Query 015591
Match_columns 404
No_of_seqs 439 out of 4213
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 15:16:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 100.0 1.3E-48 4.5E-53 367.5 23.6 207 179-403 2-217 (235)
2 3tui_C Methionine import ATP-b 100.0 2.4E-48 8.3E-53 385.5 23.8 206 178-403 24-236 (366)
3 2pcj_A ABC transporter, lipopr 100.0 4.9E-48 1.7E-52 361.0 24.4 201 178-403 4-211 (224)
4 3gfo_A Cobalt import ATP-bindi 100.0 2.8E-48 9.5E-53 373.1 22.7 203 178-403 7-216 (275)
5 2olj_A Amino acid ABC transpor 100.0 6.7E-48 2.3E-52 368.2 24.8 202 178-403 24-231 (263)
6 1b0u_A Histidine permease; ABC 100.0 6.1E-48 2.1E-52 368.5 23.7 201 179-403 7-225 (262)
7 3fvq_A Fe(3+) IONS import ATP- 100.0 3.8E-48 1.3E-52 383.8 22.7 203 178-404 4-212 (359)
8 3rlf_A Maltose/maltodextrin im 100.0 5.9E-48 2E-52 384.9 24.2 202 179-404 4-207 (381)
9 1g6h_A High-affinity branched- 100.0 6E-48 2E-52 367.6 22.2 205 178-403 7-225 (257)
10 1vpl_A ABC transporter, ATP-bi 100.0 1.6E-47 5.4E-52 364.4 24.1 202 178-403 15-218 (256)
11 1ji0_A ABC transporter; ATP bi 100.0 2.3E-47 7.7E-52 360.1 22.9 201 178-403 6-211 (240)
12 4g1u_C Hemin import ATP-bindin 100.0 3.5E-47 1.2E-51 363.9 23.4 200 178-403 11-220 (266)
13 2it1_A 362AA long hypothetical 100.0 6.1E-47 2.1E-51 376.2 24.1 201 179-403 4-206 (362)
14 2yyz_A Sugar ABC transporter, 100.0 5.1E-47 1.7E-51 376.4 22.7 201 179-403 4-206 (359)
15 1g29_1 MALK, maltose transport 100.0 8.8E-47 3E-51 376.8 24.2 201 179-403 4-212 (372)
16 1sgw_A Putative ABC transporte 100.0 4.3E-47 1.5E-51 352.1 19.8 196 178-403 10-205 (214)
17 1z47_A CYSA, putative ABC-tran 100.0 5.4E-47 1.8E-51 375.5 21.8 204 177-403 13-218 (355)
18 1oxx_K GLCV, glucose, ABC tran 100.0 4.4E-47 1.5E-51 376.6 20.5 201 179-403 4-213 (353)
19 1v43_A Sugar-binding transport 100.0 9.1E-47 3.1E-51 376.3 21.7 201 179-403 12-214 (372)
20 2yz2_A Putative ABC transporte 100.0 1.6E-46 5.3E-51 359.6 22.1 202 179-403 3-210 (266)
21 3d31_A Sulfate/molybdate ABC t 100.0 1.7E-46 5.8E-51 371.4 21.9 197 179-403 2-200 (348)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 2.4E-46 8.2E-51 355.1 20.9 204 179-403 4-216 (250)
23 3nh6_A ATP-binding cassette SU 100.0 1.5E-46 5.1E-51 365.8 19.0 200 177-404 52-261 (306)
24 2ihy_A ABC transporter, ATP-bi 100.0 2.5E-46 8.6E-51 360.3 19.5 205 178-403 21-235 (279)
25 2onk_A Molybdate/tungstate ABC 100.0 4E-46 1.4E-50 351.5 19.7 196 179-403 2-199 (240)
26 2nq2_C Hypothetical ABC transp 100.0 3.1E-45 1.1E-49 348.1 24.3 196 178-403 4-201 (253)
27 2zu0_C Probable ATP-dependent 100.0 2.4E-45 8.1E-50 351.5 23.5 208 178-403 20-237 (267)
28 2ixe_A Antigen peptide transpo 100.0 1.1E-45 3.7E-50 354.6 17.5 206 178-403 16-228 (271)
29 2qi9_C Vitamin B12 import ATP- 100.0 7.7E-45 2.6E-49 344.5 20.6 191 179-403 5-205 (249)
30 2ff7_A Alpha-hemolysin translo 100.0 4.3E-45 1.5E-49 345.9 18.5 200 177-403 6-215 (247)
31 1mv5_A LMRA, multidrug resista 100.0 1.1E-44 3.6E-49 342.4 15.0 198 179-403 2-209 (243)
32 3qf4_A ABC transporter, ATP-bi 100.0 5.5E-44 1.9E-48 377.1 20.5 207 177-403 340-549 (587)
33 4a82_A Cystic fibrosis transme 100.0 3.9E-44 1.3E-48 377.7 18.1 200 177-403 338-547 (578)
34 2pjz_A Hypothetical protein ST 100.0 1.7E-43 5.9E-48 337.7 19.4 194 179-403 2-198 (263)
35 2ghi_A Transport protein; mult 100.0 8E-44 2.7E-48 339.7 16.7 199 178-403 17-225 (260)
36 2yl4_A ATP-binding cassette SU 100.0 3E-43 1E-47 372.2 22.0 203 178-403 340-553 (595)
37 3b5x_A Lipid A export ATP-bind 100.0 3.7E-43 1.3E-47 370.6 22.3 201 177-403 340-550 (582)
38 3b60_A Lipid A export ATP-bind 100.0 4.3E-43 1.5E-47 370.1 21.5 200 178-403 341-550 (582)
39 3qf4_B Uncharacterized ABC tra 100.0 8.3E-44 2.8E-48 376.6 14.9 206 177-403 353-561 (598)
40 4f4c_A Multidrug resistance pr 100.0 6.3E-43 2.2E-47 397.9 19.6 209 177-404 414-625 (1321)
41 2pze_A Cystic fibrosis transme 100.0 3.4E-42 1.1E-46 322.5 18.2 188 178-403 6-201 (229)
42 3gd7_A Fusion complex of cysti 100.0 7.3E-43 2.5E-47 350.1 13.9 199 177-404 18-226 (390)
43 2cbz_A Multidrug resistance-as 100.0 4.3E-42 1.5E-46 323.4 17.9 190 179-403 4-200 (237)
44 4f4c_A Multidrug resistance pr 100.0 2.8E-42 9.7E-47 392.5 15.3 204 177-404 1075-1288(1321)
45 3g5u_A MCG1178, multidrug resi 100.0 9E-41 3.1E-45 379.3 19.7 209 177-404 386-597 (1284)
46 2bbs_A Cystic fibrosis transme 100.0 8.1E-40 2.8E-44 316.5 14.4 183 178-403 40-230 (290)
47 3g5u_A MCG1178, multidrug resi 100.0 1.3E-39 4.6E-44 369.7 18.4 209 177-404 1029-1242(1284)
48 3ozx_A RNAse L inhibitor; ATP 100.0 4.4E-37 1.5E-41 320.6 19.3 191 177-404 268-459 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 6.3E-37 2.2E-41 323.4 20.2 189 177-404 356-545 (607)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 7.5E-37 2.6E-41 319.2 18.3 189 177-404 286-475 (538)
51 1yqt_A RNAse L inhibitor; ATP- 100.0 2E-36 6.8E-41 316.0 12.0 178 205-403 36-230 (538)
52 3bk7_A ABC transporter ATP-bin 100.0 2E-36 6.7E-41 319.6 11.9 178 205-403 106-300 (607)
53 3j16_B RLI1P; ribosome recycli 100.0 6.2E-35 2.1E-39 307.9 18.2 176 204-404 360-541 (608)
54 3ux8_A Excinuclease ABC, A sub 100.0 8.2E-35 2.8E-39 311.6 13.7 192 204-403 31-275 (670)
55 2iw3_A Elongation factor 3A; a 100.0 1.8E-33 6.2E-38 307.6 18.8 181 178-403 435-617 (986)
56 2iw3_A Elongation factor 3A; a 100.0 1.8E-33 6.2E-38 307.6 15.2 197 178-404 671-971 (986)
57 3j16_B RLI1P; ribosome recycli 100.0 3.1E-33 1E-37 295.0 12.3 180 205-403 92-293 (608)
58 3ozx_A RNAse L inhibitor; ATP 100.0 3.1E-33 1.1E-37 291.6 10.0 168 214-403 22-209 (538)
59 3ux8_A Excinuclease ABC, A sub 100.0 3.7E-32 1.3E-36 291.0 16.2 181 204-403 335-617 (670)
60 2vf7_A UVRA2, excinuclease ABC 100.0 1.1E-29 3.9E-34 275.1 18.0 94 304-404 708-805 (842)
61 2r6f_A Excinuclease ABC subuni 100.0 2.2E-29 7.5E-34 273.7 17.5 182 206-403 639-919 (972)
62 3pih_A Uvrabc system protein A 100.0 8.5E-29 2.9E-33 270.3 19.9 184 205-403 598-879 (916)
63 4aby_A DNA repair protein RECN 100.0 2.2E-29 7.6E-34 254.1 11.9 194 205-403 49-367 (415)
64 2ygr_A Uvrabc system protein A 100.0 1.2E-28 4.1E-33 268.8 16.7 182 206-403 657-937 (993)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.3E-31 4.6E-36 274.2 -10.5 168 208-400 129-313 (460)
66 3b85_A Phosphate starvation-in 99.9 5.7E-31 2E-35 242.8 -11.5 148 202-391 11-159 (208)
67 4gp7_A Metallophosphoesterase; 99.9 6.3E-28 2.2E-32 215.2 2.6 143 209-391 1-160 (171)
68 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.8E-25 6.2E-30 222.8 15.9 73 329-403 278-356 (365)
69 1e69_A Chromosome segregation 99.9 1.5E-25 5E-30 219.6 12.7 70 329-401 218-291 (322)
70 1tq4_A IIGP1, interferon-induc 99.9 1.7E-28 5.9E-33 247.4 -8.9 171 204-402 36-248 (413)
71 1znw_A Guanylate kinase, GMP k 99.9 5.5E-28 1.9E-32 221.8 -14.3 179 203-403 8-200 (207)
72 1ye8_A Protein THEP1, hypothet 99.9 2.5E-25 8.6E-30 200.1 2.5 139 219-400 2-152 (178)
73 1z6g_A Guanylate kinase; struc 99.9 2.9E-27 9.9E-32 219.2 -17.3 179 204-402 10-205 (218)
74 3b9q_A Chloroplast SRP recepto 99.9 1.8E-24 6.1E-29 210.2 1.5 155 207-390 90-257 (302)
75 3sop_A Neuronal-specific septi 99.9 2.8E-25 9.5E-30 212.6 -6.2 148 219-391 4-151 (270)
76 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.8E-23 6.1E-28 205.6 4.6 127 205-403 159-286 (330)
77 2og2_A Putative signal recogni 99.9 1.2E-23 4E-28 208.6 1.8 153 208-389 148-313 (359)
78 2v9p_A Replication protein E1; 99.9 8.2E-26 2.8E-30 219.3 -16.0 146 179-401 102-248 (305)
79 2dpy_A FLII, flagellum-specifi 99.9 1.7E-23 5.9E-28 212.9 -1.5 162 203-402 144-326 (438)
80 3qkt_A DNA double-strand break 99.8 8.3E-21 2.8E-25 187.1 16.2 73 329-403 247-325 (339)
81 3aez_A Pantothenate kinase; tr 99.8 1.8E-24 6.1E-29 211.1 -10.9 123 214-363 87-209 (312)
82 1cr0_A DNA primase/helicase; R 99.8 3.8E-22 1.3E-26 192.5 3.7 179 204-403 22-231 (296)
83 2vf7_A UVRA2, excinuclease ABC 99.8 8.3E-20 2.8E-24 198.1 17.0 92 304-403 358-452 (842)
84 2jeo_A Uridine-cytidine kinase 99.8 4.3E-22 1.5E-26 187.2 -0.9 156 202-390 10-165 (245)
85 4ad8_A DNA repair protein RECN 99.8 1.3E-20 4.5E-25 195.8 10.1 72 329-403 395-469 (517)
86 2eyu_A Twitching motility prot 99.8 8.4E-21 2.9E-25 180.6 6.5 130 205-403 15-144 (261)
87 2o8b_B DNA mismatch repair pro 99.8 8.2E-21 2.8E-25 210.4 2.9 146 203-402 768-923 (1022)
88 2ehv_A Hypothetical protein PH 99.8 3.7E-21 1.3E-25 179.6 -0.1 167 207-403 19-204 (251)
89 1tf7_A KAIC; homohexamer, hexa 99.8 3.8E-21 1.3E-25 200.2 -0.7 164 203-403 24-206 (525)
90 1tf7_A KAIC; homohexamer, hexa 99.8 5.9E-20 2E-24 191.2 8.2 151 211-403 275-439 (525)
91 2o5v_A DNA replication and rep 99.8 2.7E-19 9.2E-24 177.5 10.0 66 330-403 265-339 (359)
92 3thx_B DNA mismatch repair pro 99.8 1.3E-19 4.3E-24 198.4 7.2 144 203-400 659-804 (918)
93 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 3.9E-19 1.3E-23 154.9 7.7 73 329-403 56-134 (148)
94 4a74_A DNA repair and recombin 99.8 3.2E-20 1.1E-24 171.0 0.9 148 212-403 20-196 (231)
95 2obl_A ESCN; ATPase, hydrolase 99.8 5.7E-20 1.9E-24 181.7 2.5 172 179-402 46-237 (347)
96 3thx_A DNA mismatch repair pro 99.8 2.3E-19 7.8E-24 196.8 7.2 136 203-402 648-795 (934)
97 3asz_A Uridine kinase; cytidin 99.8 7.9E-22 2.7E-26 180.4 -10.5 146 214-391 3-162 (211)
98 1rj9_A FTSY, signal recognitio 99.8 7.2E-20 2.5E-24 177.9 2.2 147 216-391 101-259 (304)
99 1ewq_A DNA mismatch repair pro 99.8 1.2E-19 3.9E-24 195.8 3.4 128 203-391 565-699 (765)
100 1w1w_A Structural maintenance 99.8 2.5E-18 8.5E-23 174.6 13.0 72 330-403 333-408 (430)
101 3pih_A Uvrabc system protein A 99.8 4.8E-19 1.7E-23 193.6 7.7 145 234-403 385-537 (916)
102 2qnr_A Septin-2, protein NEDD5 99.8 3E-20 1E-24 180.3 -2.1 158 201-391 8-168 (301)
103 1nlf_A Regulatory protein REPA 99.7 2.4E-17 8.4E-22 157.5 11.9 151 213-391 26-182 (279)
104 1pzn_A RAD51, DNA repair and r 99.7 7.3E-19 2.5E-23 174.0 0.3 143 206-391 119-287 (349)
105 1pui_A ENGB, probable GTP-bind 99.7 2.8E-19 9.5E-24 162.5 -2.7 178 179-382 4-202 (210)
106 1wb9_A DNA mismatch repair pro 99.7 3.7E-18 1.3E-22 185.1 5.4 144 203-401 594-739 (800)
107 2r6f_A Excinuclease ABC subuni 99.7 2.8E-17 9.5E-22 179.0 12.1 119 277-403 450-577 (972)
108 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.9E-18 6.7E-23 158.8 2.0 164 204-403 9-188 (235)
109 3jvv_A Twitching mobility prot 99.7 5.1E-18 1.7E-22 168.2 5.0 124 213-403 119-242 (356)
110 3szr_A Interferon-induced GTP- 99.7 3.1E-19 1.1E-23 188.7 -5.3 164 178-391 10-197 (608)
111 2ygr_A Uvrabc system protein A 99.7 5.1E-17 1.7E-21 177.5 10.9 121 275-403 465-594 (993)
112 2i3b_A HCR-ntpase, human cance 99.7 2E-19 6.9E-24 163.0 -7.7 138 217-391 1-150 (189)
113 2qag_C Septin-7; cell cycle, c 99.7 2.6E-18 8.7E-23 173.6 -1.6 164 178-391 11-178 (418)
114 2qag_B Septin-6, protein NEDD5 99.6 2.4E-17 8.3E-22 166.2 1.0 176 202-389 26-218 (427)
115 1s96_A Guanylate kinase, GMP k 99.6 1.3E-17 4.3E-22 154.6 -2.2 129 210-391 9-141 (219)
116 3kta_B Chromosome segregation 99.6 9.5E-16 3.2E-20 136.9 8.9 72 329-403 63-138 (173)
117 2cvh_A DNA repair and recombin 99.6 5.6E-16 1.9E-20 141.5 7.5 150 205-403 7-181 (220)
118 1zp6_A Hypothetical protein AT 99.6 6.6E-18 2.3E-22 151.6 -7.7 152 213-388 5-159 (191)
119 2ewv_A Twitching motility prot 99.6 5.6E-16 1.9E-20 154.5 5.2 129 205-402 126-254 (372)
120 1nij_A Hypothetical protein YJ 99.6 6.4E-19 2.2E-23 172.2 -17.7 163 218-399 5-197 (318)
121 1lw7_A Transcriptional regulat 99.6 3.1E-18 1.1E-22 170.3 -13.3 149 206-389 157-328 (365)
122 2gza_A Type IV secretion syste 99.6 2.5E-15 8.7E-20 149.2 6.3 132 206-402 164-297 (361)
123 2bbw_A Adenylate kinase 4, AK4 99.5 6.2E-18 2.1E-22 158.7 -12.7 145 216-377 26-197 (246)
124 1htw_A HI0065; nucleotide-bind 99.5 2.2E-16 7.5E-21 139.0 -3.2 81 201-287 17-97 (158)
125 2f1r_A Molybdopterin-guanine d 99.5 5.1E-17 1.7E-21 144.9 -7.7 138 218-380 3-163 (171)
126 2yhs_A FTSY, cell division pro 99.5 1.8E-15 6E-20 154.8 1.9 153 207-388 283-447 (503)
127 2bdt_A BH3686; alpha-beta prot 99.5 5.1E-17 1.7E-21 145.9 -9.8 158 217-402 2-168 (189)
128 2qm8_A GTPase/ATPase; G protei 99.5 5.2E-17 1.8E-21 159.9 -11.4 165 203-378 41-260 (337)
129 3e70_C DPA, signal recognition 99.5 2.6E-15 8.8E-20 147.2 0.7 145 213-390 125-279 (328)
130 2rcn_A Probable GTPase ENGC; Y 99.5 1.6E-14 5.6E-19 142.7 5.5 122 206-345 205-328 (358)
131 1n0w_A DNA repair protein RAD5 99.5 1.7E-14 5.9E-19 133.6 5.3 137 207-391 13-175 (243)
132 3ec2_A DNA replication protein 99.5 3.1E-14 1E-18 126.8 5.8 48 346-393 98-146 (180)
133 2kjq_A DNAA-related protein; s 99.5 1.5E-14 5.1E-19 125.8 3.4 45 346-391 81-126 (149)
134 1udx_A The GTP-binding protein 99.5 3.4E-15 1.2E-19 150.7 -1.6 170 207-401 147-319 (416)
135 3auy_A DNA double-strand break 99.4 1.3E-13 4.3E-18 137.3 9.2 72 329-403 279-357 (371)
136 1odf_A YGR205W, hypothetical 3 99.4 6.9E-15 2.4E-19 141.8 -1.7 133 215-364 29-168 (290)
137 1p9r_A General secretion pathw 99.4 5.6E-16 1.9E-20 156.6 -11.7 147 193-353 145-314 (418)
138 2oap_1 GSPE-2, type II secreti 99.4 1.3E-16 4.6E-21 165.1 -17.1 179 204-399 247-458 (511)
139 1sxj_E Activator 1 40 kDa subu 99.4 9.9E-13 3.4E-17 128.9 8.5 136 219-391 38-175 (354)
140 3lda_A DNA repair protein RAD5 99.3 7.8E-13 2.7E-17 132.8 5.7 136 206-389 166-327 (400)
141 3c8u_A Fructokinase; YP_612366 99.3 6.6E-15 2.2E-19 134.6 -8.8 150 214-388 19-181 (208)
142 2yv5_A YJEQ protein; hydrolase 99.3 1E-13 3.4E-18 134.4 -1.9 123 213-344 161-301 (302)
143 1sq5_A Pantothenate kinase; P- 99.3 1.9E-14 6.6E-19 139.7 -9.2 95 179-292 38-156 (308)
144 1lvg_A Guanylate kinase, GMP k 99.3 4.4E-15 1.5E-19 135.0 -13.9 133 215-377 2-153 (198)
145 2x8a_A Nuclear valosin-contain 99.2 3.4E-15 1.1E-19 142.8 -16.9 143 203-373 32-190 (274)
146 1in4_A RUVB, holliday junction 99.2 1.1E-13 3.8E-18 135.7 -9.8 153 202-378 29-194 (334)
147 1ls1_A Signal recognition part 99.1 1.6E-10 5.5E-15 111.4 10.6 129 208-388 91-220 (295)
148 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 2.4E-13 8.2E-18 136.1 -10.5 156 213-402 16-193 (392)
149 1vma_A Cell division protein F 99.1 3.6E-11 1.2E-15 116.5 4.7 113 209-376 96-211 (306)
150 1u0l_A Probable GTPase ENGC; p 99.1 1E-11 3.5E-16 120.1 0.2 102 212-322 164-288 (301)
151 1t9h_A YLOQ, probable GTPase E 99.1 9.6E-12 3.3E-16 120.6 -0.1 119 212-338 168-303 (307)
152 2dr3_A UPF0273 protein PH0284; 99.1 8E-12 2.7E-16 115.7 -0.7 57 347-403 127-193 (247)
153 3lnc_A Guanylate kinase, GMP k 99.1 4.7E-14 1.6E-18 130.7 -16.9 39 204-242 14-53 (231)
154 2r6a_A DNAB helicase, replicat 99.0 1.2E-10 4E-15 118.9 5.2 175 204-403 190-395 (454)
155 1iy2_A ATP-dependent metallopr 99.0 1.3E-13 4.4E-18 131.4 -16.3 130 203-358 61-195 (278)
156 1ixz_A ATP-dependent metallopr 99.0 2E-13 6.9E-18 128.1 -16.1 143 203-371 37-196 (254)
157 3k1j_A LON protease, ATP-depen 99.0 1.8E-11 6.2E-16 129.3 -4.1 161 202-375 45-227 (604)
158 2ius_A DNA translocase FTSK; n 99.0 1.1E-11 3.8E-16 127.7 -5.7 166 209-393 159-345 (512)
159 3euj_A Chromosome partition pr 99.0 1.5E-10 5E-15 118.6 2.5 51 204-257 17-67 (483)
160 1oix_A RAS-related protein RAB 98.9 1.5E-09 5.1E-14 97.1 6.9 39 336-376 151-189 (191)
161 2zr9_A Protein RECA, recombina 98.9 2.1E-09 7.3E-14 106.0 8.1 55 337-391 126-199 (349)
162 2px0_A Flagellar biosynthesis 98.9 2.3E-09 7.9E-14 103.4 7.7 130 215-401 103-236 (296)
163 3tr0_A Guanylate kinase, GMP k 98.9 7.6E-11 2.6E-15 106.3 -2.8 69 211-285 1-72 (205)
164 1svm_A Large T antigen; AAA+ f 98.8 5.8E-12 2E-16 125.5 -15.8 143 204-359 156-312 (377)
165 2f9l_A RAB11B, member RAS onco 98.7 3.5E-09 1.2E-13 95.0 2.4 36 339-376 130-165 (199)
166 2ce7_A Cell division protein F 98.7 1.5E-08 5E-13 103.8 6.8 59 333-391 93-165 (476)
167 1qhl_A Protein (cell division 98.7 7.8E-10 2.7E-14 102.6 -2.8 59 211-272 22-91 (227)
168 3hr8_A Protein RECA; alpha and 98.6 7.6E-09 2.6E-13 102.2 1.5 49 206-256 48-99 (356)
169 4eun_A Thermoresistant glucoki 98.6 2.1E-09 7.1E-14 97.1 -3.1 72 211-288 23-96 (200)
170 2qtf_A Protein HFLX, GTP-bindi 98.6 1.2E-07 4.2E-12 93.9 9.1 150 216-377 177-352 (364)
171 2xau_A PRE-mRNA-splicing facto 98.5 1E-07 3.5E-12 103.3 7.0 70 330-400 190-261 (773)
172 2e87_A Hypothetical protein PH 98.5 2E-07 6.8E-12 91.9 7.8 60 330-391 231-293 (357)
173 2dy1_A Elongation factor G; tr 98.4 4.3E-08 1.5E-12 104.6 2.0 133 211-392 3-138 (665)
174 3nwj_A ATSK2; P loop, shikimat 98.4 1.8E-08 6.1E-13 94.8 -1.2 51 178-240 17-71 (250)
175 4a1f_A DNAB helicase, replicat 98.4 1.3E-07 4.6E-12 92.5 5.0 129 205-388 34-164 (338)
176 3kta_A Chromosome segregation 98.4 1.1E-07 3.7E-12 84.0 3.0 34 208-242 18-51 (182)
177 3t34_A Dynamin-related protein 98.4 1.3E-06 4.4E-11 86.1 10.3 57 331-388 155-212 (360)
178 3uie_A Adenylyl-sulfate kinase 98.4 1.9E-08 6.4E-13 90.8 -2.8 52 203-257 11-64 (200)
179 4e22_A Cytidylate kinase; P-lo 98.4 4.2E-08 1.4E-12 92.1 -0.6 76 206-286 19-114 (252)
180 2dhr_A FTSH; AAA+ protein, hex 98.3 1.1E-09 3.8E-14 112.8 -12.6 130 204-359 53-187 (499)
181 3vaa_A Shikimate kinase, SK; s 98.3 2.9E-07 1E-11 82.8 3.6 39 203-241 11-49 (199)
182 3a00_A Guanylate kinase, GMP k 98.3 1.4E-07 4.9E-12 84.0 1.5 26 217-242 1-26 (186)
183 1zu4_A FTSY; GTPase, signal re 98.3 1.4E-07 4.8E-12 91.8 1.5 80 207-288 95-187 (320)
184 2j41_A Guanylate kinase; GMP, 98.2 4.5E-07 1.6E-11 81.3 3.7 32 212-243 1-32 (207)
185 1fnn_A CDC6P, cell division co 98.2 2.9E-06 9.9E-11 83.2 9.4 44 347-391 124-170 (389)
186 3b9p_A CG5977-PA, isoform A; A 98.2 9.3E-06 3.2E-10 77.1 12.3 71 332-402 97-184 (297)
187 1jjv_A Dephospho-COA kinase; P 98.2 1.7E-07 6E-12 84.4 -0.2 69 331-403 60-129 (206)
188 2vp4_A Deoxynucleoside kinase; 98.2 3.5E-07 1.2E-11 84.4 1.4 43 209-257 12-54 (230)
189 1kgd_A CASK, peripheral plasma 98.1 7.7E-07 2.6E-11 78.8 2.8 37 215-252 3-39 (180)
190 3bh0_A DNAB-like replicative h 98.1 2.2E-06 7.7E-11 82.9 5.1 131 205-388 56-189 (315)
191 1ega_A Protein (GTP-binding pr 98.1 4.9E-06 1.7E-10 80.0 7.1 64 331-402 101-170 (301)
192 3tau_A Guanylate kinase, GMP k 98.0 2.4E-06 8.1E-11 77.5 3.6 29 215-243 6-34 (208)
193 2z4s_A Chromosomal replication 98.0 3.4E-06 1.2E-10 85.5 5.0 45 347-391 193-238 (440)
194 3tqc_A Pantothenate kinase; bi 98.0 3.4E-07 1.2E-11 89.1 -3.1 41 202-242 71-117 (321)
195 1v5w_A DMC1, meiotic recombina 98.0 2.5E-05 8.6E-10 76.4 9.9 33 207-239 111-144 (343)
196 3ney_A 55 kDa erythrocyte memb 97.9 2.9E-06 9.8E-11 76.8 2.6 29 214-242 16-44 (197)
197 1knq_A Gluconate kinase; ALFA/ 97.9 2.3E-06 7.9E-11 74.8 1.5 37 215-257 6-42 (175)
198 3kl4_A SRP54, signal recogniti 97.9 1.9E-05 6.3E-10 79.8 8.0 27 216-242 96-122 (433)
199 3cf0_A Transitional endoplasmi 97.9 1.1E-05 3.9E-10 77.2 6.2 30 212-241 44-73 (301)
200 2qby_A CDC6 homolog 1, cell di 97.9 5.6E-06 1.9E-10 80.7 4.0 27 215-241 43-69 (386)
201 1rz3_A Hypothetical protein rb 97.9 2.1E-06 7.1E-11 77.4 0.6 42 213-256 18-59 (201)
202 2z43_A DNA repair and recombin 97.9 3.4E-05 1.1E-09 74.8 8.8 34 206-239 95-129 (324)
203 1ypw_A Transitional endoplasmi 97.8 1.8E-05 6E-10 86.2 6.8 31 212-242 233-263 (806)
204 2ffh_A Protein (FFH); SRP54, s 97.8 2.9E-05 1E-09 78.2 7.8 46 208-257 91-136 (425)
205 1kag_A SKI, shikimate kinase I 97.8 7.7E-06 2.6E-10 71.1 2.4 27 216-242 3-29 (173)
206 3cr8_A Sulfate adenylyltranfer 97.8 5E-06 1.7E-10 86.6 1.1 42 213-256 365-408 (552)
207 1f2t_A RAD50 ABC-ATPase; DNA d 97.8 1.4E-05 4.7E-10 68.8 3.7 29 209-238 16-44 (149)
208 2qt1_A Nicotinamide riboside k 97.7 1.4E-05 4.8E-10 71.9 3.6 32 210-241 14-45 (207)
209 3ice_A Transcription terminati 97.7 5.6E-06 1.9E-10 82.0 1.0 51 178-240 133-197 (422)
210 3llm_A ATP-dependent RNA helic 97.7 0.00013 4.5E-09 67.0 9.5 67 332-400 162-229 (235)
211 2w58_A DNAI, primosome compone 97.6 4.9E-05 1.7E-09 67.8 5.4 23 218-240 55-77 (202)
212 2p67_A LAO/AO transport system 97.6 6.4E-06 2.2E-10 80.6 -1.1 39 203-241 42-80 (341)
213 2q6t_A DNAB replication FORK h 97.6 7.7E-05 2.6E-09 75.5 6.8 160 205-388 188-361 (444)
214 3h4m_A Proteasome-activating n 97.5 0.00014 4.9E-09 68.3 7.2 27 214-240 48-74 (285)
215 4eaq_A DTMP kinase, thymidylat 97.5 5.4E-05 1.8E-09 69.8 3.5 46 207-255 13-61 (229)
216 2gj8_A MNME, tRNA modification 97.5 0.00013 4.4E-09 63.4 5.7 27 215-241 2-28 (172)
217 3qks_A DNA double-strand break 97.5 6.3E-05 2.2E-09 68.0 3.7 29 209-238 16-44 (203)
218 1l8q_A Chromosomal replication 97.4 0.00037 1.3E-08 67.0 9.1 45 346-390 96-141 (324)
219 1mky_A Probable GTP-binding pr 97.4 0.00011 3.9E-09 74.1 5.6 70 218-287 181-263 (439)
220 3m6a_A ATP-dependent protease 97.4 1.1E-05 3.9E-10 83.8 -1.9 50 203-255 95-144 (543)
221 1cke_A CK, MSSA, protein (cyti 97.4 6E-05 2.1E-09 68.4 3.1 56 217-272 5-73 (227)
222 3lxx_A GTPase IMAP family memb 97.4 0.00087 3E-08 61.4 10.7 24 219-242 31-54 (239)
223 2pez_A Bifunctional 3'-phospho 97.4 7.2E-05 2.5E-09 65.5 3.1 38 215-255 3-42 (179)
224 1m2o_B GTP-binding protein SAR 97.4 0.00015 5.2E-09 64.0 5.2 50 205-255 12-67 (190)
225 1y63_A LMAJ004144AAA protein; 97.4 8.9E-05 3.1E-09 65.5 3.4 32 209-240 2-33 (184)
226 3d8b_A Fidgetin-like protein 1 97.4 0.00084 2.9E-08 65.7 10.7 26 215-240 115-140 (357)
227 3bos_A Putative DNA replicatio 97.4 0.0001 3.5E-09 66.7 3.9 44 347-390 103-148 (242)
228 1f6b_A SAR1; gtpases, N-termin 97.3 5.8E-05 2E-09 67.3 2.0 51 204-255 13-69 (198)
229 2qor_A Guanylate kinase; phosp 97.3 8.8E-05 3E-09 66.6 3.0 29 213-241 8-36 (204)
230 2www_A Methylmalonic aciduria 97.3 4.9E-05 1.7E-09 74.6 0.8 38 215-254 72-109 (349)
231 4fcw_A Chaperone protein CLPB; 97.3 0.00025 8.6E-09 67.3 5.6 26 216-241 46-71 (311)
232 2qag_A Septin-2, protein NEDD5 97.3 1.7E-05 5.7E-10 78.3 -2.7 45 178-241 17-61 (361)
233 1u94_A RECA protein, recombina 97.3 0.00068 2.3E-08 66.7 8.7 34 206-239 50-85 (356)
234 1m7g_A Adenylylsulfate kinase; 97.2 5.1E-05 1.7E-09 68.6 0.2 42 212-255 20-63 (211)
235 2v1u_A Cell division control p 97.2 0.00046 1.6E-08 67.1 6.5 26 215-240 42-67 (387)
236 2if2_A Dephospho-COA kinase; a 97.1 0.00016 5.4E-09 64.5 2.7 21 219-239 3-23 (204)
237 2wji_A Ferrous iron transport 97.1 0.00051 1.8E-08 58.9 5.8 23 219-241 5-27 (165)
238 2b8t_A Thymidine kinase; deoxy 97.1 0.00044 1.5E-08 63.5 5.2 51 348-403 89-148 (223)
239 2qz4_A Paraplegin; AAA+, SPG7, 97.1 0.0013 4.4E-08 60.6 8.4 26 215-240 37-62 (262)
240 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.0047 1.6E-07 59.5 12.6 28 214-241 42-69 (322)
241 2ga8_A Hypothetical 39.9 kDa p 97.1 7.1E-05 2.4E-09 73.5 -0.4 36 205-240 10-47 (359)
242 3auy_A DNA double-strand break 97.1 0.00028 9.7E-09 69.6 4.0 31 207-238 16-46 (371)
243 1sxj_C Activator 1 40 kDa subu 97.1 8E-05 2.7E-09 72.3 -0.3 40 202-241 29-70 (340)
244 2yvu_A Probable adenylyl-sulfa 97.0 0.0003 1E-08 61.9 3.4 30 213-242 9-38 (186)
245 2wjg_A FEOB, ferrous iron tran 97.0 0.00066 2.3E-08 59.0 5.1 22 219-240 9-30 (188)
246 2p5t_B PEZT; postsegregational 97.0 0.00015 5.1E-09 67.6 0.9 46 206-256 22-67 (253)
247 3cm0_A Adenylate kinase; ATP-b 97.0 0.00033 1.1E-08 61.3 3.1 25 215-239 2-26 (186)
248 3t61_A Gluconokinase; PSI-biol 97.0 0.00028 9.4E-09 63.0 2.5 24 217-240 18-41 (202)
249 1np6_A Molybdopterin-guanine d 96.9 0.00041 1.4E-08 61.3 3.3 38 218-255 7-45 (174)
250 1qhx_A CPT, protein (chloramph 96.9 0.00048 1.7E-08 59.8 3.6 25 217-241 3-27 (178)
251 3kb2_A SPBC2 prophage-derived 96.9 0.00051 1.7E-08 59.0 3.3 22 219-240 3-24 (173)
252 1j8m_F SRP54, signal recogniti 96.8 0.00014 4.7E-09 69.8 -0.7 46 208-256 89-135 (297)
253 1q3t_A Cytidylate kinase; nucl 96.8 0.00052 1.8E-08 63.0 3.2 26 214-239 13-38 (236)
254 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00071 2.4E-08 67.4 3.8 44 211-254 16-68 (396)
255 1lv7_A FTSH; alpha/beta domain 96.8 0.00044 1.5E-08 64.1 2.2 45 206-256 36-80 (257)
256 2rhm_A Putative kinase; P-loop 96.8 0.00071 2.4E-08 59.4 3.4 25 215-239 3-27 (193)
257 1kht_A Adenylate kinase; phosp 96.8 0.00074 2.5E-08 59.0 3.5 24 217-240 3-26 (192)
258 2zej_A Dardarin, leucine-rich 96.7 0.00069 2.3E-08 59.2 3.1 22 219-240 4-25 (184)
259 3r20_A Cytidylate kinase; stru 96.7 0.00077 2.6E-08 62.4 3.3 23 217-239 9-31 (233)
260 3trf_A Shikimate kinase, SK; a 96.6 0.001 3.5E-08 58.1 3.5 25 216-240 4-28 (185)
