.2e-30 Score=230.03 Aligned_cols=212 Identities=21% Similarity=0.297 Sum_probs=169.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.+...... +......+++.|||+++.|+.+|++|.||||||||.|+|+|...|. +|+|++||+++.
T Consensus 5 LeV~nLsKtF~~~~~l----f~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT--sG~il~n~~~L~ 78 (267)
T COG4167 5 LEVRNLSKTFRYRTGL----FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGEILINDHPLH 78 (267)
T ss_pred hhhhhhhhhhhhhhhh----hhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC--CceEEECCcccc
Confidence 5566776654332111 1223346899999999999999999999999999999999998874 599999999864
Q ss_pred hh---hhcceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCC
Q 015591 259 QE---TFARVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~~---~~~~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LS 332 (404)
.. ...+.+-+++|++. +.|.+.+..-+..+. +...+.....+.+++.+-++.+||- +.++.. ++.||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~-----~~~la 151 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-----PHMLA 151 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccccccc-----hhhcC
Confidence 32 23467889999864 456677777666654 4445566677888899999999985 444443 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||||||++||||+.+|+|+|.||+.++||..-+.++.+++.+|.++ |.+-|.++.++- -+-++.|++++.
T Consensus 152 ~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM 223 (267)
T COG4167 152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVM 223 (267)
T ss_pred chhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEE
Confidence 99999999999999999999999999999999999999999999865 999999999987 588899998863
No 368
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.2e-31 Score=229.83 Aligned_cols=198 Identities=26% Similarity=0.388 Sum_probs=144.7
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc---
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY--- 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~--- 255 (404)
++++++++.|. ...-.+||||.+.|||+.+|+|+|||||||||+||+++..|+ .|+|.+.-.
T Consensus 7 L~V~~lsk~Yg-------------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~--~G~v~Y~~r~~~ 71 (258)
T COG4107 7 LSVSGLSKLYG-------------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDGQ 71 (258)
T ss_pred eeehhhhhhhC-------------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC--CCeEEEEcCCCC
Confidence 77788887663 345788999999999999999999999999999999998875 599988543
Q ss_pred cC-----chhh----hcceeEEeecCCCCCCCC------CHHHHHHH-HhhhhcCccCChhhHHHHHHHHHHHcCCCCCc
Q 015591 256 PK-----VQET----FARVSGYCEQTDIHSPQI------TVEESVIF-SAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319 (404)
Q Consensus 256 ~~-----~~~~----~~~~~g~v~Q~~~~~~~~------Tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 319 (404)
+. .+.+ .|-.-|+|.|++.-=-.+ .+.|-+.- ++ | .. ....+.+.++++.++++..
T Consensus 72 ~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~--R---HY--G~iR~~a~~WL~~VEI~~~- 143 (258)
T COG4107 72 PRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA--R---HY--GNIRAEAQDWLEEVEIDLD- 143 (258)
T ss_pred chhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh--h---hh--hhHHHHHHHHHHhcccCcc-
Confidence 21 1111 123469999986422122 23333221 11 1 11 1224456788888887632
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhc
Q 015591 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 320 ~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~f 398 (404)
..-.. +..+|||++||+.|||.|+..|+++|+||||.|||..-+..++++++.|..+ |.+++++|||+.. .--+.
T Consensus 144 -RiDD~--PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla 219 (258)
T COG4107 144 -RIDDL--PRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLA 219 (258)
T ss_pred -cccCc--ccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhh
Confidence 22122 3579999999999999999999999999999999999999999999999865 9999999999852 23345
Q ss_pred ccccc
Q 015591 399 DEVKQ 403 (404)
Q Consensus 399 d~~l~ 403 (404)
|++++
T Consensus 220 ~rlmv 224 (258)
T COG4107 220 DRLMV 224 (258)
T ss_pred hccee
Confidence 66554
No 369
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=2.2e-30 Score=243.16 Aligned_cols=182 Identities=23% Similarity=0.302 Sum_probs=123.1
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHH-HHHhCCCCCCceeeEEEE------------CCccCc-hhhhc-ceeE
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLL-DVLAGRKTTGSMEGEIKI------------GGYPKV-QETFA-RVSG 267 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl-~~L~g~~~~~~~~G~I~i------------~G~~~~-~~~~~-~~~g 267 (404)
+.++|+||||++++||+++|+|+||||||||+ ..+.. .|++.+ ...... ....+ ....
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 45699999999999999999999999999995 44431 122111 000000 00111 1223
Q ss_pred EeecCCC--CCCCCCHHH---HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHHHHHHHH
Q 015591 268 YCEQTDI--HSPQITVEE---SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQRKRLTI 341 (404)
Q Consensus 268 ~v~Q~~~--~~~~~Tv~e---~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqRl~I 341 (404)
+..|++. ..+..++.. ...+...+. ......+. .+.++.+++.+ ..+... ..||||||||++|
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~l 148 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRL 148 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHH
Confidence 3333332 234445442 222211111 11111222 46788889875 355543 4799999999999
Q ss_pred HHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 342 AVELVANP--SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 342 AraL~~~p--~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|+.+| ++|||||||+|||+.++..+.+.|++++++|.|+|++||+++ ++ +.+|+++++
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l 211 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDI 211 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEe
Confidence 99999998 599999999999999999999999999877999999999986 34 689998753
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=9.7e-31 Score=240.54 Aligned_cols=163 Identities=19% Similarity=0.233 Sum_probs=126.3
Q ss_pred eeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-------ceeeEEEECCccCchhhhcceeEEeecCCCCCCCCC
Q 015591 208 YDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-------SMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 208 ~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-------~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~T 280 (404)
+++++++++| +++|+||||||||||+++|+|+..+. ...|++.++|.+......++.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999875332 12356777777643333457799999977654
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV----ANPSIIFMDE 356 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~----~~p~iLlLDE 356 (404)
|+. . ..++++++++. .+..++.+ ..||+|||||++||++++ .+|++++|||
T Consensus 89 ------~~~----~-------~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI----I-------SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE----E-------ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 210 0 02345566665 34445443 479999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||+..+..+.+.|+++++ +.|||++||+++ ..+.+|+++.
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~ 187 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYG 187 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEE
Confidence 9999999999999999999864 789999999986 3578999874
No 371
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=5.9e-29 Score=237.36 Aligned_cols=184 Identities=25% Similarity=0.331 Sum_probs=137.2
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh-----C---CC--CCC---------ceeeEEEECCccCch-----
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA-----G---RK--TTG---------SMEGEIKIGGYPKVQ----- 259 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~-----g---~~--~~~---------~~~G~I~i~G~~~~~----- 259 (404)
..-|+|||..|+.|++++|.|+||||||||++.+. . .. .++ ...--|.++..|+..
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998552 1 10 010 011236777765321
Q ss_pred --------hhhcc----------------eeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC
Q 015591 260 --------ETFAR----------------VSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 315 (404)
Q Consensus 260 --------~~~~~----------------~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 315 (404)
...|+ .+.|..+.......+|+.|++.|...+. +.+.+.++++.++|
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 00111 1334444444457899999999875432 12446778999999
Q ss_pred CC-CccccccCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 316 DG-IKDSLVGIPGVNGLSTEQRKRLTIAVELVAN---PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 316 ~~-~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~---p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.. ..+... ..||||||||+.|||+|+.+ |+++||||||+|||+..+..+.+.|+++.++|.|||+++|+++
T Consensus 159 ~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 344443 47999999999999999996 7999999999999999999999999999878999999999986
Q ss_pred HHHHHhcccccc
Q 015591 392 IDIFEAFDEVKQ 403 (404)
Q Consensus 392 ~~i~~~fd~~l~ 403 (404)
..+.+|+++.
T Consensus 234 --~i~~aD~ii~ 243 (261)
T cd03271 234 --VIKCADWIID 243 (261)
T ss_pred --HHHhCCEEEE
Confidence 3467999875
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=1.5e-28 Score=254.62 Aligned_cols=188 Identities=27% Similarity=0.353 Sum_probs=151.3
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
+..++++|+++.|+ +++.+++++||.+.+|+.+||+||||+|||||||+|+|...+. +|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~--~G~v~~g~~ 384 (530)
T COG0488 319 KLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL--SGTVKVGET 384 (530)
T ss_pred CeeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC--CceEEeCCc
Confidence 44689999998763 2267999999999999999999999999999999999976654 699987532
Q ss_pred cCchhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCH
Q 015591 256 PKVQETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLST 333 (404)
Q Consensus 256 ~~~~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSg 333 (404)
-.+||..|+. .+.+..|+.|++.-.. +.. ....+...+..+++.. ...+.+ ..|||
T Consensus 385 --------v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~----~e~~~r~~L~~f~F~~~~~~~~v-----~~LSG 442 (530)
T COG0488 385 --------VKIGYFDQHRDELDPDKTVLEELSEGF-----PDG----DEQEVRAYLGRFGFTGEDQEKPV-----GVLSG 442 (530)
T ss_pred --------eEEEEEEehhhhcCccCcHHHHHHhhC-----ccc----cHHHHHHHHHHcCCChHHHhCch-----hhcCH
Confidence 2579999975 3347779999886432 111 1456788899999864 334554 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||.|+.+|+.++.+|.+|||||||+.||..+...+.+.|.+. .-|||+||||... +-..+++++.
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~F-l~~va~~i~~ 508 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYF-LDRVATRIWL 508 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHH-HHhhcceEEE
Confidence 9999999999999999999999999999999999999998864 4699999999863 5666777654
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=5.8e-29 Score=235.47 Aligned_cols=184 Identities=15% Similarity=0.222 Sum_probs=126.3
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC----------------CCCCceee--------EEEECCcc-
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR----------------KTTGSMEG--------EIKIGGYP- 256 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~----------------~~~~~~~G--------~I~i~G~~- 256 (404)
+++.++++++ |++++|+||||||||||+++|++. ..++ +| +|.+++.+
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~--~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG--SGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC--CCCCCceEEEEEEEEcCCC
Confidence 3456888887 789999999999999999999832 2222 23 55555532
Q ss_pred ---C--chhhhcceeEEeecCCCCCC-CCCHHHHHHHHhhhhcCccCCh-hhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 257 ---K--VQETFARVSGYCEQTDIHSP-QITVEESVIFSAWLRLAPEINS-KTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 257 ---~--~~~~~~~~~g~v~Q~~~~~~-~~Tv~e~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
. .....++.+++++|...+++ ..|..|...+............ .... .++.+.+++.+..+.. +.
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~q---g~i~~l~~l~~~~~~~-----~~ 157 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQ---GKINSLTNMKQDEQQE-----MQ 157 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEc---CchHHhhhcccccccc-----cc
Confidence 1 11234567889888665555 3577666555443322111000 0001 1223333444333443 34
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVA----NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~----~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||+|||||++|||+|+. +|++++|||||+|||+.++..+++.|+++++ ++|+|+++|++ ++...+|+++.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~ 232 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYG 232 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEE
Confidence 799999999999999973 5899999999999999999999999999864 78899999985 57889999875
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=9e-28 Score=243.83 Aligned_cols=191 Identities=20% Similarity=0.400 Sum_probs=162.4
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch----hhhcceeEEeecC---CCCCCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----ETFARVSGYCEQT---DIHSPQ 278 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~g~v~Q~---~~~~~~ 278 (404)
.++|+||++++||+++|-|-=|||+|-|+++|.|..+. .+|+|.++|+++.. ...+..++||+.+ +-++..
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~--~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA--SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC--CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 58899999999999999999999999999999996554 36999999997532 3456789999975 457889
Q ss_pred CCHHHHHHHHhhhhcCc--cCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 015591 279 ITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 355 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLD 355 (404)
++|++|+.++...+... .++.+...+.+++.++.+++.- ..+..+ ..||||.+||+.|||.|..+|++||||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 99999999983323221 3455566678899999988853 334444 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||.|.|.-++.+|.++|++++++|++||++|-++. |+..+||||+++
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm 474 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVM 474 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEE
Confidence 999999999999999999999999999999999997 899999999874
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=2.2e-28 Score=233.11 Aligned_cols=177 Identities=15% Similarity=0.238 Sum_probs=131.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc-cCch-----hhhcceeEEeecCC---------CCCCCCCH
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY-PKVQ-----ETFARVSGYCEQTD---------IHSPQITV 281 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~-~~~~-----~~~~~~~g~v~Q~~---------~~~~~~Tv 281 (404)
..+++|+||||||||||+++|++...+. ..|+++..|. ++.. ......+++++|++ ...+.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 4499999999999999999999976542 2367777765 3211 11234788999974 23567889
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC--------------------CccccccCCCCCCCCHHHHHHHHH
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG--------------------IKDSLVGIPGVNGLSTEQRKRLTI 341 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--------------------~~~~~vg~~~~~~LSgGqrqRl~I 341 (404)
.+++......+... .......+.+.++++.+++.. ..+.. +..||+|||||++|
T Consensus 104 ~r~I~~~~~~~~~i-n~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~-----~~~lS~G~~qr~~l 177 (251)
T cd03273 104 TRQIVLGGTNKYLI-NGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKES-----LTELSGGQRSLVAL 177 (251)
T ss_pred EEEEEcCCceEEEE-CCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhccc-----ccccCHHHHHHHHH
Confidence 88886543221100 012223467888899988851 11222 35799999999999
Q ss_pred HHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 342 AVELV----ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 342 AraL~----~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|+ .+|++++|||||++||+.++..+.+.|+++. +|.|+|++||++ ++++.+|+++-
T Consensus 178 a~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~ 240 (251)
T cd03273 178 SLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFR 240 (251)
T ss_pred HHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEE
Confidence 99998 5789999999999999999999999999985 589999999994 68889999863
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=2.3e-29 Score=234.00 Aligned_cols=176 Identities=14% Similarity=0.177 Sum_probs=129.6
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
+++.+++++++ ++++|+||||||||||+++|.- ++|.+.. ...++.+++++|.....+.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~-~~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRAS-KMRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHH-HhhhhhHHHHhcCCCCCCCCce
Confidence 45679999987 8999999999999999999971 1232211 1112457888888777888888
Q ss_pred HHHHHHHhhhhcC-----ccCChhhHHH--HHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc----CCC
Q 015591 282 EESVIFSAWLRLA-----PEINSKTKAE--FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA----NPS 350 (404)
Q Consensus 282 ~e~l~~~~~~~~~-----~~~~~~~~~~--~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~----~p~ 350 (404)
++.+.+....... ..+....... ...++++.+++.+..++.+ ..||+|||||++||||++. +|+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 8877665432110 0011111000 1245566677777666654 3699999999999999974 579
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 351 IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 351 iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+++|||||+|||+.++..+.+.+++++ ++.|+|++||++ ++...+|+++.
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~--~~~~~~d~v~~ 201 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN--NMFELADRLVG 201 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH--HHHHhCCEEEE
Confidence 999999999999999999999999985 568899999995 67889999875
No 377
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.95 E-value=3.2e-27 Score=244.14 Aligned_cols=188 Identities=26% Similarity=0.348 Sum_probs=151.4
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|++..-+ .+...|++.++.+++||-+-|.||||||||||+|+|+|+.+.+. |+|..-.