261 3iij_A Coilin-interacting nucl 96.6 0.00077 2.6E-08 58.8 2.4 25 215-239 9-33 (180)
262 1vht_A Dephospho-COA kinase; s 96.6 0.0011 3.8E-08 59.7 3.6 24 216-239 3-26 (218)
263 3lw7_A Adenylate kinase relate 96.6 0.0011 3.7E-08 56.7 3.2 19 219-237 3-21 (179)
264 2v54_A DTMP kinase, thymidylat 96.6 0.0013 4.4E-08 58.3 3.6 26 216-241 3-28 (204)
265 1xp8_A RECA protein, recombina 96.6 0.0061 2.1E-07 60.0 8.8 28 212-239 69-96 (366)
266 2ze6_A Isopentenyl transferase 96.5 0.0011 3.9E-08 61.7 3.3 23 218-240 2-24 (253)
267 2jaq_A Deoxyguanosine kinase; 96.5 0.0012 4.1E-08 58.3 3.3 22 219-240 2-23 (205)
268 2qp9_X Vacuolar protein sortin 96.5 0.0056 1.9E-07 59.8 8.2 26 215-240 82-107 (355)
269 1ex7_A Guanylate kinase; subst 96.5 0.0012 4.1E-08 58.9 3.0 21 219-239 3-23 (186)
270 3vfd_A Spastin; ATPase, microt 96.5 0.014 4.9E-07 57.4 11.2 26 215-240 146-171 (389)
271 2plr_A DTMP kinase, probable t 96.5 0.0014 4.9E-08 58.1 3.6 26 216-241 3-28 (213)
272 2wwf_A Thymidilate kinase, put 96.5 0.0014 4.9E-08 58.3 3.5 25 215-239 8-32 (212)
273 3bgw_A DNAB-like replicative h 96.5 0.0044 1.5E-07 62.6 7.5 35 205-239 185-219 (444)
274 2c95_A Adenylate kinase 1; tra 96.5 0.0014 4.9E-08 57.5 3.3 25 215-239 7-31 (196)
275 1uf9_A TT1252 protein; P-loop, 96.4 0.0016 5.4E-08 57.6 3.5 24 217-240 8-31 (203)
276 3eie_A Vacuolar protein sortin 96.4 0.009 3.1E-07 57.3 9.0 26 215-240 49-74 (322)
277 1nn5_A Similar to deoxythymidy 96.4 0.0016 5.6E-08 58.0 3.5 25 215-239 7-31 (215)
278 1gtv_A TMK, thymidylate kinase 96.4 0.00078 2.7E-08 60.2 1.3 23 219-241 2-24 (214)
279 1q57_A DNA primase/helicase; d 96.4 0.019 6.5E-07 58.6 11.9 35 205-239 230-264 (503)
280 3co5_A Putative two-component 96.4 0.0094 3.2E-07 50.1 8.0 41 349-390 76-116 (143)
281 1ly1_A Polynucleotide kinase; 96.4 0.0017 5.8E-08 56.1 3.3 22 218-239 3-24 (181)
282 1via_A Shikimate kinase; struc 96.4 0.0016 5.4E-08 56.6 3.0 22 219-240 6-27 (175)
283 2bwj_A Adenylate kinase 5; pho 96.4 0.00075 2.6E-08 59.5 0.8 27 214-240 9-35 (199)
284 1gvn_B Zeta; postsegregational 96.3 0.0016 5.3E-08 62.0 3.0 36 215-254 31-66 (287)
285 4dcu_A GTP-binding protein ENG 96.3 0.0038 1.3E-07 63.1 5.7 54 334-391 88-142 (456)
286 1tev_A UMP-CMP kinase; ploop, 96.3 0.0022 7.4E-08 56.1 3.4 23 217-239 3-25 (196)
287 1nks_A Adenylate kinase; therm 96.3 0.0021 7E-08 56.1 3.1 22 219-240 3-24 (194)
288 3hu3_A Transitional endoplasmi 96.2 0.0052 1.8E-07 62.9 6.4 27 214-240 235-261 (489)
289 3cmw_A Protein RECA, recombina 96.2 0.01 3.5E-07 68.8 9.4 27 213-239 728-754 (1706)
290 3k53_A Ferrous iron transport 96.2 0.002 6.9E-08 60.3 3.0 44 357-401 144-188 (271)
291 1aky_A Adenylate kinase; ATP:A 96.2 0.0027 9.3E-08 57.3 3.6 26 215-240 2-27 (220)
292 1xjc_A MOBB protein homolog; s 96.1 0.0028 9.6E-08 55.6 3.3 23 218-240 5-27 (169)
293 4ag6_A VIRB4 ATPase, type IV s 96.1 0.0019 6.5E-08 63.9 2.2 44 348-391 262-308 (392)
294 1ko7_A HPR kinase/phosphatase; 96.1 0.0047 1.6E-07 59.5 4.8 37 203-240 131-167 (314)
295 2vli_A Antibiotic resistance p 96.1 0.0021 7.3E-08 55.8 2.2 25 216-240 4-28 (183)
296 2z0h_A DTMP kinase, thymidylat 96.1 0.0031 1.1E-07 55.3 3.3 22 219-240 2-23 (197)
297 1zd8_A GTP:AMP phosphotransfer 96.1 0.0031 1.1E-07 57.2 3.3 25 215-239 5-29 (227)
298 3ake_A Cytidylate kinase; CMP 96.0 0.0034 1.1E-07 55.6 3.3 22 219-240 4-25 (208)
299 3q72_A GTP-binding protein RAD 96.0 0.0031 1.1E-07 53.3 2.9 23 219-241 4-26 (166)
300 2cdn_A Adenylate kinase; phosp 96.0 0.0038 1.3E-07 55.4 3.6 24 216-239 19-42 (201)
301 2ged_A SR-beta, signal recogni 96.0 0.003 1E-07 55.1 2.6 24 218-241 49-72 (193)
302 2nzj_A GTP-binding protein REM 95.9 0.0038 1.3E-07 53.2 3.1 22 219-240 6-27 (175)
303 2erx_A GTP-binding protein DI- 95.9 0.0038 1.3E-07 52.8 3.1 22 219-240 5-26 (172)
304 1zak_A Adenylate kinase; ATP:A 95.9 0.0033 1.1E-07 56.8 2.9 24 216-239 4-27 (222)
305 1jal_A YCHF protein; nucleotid 95.9 0.005 1.7E-07 60.6 4.3 38 217-254 2-48 (363)
306 1zuh_A Shikimate kinase; alpha 95.9 0.0041 1.4E-07 53.5 3.3 22 218-239 8-29 (168)
307 1z2a_A RAS-related protein RAB 95.9 0.0033 1.1E-07 53.1 2.6 22 219-240 7-28 (168)
308 2pbr_A DTMP kinase, thymidylat 95.9 0.0042 1.4E-07 54.2 3.3 22 219-240 2-23 (195)
309 1ukz_A Uridylate kinase; trans 95.9 0.0044 1.5E-07 54.9 3.4 23 217-239 15-37 (203)
310 3fb4_A Adenylate kinase; psych 95.9 0.0041 1.4E-07 55.7 3.3 21 219-239 2-22 (216)
311 1fzq_A ADP-ribosylation factor 95.9 0.0037 1.3E-07 54.3 2.9 22 219-240 18-39 (181)
312 3tw8_B RAS-related protein RAB 95.9 0.004 1.4E-07 53.2 3.0 22 219-240 11-32 (181)
313 1e6c_A Shikimate kinase; phosp 95.9 0.0036 1.2E-07 53.8 2.7 22 218-239 3-24 (173)
314 3q85_A GTP-binding protein REM 95.9 0.0043 1.5E-07 52.6 3.2 21 220-240 5-25 (169)
315 2ce2_X GTPase HRAS; signaling 95.9 0.0034 1.2E-07 52.6 2.4 22 219-240 5-26 (166)
316 1qf9_A UMP/CMP kinase, protein 95.8 0.0046 1.6E-07 53.8 3.3 23 217-239 6-28 (194)
317 2iyv_A Shikimate kinase, SK; t 95.8 0.0037 1.3E-07 54.5 2.7 22 218-239 3-24 (184)
318 1svi_A GTP-binding protein YSX 95.8 0.0042 1.4E-07 54.2 2.9 23 219-241 25-47 (195)
319 3b1v_A Ferrous iron uptake tra 95.8 0.0046 1.6E-07 58.3 3.4 22 219-240 5-26 (272)
320 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0049 1.7E-07 57.4 3.6 25 216-240 3-27 (260)
321 1u8z_A RAS-related protein RAL 95.8 0.0038 1.3E-07 52.5 2.6 22 219-240 6-27 (168)
322 2pt5_A Shikimate kinase, SK; a 95.8 0.0049 1.7E-07 52.7 3.3 21 219-239 2-22 (168)
323 2dyk_A GTP-binding protein; GT 95.8 0.0038 1.3E-07 52.3 2.6 23 219-241 3-25 (161)
324 3a8t_A Adenylate isopentenyltr 95.8 0.0077 2.6E-07 58.6 5.0 26 216-241 39-64 (339)
325 1kao_A RAP2A; GTP-binding prot 95.8 0.0039 1.3E-07 52.4 2.6 22 219-240 5-26 (167)
326 2lkc_A Translation initiation 95.8 0.0058 2E-07 52.2 3.7 24 217-240 8-31 (178)
327 3lxw_A GTPase IMAP family memb 95.8 0.0045 1.5E-07 57.3 3.2 23 219-241 23-45 (247)
328 3ihw_A Centg3; RAS, centaurin, 95.8 0.0078 2.7E-07 52.5 4.6 21 219-239 22-42 (184)
329 3pqc_A Probable GTP-binding pr 95.8 0.0044 1.5E-07 53.7 2.9 23 219-241 25-47 (195)
330 2j9r_A Thymidine kinase; TK1, 95.8 0.015 5.2E-07 52.8 6.5 50 348-402 101-159 (214)
331 3dl0_A Adenylate kinase; phosp 95.8 0.005 1.7E-07 55.2 3.3 22 219-240 2-23 (216)
332 2orv_A Thymidine kinase; TP4A 95.7 0.035 1.2E-06 51.0 8.9 50 347-402 89-147 (234)
333 1z0j_A RAB-22, RAS-related pro 95.7 0.0042 1.4E-07 52.5 2.6 23 219-241 8-30 (170)
334 1z08_A RAS-related protein RAB 95.7 0.0043 1.5E-07 52.6 2.6 22 219-240 8-29 (170)
335 1g16_A RAS-related protein SEC 95.7 0.0041 1.4E-07 52.6 2.4 22 219-240 5-26 (170)
336 3tlx_A Adenylate kinase 2; str 95.7 0.0056 1.9E-07 56.4 3.5 25 215-239 27-51 (243)
337 1ek0_A Protein (GTP-binding pr 95.7 0.0044 1.5E-07 52.3 2.6 22 219-240 5-26 (170)
338 1c1y_A RAS-related protein RAP 95.7 0.0044 1.5E-07 52.2 2.6 22 219-240 5-26 (167)
339 2cxx_A Probable GTP-binding pr 95.7 0.005 1.7E-07 53.3 3.0 21 220-240 4-24 (190)
340 3dm5_A SRP54, signal recogniti 95.7 0.097 3.3E-06 52.7 12.7 25 216-240 99-123 (443)
341 1ky3_A GTP-binding protein YPT 95.7 0.0045 1.5E-07 53.0 2.6 22 219-240 10-31 (182)
342 1moz_A ARL1, ADP-ribosylation 95.7 0.0039 1.3E-07 53.6 2.2 23 217-239 18-40 (183)
343 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.0045 1.5E-07 52.9 2.6 22 219-240 9-30 (177)
344 2fn4_A P23, RAS-related protei 95.7 0.0045 1.5E-07 52.9 2.4 22 219-240 11-32 (181)
345 1uj2_A Uridine-cytidine kinase 95.6 0.0058 2E-07 56.5 3.3 22 218-239 23-44 (252)
346 2grj_A Dephospho-COA kinase; T 95.6 0.0061 2.1E-07 54.4 3.3 23 217-239 12-34 (192)
347 3t5d_A Septin-7; GTP-binding p 95.6 0.0051 1.7E-07 57.7 2.9 22 219-240 10-31 (274)
348 1qvr_A CLPB protein; coiled co 95.6 0.019 6.6E-07 62.6 7.8 24 218-241 589-612 (854)
349 1r2q_A RAS-related protein RAB 95.6 0.0053 1.8E-07 51.7 2.6 21 219-239 8-28 (170)
350 2hxs_A RAB-26, RAS-related pro 95.6 0.0062 2.1E-07 52.0 3.0 22 219-240 8-29 (178)
351 4dsu_A GTPase KRAS, isoform 2B 95.5 0.0054 1.9E-07 52.9 2.6 22 219-240 6-27 (189)
352 3clv_A RAB5 protein, putative; 95.5 0.0055 1.9E-07 53.3 2.6 22 219-240 9-30 (208)
353 3bc1_A RAS-related protein RAB 95.5 0.0057 1.9E-07 52.9 2.6 22 219-240 13-34 (195)
354 1upt_A ARL1, ADP-ribosylation 95.5 0.0058 2E-07 51.7 2.6 21 219-239 9-29 (171)
355 2oil_A CATX-8, RAS-related pro 95.5 0.0057 1.9E-07 53.3 2.6 22 219-240 27-48 (193)
356 2qmh_A HPR kinase/phosphorylas 95.5 0.01 3.5E-07 53.5 4.2 34 206-240 24-57 (205)
357 1a7j_A Phosphoribulokinase; tr 95.5 0.0033 1.1E-07 59.9 1.0 24 216-239 4-27 (290)
358 3be4_A Adenylate kinase; malar 95.5 0.0068 2.3E-07 54.6 3.1 25 216-240 4-28 (217)
359 1r8s_A ADP-ribosylation factor 95.5 0.0061 2.1E-07 51.3 2.6 20 220-239 3-22 (164)
360 1wf3_A GTP-binding protein; GT 95.5 0.0074 2.5E-07 57.7 3.4 25 215-240 6-30 (301)
361 3t1o_A Gliding protein MGLA; G 95.5 0.0068 2.3E-07 52.6 2.9 23 219-241 16-38 (198)
362 3cbq_A GTP-binding protein REM 95.5 0.0063 2.1E-07 53.7 2.7 21 219-239 25-45 (195)
363 2y8e_A RAB-protein 6, GH09086P 95.5 0.0059 2E-07 52.0 2.4 21 219-239 16-36 (179)
364 2g6b_A RAS-related protein RAB 95.4 0.0064 2.2E-07 52.1 2.6 22 219-240 12-33 (180)
365 2f6r_A COA synthase, bifunctio 95.4 0.0071 2.4E-07 57.1 3.1 23 217-239 75-97 (281)
366 3iby_A Ferrous iron transport 95.4 0.0076 2.6E-07 56.1 3.3 22 219-240 3-24 (256)
367 2a9k_A RAS-related protein RAL 95.4 0.0064 2.2E-07 52.2 2.6 22 219-240 20-41 (187)
368 1jbk_A CLPB protein; beta barr 95.4 0.0089 3E-07 51.3 3.5 26 215-240 41-66 (195)
369 3con_A GTPase NRAS; structural 95.4 0.0065 2.2E-07 52.7 2.6 22 219-240 23-44 (190)
370 1z0f_A RAB14, member RAS oncog 95.4 0.0066 2.3E-07 51.7 2.6 22 219-240 17-38 (179)
371 1ksh_A ARF-like protein 2; sma 95.4 0.0082 2.8E-07 51.9 3.2 25 217-241 18-42 (186)
372 1njg_A DNA polymerase III subu 95.4 0.0024 8.3E-08 57.0 -0.3 43 347-391 125-167 (250)
373 2xtp_A GTPase IMAP family memb 95.4 0.0075 2.6E-07 55.7 3.0 22 219-240 24-45 (260)
374 2xb4_A Adenylate kinase; ATP-b 95.4 0.0085 2.9E-07 54.3 3.3 21 219-239 2-22 (223)
375 3iev_A GTP-binding protein ERA 95.3 0.0085 2.9E-07 57.3 3.4 22 219-240 12-33 (308)
376 4edh_A DTMP kinase, thymidylat 95.3 0.0099 3.4E-07 53.9 3.6 26 215-240 4-29 (213)
377 2efe_B Small GTP-binding prote 95.3 0.0072 2.4E-07 51.8 2.6 22 219-240 14-35 (181)
378 4dhe_A Probable GTP-binding pr 95.3 0.0049 1.7E-07 55.1 1.5 23 219-241 31-53 (223)
379 3bwd_D RAC-like GTP-binding pr 95.3 0.009 3.1E-07 51.2 3.1 22 219-240 10-31 (182)
380 2bme_A RAB4A, RAS-related prot 95.3 0.0071 2.4E-07 52.1 2.4 22 219-240 12-33 (186)
381 1nrj_B SR-beta, signal recogni 95.3 0.0074 2.5E-07 53.8 2.6 23 219-241 14-36 (218)
382 2il1_A RAB12; G-protein, GDP, 95.3 0.0089 3E-07 52.3 3.0 22 219-240 28-49 (192)
383 2bov_A RAla, RAS-related prote 95.3 0.0075 2.6E-07 52.9 2.6 22 219-240 16-37 (206)
384 3cmu_A Protein RECA, recombina 95.3 0.048 1.6E-06 64.2 9.8 34 206-239 370-405 (2050)
385 2dby_A GTP-binding protein; GD 95.2 0.007 2.4E-07 59.6 2.5 21 220-240 4-24 (368)
386 1zbd_A Rabphilin-3A; G protein 95.2 0.0095 3.3E-07 52.3 3.2 22 219-240 10-31 (203)
387 2h57_A ADP-ribosylation factor 95.2 0.0079 2.7E-07 52.4 2.6 23 219-241 23-45 (190)
388 1vg8_A RAS-related protein RAB 95.2 0.0078 2.7E-07 52.9 2.6 22 219-240 10-31 (207)
389 2gf9_A RAS-related protein RAB 95.2 0.008 2.7E-07 52.3 2.6 22 219-240 24-45 (189)
390 2gf0_A GTP-binding protein DI- 95.2 0.0075 2.6E-07 52.6 2.4 21 219-239 10-30 (199)
391 3tkl_A RAS-related protein RAB 95.2 0.008 2.7E-07 52.3 2.6 22 219-240 18-39 (196)
392 1e4v_A Adenylate kinase; trans 95.2 0.0096 3.3E-07 53.4 3.2 21 219-239 2-22 (214)
393 1ak2_A Adenylate kinase isoenz 95.2 0.011 3.8E-07 53.8 3.6 25 216-240 15-39 (233)
394 1m7b_A RND3/RHOE small GTP-bin 95.2 0.0078 2.7E-07 52.2 2.4 22 219-240 9-30 (184)
395 3v9p_A DTMP kinase, thymidylat 95.2 0.008 2.7E-07 55.2 2.5 28 214-241 22-49 (227)
396 3kkq_A RAS-related protein M-R 95.2 0.0084 2.9E-07 51.6 2.6 22 219-240 20-41 (183)
397 3llu_A RAS-related GTP-binding 95.2 0.0092 3.2E-07 52.4 2.9 23 219-241 22-44 (196)
398 3a1s_A Iron(II) transport prot 95.2 0.0097 3.3E-07 55.5 3.1 22 219-240 7-28 (258)
399 2fg5_A RAB-22B, RAS-related pr 95.2 0.008 2.7E-07 52.6 2.4 22 219-240 25-46 (192)
400 2wsm_A Hydrogenase expression/ 95.2 0.0086 3E-07 53.5 2.7 23 218-240 31-53 (221)
401 1mh1_A RAC1; GTP-binding, GTPa 95.2 0.0087 3E-07 51.4 2.6 21 219-239 7-27 (186)
402 2qu8_A Putative nucleolar GTP- 95.2 0.01 3.5E-07 53.6 3.2 22 219-240 31-52 (228)
403 1ltq_A Polynucleotide kinase; 95.2 0.01 3.5E-07 56.0 3.3 22 218-239 3-24 (301)
404 4bas_A ADP-ribosylation factor 95.2 0.01 3.5E-07 51.7 3.0 22 219-240 19-40 (199)
405 3lv8_A DTMP kinase, thymidylat 95.2 0.011 3.9E-07 54.5 3.5 26 216-241 26-51 (236)
406 3i8s_A Ferrous iron transport 95.1 0.01 3.6E-07 55.7 3.2 22 219-240 5-26 (274)
407 1zj6_A ADP-ribosylation factor 95.1 0.01 3.5E-07 51.4 3.0 23 218-240 17-39 (187)
408 2f7s_A C25KG, RAS-related prot 95.1 0.018 6.3E-07 51.1 4.7 23 219-241 27-49 (217)
409 2o52_A RAS-related protein RAB 95.1 0.01 3.5E-07 52.3 3.0 22 219-240 27-48 (200)
410 3zvl_A Bifunctional polynucleo 95.1 0.011 3.7E-07 59.1 3.5 26 214-239 255-280 (416)
411 3oes_A GTPase rhebl1; small GT 95.1 0.0087 3E-07 52.7 2.4 22 219-240 26-47 (201)
412 2h17_A ADP-ribosylation factor 95.1 0.0096 3.3E-07 51.4 2.6 22 219-240 23-44 (181)
413 2cjw_A GTP-binding protein GEM 95.1 0.0093 3.2E-07 52.5 2.6 21 219-239 8-28 (192)
414 1z06_A RAS-related protein RAB 95.1 0.0093 3.2E-07 51.8 2.6 21 219-239 22-42 (189)
415 3umf_A Adenylate kinase; rossm 95.1 0.011 3.7E-07 53.9 3.0 27 214-240 26-52 (217)
416 3dz8_A RAS-related protein RAB 95.0 0.0093 3.2E-07 52.0 2.4 22 219-240 25-46 (191)
417 3d3q_A TRNA delta(2)-isopenten 95.0 0.011 3.9E-07 57.4 3.3 24 218-241 8-31 (340)
418 1jwy_B Dynamin A GTPase domain 95.0 0.011 3.9E-07 56.0 3.2 23 219-241 26-48 (315)
419 2a5j_A RAS-related protein RAB 95.0 0.0099 3.4E-07 51.8 2.6 22 219-240 23-44 (191)
420 3exa_A TRNA delta(2)-isopenten 95.0 0.013 4.5E-07 56.4 3.6 25 217-241 3-27 (322)
421 4tmk_A Protein (thymidylate ki 95.0 0.013 4.6E-07 53.1 3.5 26 216-241 2-27 (213)
422 2bcg_Y Protein YP2, GTP-bindin 95.0 0.0096 3.3E-07 52.5 2.4 22 219-240 10-31 (206)
423 3t5g_A GTP-binding protein RHE 95.0 0.012 4E-07 50.6 2.9 21 219-239 8-28 (181)
424 3tmk_A Thymidylate kinase; pho 95.0 0.014 4.7E-07 53.2 3.4 28 215-242 3-30 (216)
425 2i1q_A DNA repair and recombin 95.0 0.014 4.9E-07 55.9 3.8 34 206-239 86-120 (322)
426 1x3s_A RAS-related protein RAB 95.0 0.01 3.6E-07 51.4 2.6 22 219-240 17-38 (195)
427 2ew1_A RAS-related protein RAB 95.0 0.0099 3.4E-07 52.9 2.4 21 219-239 28-48 (201)
428 2h92_A Cytidylate kinase; ross 95.0 0.011 3.9E-07 52.8 2.9 24 217-240 3-26 (219)
429 1zd9_A ADP-ribosylation factor 95.0 0.011 3.6E-07 51.6 2.6 22 219-240 24-45 (188)
430 3reg_A RHO-like small GTPase; 95.0 0.011 3.6E-07 51.7 2.6 22 219-240 25-46 (194)
431 2p65_A Hypothetical protein PF 94.9 0.011 3.8E-07 50.7 2.6 25 216-240 42-66 (187)
432 2ocp_A DGK, deoxyguanosine kin 94.9 0.014 4.7E-07 53.4 3.4 26 216-241 1-26 (241)
433 3ld9_A DTMP kinase, thymidylat 94.9 0.015 5.1E-07 53.2 3.6 26 215-240 19-44 (223)
434 2q3h_A RAS homolog gene family 94.9 0.013 4.5E-07 51.3 3.2 22 219-240 22-43 (201)
435 2atv_A RERG, RAS-like estrogen 94.9 0.011 3.7E-07 51.8 2.6 22 219-240 30-51 (196)
436 3cph_A RAS-related protein SEC 94.9 0.011 3.7E-07 52.2 2.6 22 219-240 22-43 (213)
437 3cmw_A Protein RECA, recombina 94.9 0.074 2.5E-06 61.8 10.0 34 206-239 370-405 (1706)
438 2p5s_A RAS and EF-hand domain 94.9 0.011 3.8E-07 51.9 2.6 22 219-240 30-51 (199)
439 1p5z_B DCK, deoxycytidine kina 94.9 0.0099 3.4E-07 55.2 2.3 27 215-241 22-48 (263)
440 2j1l_A RHO-related GTP-binding 94.9 0.013 4.4E-07 52.3 3.0 22 219-240 36-57 (214)
441 2b6h_A ADP-ribosylation factor 94.9 0.013 4.4E-07 51.4 2.9 23 218-240 30-52 (192)
442 2zts_A Putative uncharacterize 94.9 0.018 6E-07 52.2 3.9 45 346-390 133-182 (251)
443 2r8r_A Sensor protein; KDPD, P 94.9 0.0082 2.8E-07 55.1 1.6 45 344-388 80-125 (228)
444 2aka_B Dynamin-1; fusion prote 94.9 0.012 4.3E-07 55.1 2.9 23 219-241 28-50 (299)
445 2fv8_A H6, RHO-related GTP-bin 94.8 0.011 3.8E-07 52.4 2.4 22 219-240 27-48 (207)
446 1sxj_D Activator 1 41 kDa subu 94.8 0.0049 1.7E-07 59.2 -0.0 42 348-391 133-174 (353)
447 3def_A T7I23.11 protein; chlor 94.8 0.013 4.6E-07 54.4 3.0 23 219-241 38-60 (262)
448 3crm_A TRNA delta(2)-isopenten 94.8 0.015 5E-07 56.3 3.3 24 218-241 6-29 (323)
449 2iwr_A Centaurin gamma 1; ANK 94.8 0.0094 3.2E-07 51.0 1.7 22 219-240 9-30 (178)
450 1sky_E F1-ATPase, F1-ATP synth 94.8 0.016 5.5E-07 58.8 3.7 34 206-240 141-174 (473)
451 1gwn_A RHO-related GTP-binding 94.8 0.012 4.1E-07 52.4 2.4 22 219-240 30-51 (205)
452 1h65_A Chloroplast outer envel 94.8 0.014 4.9E-07 54.4 3.0 23 219-241 41-63 (270)
453 2fu5_C RAS-related protein RAB 94.8 0.0091 3.1E-07 51.4 1.6 22 219-240 10-31 (183)
454 3c5c_A RAS-like protein 12; GD 94.7 0.013 4.5E-07 51.0 2.6 22 219-240 23-44 (187)
455 2fh5_B SR-beta, signal recogni 94.7 0.013 4.5E-07 51.9 2.6 22 219-240 9-30 (214)
456 2gco_A H9, RHO-related GTP-bin 94.6 0.013 4.6E-07 51.6 2.4 22 219-240 27-48 (201)
457 3cmu_A Protein RECA, recombina 94.6 0.15 5E-06 60.2 11.6 35 204-238 1066-1102(2050)
458 2x77_A ADP-ribosylation factor 94.6 0.013 4.4E-07 50.9 2.2 21 219-239 24-44 (189)
459 4djt_A GTP-binding nuclear pro 94.6 0.0085 2.9E-07 53.4 1.0 22 219-240 13-34 (218)
460 2g3y_A GTP-binding protein GEM 94.5 0.018 6.3E-07 51.8 3.1 22 219-240 39-60 (211)
461 3tqf_A HPR(Ser) kinase; transf 94.5 0.037 1.3E-06 48.7 4.9 33 206-239 6-38 (181)
462 3foz_A TRNA delta(2)-isopenten 94.5 0.021 7.1E-07 54.9 3.6 24 217-240 10-33 (316)
463 2atx_A Small GTP binding prote 94.5 0.015 5.2E-07 50.6 2.4 22 219-240 20-41 (194)
464 3pxi_A Negative regulator of g 94.5 0.076 2.6E-06 57.0 8.4 22 219-240 523-544 (758)
465 2hf9_A Probable hydrogenase ni 94.5 0.019 6.6E-07 51.4 3.2 23 218-240 39-61 (226)
466 2r62_A Cell division protease 94.4 0.0065 2.2E-07 56.3 -0.2 31 207-239 36-66 (268)
467 1ypw_A Transitional endoplasmi 94.4 0.007 2.4E-07 65.7 0.0 32 210-241 504-535 (806)
468 3cnl_A YLQF, putative uncharac 94.4 0.021 7.1E-07 53.4 3.3 25 218-242 100-124 (262)
469 3sr0_A Adenylate kinase; phosp 94.3 0.024 8.4E-07 51.0 3.3 22 219-240 2-23 (206)
470 2hup_A RAS-related protein RAB 94.3 0.018 6.3E-07 50.8 2.4 22 219-240 31-52 (201)
471 2yc2_C IFT27, small RAB-relate 94.3 0.0091 3.1E-07 52.4 0.4 22 219-240 22-43 (208)
472 3cpj_B GTP-binding protein YPT 94.2 0.02 6.7E-07 51.4 2.5 22 219-240 15-36 (223)
473 3euj_A Chromosome partition pr 94.2 0.058 2E-06 55.0 6.2 56 330-389 379-451 (483)
474 3eph_A TRNA isopentenyltransfe 94.2 0.025 8.5E-07 56.3 3.4 23 218-240 3-25 (409)
475 4gzl_A RAS-related C3 botulinu 94.1 0.021 7E-07 50.6 2.4 21 219-239 32-52 (204)
476 2orw_A Thymidine kinase; TMTK, 94.1 0.031 1.1E-06 49.3 3.5 50 348-402 76-134 (184)
477 3q3j_B RHO-related GTP-binding 94.0 0.023 7.9E-07 50.8 2.6 22 219-240 29-50 (214)
478 2j0v_A RAC-like GTP-binding pr 94.0 0.022 7.6E-07 50.3 2.4 22 219-240 11-32 (212)
479 3n70_A Transport activator; si 94.0 0.028 9.5E-07 47.2 2.9 42 348-391 76-117 (145)
480 3syl_A Protein CBBX; photosynt 93.9 0.032 1.1E-06 52.5 3.5 26 215-240 65-90 (309)
481 2chg_A Replication factor C sm 93.7 0.033 1.1E-06 48.8 3.0 41 348-390 102-142 (226)
482 2vhj_A Ntpase P4, P4; non- hyd 93.7 0.039 1.3E-06 53.4 3.6 33 207-239 113-145 (331)
483 1g5t_A COB(I)alamin adenosyltr 93.6 0.044 1.5E-06 49.1 3.6 65 336-401 106-174 (196)
484 1puj_A YLQF, conserved hypothe 93.5 0.042 1.4E-06 51.9 3.6 25 217-241 120-144 (282)
485 3r7w_A Gtpase1, GTP-binding pr 93.4 0.041 1.4E-06 52.5 3.2 24 217-240 3-26 (307)
486 1g8f_A Sulfate adenylyltransfe 93.4 0.036 1.2E-06 56.9 3.0 28 215-242 393-420 (511)
487 4hlc_A DTMP kinase, thymidylat 93.3 0.048 1.6E-06 49.0 3.4 25 217-241 2-26 (205)
488 1d2n_A N-ethylmaleimide-sensit 93.3 0.041 1.4E-06 51.1 3.0 26 215-240 62-87 (272)
489 2v3c_C SRP54, signal recogniti 93.3 0.022 7.4E-07 57.4 1.2 24 218-241 100-123 (432)
490 3th5_A RAS-related C3 botulinu 92.4 0.015 5.2E-07 51.2 0.0 21 219-239 32-52 (204)
491 2x2e_A Dynamin-1; nitration, h 93.2 0.032 1.1E-06 54.3 2.2 23 219-241 33-55 (353)
492 1lw7_A Transcriptional regulat 93.2 0.042 1.4E-06 53.6 3.1 29 330-358 296-329 (365)
493 3t15_A Ribulose bisphosphate c 93.2 0.048 1.6E-06 51.6 3.4 26 215-240 34-59 (293)
494 2qgz_A Helicase loader, putati 93.2 0.051 1.8E-06 51.9 3.6 53 346-398 212-266 (308)
495 2hjg_A GTP-binding protein ENG 93.2 0.039 1.3E-06 55.3 2.8 22 219-240 5-26 (436)
496 3gmt_A Adenylate kinase; ssgci 93.2 0.046 1.6E-06 50.2 3.0 22 218-239 9-30 (230)
497 3uk6_A RUVB-like 2; hexameric 93.1 0.049 1.7E-06 52.6 3.4 27 215-241 68-94 (368)
498 3l0i_B RAS-related protein RAB 93.1 0.0099 3.4E-07 52.3 -1.5 23 219-241 35-57 (199)
499 4a9a_A Ribosome-interacting GT 93.1 0.071 2.4E-06 52.5 4.6 38 219-256 74-120 (376)
500 3p32_A Probable GTPase RV1496/ 93.1 0.051 1.7E-06 52.9 3.5 24 216-239 78-101 (355)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.3e-48 Score=367.46 Aligned_cols=207 Identities=25% Similarity=0.358 Sum_probs=172.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. ...+++|+||||++++||++||+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT--EGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--ceEEEECCEEcc
Confidence 6789999988421 11256999999999999999999999999999999999998874 699999998753
Q ss_pred h---hh----hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCC
Q 015591 259 Q---ET----FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNG 330 (404)
Q Consensus 259 ~---~~----~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~ 330 (404)
. .. .++.+|||+|++.+++.+||+||+.++...+........+..+.+.++++.+++.+. .+... .+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh-----hh
Confidence 2 11 234699999999999999999999997654322223344556778899999999764 35553 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ +.+.+|++++
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~ 217 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIY 217 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 4588999875
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.4e-48 Score=385.50 Aligned_cols=206 Identities=23% Similarity=0.293 Sum_probs=179.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|... .+..++|+||||+|++||++||+||||||||||+|+|+|+.+|. +|+|.++|+++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~--~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT--EGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC--ceEEEECCEEC
Confidence 49999999988521 12357999999999999999999999999999999999998874 69999999885
Q ss_pred ch------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 258 VQ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 258 ~~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
.. ...++.+|||+|++.+++.+||+||+.|+...+. ....+..++++++++.++|.+..++.. .+|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 42 1246789999999999999999999999876542 334556678999999999988777764 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||+|||||+.+|++|||||||||||+.++..|++.|+++++ .|+|||++||+++ ++..+||++++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~v 236 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAV 236 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999975 4999999999997 68889999875
No 3
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.9e-48 Score=360.97 Aligned_cols=201 Identities=24% Similarity=0.309 Sum_probs=172.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++++|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT--EGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS--EEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEC
Confidence 388999998772 367999999999999999999999999999999999998764 69999999875
Q ss_pred chh------hhc-ceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 258 VQE------TFA-RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~~------~~~-~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
... .++ +.++||+|++.+++.+||+||+.++...+. ....+..+.++++++.+++.+..++..+ +
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKPY-----E 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCGG-----G
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCChh-----h
Confidence 321 122 579999999888899999999999764432 2233445678899999999888777653 7
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+ ..||+++.
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~ 211 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLE 211 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEE
Confidence 9999999999999999999999999999999999999999999999877999999999976 34 88999875
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.8e-48 Score=373.06 Aligned_cols=203 Identities=25% Similarity=0.339 Sum_probs=174.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+ ++..+|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|+++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~--~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS--SGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CeEEEECCEEC
Confidence 489999999873 1245999999999999999999999999999999999998764 69999999886
Q ss_pred c--h---hhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 258 V--Q---ETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 258 ~--~---~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
. . ..+++.+|||+|++ ..++.+||+||+.|+.... .....+..++++++++.+++.+..++..+ +|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cC
Confidence 2 1 23567899999985 3456889999999986543 23345556788999999999888887754 79
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||+++ ++...||++++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~ 216 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFV 216 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999997 56999999999998 67788999875
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=6.7e-48 Score=368.24 Aligned_cols=202 Identities=26% Similarity=0.345 Sum_probs=173.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++++|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 24 ~l~i~~l~~~y-------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~--~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSF-------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD--EGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTEES
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC--CcEEEECCEEC
Confidence 38999999977 2457999999999999999999999999999999999998764 69999999875
Q ss_pred c-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHh-hhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 258 V-----QETFARVSGYCEQTDIHSPQITVEESVIFSA-WLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 258 ~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
. ...+++.++||+|++.+++.+||+||+.|+. ... .....+..+.++++++.+++.+..++.. .+|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1234567999999988889999999999964 222 1223344567889999999988777764 379
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 231 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLF 231 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999986 57788999875
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.1e-48 Score=368.54 Aligned_cols=201 Identities=22% Similarity=0.277 Sum_probs=173.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| +++++|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 7 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~--~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS--EGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTEECC
T ss_pred EEEeeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEcc
Confidence 8899999877 2457999999999999999999999999999999999998764 699999998764
Q ss_pred h----------------hhhcceeEEeecCCCCCCCCCHHHHHHHHh-hhhcCccCChhhHHHHHHHHHHHcCCCCC-cc
Q 015591 259 Q----------------ETFARVSGYCEQTDIHSPQITVEESVIFSA-WLRLAPEINSKTKAEFVNEVLETIELDGI-KD 320 (404)
Q Consensus 259 ~----------------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~ 320 (404)
. ..+++.+|||+|++.+++.+||+||+.++. ..+ .....+..+.++++++.+++.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 134567999999988889999999999864 222 12233445678899999999877 77
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccc
Q 015591 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 321 ~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~ 400 (404)
+.. .+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|+
T Consensus 149 ~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 664 479999999999999999999999999999999999999999999999877999999999986 67789999
Q ss_pred ccc
Q 015591 401 VKQ 403 (404)
Q Consensus 401 ~l~ 403 (404)
+++
T Consensus 223 v~~ 225 (262)
T 1b0u_A 223 VIF 225 (262)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.8e-48 Score=383.79 Aligned_cols=203 Identities=25% Similarity=0.382 Sum_probs=176.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++
T Consensus 4 ~l~i~~ls~~y-------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSF-------------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS--EEEEEETTEEE
T ss_pred EEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 37889999877 3467999999999999999999999999999999999998874 69999999875
Q ss_pred ----ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 258 ----VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ----~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
.. ...++.+|||+|+..++|.+||+||+.|+...+. ...++..++++++++.++|.+..++.. .+||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 11 2345779999999999999999999999865432 234455678899999999998888775 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||+|||||+.+|++|||||||||||+..+..+++.|+++. +.|+|+|++|||++ ++..++|+++++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl 212 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVM 212 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEE
Confidence 999999999999999999999999999999999999999888875 46999999999997 788999998753
No 8
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.9e-48 Score=384.90 Aligned_cols=202 Identities=27% Similarity=0.386 Sum_probs=178.7
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| ++..+|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~G~I~i~G~~~~ 68 (381)
T 3rlf_A 4 VQLQNVTKAW-------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT--SGDLFIGEKRMN 68 (381)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC--CeEEEECCEECC
Confidence 7889999877 3467999999999999999999999999999999999998874 699999998864
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...++.+|||+|+..++|.+||+||+.|+...+. ...++..++++++++.++|.+..++.. .+|||||||
T Consensus 69 ~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQ 140 (381)
T 3rlf_A 69 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 140 (381)
T ss_dssp TCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHH
T ss_pred CCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHH
Confidence 3 2335679999999999999999999999876542 344556678999999999998888765 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|||||+.+|++||||||||+||+..+.++++.|+++.++ |+|+|++|||++ ++..++|+++++
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl 207 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVL 207 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999765 999999999997 789999998763
No 9
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=6e-48 Score=367.62 Aligned_cols=205 Identities=24% Similarity=0.315 Sum_probs=173.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++++|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 7 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~--~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEEC
T ss_pred EEEEeeeEEEE-------------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEC
Confidence 48999999977 2457999999999999999999999999999999999998764 69999999876
Q ss_pred ch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhh-hcCc---------cCChhhHHHHHHHHHHHcCCCCCccccc
Q 015591 258 VQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWL-RLAP---------EINSKTKAEFVNEVLETIELDGIKDSLV 323 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~-~~~~---------~~~~~~~~~~~~~~l~~l~l~~~~~~~v 323 (404)
.. ...++.++||+|++.+++.+||+||+.++... +... .....+..+.++++++.+++.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 32 22356799999998888889999999987532 1110 0122334567889999999988777775
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 324 g~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+ +||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++
T Consensus 152 ~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 4 79999999999999999999999999999999999999999999999877999999999997 57788999875
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-47 Score=364.37 Aligned_cols=202 Identities=25% Similarity=0.312 Sum_probs=174.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++++|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 15 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS--SGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTEET
T ss_pred eEEEEEEEEEE-------------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEC
Confidence 38999999977 2467999999999999999999999999999999999998764 69999999875
Q ss_pred ch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. ...++.+||++|++.+++.+||+||+.+...... ....+..+.++++++.+++.+..++.++ +|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHH
Confidence 32 3356779999999888899999999999754432 2223334668899999999887777653 799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||+++.
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~ 218 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIAL 218 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEE
Confidence 99999999999999999999999999999999999999999877999999999986 56778999875
No 11
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-47 Score=360.09 Aligned_cols=201 Identities=20% Similarity=0.299 Sum_probs=170.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++++|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ--KGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEC
Confidence 488999999772 357999999999999999999999999999999999998764 69999999876
Q ss_pred ch---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-CCCCccccccCCCCCCCC
Q 015591 258 VQ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-LDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ~~---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~vg~~~~~~LS 332 (404)
.. .. .++.++|++|++.+++.+||+||+.++.... ....+..+.++++++.++ +.+..++.. .+||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCC
Confidence 32 12 2445999999988889999999999864211 112234466788899884 877766664 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|+++.
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~ 211 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYV 211 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999777999999999986 67889999875
No 12
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.5e-47 Score=363.94 Aligned_cols=200 Identities=22% Similarity=0.318 Sum_probs=174.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++++|+||||++++||++||+||||||||||+|+|+|+.+|. +|+|.++|+++
T Consensus 11 ~l~~~~l~~~~-------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHV-------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS--HGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS--SCEEEETTEET
T ss_pred eEEEEeEEEEe-------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 48999999977 3467999999999999999999999999999999999998874 59999999875
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
.. ...++.++|++|++.+++.+||+||+.++.... ...+..+.++++++.+++.+..++..+ +||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 42 345567999999988888999999999975432 123345678899999999988887754 69999
Q ss_pred HHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVA------NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++|||++ ++...||++++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~v 220 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIML 220 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEE
Confidence 9999999999999 99999999999999999999999999999765 679999999997 67889999875
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.1e-47 Score=376.21 Aligned_cols=201 Identities=25% Similarity=0.346 Sum_probs=175.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| +++++|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKF-------------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT--SGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEES-------------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC--ceEEEECCEECC
Confidence 7888888866 3456999999999999999999999999999999999998874 699999998764
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...++.+|||+|+..+++.+||+||+.|+...+. ....+..++++++++.++|.+..++.. .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 2 2235679999999999999999999999865432 233445677899999999998888775 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |+|+|++|||++ ++..++|++++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~v 206 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAV 206 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999754 999999999986 78899999875
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.1e-47 Score=376.41 Aligned_cols=201 Identities=28% Similarity=0.373 Sum_probs=174.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| +++++|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYF-------------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT--SGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC--ccEEEECCEECC
Confidence 7888999876 3467999999999999999999999999999999999998874 699999998764
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...++.+|||+|+..+++.+||+||+.|+...+. ....+..++++++++.++|.+..++.. .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARR---ISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSC---SHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 2 2235679999999999999999999999754321 122333467899999999988887764 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||||||+..+..+++.|+++.++ |.|+|++|||++ ++..++|++++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~v 206 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAV 206 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999754 999999999986 68889999875
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=8.8e-47 Score=376.76 Aligned_cols=201 Identities=25% Similarity=0.354 Sum_probs=175.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| +++++|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS--RGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS--EEEEEETTEEEE
T ss_pred EEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC--ccEEEECCEECc
Confidence 7889999876 3467999999999999999999999999999999999998874 699999998753
Q ss_pred h-------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 259 Q-------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 259 ~-------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
. ...++.+|||+|+..+++.+||+||+.|+...+. ....+..++++++++.++|.+..++.. .+|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 2235679999999999999999999999865432 233445677899999999988887764 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||+|||||+.+|++||||||||+||+..+..+++.|+++.++ |.|+|++|||++ ++..++|++++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~v 212 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAV 212 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999754 999999999986 78889999875
No 16
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.3e-47 Score=352.05 Aligned_cols=196 Identities=19% Similarity=0.297 Sum_probs=170.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| ++ ++|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y-------------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~--~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGY-------------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL--KGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEES-------------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTEEG
T ss_pred eEEEEEEEEEe-------------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEh
Confidence 58999999876 34 6999999999999999999999999999999999998764 69999999876
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ..++.++||+|++.+++.+||+||+.++...+.. ..+ .+.++++++.+++.+. ++.. .+|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~----~~~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV----KVN-KNEIMDALESVEVLDL-KKKL-----GELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC----CCC-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC----chH-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHH
Confidence 4 3567899999998888889999999987543221 112 4567889999999877 6654 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|+++.
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~ 205 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHK 205 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGG
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999766899999999998 57778898875
No 17
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.4e-47 Score=375.48 Aligned_cols=204 Identities=26% Similarity=0.382 Sum_probs=177.2
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||++.|+ +++++|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|++
T Consensus 13 ~~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~g~~ 78 (355)
T 1z47_A 13 MTIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT--KGDVWIGGKR 78 (355)
T ss_dssp EEEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS--EEEEEETTEE
T ss_pred ceEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ccEEEECCEE
Confidence 3589999998661 2346999999999999999999999999999999999998874 6999999987
Q ss_pred Cch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 257 KVQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 257 ~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
+.. ...++.+|||+|+..+++.+||+||+.|+...+. ....+..++++++++.++|.+..++.. .+|||||
T Consensus 79 i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq 150 (355)
T 1z47_A 79 VTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR---VPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQ 150 (355)
T ss_dssp CTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHH
T ss_pred CCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHH
Confidence 642 2346789999999999999999999999865432 233445678899999999988888765 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||||||+.++..+++.|+++.++ |+|+|++|||++ ++..++|++++
T Consensus 151 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~v 218 (355)
T 1z47_A 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLV 218 (355)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999754 999999999986 78889999875
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.4e-47 Score=376.61 Aligned_cols=201 Identities=27% Similarity=0.383 Sum_probs=175.2
Q ss_pred EEEeceeEEeeccccccccccccCcee--eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLR--LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
++++||++.|. +++ +|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|++
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS--TGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS--EEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEE
Confidence 78899998773 345 999999999999999999999999999999999998874 6999999987
Q ss_pred Cch------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 257 KVQ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 257 ~~~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
+.. ...++.+|||+|+..+++.+||+||+.|+...+. ....+..++++++++.++|.+..++.. .+
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK---MSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS---CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 532 2346789999999999999999999999764331 233445677899999999998888765 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||||+|||||+.+|++|||||||||||+..+..+++.|+++.++ |+|+|++|||++ ++..++|++++
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~v 213 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGV 213 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999754 999999999986 78899999875
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=9.1e-47 Score=376.25 Aligned_cols=201 Identities=23% Similarity=0.340 Sum_probs=169.3
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++.
T Consensus 12 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT--EGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--ceEEEECCEECC
Confidence 8999999977 2467999999999999999999999999999999999998874 699999998764
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...++.+|||+|+..+++.+||+||+.|+...+. ....+..++++++++.++|.+..++.. .+|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK---FPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC--C---CCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 2 2235679999999999999999999999754331 233445677899999999988877764 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||||+.+|++||||||||+||+..+..+++.|+++.++ |.|+|++|||++ ++..++|++++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~v 214 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAV 214 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999765 999999999986 78899999875
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-46 Score=359.58 Aligned_cols=202 Identities=24% Similarity=0.324 Sum_probs=170.5
Q ss_pred EEEeceeEEeeccccccccccccCc---eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKK---LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
++++||++.|.. ++ +++|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.
T Consensus 3 l~~~~l~~~y~~-----------~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~--~G~I~~~g~ 69 (266)
T 2yz2_A 3 IEVVNVSHIFHR-----------GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT--SGDVLYDGE 69 (266)
T ss_dssp EEEEEEEEEEST-----------TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTE
T ss_pred EEEEEEEEEecC-----------CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEECCE
Confidence 788999987731 12 56999999999999999999999999999999999998764 699999998
Q ss_pred cCchhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC--CCccccccCCCCCCCC
Q 015591 256 PKVQETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD--GIKDSLVGIPGVNGLS 332 (404)
Q Consensus 256 ~~~~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~vg~~~~~~LS 332 (404)
++....+++.+|||+|++ ..++.+||+||+.++.... ....+..++++++++.+++. +..++.. .+||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LS 140 (266)
T 2yz2_A 70 RKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLS 140 (266)
T ss_dssp ECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSC
T ss_pred ECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCC
Confidence 764334567799999984 4567899999999865322 11122245678999999998 7777764 3799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|+++.
T Consensus 141 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~ 210 (266)
T 2yz2_A 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVV 210 (266)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999767999999999997 56778999875
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.7e-46 Score=371.42 Aligned_cols=197 Identities=20% Similarity=0.319 Sum_probs=171.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| +++ +|+|+||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++.