T Consensus 391 ~~i~~~nl~l~~p------------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~--G~I~~P~-- 454 (604)
T COG4178 391 HGITLENLSLRTP------------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS--GRISMPA-- 454 (604)
T ss_pred ceeEEeeeeEECC------------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC--CceecCC--
Confidence 4699999997543 23579999999999999999999999999999999999998764 8875531
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccC-CCCCCCCHHH
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI-PGVNGLSTEQ 335 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~-~~~~~LSgGq 335 (404)
...+-|+||.+. +|..|.||.+.++.... . -.++.+.+++..++|.+..+.+-+. +..+.||+||
T Consensus 455 ------~~~~lflpQ~PY-~p~GtLre~l~YP~~~~---~----~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GE 520 (604)
T COG4178 455 ------DSALLFLPQRPY-LPQGTLREALCYPNAAP---D----FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGE 520 (604)
T ss_pred ------CCceEEecCCCC-CCCccHHHHHhCCCCCC---C----CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhH
Confidence 123579999776 56779999999864221 1 2345577888888888776655433 1234599999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHH
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIF 395 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~ 395 (404)
||||++||.|+++|++++|||.||+||+.++..+++.+++-. .+.|||-|.|++...-|
T Consensus 521 qQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl~~~ 579 (604)
T COG4178 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNF 579 (604)
T ss_pred HHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchhhHHH
Confidence 999999999999999999999999999999999999998743 48999999999875433
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=2.9e-27 Score=218.68 Aligned_cols=162 Identities=20% Similarity=0.220 Sum_probs=119.3
Q ss_pred eeeeeeCCcEEEEEcCCCCcHHHHHHHHh----CCCCCCceeeEEEECCccCchhhhcceeEEeecCC-----CCCCCCC
Q 015591 210 VTGSLRPGVLTALMGVSGAGKTTLLDVLA----GRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTD-----IHSPQIT 280 (404)
Q Consensus 210 vs~~i~~Ge~~alvG~sGaGKSTLl~~L~----g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~-----~~~~~~T 280 (404)
.++++.+| +++|+||||||||||+++|. |...++ .|.+..+...+.....+..+++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~--~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN--SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc--cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 34566778 99999999999999999994 766543 254441111122223456788999876 2234458
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH------HHHHHHHhcCCCEEEE
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR------LTIAVELVANPSIIFM 354 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR------l~IAraL~~~p~iLlL 354 (404)
+.||+.+.. . ..+++.+ +.. +..||+||||| ++|||+++.+|++++|
T Consensus 93 ~~~~~~~~~---------~----~~~~~~~---------~~~-----~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFCH---------Q----GESNWPL---------LDM-----RGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeeec---------h----HHHHHHH---------hcC-----ccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888886531 1 1122222 222 24699999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAA-IIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~-~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++||+..+. .+.+.|++++++ |.|||++||+++ ....+|+++.
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~ 194 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYR 194 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEE
Confidence 9999999999999 999999998766 899999999975 4567998874
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=1.6e-26 Score=215.00 Aligned_cols=175 Identities=18% Similarity=0.112 Sum_probs=114.9
Q ss_pred eeeeeeee-CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc-c-CchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 208 YDVTGSLR-PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY-P-KVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 208 ~~vs~~i~-~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~-~-~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
++++|... +|++++|+||||||||||+++|++... +...+....+.. . +........+++++|.+.... ++...
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-GKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-cCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 45666644 589999999999999999999996321 112233332211 1 111233456888988653211 11111
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc----------CCCEEEE
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA----------NPSIIFM 354 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~----------~p~iLlL 354 (404)
. ..+..+..+.+ .++..++.+..+.. +..||+|||||++|||+|+. +|+++||
T Consensus 95 ~----------gl~~~~~~~~~--~l~~g~l~~~l~~~-----~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 95 R----------GLDYDQFTRIV--LLPQGEFDRFLARP-----VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred c----------CCCHHHHHHhh--hhhhcchHHHhcCC-----ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 1 11111111100 12222333333443 34799999999999999985 5789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++||+.+...+.+.|++++++|.|+|++||+++ .+...+|++++
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~ 205 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEV 205 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEE
Confidence 9999999999999999999999867999999999986 46666777654
No 380
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=3.1e-27 Score=207.15 Aligned_cols=180 Identities=27% Similarity=0.415 Sum_probs=149.7
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCCHHH
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
|-.+|.++..||++-+||||||||||||-.++|+.+ .+|+|.++|.++.. .++.|..+|..|+..-.+.|.|..
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~---~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCC---CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 678899999999999999999999999999999865 35999999998643 356677789999887778899999
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc-----CC--CEEEEeC
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA-----NP--SIIFMDE 356 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~-----~p--~iLlLDE 356 (404)
.+... ++ .++....++++...+++.+...+.+ +.|||||-|||-+|...+. || ++|++||
T Consensus 92 YL~L~----qP----~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDE 158 (248)
T COG4138 92 YLTLH----QP----DKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE 158 (248)
T ss_pred hhhhc----Cc----hHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecC
Confidence 88763 22 2455667788888888887665553 5799999999999977653 44 4899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|.++||...+..+.+.|.+++..|.+|||+.||++ ......|++.+
T Consensus 159 P~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wL 204 (248)
T COG4138 159 PMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWL 204 (248)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHH
Confidence 99999999999999999999999999999999998 46666776654
No 381
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.9e-26 Score=223.87 Aligned_cols=195 Identities=21% Similarity=0.277 Sum_probs=150.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
+++++|+.|.|... .--+..||+++++||++-|+|.||||||||+++|.|++.|+ +|+|++||.|+
T Consensus 322 ~lelrnvrfay~~~------------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq--sG~I~ldg~pV 387 (546)
T COG4615 322 TLELRNVRFAYQDN------------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKPV 387 (546)
T ss_pred ceeeeeeeeccCcc------------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC--CCceeECCccC
Confidence 59999999988531 13478999999999999999999999999999999999885 59999999987
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
+. +++|+..+-|+.+..+++.+ + +++.. ...+.++..++++++.+.-.-.-|.-..-.||.|
T Consensus 388 ~~e~ledYR~LfSavFsDyhLF~~l-l-----------~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStG 452 (546)
T COG4615 388 SAEQLEDYRKLFSAVFSDYHLFDQL-L-----------GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTG 452 (546)
T ss_pred CCCCHHHHHHHHHHHhhhHhhhHhh-h-----------CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccc
Confidence 54 45677777777744444332 1 11111 1234567777777776543222222223469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN-VVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~-l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||+++-.||+-+.+|+++||=-+-.||.-++.+.+.+-- +++.|+||+.||||-. -|...||++.
T Consensus 453 QkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~ 520 (546)
T COG4615 453 QKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLE 520 (546)
T ss_pred hHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHH
Confidence 99999999999999999999999999999999999876655 4567999999999964 6888898764
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=7.6e-25 Score=249.19 Aligned_cols=122 Identities=21% Similarity=0.319 Sum_probs=96.2
Q ss_pred CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHh---cCCC
Q 015591 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELV---ANPS 350 (404)
Q Consensus 275 ~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~---~~p~ 350 (404)
.+...||.|+|.+............++..+.+ +.++.++|.+. .+... ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 34567999999987653321111122333445 47788898765 45553 479999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 351 IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 351 iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||||+|||+.++..+++.|++++++|.|||+++|+++ .+ ..+|+++.+
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L 884 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLEL 884 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEE
Confidence 99999999999999999999999999888999999999997 45 899998753
No 383
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.91 E-value=4.3e-24 Score=210.82 Aligned_cols=172 Identities=23% Similarity=0.329 Sum_probs=137.1
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHH
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVI 286 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~ 286 (404)
|+-=.+++..||+++++||||-||||+.++|+|..+|+ +|. .. .-.++|-||--.-....||++-+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 44445677788999999999999999999999998875 465 11 124678888544456789999876
Q ss_pred HHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 015591 287 FSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366 (404)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~ 366 (404)
-....+.. ..-+..++++-|.|+++.+..+. +|||||.|||+||.+|.+++++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFG-------SSYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcc-------cchhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 54332211 11234678888899998888864 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 367 AIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 367 ~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..+.+.|++..++ ++|.+++.||.-. +-=+.|++++|
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF 529 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVF 529 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEE
Confidence 9999999999864 8999999999863 34467888876
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=1.2e-24 Score=218.75 Aligned_cols=189 Identities=21% Similarity=0.245 Sum_probs=141.6
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..+.++|++|.|+. +..++++++|-+..++-+|+|||||||||||||++.|...|. .|.|.-.-+.
T Consensus 388 pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~--~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT--IGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc--cccccccccc
Confidence 35778888886632 236899999999999999999999999999999999988764 5887654332
Q ss_pred CchhhhcceeEEeecC--CCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCH
Q 015591 257 KVQETFARVSGYCEQT--DIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~--~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSg 333 (404)
. +++..|. +.+.-..++.|++.=.. ......+.+..++.++||.. ..+.++ ++||+
T Consensus 454 ~--------~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~LS~ 512 (614)
T KOG0927|consen 454 K--------LPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPM-----SQLSD 512 (614)
T ss_pred c--------chhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccch-----hhccc
Confidence 1 2233332 23333456667664221 11234567889999999984 444443 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+||.+|+.++..|.+|+|||||+|||..+...+-++|.+. .-+||++|||.. -|-+..+++.+|
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c 579 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVC 579 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhh
Confidence 9999999999999999999999999999999998888888753 468999999976 366666665543
No 385
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=1.9e-23 Score=208.88 Aligned_cols=209 Identities=19% Similarity=0.355 Sum_probs=171.3
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
...++++||+..-. .....+++|||+++.||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|+
T Consensus 255 ~~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~--~G~I~l~G~ 320 (501)
T COG3845 255 EVVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA--SGRILLNGK 320 (501)
T ss_pred CeEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC--CceEEECCE
Confidence 34588888886421 1245799999999999999999999999999999999988664 499999999
Q ss_pred cC----chh-hhcceeEEeecCC---CCCCCCCHHHHHHHHhhhhc----CccCChhhHHHHHHHHHHHcCCCC-Ccccc
Q 015591 256 PK----VQE-TFARVSGYCEQTD---IHSPQITVEESVIFSAWLRL----APEINSKTKAEFVNEVLETIELDG-IKDSL 322 (404)
Q Consensus 256 ~~----~~~-~~~~~~g~v~Q~~---~~~~~~Tv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 322 (404)
+. ... ..+..++|||.+. .+.+.+|+.||+.+....+. ..-+......+.+.++++.++... ..+..
T Consensus 321 ~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~ 400 (501)
T COG3845 321 DVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP 400 (501)
T ss_pred eccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc
Confidence 85 222 2345789999864 35688999999998754321 112344556778899999988863 22333
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 323 vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
...||||++||+-+||+|..+|++|++.+||-|||..+.+.|.+.|.+.+++|+.|++++-+++ |+++++|++.
T Consensus 401 -----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIa 474 (501)
T COG3845 401 -----ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIA 474 (501)
T ss_pred -----hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheee
Confidence 3479999999999999999999999999999999999999999999999989999999999997 8999999987
Q ss_pred cC
Q 015591 403 QF 404 (404)
Q Consensus 403 ~~ 404 (404)
++
T Consensus 475 Vi 476 (501)
T COG3845 475 VI 476 (501)
T ss_pred ee
Confidence 64
No 386
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=5.6e-24 Score=195.82 Aligned_cols=164 Identities=16% Similarity=0.134 Sum_probs=113.4
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE--ECCcc----CchhhhcceeEEeecCCCCCCCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK--IGGYP----KVQETFARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~--i~G~~----~~~~~~~~~~g~v~Q~~~~~~~~ 279 (404)
-++++++++.+| +++|+||||||||||+..|.-... |+.. ..|.. +........+.+++|.....+
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-- 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-- 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC--
Confidence 346788888888 889999999999999999874221 1111 11211 001112345677777544333
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHH----hcCCCEEEEe
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVEL----VANPSIIFMD 355 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL----~~~p~iLlLD 355 (404)
| .. .....+.++++++. .+..++.+ +.||+|||||++||+++ +.+|++++||
T Consensus 83 ----~-----------~~-~~~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlD 138 (198)
T cd03276 83 ----N-----------PL-CVLSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLD 138 (198)
T ss_pred ----C-----------cC-CHHHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEec
Confidence 1 00 11123456666664 44445543 47999999999999999 5899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC---CCeEEEEecCCCHHHHHhcccccc
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVDT---GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~~---g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||+|||+.++..+.+.|+++.++ ++|||+++|+++ ++.. +|++-+
T Consensus 139 EP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~-~d~v~~ 187 (198)
T cd03276 139 EFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLAS-SDDVKV 187 (198)
T ss_pred CcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cccc-ccceeE
Confidence 999999999999999999997643 368999999997 4544 587754
No 387
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.91 E-value=2.7e-23 Score=227.58 Aligned_cols=109 Identities=27% Similarity=0.347 Sum_probs=89.5
Q ss_pred CCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEE
Q 015591 279 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANP---SIIFM 354 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p---~iLlL 354 (404)
+|+.|++.|...+. . .....+.++.++|... .+... ..||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78888888864321 1 1224577888898752 44443 479999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||+|||+..+..+++.|+++.++|.|||+++|+++ .+ ..+|+++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~ 904 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIID 904 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEE
Confidence 9999999999999999999999878999999999986 34 67999875
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=2.7e-24 Score=204.53 Aligned_cols=179 Identities=13% Similarity=0.169 Sum_probs=114.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc-C-chh------hhcceeEEee--cCCCC-CCCCCHHH
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-K-VQE------TFARVSGYCE--QTDIH-SPQITVEE 283 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~-~-~~~------~~~~~~g~v~--Q~~~~-~~~~Tv~e 283 (404)
.++ +++|+||||||||||+++|++...+. .|++..++.. . ... .....+..++ |++.. ....++++
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~--~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~ 97 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEK--SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITG 97 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCC--cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEEC
Confidence 344 99999999999999999999865432 3555443321 0 000 0112233333 32111 11111111
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcccc----------ccC-C------CCCCCCHHHHHHHHHHHHHh
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL----------VGI-P------GVNGLSTEQRKRLTIAVELV 346 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~----------vg~-~------~~~~LSgGqrqRl~IAraL~ 346 (404)
... ..+... .....+.++++++.+++....... ... | .+..||+|||||++||++++
T Consensus 98 ~~~---~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~ 171 (247)
T cd03275 98 GSS---SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFA 171 (247)
T ss_pred Cce---EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHH
Confidence 100 001010 111234456888888885321111 000 1 12579999999999999998
Q ss_pred cC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 347 AN----PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 347 ~~----p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.+ |+++||||||+|||+..+..+.+.|++++++|.|+|++||++ ++.+.+|+++.+
T Consensus 172 ~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~ 231 (247)
T cd03275 172 IHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGV 231 (247)
T ss_pred HhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEE
Confidence 64 899999999999999999999999999986699999999995 567899998753
No 389
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.91 E-value=1.6e-23 Score=211.88 Aligned_cols=196 Identities=20% Similarity=0.250 Sum_probs=150.0
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..+++++|+..-+. .+..+.+|+||+|++|+-+.|.||||||||+|+++|+|+.+.. +|.+.--...
T Consensus 432 n~i~~e~v~l~tPt-----------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~--~G~l~k~~~~ 498 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT-----------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST--GGKLTKPTDG 498 (659)
T ss_pred ceEEeeeeeecCCC-----------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC--CCeEEecccC
Confidence 46999999986432 1345889999999999999999999999999999999998753 5888654322
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC------CCCC
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP------GVNG 330 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~------~~~~ 330 (404)
.. +.+-|+||.|. ++-.|.||.+.|+..--.. ..+....+.+.+.++.++|.++.+..-|.. ....
T Consensus 499 ~~-----~~lfflPQrPY-mt~GTLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dv 570 (659)
T KOG0060|consen 499 GP-----KDLFFLPQRPY-MTLGTLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDV 570 (659)
T ss_pred CC-----CceEEecCCCC-ccccchhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhh
Confidence 11 34679999776 4566999999997322111 112233456777788777776554433321 2345
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHH
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFE 396 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~ 396 (404)
||+||+||++.||-+.++|++-||||.||++|...+..+.+.+++ .|.|.|-|.|+.+..-|+
T Consensus 571 LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL~kfH 633 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSLWKFH 633 (659)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHHHhhh
Confidence 999999999999999999999999999999999999999988874 599999999999854443
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.89 E-value=5.8e-23 Score=206.57 Aligned_cols=202 Identities=22% Similarity=0.270 Sum_probs=127.5
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
...+.+.++++.+ .+..+++|++|++.+|+-++|+|+|||||||+|++|+|...|-+.+=.++.-.+
T Consensus 73 s~dvk~~sls~s~-------------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~ 139 (614)
T KOG0927|consen 73 SRDVKIESLSLSF-------------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR 139 (614)
T ss_pred cccceeeeeeecc-------------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcc
Confidence 3457778877755 457899999999999999999999999999999999998776553333333222
Q ss_pred cCchh---hhcce----------eEEeecCCCCC-CCCCHHHHHHH-HhhhhcCccCChhhHHHHHHHHHHHcCCC-CCc
Q 015591 256 PKVQE---TFARV----------SGYCEQTDIHS-PQITVEESVIF-SAWLRLAPEINSKTKAEFVNEVLETIELD-GIK 319 (404)
Q Consensus 256 ~~~~~---~~~~~----------~g~v~Q~~~~~-~~~Tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~ 319 (404)
+.... ..+.. ..|...+-... +. .+.-.+ ....|. .+........++-+++..++.. +..