T Consensus 2 l~~~~l~~~y-------------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKW-------------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEEC-------------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC--CcEEEECCEECC
Confidence 5778888866 345 999999999999999999999999999999999998874 699999998764
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...++.+|||+|+..+++.+||+||+.|+...+.. ... ++++++++.++|.+..++.. .+|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 2 23456799999999999999999999998654421 111 66889999999998888775 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||||||+.++..+.+.|+++.+ .|+|+|++|||++ ++..++|++++
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~v 200 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAV 200 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999975 4999999999986 78899999875
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.4e-46 Score=355.14 Aligned_cols=204 Identities=25% Similarity=0.296 Sum_probs=163.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCceeeEEEECCcc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR--KTTGSMEGEIKIGGYP 256 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~--~~~~~~~G~I~i~G~~ 256 (404)
++++||++.| +++++|+||||++++||+++|+||||||||||+|+|+|+ .+| .+|+|.++|.+
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p--~~G~I~~~g~~ 68 (250)
T 2d2e_A 4 LEIRDLWASI-------------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV--ERGEILLDGEN 68 (250)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE--EEEEEEETTEE
T ss_pred EEEEeEEEEE-------------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECCEE
Confidence 7889999877 236799999999999999999999999999999999998 443 57999999987
Q ss_pred Cch---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCC-
Q 015591 257 KVQ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNG- 330 (404)
Q Consensus 257 ~~~---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~- 330 (404)
+.. .. .++.++|++|++.+++.+||+||+.++............+..+.++++++.+++. +..++.+ .+
T Consensus 69 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~ 143 (250)
T 2d2e_A 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEG 143 (250)
T ss_dssp CTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC
T ss_pred CCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccC
Confidence 532 12 2345899999988889999999999865321111112223346688999999994 6677664 35
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHh-cccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEA-FDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~-fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+... +|+++.
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~ 216 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHV 216 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999999999999767999999999987 45556 598875
No 23
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.5e-46 Score=365.84 Aligned_cols=200 Identities=25% Similarity=0.347 Sum_probs=163.7
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+ +++++|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~--~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS--SGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS--EEEEEETTEE
T ss_pred CeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC--CcEEEECCEE
Confidence 3599999999873 2356999999999999999999999999999999999998874 6999999988
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-------CCCCccccccCC
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDGIKDSLVGIP 326 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~ 326 (404)
+.. ..+++.++||+|++.++ ..||+||+.|+..... . +.++++++.++ +++..++.+++.
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~eNi~~~~~~~~-----~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 187 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLF-NDTIADNIRYGRVTAG-----N----DEVEAAAQAAGIHDAIMAFPEGYRTQVGER 187 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCC-SEEHHHHHHTTSTTCC-----H----HHHHHHHHHHTCHHHHHHSTTGGGCEESTT
T ss_pred cccCCHHHHhcceEEEecCCccC-cccHHHHHHhhcccCC-----H----HHHHHHHHHhCcHHHHHhccchhhhHhcCC
Confidence 642 45678899999987765 5699999998743211 1 11223333333 344567778876
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+. +||||||||++|||||+.+|+|||||||||+||+.++..|++.|+++. +++|+|+|||+++. +. .+|+++++
T Consensus 188 g~-~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~-~~-~aD~i~vl 261 (306)
T 3nh6_A 188 GL-KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLST-VV-NADQILVI 261 (306)
T ss_dssp SB-CCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHH-HH-TCSEEEEE
T ss_pred cC-CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHH-HH-cCCEEEEE
Confidence 54 699999999999999999999999999999999999999999999986 57999999999973 44 59999763
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.5e-46 Score=360.35 Aligned_cols=205 Identities=21% Similarity=0.335 Sum_probs=169.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++++|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 21 ~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT--SGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTBCC
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CeEEEECCEEc
Confidence 589999999772 357999999999999999999999999999999999998764 69999999875
Q ss_pred c-----hhhhcceeEEeecCCCCC--CCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 258 V-----QETFARVSGYCEQTDIHS--PQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 258 ~-----~~~~~~~~g~v~Q~~~~~--~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
. ...+++.++||+|++... +.+||+||+.++...... ......+..+.++++++.+++.+..++.++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG----- 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh-----
Confidence 4 233567799999976433 356999999986421100 001122335678899999999887777754
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeE--EEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTI--VCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~ti--i~~tH~~~~~i~~~fd~~l~ 403 (404)
+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||+++ ++...+|++++
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~ 235 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILL 235 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEE
Confidence 799999999999999999999999999999999999999999999997669999 99999997 57788999875
No 25
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4e-46 Score=351.52 Aligned_cols=196 Identities=21% Similarity=0.314 Sum_probs=167.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| ++ +|+||||++++ |+++|+||||||||||+|+|+|+.+|. +|+|.++|.++.
T Consensus 2 l~~~~l~~~y-------------~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRL-------------GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEE-------------TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEEEEEEe-------------CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECC
Confidence 5678888876 22 49999999999 999999999999999999999998764 699999998764
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...++.+|||+|++.+++.+||+||+.|+...+. .....+.++++++.+++.+..++..+ +|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE-----RVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC-----HHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC-----CchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHH
Confidence 2 2345679999999888899999999998643211 11225678899999999888777654 79999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|+++.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~ 199 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAV 199 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999754 999999999986 67889999875
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.1e-45 Score=348.06 Aligned_cols=196 Identities=22% Similarity=0.359 Sum_probs=165.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|.. ++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.
T Consensus 4 ~l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~------ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI--QGKIE------ 63 (253)
T ss_dssp EEEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS--EEEEE------
T ss_pred eEEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEE------
Confidence 3889999987720 356999999999999999999999999999999999998764 69997
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc-cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.++.++||+|++.+++.+||+||+.++....... ........+.++++++.+++.+..++.. .+||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHH
Confidence 2456899999988888999999999975322100 0112233567889999999988777764 37999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|+++.
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~ 201 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLL 201 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999876 999999999986 57789999875
No 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.4e-45 Score=351.55 Aligned_cols=208 Identities=21% Similarity=0.288 Sum_probs=168.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++++|+||||++++||+++|+||||||||||+|+|+|+....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 48999999977 24679999999999999999999999999999999999842223579999999875
Q ss_pred ch---hhh-cceeEEeecCCCCCCCCCHHHHHHHHhh-hh---cCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCC
Q 015591 258 VQ---ETF-ARVSGYCEQTDIHSPQITVEESVIFSAW-LR---LAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 258 ~~---~~~-~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~-~~---~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
.. ... ++.++|++|++.+++.+||+||+.+... .+ ........+..+.++++++.+++. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 32 122 3458999999988999999999987542 11 111122233356788999999996 46666532
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHh-cccccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEA-FDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~-fd~~l~ 403 (404)
.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++... +|++++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~ 237 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHV 237 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEE
Confidence 149999999999999999999999999999999999999999999998766999999999986 44454 898875
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.1e-45 Score=354.57 Aligned_cols=206 Identities=23% Similarity=0.299 Sum_probs=162.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+.. +++++|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~--~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT--GGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CCEEEECCEEc
Confidence 48999999976310 1256999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHc--CCCCCccccccCCCCCCC
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETI--ELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l--~l~~~~~~~vg~~~~~~L 331 (404)
.. ..+++.++||+|++.+++ .||+||+.++...... ...........++++++.+ ++....+... .+|
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~L 157 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETG-----NQL 157 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG-----TTS
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc-----CCC
Confidence 32 334667999999887766 6999999986421110 0000111223356677777 5655555543 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||++|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||+++ .+ ..+|+++.
T Consensus 158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~ 228 (271)
T 2ixe_A 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILF 228 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEE
Confidence 99999999999999999999999999999999999999999999864 4999999999986 33 45999875
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7.7e-45 Score=344.47 Aligned_cols=191 Identities=23% Similarity=0.336 Sum_probs=165.3
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++. ++|+|+||++++||+++|+||||||||||+|+|+|+.+| . |+|.++|.++.
T Consensus 5 l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 5 MQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGG
T ss_pred EEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECC
Confidence 778888862 489999999999999999999999999999999999875 5 99999998753
Q ss_pred ---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 259 ---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 259 ---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
...+++.++|++|++.+++.+||+||+.++... ... .+.++++++.+++.+..++.. .+|||||
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq 131 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD----KTR----TELLNDVAGALALDDKLGRST-----NQLSGGE 131 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS----TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHH
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc----CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHH
Confidence 234566799999998888889999999985311 111 456788999999988777764 3799999
Q ss_pred HHHHHHHHHHhcCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPS-------IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~-------iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|+++.
T Consensus 132 ~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~ 205 (249)
T 2qi9_C 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWL 205 (249)
T ss_dssp HHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999 99999999999999999999999999767999999999986 57789999875
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.3e-45 Score=345.93 Aligned_cols=200 Identities=24% Similarity=0.388 Sum_probs=161.8
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
.+++++||++.|+ .+++.+|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE--NGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEE
T ss_pred CceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEE
Confidence 4699999999762 12356999999999999999999999999999999999998764 6999999987
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCc-------cccccCC
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK-------DSLVGIP 326 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~vg~~ 326 (404)
+.. ..+++.++||+|++.+++ .||+||+.++.. ... .+.++++++.+++.+.. ++.++.+
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 532 345677999999887765 699999988531 111 23355666666665433 2333333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++. + +.+|++++
T Consensus 143 -~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~ 215 (247)
T 2ff7_A 143 -GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIV 215 (247)
T ss_dssp -TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEE
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEE
Confidence 35799999999999999999999999999999999999999999999995 69999999999873 4 46999875
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-44 Score=342.39 Aligned_cols=198 Identities=26% Similarity=0.404 Sum_probs=162.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+ +++++|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT--AGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS--BSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEhh
Confidence 67888888652 2356999999999999999999999999999999999998764 699999998753
Q ss_pred h---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcccc-------ccCCCC
Q 015591 259 Q---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL-------VGIPGV 328 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------vg~~~~ 328 (404)
. ..+++.++||+|++.+++ .||+||+.++.. .... .+.++++++.+++.+..+.. ++.+ +
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~-~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccC-c
Confidence 2 235667999999887766 599999988521 1111 23467788888887665443 2333 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||+++ .+ ..+|++++
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~ 209 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYF 209 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEE
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEE
Confidence 4799999999999999999999999999999999999999999999987 6999999999986 34 56999875
No 32
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.5e-44 Score=377.11 Aligned_cols=207 Identities=21% Similarity=0.280 Sum_probs=165.2
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. +++++|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.+||++
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~--~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE--RGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS--EEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC--CcEEEECCEE
Confidence 36999999997742 3457999999999999999999999999999999999998874 6999999998
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+.. ..+++.++||+|++.++ ..||+||+.++.......+...+.+...+++.++ .+++..|+.+++.+. +|||
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~~~~~~~-~LSg 482 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLF-SGTIKENLKWGREDATDDEIVEAAKIAQIHDFII--SLPEGYDSRVERGGR-NFSG 482 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCC-SEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHH--TSSSGGGCEECSSSC-SSCH
T ss_pred cccCCHHHHHhheEEECCCCcCc-CccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHH--hcccchhhHhcCCCC-CcCH
Confidence 643 45678899999987766 4599999988642110000000111111223333 355667888888754 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+++|++||||||||+||+.+++.+++.|+++. +|+|+|++||+++. ...+|++++
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~v 549 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILV 549 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEE
Confidence 99999999999999999999999999999999999999999975 59999999999963 468999875
No 33
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.9e-44 Score=377.71 Aligned_cols=200 Identities=28% Similarity=0.378 Sum_probs=164.5
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. +++++|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.+||++
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~--~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT--SGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS--EEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC--CcEEEECCEE
Confidence 46999999997742 2456999999999999999999999999999999999998874 6999999987
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCC
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIP 326 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~ 326 (404)
+.. ..+++.++||+|++.+++ .||+||+.++... ... +.+.+.++.. .+++..|+.+|+.
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPT-----ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGCSS-----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCc-ccHHHHHhcCCCC-----CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 542 456778999999877665 5999999986321 111 1223333333 3455678888877
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|. +||||||||++|||||+++|++|+|||||||||+.++..+.+.++++. +|+|+|++||+++. + ..+|++++
T Consensus 475 g~-~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~ 547 (578)
T 4a82_A 475 GV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVV 547 (578)
T ss_dssp GT-TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEE
T ss_pred CC-cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEE
Confidence 54 699999999999999999999999999999999999999999999885 58999999999974 3 56999875
No 34
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.7e-43 Score=337.74 Aligned_cols=194 Identities=20% Similarity=0.214 Sum_probs=161.3
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. ...+++|+|+||+++ ||+++|+||||||||||+|+|+|+. |. +|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY--SGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC--EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC--CcEEEECCEECc
Confidence 6788999877310 011569999999999 9999999999999999999999988 74 699999998753
Q ss_pred hhhhcceeE-EeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCHHHH
Q 015591 259 QETFARVSG-YCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~~~~~~~~g-~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqr 336 (404)
....++.++ |++|++.+ .+||+||+.+..... . ...+.++++++.+++. +..++.. .+||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~----~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---G----LDRDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---C----CCHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---c----hHHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 211256799 99998765 899999999875432 1 1134578899999998 7777764 37999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcc-cccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFD-EVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd-~~l~ 403 (404)
||++|||||+.+|++|||||||+|||+.++..+++.|+++++ |||++||+++ ++...+| +++.
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~ 198 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYF 198 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEE
Confidence 999999999999999999999999999999999999998753 9999999986 5677899 8764
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=8e-44 Score=339.67 Aligned_cols=199 Identities=26% Similarity=0.399 Sum_probs=159.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+.. ..+++|+||||++++||+++|+||||||||||+++|+|+.++ +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC---CeEEEECCEEh
Confidence 48999999977310 114699999999999999999999999999999999998763 59999999875
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC-------CCCccccccCCC
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-------DGIKDSLVGIPG 327 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~vg~~~ 327 (404)
.. ..+++.++||+|++.+++ .||+||+.++.. ... .+.+.++++.+++ .+..++.++.+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 32 345677999999887765 699999998531 111 1234455555554 33445555544
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++. + +.+|+++.
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~-~-~~~d~i~~ 225 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLST-I-SSAESIIL 225 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-S-TTCSEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHH-H-HhCCEEEE
Confidence 34799999999999999999999999999999999999999999999986 48999999999873 3 46999875
No 36
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3e-43 Score=372.17 Aligned_cols=203 Identities=27% Similarity=0.391 Sum_probs=167.5
Q ss_pred E-EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 178 T-VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 178 ~-i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
. ++++||+|.|+.. .++++|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.+||++
T Consensus 340 ~~i~~~~v~~~y~~~----------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~--~G~i~~~g~~ 407 (595)
T 2yl4_A 340 GALEFKNVHFAYPAR----------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA--SGTISLDGHD 407 (595)
T ss_dssp CCEEEEEEEEECSSC----------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS--EEEEEETTEE
T ss_pred CeEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CcEEEECCEE
Confidence 5 9999999987420 1246999999999999999999999999999999999998874 6999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC-------CCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-------DGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~vg~~ 326 (404)
+. ...+++.++||+|++.+++ .||+||+.++.... ... .++.++++++.+++ ++..|+.+|+.
T Consensus 408 i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~ 480 (595)
T 2yl4_A 408 IRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSV----TAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 480 (595)
T ss_dssp TTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTS----CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS
T ss_pred hhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--ccc----CHHHHHHHHHHcCCHHHHHhCcccccccccCC
Confidence 64 2456778999999887765 69999999864211 001 12445666766654 45578888877
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
| .+||||||||++|||||+++|++||||||||+||+.+++.+.+.|+++.+ |+|+|++||+++. + +.+|++++
T Consensus 481 ~-~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~ 553 (595)
T 2yl4_A 481 G-VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST-I-KNANMVAV 553 (595)
T ss_dssp S-CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH-H-HHSSEEEE
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-H-HcCCEEEE
Confidence 5 46999999999999999999999999999999999999999999999875 8999999999863 4 56999875
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.7e-43 Score=370.56 Aligned_cols=201 Identities=24% Similarity=0.313 Sum_probs=166.0
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. +++++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.+||++
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~--~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD--SGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CCEEEECCEE
Confidence 35999999998741 1256999999999999999999999999999999999998874 5999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-------CCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-------GIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~vg~~ 326 (404)
+. ...+++.++||+|++.+++ .||+||+.++.. +... .+.++++++.+++. +..|+.+|+.
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE----GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC----CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 53 3456778999999887665 599999998631 1111 23355666666553 3567778876
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+ .+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +|+|+|++||+++. .+.+|++++
T Consensus 478 ~-~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~--~~~~d~i~~ 550 (582)
T 3b5x_A 478 G-TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLST--IEQADEILV 550 (582)
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEE
Confidence 5 4699999999999999999999999999999999999999999999986 49999999999863 457999875
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.3e-43 Score=370.10 Aligned_cols=200 Identities=24% Similarity=0.329 Sum_probs=165.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|.|+. +++++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.+||+++
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~--~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID--EGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS--EEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC--CCeEEECCEEc
Confidence 5999999997731 1256999999999999999999999999999999999998874 69999999876
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-------CCccccccCCC
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-------GIKDSLVGIPG 327 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~vg~~~ 327 (404)
.. ..+++.++||+|++.+++ .||+||+.++.. +... .+.++++++.+++. +..|+.+|+.+
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~ 478 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENG 478 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTS
T ss_pred cccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCC
Confidence 42 456778999999887765 599999998631 1111 23355666666553 45677888775
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +|+|+|++||+++. + +.+|++++
T Consensus 479 -~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~-~-~~~d~i~~ 550 (582)
T 3b60_A 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST-I-EQADEIVV 550 (582)
T ss_dssp -CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGG-T-TTCSEEEE
T ss_pred -CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEeccHHH-H-HhCCEEEE
Confidence 4699999999999999999999999999999999999999999999987 49999999999973 3 57999875
No 39
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.3e-44 Score=376.60 Aligned_cols=206 Identities=26% Similarity=0.367 Sum_probs=163.0
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+ +++++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.+||.+
T Consensus 353 ~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~--~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD--RGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS--EEEEEETTEE
T ss_pred CeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC--CeEEEECCEE
Confidence 3599999999773 2356999999999999999999999999999999999998874 6999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+++.++||+|++.++ ..||+||+.++.......+..+..+....++.++ .+++..|+.+|+.|. +|||
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~~~~~g~-~LSg 494 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILF-STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIK--HLPEGYETVLTDNGE-DLSQ 494 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCC-SSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHH--TSTTGGGCBCHHHHT-TSCH
T ss_pred hhhCCHHHHHhceEEEeCCCccc-cccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHH--hccccccchhcCCCC-CCCH
Confidence 54 345678899999987665 5699999998632111000000000011223333 345566777776654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+++|++||||||||+||+.++..+.+.|+++. +|+|+|++||+++. + ..+|++++
T Consensus 495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~ 561 (598)
T 3qf4_B 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIV 561 (598)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEE
Confidence 99999999999999999999999999999999999999999986 69999999999984 4 55999875
No 40
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.3e-43 Score=397.87 Aligned_cols=209 Identities=25% Similarity=0.353 Sum_probs=171.4
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|.|+.. .++++|+|+||++++||.+||+||||||||||+++|.|+++| .+|+|.+||++
T Consensus 414 g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~--~~G~I~idG~~ 481 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV--LKGKITIDGVD 481 (1321)
T ss_dssp CCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CcEEEEEeeeeCCCC----------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc--ccCcccCCCcc
Confidence 369999999988531 346799999999999999999999999999999999999887 46999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+|+.++||+|++. +++.||+|||.|+......+++.++.+...+++.++ .|++..|+.+|+.|. +|||
T Consensus 482 i~~~~~~~lr~~i~~v~Q~~~-Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~--~lp~G~~T~vGe~G~-~LSG 557 (1321)
T 4f4c_A 482 VRDINLEFLRKNVAVVSQEPA-LFNCTIEENISLGKEGITREEMVAACKMANAEKFIK--TLPNGYNTLVGDRGT-QLSG 557 (1321)
T ss_dssp TTTSCHHHHHHHEEEECSSCC-CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHH--HSTTTTSSEESSSSC-CCCH
T ss_pred chhccHHHHhhcccccCCcce-eeCCchhHHHhhhcccchHHHHHHHHHHccchhHHH--cCCCCCccEecCCCC-CCCH
Confidence 54 3567889999999766 566799999999742111111111111222233444 367889999999886 5999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++||||++++|+|||||||||+||+++++.|.+.|+++. +|+|+|+|||+++ ....+|+++++
T Consensus 558 GQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl 625 (1321)
T 4f4c_A 558 GQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISC 625 (1321)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEE
T ss_pred HHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEe
Confidence 99999999999999999999999999999999999999999986 6999999999998 46789998863
No 41
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.4e-42 Score=322.52 Aligned_cols=188 Identities=23% Similarity=0.373 Sum_probs=148.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+. +++++|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC--ccEEEECC---
Confidence 4899999987631 2356999999999999999999999999999999999998764 69999998
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-------CCccccccCCCCCC
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-------GIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~vg~~~~~~ 330 (404)
.++|++|++.+++. ||+||+.++... .. ...++.++.+++. ...++.++.+ ..+
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVSY------DE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSCC------CH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCCc------Ch----HHHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 38999998877764 999999985311 11 1122233333332 2233344443 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA-VKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~-l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||+++ .+ ..+|+++.
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~ 201 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILI 201 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEE
Confidence 999999999999999999999999999999999999999997 45554 4899999999986 34 46999875
No 42
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.3e-43 Score=350.11 Aligned_cols=199 Identities=22% Similarity=0.273 Sum_probs=163.1
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||++.|+. +++.+|+||||+|++||+++|+|||||||||||++|+|+.+ .+|+|.++|++
T Consensus 18 ~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 35999999998731 34579999999999999999999999999999999999875 46999999987
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccc-------cCC
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLV-------GIP 326 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~v-------g~~ 326 (404)
+.. ..+++.++||+|++.+++ +||+||+.+.. .. ..+.++++++.++|.+..++.. +..
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 542 345678999999887776 69999997431 11 1345678888888876555442 222
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+ ..|||||||||+|||||+.+|++|||||||||||+..+..+++.|+++. .++|+|++|||++ ....+|+++++
T Consensus 153 g-~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl 226 (390)
T 3gd7_A 153 G-CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVI 226 (390)
T ss_dssp T-TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEE
T ss_pred c-ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEE
Confidence 2 2499999999999999999999999999999999999999999999864 5899999999975 45669998763
No 43
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=4.3e-42 Score=323.41 Aligned_cols=190 Identities=23% Similarity=0.345 Sum_probs=147.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|.. +++++|+||||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE--EEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECC----
Confidence 788999987631 135699999999999999999999999999999999999876 579999998
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHH---HHHHcCCCC-CccccccCCCCCCCCHH
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNE---VLETIELDG-IKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~l~l~~-~~~~~vg~~~~~~LSgG 334 (404)
.++||+|++. ++.+||+||+.++... .. +..+.+.+ +.+.+++.+ ..++.++.+ +.+||||
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~~------~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LSgG 131 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQL------EE-PYYRSVIQACALLPDLEILPSGDRTEIGEK-GVNLSGG 131 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSCC------CT-THHHHHHHHTTCHHHHTTSTTGGGSEESTT-SBCCCHH
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCcccc------CH-HHHHHHHHHHhhHHHHHhccccccccccCC-CCCCCHH
Confidence 3899999865 5688999999986421 11 11111111 122233221 122233333 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK---NVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~---~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|||||||+|||+.++..+++.|. ++. +|+|||++||+++. + ..+|+++.
T Consensus 132 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~ 200 (237)
T 2cbz_A 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIV 200 (237)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEE
Confidence 9999999999999999999999999999999999999995 443 58999999999974 3 57999875
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.8e-42 Score=392.50 Aligned_cols=204 Identities=26% Similarity=0.353 Sum_probs=170.1
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|.|+.. .+.++|+||||+|+|||.+||+|+||||||||+++|.|+++|. +|+|.+||.|
T Consensus 1075 g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~--~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL--GGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS--SSEEEETTEE
T ss_pred CeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC--CCEEEECCEE
Confidence 469999999988531 2356999999999999999999999999999999999998874 5999999998
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~ 326 (404)
+. ...+|+.++||+|++.+ ++.|++|||.|+.. +++.+. +.+.++++.. .+++..|+.+|+.
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~L-F~gTIreNI~~gld---~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTL-FDCSIAENIIYGLD---PSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCC-CSEEHHHHHSSSSC---TTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred hhhCCHHHHHhheEEECCCCEe-eCccHHHHHhccCC---CCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 64 36788999999997765 56799999998632 112221 2233333333 4577889999988
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|. +||||||||++|||||+++|+|||||||||+||+++++.|++.|+++. +|+|+|+|+|+++. ...+|+|+++
T Consensus 1215 G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vl 1288 (1321)
T 4f4c_A 1215 GT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVV 1288 (1321)
T ss_dssp SC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEE
T ss_pred Cc-ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEE
Confidence 75 699999999999999999999999999999999999999999999875 58999999999984 6679999864
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=9e-41 Score=379.33 Aligned_cols=209 Identities=25% Similarity=0.386 Sum_probs=167.0
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+.. .+.++|+||||++++||++||+||||||||||+++|+|+++|. +|+|.+||.+
T Consensus 386 g~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~--~G~i~i~g~~ 453 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL--DGMVSIDGQD 453 (1284)
T ss_dssp CCEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS--EEEEEETTEE
T ss_pred CeEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEE
Confidence 459999999988421 2346999999999999999999999999999999999998874 6999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+++.+|||+|++.+++ .||+||+.++.......++..+.+...+++.++ .+++..|+.+|+.|. +|||
T Consensus 454 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~~g~-~LSg 529 (1284)
T 3g5u_A 454 IRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFIM--KLPHQFDTLVGERGA-QLSG 529 (1284)
T ss_dssp GGGSCHHHHHHHEEEECSSCCCCS-SCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHH--HSTTGGGCCCSSSSC-SSCH
T ss_pred HHhCCHHHHHhheEEEcCCCccCC-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH--hccccccccccCCCC-ccCH
Confidence 53 3456788999999887664 599999999742111011111111122234444 355677899998765 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+++|+|||||||||+||+++++.+.+.++++. +|+|+|+|||+++. + ..+|+++++
T Consensus 530 Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl 597 (1284)
T 3g5u_A 530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGF 597 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEE
Confidence 99999999999999999999999999999999999999998875 59999999999873 4 559998864
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.1e-40 Score=316.45 Aligned_cols=183 Identities=23% Similarity=0.369 Sum_probs=134.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++. .+++|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|
T Consensus 40 ~l~~~~l~~~---------------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLL---------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG--- 99 (290)
T ss_dssp -------------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE--EEEEEECCS---
T ss_pred eEEEEEEEEc---------------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECC---
Confidence 4788888873 14599999999999999999999999999999999999876 579999988
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-------CCccccccCCCCCC
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-------GIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~vg~~~~~~ 330 (404)
.++|++|++.+++ .||+||+. +. .. .. ..+++.++.+++. ...++.++.+ +.+
T Consensus 100 -------~i~~v~Q~~~l~~-~tv~enl~-~~--~~----~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMP-GTIKENII-GV--SY----DE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 159 (290)
T ss_dssp -------CEEEECSSCCCCS-SBHHHHHH-TT--CC----CH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCc-ccHHHHhh-Cc--cc----ch----HHHHHHHHHhChHHHHHhccccccchhcCc-cCc
Confidence 3899999887766 59999998 32 11 11 1122333333332 2223334333 347
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV-KNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l-~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++ .+ ..+|+++.
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~ 230 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILI 230 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEE
Confidence 9999999999999999999999999999999999999999974 5554 5899999999985 34 56999875
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.3e-39 Score=369.71 Aligned_cols=209 Identities=24% Similarity=0.361 Sum_probs=166.5
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+.. .+.++|+||||++++||++||+||||||||||+++|+|+++|. +|+|.+||++
T Consensus 1029 g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~--~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM--AGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS--EEEEESSSSC
T ss_pred CcEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCEE
Confidence 359999999988421 1246999999999999999999999999999999999998874 6999999998
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc--cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
+. ...+++.++||+|++.+ +..||+||+.++...+... ++..+.+...+++.++ .+++..|+.+|+.|. +|
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l-~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~--~l~~gldt~vge~G~-~L 1172 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPIL-FDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID--SLPDKYNTRVGDKGT-QL 1172 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCC-CSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHS--STTTGGGCBCSTTSC-SS
T ss_pred cccCCHHHHHhceEEECCCCcc-ccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHH--hCccccccccCCCCC-cc
Confidence 54 34567889999998754 5679999998864221100 0001111112223333 456778999998764 69
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||++|||||+++|+||||||||||||+.+++.|.+.|+++. +|+|+|++|||++. + ..||+++++
T Consensus 1173 SgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl 1242 (1284)
T 3g5u_A 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVI 1242 (1284)
T ss_dssp CHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEE
Confidence 9999999999999999999999999999999999999999998864 69999999999984 4 569998863
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.4e-37 Score=320.59 Aligned_cols=191 Identities=23% Similarity=0.275 Sum_probs=159.1
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|+++.|. + ..|+++|+++++||+++|+||||||||||+++|+|+.+|. +|+|.+++.
T Consensus 268 ~~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~~~- 330 (538)
T 3ozx_A 268 TKMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD--EGSVTPEKQ- 330 (538)
T ss_dssp EEEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--BCCEESSCC-
T ss_pred ceEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCe-
Confidence 3577888877652 2 3578889999999999999999999999999999998874 599987653
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.++|++|+....+.+||+||+.+..... .. .....++++++.+++.+..++.++ +||||||
T Consensus 331 --------~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~ 391 (538)
T 3ozx_A 331 --------ILSYKPQRIFPNYDGTVQQYLENASKDA----LS--TSSWFFEEVTKRLNLHRLLESNVN-----DLSGGEL 391 (538)
T ss_dssp --------CEEEECSSCCCCCSSBHHHHHHHHCSST----TC--TTSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHH
T ss_pred --------eeEeechhcccccCCCHHHHHHHhhhhc----cc--hhHHHHHHHHHHcCCHHHhcCChh-----hCCHHHH
Confidence 4789999876667899999998742111 00 112346788888999887777754 7999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||++ ++..+||+++++
T Consensus 392 QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl 459 (538)
T 3ozx_A 392 QKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVF 459 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999975 5999999999997 688899999863
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.3e-37 Score=323.38 Aligned_cols=189 Identities=24% Similarity=0.294 Sum_probs=159.2
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|+++.|. + ..|+++||++++||++||+||||||||||+++|+|+.+|. +|+|.+
T Consensus 356 ~~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~---- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKVEW---- 415 (607)
T ss_dssp EEEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BSCCCC----
T ss_pred eEEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEE----
Confidence 4588888887652 2 2689999999999999999999999999999999998764 598865
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.+.++|++|+....+.+||.|++........ ...+.++++++.+++.+..++.++ +||||||
T Consensus 416 ------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~ 477 (607)
T 3bk7_A 416 ------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGEL 477 (607)
T ss_dssp ------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHH
T ss_pred ------eeEEEEEecCccCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCChh-----hCCHHHH
Confidence 2458999998777788999998876411110 113457889999999888887754 7999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++ +.|+|||++|||++ .+...+|+++++
T Consensus 478 QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl 545 (607)
T 3bk7_A 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVF 545 (607)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999986 46999999999986 678899998763
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7.5e-37 Score=319.24 Aligned_cols=189 Identities=24% Similarity=0.299 Sum_probs=157.8
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|+++.|. + ..|+++||++++||++||+||||||||||+++|+|+.+|. +|+|.+
T Consensus 286 ~~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~i~~---- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKIEW---- 345 (538)
T ss_dssp EEEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BCCCCC----
T ss_pred eEEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEE----
Confidence 4588889987662 2 3689999999999999999999999999999999998764 598875
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
...++|++|+....+.+||.|++........ ...+.++++++.+++.+..++.++ .||||||
T Consensus 346 ------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~ 407 (538)
T 1yqt_A 346 ------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVN-----ELSGGEL 407 (538)
T ss_dssp ------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHH
T ss_pred ------CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChh-----hCCHHHH
Confidence 2358999998777788999998865311110 012456788888898777777654 7999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||+|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||++ ++...||+++++
T Consensus 408 qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl 475 (538)
T 1yqt_A 408 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVF 475 (538)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999874 5999999999986 688899998763
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2e-36 Score=316.04 Aligned_cols=178 Identities=22% Similarity=0.296 Sum_probs=144.7
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEE---------EECCccCch---h--hhcceeEEee
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEI---------KIGGYPKVQ---E--TFARVSGYCE 270 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I---------~i~G~~~~~---~--~~~~~~g~v~ 270 (404)
.+|+|+| ++++||++||+||||||||||+|+|+|+.+|. +|++ .++|.+... . ..+..+++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~--~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN--LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKP 112 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEEC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhh
Confidence 4899999 99999999999999999999999999988764 4774 356654321 1 1123578888
Q ss_pred cCCCCCC---CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc
Q 015591 271 QTDIHSP---QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA 347 (404)
Q Consensus 271 Q~~~~~~---~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~ 347 (404)
|.....+ ..|+.|++... +. .++++++++.+++.+..++.++ +|||||||||+|||||+.
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~-------~~-----~~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKA-------DE-----TGKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLR 175 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHH-------CS-----SSCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred hhhhhcchhhhccHHHHHhhh-------hH-----HHHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhc
Confidence 8543322 24899987531 00 1236789999999888887754 799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|++|||||||++||+.++..+++.|++++++|.|||++|||++ .+...||++++
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~v 230 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHV 230 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999878999999999987 68889999875
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2e-36 Score=319.63 Aligned_cols=178 Identities=23% Similarity=0.302 Sum_probs=144.7
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEE---------EECCccCch---h--hhcceeEEee
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEI---------KIGGYPKVQ---E--TFARVSGYCE 270 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I---------~i~G~~~~~---~--~~~~~~g~v~ 270 (404)
.+|+|+| .+++||+++|+||||||||||+|+|+|+.+|. +|++ .++|.+... . ..+..+++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~--~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN--LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC--TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC--CCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 4899999 99999999999999999999999999988764 4775 356654321 0 1123467888
Q ss_pred cCCCCCC---CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc
Q 015591 271 QTDIHSP---QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA 347 (404)
Q Consensus 271 Q~~~~~~---~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~ 347 (404)
|.....+ ..||+|++... .. .+.++++++.++|.+..++.++ +||||||||++|||||+.
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLR 245 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred chhhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhc
Confidence 7532222 24999998641 00 1236788999999988888754 799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|++|||||||++||+.++..+++.|++++++|.|||++|||++ .+...+|++++
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~v 300 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHV 300 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEE
Confidence 99999999999999999999999999999877999999999986 67788999865
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-35 Score=307.86 Aligned_cols=176 Identities=24% Similarity=0.266 Sum_probs=146.8
Q ss_pred eeeeeeeeeeeeCC-----cEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCC
Q 015591 204 LRLLYDVTGSLRPG-----VLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQ 278 (404)
Q Consensus 204 ~~iL~~vs~~i~~G-----e~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~ 278 (404)
..+++++||++++| |+++|+||||||||||+++|+|+.+|. +|+. . .+..++|++|+....+.
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~----~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------I----PKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------C----CSCCEEEECSSCCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCcC------c----cCCcEEEecccccccCC
Confidence 45789999999998 789999999999999999999998874 4752 1 13458999998766677
Q ss_pred CCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 015591 279 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPt 358 (404)
.||+|++.... +. .. ...+.++++++.+++.+..++.+ .+|||||||||+|||||+.+|++|||||||
T Consensus 428 ~tv~e~~~~~~--~~--~~---~~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 428 GTVRQLFFKKI--RG--QF---LNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp SBHHHHHHHHC--SS--TT---TSHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred ccHHHHHHHHh--hc--cc---ccHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 89999875422 11 11 11245678899999998888875 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 359 TGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 359 sgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||+.++..+++.|+++++ .|+|||++|||++ ++..++|+++++
T Consensus 496 ~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl 541 (608)
T 3j16_B 496 AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVF 541 (608)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99999999999999999864 5999999999997 688899999864
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=8.2e-35 Score=311.65 Aligned_cols=192 Identities=21% Similarity=0.292 Sum_probs=123.5
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHH---------------------HHHhCCCCCCc-----eeeEEEECCccC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLL---------------------DVLAGRKTTGS-----MEGEIKIGGYPK 257 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl---------------------~~L~g~~~~~~-----~~G~I~i~G~~~ 257 (404)
..+|+||||+|++||++||+||||||||||+ +++.|+..++. ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 78888766541 136677777653
Q ss_pred chhhhcceeEEeecCCC-------------------CCCCCCHHHHHHHHhhhhcCccCChh-----hHHHHHHHHHHHc
Q 015591 258 VQETFARVSGYCEQTDI-------------------HSPQITVEESVIFSAWLRLAPEINSK-----TKAEFVNEVLETI 313 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~-------------------~~~~~Tv~e~l~~~~~~~~~~~~~~~-----~~~~~~~~~l~~l 313 (404)
.. ..++.+++++|... .++.+||+||+.+............. +......++++.+
T Consensus 111 ~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 111 SR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 21 12334455554322 23568999999875322111100000 0001112457888
Q ss_pred CCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 314 ELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 314 ~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~--iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
+|.+. .++.++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||+||||+
T Consensus 190 gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 190 GLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp TCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 88764 466643 699999999999999999998 9999999999999999999999999988899999999998
Q ss_pred CHHHHHhcccccc
Q 015591 391 SIDIFEAFDEVKQ 403 (404)
Q Consensus 391 ~~~i~~~fd~~l~ 403 (404)
+ ....+|++++
T Consensus 265 ~--~~~~~d~ii~ 275 (670)
T 3ux8_A 265 D--TMLAADYLID 275 (670)
T ss_dssp H--HHHHCSEEEE
T ss_pred H--HHhhCCEEEE
Confidence 6 3556999875
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.8e-33 Score=307.62 Aligned_cols=181 Identities=20% Similarity=0.256 Sum_probs=148.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+...|+++.| +++.+|+|+||++++|++++|+||||||||||+|+|+| |+| +|.+.
T Consensus 435 ~L~~~~ls~~y-------------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAY-------------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEE-------------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 47777888876 34679999999999999999999999999999999995 332 34332
Q ss_pred chhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCHHH
Q 015591 258 VQETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgGq 335 (404)
. . ...++|++|+. ..++.+||.||+.+ ... .. .+.++++++.+++. +..++.++ +|||||
T Consensus 492 ~-~--~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGq 553 (986)
T 2iw3_A 492 Q-E--ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGW 553 (986)
T ss_dssp T-T--TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHH
T ss_pred c-c--ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHH
Confidence 1 1 12368998864 56788999999976 111 11 45678899999995 55666654 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|||++ .+...+|+++.
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~ 617 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIIN 617 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999987 5899999999986 67889999875
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.8e-33 Score=307.61 Aligned_cols=197 Identities=22% Similarity=0.260 Sum_probs=149.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|++|.|+ .+++++|+|+||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.
T Consensus 671 mL~v~nLs~~Y~-----------g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~--sG~I~~~~~-- 735 (986)
T 2iw3_A 671 IVKVTNMEFQYP-----------GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT--SGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEECCT-----------TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS--EEEEEECTT--
T ss_pred eEEEEeeEEEeC-----------CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEcCc--
Confidence 589999998763 11256899999999999999999999999999999999998764 699999863
Q ss_pred chhhhcceeEEeecCCCC----CCCCCHHHHHHHHhhhhc------------C---------------------------
Q 015591 258 VQETFARVSGYCEQTDIH----SPQITVEESVIFSAWLRL------------A--------------------------- 294 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~----~~~~Tv~e~l~~~~~~~~------------~--------------------------- 294 (404)
..++|++|+..+ ....|+++++.+...... .
T Consensus 736 ------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~ 809 (986)
T 2iw3_A 736 ------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRR 809 (986)
T ss_dssp ------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEE
T ss_pred ------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhh
Confidence 136788775321 123577777654210000 0
Q ss_pred -------------------------cc--------C--------------------------ChhhHHHHHHHHHHHcCC
Q 015591 295 -------------------------PE--------I--------------------------NSKTKAEFVNEVLETIEL 315 (404)
Q Consensus 295 -------------------------~~--------~--------------------------~~~~~~~~~~~~l~~l~l 315 (404)
.. . ......+.++++++.+++
T Consensus 810 ~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL 889 (986)
T 2iw3_A 810 KFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGL 889 (986)
T ss_dssp EETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred hhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCC
Confidence 00 0 000113457889999999
Q ss_pred CC-C-ccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH
Q 015591 316 DG-I-KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSID 393 (404)
Q Consensus 316 ~~-~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~ 393 (404)
.+ . .+..+ .+||||||||++|||+|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++||+++ .
T Consensus 890 ~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~ 960 (986)
T 2iw3_A 890 DPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-F 960 (986)
T ss_dssp CHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-H
T ss_pred CchhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-H
Confidence 74 2 35443 379999999999999999999999999999999999999999888754 679999999986 5
Q ss_pred HHHhccccccC
Q 015591 394 IFEAFDEVKQF 404 (404)
Q Consensus 394 i~~~fd~~l~~ 404 (404)
+...||+++.+
T Consensus 961 v~~l~DrVivL 971 (986)
T 2iw3_A 961 TKNLTEEVWAV 971 (986)
T ss_dssp HTTTCCEEECC
T ss_pred HHHhCCEEEEE
Confidence 77789998764
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=294.96 Aligned_cols=180 Identities=21% Similarity=0.301 Sum_probs=135.3
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE-----------ECCccCch---hhhccee--EE
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK-----------IGGYPKVQ---ETFARVS--GY 268 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~-----------i~G~~~~~---~~~~~~~--g~ 268 (404)
..|++++ .+++||++||+||||||||||||+|+|+.+|. +|+|. +.|.+... ....+.+ .+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~--~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN--LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC--CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 3677777 68999999999999999999999999998875 48872 33332110 0111111 22
Q ss_pred eecCCCC------CCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHH
Q 015591 269 CEQTDIH------SPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIA 342 (404)
Q Consensus 269 v~Q~~~~------~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IA 342 (404)
.+|.... .+..++.+++.... ....+.++++++.+++.+..++.+ .+||||||||++||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~----------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM----------EKSPEDVKRYIKILQLENVLKRDI-----EKLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC----------CSCHHHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh----------hhHHHHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHHHHH
Confidence 2332111 11234555543210 111346788999999998888775 47999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 343 VELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 343 raL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||+.+|++|||||||++||+.++..+.+.|++++++|+|||++||+++ ++...+|++++
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~v 293 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCI 293 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999878999999999997 78889999875
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.98 E-value=3.1e-33 Score=291.56 Aligned_cols=168 Identities=21% Similarity=0.275 Sum_probs=131.3
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEE-----------EECCccCch---hhhc--ceeE----EeecCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEI-----------KIGGYPKVQ---ETFA--RVSG----YCEQTD 273 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I-----------~i~G~~~~~---~~~~--~~~g----~v~Q~~ 273 (404)
.++||++||+||||||||||+|+|+|+..|. +|+| .++|.++.. .... ..+. |+.+.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~--~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN--FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC--TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 3589999999999999999999999998875 4887 566765421 0011 1122 333322
Q ss_pred CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 015591 274 IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 353 (404)
Q Consensus 274 ~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLl 353 (404)
. +...|++|++.... ..+.++++++.+++.+..++.++ +|||||||||+|||||+.+|++||
T Consensus 100 ~-~~~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 100 K-FLKGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp T-TCCSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred h-hccCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2 23358887654210 01235788999999888888764 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 354 MDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 354 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++||+.++..+.+.|+++++ |+|||++||+++ ++...+|++.+
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~v 209 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHI 209 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEE
T ss_pred EECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEE
Confidence 9999999999999999999999975 999999999996 78889999865
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=3.7e-32 Score=291.04 Aligned_cols=181 Identities=26% Similarity=0.352 Sum_probs=132.0
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh----------------------CCCCCCceeeEEEECCccCchhh
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA----------------------GRKTTGSMEGEIKIGGYPKVQET 261 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~----------------------g~~~~~~~~G~I~i~G~~~~~~~ 261 (404)
..+|+||||+|++||++||+||||||||||+++|. |+.. ..|.|.++|.+.....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~---~~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH---LDKVIDIDQSPIGRTP 411 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG---CSEEEECCSSCSCSST
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc---cCceeEeccccCCCCC
Confidence 35899999999999999999999999999998754 2222 2367888876542100
Q ss_pred -----------------h---------------------------cceeEEeecCCCCC---------------------
Q 015591 262 -----------------F---------------------------ARVSGYCEQTDIHS--------------------- 276 (404)
Q Consensus 262 -----------------~---------------------------~~~~g~v~Q~~~~~--------------------- 276 (404)
+ .+..|+++|+..++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (670)
T 3ux8_A 412 RSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLE 491 (670)
T ss_dssp TCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHT
T ss_pred CcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhh
Confidence 0 00113333322221
Q ss_pred -----------CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHHHHHHHHHHH
Q 015591 277 -----------PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQRKRLTIAVE 344 (404)
Q Consensus 277 -----------~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqRl~IAra 344 (404)
..+||+||+.|.... ...+.+.+.++.+++.. ..+... .+|||||||||+||||
T Consensus 492 ~~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 492 VTYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAE 557 (670)
T ss_dssp CCBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHH
T ss_pred eeecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCc-----hhCCHHHHHHHHHHHH
Confidence 147999999875321 12234567778888864 234443 4799999999999999
Q ss_pred HhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 345 LVANP---SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 345 L~~~p---~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+.+| ++|||||||+|||+.++..+++.|++++++|+|||+||||++ ....+|++++
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~ 617 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIID 617 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEE
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--HHHhCCEEEE
Confidence 99887 599999999999999999999999999878999999999986 3467999875
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1.1e-29 Score=275.10 Aligned_cols=94 Identities=26% Similarity=0.347 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 015591 304 EFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVAN---PSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379 (404)
Q Consensus 304 ~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~---p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~ 379 (404)
+.+.++++.++|... .++.+ ..|||||||||+||++|+.+ |++|||||||+|||+.++..+++.|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPA-----TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCCc-----ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 467889999999763 34443 47999999999999999996 6999999999999999999999999999888
Q ss_pred CCeEEEEecCCCHHHHHhccccccC
Q 015591 380 GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 380 g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|.|||+++|+++ ++ ..+|+++.+
T Consensus 783 G~tVIvisHdl~-~i-~~aDrii~L 805 (842)
T 2vf7_A 783 GNTVIAVEHKMQ-VV-AASDWVLDI 805 (842)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEE
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEE
Confidence 999999999986 45 889998753
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=2.2e-29 Score=273.71 Aligned_cols=182 Identities=29% Similarity=0.386 Sum_probs=136.3
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh-C-C--------CCCCc---eee------EEEECCccCch--h----
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA-G-R--------KTTGS---MEG------EIKIGGYPKVQ--E---- 260 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~-g-~--------~~~~~---~~G------~I~i~G~~~~~--~---- 260 (404)
.|+|||++|++|+++||+|+||||||||+++|. | + ..++. ..| .|.++|.++.. .
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999853 2 1 12221 224 58888876421 0
Q ss_pred -------h---------hcceeEEeecCCCCC----------------------C-------------------------
Q 015591 261 -------T---------FARVSGYCEQTDIHS----------------------P------------------------- 277 (404)
Q Consensus 261 -------~---------~~~~~g~v~Q~~~~~----------------------~------------------------- 277 (404)
. ..+.+||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 0 013356776642211 1
Q ss_pred -------CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 278 -------QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 278 -------~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
.+|+.|++.|... . .+.+.+.++++.++|.. ..++.+ ..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~---~~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I---PKIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C---HHHHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c---hhHHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCC
Confidence 3577788776421 1 11233567899999976 455554 479999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 350 ---SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 350 ---~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||||+|||+.++..+++.|++++++|.|||++||+++ . ...+|+++.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~-i~~aDrIiv 919 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIID 919 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-H-HHhCCEEEE
Confidence 999999999999999999999999999888999999999986 3 468999875
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=8.5e-29 Score=270.32 Aligned_cols=184 Identities=26% Similarity=0.409 Sum_probs=134.5
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHH---------HHHhCCCCCC----cee------eEEEECCccCchh-----
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLL---------DVLAGRKTTG----SME------GEIKIGGYPKVQE----- 260 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl---------~~L~g~~~~~----~~~------G~I~i~G~~~~~~----- 260 (404)
..|+|||++|++|++++|+|+||||||||+ +++.+...+. ..+ +.+.+++.++...
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 469999999999999999999999999997 4454432211 112 3355555432100
Q ss_pred --------h-------------------------------hcceeEEeecCCCCCC------------------------
Q 015591 261 --------T-------------------------------FARVSGYCEQTDIHSP------------------------ 277 (404)
Q Consensus 261 --------~-------------------------------~~~~~g~v~Q~~~~~~------------------------ 277 (404)
. ..+..|++.++..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 0122467777655544
Q ss_pred --------CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 278 --------QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 278 --------~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
.+||.|++.|... ......+.++++.++|... ..+.+ ..+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~---------~~~~~~~~~~L~~vGL~~~---~lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN---------IPSIKRTLQVLHDVGLGYV---KLGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT---------CHHHHHHHHHHHHTTGGGS---BTTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred cCCHHHHhhCCHHHHHHHHhc---------chhHHHHHHHHHHcCCchh---hccCC-ccCCCHHHHHHHHHHHHHhhCC
Confidence 3688888887431 1223456788998898642 22333 3479999999999999999876
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 350 ---SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 350 ---~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+||||||||+|||+.++..+++.|++++++|.|||+|+|+++ ....+|+++.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIiv 879 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIID 879 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEE
Confidence 799999999999999999999999999888999999999985 4466999875
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=2.2e-29 Score=254.08 Aligned_cols=194 Identities=14% Similarity=0.166 Sum_probs=134.3
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC------------------------------------Cceee
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT------------------------------------GSMEG 248 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~------------------------------------~~~~G 248 (404)
.+++++++++++| +++|+|||||||||||++|.++... ...+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4789999999999 9999999999999999999664321 01258
Q ss_pred EEEECCccCchh---hh-cceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-------------------ccCCh------
Q 015591 249 EIKIGGYPKVQE---TF-ARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-------------------PEINS------ 299 (404)
Q Consensus 249 ~I~i~G~~~~~~---~~-~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-------------------~~~~~------ 299 (404)
++++||.+.... .+ +..+++++|++.++. .+..+...|....... .....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 899999886532 22 234789999766543 2554444432111000 00000
Q ss_pred --------------------------------hhHHHHHHHHHHHcCCCCCc----------------cc---cccCC--
Q 015591 300 --------------------------------KTKAEFVNEVLETIELDGIK----------------DS---LVGIP-- 326 (404)
Q Consensus 300 --------------------------------~~~~~~~~~~l~~l~l~~~~----------------~~---~vg~~-- 326 (404)
..-.+.+.+.++.+++.+.. +. .+...
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 00112344455555554310 00 11100
Q ss_pred ----CCCC-CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcc
Q 015591 327 ----GVNG-LSTEQRKRLTIAVELVANP--SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFD 399 (404)
Q Consensus 327 ----~~~~-LSgGqrqRl~IAraL~~~p--~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd 399 (404)
.... ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|+++. +|.|||+|||++ ++.+.+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 0111 7999999999999999999 9999999999999999999999999997 699999999997 4678899
Q ss_pred cccc
Q 015591 400 EVKQ 403 (404)
Q Consensus 400 ~~l~ 403 (404)
++++
T Consensus 364 ~i~~ 367 (415)
T 4aby_A 364 HHYK 367 (415)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9875
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=1.2e-28 Score=268.81 Aligned_cols=182 Identities=26% Similarity=0.375 Sum_probs=132.5
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh-C----CC-----CCCc---eee------EEEECCccCch--h----
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA-G----RK-----TTGS---MEG------EIKIGGYPKVQ--E---- 260 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~-g----~~-----~~~~---~~G------~I~i~G~~~~~--~---- 260 (404)
+|+||||+|++|+++||+|+||||||||+++|. | .. .++. ..| .|.+++.++.. .
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 699999999999999999999999999999853 2 11 1221 113 35666655310 0
Q ss_pred -------h---------hcceeEEeecCCCC----------------------CC-------------------------
Q 015591 261 -------T---------FARVSGYCEQTDIH----------------------SP------------------------- 277 (404)
Q Consensus 261 -------~---------~~~~~g~v~Q~~~~----------------------~~------------------------- 277 (404)
. ..+..||++|...+ ++
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 0 01334666653221 11
Q ss_pred -------CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 278 -------QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 278 -------~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
.+|+.|++.|.... .+.+.+.++++.++|.. ..+... ..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~~---------~~~~~~~~~L~~lgL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEPI---------AGVHRYLRTLVDVGLGYVRLGQPA-----PTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTTC---------HHHHHHHHHHHHTTGGGSBTTCCG-----GGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhcc---------hHHHHHHHHHHHcCCCcccccCcc-----ccCCHHHHHHHHHHHHHHhCC
Confidence 25677777664211 11233567899999865 344443 479999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 350 ---SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 350 ---~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||||+|||+.++..+++.|++++++|.|||++||+++. ...+|+++.
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~--i~~aDrIiv 937 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDV--IKTSDWIID 937 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH--HHhCCEEEE
Confidence 9999999999999999999999999998889999999999863 478999875
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-31 Score=274.17 Aligned_cols=168 Identities=15% Similarity=0.100 Sum_probs=130.4
Q ss_pred eeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee-E-EEECCccCchhhhcceeEEeecCCC---CCCCCCHH
Q 015591 208 YDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG-E-IKIGGYPKVQETFARVSGYCEQTDI---HSPQITVE 282 (404)
Q Consensus 208 ~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G-~-I~i~G~~~~~~~~~~~~g~v~Q~~~---~~~~~Tv~ 282 (404)
+++|+++++|++++|+||||||||||+|+|+|+..+ .+| + |.++|. .++.++|++|+.. +...+|++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p--~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK--FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH--HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc--cCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 379999999999999999999999999999998875 469 8 999983 2567899999763 45567999
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHH--HhcCCCE----EEEeC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVE--LVANPSI----IFMDE 356 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAra--L~~~p~i----LlLDE 356 (404)
||+ |+........ ..+.+.++++.+++.+..+ . .+||||||||++|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~~-----~~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGAT-----LLHNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSCC-----SSCCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCcc-----hHHHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 7543211110 0122345666777766554 1 3699999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC--H---HHHHhccc
Q 015591 357 -PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS--I---DIFEAFDE 400 (404)
Q Consensus 357 -PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~--~---~i~~~fd~ 400 (404)
||++||+. ...+.+.+++ .|+|+|+++|+.+ . ++..++|+
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhccc
Confidence 99999999 5555555543 3789999999987 3 45577888
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=5.7e-31 Score=242.76 Aligned_cols=148 Identities=14% Similarity=0.149 Sum_probs=100.9
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
+++.+|+|| ++||+++|+||||||||||+++|+|+ +| .+|+|............++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 446789996 89999999999999999999999998 65 3587732101111123456799999964
Q ss_pred HHHH-HHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 015591 282 EESV-IFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360 (404)
Q Consensus 282 ~e~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsg 360 (404)
+||+ .+....... .......+.++++++. + | |||||++|||||+.+|++|||||||+|
T Consensus 76 ~enl~~~~~~~~~~--~~~~~~~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 76 NEKIDPYLRPLHDA--LRDMVEPEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp ----CTTTHHHHHH--HTTTSCTTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HHHHHHHHHHHHHH--HHHhccHHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 5555 332110000 0000001234455542 1 2 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
++..+++.|+++ ++|+||| +|||++
T Consensus 135 ----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 135 ----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp ----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred ----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 888999999988 6799999 999986
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.94 E-value=6.3e-28 Score=215.22 Aligned_cols=143 Identities=15% Similarity=0.197 Sum_probs=100.0
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCC-CCCCHHHHHHH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS-PQITVEESVIF 287 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~-~~~Tv~e~l~~ 287 (404)
||||++++||+++|+||||||||||++++.+ |...+++ ... .|+++|+.... ...++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--------~~~~~~~-----d~~---~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK--------PTEVISS-----DFC---RGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC--------GGGEEEH-----HHH---HHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc--------CCeEEcc-----HHH---HHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999753 1111111 111 25677753210 0111111111
Q ss_pred HhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH---
Q 015591 288 SAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR--- 364 (404)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~--- 364 (404)
......+ ..+.....+.. ...|+|||||++||||++.+|++|+|||||++||+.