T Consensus 140 e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~---~~~~~l~~~~~r~-~~~d~~~~~~k~~~il~glgf~~~m~ 215 (614)
T KOG0927|consen 140 EIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDD---KEKDELDELYERL-DEMDNDTFEAKAAKILHGLGFLSEMQ 215 (614)
T ss_pred cCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc---hhhhHHHHHHHHH-HhhCchhHHHHHHHHHHhcCCCHhHH
Confidence 21110 00000 00000000000 00 000000 000111 1112222233445555555543 445
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcc
Q 015591 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFD 399 (404)
Q Consensus 320 ~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd 399 (404)
++.+ .+||||||.|+++||+|..+|++|+|||||++||..+..-+-+.|.+.. ++ ++++++|.-. -+-..|.
T Consensus 216 ~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d-~~-~lVi~sh~QD-fln~vCT 287 (614)
T KOG0927|consen 216 DKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD-RI-ILVIVSHSQD-FLNGVCT 287 (614)
T ss_pred HHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc-Cc-eEEEEecchh-hhhhHhh
Confidence 5553 5799999999999999999999999999999999999998888887643 22 8999999765 3555666
Q ss_pred ccc
Q 015591 400 EVK 402 (404)
Q Consensus 400 ~~l 402 (404)
+|+
T Consensus 288 ~Ii 290 (614)
T KOG0927|consen 288 NII 290 (614)
T ss_pred hhh
Confidence 654
No 391
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=3.8e-22 Score=218.22 Aligned_cols=110 Identities=26% Similarity=0.334 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhc---CCCEEE
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVA---NPSIIF 353 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~---~p~iLl 353 (404)
.+||.|++.|...+. . .....++++.++|... .++.+ ..|||||+||+.||++|+. +|+++|
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 367777777754321 1 1134577888888642 34443 4799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 354 MDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 354 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||+|||+..+..+++.|+++.++|.|||+++|++. .+ ..+|+++.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~ 902 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIID 902 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEE
Confidence 99999999999999999999999878999999999996 34 67999875
No 392
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.88 E-value=6.8e-23 Score=184.70 Aligned_cols=198 Identities=18% Similarity=0.242 Sum_probs=148.0
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECCccC---chhhhc----ceeEEeecC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG--SMEGEIKIGGYPK---VQETFA----RVSGYCEQT 272 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G~~~---~~~~~~----~~~g~v~Q~ 272 (404)
+...++++||+++..||+-+|+|+||||||-..|+|.|..+.. .+.-..++++.++ ..+..| +.+++++|+
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 4567999999999999999999999999999999999964321 0112345555542 223333 346788997
Q ss_pred CC--CCCCCCHHHHHHHHhhhhcCcc---CChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc
Q 015591 273 DI--HSPQITVEESVIFSAWLRLAPE---INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA 347 (404)
Q Consensus 273 ~~--~~~~~Tv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~ 347 (404)
+. +.|+-+|...+.-......... ..-.-+++++-+++..+|+.+..|-.-.+| .+|.-||-|+|.||.|++.
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP--~ElTeGE~QKVMIA~A~An 175 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP--YELTEGECQKVMIAIALAN 175 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc--chhccCcceeeeeehhhcc
Confidence 64 3455555544432211111000 011124566778999999998888776665 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+|++||.||||+++|+.++.+|.++|.++.+ +|.||++++||+. .+-+-+|++=
T Consensus 176 qPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~ 230 (330)
T COG4170 176 QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKIN 230 (330)
T ss_pred CCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheE
Confidence 9999999999999999999999999999975 4899999999996 5888888763
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.2e-22 Score=203.21 Aligned_cols=176 Identities=22% Similarity=0.236 Sum_probs=119.5
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
.+|+..+.+..| +.+.+|++-++++..|..++|+|+||+|||||||+|+. |.|..-.
T Consensus 79 ~Di~~~~fdLa~-------------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v~~f~-- 135 (582)
T KOG0062|consen 79 KDIHIDNFDLAY-------------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQVSGFH-- 135 (582)
T ss_pred cceeeeeeeeee-------------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCcCccC--
Confidence 356666666554 56789999999999999999999999999999999985 3332222
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChh-hHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHH
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK-TKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTE 334 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgG 334 (404)
.. +..+ ..+++-....+...+.+..+... ..++... +..+...+++.-+|+.+- .... .++||||
T Consensus 136 ve-qE~~--g~~t~~~~~~l~~D~~~~dfl~~-----e~~l~~~~~l~ei~~~~L~glGFt~emq~~p-----t~slSGG 202 (582)
T KOG0062|consen 136 VE-QEVR--GDDTEALQSVLESDTERLDFLAE-----EKELLAGLTLEEIYDKILAGLGFTPEMQLQP-----TKSLSGG 202 (582)
T ss_pred ch-hhee--ccchHHHhhhhhccHHHHHHHHh-----hhhhhccchHHHHHHHHHHhCCCCHHHHhcc-----ccccCcc
Confidence 11 1111 11222211112222333333221 1111111 233344447888888643 2232 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.|-|+++||||..+|+||+|||||+.||..+..-+-+.|+.. +.|+|+|+||-+
T Consensus 203 WrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~ 256 (582)
T KOG0062|consen 203 WRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRN 256 (582)
T ss_pred hhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHH
Confidence 999999999999999999999999999999988888888753 489999999965
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=7.2e-22 Score=193.97 Aligned_cols=176 Identities=20% Similarity=0.309 Sum_probs=136.6
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..+-+.||+|.|+ +.++++++++|-|.--..+|||||||.||||||++|.|.+.|. .|+.+-|
T Consensus 585 PvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~--~GE~RKn--- 647 (807)
T KOG0066|consen 585 PVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN--DGELRKN--- 647 (807)
T ss_pred CeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC--cchhhcc---
Confidence 3466777777653 4578999999999999999999999999999999999988774 4765432
Q ss_pred CchhhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 257 KVQETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
.+-++|+..|+. .+-..-|.-|.|.-... ++ .+.+...+-.+||...++++- ...||||
T Consensus 648 -----hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lp----yq~ARK~LG~fGL~sHAHTik----ikdLSGG 708 (807)
T KOG0066|consen 648 -----HRLRIGWFDQHANEALNGEETPVEYLQRKFN------LP----YQEARKQLGTFGLASHAHTIK----IKDLSGG 708 (807)
T ss_pred -----ceeeeechhhhhHHhhccccCHHHHHHHhcC------CC----hHHHHHHhhhhhhhhccceEe----eeecCCc
Confidence 234678877753 33344566666643211 11 233456788889988888763 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
||-||++|---+..|+||||||||++||.++...+.++|++. .-.||+++||-.
T Consensus 709 QKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR 762 (807)
T KOG0066|consen 709 QKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER 762 (807)
T ss_pred chHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc
Confidence 999999999999999999999999999999999998888765 458999999865
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.85 E-value=1.4e-20 Score=169.34 Aligned_cols=182 Identities=25% Similarity=0.409 Sum_probs=134.1
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
...|+++++.|.|+. ..+++-|+|+.++.|....++|.||||||||||+|+|-.-.+. |.|.++|.
T Consensus 11 ~~aievsgl~f~y~~------------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~--~~v~Vlgr 76 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV------------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG--GVVQVLGR 76 (291)
T ss_pred cceEEEeccEEeccc------------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC--CeEEEcCc
Confidence 346999999998853 2479999999999999999999999999999999999655443 89999997
Q ss_pred cCch--------------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccc
Q 015591 256 PKVQ--------------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321 (404)
Q Consensus 256 ~~~~--------------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 321 (404)
+.-. .++.+..++-.. -.+....++.+ +.|+.. .... ++-+++++.++++-..
T Consensus 77 saFhDt~l~~Sgdl~YLGgeW~~~~~~age-vplq~D~sae~-mifgV~-----g~dp----~Rre~LI~iLDIdl~W-- 143 (291)
T KOG2355|consen 77 SAFHDTSLESSGDLSYLGGEWSKTVGIAGE-VPLQGDISAEH-MIFGVG-----GDDP----ERREKLIDILDIDLRW-- 143 (291)
T ss_pred CccccccccccCceeEeccccccccccccc-ccccccccHHH-HHhhcc-----CCCh----hHhhhhhhheeccceE--
Confidence 5321 122222222221 11222345543 444421 1111 3345677776664221
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecC
Q 015591 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQ 389 (404)
Q Consensus 322 ~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~ 389 (404)
. .+.+|-|||+||.|++.|++.-++|+|||-|--||..++..+++.+++-++ +|.||+..||-
T Consensus 144 R-----mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHI 207 (291)
T KOG2355|consen 144 R-----MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHI 207 (291)
T ss_pred E-----EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeee
Confidence 1 246999999999999999999999999999999999999999999999886 49999999995
No 396
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.84 E-value=2e-20 Score=169.33 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELV----ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~----~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||||++|||+++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|++||+++ ....+|+++.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~ 169 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIG 169 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEE
Confidence 9999999999999996 699999999999999999999999999998767899999999975 5678999875
No 397
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.84 E-value=1.3e-20 Score=184.36 Aligned_cols=167 Identities=25% Similarity=0.371 Sum_probs=124.7
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC------CCceeeEEEECCccCchhhhcceeEEeecC-CCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT------TGSMEGEIKIGGYPKVQETFARVSGYCEQT-DIH 275 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~------~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~-~~~ 275 (404)
...+|+|||++++||++++|+|+|||||||||++|+|... +.+++|.|.+--.. ..+.++.. +.-
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~ 466 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPE 466 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccc
Confidence 4679999999999999999999999999999999999421 22346777653211 12233332 222
Q ss_pred CCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 015591 276 SPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 355 (404)
Q Consensus 276 ~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLD 355 (404)
+..-|+.|.+.- . ..+...+.+++...|+.+- ..-....+.||.|||.|..||.++..+|.+++.|
T Consensus 467 f~~~tilehl~s------~-----tGD~~~AveILnraGlsDA---vlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 467 FGEVTILEHLRS------K-----TGDLNAAVEILNRAGLSDA---VLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cCchhHHHHHhh------c-----cCchhHHHHHHHhhccchh---hhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 334566665532 0 1112335678888888642 2111224579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPS 391 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~ 391 (404)
|-.|.||+.++..+.+-|.+++++ |.|++++||+|+
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE 569 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE 569 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 999999999999999999999865 999999999986
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.84 E-value=7.1e-21 Score=188.20 Aligned_cols=157 Identities=26% Similarity=0.378 Sum_probs=116.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh---h---------hcc------eeEEeecCCCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE---T---------FAR------VSGYCEQTDIH 275 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~---~---------~~~------~~g~v~Q~~~~ 275 (404)
.++|++++|+|+||-||||-+|+|+|...|.- |+ .++.|-..+ . |++ ++..-+|--.+
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL--G~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL--GR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC--CC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence 47899999999999999999999999776642 43 223221110 0 110 01111221111
Q ss_pred C---CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 015591 276 S---PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 352 (404)
Q Consensus 276 ~---~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iL 352 (404)
. ...+|.|-|.-. ...-..+++++.++|.+..|+-+. +|||||-||++||.+++++++++
T Consensus 173 iPk~~KG~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY 235 (591)
T COG1245 173 IPKVVKGKVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVY 235 (591)
T ss_pred HHHHhcchHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEE
Confidence 1 123666654321 112346889999999999988764 79999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 353 FMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 353 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
++|||||-||...+..+.+.+++|++.+++||++.||+.
T Consensus 236 ~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa 274 (591)
T COG1245 236 FFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA 274 (591)
T ss_pred EEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH
Confidence 999999999999999999999999977999999999985
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.83 E-value=7.6e-21 Score=175.17 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=98.5
Q ss_pred eeeeeeeeeeCCc-EEEEEcCCCCcHHHHHHHHh--------CCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCC
Q 015591 206 LLYDVTGSLRPGV-LTALMGVSGAGKTTLLDVLA--------GRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS 276 (404)
Q Consensus 206 iL~~vs~~i~~Ge-~~alvG~sGaGKSTLl~~L~--------g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~ 276 (404)
-.-++|+++.+|+ +++|+|||||||||||+.|+ |...|.. . ...++|+.|...
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~--~--------------~~~~~~~~~~~~-- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA--E--------------GSSLPVFENIFA-- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc--c--------------cccCcCccEEEE--
Confidence 3457999999995 89999999999999999998 3222110 0 001233333100
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDE 356 (404)
.++..+..+.. ...+|+||||++.|+++ +.+|+++++||
T Consensus 78 -----------------------------------~lg~~~~l~~~-----~s~fs~g~~~~~~i~~~-~~~p~llllDE 116 (200)
T cd03280 78 -----------------------------------DIGDEQSIEQS-----LSTFSSHMKNIARILQH-ADPDSLVLLDE 116 (200)
T ss_pred -----------------------------------ecCchhhhhcC-----cchHHHHHHHHHHHHHh-CCCCcEEEEcC
Confidence 00111111111 23699999999999988 58999999999
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 357 PTTGLDARAAAIIM-RAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 357 PtsgLD~~~~~~i~-~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||+..+..+. ..++++.+.|.|+|++||+. ++...+|+++.
T Consensus 117 p~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~ 162 (200)
T cd03280 117 LGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREG 162 (200)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCC
Confidence 99999999999996 46788776799999999984 67889998764
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=1.8e-20 Score=174.47 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CeEEEEecCCCHHHHHhcccc
Q 015591 329 NGLSTEQRKRLTIAVEL----VANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-G-RTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL----~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g-~tii~~tH~~~~~i~~~fd~~ 401 (404)
..||+|||||+.+|+++ +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||++. ++.+.+|++
T Consensus 125 ~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~ 202 (213)
T cd03277 125 HHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEKM 202 (213)
T ss_pred hhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCce
Confidence 47999999998877554 5899999999999999999999999999998765 5 58999999986 455666643
No 401
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.83 E-value=6.3e-21 Score=191.06 Aligned_cols=174 Identities=22% Similarity=0.320 Sum_probs=128.6
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
...+...++|.+++|..+.|+||||||||+|.++|+|+.+. ..|...+ | ....+-|+||.+..- ..|.|
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv--y~g~L~~---P-----~~~~mFYIPQRPYms-~gtlR 562 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV--YNGLLSI---P-----RPNNIFYIPQRPYMS-GGTLR 562 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc--cCCeeec---C-----CCcceEeccCCCccC-cCccc
Confidence 35588999999999999999999999999999999998764 2354432 1 123478999987765 67899
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP----GVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~----~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPt 358 (404)
|.+.++...-... .+.-.++..+.+++.+.|+++...-.|.. ...-||||||||+.+||.+.++|+.-+|||-|
T Consensus 563 DQIIYPdS~e~~~--~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 563 DQIIYPDSSEQMK--RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred ceeecCCcHHHHH--hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 9988753211100 00111234455666655554443332221 11249999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCH
Q 015591 359 TGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSI 392 (404)
Q Consensus 359 sgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~ 392 (404)
|+..+.-+..+.+..++ .|.+.|-+||+|+.
T Consensus 641 sAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 641 SAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred cccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 99999999888887763 59999999999984
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.83 E-value=5.6e-21 Score=175.99 Aligned_cols=135 Identities=15% Similarity=0.159 Sum_probs=99.5
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++... .+++|.+.+++.+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC------ccCcccceEEEeccchh
Confidence 45788887765 79999999999999999999987432 11234433211 25667777889999999
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
|+.++... . ....+++.++++.+++ .+|+++|+||||+|+|+
T Consensus 79 ~l~~~~s~------~-~~e~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGISY------F-YAELRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccCh------H-HHHHHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 99875311 1 1122445666664431 68999999999999999
Q ss_pred HHHHHHHH-HHHHHHhCCCeEEEEecCCC
Q 015591 364 RAAAIIMR-AVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 364 ~~~~~i~~-~l~~l~~~g~tii~~tH~~~ 391 (404)
.....+.. .++++.+.|.|+|++||+++
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 99987754 67888767999999999986
No 403
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.6e-20 Score=185.59 Aligned_cols=192 Identities=21% Similarity=0.247 Sum_probs=143.3
Q ss_pred CCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 175 EPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
++..+++.+|+|.|++ +..+++.++++.++.-+..+++|+||+||||+++++.|-..| .+|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP 425 (582)
T ss_pred CCCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc
Confidence 4456899999987753 222689999999999999999999999999999999996664 347765543
Q ss_pred ccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCH
Q 015591 255 YPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLST 333 (404)
Q Consensus 255 ~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSg 333 (404)
|.+++|..|...-+..+.|-+--.+ ...+ +.. ..+.+++-+..+|+.. ++... ..+|||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~vd~~-~~~~--pG~----~~ee~r~hl~~~Gl~g~la~~s-----i~~LSG 485 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNAVDFM-EKSF--PGK----TEEEIRRHLGSFGLSGELALQS-----IASLSG 485 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHHHHHH-HHhC--CCC----CHHHHHHHHHhcCCCchhhhcc-----ccccCC
Confidence 4568898886554444444332222 1111 111 2344567788899974 23222 347999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||-||++|.....+|-+|+|||||+.||..+-..+.+.|+.. +-.||+|||+.+ =+-..|+++-+
T Consensus 486 GQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wv 551 (582)
T KOG0062|consen 486 GQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWV 551 (582)
T ss_pred cchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEE
Confidence 9999999999999999999999999999999998888888764 468999999976 36667877644
No 404
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2e-19 Score=173.90 Aligned_cols=71 Identities=20% Similarity=0.321 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVA----NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~----~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||+|||||+++|++++. +|++++|||||++||+..+..+++.|+++. .+.|+|++||++. +.+.+|+++.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~~~tii~isH~~~--~~~~~d~~~~ 244 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-RSHQVLCITHLPQ--VAAMADNHFL 244 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEechHH--HHHhcCcEEE
Confidence 499999999999997654 999999999999999999999999999986 4799999999985 5678998764
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.80 E-value=4.2e-19 Score=158.22 Aligned_cols=72 Identities=22% Similarity=0.355 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVA----NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~----~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||+++ +.+.+|+++.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~ 152 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIH 152 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEE
Confidence 499999999999999987 78999999999999999999999999987655899999999985 5677898764
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.78 E-value=3.9e-19 Score=166.41 Aligned_cols=140 Identities=20% Similarity=0.208 Sum_probs=101.5
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeE-EeecCCCCCCCCCHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSG-YCEQTDIHSPQITVE 282 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g-~v~Q~~~~~~~~Tv~ 282 (404)
..+.+|++++.++|++++|.||||+|||||++.++-. .+...+| ||+.....++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe-----
Confidence 4589999999999999999999999999999999721 1111222 4444221111
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVEL--VANPSIIFMDEP--- 357 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL--~~~p~iLlLDEP--- 357 (404)
.+++++..+++.+.. .+++|.|++|++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 123344445554322 136999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccc
Q 015591 358 TTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 358 tsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
|++||+.+.... .++.+.+ .|.++|++||+ .++.+.+|++.
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~ 163 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVP 163 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCC
Confidence 999999887543 3344443 48999999996 47888888764
No 407
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.75 E-value=1.6e-17 Score=189.89 Aligned_cols=110 Identities=21% Similarity=0.288 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEE
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVAN---PSIIFM 354 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~---p~iLlL 354 (404)
.|||.|.+.|... ..+....-+.++.+||..+ ..|.+- ..|||||.||+-||..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl---~LGq~~-~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF---------LKKIQKPLQALIDNGLGYL---PLGQNL-SSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCee---eCCCcC-CccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 4688888777521 1223444567777888643 345553 46999999999999999976 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
||||.||++...+.+++.|++|.+.|.|||+|.|++ ++.+.+|.++
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~ii 1772 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLI 1772 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEE
Confidence 999999999999999999999999999999999997 5788899886
No 408
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.74 E-value=4.3e-18 Score=157.29 Aligned_cols=137 Identities=13% Similarity=0.193 Sum_probs=97.7
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
+..+.+|+++++++|++++|+||||+||||+++++++..- +.+.-.+| +.....+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccCh
Confidence 3568999999999999999999999999999999987421 11111123 2233445666
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD 362 (404)
|++... ++..+..+.. .+.+|.|++|+ ..+.+++.+|++++||||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~~~-----~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMERN-----LSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccchh-----hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 666321 1222111111 23699999975 56667889999999999999999
Q ss_pred HHHHHHHH-HHHHHHHhCCCeEEEEecCCC
Q 015591 363 ARAAAIIM-RAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 363 ~~~~~~i~-~~l~~l~~~g~tii~~tH~~~ 391 (404)
+.....+. ..++.+.+.|.++|++||+.+
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 97766654 567777777999999999875
No 409
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.73 E-value=3.3e-17 Score=171.91 Aligned_cols=110 Identities=27% Similarity=0.404 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEE
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP---SIIFM 354 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p---~iLlL 354 (404)
.|||.|...|.... .+..+.-+.+..+||.- -..|.| ...|||||.||+-+|.+|.++. .++||
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgY---i~LGQp-atTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGY---IKLGQP-ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcce---EecCCc-cccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 37888888876421 11222234455567753 235665 3579999999999999999988 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
||||+||.....+++++.|.+|.+.|-|||+|.|++ ++...+|.++
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~II 895 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWII 895 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEE
Confidence 999999999999999999999999999999999998 4788888876
No 410
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.73 E-value=6.7e-18 Score=180.33 Aligned_cols=118 Identities=25% Similarity=0.421 Sum_probs=104.7
Q ss_pred CceeeecccCCHHHHHHHHHHHHHHHHHHhcccccCCCccchhhhhhccChHHHHHHHHHhhhcCCCCc-cccCCC--C-
Q 015591 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEFLAPRW-QKMLPT--N- 76 (404)
Q Consensus 1 ~fr~~~~~~~~~~~a~~~~~~~~~~~~~~~Gf~i~~~~~~~w~~W~~~i~p~~y~~~al~~nef~~~~~-~~~~~~--~- 76 (404)
+++++++++|+...|+.+++++++++++|+||++|.++||+||+|++|+||+.|||+|++.|||.+..+ +|...+ .
T Consensus 489 ~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~ 568 (617)
T TIGR00955 489 FGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGP 568 (617)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCC
Confidence 357899999999999999999999999999999999999999999999999999999999999999886 675321 1
Q ss_pred -cchhhhhhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 015591 77 -TTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120 (404)
Q Consensus 77 -~~~G~~~l~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 120 (404)
...|+++++.+|++. .++|.++++++++.++|.++.++++.+
T Consensus 569 c~~~g~~~l~~~g~~~--~~~~~~~~il~~~~~~~~~l~~~~L~~ 611 (617)
T TIGR00955 569 CPSSGEVILETLSFRN--ADLYLDLIGLVILIFFFRLLAYFALRI 611 (617)
T ss_pred CCcChHHHHHhcCCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 236899999999866 466999999999999999998888876
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.72 E-value=8.7e-18 Score=155.00 Aligned_cols=69 Identities=16% Similarity=0.272 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR-AVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
.++.+++| +..+.+++.+|+++|+||||+|+|+.....+.. .++.+.+.+.++|++||++ ++...+|++
T Consensus 91 ~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~ 160 (202)
T cd03243 91 TFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQV 160 (202)
T ss_pred eHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcC
Confidence 46766665 666678889999999999999999998888765 5666666789999999986 566677643
No 412
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.9e-17 Score=163.11 Aligned_cols=189 Identities=19% Similarity=0.234 Sum_probs=125.9
Q ss_pred cccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-----------hhh---
Q 015591 197 RGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-----------ETF--- 262 (404)
Q Consensus 197 ~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-----------~~~--- 262 (404)
...+..++.++.|.|+.|-.|..++||||||-||||||+.|+.+...-+..=++++..+.+.. ...
T Consensus 270 F~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl 349 (807)
T KOG0066|consen 270 FDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRL 349 (807)
T ss_pred eeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHH
Confidence 333445677999999999999999999999999999999999863211112345444432100 000
Q ss_pred ------cceeEEeecCCCCCCCCCHHHHHHHH-hhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHH
Q 015591 263 ------ARVSGYCEQTDIHSPQITVEESVIFS-AWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTE 334 (404)
Q Consensus 263 ------~~~~g~v~Q~~~~~~~~Tv~e~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgG 334 (404)
++..+-+.+ ...|+.|-+.-. ..+|.. ......+++.+++.-+|+..- .+++ ...+|||
T Consensus 350 ~lLeee~~L~~q~e~-----Gd~taaErl~~v~~ELrai---GA~sAEarARRILAGLGFskEMQ~rP-----t~kFSGG 416 (807)
T KOG0066|consen 350 ALLEEEAKLMSQIEE-----GDTTAAERLKEVADELRAI---GADSAEARARRILAGLGFSKEMQERP-----TTKFSGG 416 (807)
T ss_pred HHHHHHHHHHHHHHc-----CchHHHHHHHHHHHHHHHh---ccccchhHHHHHHhhcCCChhHhcCC-----ccccCCc
Confidence 111111111 234666655432 223321 112234567788888887642 3333 3469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
.|-||++||||...|-+|.|||||+.||-.+..-+-..|+... +|.++++||-.. +-+.|..++
T Consensus 417 WRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgF-LD~VCtdII 480 (807)
T KOG0066|consen 417 WRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGF-LDSVCTDII 480 (807)
T ss_pred eeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccch-HHHHHHHHh
Confidence 9999999999999999999999999999988777777776653 799999999873 455565544
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2e-16 Score=152.42 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 329 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~---------~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
+-+|+||||+++||++|+ .+|++++|||||++||+..+..+.+.++++ +. +++++|+.
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~q-~ii~~~~~ 248 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---VQ-TFVTTTDL 248 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---CC-EEEEeCCc
Confidence 348999999999999985 799999999999999999999999998764 34 45555544
No 414
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.67 E-value=2.7e-16 Score=154.80 Aligned_cols=206 Identities=24% Similarity=0.335 Sum_probs=145.9
Q ss_pred CCCcEEEEeceeEEeecccccc--cccccc-CceeeeeeeeeeeeCC-----cEEEEEcCCCCcHHHHHHHHhCCCCCCc
Q 015591 174 FEPLTVAFQDLKYYIDTPLEMR--ERGFTE-KKLRLLYDVTGSLRPG-----VLTALMGVSGAGKTTLLDVLAGRKTTGS 245 (404)
Q Consensus 174 ~~~~~i~~~~l~~~~~~~~~~~--~~~~~~-~~~~iL~~vs~~i~~G-----e~~alvG~sGaGKSTLl~~L~g~~~~~~ 245 (404)
.++..++.++++|.+......+ --.|.+ +.+..+.+..+.|+.| |++..+|+||.||||++++++|+.+|+.
T Consensus 316 ten~rfR~~~l~f~~~~~~~~ek~~~~y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~ 395 (592)
T KOG0063|consen 316 TENLRFRPECLVFLASDLSSEDRRTGRYSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE 395 (592)
T ss_pred cccccccchhheeeeccccchhhhhheeccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc
Confidence 3444556666666553321110 001222 2345677888888877 5779999999999999999999888753
Q ss_pred eeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccC
Q 015591 246 MEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325 (404)
Q Consensus 246 ~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~ 325 (404)
.|+|-. -.++|=+|.-.--...|||+-+.--. |. .-.....+.++++-|.+++..|..+
T Consensus 396 -~~e~p~-----------lnVSykpqkispK~~~tvR~ll~~kI--r~-----ay~~pqF~~dvmkpL~ie~i~dqev-- 454 (592)
T KOG0063|consen 396 -GGEIPV-----------LNVSYKPQKISPKREGTVRQLLHTKI--RD-----AYMHPQFVNDVMKPLQIENIIDQEV-- 454 (592)
T ss_pred -cCcccc-----------cceeccccccCccccchHHHHHHHHh--Hh-----hhcCHHHHHhhhhhhhHHHHHhHHh--
Confidence 344321 13567677544445678888664321 11 0112356778888888888888775
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHhccccccC
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.+|||||.||+++|.+|-+.+++.+.|||.+-||++.+...-+.+++.. +..+|-.++.||.-.+.+ +.|++++|
T Consensus 455 ---q~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTY-ladrvivf 530 (592)
T KOG0063|consen 455 ---QGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATY-LADRVIVF 530 (592)
T ss_pred ---hcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHh-hcceeEEE
Confidence 4799999999999999999999999999999999999998888888864 568999999999754444 57888764
No 415
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.66 E-value=3e-16 Score=172.51 Aligned_cols=121 Identities=23% Similarity=0.374 Sum_probs=92.9
Q ss_pred CCCCCHHHHHHHHhhhhcCcc---CC---hhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcC
Q 015591 276 SPQITVEESVIFSAWLRLAPE---IN---SKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVAN 348 (404)
Q Consensus 276 ~~~~Tv~e~l~~~~~~~~~~~---~~---~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~ 348 (404)
+..+||.|.+.|...+...+. +. ..+..++++ .++.+||.+. .|+.+ ..|||||||||.||++|+.+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 457899999998543322110 00 011223343 5777788765 56654 47999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 349 P--SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 349 p--~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
| +++||||||+|||+..+..+.+.|++++++|.|||+++|+++ ++ ..+|+++.+
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~L 563 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDI 563 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEe
Confidence 7 899999999999999999999999999878999999999987 34 469998753
No 416
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=6.7e-16 Score=169.47 Aligned_cols=120 Identities=25% Similarity=0.377 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHhhhhcCccCCh------hhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 277 PQITVEESVIFSAWLRLAPEINS------KTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~------~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
-.|||.|.+.|...+........ .+..+++ +.+..++|... .++.+ .+|||||+||+.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCC
Confidence 36889998888755422110000 0111122 23555677544 35443 479999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 350 --SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 350 --~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+++||||||+|||+.....+++.|++++++|.|||+|+|+++ .+ ..+|+++.+
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~L 561 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDI 561 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEe
Confidence 899999999999999999999999999888999999999986 34 589998753
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.64 E-value=9.8e-16 Score=142.89 Aligned_cols=139 Identities=16% Similarity=0.096 Sum_probs=90.0
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
..+.+|+++..++ ++++|+|||||||||||+.+++.... |. .|.... ..+..++++.| .++.+++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp--~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVP--ASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeec--cccceecceee---EeccCCchh
Confidence 4589999999987 99999999999999999999874322 11 122221 11234566654 345556655
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH--HHHHHHHHHHHhcCCCEEEEeCC---C
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE--QRKRLTIAVELVANPSIIFMDEP---T 358 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG--qrqRl~IAraL~~~p~iLlLDEP---t 358 (404)
++..+ .|.= +.++++-+...+.+|++++|||| |
T Consensus 85 ~ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DLAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 55432 1111 22233333334579999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccc
Q 015591 359 TGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 359 sgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~ 401 (404)
+++|.... ....++.+.+. +.++|++||+. ++.+..|++
T Consensus 123 ~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~ 162 (216)
T cd03284 123 STYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKL 162 (216)
T ss_pred ChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcC
Confidence 88887652 23344555555 89999999995 566666654
No 418
>PLN03211 ABC transporter G-25; Provisional
Probab=99.57 E-value=3.2e-15 Score=160.40 Aligned_cols=116 Identities=18% Similarity=0.144 Sum_probs=90.8
Q ss_pred ceeeecccCCHHHHHHHHHHHHHHHHHHhcccccCCCccchhhhhhccChHHHHHHHHHhhhcCCCC-----ccccCCC-
Q 015591 2 FRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEFLAPR-----WQKMLPT- 75 (404)
Q Consensus 2 fr~~~~~~~~~~~a~~~~~~~~~~~~~~~Gf~i~~~~~~~w~~W~~~i~p~~y~~~al~~nef~~~~-----~~~~~~~- 75 (404)
+++++|++||+..|+.++++++.++++|+||+|+ +||+||+|++|+||+.|||||++.|||.+.+ ++|..+.