T Consensus 64 ----------------~~~~~~~-~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIVSKRL-QLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHHHHHH-HTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHHHHHH-hCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1111222 23443333322 247999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 365 -------------AAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 365 -------------~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
....+++.|++++++|.|+|++||+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558889999888767999999999985
No 68
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=1.8e-25 Score=222.76 Aligned_cols=73 Identities=26% Similarity=0.394 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 329 NGLSTEQRKRLTIAVELV------ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~------~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
.+||||||||++||+||+ .+|++|||||||+|||+.++..+++.|+++.+.|+|||+|||+++ ..+.+|+++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~~ 355 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRKL 355 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCEE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEEE
Confidence 469999999999999999 799999999999999999999999999999878999999999985 477899987
Q ss_pred c
Q 015591 403 Q 403 (404)
Q Consensus 403 ~ 403 (404)
+
T Consensus 356 ~ 356 (365)
T 3qf7_A 356 R 356 (365)
T ss_dssp E
T ss_pred E
Confidence 5
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=1.5e-25 Score=219.60 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 329 NGLSTEQRKRLTIAVELV----ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~----~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
..||+|||||++||++|+ .+|++|||||||++||+..+..+.+.|+++. +|.|||++||+++ +.+.+|++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~ 291 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLL 291 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceE
Confidence 469999999999999997 6899999999999999999999999999985 5899999999964 67889975
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.92 E-value=1.7e-28 Score=247.42 Aligned_cols=171 Identities=14% Similarity=0.161 Sum_probs=136.3
Q ss_pred eeeeeeeeeeeeCCc--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhc
Q 015591 204 LRLLYDVTGSLRPGV--------------------LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFA 263 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge--------------------~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~ 263 (404)
+.+|++||+++++|+ ++||+||||||||||+|+|+|+.++. +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~--~GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE--EGAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS--TTSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc--CceEEECCeecc----e
Confidence 458999999999999 99999999999999999999998764 599999987542 1
Q ss_pred ceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH--HHHHHHH
Q 015591 264 RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE--QRKRLTI 341 (404)
Q Consensus 264 ~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG--qrqRl~I 341 (404)
.++++|.+ .++.+|+.|++.++. . ...+++.++.+++.+..... . ||+| ||||+.|
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~------~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI------I-ISATRFKKNDIDI 167 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE------E-EESSCCCHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE------E-eCCCCccHHHHHH
Confidence 27899964 567889988876542 0 12357788888876543222 2 8999 9999999
Q ss_pred HHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CeEEEEecCCCH-HHHHhcccc
Q 015591 342 AVELVA----------NPSIIFMDEPTTGLDARAAAIIMRAVKNVV-----DTG----RTIVCTIHQPSI-DIFEAFDEV 401 (404)
Q Consensus 342 AraL~~----------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-----~~g----~tii~~tH~~~~-~i~~~fd~~ 401 (404)
|++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+.+. .+-+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 333 678899998873 377777776
Q ss_pred c
Q 015591 402 K 402 (404)
Q Consensus 402 l 402 (404)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 4
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.90 E-value=5.5e-28 Score=221.80 Aligned_cols=179 Identities=11% Similarity=0.016 Sum_probs=112.4
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
...+++| .++++||+++|+||||||||||+|+|+|+.+. +.+.+.+.+.+.. ...++.++|++|+...++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~--i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN--LHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT--CEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc--eEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhc
Confidence 3568888 79999999999999999999999999998642 2333323232211 12345689999987666777777
Q ss_pred HHHHHHhhhhc---CccCChhhHHHHHHHH------HHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 015591 283 ESVIFSAWLRL---APEINSKTKAEFVNEV------LETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 353 (404)
Q Consensus 283 e~l~~~~~~~~---~~~~~~~~~~~~~~~~------l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLl 353 (404)
+++.+...... .......+..+.+++. ++.+++.+..+... ..|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHH
Confidence 76543211110 0011122222333332 22223322222221 2355 8899999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 354 MDEPTTGL----DARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 354 LDEPtsgL----D~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||+++ |+..+..+.+.++++.+ .|.|+|++||+++ ++...+|++++
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~ 200 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLV 200 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHH
Confidence 99999998 78899999999999974 5899999999997 78999999875
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.90 E-value=2.5e-25 Score=200.10 Aligned_cols=139 Identities=16% Similarity=0.140 Sum_probs=93.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP 295 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~ 295 (404)
.++|+||||||||||+++|+|+.. |.++|.+... ...++.+||++|+. ++.+++ +. ...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~--- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SKF--- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ETT---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hhc---
Confidence 689999999999999999999764 2233322111 13456789999964 222222 10 000
Q ss_pred cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHH
Q 015591 296 EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTTGLDARAAAI 368 (404)
Q Consensus 296 ~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAra-----L~~~p~iLlLDE--PtsgLD~~~~~~ 368 (404)
. .-.+..+... ..||||||||++||++ ++.+|++|+||| ||++||+..+..
T Consensus 64 -~----------------~~~~~~~~~~-----~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 64 -F----------------TSKKLVGSYG-----VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -C----------------CCSSEETTEE-----ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -C----------------Cccccccccc-----cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0 0001222322 3699999999999996 999999999999 999999999998
Q ss_pred HHHHHHHHHhCCCeEEEEecC--CCHHHHHhccc
Q 015591 369 IMRAVKNVVDTGRTIVCTIHQ--PSIDIFEAFDE 400 (404)
Q Consensus 369 i~~~l~~l~~~g~tii~~tH~--~~~~i~~~fd~ 400 (404)
+.+.+++ .+.|+|+++|+ ....+...+|+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHhc---CCCeEEEEEccCCCchHHHHHHhc
Confidence 8888864 47789999972 23345566665
No 73
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.88 E-value=2.9e-27 Score=219.21 Aligned_cols=179 Identities=10% Similarity=0.013 Sum_probs=115.4
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh----hhcceeEEeecCCCCCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE----TFARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~g~v~Q~~~~~~~~ 279 (404)
..-|+||||++++|++++|+||||||||||+++|+|+. + |+|.+ |.+.... ..++.++|++|++..++.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 34799999999999999999999999999999999976 3 78888 7653211 2345688999865443322
Q ss_pred CH-HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHH-----HHHHhcCCCEEE
Q 015591 280 TV-EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTI-----AVELVANPSIIF 353 (404)
Q Consensus 280 Tv-~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~I-----AraL~~~p~iLl 353 (404)
+. .+++.+.. ... .... ...+.++++++...+. ... ..||||||||++| +|+++.+|++++
T Consensus 84 ~~~~~~l~~~~-~~~--~~~g-~~~~~i~~~l~~~~~~-----il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 84 LKNEDFLEYDN-YAN--NFYG-TLKSEYDKAKEQNKIC-----LFE----MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HHTTCEEEEEE-ETT--EEEE-EEHHHHHHHHHTTCEE-----EEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hhccchhhhhh-ccc--ccCC-CcHHHHHHHHhCCCcE-----EEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 20 11111100 000 0000 1123456666643321 221 2599999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-------CCCeEEEEecCCCHHHHHhccccc
Q 015591 354 MDEPTTGLDARAAAIIMRAVKNVVD-------TGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 354 LDEPtsgLD~~~~~~i~~~l~~l~~-------~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
|||||+++|..++..|.+.+.++.+ .+.+.|+++|+++ +.+...|+++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 9999999999999999988877642 4578899999986 6777777665
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.88 E-value=1.8e-24 Score=210.20 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=120.1
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh-------hh--cceeEEeecCCC-CC
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE-------TF--ARVSGYCEQTDI-HS 276 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-------~~--~~~~g~v~Q~~~-~~ 276 (404)
++++|+++++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... .+ ++.++|++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 46789999999999999999999999999999987653 59999999875321 22 346899999887 78
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEE
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS--IIFM 354 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~--iLlL 354 (404)
+.+|++||+.++.... .. ..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 8899999998864211 00 134556677666666543 589 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCC
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQP 390 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tH~~ 390 (404)
| ||+|||+..+. +++. +.|.|+|++||..
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThlD 257 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKLD 257 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECCS
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCC
Confidence 9 99999998542 3444 3589999999943
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.88 E-value=2.8e-25 Score=212.63 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN 298 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~ 298 (404)
.++|+||||||||||+|+|+|+..+. +|+|.++|.+......++.++|++|++.+++.+||.||+.|+......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~--~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~---- 77 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR--KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE---- 77 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC--CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH----
Confidence 48999999999999999999987664 599999998765444567899999998888999999999887533211
Q ss_pred hhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 015591 299 SKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378 (404)
Q Consensus 299 ~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~ 378 (404)
...+.+.+.++ ....+... ..||||||||++||||++. +++||||++|||+.. .+.++++.+
T Consensus 78 --~~~~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 78 --NCWEPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp --TCSHHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred --HHHHHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11112233332 12233333 2699999999999999876 999999999999987 455566655
Q ss_pred CCCeEEEEecCCC
Q 015591 379 TGRTIVCTIHQPS 391 (404)
Q Consensus 379 ~g~tii~~tH~~~ 391 (404)
. .+||++.|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999998753
No 76
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.87 E-value=1.8e-23 Score=205.59 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=100.3
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-hhhcceeEEeecCCCCCCCCCHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
++++++|+.+++|++++|+||||||||||+++|+|++++. +|.|.++|.+... ...++.+++++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~--~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT--SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CcEEEECCeeccccccchhEEEEEe-------------
Confidence 3899999999999999999999999999999999998764 5999999864210 01122222221
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
+ |||+||++|||||..+|++|+|||||+.
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~--- 252 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS--- 252 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST---
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH---
Confidence 1 7899999999999999999999999982
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 364 RAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 364 ~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++.+.|+.+...+.|+|+|+|+++ ..+.+|+++.
T Consensus 253 ----e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~ 286 (330)
T 2pt7_A 253 ----EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLAN 286 (330)
T ss_dssp ----HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhhee
Confidence 356777777643458999999997 5677888764
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.87 E-value=1.2e-23 Score=208.63 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=120.6
Q ss_pred eeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh-------hh--cceeEEeecCCC-CCC
Q 015591 208 YDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE-------TF--ARVSGYCEQTDI-HSP 277 (404)
Q Consensus 208 ~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-------~~--~~~~g~v~Q~~~-~~~ 277 (404)
+.+|+++++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... .+ ++.++|++|++. .++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc--CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 4689999999999999999999999999999987653 59999999875321 12 346899999887 788
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEe
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS--IIFMD 355 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~--iLlLD 355 (404)
..|++||+.++.... .. ..+++.+|+.+..+.... +|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 899999998864211 00 124556677666666543 589 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecC
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQ 389 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~ 389 (404)
||+|||+.++. +++.+ .|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999998653 34443 58999999994
No 78
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=8.2e-26 Score=219.34 Aligned_cols=146 Identities=14% Similarity=0.202 Sum_probs=109.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||+|.|. .++|+++|++|++|++++|+||||||||||+++|+|++ +|+|.
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~------- 155 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL------- 155 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE-------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE-------
Confidence 67778887552 35899999999999999999999999999999999987 38873
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHH-HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEE-SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
+|++|++.++ ..|++| |+.+.. ... ..+.+.++.+ |++..| | ..|||||||
T Consensus 156 --------~~v~q~~~lf-~~ti~~~ni~~~~------~~~-----~~~~~~i~~~-L~~gld---g----~~LSgGqkQ 207 (305)
T 2v9p_A 156 --------SFANHKSHFW-LASLADTRAALVD------DAT-----HACWRYFDTY-LRNALD---G----YPVSIDRKH 207 (305)
T ss_dssp --------CGGGTTSGGG-GGGGTTCSCEEEE------EEC-----HHHHHHHHHT-TTGGGG---T----CCEECCCSS
T ss_pred --------EEecCccccc-cccHHHHhhccCc------ccc-----HHHHHHHHHH-hHccCC---c----cCcCHHHHH
Confidence 4566655443 357776 776631 111 1345556653 444444 2 369999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
| ||||+++|+||| ||+||+.++..|.. ++|+++ .+..+|++
T Consensus 208 R---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i 248 (305)
T 2v9p_A 208 K---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC 248 (305)
T ss_dssp C---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC
T ss_pred H---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE
Confidence 9 999999999999 99999999988762 188876 35678887
No 79
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.85 E-value=1.7e-23 Score=212.92 Aligned_cols=162 Identities=18% Similarity=0.126 Sum_probs=124.2
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc---cCch--------hhhcceeEEeec
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY---PKVQ--------ETFARVSGYCEQ 271 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~---~~~~--------~~~~~~~g~v~Q 271 (404)
+.++|+++ +.+.+||+++|+||||||||||+++|+|+.+++ .|.|.++|+ +... ...++.++|++|
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~--~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD--VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC--eEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 35699999 999999999999999999999999999987764 699999997 3321 235678999999
Q ss_pred C-CCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 015591 272 T-DIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS 350 (404)
Q Consensus 272 ~-~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~ 350 (404)
+ +..++.+|+.+|+.+.+...... . +++ ....|.. ..||+|| ||++|| +.+|+
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~~---~-------~~v------~~~ld~l------~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRDR---G-------QHV------LLIMDSL------TRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTT---T-------CEE------EEEEECH------HHHHHHH-HHHHHH---TTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhC---C-------CCH------HHHHHhH------HHHHHHH-HHHHHH---hCCCc
Confidence 5 45567789999998865432110 0 000 1112221 3599999 999999 88998
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----eEEEEecCCCHHHHHhccccc
Q 015591 351 IIFMDEPTTGLDARAAAIIMRAVKNVVD---T-GR-----TIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 351 iLlLDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tii~~tH~~~~~i~~~fd~~l 402 (404)
+ |+|||+..+..+.+.++++.+ + |. ||++++||++ ...+|+++
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~ 326 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSAR 326 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHH
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEE
Confidence 8 999999999999999999865 3 74 9999999997 34456544
No 80
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.85 E-value=8.3e-21 Score=187.12 Aligned_cols=73 Identities=23% Similarity=0.347 Sum_probs=66.1
Q ss_pred CCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 329 NGLSTEQRK------RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 329 ~~LSgGqrq------Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
..||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.++|.|||++||++ ++++.+|+++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~~ 324 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVI 324 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEEE
Confidence 479999999 67788888899999999999999999999999999999877789999999995 4788999987
Q ss_pred c
Q 015591 403 Q 403 (404)
Q Consensus 403 ~ 403 (404)
.
T Consensus 325 ~ 325 (339)
T 3qkt_A 325 R 325 (339)
T ss_dssp E
T ss_pred E
Confidence 4
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.85 E-value=1.8e-24 Score=211.13 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=96.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhc
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL 293 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~ 293 (404)
+++|+++||+||||||||||+++|+|+..+. .|. +.+++|+|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--DHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--TTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--CCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 8999999999999999999999999987652 131 457999998888877 99999865321 1
Q ss_pred CccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 294 APEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
........+.+.++++.++ .+..+..+. .||+||+||+++|++++.+|+|||||||++.+|+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~~-----~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACAP-----VYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEEE-----EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCcc-----cCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1122233455677888777 444444432 6999999999999999999999999999999985
No 82
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.84 E-value=3.8e-22 Score=192.46 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=114.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee-EEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG-EIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G-~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
.++|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+.......+++.+..+.+... +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 34799999999999999999999999999999999976543 36 56544333332333333333333221 1233
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC--
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ-RKRLTIAVELVANPSIIFMDEPTT-- 359 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq-rqRl~IAraL~~~p~iLlLDEPts-- 359 (404)
+++.... + ...+..+.++++++...+. +.+. ...+|.+| +||+. |+++..+|++||+||||+
T Consensus 96 ~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 4443321 1 1112223344443322221 1111 12589998 67776 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHhC-CCeEEEEecCC--CH-------------------HHHHhcccccc
Q 015591 360 -G---LDA-RAAAIIMRAVKNVVDT-GRTIVCTIHQP--SI-------------------DIFEAFDEVKQ 403 (404)
Q Consensus 360 -g---LD~-~~~~~i~~~l~~l~~~-g~tii~~tH~~--~~-------------------~i~~~fd~~l~ 403 (404)
+ +|. .....+++.|++++++ |.|||+++|+. +. .+.+.+|+++.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~ 231 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIA 231 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEE
Confidence 5 555 6678899999999764 99999999996 31 57788999875
No 83
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.82 E-value=8.3e-20 Score=198.05 Aligned_cols=92 Identities=23% Similarity=0.359 Sum_probs=79.7
Q ss_pred HHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 015591 304 EFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANP--SIIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380 (404)
Q Consensus 304 ~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p--~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g 380 (404)
++++ .++.+||... .++.+. .|||||||||.||++|+.+| ++|||||||++||+.....+.+.|++|++.|
T Consensus 358 ~rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G 431 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGG 431 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 3344 5778898765 566643 79999999999999999999 4999999999999999999999999998889
Q ss_pred CeEEEEecCCCHHHHHhcccccc
Q 015591 381 RTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 381 ~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.|||+|+|+++ +...+|+++.
T Consensus 432 ~TVIvVeHdl~--~l~~aD~ii~ 452 (842)
T 2vf7_A 432 NSLFVVEHDLD--VIRRADWLVD 452 (842)
T ss_dssp CEEEEECCCHH--HHTTCSEEEE
T ss_pred CEEEEEcCCHH--HHHhCCEEEE
Confidence 99999999985 5678999875
No 84
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.82 E-value=4.3e-22 Score=187.22 Aligned_cols=156 Identities=11% Similarity=0.025 Sum_probs=99.6
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
+++.+|+|+||++++|+++||+||||||||||+++|+|+. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567999999999999999999999999999999999853 222232 2456789999974 6678899
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
.+++.+......... ......+.+.+.++.+ .+..+..+ ..||+||+||+.+ ++++.+|+++|||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999877543211000 1111123334444432 23334443 3699999999988 5888899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 362 DARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 362 D~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
|.. +.++ .+.+|++++|+.
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSD 165 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHH
T ss_pred cHH--------HHHh--cCeEEEEECCHH
Confidence 764 2222 378999999973
No 85
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.82 E-value=1.3e-20 Score=195.76 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=66.6
Q ss_pred CCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGL-STEQRKRLTIAVELVANP--SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~L-SgGqrqRl~IAraL~~~p--~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..| |||||||++||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||+|||+++ +...+|++++
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 457 999999999999999999 99999999999999999999999999986 899999999975 5567999875
No 86
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.81 E-value=8.4e-21 Score=180.63 Aligned_cols=130 Identities=17% Similarity=0.278 Sum_probs=94.5
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
++|+++| +++|++++|+||||||||||+++|+|++++. .+|+|.++|.++. |++|....
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~---------~~~~~~~~--------- 73 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE---------YVFKHKKS--------- 73 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCC---------SCCCCSSS---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcce---------eecCCcce---------
Confidence 4899999 9999999999999999999999999987642 1599999887642 22221100
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
+ +.+. .+++.. ..+ |++||++|..+|++|++|||| |++
T Consensus 74 --~---------v~q~-----------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 74 --I---------VNQR-----------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp --E---------EEEE-----------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred --e---------eeHH-----------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 0 0000 112211 123 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 365 AAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 365 ~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+...++ +. ++.|.+|++++|+.+ ..+.+|+++.
T Consensus 112 ~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~ 144 (261)
T 2eyu_A 112 TVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVD 144 (261)
T ss_dssp HHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHH
T ss_pred HHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhh
Confidence 865443 33 346999999999987 4677887653
No 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.80 E-value=8.2e-21 Score=210.44 Aligned_cols=146 Identities=18% Similarity=0.140 Sum_probs=106.5
Q ss_pred ceeeeeeeeeeeeC-------CcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeE-EeecCCC
Q 015591 203 KLRLLYDVTGSLRP-------GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSG-YCEQTDI 274 (404)
Q Consensus 203 ~~~iL~~vs~~i~~-------Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g-~v~Q~~~ 274 (404)
+..+++|+++.+++ |++++|+||||||||||||+| |+..+ ...+| ||+|+..
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC
Confidence 35699999999987 999999999999999999999 86531 12344 8998642
Q ss_pred CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 015591 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 354 (404)
Q Consensus 275 ~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlL 354 (404)
.+|+.|++.. .+++.+.... +.+.+|+|+++ +++|++++.+|+++||
T Consensus 828 ---~l~v~d~I~~------------------------rig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLL 874 (1022)
T 2o8b_B 828 ---RLTPIDRVFT------------------------RLGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLV 874 (1022)
T ss_dssp ---EECCCSBEEE------------------------ECC--------------CHHHHHHHH-HHHHHHHCCTTCEEEE
T ss_pred ---CCCHHHHHHH------------------------HcCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEE
Confidence 3455554411 1122111111 12357777765 9999999999999999
Q ss_pred eCCCCCCCHHHH-HHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccc
Q 015591 355 DEPTTGLDARAA-AIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 355 DEPtsgLD~~~~-~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l 402 (404)
||||+|+|+... ..++..|+.++++ |.++|++||+++ .+...+|++.
T Consensus 875 DEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~ 923 (1022)
T 2o8b_B 875 DELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVA 923 (1022)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSS
T ss_pred ECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcce
Confidence 999999999884 5578889998876 999999999986 3455677654
No 88
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.80 E-value=3.7e-21 Score=179.56 Aligned_cols=167 Identities=17% Similarity=0.188 Sum_probs=102.0
Q ss_pred eeee-eeeeeCCcEEEEEcCCCCcHHHHHHHHh--CCCCCCceeeEEEECCccCchh--hhcceeEEeecCCCCCCCCCH
Q 015591 207 LYDV-TGSLRPGVLTALMGVSGAGKTTLLDVLA--GRKTTGSMEGEIKIGGYPKVQE--TFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 207 L~~v-s~~i~~Ge~~alvG~sGaGKSTLl~~L~--g~~~~~~~~G~I~i~G~~~~~~--~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
|+++ ...+++|++++|+||||||||||+++|+ |...++ .|.+.+++...... ...+.+++++|+....+.+++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAI 96 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEE
Confidence 4444 2389999999999999999999999999 652332 36677776543221 122345666553322222233
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
.++..... ... ..+ .... ....+.++..+...+..-..+|++++|||||++|
T Consensus 97 ~~~~~~~~------------~~~-~~~----------~~~~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~l 148 (251)
T 2ehv_A 97 VDGVSSVV------------GLP-SEE----------KFVL-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIA 148 (251)
T ss_dssp EC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHH
T ss_pred EEcccccc------------ccc-ccc----------ceec-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHH
Confidence 22211100 000 000 0000 0123455555555555556899999999999999
Q ss_pred C-----HHHHHHHHHHHHHHHhCCCeEEEEecCCCHH--------HHHhc-ccccc
Q 015591 362 D-----ARAAAIIMRAVKNVVDTGRTIVCTIHQPSID--------IFEAF-DEVKQ 403 (404)
Q Consensus 362 D-----~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~--------i~~~f-d~~l~ 403 (404)
| +..+..+.++++.+++.|+|||+++|+++.. +...| |+++.
T Consensus 149 d~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~ 204 (251)
T 2ehv_A 149 LRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIV 204 (251)
T ss_dssp HHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEE
Confidence 8 6777779999999887799999999998743 15778 98875
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=3.8e-21 Score=200.17 Aligned_cols=164 Identities=18% Similarity=0.114 Sum_probs=113.1
Q ss_pred ceeeeeeeee-eeeCCcEEEEEcCCCCcHHHHHHH--HhCCCCCCceeeEEEECCccCch--hhhcceeEEeecCCCCCC
Q 015591 203 KLRLLYDVTG-SLRPGVLTALMGVSGAGKTTLLDV--LAGRKTTGSMEGEIKIGGYPKVQ--ETFARVSGYCEQTDIHSP 277 (404)
Q Consensus 203 ~~~iL~~vs~-~i~~Ge~~alvG~sGaGKSTLl~~--L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~g~v~Q~~~~~~ 277 (404)
+.++|++||+ .+++|++++|+||||||||||+++ ++|+.+++ +|.|+++|.+... ...++.+||++|+.....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 4569999999 999999999999999999999999 68987654 5999999987432 123456789988532111
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeC
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV-ANPSIIFMDE 356 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~-~~p~iLlLDE 356 (404)
++.+ ... .. .. . ..... ..+.-++ +.-.+..+|. .+|++++|||
T Consensus 102 ------~l~~---~~~-~~-~~-----------------~-~~~~l-----~~~~l~~-~~~~~~~~LS~g~~~~lilDe 146 (525)
T 1tf7_A 102 ------KLFI---LDA-SP-DP-----------------E-GQEVV-----GGFDLSA-LIERINYAIQKYRARRVSIDS 146 (525)
T ss_dssp ------SEEE---EEC-CC-CS-----------------S-CCSCC-----SSHHHHH-HHHHHHHHHHHHTCSEEEEEC
T ss_pred ------cEEE---Eec-Cc-cc-----------------c-hhhhh-----cccCHHH-HHHHHHHHHHHcCCCEEEECC
Confidence 1111 000 00 00 0 00000 1122222 2334444443 5789999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH--------HHHhcccccc
Q 015591 357 PTT-----GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSID--------IFEAFDEVKQ 403 (404)
Q Consensus 357 Pts-----gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~--------i~~~fd~~l~ 403 (404)
||+ +||+..+..+.++++++++.|+|||+++|+++.. ...++|++++
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~ 206 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVI 206 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEE
Confidence 998 4699999999999999987799999999999742 3445999875
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=5.9e-20 Score=191.21 Aligned_cols=151 Identities=14% Similarity=0.104 Sum_probs=110.4
Q ss_pred eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhh
Q 015591 211 TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAW 290 (404)
Q Consensus 211 s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~ 290 (404)
++.+++|++++|+|+||||||||+++++|...+. |+ +.+.+++|+.. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN---KE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 5699999999999999999999999999965431 32 12345555321 12222221
Q ss_pred hhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----H
Q 015591 291 LRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR-----A 365 (404)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~-----~ 365 (404)
+. ... ++++. ..++....+.. +..||+||+||+.+|+++..+|++|++| ||++||.. .
T Consensus 330 -~~--g~~-------~~~~~-~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMD-------FEEME-RQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCC-------HHHHH-HTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCC-------HHHHH-hCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 111 11222 23444444433 2469999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCC---------HHHHHhcccccc
Q 015591 366 AAIIMRAVKNVVDTGRTIVCTIHQPS---------IDIFEAFDEVKQ 403 (404)
Q Consensus 366 ~~~i~~~l~~l~~~g~tii~~tH~~~---------~~i~~~fd~~l~ 403 (404)
+..+.++++.+++.|.|||+++|+.. ..+..++|+++.
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~ 439 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIIL 439 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEE
Confidence 99999999999888999999999982 356778999875
No 91
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.78 E-value=2.7e-19 Score=177.48 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccc
Q 015591 330 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~---------~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~ 400 (404)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.|+++. +|+|++||. +. .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~----~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP----GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT----TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc----cCCE
Confidence 59999999999999999 8999999999999999999999999998763 799999994 42 6777
Q ss_pred ccc
Q 015591 401 VKQ 403 (404)
Q Consensus 401 ~l~ 403 (404)
++.
T Consensus 337 i~~ 339 (359)
T 2o5v_A 337 TLR 339 (359)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 92
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.78 E-value=1.3e-19 Score=198.40 Aligned_cols=144 Identities=14% Similarity=0.117 Sum_probs=97.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
++.+++|||+++++|++++|+||||||||||||++++...... .| ...... ...++++ +..+..
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-~g------~~vpa~--~~~i~~~---d~i~~~---- 722 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-IG------SYVPAE--EATIGIV---DGIFTR---- 722 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-HT------CCBSSS--EEEEECC---SEEEEE----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-cC------ccccch--hhhhhHH---HHHHHh----
Confidence 4569999999999999999999999999999999986321100 01 000000 0111111 111111
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD 362 (404)
+++.+.... +.+.+|+||+|++.|+++ +.+|+++||||||+|||
T Consensus 723 ------------------------------ig~~d~l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 723 ------------------------------MGAADNIYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ------------------------------C---------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred ------------------------------CChHHHHHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111111111 123689999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCeEEEEecCCCHHHHHhccc
Q 015591 363 ARAAAIIM-RAVKNVVD-TGRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 363 ~~~~~~i~-~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~ 400 (404)
+.....+. ..++.+++ .|.|+|++||+++ +.+++|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 99999987 77777765 5999999999975 4445543
No 93
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.77 E-value=3.9e-19 Score=154.91 Aligned_cols=73 Identities=23% Similarity=0.322 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 329 NGLSTEQRKRLTIA------VELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 329 ~~LSgGqrqRl~IA------raL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
..||||||||++|| |+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||++ ++...+|+++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ii 133 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVI 133 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEEE
Confidence 47999999999876 899999999999999999999999999999999876799999999998 4678899887
Q ss_pred c
Q 015591 403 Q 403 (404)
Q Consensus 403 ~ 403 (404)
.
T Consensus 134 ~ 134 (148)
T 1f2t_B 134 R 134 (148)
T ss_dssp E
T ss_pred E
Confidence 5
No 94
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.77 E-value=3.2e-20 Score=171.00 Aligned_cols=148 Identities=15% Similarity=0.121 Sum_probs=91.0
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-----eeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHH
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS-----MEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVI 286 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~-----~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~ 286 (404)
.-+++|++++|+||||||||||+++|+|...+.+ ..|.+++++.+... .+.+++++|...+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999443322 12467776653210 1123334443322222 3333332
Q ss_pred HHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH-HHHHHHHHHHHhc-------CCCEEEEeCCC
Q 015591 287 FSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 358 (404)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG-qrqRl~IAraL~~-------~p~iLlLDEPt 358 (404)
+.. ..+.+ +++++..+++++. +|+++++||||
T Consensus 96 ~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VAR----------------------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EEE----------------------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EEe----------------------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 210 12222 3333455555554 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCCeEEEEecCCCH---HHHHhcccccc
Q 015591 359 TGLDAR-------A-----AAIIMRAVKNVVD-TGRTIVCTIHQPSI---DIFEAFDEVKQ 403 (404)
Q Consensus 359 sgLD~~-------~-----~~~i~~~l~~l~~-~g~tii~~tH~~~~---~i~~~fd~~l~ 403 (404)
+++|+. . ...+++.|+++++ .|.|||+++|..+. .+...+|+++.
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~ 196 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVY 196 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEE
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEE
Confidence 999984 2 2367788887765 49999999996542 36677887764
No 95
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.77 E-value=5.7e-20 Score=181.72 Aligned_cols=172 Identities=16% Similarity=0.159 Sum_probs=117.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++.+++++.|.. +..+|+++ |.+.+||+++|+||||||||||+++|+|...++ .|.|.+.|++..
T Consensus 46 i~~~~l~~~~~t------------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ 110 (347)
T 2obl_A 46 LLRQVIDQPFIL------------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGR 110 (347)
T ss_dssp TTCCCCCSEECC------------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHH
T ss_pred eeecccceecCC------------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHH
Confidence 455666665521 35699999 999999999999999999999999999987764 599999886411
Q ss_pred ----------hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC---CccccccC
Q 015591 259 ----------QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG---IKDSLVGI 325 (404)
Q Consensus 259 ----------~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~vg~ 325 (404)
...+++.+.++.|.+. +..+.+.-... .....+.....+ .+ ..|.