T Consensus 536 g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~ 613 (659)
T PLN03211 536 GLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHG 613 (659)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCccc
Confidence 5689999999999999999999999999999997 7999999999999999999999999997643 4675421
Q ss_pred CcchhhhhhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 015591 76 NTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTFL 121 (404)
Q Consensus 76 ~~~~G~~~l~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 121 (404)
....+-.++....+. ....|.++++++++.+++-++.++++...
T Consensus 614 ~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 614 SDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred CCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 011111122222222 23578999999999999988888777643
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.57 E-value=2.9e-15 Score=136.35 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCeEEEEecCCCHHHHHhccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM-RAVKNVVDT-GRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~-~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~ 400 (404)
+.+|+|++|...+.+ .+.+|+++|+|||++|+|+.....+. ..++.+.++ +.++|++||++ ++...+|+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADE 130 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhc
Confidence 358888776433332 23499999999999999999877765 556777664 89999999997 46666663
No 420
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.56 E-value=1.3e-14 Score=139.38 Aligned_cols=116 Identities=22% Similarity=0.241 Sum_probs=78.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhc
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL 293 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~ 293 (404)
.-++|+||||||||||+++|+|...++ +|+|.++|+++.. ..+...+++++|.+ ....++|.||..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~--~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG--ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC--CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch-------
Confidence 578999999999999999999998875 5999999987531 23444556777744 234444444311
Q ss_pred CccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 015591 294 APEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373 (404)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l 373 (404)
+. + | ..+..+..+|+++++|||++ .+.+...+
T Consensus 182 --------k~---~--------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 --------KA---E--------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred --------HH---H--------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 00 0 0 12223336999999999974 33345555
Q ss_pred HHHHhCCCeEEEEecCCCH
Q 015591 374 KNVVDTGRTIVCTIHQPSI 392 (404)
Q Consensus 374 ~~l~~~g~tii~~tH~~~~ 392 (404)
+.+. +|.|+|+++|+++.
T Consensus 214 ~~~~-~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 214 EALH-AGVSIIATAHGRDV 231 (270)
T ss_pred HHHh-CCCEEEEEechhHH
Confidence 5543 69999999998764
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.56 E-value=4.1e-15 Score=138.63 Aligned_cols=70 Identities=21% Similarity=0.372 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 330 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~----~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
.||||||.+++||--|+ .++++++||||.++||...+..+.+.|+++.+ +.-+|++||++ ++++.+|+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~--~~~~~a~~~~ 209 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNP--EMFEDADKLI 209 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-H--HHHTT-SEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc--cccccccccc
Confidence 49999999999997653 56789999999999999999999999999864 57899999996 5788888764
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.53 E-value=1.3e-14 Score=157.49 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=91.8
Q ss_pred eeeeeeCC-cEEEEEcCCCCcHHHHHHHHhCC-CCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHH
Q 015591 210 VTGSLRPG-VLTALMGVSGAGKTTLLDVLAGR-KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIF 287 (404)
Q Consensus 210 vs~~i~~G-e~~alvG~sGaGKSTLl~~L~g~-~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~ 287 (404)
+|+.+.++ ++++|.||||+||||||++|+|. ..+ ..| .+|+..... .+.+.+.+..
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a--q~G------------------~~Vpa~~~~--~~~~~d~i~~ 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF--QSG------------------IPIPANEHS--EIPYFEEIFA 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH--HhC------------------CCccCCccc--cccchhheee
Confidence 68888877 89999999999999999999985 111 112 123322110 0011111100
Q ss_pred HhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 015591 288 SAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367 (404)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~ 367 (404)
.+... +.+.+ . .+.+|+|++++..|++++ .+|+++|||||++|+|+....
T Consensus 372 --------~i~~~------~si~~---------~------LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 372 --------DIGDE------QSIEQ---------N------LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred --------ecChH------hHHhh---------h------hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 00000 01111 1 236999999999998876 789999999999999999999
Q ss_pred HH-HHHHHHHHhCCCeEEEEecCCCHHHHH
Q 015591 368 II-MRAVKNVVDTGRTIVCTIHQPSIDIFE 396 (404)
Q Consensus 368 ~i-~~~l~~l~~~g~tii~~tH~~~~~i~~ 396 (404)
.+ ...++.+.+.|.++|++||+.+...+.
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~eL~~~~ 451 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKELKALM 451 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 98 567788877799999999998654443
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.53 E-value=1e-13 Score=129.06 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=85.8
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC-CCCceeeEEEECCccCchhhhcceeEEeecCCCCCC-CCCHHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK-TTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSP-QITVEE 283 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~-~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~-~~Tv~e 283 (404)
+-+|+++.=..+.+++|.||||+|||||||.++... .. ..|...... .-.++|..|....+. ..++.+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la--~~G~~v~a~--------~~~~~~~d~i~~~l~~~~si~~ 87 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA--HIGSFVPAD--------SATIGLVDKIFTRMSSRESVSS 87 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH--hCCCeeEcC--------CcEEeeeeeeeeeeCCccChhh
Confidence 555666542223799999999999999999998421 01 124433211 123566666322110 011111
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS--TEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS--gGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
++| .-+-||++++++++.+|+++|||||++|+
T Consensus 88 ----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gt 121 (213)
T cd03281 88 ----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGT 121 (213)
T ss_pred ----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 122 34569999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC---CCeEEEEecCCCH
Q 015591 362 DARAAAII-MRAVKNVVDT---GRTIVCTIHQPSI 392 (404)
Q Consensus 362 D~~~~~~i-~~~l~~l~~~---g~tii~~tH~~~~ 392 (404)
|+.....+ ...++++.+. +.++|++||+++.
T Consensus 122 d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 122 DTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 99765544 5688888654 3589999999863
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.52 E-value=1.6e-14 Score=119.14 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=61.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc---hhhhcceeEEeecCCCCCCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV---QETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~~~~~~~~g~v~Q~~~~~~~~T 280 (404)
..+|+++++++++|++++|+||||||||||++++. +|++.++|.+.. ....++.+++++|+ .+..|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhh
Confidence 45899999999999999999999999999999986 388999998753 23455667788775 56779
Q ss_pred HHHHHHHH
Q 015591 281 VEESVIFS 288 (404)
Q Consensus 281 v~e~l~~~ 288 (404)
++|||.+.
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999873
No 425
>PRK00064 recF recombination protein F; Reviewed
Probab=99.49 E-value=5.5e-13 Score=133.68 Aligned_cols=60 Identities=25% Similarity=0.369 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 329 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~---------~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
..+|.||+|++.||+.|+ .+|++|+||||+++||+..+..+.+.+.++ +..+++++|++.
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~ 340 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE 340 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh
Confidence 469999999999999886 799999999999999999999999988753 458899999875
No 426
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.46 E-value=1.2e-13 Score=136.18 Aligned_cols=153 Identities=26% Similarity=0.411 Sum_probs=109.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEe----------------------ecC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYC----------------------EQT 272 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v----------------------~Q~ 272 (404)
+||++.+++|-||-||||-+++++|..+|.- |.- .++ ..+...++|. +|.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl--g~~-~~p-----p~w~~il~~frgselq~yftk~le~~lk~~~kpQy 169 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL--GRY-DNP-----PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQY 169 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC--CCC-CCC-----cchHHHhhhhhhHHHhhhhhhhccccccCcCChHH
Confidence 6899999999999999999999999877642 321 111 1111111111 110
Q ss_pred CCCCC---CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 273 DIHSP---QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 273 ~~~~~---~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
-.++| ..+|.+.+. ....+...+++++.++|.+..++-+. .|||||-||.+||.+-+.+.
T Consensus 170 vd~ipr~~k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~a 232 (592)
T KOG0063|consen 170 VDQIPRAVKGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKA 232 (592)
T ss_pred HHHHHHHHHHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhc
Confidence 00011 012222221 11122345677888888888877654 69999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCH
Q 015591 350 SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSI 392 (404)
Q Consensus 350 ~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~ 392 (404)
++.++|||.+.||...+.+-...|+.+..-.+=||++.||++.
T Consensus 233 dvyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV 275 (592)
T KOG0063|consen 233 DVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV 275 (592)
T ss_pred ceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH
Confidence 9999999999999999999999999998778999999999973
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.44 E-value=1.2e-13 Score=128.36 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPT-----TGLDARAAAIIMRAVKNVVD 378 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPt-----sgLD~~~~~~i~~~l~~l~~ 378 (404)
|++++.|||+++.+|+++++|||| ++||+..++.+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999864
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.43 E-value=1.1e-12 Score=122.70 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=84.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC-CCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR-KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~-~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
..+.+|+++.+++|++++|+||||+||||+++++++. ..+ ..|..... .. -.++|..|- +-.+...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la--~~G~~v~a-~~-------~~~~~~~~i---~~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA--QIGSFVPA-SS-------ATLSIFDSV---LTRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH--hCCCEEEc-Cc-------eEEeccceE---EEEecCc
Confidence 4589999999999999999999999999999999983 222 13543221 11 112232221 0000000
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD 362 (404)
|++. . +.+.++ .|-+|++-...-+.+|+++|||||.+|.|
T Consensus 85 d~~~------------------------------~---------~~StF~-~e~~~~~~il~~~~~~sLvllDE~~~gT~ 124 (222)
T cd03287 85 DSIQ------------------------------H---------GMSTFM-VELSETSHILSNCTSRSLVILDELGRGTS 124 (222)
T ss_pred cccc------------------------------c---------ccchHH-HHHHHHHHHHHhCCCCeEEEEccCCCCCC
Confidence 1000 0 001111 22333333334466899999999999988
Q ss_pred HHHHHHH-HHHHHHHHhC-CCeEEEEecCCCH
Q 015591 363 ARAAAII-MRAVKNVVDT-GRTIVCTIHQPSI 392 (404)
Q Consensus 363 ~~~~~~i-~~~l~~l~~~-g~tii~~tH~~~~ 392 (404)
+.....+ ...++.+.+. +.++|++||+++.
T Consensus 125 ~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l 156 (222)
T cd03287 125 THDGIAIAYATLHYLLEEKKCLVLFVTHYPSL 156 (222)
T ss_pred hhhHHHHHHHHHHHHHhccCCeEEEEcccHHH
Confidence 7776664 4667777765 8899999999864
No 429
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.36 E-value=1.7e-13 Score=130.24 Aligned_cols=177 Identities=18% Similarity=0.153 Sum_probs=99.7
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE---ECCccCchhhhcce---eEEeecCCCCCCCCCH---H
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK---IGGYPKVQETFARV---SGYCEQTDIHSPQITV---E 282 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~---i~G~~~~~~~~~~~---~g~v~Q~~~~~~~~Tv---~ 282 (404)
+.+.+||.++|+||+|+|||||++.|++..........+. +.........+.+. +-++.+.+. .+...+ +
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~ 89 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAE 89 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHH
Confidence 4678999999999999999999999998654321112322 22211222222222 222333232 111000 1
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH--------HHHHHHHHHHhcCCCEEEE
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ--------RKRLTIAVELVANPSIIFM 354 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq--------rqRl~IAraL~~~p~iLlL 354 (404)
..+......+.. ... .--.++++- .+....+...+..|. .+|||+ +||+++||++.++++|.+|
T Consensus 90 ~~~~~a~~~~~~-G~~---vll~iDei~---r~a~a~~ev~~~~G~-~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l 161 (249)
T cd01128 90 MVLEKAKRLVEH-GKD---VVILLDSIT---RLARAYNTVVPPSGK-ILSGGVDANALHKPKRFFGAARNIEEGGSLTII 161 (249)
T ss_pred HHHHHHHHHHHC-CCC---EEEEEECHH---HhhhhhhhccccCCC-CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe
Confidence 111111111100 000 000001111 122233444555443 589999 9999999999999999999
Q ss_pred eCCCCCCCHHHHHH-HHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAAI-IMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~~-i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+.+|+.+... ++ +.++...+.|.|+++|+++ -...||.+.+
T Consensus 162 --~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~v 205 (249)
T cd01128 162 --ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDI 205 (249)
T ss_pred --eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEE
Confidence 999999766554 54 5555546899999999985 3556776643
No 430
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.32 E-value=3.4e-12 Score=118.38 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 330 GLSTEQRKRLTIAVELVANP---SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p---~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.+|.|+||.+.|+..+...+ .++++|||-++|+|..+..+++.|+++.+.+.-+|++||.|.
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 47999999999998888877 899999999999999999999999887755789999999985
No 431
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.32 E-value=2.9e-12 Score=135.65 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGLSTEQRKRLTIAVELVAN----PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~----p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..|||||+||++||++++.. |++|||||||+|||+.++..+.+.|+++. ++++||++||++. +...+|+++.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~~~~vi~iTH~~~--~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-ERHQVLCVTHLPQ--VAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEEChHH--HHHhcCeEEE
Confidence 36899999999999999985 69999999999999999999999999987 4899999999985 4568998865
No 432
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.31 E-value=3.8e-12 Score=138.79 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR-AVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~tH~~~ 391 (404)
+.+|+|++|++.|++++ .+|+++|||||++|+|+.....+.. +++.+.+.|.++|++||+++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e 451 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE 451 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH
Confidence 46999999999999998 8999999999999999999888864 56777777999999999965
No 433
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.28 E-value=9.1e-12 Score=116.22 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=86.2
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
..+-+|+++..++|++++|.||||+||||+++.+++..-... .| ..+.... ..++++ +..+..+...|
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~-~G------~~vpa~~--~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ-MG------MDVPAKS--MRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH-cC------CccCccc--cEeccc---cEEEEecCccc
Confidence 468999999999999999999999999999999987421100 01 1111110 111111 11111111111
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
++..+ .+.+. .|-+|++-....+.+|++++||||++|+|+
T Consensus 85 ~~~~~---------------------------------------~StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 85 DIMKG---------------------------------------ESTFM-VELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccccC---------------------------------------cchHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 11100 01111 233333333344578999999999999999
Q ss_pred HHHHHHHHH-HHHHHhC-CCeEEEEecCCCH
Q 015591 364 RAAAIIMRA-VKNVVDT-GRTIVCTIHQPSI 392 (404)
Q Consensus 364 ~~~~~i~~~-l~~l~~~-g~tii~~tH~~~~ 392 (404)
.....+... ++.+.+. +.++|++||+++.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~el 155 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHSL 155 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 999998887 6777765 8999999999753
No 434
>PRK10869 recombination and repair protein; Provisional
Probab=99.28 E-value=7.1e-12 Score=132.06 Aligned_cols=71 Identities=15% Similarity=0.338 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVA----NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~----~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+||||+||++||++++. +|+++|+|||++|||..++..+.+.|+++. ++.+||||||+|. +...+|+.+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~~~qvi~iTH~~~--~~~~ad~~~~ 504 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-ESTQVMCVTHLPQ--VAGCGHQHFF 504 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH--HHHhCCEEEE
Confidence 479999999999999997 589999999999999999999999999996 4799999999985 5578887664
No 435
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.27 E-value=7.8e-12 Score=133.23 Aligned_cols=117 Identities=27% Similarity=0.506 Sum_probs=102.0
Q ss_pred eeeecccCCHHHHHHHHHHHHHHHHHHhcccccCCCccchhhhhhccChHHHHHHHHHhhhcCCCCccccCCC---Ccch
Q 015591 3 RFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEFLAPRWQKMLPT---NTTI 79 (404)
Q Consensus 3 r~~~~~~~~~~~a~~~~~~~~~~~~~~~Gf~i~~~~~~~w~~W~~~i~p~~y~~~al~~nef~~~~~~~~~~~---~~~~ 79 (404)
-+++++.||...|+.++.+++..|++++||+++.+.+|.||+|++|+|+..|+|||++.|||.+....|...+ -...