T Consensus 111 ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~~ld~---- 168 (347)
T 2obl_A 111 EVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLLMMDS---- 168 (347)
T ss_dssp HHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEEEEET----
T ss_pred HHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHHHHhh----
Confidence 1123456778877432 22222221100 000111111101 01 0122
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----eEEEEecCCCHHHHHhc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD--TGR-----TIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~tH~~~~~i~~~f 398 (404)
+..||+|| ||+++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||++ ...+
T Consensus 169 --~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~ 233 (347)
T 2obl_A 169 --VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIG 233 (347)
T ss_dssp --HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHH
T ss_pred --HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhh
Confidence 23699999 899999 688877 999999999999999999874 477 9999999998 3456
Q ss_pred cccc
Q 015591 399 DEVK 402 (404)
Q Consensus 399 d~~l 402 (404)
|+++
T Consensus 234 d~v~ 237 (347)
T 2obl_A 234 DEVR 237 (347)
T ss_dssp HHHH
T ss_pred hheE
Confidence 6654
No 96
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.77 E-value=2.3e-19 Score=196.81 Aligned_cols=136 Identities=17% Similarity=0.159 Sum_probs=96.6
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHH--------hCCCCCCceeeEEEECCccCchhhhcceeEEeecCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVL--------AGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDI 274 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L--------~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~ 274 (404)
.+.+++|+++.+++|++++|+||||||||||||++ .|...|. ++. .++.+.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa--~~~---------------~~~~~d---- 706 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC--ESA---------------EVSIVD---- 706 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE--EEE---------------EEECCS----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc--ccc---------------cchHHH----
Confidence 35689999999999999999999999999999999 4432221 110 011100
Q ss_pred CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHH--hcCCCEE
Q 015591 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVEL--VANPSII 352 (404)
Q Consensus 275 ~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL--~~~p~iL 352 (404)
+++..+++.+ .. ..++|++++++..+|+++ +.+|+++
T Consensus 707 ---------------------------------~i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 707 ---------------------------------CILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ---------------------------------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ---------------------------------HHHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 0011112211 11 125888888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCeEEEEecCCCHHHHHhccccc
Q 015591 353 FMDEPTTGLDARAAAII-MRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 353 lLDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
||||||+|+|+.....+ ..+++.+++ .|.|+|++||+. ++.+++|++.
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~ 795 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIP 795 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCT
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccc
Confidence 99999999999998888 667777776 499999999996 4667888764
No 97
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.76 E-value=7.9e-22 Score=180.42 Aligned_cols=146 Identities=15% Similarity=0.122 Sum_probs=111.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCC--CCCCHHHHHHHHhhh
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS--PQITVEESVIFSAWL 291 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~--~~~Tv~e~l~~~~~~ 291 (404)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|++++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNYD- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT-
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCCC-
Confidence 478999999999999999999999986531 368899977655 56789888765321
Q ss_pred hcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------
Q 015591 292 RLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ----RKRLTIAVELVANPSIIFMDEPTTG------- 360 (404)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq----rqRl~IAraL~~~p~iLlLDEPtsg------- 360 (404)
.+ .....+.+.+.++.+++.+..+.. ...+|+|| +||+++|++++.+|+++++||||++
T Consensus 61 -~~----~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 61 -HP----DAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp -SG----GGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred -Ch----hhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 11 111234456677777776554443 23689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCeEEEEecCCC
Q 015591 361 LDARAAAIIMRAVKNV-VDTGRTIVCTIHQPS 391 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l-~~~g~tii~~tH~~~ 391 (404)
||+..+..+.+.+++. .++|+|++.++|+..
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999875 456999999999853
No 98
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.76 E-value=7.2e-20 Score=177.87 Aligned_cols=147 Identities=15% Similarity=0.097 Sum_probs=103.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhh--cceeEEeecCCCCCCCCCHHHHHH
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETF--ARVSGYCEQTDIHSPQITVEESVI 286 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~--~~~~g~v~Q~~~~~~~~Tv~e~l~ 286 (404)
+|++++|+||||||||||+++|+|++.+. +|+|.++|.+... ..+ ++.++|++|+....|..|++||+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 69999999999999999999999987764 5999999987531 111 345899999888888889999998
Q ss_pred HHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHH
Q 015591 287 FSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTTGLDAR 364 (404)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~--iLlLDEPtsgLD~~ 364 (404)
++.... . . ..+++..|+.+..+. -++..++||++||||++.+|+ +|.|| |+++
T Consensus 179 ~~~~~~-~-d----------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~---- 233 (304)
T 1rj9_A 179 AMKARG-Y-D----------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWLVLD-AVTG---- 233 (304)
T ss_dssp HHHHHT-C-S----------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC----
T ss_pred HHHhCC-C-C----------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH----
Confidence 653110 0 0 012222333322222 145566999999999999999 44555 4444
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEecCCC
Q 015591 365 AAAIIMRAVKNVVDT-GRTIVCTIHQPS 391 (404)
Q Consensus 365 ~~~~i~~~l~~l~~~-g~tii~~tH~~~ 391 (404)
..+++.++++.+. |.|+|++||+..
T Consensus 234 --~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 --QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp --THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred --HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4456666666544 899999999854
No 99
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.76 E-value=1.2e-19 Score=195.80 Aligned_cols=128 Identities=20% Similarity=0.178 Sum_probs=96.4
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT-TGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~-~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
++.+++|+|++ |++++|+||||||||||||+|+|... +. .|.+. + ..+..+++++| +++.+++
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~--~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ--VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT--TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc--cCcee----e----hhccceeeHHH---hhccCCH
Confidence 45799999999 99999999999999999999999642 21 24431 1 12345677765 3333444
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC--
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVEL--VANPSIIFMDEP-- 357 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL--~~~p~iLlLDEP-- 357 (404)
.||+. .++|+|+++++.+|+++ +.+|+++|||||
T Consensus 629 ~d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 629 SDDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp ------------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred HHHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 44321 14799999999999999 999999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 358 -TTGLDARAA-AIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 358 -tsgLD~~~~-~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
|++||..+. ..+++.|++ .|.|+|++||+.+
T Consensus 667 GTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 999999875 567777765 4899999999964
No 100
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.76 E-value=2.5e-18 Score=174.58 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~----~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+.|.++|+|||++ +.++.+|+++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEE
Confidence 49999999999999999 58999999999999999999999999999865588999999995 56788998864
No 101
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=4.8e-19 Score=193.56 Aligned_cols=145 Identities=21% Similarity=0.292 Sum_probs=103.7
Q ss_pred HHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCcc-CCh----hhHHHHHHH
Q 015591 234 LDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPE-INS----KTKAEFVNE 308 (404)
Q Consensus 234 l~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~-~~~----~~~~~~~~~ 308 (404)
..|..+++.+. .++|.++|+++.. +..+|+.|++.|......... ... ....+...+
T Consensus 385 ~~C~g~rl~~~--~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (916)
T 3pih_A 385 SVCGGRRLNRE--ALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLE 446 (916)
T ss_dssp TTTCSCCBCTT--GGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHH
T ss_pred hhcccccCChH--hcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHH
Confidence 34444455543 4888888876421 233577777776433221110 000 011123456
Q ss_pred HHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q 015591 309 VLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVC 385 (404)
Q Consensus 309 ~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~--iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~ 385 (404)
.+..+||... .++.. .+|||||||||+|||||+.+|+ +|||||||+|||+.....+++.|++++++|.|||+
T Consensus 447 ~L~~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 447 FLVDVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHTTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6777888754 45554 3799999999999999999887 99999999999999999999999999878999999
Q ss_pred EecCCCHHHHHhcccccc
Q 015591 386 TIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 386 ~tH~~~~~i~~~fd~~l~ 403 (404)
|+||++ +...+|+++.
T Consensus 522 VtHd~~--~~~~aD~ii~ 537 (916)
T 3pih_A 522 VEHDEE--VIRNADHIID 537 (916)
T ss_dssp ECCCHH--HHHTCSEEEE
T ss_pred EeCCHH--HHHhCCEEEE
Confidence 999974 4456999875
No 102
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.75 E-value=3e-20 Score=180.29 Aligned_cols=158 Identities=13% Similarity=0.036 Sum_probs=85.3
Q ss_pred cCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC-CCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCC
Q 015591 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR-KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 201 ~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~-~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~ 279 (404)
++++.++++++|+| +|+|+||+|||||++.|+|. ..+ .+| +.++|.+.......+.+++++|.+.....+
T Consensus 8 ~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~--~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~l 78 (301)
T 2qnr_A 8 VHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP--ERV-ISGAAEKIERTVQIEASTVEIEERGVKLRL 78 (301)
T ss_dssp ----------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEE
T ss_pred ECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC--CCC-cccCCcccCCcceEeeEEEEecCCCcccCc
Confidence 35577999999998 99999999999999999996 444 357 888886643221234578999987777788
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
|+.|+..++......... ...++.+.+ ..+... .++|||||||+.+||+++ ++++||||+
T Consensus 79 tv~Dt~g~~~~~~~~e~~-----~~l~~~l~~------~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~ 138 (301)
T 2qnr_A 79 TVVDTPGYGDAINCRDCF-----KTIISYIDE------QFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFG 138 (301)
T ss_dssp EEEEEC-----------C-----TTHHHHHHH------HHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSS
T ss_pred chhhhhhhhhhcCcHHHH-----HHHHHHHHH------HHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCcc
Confidence 998888775432100000 011111111 122332 369999999999999885 999999998
Q ss_pred C-CCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q 015591 360 G-LDARAAAIIMRAVKNVVDT-GRTIVCTIHQPS 391 (404)
Q Consensus 360 g-LD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~ 391 (404)
+ ||+... +.++++.+. +.++|++.||+.
T Consensus 139 ~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 139 HGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred cCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 5 999873 556666543 789999999974
No 103
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.71 E-value=2.4e-17 Score=157.54 Aligned_cols=151 Identities=20% Similarity=0.187 Sum_probs=101.8
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhh
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLR 292 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~ 292 (404)
.+++|++++|+||||||||||++.+++... .|.+. .|.+.. ....+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGEL---PTGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCC---CCCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccC---CCccEEEEECCCCH---HHHHHHHH---HHH
Confidence 589999999999999999999999998443 25543 344321 12346677654421 11111111 111
Q ss_pred cCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHH---HH
Q 015591 293 LAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT--GLDARA---AA 367 (404)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts--gLD~~~---~~ 367 (404)
. ... ....+++++.+.+.+..+.. +..||+||+|++ ++++.+|+++++||||+ ++|... ..
T Consensus 92 ~--~~~----~~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLS----AEERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSC----HHHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcC----hhhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 111 12345667777777665543 346999998865 68889999999999999 999744 47
Q ss_pred HHHHHHHHHHh-CCCeEEEEecCCC
Q 015591 368 IIMRAVKNVVD-TGRTIVCTIHQPS 391 (404)
Q Consensus 368 ~i~~~l~~l~~-~g~tii~~tH~~~ 391 (404)
.+++.|+++++ .|.|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88899998864 5999999999875
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.71 E-value=7.3e-19 Score=174.00 Aligned_cols=143 Identities=17% Similarity=0.146 Sum_probs=98.4
Q ss_pred eeeee-eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcee----eE-EEECCccCchhhhcceeEEeecCCCCCCCC
Q 015591 206 LLYDV-TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME----GE-IKIGGYPKVQETFARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 206 iL~~v-s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~----G~-I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~ 279 (404)
.|+++ ++.+++|++++|+||||||||||++.|++.....+.+ |. |++++.+.. .++.+++++|...+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 46665 6899999999999999999999999999965211122 67 888886531 12345566664433222
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh-------cCCCEE
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV-------ANPSII 352 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~-------~~p~iL 352 (404)
++.||+.+.. . .-|.+|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~~-------------------------------~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVAR-------------------------------A--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEEE-------------------------------C--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEEe-------------------------------c--------CChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 3433332210 0 01456677777777777 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCeEEEEecCCC
Q 015591 353 FMDEPTTGLDARA------------AAIIMRAVKNVVD-TGRTIVCTIHQPS 391 (404)
Q Consensus 353 lLDEPtsgLD~~~------------~~~i~~~l~~l~~-~g~tii~~tH~~~ 391 (404)
|+||||+++|+.. ..++++.|+++++ .|.|||+++|..+
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 9999999999852 3566677777765 5999999999865
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.71 E-value=2.8e-19 Score=162.48 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=94.7
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT---GSMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~G~ 255 (404)
++++|++|.|. ..++++ +.+++|+.++|+|+||||||||++.|+|.... .+..|.+.+.+.
T Consensus 4 l~~~~~~~~~~--------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMS--------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEE--------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheee--------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 67788888762 246777 88999999999999999999999999997510 123365443211
Q ss_pred cCchhhhcceeEEeecCCCCC----CCCC---HHHHHHHHhhh-hc--------CccCChhhHHHHHHHHHHHcCCCCCc
Q 015591 256 PKVQETFARVSGYCEQTDIHS----PQIT---VEESVIFSAWL-RL--------APEINSKTKAEFVNEVLETIELDGIK 319 (404)
Q Consensus 256 ~~~~~~~~~~~g~v~Q~~~~~----~~~T---v~e~l~~~~~~-~~--------~~~~~~~~~~~~~~~~l~~l~l~~~~ 319 (404)
-. +....-++ +.+.+. +... .+..+...... +. ............+.++++..++....
T Consensus 68 ~~----~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (210)
T 1pui_A 68 FE----VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV 142 (210)
T ss_dssp EE----EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEE
T ss_pred EE----ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEE
Confidence 00 00000011 101110 0000 11111111100 00 00000111222344555555654321
Q ss_pred -cccccCCCCCCCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe
Q 015591 320 -DSLVGIPGVNGLSTEQRKR-LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRT 382 (404)
Q Consensus 320 -~~~vg~~~~~~LSgGqrqR-l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~t 382 (404)
.... ..+|+||||| +..+++++.+|+++++|||||++|..+..++++.|.++.++|.|
T Consensus 143 v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 143 LLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 2222 3589999999 89999999999999999999999999999999999998766654
No 106
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.71 E-value=3.7e-18 Score=185.05 Aligned_cols=144 Identities=11% Similarity=0.056 Sum_probs=96.7
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
++.+++|+++. ++|++++|+||||||||||||+|+|...... .| ..+.. .+..++++.| ++..+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-IG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-TT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-cC------cccch--hcccceeHHH---HHhhCCHH
Confidence 45699999999 9999999999999999999999998532110 12 11111 1233555544 33334444
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD 362 (404)
|++..+ .+.+|+|+++ ++.+...+.+|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCC
Confidence 433210 1236777664 445556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHh-CCCeEEEEecCCCHHHHHhcccc
Q 015591 363 ARAAAII-MRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 363 ~~~~~~i-~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
+.....+ ...++.+.+ .|.++|++||+++ +...+|++
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~ 739 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKM 739 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHS
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhh
Confidence 9877775 678888877 4999999999985 34566654
No 107
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.70 E-value=2.8e-17 Score=179.04 Aligned_cols=119 Identities=23% Similarity=0.370 Sum_probs=94.2
Q ss_pred CCCCHHHHHHHHhhhhcCcc---CCh---hhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 277 PQITVEESVIFSAWLRLAPE---INS---KTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~---~~~---~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
..+||.|++.|...+..+.. +.. ++..+++ +.++.+||... .++.++ +|||||||||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCC
Confidence 46899999999665533221 000 1223344 45788899765 566654 79999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 350 --SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 350 --~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||||+|||+.....+.+.|++|++.|.|||+|+|+++ ....+|+++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~ 577 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED--TMLAADYLID 577 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHHSCSEEEE
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEE
Confidence 899999999999999999999999999888999999999985 3567999875
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.70 E-value=1.9e-18 Score=158.84 Aligned_cols=164 Identities=15% Similarity=0.116 Sum_probs=106.1
Q ss_pred eeeeeeeee-eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcc---eeEEeecCCCCCCCC
Q 015591 204 LRLLYDVTG-SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFAR---VSGYCEQTDIHSPQI 279 (404)
Q Consensus 204 ~~iL~~vs~-~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~---~~g~v~Q~~~~~~~~ 279 (404)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.+.+.+.+.......+ ..++.+|....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh----
Confidence 457888886 8999999999999999999999999975432 2356655443322211111 11222211000
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCC
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEP 357 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~--iLlLDEP 357 (404)
+++ ...... ...++ .. .. ....|.++.++...+.+...+|+ ++++|||
T Consensus 83 ---~~~------~~~~~~------------~~~~~-~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 83 ---KKL------IIIDAL------------MKEKE-DQ---WS-----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp ---TTE------EEEECC------------C-----CT---TB-----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred ---CCE------EEEecc------------ccccC-ce---ee-----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 000 000000 00001 00 01 12359999998888888888999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHh-CCCeEEEEecCCC-------HHHHHhcccccc
Q 015591 358 TTGL--DARAAAIIMRAVKNVVD-TGRTIVCTIHQPS-------IDIFEAFDEVKQ 403 (404)
Q Consensus 358 tsgL--D~~~~~~i~~~l~~l~~-~g~tii~~tH~~~-------~~i~~~fd~~l~ 403 (404)
|+++ |+.....+++.|+++++ .|.|||+++|+.. ..+.+.+|+++.
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~ 188 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIR 188 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEE
Confidence 9888 99999999999999864 5999999999983 247888998875
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.70 E-value=5.1e-18 Score=168.24 Aligned_cols=124 Identities=22% Similarity=0.257 Sum_probs=83.8
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhh
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLR 292 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~ 292 (404)
...+|++++|+||||||||||+++|+|+..+. ..|.|...+.+.. ...+...+++.|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIE-FVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCC-SCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHH-hhhhccccceeeeeeccc---------------
Confidence 67889999999999999999999999976542 1366654333321 111122233333211100
Q ss_pred cCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 015591 293 LAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372 (404)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~ 372 (404)
.++..+ +||++|..+|++|++|||| |.++.. .
T Consensus 182 -------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~----~ 213 (356)
T 3jvv_A 182 -------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETIR----L 213 (356)
T ss_dssp -------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH----H
T ss_pred -------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH----H
Confidence 122222 8999999999999999999 665543 3
Q ss_pred HHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 373 VKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 373 l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+.++++.|+|||+|+|+.+. + +.+|+++.
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~ 242 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA-A-KTIDRVVD 242 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH-H-HHHHHHHH
T ss_pred HHHHHhcCCEEEEEEccChH-H-HHHHHHhh
Confidence 34445679999999999984 3 78888764
No 110
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.69 E-value=3.1e-19 Score=188.75 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=100.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeee----------eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcee
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDV----------TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME 247 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~ 247 (404)
.+.++||++.|.... +++|+.+ ++.++. +||+|||||||||||++|+|+..|. .+
T Consensus 10 ~i~~~~l~~~~~~~~-----------r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~-~s 74 (608)
T 3szr_A 10 SVAENNLCSQYEEKV-----------RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR-GS 74 (608)
T ss_dssp ----------CHHHH-----------HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC------
T ss_pred hhhhhhhhHHHHHHH-----------HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC-CC
Confidence 467888888774321 1222222 355554 9999999999999999999987652 36
Q ss_pred eEEEECCccCc------hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccc
Q 015591 248 GEIKIGGYPKV------QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321 (404)
Q Consensus 248 G~I~i~G~~~~------~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 321 (404)
|.|.++|.++. ...+++.++|++|+..+++.+||+||+.+......... .++. +
T Consensus 75 G~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~s---~- 134 (608)
T 3szr_A 75 GIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGIS---H- 134 (608)
T ss_dssp --CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCCC---S-
T ss_pred CeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cccc---h-
Confidence 99999998731 13467789999999888899999999987542211100 0111 1
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCCeEEEEecCCC
Q 015591 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP------TTGLDARAAAIIMRAVKNVVD--TGRTIVCTIHQPS 391 (404)
Q Consensus 322 ~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEP------tsgLD~~~~~~i~~~l~~l~~--~g~tii~~tH~~~ 391 (404)
+++.++++...+|+++|+||| |+|||+..+..+.+.++++.+ .+.++++++|+.+
T Consensus 135 ---------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 135 ---------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp ---------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred ---------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch
Confidence 111222233458999999999 999999999999999999653 3678899999976
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.68 E-value=5.1e-17 Score=177.54 Aligned_cols=121 Identities=19% Similarity=0.304 Sum_probs=93.5
Q ss_pred CCCCCCHHHHHHHHhhhhcCccCC------hhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhc
Q 015591 275 HSPQITVEESVIFSAWLRLAPEIN------SKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVA 347 (404)
Q Consensus 275 ~~~~~Tv~e~l~~~~~~~~~~~~~------~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~ 347 (404)
.+..+||.|++.|...+..+.... .++..+++ +.++.+||... .++.++ +|||||||||.||++|..
T Consensus 465 q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~-----tLSGGEkQRV~LA~aL~~ 538 (993)
T 2ygr_A 465 EVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAA-----TLSGGEAQRIRLATQIGS 538 (993)
T ss_dssp CSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGG-----GCCHHHHHHHHHHHHHTT
T ss_pred HHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcc-----cCCHHHHHHHHHHHHHhh
Confidence 356689999999954443221000 01222334 34777888754 566543 799999999999999999
Q ss_pred C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 348 N--PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 348 ~--p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+ |++|||||||+|||+.....+.+.|++|++.|.|||+|+|+++ ....+|+++.
T Consensus 539 ~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~ 594 (993)
T 2ygr_A 539 GLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED--TIEHADWIVD 594 (993)
T ss_dssp CCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHHTCSEEEE
T ss_pred CCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH--HHHhCCEEEE
Confidence 9 5899999999999999999999999999888999999999985 3568999875
No 112
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.68 E-value=2e-19 Score=163.02 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=90.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP 295 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~ 295 (404)
|++++|+||||||||||+++|+|+.+ . +| |.++|.+... ..+++.+||++|+.. . + ++++ +.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g--~-~~~l---~~~~--- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--G--T-RGPL---SRVG--- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEETT--S--C-EEEE---EECC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEecc--c--c-eehh---hccc---
Confidence 78999999999999999999999765 3 48 8888865422 235678899999541 1 1 1111 0000
Q ss_pred cCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHH
Q 015591 296 EINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTTGLDARAAAI 368 (404)
Q Consensus 296 ~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqRl-~IAr---aL~~~p~iLlLDE--PtsgLD~~~~~~ 368 (404)
++..+ ..+..++..+ ..+|+|||+++ ++++ |++.+|++||||| |+..+|......
T Consensus 66 -----------------~~~~~~~~~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 66 -----------------LEPPPGKRECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp -----------------CCCCSSSCCEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred -----------------ccCCccccccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 00110 0122444433 25999999988 4455 6899999999999 898999875554
Q ss_pred HHHHHHHHHhCCCeEEE--E--ecCCC
Q 015591 369 IMRAVKNVVDTGRTIVC--T--IHQPS 391 (404)
Q Consensus 369 i~~~l~~l~~~g~tii~--~--tH~~~ 391 (404)
+.+.+ +...++|+ + +|+.+
T Consensus 128 l~~~l----~~~~~~ilgti~vsh~~~ 150 (189)
T 2i3b_A 128 VRQTL----STPGTIILGTIPVPKGKP 150 (189)
T ss_dssp HHHHH----HCSSCCEEEECCCCCSSC
T ss_pred HHHHH----hCCCcEEEEEeecCCCCc
Confidence 44444 44555554 2 38864
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=2.6e-18 Score=173.65 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=95.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+.++||++.| +++.+++++||+| +|+|+||||||||+++|+|...+.+..|.+.+++.+
T Consensus 11 ~l~~~~l~~~y-------------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQV-------------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCT-------------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeE-------------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 37778887754 3456999999998 999999999999999999976532212222222211
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
....+.+++++|.+...+.+|+.||+.++..... ......+.+.++ . .++.+++|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~------~~~~~~i~~~i~---------~--------~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN------SNCWQPVIDYID---------S--------KFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC-----------------CHHHHHHHH---------H--------HHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhccc------hhhHHHHHHHHH---------H--------HHHHHHHH
Confidence 1123457899998777778899999887643210 000011111121 1 25667788
Q ss_pred HHHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 338 RLTIAVELVANPS---IIFMDEPT-TGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 338 Rl~IAraL~~~p~---iLlLDEPt-sgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
|++|||+++.+|+ +|++|||| .+||+... +.++++. .+.+||+++|..+
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 9999999999999 99999999 69998863 4445554 4788888887654
No 114
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=2.4e-17 Score=166.22 Aligned_cols=176 Identities=18% Similarity=0.143 Sum_probs=111.6
Q ss_pred CceeeeeeeeeeeeCCcE--EEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCC
Q 015591 202 KKLRLLYDVTGSLRPGVL--TALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~--~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~ 279 (404)
++.+ |+++|+++++|++ ++|+||||||||||+|+|+|.... |.-. ... .....++.++|++|++.+++.+
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~----g~~~-~~~--~~~~~~~~i~~v~Q~~~l~~~l 97 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE----GEPA-THT--QPGVQLQSNTYDLQESNVRLKL 97 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEE
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc----CCcC-CCC--CccceEeeEEEEeecCcccccc
Confidence 3455 9999999999999 999999999999999999997421 2211 110 1112345789999988877889
Q ss_pred CHHHHHHHHhhhhcCccCChh---hHHHHHHHHHHHc-CCC----CCcccc----cc--CCCCCCCCHHHHHHHHHHHHH
Q 015591 280 TVEESVIFSAWLRLAPEINSK---TKAEFVNEVLETI-ELD----GIKDSL----VG--IPGVNGLSTEQRKRLTIAVEL 345 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~---~~~~~~~~~l~~l-~l~----~~~~~~----vg--~~~~~~LSgGqrqRl~IAraL 345 (404)
||.||+.|+..... ...... ......++.++.. ++. ...|.. +. .+..++|+-.+ +.|+++|
T Consensus 98 tv~D~~~~g~~~~~-~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 98 TIVSTVGFGDQINK-EDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp EEEEEECCCC-CCH-HHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred chhhhhhhhhcccc-chhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 99999877542110 000000 1123344455543 332 122322 11 11123577666 7899999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCeEEEEecC
Q 015591 346 VANPSIIFMDEPTTGLDARAAAIIMRAVKN-VVDTGRTIVCTIHQ 389 (404)
Q Consensus 346 ~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~-l~~~g~tii~~tH~ 389 (404)
..+++++++|||+..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999998986 76679999988864
No 115
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.62 E-value=1.3e-17 Score=154.61 Aligned_cols=129 Identities=17% Similarity=0.142 Sum_probs=85.0
Q ss_pred eeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH----HHHH
Q 015591 210 VTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV----EESV 285 (404)
Q Consensus 210 vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv----~e~l 285 (404)
-.-..++|++++|+||||||||||+++|+|+.++....|.|.+.+.+... ..++.++|++|++..++.+++ .|++
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 34467999999999999999999999999987643367999998876432 234567899985433222222 1111
Q ss_pred HHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 015591 286 IFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 365 (404)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~ 365 (404)
.+. .... +.| +++ +..++..++++||| ||+.+
T Consensus 88 ~~~-------------------------------~~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 88 EVF-------------------------------GNYY------GTS---REA---IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EET-------------------------------TEEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHH-------------------------------hccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHH
Confidence 110 0000 111 221 34556668999999 99999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 366 AAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 366 ~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
+.++.+.+. ++.||++++|+++
T Consensus 120 ~~~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 120 AQQIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHHHcc----CCEEEEEECCCHH
Confidence 999998775 5899999999975
No 116
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.61 E-value=9.5e-16 Score=136.86 Aligned_cols=72 Identities=11% Similarity=0.167 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGLSTEQRKRLTIAVELVA----NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~----~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++||++|+. +|+++||||||+|||+.++..+.+.|+++.+ +.++|++||+. .+++.+|+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 4699999999999999974 4699999999999999999999999999864 57899999996 46789999863
No 117
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.61 E-value=5.6e-16 Score=141.55 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=95.5
Q ss_pred eeeeeeee-eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 205 RLLYDVTG-SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 205 ~iL~~vs~-~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
+.|+++.. .+++|++++|+||||||||||++.|++ ..+ .+.++++... .. +...+.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~--~~v~~i~~~~-----------------~~-~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG--KKVAYVDTEG-----------------GF-SPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC--SEEEEEESSC-----------------CC-CHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC--CcEEEEECCC-----------------CC-CHHHHHH
Confidence 46777764 899999999999999999999999998 221 1333333221 10 0001111
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH--HHHHHHHHHHHhcC-CCEEEEeCCCCC
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTTG 360 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG--qrqRl~IAraL~~~-p~iLlLDEPtsg 360 (404)
... ...... +++++.+. +. .++++ ++|++..+++++.+ |+++++||||+.