T Consensus 488 ~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~ 567 (613)
T KOG0061|consen 488 LFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCEST 567 (613)
T ss_pred HHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCccccc
Confidence 3688999999999999999999999999999999999999999999999999999999999998555554321 2457
Q ss_pred hhhhhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 015591 80 GQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTFL 121 (404)
Q Consensus 80 G~~~l~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 121 (404)
|.+++...++.. ..+|.++.+++++.+++-++.++++.+.
T Consensus 568 ~~~~l~~~~~~~--~~~~~~l~~l~~~~~~~~il~y~~L~~~ 607 (613)
T KOG0061|consen 568 GEDVLKQLGFED--SSFWLDLLVLLAFIVFFRVLGYLALRFR 607 (613)
T ss_pred HHHHHHhcCCcc--cccchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 888999888754 5679999999999999999988888764
No 436
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.27 E-value=5.2e-12 Score=133.66 Aligned_cols=71 Identities=15% Similarity=0.329 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHh
Q 015591 329 NGLSTEQRKRLTIAVELV----------ANPSIIFMDEPT-TGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEA 397 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~----------~~p~iLlLDEPt-sgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~ 397 (404)
..||||||||++||++|+ .+|++||||||| ++||+.+...+.+.|+++ .|.|||++||++. +...
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~~ 542 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQK 542 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chhh
Confidence 479999999999999887 599999999998 789999999999999998 5899999999964 5677
Q ss_pred cccccc
Q 015591 398 FDEVKQ 403 (404)
Q Consensus 398 fd~~l~ 403 (404)
+|+++.
T Consensus 543 ~d~~~~ 548 (562)
T PHA02562 543 FDRHLK 548 (562)
T ss_pred hhcEEE
Confidence 898865
No 437
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=1.3e-11 Score=139.33 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHh
Q 015591 328 VNGLSTEQRKRLTIAVELVA----------NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEA 397 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~----------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~ 397 (404)
+..|||||++|++||+||+. +|++|||||||+|||+.+...+++.|+++.+.|++|++|||++. .....
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~~~ 1026 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRERI 1026 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHhh
Confidence 45799999999999999985 79999999999999999999999999999878999999999986 46667
Q ss_pred cccccc
Q 015591 398 FDEVKQ 403 (404)
Q Consensus 398 fd~~l~ 403 (404)
+|++.+
T Consensus 1027 ~~~i~v 1032 (1042)
T TIGR00618 1027 PHRILV 1032 (1042)
T ss_pred CCEEEE
Confidence 787764
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.24 E-value=8.5e-11 Score=110.74 Aligned_cols=134 Identities=20% Similarity=0.211 Sum_probs=80.0
Q ss_pred eeeCCcEEEEEcCCCCcHHHH-HHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhh
Q 015591 213 SLRPGVLTALMGVSGAGKTTL-LDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWL 291 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTL-l~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~ 291 (404)
-+++|+++.|.|+|||||||| ++++++....+. . +.|+.. ..|..+.+.....+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~--~-----------------~~yi~~------e~~~~~~~~~~~~~ 74 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY--S-----------------VSYVST------QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC--c-----------------EEEEeC------CCCHHHHHHHHHHh
Confidence 489999999999999999999 688887544321 1 233332 12333333332211
Q ss_pred hcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CH
Q 015591 292 RLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV----ANPSIIFMDEPTTGL----DA 363 (404)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~----~~p~iLlLDEPtsgL----D~ 363 (404)
.. . +++.... +.-...+. .| .+|+++.++-.+.+.+- .+|+++++||||+++ |+
T Consensus 75 g~--~---------~~~~~~~-~~l~~~~~---~~---~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~ 136 (230)
T PRK08533 75 GY--D---------INKKLIS-GKLLYIPV---YP---LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASE 136 (230)
T ss_pred CC--c---------hHHHhhc-CcEEEEEe---cc---cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcch
Confidence 10 0 0111110 10000111 01 25666555544444333 369999999999999 88
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecC
Q 015591 364 RAAAIIMRAVKNVVDTGRTIVCTIHQ 389 (404)
Q Consensus 364 ~~~~~i~~~l~~l~~~g~tii~~tH~ 389 (404)
...+.+++.++++++.|.|+++++|.
T Consensus 137 ~~~~~l~~~l~~l~~~g~tvi~t~~~ 162 (230)
T PRK08533 137 VAVNDLMAFFKRISSLNKVIILTANP 162 (230)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 88888999999998778877776554
No 439
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=1.8e-11 Score=140.95 Aligned_cols=112 Identities=19% Similarity=0.126 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH------HHHHHHHHhcCCCE
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK------RLTIAVELVANPSI 351 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq------Rl~IAraL~~~p~i 351 (404)
..|+.|||.+ ..-. ... ..+.+......++. -+... |+.++.++ .||+|||| |++|||+++.+|++
T Consensus 1155 ~~~~~~~i~~-~~~~-~~~-~~~~~~~~~~~~~~--~~~~~-~~~~~~~~--~lS~Gq~~~~~~~~rlala~~~~~~~~i 1226 (1311)
T TIGR00606 1155 RGQDIEYIEI-RSDA-DEN-VSASDKRRNYNYRV--VMLKG-DTALDMRG--RCSAGQKVLASLIIRLALAETFCLNCGI 1226 (1311)
T ss_pred CccHHHHhhc-CCCC-ChH-HHHHHHcCchHHHh--ccCCC-CeecCCCC--CCchhhhhHhhHhHHHHHHHHHhcCCCE
Confidence 4689999987 2110 000 01111122223332 13233 56666543 69999999 99999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCeEEEEecCCCHHHHHhc
Q 015591 352 IFMDEPTTGLDARAAAIIMRAVKNVVD-----TGRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 352 LlLDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tii~~tH~~~~~i~~~f 398 (404)
|+|||||+|||+.+...+.+.|.++.. .|.|||+|||++. .+..++
T Consensus 1227 l~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~~ 1277 (1311)
T TIGR00606 1227 IALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELLG 1277 (1311)
T ss_pred EEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHHh
Confidence 999999999999999999999988732 3789999999986 455544
No 440
>PRK14079 recF recombination protein F; Provisional
Probab=99.23 E-value=1.6e-10 Score=115.35 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 330 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~---------~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|-+++.+.
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~~ 330 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAPP 330 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCCC
Confidence 48999999999999999 899999999999999999999999888643 345655565443
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.19 E-value=1.3e-10 Score=104.97 Aligned_cols=75 Identities=16% Similarity=0.079 Sum_probs=60.8
Q ss_pred CCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCeEEEEecCCCH-------
Q 015591 329 NGLSTEQRK------RLTIAVELVANPSIIFMDEPTTGLD---ARAAAIIMRAVKNVVDTGRTIVCTIHQPSI------- 392 (404)
Q Consensus 329 ~~LSgGqrq------Rl~IAraL~~~p~iLlLDEPtsgLD---~~~~~~i~~~l~~l~~~g~tii~~tH~~~~------- 392 (404)
..+|+|++| +...+.+...+|+++++|||++.+| ...+..+.+.++.+++.|.|+|+++|+...
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~ 149 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGG 149 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCc
Confidence 358999998 4445555667999999999999999 888888889999988789999999998753
Q ss_pred -HHHHhcccccc
Q 015591 393 -DIFEAFDEVKQ 403 (404)
Q Consensus 393 -~i~~~fd~~l~ 403 (404)
.+...+|.++.
T Consensus 150 ~~~~~~aD~ii~ 161 (187)
T cd01124 150 GDVEYLVDGVIR 161 (187)
T ss_pred CceeEeeeEEEE
Confidence 25667787764
No 442
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.16 E-value=9.7e-11 Score=102.35 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTT----------GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSID 393 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPts----------gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~ 393 (404)
.+.++.++...+++...+|+++++||+++ +.|......+.+++....+.+.|+|+++|..+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45666678888999999999999999995 4455555666666655555699999999988644
No 443
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.15 E-value=5.2e-10 Score=100.09 Aligned_cols=62 Identities=18% Similarity=0.353 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
+..|.||-=---+.+.+ .+--+.|||||-++|.+.-+..++..|+++++.|.-+||+||.|=
T Consensus 128 h~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 128 HHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred hhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 45789987665566554 456799999999999999999999999999999999999999873
No 444
>PRK03918 chromosome segregation protein; Provisional
Probab=99.15 E-value=6.4e-11 Score=131.77 Aligned_cols=74 Identities=23% Similarity=0.331 Sum_probs=64.7
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 328 VNGLSTEQRK------RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 328 ~~~LSgGqrq------Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
+..|||||+| |+++|++++.+|+++||||||++||+..+..+.+.|..+.+.+.+||++||++ ++...||++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~~ 863 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADYV 863 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCeE
Confidence 3569999999 55566688899999999999999999999999999999876688999999997 467889998
Q ss_pred cc
Q 015591 402 KQ 403 (404)
Q Consensus 402 l~ 403 (404)
+.
T Consensus 864 ~~ 865 (880)
T PRK03918 864 IR 865 (880)
T ss_pred EE
Confidence 64
No 445
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.14 E-value=9.6e-11 Score=132.09 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=59.4
Q ss_pred CCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 328 VNGLSTEQRKRLTIAVELVA--------NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~--------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
+..|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+.+.|+||++|||..
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~ 1017 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE 1017 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH
Confidence 46799999999999999995 8999999999999999999999999999987899999999954
No 446
>PRK01156 chromosome segregation protein; Provisional
Probab=99.06 E-value=3e-10 Score=126.69 Aligned_cols=74 Identities=20% Similarity=0.332 Sum_probs=63.2
Q ss_pred CCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-CeEEEEecCCCHHHHHhc
Q 015591 328 VNGLSTEQRKRLTI------AVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DT-G-RTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 328 ~~~LSgGqrqRl~I------AraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-~~-g-~tii~~tH~~~~~i~~~f 398 (404)
+..||||||+|++| |++++.+|++++|||||++||+.....+.+.++... .. | .|+|++||++. +...|
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~~ 876 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSVA 876 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHhc
Confidence 45799999999975 589999999999999999999999999999998643 33 3 48999999985 45789
Q ss_pred ccccc
Q 015591 399 DEVKQ 403 (404)
Q Consensus 399 d~~l~ 403 (404)
|+++.
T Consensus 877 d~ii~ 881 (895)
T PRK01156 877 DVAYE 881 (895)
T ss_pred CeEEE
Confidence 98874
No 447
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.06 E-value=1.5e-09 Score=111.07 Aligned_cols=160 Identities=16% Similarity=0.220 Sum_probs=100.0
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC---c--------hhhhcceeEEeecC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK---V--------QETFARVSGYCEQT 272 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~---~--------~~~~~~~~g~v~Q~ 272 (404)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.|.+.|+.- . ...+++.+.++.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD--LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC--eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 4589999 999999999999999999999999999987764 59998865431 1 12356778888864
Q ss_pred CCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC-HHHHHHHHHHHHHhcCCCE
Q 015591 273 DIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS-TEQRKRLTIAVELVANPSI 351 (404)
Q Consensus 273 ~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS-gGqrqRl~IAraL~~~p~i 351 (404)
+.- + -.+....+.+ .+.++.+.+. | .|.++-. .+++ .-|-+| ++.
T Consensus 223 ~~~-~--~~r~~~~~~a-------------~~iAEyfr~~-g----~~Vll~~---Dsltr~A~A~r-----Eis----- 268 (438)
T PRK07721 223 DQP-A--LMRIKGAYTA-------------TAIAEYFRDQ-G----LNVMLMM---DSVTRVAMAQR-----EIG----- 268 (438)
T ss_pred CCC-H--HHHHHHHHHH-------------HHHHHHHHHC-C----CcEEEEE---eChHHHHHHHH-----HHH-----
Confidence 431 1 1111111111 1112222221 2 2222211 1121 111111 111
Q ss_pred EEEeC--CCCCCCHHHHHHHHHHHHHHHh--CCC-----eEEEEecCCCHHHHHhcccccc
Q 015591 352 IFMDE--PTTGLDARAAAIIMRAVKNVVD--TGR-----TIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 352 LlLDE--PtsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+.+.| .|+|+|+.....+.+.++++.. .|. ||++.+||.+. ..+|++..
T Consensus 269 l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~ 326 (438)
T PRK07721 269 LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRG 326 (438)
T ss_pred HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEE
Confidence 12344 4789999999999999999873 575 99999999983 66776653
No 448
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.06 E-value=1.2e-09 Score=107.47 Aligned_cols=127 Identities=20% Similarity=0.204 Sum_probs=78.0
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFS 288 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~ 288 (404)
=+++.++.|+.++|+||+|||||||+++|++..++. .|.+.+....--.......+.++.+..
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~--~~iv~ied~~El~~~~~~~~~l~~~~~--------------- 198 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD--ERIITIEDTREIFLPHPNYVHLFYSKG--------------- 198 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc--ccEEEEcCccccCCCCCCEEEEEecCC---------------
Confidence 367889999999999999999999999999987653 366666432100000001111111100
Q ss_pred hhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 015591 289 AWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 368 (404)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~ 368 (404)
-.+ ....+- .-.++.+|-.+|+++++|||.+ .+
T Consensus 199 --------------------------~~~----------~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 199 --------------------------GQG----------LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred --------------------------CCC----------cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 000 001222 1245667888999999999996 34
Q ss_pred HHHHHHHHHhCCC-eEEEEecCCCHHHHHhccccc
Q 015591 369 IMRAVKNVVDTGR-TIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 369 i~~~l~~l~~~g~-tii~~tH~~~~~i~~~fd~~l 402 (404)
+++.++.+. .|. +++.|+|..+. ....||+.
T Consensus 232 ~~~~l~a~~-~g~~~~i~T~Ha~~~--~~~~~Rl~ 263 (308)
T TIGR02788 232 AFDFIRAVN-TGHPGSITTLHAGSP--EEAFEQLA 263 (308)
T ss_pred HHHHHHHHh-cCCCeEEEEEeCCCH--HHHHHHHH
Confidence 566677665 554 67999999873 44455553
No 449
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.05 E-value=1.2e-09 Score=110.91 Aligned_cols=142 Identities=20% Similarity=0.189 Sum_probs=99.1
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
..+++++ +.+.+|+.++|+|+||+|||||+++|++...++ .|.|.+.|+.. .+|+|
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~--~gvI~~iGerg---------------------~ev~e 199 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD--INVISLVGERG---------------------REVKD 199 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC--eEEEEeCCCCc---------------------ccHHH
Confidence 4588885 999999999999999999999999999987653 46665554321 24555
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh-------cCCCEEEEeC
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV-------ANPSIIFMDE 356 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~-------~~p~iLlLDE 356 (404)
.+.... ..-++.. ...+- ...+-|.|+|+|++.+.+.+ .++-+|++|+
T Consensus 200 ~~~~~l---------------------~~~gl~~--tvvv~--~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs 254 (432)
T PRK06793 200 FIRKEL---------------------GEEGMRK--SVVVV--ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS 254 (432)
T ss_pred HHHHHh---------------------hhcccce--eEEEE--ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 443211 0001110 01111 12468999999999998887 6888999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhc
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~f 398 (404)
||...|+. ++|-..+.+....|.+..+.+|.+ .+++..
T Consensus 255 lTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L~ERa 292 (432)
T PRK06793 255 VTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KLLERS 292 (432)
T ss_pred hHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hHHHHh
Confidence 99999996 556556666554588888888842 466554
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.02 E-value=2.5e-09 Score=98.44 Aligned_cols=54 Identities=20% Similarity=0.433 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+++++|..+|+++++|||. |.+....++ +.+..|..++.|+|.++. .+..|+++
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~ 119 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRII 119 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHH
Confidence 4788999999999999996 665433333 344579999999999873 45667664
No 451
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.02 E-value=3.6e-10 Score=128.79 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 328 VNGLSTEQRKRLTIAVELV----ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~----~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+..||||||||++||++++ .+|+++||||||++||+.+...+.+.|+++++ +.++|+|||++. .+..+|+++
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 3579999999999999984 67799999999999999999999999999864 588999999986 457799875
No 452
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.99 E-value=6e-09 Score=114.84 Aligned_cols=58 Identities=21% Similarity=0.143 Sum_probs=49.1
Q ss_pred HhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH--------HHHhccccc
Q 015591 345 LVANPSIIFMDEPTTGL-DARAAAIIMRAVKNVVDTGRTIVCTIHQPSID--------IFEAFDEVK 402 (404)
Q Consensus 345 L~~~p~iLlLDEPtsgL-D~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~--------i~~~fd~~l 402 (404)
+..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||+++.. +.+.||..+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i 715 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKI 715 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEE
Confidence 35799999999999999 79999999999999988899999999999732 235677554
No 453
>PRK13695 putative NTPase; Provisional
Probab=98.98 E-value=4.7e-10 Score=100.91 Aligned_cols=66 Identities=18% Similarity=0.346 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEP--TTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEP--tsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
.+|++++-+..+++..+.+|+++++||| +.++|. .+++.+.++.+.|+++|+++|+. .+....|++
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i 145 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEI 145 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHHhCCCeEEEEECch--hhHHHHHHH
Confidence 5999999999999999999999999995 444443 35666666666799999999984 344455554
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.95 E-value=8e-09 Score=97.31 Aligned_cols=72 Identities=26% Similarity=0.317 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCCeEEEEecCCCH------HHHHhcc
Q 015591 331 LSTEQRKRLTIAVELVA--NPSIIFMDEPTTG---LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSI------DIFEAFD 399 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~--~p~iLlLDEPtsg---LD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~------~i~~~fd 399 (404)
.+.++++.+...+.++. +|+++++||||+. .|......+++.++.+++.|.|+++++|+... .+..++|
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~D 180 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICD 180 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheE
Confidence 57788999999999997 8999999999964 45555555656677667779999999998753 1455566
Q ss_pred ccc
Q 015591 400 EVK 402 (404)
Q Consensus 400 ~~l 402 (404)
.++
T Consensus 181 gvI 183 (234)
T PRK06067 181 VYL 183 (234)
T ss_pred EEE
Confidence 554
No 455
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.94 E-value=5.5e-09 Score=110.79 Aligned_cols=118 Identities=21% Similarity=0.389 Sum_probs=84.8
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHH------cCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET------IELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~------l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
..+++.|.+.|...+.... .........++++.++ +||.-+ .++. ...|||||.||+-+|..+-++=
T Consensus 427 ~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~-----a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLSRS-----AGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCccccccc-----CCCcChhHHHHHHHHHHhcccc
Confidence 3577888888866554211 1111112223333333 355432 1222 3479999999999999998873
Q ss_pred -C-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 350 -S-IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 350 -~-iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
. +++||||+.||.++.-.++++.|++|++.|-|+|++.||+ +.....|+++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iI 553 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHII 553 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEE
Confidence 3 4699999999999999999999999999999999999997 5688889876
No 456
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.91 E-value=1.5e-09 Score=123.80 Aligned_cols=73 Identities=10% Similarity=0.141 Sum_probs=65.0
Q ss_pred CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVA----NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~----~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||++++||++++. +|+++|||||+++||+..+..+.+.|+++.+ +.++|++||++. ++..+|+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEe
Confidence 34799999999999999985 7899999999999999999999999999864 578999999974 6789999874
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.90 E-value=4.3e-08 Score=82.31 Aligned_cols=59 Identities=27% Similarity=0.345 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCCeEEEEec
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR------AVKNVVDTGRTIVCTIH 388 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~------~l~~l~~~g~tii~~tH 388 (404)
...+++..+..++++-..+|+++++||+..-.+......... ........+..+|+++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 467888888888888888899999999999999988876654 12222335788999998
No 458
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.89 E-value=7.3e-09 Score=106.77 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=93.3
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
.++++.+..+++|++++++||||+||||++..|++.+... +|. +.++++.++. +..++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~--~G~--------------~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR--HGA--------------SKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh--cCC--------------CeEEEEeCCc---cchhHHHH
Confidence 3566777778899999999999999999999999864321 131 2467777743 45789999
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCC-----CEEEEeCCCC
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP-----SIIFMDEPTT 359 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p-----~iLlLDEPts 359 (404)
|.+.+.....+.... ....+......++.+....++...| .|.-. ..+.-..+++.++ .+|+||.++.
T Consensus 305 Lr~~AeilGVpv~~~---~~~~Dl~~aL~~L~d~d~VLIDTaG---r~~~d-~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 305 LRIYGKILGVPVHAV---KDAADLRLALSELRNKHIVLIDTIG---MSQRD-RMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHHhCCCeecc---CCchhHHHHHHhccCCCeEEeCCCC---cChhh-HHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 998776553221111 1112333445567666666665432 22211 1233444455554 6899999887
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q 015591 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIH 388 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~g~tii~~tH 388 (404)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3344455555445666555665
No 459
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.88 E-value=1.2e-09 Score=111.05 Aligned_cols=51 Identities=27% Similarity=0.408 Sum_probs=44.0
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee-EEEECCccCc
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG-EIKIGGYPKV 258 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G-~I~i~G~~~~ 258 (404)
.++|++||+++++||+++|+|||||||||||+ +|+..+. +| +|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~--sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS--EGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC--CCCEEEECCEECC
Confidence 46899999999999999999999999999999 6665553 35 8999998753
No 460
>PRK02224 chromosome segregation protein; Provisional
Probab=98.87 E-value=3.6e-09 Score=117.94 Aligned_cols=74 Identities=27% Similarity=0.364 Sum_probs=63.2
Q ss_pred CCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-eEEEEecCCCHHH
Q 015591 328 VNGLSTEQRK------RLTIAVELVAN-----P-SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGR-TIVCTIHQPSIDI 394 (404)
Q Consensus 328 ~~~LSgGqrq------Rl~IAraL~~~-----p-~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~-tii~~tH~~~~~i 394 (404)
+..||||||+ |+++|++++.+ | +++||||||++||+.....+.+.|+.+...|. +||++||++. +
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 3579999999 89999998863 3 67999999999999999999999999876564 8999999985 4
Q ss_pred HHhcccccc
Q 015591 395 FEAFDEVKQ 403 (404)
Q Consensus 395 ~~~fd~~l~ 403 (404)
...+|+++.
T Consensus 857 ~~~ad~~~~ 865 (880)
T PRK02224 857 VGAADDLVR 865 (880)
T ss_pred HHhcCeeEE
Confidence 567998875
No 461
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.87 E-value=8.4e-09 Score=97.59 Aligned_cols=46 Identities=20% Similarity=0.401 Sum_probs=39.4
Q ss_pred HhcCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q 015591 345 LVANPSIIFMDEPTT------GLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPS 391 (404)
Q Consensus 345 L~~~p~iLlLDEPts------gLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~ 391 (404)
...+|+++++| |++ .+|+.....+++.|++++++ |.|||+++|...
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 35799999999 765 47999999999999998764 999999999873
No 462
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=8.1e-09 Score=103.74 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 330 GLSTEQRKRLTIAVELVA---------NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~---------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|.+. |.++++|+|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 589999999999999999 99999999999999999999999998753 779999999875
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.78 E-value=1.2e-08 Score=92.78 Aligned_cols=85 Identities=19% Similarity=0.136 Sum_probs=61.7
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCC--CCCCCCCHHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTD--IHSPQITVEE 283 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~--~~~~~~Tv~e 283 (404)
..+=+.+.+++|+.++|+||||||||||++.|+|+.++. .|.|.+.+........+..++++.|.+ ...+..+..+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~--~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD--ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 445566778999999999999999999999999987754 589998775322112234566666543 2356689999
Q ss_pred HHHHHhhhh
Q 015591 284 SVIFSAWLR 292 (404)
Q Consensus 284 ~l~~~~~~~ 292 (404)
.+....+.+
T Consensus 92 ~l~~~lR~~ 100 (186)
T cd01130 92 LLRSALRMR 100 (186)
T ss_pred HHHHHhccC
Confidence 998776543
No 464
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.73 E-value=2.8e-07 Score=102.17 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=47.4
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 341 IAVELVANPSIIFMDEPTTGL-DARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 341 IAraL~~~p~iLlLDEPtsgL-D~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~ 731 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS 731 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 678888999999999999999 799999999999999888999999999987
No 465
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.68 E-value=1.5e-07 Score=93.82 Aligned_cols=54 Identities=20% Similarity=0.426 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+++++|-.+|+++++||+. |+++....++. +..|.+++.+.|-.+. ....+|++
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a~tGh~v~~T~Ha~~~--~~~~~Rl~ 240 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALTA----AETGHLVFGTLHTNSA--AQTIERII 240 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----HHcCCcEEEEEcCCCH--HHHHHHHH
Confidence 3677888999999999997 88877654442 4579999999998763 35555553
No 466
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.63 E-value=7.9e-08 Score=107.48 Aligned_cols=75 Identities=23% Similarity=0.360 Sum_probs=64.8
Q ss_pred CCCCCCHHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhc
Q 015591 327 GVNGLSTEQRKRLTIAVELV------AN--PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~------~~--p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~f 398 (404)
.+..|||||+=.++||.+|+ .+ -++|||||||..||+.+...++++|..+...+++|++|||++ ++-+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 45689999998877776654 46 689999999999999999999999999987799999999997 467889
Q ss_pred ccccc
Q 015591 399 DEVKQ 403 (404)
Q Consensus 399 d~~l~ 403 (404)
|.++.
T Consensus 890 ~~~i~ 894 (908)
T COG0419 890 DVRIR 894 (908)
T ss_pred CeEEE
Confidence 88763
No 467
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.62 E-value=6.2e-08 Score=98.66 Aligned_cols=88 Identities=18% Similarity=0.133 Sum_probs=67.8
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-eeeEEEECCccCch---h------hhcceeEEeecC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS-MEGEIKIGGYPKVQ---E------TFARVSGYCEQT 272 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~-~~G~I~i~G~~~~~---~------~~~~~~g~v~Q~ 272 (404)
+..+++++ +.+.+||+++|+|+||+|||||+++|+|...++. .-|.|-.+|.+... . ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 35799999 9999999999999999999999999999876542 12455555543211 1 124468999999
Q ss_pred CCCCCCCCHHHHHHHHhhh
Q 015591 273 DIHSPQITVEESVIFSAWL 291 (404)
Q Consensus 273 ~~~~~~~Tv~e~l~~~~~~ 291 (404)
+..+..+++.+++.+.+..
T Consensus 221 ~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 221 ESPLMRIKATELCHAIATY 239 (434)
T ss_pred CChhhhHHHHHHHHHHHHH
Confidence 8888899999999876654
No 468
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.61 E-value=1.3e-07 Score=104.54 Aligned_cols=137 Identities=20% Similarity=0.232 Sum_probs=82.9
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
.+-+|+++. ..+.++.|.|||.+||||+|+.++-..- ..+.-.|||-.... +++.+
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-------------------lAq~G~~VPa~~a~---i~~~d- 651 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-------------------LAQIGSFVPAESAR---IGIVD- 651 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-------------------HHhcCCceeccceE---ecccC-
Confidence 456777777 6678999999999999999999864210 00111233321110 11111
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCC---CC
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA--NPSIIFMDEP---TT 359 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~--~p~iLlLDEP---ts 359 (404)
++..++|- .|.+. .++|.=+.....++..|-. +++++|+||| |+
T Consensus 652 -----------------------~I~triga---~d~i~-----~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 652 -----------------------RIFTRIGA---SDDLA-----SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred -----------------------eeeeccCc---ccccc-----cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 11111121 12221 2467666666666666654 8999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccc
Q 015591 360 GLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~ 400 (404)
.+|..+ .....++.+.+. |.++|++||.. ++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 999544 445566666655 58999999994 56666553
No 469
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=98.60 E-value=8.2e-08 Score=71.62 Aligned_cols=56 Identities=52% Similarity=0.947 Sum_probs=51.4
Q ss_pred CcchhhhhhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccch
Q 015591 76 NTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTFLKTSGSSRSMI 131 (404)
Q Consensus 76 ~~~~G~~~l~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (404)
+.++|.++|+++|+..+.+|+|+++|++++|.++|++++.+++.++++...++++.
T Consensus 9 ~~tlG~~vL~~rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~k~~aii 64 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLGKSQAII 64 (65)
T ss_pred CCcHHHHHHHHcCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCcC
Confidence 47899999999999999999999999999999999999999999999877666553
No 470
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.58 E-value=1.2e-09 Score=113.65 Aligned_cols=164 Identities=19% Similarity=0.179 Sum_probs=93.6
Q ss_pred eeeee-eeeeeCCcEEEEEcCCCCcHHHHHHHH--hCCCCCCceeeEEEECCccCchhhh---cceeEEeecCCCCCCCC
Q 015591 206 LLYDV-TGSLRPGVLTALMGVSGAGKTTLLDVL--AGRKTTGSMEGEIKIGGYPKVQETF---ARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 206 iL~~v-s~~i~~Ge~~alvG~sGaGKSTLl~~L--~g~~~~~~~~G~I~i~G~~~~~~~~---~~~~g~v~Q~~~~~~~~ 279 (404)
-||.+ .+-+++|.++.|.|++|||||||..-. .|....+. .-+++...... ..+ .+..|+-.+....-
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge--~~lyvs~eE~~-~~l~~~~~~~G~~~~~~~~~--- 82 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE--PGVFVTFEESP-QDIIKNARSFGWDLQKLVDE--- 82 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC--CEEEEEEecCH-HHHHHHHHHcCCCHHHHhhc---
Confidence 45564 567899999999999999999999866 34333221 34455433211 112 12234332211000
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCC
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIA--VELVANPSIIFMDEP 357 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IA--raL~~~p~iLlLDEP 357 (404)
+++.+ ... .. ......+++.+++.+..+... ..+|+|++||+.|+ .++...|+..
T Consensus 83 ---g~l~~-----~~~--~~---~~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 83 ---GKLFI-----LDA--SP---DPEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ---CceEE-----Eec--Cc---hhccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 00000 000 00 000111223334444444443 25899999999999 5666665433
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH-------H-HHhcccccc
Q 015591 358 TTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSID-------I-FEAFDEVKQ 403 (404)
Q Consensus 358 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~-------i-~~~fd~~l~ 403 (404)
...++.+.++++.+++.|.|+|+++|+++.. + ..++|.++.
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~ 188 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVI 188 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEE
Confidence 4677888999999888899999999987521 1 345677663
No 471
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.51 E-value=1.6e-07 Score=108.58 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 329 NGLSTEQRKRLT----IAVE--------LVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 329 ~~LSgGqrqRl~----IAra--------L~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
.+||||||||+. +|++ +..+|++++|||||+|||+.+...+++++.++ |.++|++||.+
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 579999999996 5655 45799999999999999999999999999876 78999999973
No 472
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.50 E-value=3.9e-07 Score=93.07 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=61.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC---
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG--- 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G--- 254 (404)
.++.++++..+.. +..+++.++ .+.+||.++|+|+||||||||+++|+++..++ .|.|.+.|
T Consensus 139 ~~~r~~v~~~l~T------------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd--~gvv~liGerg 203 (450)
T PRK06002 139 AMTRARVETGLRT------------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD--TVVIALVGERG 203 (450)
T ss_pred CeEeecceEEcCC------------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--eeeeeecccCC
Confidence 4677777776532 356888886 89999999999999999999999999987764 58888864
Q ss_pred ccCch-------hhhcceeEEeecCCC
Q 015591 255 YPKVQ-------ETFARVSGYCEQTDI 274 (404)
Q Consensus 255 ~~~~~-------~~~~~~~g~v~Q~~~ 274 (404)
.++.. ...++.+++|+|.+.
T Consensus 204 rev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 204 REVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred ccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 33211 113467899999764
No 473
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.50 E-value=1.4e-07 Score=86.55 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=60.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN 298 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~ 298 (404)
+++|.||||||||||.+.|++.... |.+.+ +.+++.+ ...+..+...........+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~----~~~~v----------------~~~D~~~-~~~~~~~~~~~~~~~~~~~--- 56 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN----PKVVI----------------ISQDSYY-KDLSHEELEERKNNNYDHP--- 56 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC----CCeEE----------------EEecccc-cccccccHHHhccCCCCCC---
Confidence 5899999999999999999986521 22222 2222211 1112222111111000000
Q ss_pred hhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 299 SKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 299 ~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
.....+...+.++.+...+..+.. ....|.|++++..+ .+.+|+++|+|+|+.+.++.
T Consensus 57 ~~~~~~~~~~~l~~l~~~~~~~~p-----~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 57 DAFDFDLLISHLQDLKNGKSVEIP-----VYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred CcccHHHHHHHHHHHHCCCCEecc-----ccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 011112223444444433322222 23578888776555 56789999999999999863
No 474
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.47 E-value=4.7e-08 Score=91.61 Aligned_cols=46 Identities=28% Similarity=0.400 Sum_probs=33.0
Q ss_pred eeeee-eeeeeCCcEEEEEcCCCCcHHHHHHHHh--CCCCCCceeeEEEECC
Q 015591 206 LLYDV-TGSLRPGVLTALMGVSGAGKTTLLDVLA--GRKTTGSMEGEIKIGG 254 (404)
Q Consensus 206 iL~~v-s~~i~~Ge~~alvG~sGaGKSTLl~~L~--g~~~~~~~~G~I~i~G 254 (404)
-||.+ ..-+++|+++.|.|++|+|||||...++ +. ..+ ++.+++..
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g--~~~~~is~ 56 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDG--DPVIYVTT 56 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcC--CeEEEEEc
Confidence 45553 5678999999999999999999988655 33 222 24456654
No 475
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.47 E-value=5.3e-06 Score=91.70 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=43.5
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 344 ELVANPSIIFMDEPTTGLD-ARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 344 aL~~~p~iLlLDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||+++
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3557899999999999999 88888999999999888999999999986
No 476
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.45 E-value=1.5e-07 Score=85.09 Aligned_cols=68 Identities=22% Similarity=0.198 Sum_probs=47.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh-hhc-ceeEEeecCCCCCCCCCHHHHHHHHh
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE-TFA-RVSGYCEQTDIHSPQITVEESVIFSA 289 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-~~~-~~~g~v~Q~~~~~~~~Tv~e~l~~~~ 289 (404)
+||+++|+|+||||||||+++|+++..+ +.++|.+.... ..+ ...|+.+|+...++..++.+++.+..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSL 71 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence 6999999999999999999999997653 46777654321 111 23466666655556677777776654
No 477
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.35 E-value=1e-06 Score=100.93 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=36.3
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
=+++..+++++++|+|++|+|||||++.+++.... ...|.+++++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~ 243 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDR 243 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeec
Confidence 34667788999999999999999999999775433 2368888875
No 478
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.34 E-value=1e-05 Score=89.60 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=42.3
Q ss_pred HhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 345 LVANPSIIFMDEPTTGLD-ARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 345 L~~~p~iLlLDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||+++
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 345899999999999999 77888999999999888999999999986
No 479
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.32 E-value=3.5e-06 Score=71.33 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCeEEEEecCCC-----HHHHHhcccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-----TGRTIVCTIHQPS-----IDIFEAFDEV 401 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tii~~tH~~~-----~~i~~~fd~~ 401 (404)
++..........++.++++||.-.. ++.....+.+.+..... .+.++|++++... ..+...||..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~ 146 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIR 146 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccE
Confidence 3444455566778999999998654 56667778888877643 4778999998543 3455555533
No 480
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=98.32 E-value=1.8e-07 Score=85.14 Aligned_cols=62 Identities=27% Similarity=0.607 Sum_probs=59.4
Q ss_pred eeeecccCCHHHHHHHHHHHHHHHHHHhcccccCCCccchhhhhhccChHHHHHHHHHhhhc
Q 015591 3 RFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEF 64 (404)
Q Consensus 3 r~~~~~~~~~~~a~~~~~~~~~~~~~~~Gf~i~~~~~~~w~~W~~~i~p~~y~~~al~~nef 64 (404)
.++++++++...|+.+.+++..++.+++|.++|.+.+|+|++|+.|+||+.|+.|++..++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 149 LLLAALFPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred cccccchhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 46889999999999999999999999999999999999999999999999999999999887
No 481
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.29 E-value=8.5e-07 Score=65.84 Aligned_cols=35 Identities=34% Similarity=0.492 Sum_probs=28.0
Q ss_pred eeeeeeeeeC-CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 207 LYDVTGSLRP-GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 207 L~~vs~~i~~-Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+++.++.+.+ |.++.|.|+||||||||++.+.=..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455667775 5799999999999999999987543
No 482
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.27 E-value=4.5e-06 Score=80.16 Aligned_cols=36 Identities=39% Similarity=0.468 Sum_probs=32.2
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.+.|+++..-+++|+++.|.|++|+|||||+..++.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457888888999999999999999999999988765
No 483
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.22 E-value=2.6e-05 Score=80.07 Aligned_cols=152 Identities=17% Similarity=0.216 Sum_probs=88.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc---Cc--------hhhhcceeEEeec
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP---KV--------QETFARVSGYCEQ 271 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~---~~--------~~~~~~~~g~v~Q 271 (404)
+..+++++ +.+.+||.++|+|+||+|||||+++|++...++ .|.+...|.. .. ...+++.+-++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~--~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD--VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC--EEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 35699999 999999999999999999999999999987654 3665555542 11 0112334444444
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC-HHHHHHHHHHHHHhcCCC
Q 015591 272 TDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS-TEQRKRLTIAVELVANPS 350 (404)
Q Consensus 272 ~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS-gGqrqRl~IAraL~~~p~ 350 (404)
.+. +..+-..-+ . .....++.+.+. |. |.++=. .+|+ --|-+| .|+
T Consensus 227 ~d~-----~p~~r~~~~-~----------~a~t~AE~frd~-G~----~Vll~~---DslTr~A~A~R-Eis-------- 273 (440)
T TIGR01026 227 SDQ-----SPLLRLKGA-Y----------VATAIAEYFRDQ-GK----DVLLLM---DSVTRFAMAQR-EIG-------- 273 (440)
T ss_pred CCC-----CHHHHHHHH-H----------HHHHHHHHHHHC-CC----CEEEEE---eChHHHHHHHH-HHH--------
Confidence 332 111111100 0 001122333321 21 222110 1122 112222 111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------eEEEEecCCC
Q 015591 351 IIFMDEP--TTGLDARAAAIIMRAVKNVVDTGR-------TIVCTIHQPS 391 (404)
Q Consensus 351 iLlLDEP--tsgLD~~~~~~i~~~l~~l~~~g~-------tii~~tH~~~ 391 (404)
+.+.|| +.|+|+.....+.+++.+....+. ||++.+||.+
T Consensus 274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~ 322 (440)
T TIGR01026 274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN 322 (440)
T ss_pred -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC
Confidence 234564 559999999999999999876667 8888999875
No 484
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.22 E-value=2.4e-06 Score=85.93 Aligned_cols=53 Identities=26% Similarity=0.280 Sum_probs=45.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeee-----------eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLY-----------DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
.+.|+||++.|+. ++.+|+ |+++.+.+||.++|+||+|+|||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~------------er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPN------------ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCC------------ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 5999999998853 234675 9999999999999999999999999999997543
No 485
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.21 E-value=2.4e-05 Score=70.82 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=35.5
Q ss_pred CCCHHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 015591 330 GLSTEQRKRLT--IAVELVA-NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379 (404)
Q Consensus 330 ~LSgGqrqRl~--IAraL~~-~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~ 379 (404)
.+++||+|++. +++.+-. +++++ |||++|......+.+.|.++.++
T Consensus 147 l~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 147 KLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 47999999987 5555543 34443 99999999999999999887654
No 486
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.20 E-value=6.5e-05 Score=71.07 Aligned_cols=46 Identities=15% Similarity=0.325 Sum_probs=34.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-CCCeEEEEecCCC
Q 015591 346 VANPSIIFMDEPTTGLDARAAAIIMR-AVKNVVD-TGRTIVCTIHQPS 391 (404)
Q Consensus 346 ~~~p~iLlLDEPtsgLD~~~~~~i~~-~l~~l~~-~g~tii~~tH~~~ 391 (404)
+.+..++|+||...|=++.....+.. .++.+.+ .+..+|++||..+
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 34567899999999999998887764 4455666 4889999999975
No 487
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.17 E-value=4.5e-06 Score=66.97 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=35.8
Q ss_pred CCCCHHHHH-HHHHHHH------Hhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 015591 329 NGLSTEQRK-RLTIAVE------LVA------NPSIIFMDEPTTGLDARAAAIIMRAVKN 375 (404)
Q Consensus 329 ~~LSgGqrq-Rl~IAra------L~~------~p~iLlLDEPtsgLD~~~~~~i~~~l~~ 375 (404)
.++|||||| .+.+|.+ +-. .|.+++||||+++||+.....+++++++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 369999994 4444433 323 3689999999999999999999999874
No 488
>PRK08149 ATP synthase SpaL; Validated
Probab=98.17 E-value=4.8e-06 Score=84.87 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=53.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-eeeEEEECCccCch---h----hhcceeEEeecC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS-MEGEIKIGGYPKVQ---E----TFARVSGYCEQT 272 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~-~~G~I~i~G~~~~~---~----~~~~~~g~v~Q~ 272 (404)
+..+++++ +.+.+||.++|+|+||+|||||+++|++...++. +-|.|-.+|.+... . ...+++++|+..
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 35699999 9999999999999999999999999999766542 23888888886421 1 122456777654
No 489
>PRK01889 GTPase RsgA; Reviewed
Probab=98.16 E-value=1.7e-06 Score=86.78 Aligned_cols=79 Identities=22% Similarity=0.204 Sum_probs=57.5
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESV 285 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l 285 (404)
-++.+.-.+++|++++|+|+||+|||||++.|+|...+ ..|+|.+++.........+.+.+++|...+++ .....++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~--~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~D-tpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ--KTGAVREDDSKGRHTTTHRELHPLPSGGLLID-TPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccc--ceeeEEECCCCCcchhhhccEEEecCCCeecC-CCchhhh
Confidence 35566667889999999999999999999999997765 45999998754222334456788888665554 3444444
Q ss_pred HH
Q 015591 286 IF 287 (404)
Q Consensus 286 ~~ 287 (404)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 44
No 490
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.13 E-value=8.7e-06 Score=83.31 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=41.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
...+++++ +.+.+||.++|+|+||+|||||+++|+|..+.. ..|.|.+.|
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~-~~~vi~liG 200 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA-DVNVIALIG 200 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC-CceEEEEEC
Confidence 35689998 999999999999999999999999999976321 236777655
No 491
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.12 E-value=1.1e-06 Score=81.32 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=25.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
++|++++|+||||||||||++.|+++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6799999999999999999999999755
No 492
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.10 E-value=4.1e-06 Score=78.76 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=51.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeE----EEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhh
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGE----IKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAW 290 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~----I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~ 290 (404)
.+..+++|.||||||||||++.|++...+. .|. |.+++..... ...+..+++.+.. .....++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~--~g~~~v~i~~D~~~~~~-~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD--GELPAIQVPMDGFHLDN-AVLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc--cCCceEEEecccccCCH-HHHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 457799999999999999999999977653 366 5555543322 2233457776533 3456788887777655
Q ss_pred hhc
Q 015591 291 LRL 293 (404)
Q Consensus 291 ~~~ 293 (404)
++.
T Consensus 107 l~~ 109 (229)
T PRK09270 107 LRA 109 (229)
T ss_pred HHc
Confidence 553
No 493
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.09 E-value=4.1e-06 Score=68.97 Aligned_cols=54 Identities=26% Similarity=0.375 Sum_probs=44.3
Q ss_pred Ccchhhhhhh-ccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccch
Q 015591 76 NTTIGQEILE-SRGLNFDGYLFWISLGALFGFALLLNIGFTLALTFLKTSGSSRSMI 131 (404)
Q Consensus 76 ~~~~G~~~l~-~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (404)
..+.|++||+ +++|. ..|+|||+||+++|+++|.++..++.++.+.......+.
T Consensus 29 ~~V~G~~YL~~~y~y~--~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~~~l 83 (103)
T PF06422_consen 29 TYVSGDDYLEESYGYS--YSHRWRNFGILIAFWIFFIVLTLLATEFIKFEKSGGEVL 83 (103)
T ss_pred cEEeHHHHHhhhcccc--ccchhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCccEE
Confidence 5678999998 56665 468899999999999999999999999988765544443
No 494
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.07 E-value=2.5e-05 Score=78.37 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
++|.+++|.||+||||||+|++|++...
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5889999999999999999999998653
No 495
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.07 E-value=3.8e-06 Score=76.34 Aligned_cols=51 Identities=31% Similarity=0.368 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQT 272 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~ 272 (404)
|++++|+||||||||||++.|++...+ .+.+++..+.. ...+..+++++|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT-----QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC-----eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999986542 45665554321 1122345566553
No 496
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.05 E-value=3.6e-06 Score=81.83 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=49.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEE---CCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhc
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI---GGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL 293 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i---~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~ 293 (404)
.++||.|+||||||||+++|.++....+.+|.|.+ ||.-.... .++..++. |...+...+++.+.+.+-..++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~-~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk~ 139 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQ-VLKERNLM-KKKGFPESYDMHRLVKFLSDLKS 139 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHH-HHHHcCCc-cccCCChhccHHHHHHHHHHHHC
Confidence 59999999999999999999987642222467655 44333222 22334544 55566778899888888766653
No 497
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.03 E-value=1.7e-05 Score=85.05 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=67.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCc------eeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHh
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGS------MEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSA 289 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~------~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~ 289 (404)
..+.++|+||||+|||||++++.+...... ..+-+.++|..... ..+. + .+-.++.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-d~~~----------------i-~~~llg~ 235 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-DPRE----------------V-TNPLLGS 235 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-CHHH----------------H-hHHhcCC
Confidence 345799999999999999999988643211 11335555533210 0000 0 0111110
Q ss_pred hhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q 015591 290 WLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369 (404)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i 369 (404)
. .....+.+.+.++..++.+..+..+ ..+||| +||||| +..||+..+..+
T Consensus 236 -------~-~~~~~~~a~~~l~~~gl~~~~~g~v-----~~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 236 -------V-HDPIYQGARRDLAETGVPEPKTGLV-----TDAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred -------c-cHHHHHHHHHHHHHcCCCchhcCch-----hhcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 0 0011122344566677766555543 357888 999999 799999999999
Q ss_pred HHHHHH
Q 015591 370 MRAVKN 375 (404)
Q Consensus 370 ~~~l~~ 375 (404)
.+.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 999875
No 498
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.01 E-value=1.9e-05 Score=68.58 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 015591 330 GLSTEQRKRLTIAVEL-----VANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL-----~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l 376 (404)
.++.+++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 122 KLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred cCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 4688888877666552 3345655 99999999999999888764
No 499
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.00 E-value=9.8e-06 Score=79.96 Aligned_cols=49 Identities=27% Similarity=0.338 Sum_probs=42.4
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
..+++++ +.+.+||.++|+|+||+|||||+++|+|...++ .|.+..-|.
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~--~~vi~~iGe 105 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD--VNVIALIGE 105 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC--EEEEEEEec
Confidence 5699999 999999999999999999999999999987764 366666553
No 500
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.00 E-value=5.2e-06 Score=81.92 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=51.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---------hhhcceeEEeecCCCCCCCCCHHHHH
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---------ETFARVSGYCEQTDIHSPQITVEESV 285 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---------~~~~~~~g~v~Q~~~~~~~~Tv~e~l 285 (404)
++|++++++||||+||||++..|++..... .++|.+-+.+... ...++.+.+++|.....|..++.+++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 579999999999999999999999976542 3788887665311 11234578888865555656677776
Q ss_pred HHH
Q 015591 286 IFS 288 (404)
Q Consensus 286 ~~~ 288 (404)
...
T Consensus 190 ~~~ 192 (318)
T PRK10416 190 QAA 192 (318)
T ss_pred HHH
Confidence 654
Done!