T Consensus 65 ~~~-------~~~~~~-------~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 65 MAE-------TRGLNP-------EEALSRFI--------LF-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHH-------TTTCCH-------HHHHHHEE--------EE-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHH-------hcCCCh-------HHHhhcEE--------EE-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 000 000100 12222211 11 23344 46789999999986 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHhC-CCeEEEEecCCC------------HHHHHhcccccc
Q 015591 361 LDARA--------AAIIMRAVKNVVDT-GRTIVCTIHQPS------------IDIFEAFDEVKQ 403 (404)
Q Consensus 361 LD~~~--------~~~i~~~l~~l~~~-g~tii~~tH~~~------------~~i~~~fd~~l~ 403 (404)
+|+.. ...+++.|++++++ |.|||+++|... ..+...+|.++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~ 181 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILR 181 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEE
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEE
Confidence 99732 34566668887654 899999999865 246778998875
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.59 E-value=6.6e-18 Score=151.55 Aligned_cols=152 Identities=13% Similarity=0.045 Sum_probs=93.8
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh-hhcceeEEeecCCCCCCCCCHHHHHHHHhhh
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE-TFARVSGYCEQTDIHSPQITVEESVIFSAWL 291 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~ 291 (404)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.+.... ..++.++|++|... +..++.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~--~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG--VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS--SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC--CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 3679999999999999999999999997 22 48999998764211 11233567766432 356888988775432
Q ss_pred hcCccCChhhHHHHHHHHHHHcCCCCCc--cccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q 015591 292 RLAPEINSKTKAEFVNEVLETIELDGIK--DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369 (404)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~--~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i 369 (404)
........ .++.++...++.... +.. ...+|+|++||+.++|++.++|+++ +|+.....+
T Consensus 79 ~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~ 140 (191)
T 1zp6_A 79 YAKEGYFV-----ILDGVVRPDWLPAFTALARP-----LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL 140 (191)
T ss_dssp HHHTSCEE-----EECSCCCTTTTHHHHTTCSC-----EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred HhccCCeE-----EEeccCcHHHHHHHHhcCCC-----eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence 11000000 000000000110000 111 1259999999999999999999876 688888778
Q ss_pred HHHHHHHHhCCCeEEEEec
Q 015591 370 MRAVKNVVDTGRTIVCTIH 388 (404)
Q Consensus 370 ~~~l~~l~~~g~tii~~tH 388 (404)
.+.++.+.+.+..+|.++|
T Consensus 141 ~~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 141 HSQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHHTTCCGGGGGGEEECTT
T ss_pred HHHHhccCcccccEEECCC
Confidence 7777666433334444443
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.59 E-value=5.6e-16 Score=154.52 Aligned_cols=129 Identities=18% Similarity=0.278 Sum_probs=94.2
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
.+|++++ +++|++++|+||||||||||+++|+|++++. .+|+|.+.|.+.. ..++..+++++|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 3677766 8999999999999999999999999987642 1599977766543 23445567777730
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
+++. . ..+ +.+|+++|..+|++|++|||+ |++
T Consensus 191 ----------------------------~g~~----~-------~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED----T-------KSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT----B-------SCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC----H-------HHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1211 0 124 468999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 365 AAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 365 ~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+.. .+++. +..|.+++.++|+.+ +.+.+|+++
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~ 254 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIV 254 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHH
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHH
Confidence 543 34443 346999999999976 567777764
No 120
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.57 E-value=6.4e-19 Score=172.19 Aligned_cols=163 Identities=13% Similarity=0.096 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCC------CceeeEEEECCccCch------------------hhhcceeEEe---e
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKTT------GSMEGEIKIGGYPKVQ------------------ETFARVSGYC---E 270 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~~------~~~~G~I~i~G~~~~~------------------~~~~~~~g~v---~ 270 (404)
++++|+|+||||||||+|.|.|.... .+..|+|.+||.++.. ..+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999997511 1245999999876421 1233445666 5
Q ss_pred cCCCCCCCCCHHHHHHHHhhhhcCccC---ChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc
Q 015591 271 QTDIHSPQITVEESVIFSAWLRLAPEI---NSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA 347 (404)
Q Consensus 271 Q~~~~~~~~Tv~e~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~ 347 (404)
|....++..++.||..++......... ........++.++..+++.+..+... ++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 655555677777776553110000000 00000011122233344444444432 489999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFD 399 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd 399 (404)
+|+++ ||| ..+.+.|+++. .+.||++++|++. +.-..||
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 99987 998 67888888875 5899999999864 3333443
No 121
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.57 E-value=3.1e-18 Score=170.26 Aligned_cols=149 Identities=12% Similarity=0.091 Sum_probs=90.6
Q ss_pred eeeeeeeeeeC--CcEEEEEcCCCCcHHHHHHHHhCCCCCCcee----eEEEEC----CccC--chhhhcceeEEeecCC
Q 015591 206 LLYDVTGSLRP--GVLTALMGVSGAGKTTLLDVLAGRKTTGSME----GEIKIG----GYPK--VQETFARVSGYCEQTD 273 (404)
Q Consensus 206 iL~~vs~~i~~--Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~----G~I~i~----G~~~--~~~~~~~~~g~v~Q~~ 273 (404)
+.+.|++.|++ |+.++|+||||||||||+++|+|++.+ .+ |++.++ |.+. ....+ +.+++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 45689999999 999999999999999999999998775 35 555442 2111 00111 1122332211
Q ss_pred CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh-cCCCEE
Q 015591 274 IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV-ANPSII 352 (404)
Q Consensus 274 ~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~-~~p~iL 352 (404)
. .+..|+.||+.+. + .+..++.. ..+|+|++||..+++++. .+|+++
T Consensus 234 ~-~~~~t~~~nl~~~-------------------------~-~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 I-DYAVRHSHKIAFI-------------------------D-TDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp H-HHHHHHCSSEEEE-------------------------S-SCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred H-HHHHhccCCEEEE-------------------------e-CCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 0 0111111111110 0 00111111 135667778888888774 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCeEEEEecC
Q 015591 353 FMDE---PT------TGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQ 389 (404)
Q Consensus 353 lLDE---Pt------sgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~ 389 (404)
+||| |+ .++|+..+..+.+.|+++.+ .|.+||+++|.
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 9999 65 58999999999999988754 48999999975
No 122
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.55 E-value=2.5e-15 Score=149.19 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=94.8
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC-chhhhcceeEEee-cCCCCCCCCCHHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK-VQETFARVSGYCE-QTDIHSPQITVEE 283 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~-~~~~~~~~~g~v~-Q~~~~~~~~Tv~e 283 (404)
+++++|+.+++|++++|+||||||||||+++|+|++++. +|.|.++|... .....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~--~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD--QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT--SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC--ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 449999999999999999999999999999999998764 59999998532 1122456678887 43220
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
+++++..+|-.|+.++..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222366677778888899999999986
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 364 RAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 364 ~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
.++.+.|+.+.....|++.++|..+ ....+||+.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~ 297 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLA 297 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHH
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHH
Confidence 2455667766543457899999976 456667654
No 123
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.54 E-value=6.2e-18 Score=158.67 Aligned_cols=145 Identities=13% Similarity=0.159 Sum_probs=94.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---CCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhh-
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLA---GRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWL- 291 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~---g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~- 291 (404)
++++++|+||||||||||+++|+ |+..+ ..|+|.++|.+.. ....+.+.+++|+....+..++.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~--~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL--SSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE--EHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 98665 4588877765421 12233345566766777888999999764321
Q ss_pred hc----CccCChhhHHHHHHHHHHHcCC--------------CCCccccccCCCCCCCCHHHHHHHHHHHHH-hcCCCEE
Q 015591 292 RL----APEINSKTKAEFVNEVLETIEL--------------DGIKDSLVGIPGVNGLSTEQRKRLTIAVEL-VANPSII 352 (404)
Q Consensus 292 ~~----~~~~~~~~~~~~~~~~l~~l~l--------------~~~~~~~vg~~~~~~LSgGqrqRl~IAraL-~~~p~iL 352 (404)
.. ........ ..++.+.+.... ....++. +..||| |+ +++ +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccc
Confidence 00 00111111 122222211111 1111222 235888 55 777 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHH
Q 015591 353 FMD----EPTTGLDARAAAIIMRAVKNVV 377 (404)
Q Consensus 353 lLD----EPtsgLD~~~~~~i~~~l~~l~ 377 (404)
+|| |||++||..++..+.+.++++.
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHH
Confidence 999 9999999999998888887764
No 124
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.53 E-value=2.2e-16 Score=138.97 Aligned_cols=81 Identities=22% Similarity=0.096 Sum_probs=65.9
Q ss_pred cCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCC
Q 015591 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 201 ~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~T 280 (404)
++++.+++++||++++|++++|+||||||||||+|+|+|.. + .+|+|.++|.++......+ .+++|+..++ .+|
T Consensus 17 ~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~lt 90 (158)
T 1htw_A 17 FGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLA 90 (158)
T ss_dssp HHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCS
T ss_pred HHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCC
Confidence 34567899999999999999999999999999999999987 5 3599999998764211111 2788877666 899
Q ss_pred HHHHHHH
Q 015591 281 VEESVIF 287 (404)
Q Consensus 281 v~e~l~~ 287 (404)
+.||+.+
T Consensus 91 v~e~l~~ 97 (158)
T 1htw_A 91 DPEELEF 97 (158)
T ss_dssp CTTHHHH
T ss_pred cHHHHHH
Confidence 9999965
No 125
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.52 E-value=5.1e-17 Score=144.88 Aligned_cols=138 Identities=16% Similarity=0.226 Sum_probs=87.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCccCc------hhhhc-ceeE----EeecCCCCCCCCCHHHHH
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYPKV------QETFA-RVSG----YCEQTDIHSPQITVEESV 285 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~------~~~~~-~~~g----~v~Q~~~~~~~~Tv~e~l 285 (404)
++++|+|+||||||||+++|+|++.+. ...|.|.++|.++. ...++ +.+| ++.|+..++ +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i---- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----I---- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----E----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----E----
Confidence 589999999999999999999987653 12599999998632 22444 3566 777754433 0
Q ss_pred HHHhhhhcCccCChhhHHHHHHHHHHH-cCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE-------EEeCC
Q 015591 286 IFSAWLRLAPEINSKTKAEFVNEVLET-IELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII-------FMDEP 357 (404)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iL-------lLDEP 357 (404)
+.. ..+....++++++. +. ..|+.+++ +||||||||++||||++.+|++. .=|.|
T Consensus 75 ------~~~----~~~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 75 ------RRV----SEEEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ------EEC----CHHHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ------ecC----ChhhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 000 01112245666665 43 46888875 59999999999999999999873 22444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 015591 358 TTG---LDARAAAIIMRAVKNVVDTG 380 (404)
Q Consensus 358 tsg---LD~~~~~~i~~~l~~l~~~g 380 (404)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 33444567777776655554
No 126
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.52 E-value=1.8e-15 Score=154.77 Aligned_cols=153 Identities=15% Similarity=0.130 Sum_probs=103.0
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hh--hcceeEEeecCCCCCC
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ET--FARVSGYCEQTDIHSP 277 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~--~~~~~g~v~Q~~~~~~ 277 (404)
-+++||++++|++++|+|+||||||||+++|+|++.+. +|+|.++|.+... .. .++.++|++|....++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc--CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 36899999999999999999999999999999987653 5999998765421 11 2556899999887778
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh-cCCC-EEEEe
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV-ANPS-IIFMD 355 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~-~~p~-iLlLD 355 (404)
..|+++|+.++..... .+ -+++..|+.+... .+-...+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~~~~--Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNI--DV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTTC--SE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcCC--CE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8899999988642110 00 0111122211111 12234467888888764 4464 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEec
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIH 388 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH 388 (404)
.||+|.|.. +.++.+.+ .|.|.+++||
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 589887654 23344433 4899999999
No 127
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.50 E-value=5.1e-17 Score=145.92 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=99.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCcc
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPE 296 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~ 296 (404)
|++++|+||||||||||+++|++. .+|.+.++|.+... ....++++|.....+..++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999972 24889998864321 1234666665433345578888776543211000
Q ss_pred CChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC--CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHH
Q 015591 297 INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL--STEQRKRLTIAV------ELVANPSIIFMDEPTTGLDARAAAI 368 (404)
Q Consensus 297 ~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L--SgGqrqRl~IAr------aL~~~p~iLlLDEPtsgLD~~~~~~ 368 (404)
. ..+++.+......+. + ..+ |+|++|++.++. +++.+|+...+|+ +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~~-~-----~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAEA-L-----AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHHH-H-----HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHHH-H-----HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 000000000000000 0 124 778888887887 8999999888884 899988888
Q ss_pred HHHHHHHHHhCCCeEEEEecC-CCHHHHHhccccc
Q 015591 369 IMRAVKNVVDTGRTIVCTIHQ-PSIDIFEAFDEVK 402 (404)
Q Consensus 369 i~~~l~~l~~~g~tii~~tH~-~~~~i~~~fd~~l 402 (404)
.+.++.+.+.+.++|.++|+ ++ ++.+.+|+++
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~ 168 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK 168 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh
Confidence 88888876568899999998 75 6777888764
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.49 E-value=5.2e-17 Score=159.93 Aligned_cols=165 Identities=12% Similarity=0.117 Sum_probs=105.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh-------hhcceeEEeecCCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE-------TFARVSGYCEQTDIH 275 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-------~~~~~~g~v~Q~~~~ 275 (404)
.+.+|+++|+++++|++++|+|+||||||||+++|+|+..+. +|+|.+.|.+.... ..++.+++++|++..
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~--~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA--GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC--CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 356899999999999999999999999999999999976653 49999988764321 234568899997766
Q ss_pred CCCC------------CHHHHHHHHhh-------------------hhcCc-------cCChhhHHH----HHHHHHHHc
Q 015591 276 SPQI------------TVEESVIFSAW-------------------LRLAP-------EINSKTKAE----FVNEVLETI 313 (404)
Q Consensus 276 ~~~~------------Tv~e~l~~~~~-------------------~~~~~-------~~~~~~~~~----~~~~~l~~l 313 (404)
++.. +++|.+..... ..... ........+ .+.+....+
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMI 198 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEE
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEE
Confidence 5431 23333311000 00000 000000000 011111111
Q ss_pred CCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 015591 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA------NPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378 (404)
Q Consensus 314 ~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~ 378 (404)
.+ +..|.. ....+|+|++|++..|++++. +|++++ ||++|......+.+.|.++.+
T Consensus 199 vl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 199 AV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 11 112211 012479999999999999987 688875 999999999999999988653
No 129
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.49 E-value=2.6e-15 Score=147.19 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=97.4
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhhcc--eeEEeecCCCCCCCCCHHH
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETFAR--VSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~--~~g~v~Q~~~~~~~~Tv~e 283 (404)
..++|++++|+||||||||||++.|+|++.+. .|+|.+.|.+... ..+++ .+.+++|.....|.++++|
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 34789999999999999999999999987653 5999999987531 11223 3458999888888899999
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
|+.++...... . -+++..|+.+..+.. .++.-.|+|++..++++++||.+| +.
T Consensus 203 ~l~~~~~~~~d--~----------vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t-~~-- 255 (328)
T 3e70_C 203 AIQHAKARGID--V----------VLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALA-GN-- 255 (328)
T ss_dssp HHHHHHHHTCS--E----------EEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGG-TT--
T ss_pred HHHHHHhccch--h----------hHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHH-HH--
Confidence 99875321100 0 012222332221111 223334899999888888999555 43
Q ss_pred HHHHHHHHHHHHHHh-CCCeEEEEecCC
Q 015591 364 RAAAIIMRAVKNVVD-TGRTIVCTIHQP 390 (404)
Q Consensus 364 ~~~~~i~~~l~~l~~-~g~tii~~tH~~ 390 (404)
.+++.++.+.+ .+.|+|++||..
T Consensus 256 ----~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 256 ----AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp ----HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred ----HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 44555566553 589999999954
No 130
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.48 E-value=1.6e-14 Score=142.71 Aligned_cols=122 Identities=16% Similarity=0.068 Sum_probs=85.3
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCceeeEEEEC-CccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT-TGSMEGEIKIG-GYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~-~~~~~G~I~i~-G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
-++++++. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.... ...++.+++++|...+++..+++|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~--~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL--TNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC--CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc--cCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHH
Confidence 46677765 4799999999999999999999999876 53 5999887 65432 234567899999887788888988
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVEL 345 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL 345 (404)
+ .. ......+..+.+.++++.+++.+..+... .+|| ||+||++||+++
T Consensus 281 ~---~l-----~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 F---GL-----WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp C---CC-----CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred h---hh-----cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 4 11 12333444566778888889887777764 3699 999999999864
No 131
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.48 E-value=1.7e-14 Score=133.60 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=77.5
Q ss_pred eeeee-eeeeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCC---ceeeEEEECCccC-chhh---hcceeEEeecCCCCC
Q 015591 207 LYDVT-GSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTG---SMEGEIKIGGYPK-VQET---FARVSGYCEQTDIHS 276 (404)
Q Consensus 207 L~~vs-~~i~~Ge~~alvG~sGaGKSTLl~~L~g--~~~~~---~~~G~I~i~G~~~-~~~~---~~~~~g~v~Q~~~~~ 276 (404)
|+.+- .-+++|++++|+||||||||||++.|++ ...+. ...|.+++++.+. .... ..+.+++.+|
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~----- 87 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS----- 87 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-----
Confidence 44433 5789999999999999999999999998 33320 1246777766542 1110 1111111111
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH-HHHHHHHHh--cCCCEEE
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK-RLTIAVELV--ANPSIIF 353 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq-Rl~IAraL~--~~p~iLl 353 (404)
++++.+. +. ...+..+.. .+.-+.+++ .+|++++
T Consensus 88 -------------------------------~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~lli 124 (243)
T 1n0w_A 88 -------------------------------DVLDNVA--------YA----RAFNTDHQTQLLYQASAMMVESRYALLI 124 (243)
T ss_dssp -------------------------------HHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEE
T ss_pred -------------------------------HHhhCeE--------EE----ecCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 1111110 00 123444432 223233333 5899999
Q ss_pred EeCCCCCCCHH-------H-----HHHHHHHHHHHHhC-CCeEEEEecCCC
Q 015591 354 MDEPTTGLDAR-------A-----AAIIMRAVKNVVDT-GRTIVCTIHQPS 391 (404)
Q Consensus 354 LDEPtsgLD~~-------~-----~~~i~~~l~~l~~~-g~tii~~tH~~~ 391 (404)
+|||++.+|+. . ...+++.|++++++ |.|||+++|...
T Consensus 125 iD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 125 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp EETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred EeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 99999999985 3 34566666666654 999999999654
No 132
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.47 E-value=3.1e-14 Score=126.75 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=42.7
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH
Q 015591 346 VANPSIIFMDEPTT-GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSID 393 (404)
Q Consensus 346 ~~~p~iLlLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~ 393 (404)
+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|++||.+..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 45999999999985 9999999999999998877899999999988644
No 133
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.46 E-value=1.5e-14 Score=125.85 Aligned_cols=45 Identities=9% Similarity=0.212 Sum_probs=37.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe-EEEEecCCC
Q 015591 346 VANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRT-IVCTIHQPS 391 (404)
Q Consensus 346 ~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~t-ii~~tH~~~ 391 (404)
+.+|++|++|||++ +|...+..+.+.+.++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 45799999999998 6655588899999998877888 899999654
No 134
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.46 E-value=3.4e-15 Score=150.69 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=96.7
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHH
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVI 286 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~ 286 (404)
-++++++++.|+.++|+|+||||||||+++|+|..+ .+.+.+.. .....++++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999632 12232211 11223444444320 0011111100
Q ss_pred HHhhhhcCccCChhh--HHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 287 FSAWLRLAPEINSKT--KAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 287 ~~~~~~~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
+.............. ..++++.++..+++. +.. ...||+|++||+.+|++|+.+|.+|++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 000000000010000 001112223333332 222 236999999999999999999999999 999998
Q ss_pred HHHHHHHHHHH-HHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 365 AAAIIMRAVKN-VVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 365 ~~~~i~~~l~~-l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
.+ ..++.+++ +.+.|.+++.+|..-...+-++++.+
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 76 44444444 44457777766654444566666654
No 135
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.45 E-value=1.3e-13 Score=137.33 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=63.5
Q ss_pred CCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 329 NGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 329 ~~LSgGqrqRl------~IAraL~~~-p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 46999999988 567899999 99999999999999999999999999874 4578999999975 57889987
Q ss_pred cc
Q 015591 402 KQ 403 (404)
Q Consensus 402 l~ 403 (404)
+.
T Consensus 356 ~~ 357 (371)
T 3auy_A 356 IN 357 (371)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 136
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.43 E-value=6.9e-15 Score=141.80 Aligned_cols=133 Identities=12% Similarity=0.058 Sum_probs=85.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhh---h
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAW---L 291 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~---~ 291 (404)
+++.+++|.|+||||||||.+.|++++.+ .| . . ++.+.+|.|++.+++ .+.++|+.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLT-HEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCC-hHHHHHHhccccccch
Confidence 56889999999999999999999986542 12 0 1 344556699777664 588999987631 1
Q ss_pred hcCccCChhhHHHHHHHHHHHcCCCC----CccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 292 RLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
........+...+...+.++.+.-.. .....+... ...+||||+||+.+|++...+|+|||+||||+++|+.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y-~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKY-DKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCE-ETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccC-ccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 11001112222344556666553220 011111111 2469999999999973322299999999999999985
No 137
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.40 E-value=5.6e-16 Score=156.56 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=96.3
Q ss_pred cccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhhcce
Q 015591 193 EMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETFARV 265 (404)
Q Consensus 193 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~ 265 (404)
.++++++.++...+|+++ +. ++|++++|+|||||||||||++|+|...+. +|+|.+.|.++.. ...++.
T Consensus 145 ~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecccchhccCCcceEEEccc
Confidence 445555555556688888 54 899999999999999999999999977654 5999998876421 112233
Q ss_pred eEEee---------cCCCC--CCC----CCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 266 SGYCE---------QTDIH--SPQ----ITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 266 ~g~v~---------Q~~~~--~~~----~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
+++.+ |++.. +.. .|+.+++.++..-+.. .........+.++ .+..+++.+.. .. .
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~~~--~~-----~ 292 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEPFL--IS-----S 292 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCHHH--HH-----H
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcHHH--HH-----H
Confidence 45544 76543 232 5899999876421110 0011111112233 45566776532 21 3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEE
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIF 353 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLl 353 (404)
.|||||+|| |||+|+.+|++..
T Consensus 293 ~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 293 SLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHH--hhhhhcCCCCccC
Confidence 699999999 9999999999875
No 138
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.39 E-value=1.3e-16 Score=165.05 Aligned_cols=179 Identities=12% Similarity=0.086 Sum_probs=107.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
..+++++++.+++|+.++|+||||||||||+++|+|+.++. +|.|.++|.+.........++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 45789999999999999999999999999999999988764 5999998865211111233455554332112234444
Q ss_pred HHHHHhhhhcC----ccCChhhHH------------------HHHHHHHHHcCCCC--C-------ccccccCCCCCCCC
Q 015591 284 SVIFSAWLRLA----PEINSKTKA------------------EFVNEVLETIELDG--I-------KDSLVGIPGVNGLS 332 (404)
Q Consensus 284 ~l~~~~~~~~~----~~~~~~~~~------------------~~~~~~l~~l~l~~--~-------~~~~vg~~~~~~LS 332 (404)
++....+.+.. .++...+.. ..+.++++++.... . .+..+.. ...+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~--~~~~s 402 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQ--TMWVR 402 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEE--EEEES
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEE--EEEEe
Confidence 44332211100 011111100 01223333333211 1 1111110 12479
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE--EecCCCHHHHHhcc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVC--TIHQPSIDIFEAFD 399 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~--~tH~~~~~i~~~fd 399 (404)
+|||||.++|. + | |+|||+.....+++.|.++.+.|+|+++ +||+++ ++...++
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 99999877651 2 7 9999998887777777777666899985 899986 5665554
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=9.9e-13 Score=128.89 Aligned_cols=136 Identities=16% Similarity=0.068 Sum_probs=73.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-CCCCCceeeEEEECCccCch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCcc
Q 015591 219 LTALMGVSGAGKTTLLDVLAG-RKTTGSMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPE 296 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g-~~~~~~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~ 296 (404)
.+.|.||||+|||||+++|++ +..+. .|.+.++|.+... ...+..+++++|.+.+....+- ..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 102 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPG--VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-------------MG 102 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTT--CCC------------------CCEECSSEEEECCC----------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCC--CCeEEecceeecccccccceeeeecccceEEecHhh-------------cC
Confidence 389999999999999999999 55543 4999998875432 1124556788775532111100 00
Q ss_pred CChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 015591 297 INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376 (404)
Q Consensus 297 ~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l 376 (404)
... ...+++.++.+......+... .||| +..+|+++|+|||++ ||+.++..+.+.+.+.
T Consensus 103 ~~~---~~~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 103 NND---RIVIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp -CC---HHHHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred Ccc---hHHHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 000 011233333321111111110 2565 788999999999999 9999999999999886
Q ss_pred HhCCCeEEEEecCCC
Q 015591 377 VDTGRTIVCTIHQPS 391 (404)
Q Consensus 377 ~~~g~tii~~tH~~~ 391 (404)
. .+.++|+++|+++
T Consensus 162 ~-~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMS 175 (354)
T ss_dssp T-TTEEEEEEESCSC
T ss_pred c-CCCEEEEEeCCHH
Confidence 4 4789999999986
No 140
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.32 E-value=7.8e-13 Score=132.85 Aligned_cols=136 Identities=21% Similarity=0.238 Sum_probs=79.3
Q ss_pred eeeee-eeeeeCCcEEEEEcCCCCcHHHHHHHH--hCCCCCC---ceeeEEEECCccC-chhh---hcceeEEeecCCCC
Q 015591 206 LLYDV-TGSLRPGVLTALMGVSGAGKTTLLDVL--AGRKTTG---SMEGEIKIGGYPK-VQET---FARVSGYCEQTDIH 275 (404)
Q Consensus 206 iL~~v-s~~i~~Ge~~alvG~sGaGKSTLl~~L--~g~~~~~---~~~G~I~i~G~~~-~~~~---~~~~~g~v~Q~~~~ 275 (404)
-|+.+ ..-+++|++++|+||||||||||++.| .+..++. ...+.+++++... .... ..+.+++.+|
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---- 241 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---- 241 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----
Confidence 34443 367999999999999999999999954 4554331 1124677776542 1110 1111121111
Q ss_pred CCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH-HHHHHHHHHHHHh--cCCCEE
Q 015591 276 SPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST-EQRKRLTIAVELV--ANPSII 352 (404)
Q Consensus 276 ~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg-GqrqRl~IAraL~--~~p~iL 352 (404)
++.+|+.+ . ...+. .+.+.+.-+++++ .+|+++
T Consensus 242 ----~vleni~~------------------------------------~----~~~~~~~~~~~l~~~~~~l~~~~~~ll 277 (400)
T 3lda_A 242 ----DALNNVAY------------------------------------A----RAYNADHQLRLLDAAAQMMSESRFSLI 277 (400)
T ss_dssp ----HHHHTEEE------------------------------------E----ECCSHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred ----hHhhcEEE------------------------------------e----ccCChHHHHHHHHHHHHHHHhcCCceE
Confidence 12222111 0 01122 2233333333333 469999
Q ss_pred EEeCCCCCCCHHHH------------HHHHHHHHHHHhC-CCeEEEEecC
Q 015591 353 FMDEPTTGLDARAA------------AIIMRAVKNVVDT-GRTIVCTIHQ 389 (404)
Q Consensus 353 lLDEPtsgLD~~~~------------~~i~~~l~~l~~~-g~tii~~tH~ 389 (404)
++||||+.+|+... .++++.|++++++ |.|||+++|.
T Consensus 278 VIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 278 VVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp EEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred EecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 99999999996533 5678888888765 9999999998
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.32 E-value=6.6e-15 Score=134.57 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=88.1
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhh
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLR 292 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~ 292 (404)
.++|++++|+||||||||||+++|+|++.+. ...|.|.++|...... ..+++..... +
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~--------------------~~~~~~~~~~-~ 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR--------------------LLEPRGLLPR-K 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHH--------------------HHGGGTCGGG-T
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHH--------------------HHHHhccccc-C
Confidence 5789999999999999999999999976531 1246666655443211 1111100000 0
Q ss_pred cCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHH-HHHhcCCCEEEEeCCC-----------CC
Q 015591 293 LAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIA-VELVANPSIIFMDEPT-----------TG 360 (404)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IA-raL~~~p~iLlLDEPt-----------sg 360 (404)
.... ........+.+..+...+..+......+. .+|+||+||+++| ++++.++.++++|||. .-
T Consensus 78 ~~~~---~~~~~~~~~~l~~l~~~~~i~~p~~d~~~-~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~ 153 (208)
T 3c8u_A 78 GAPE---TFDFEGFQRLCHALKHQERVIYPLFDRAR-DIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIR 153 (208)
T ss_dssp TSGG---GBCHHHHHHHHHHHHHCSCEEEEEEETTT-TEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEE
T ss_pred CCCc---hhhHHHHHHHHHHHhcCCceecccCCccc-cCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEE
Confidence 0000 00111122223222111222223333333 5899999999998 8999999998999985 34
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEec
Q 015591 361 LDARAAAIIMRAVKNVVDTGRTIVCTIH 388 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l~~~g~tii~~tH 388 (404)
+|......+.+.+++..+.|+|.--+.|
T Consensus 154 vd~~~~~~~~R~~~R~~~~g~t~~~~~~ 181 (208)
T 3c8u_A 154 LEVPMADLEARLVQRWLDHGLNHDAAVA 181 (208)
T ss_dssp ECCCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 6777777777777776556765444433
No 142
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.31 E-value=1e-13 Score=134.39 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=80.7
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEE---CCccCchh--hhc-ceeEEeecCCCCC-----CCCCH
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI---GGYPKVQE--TFA-RVSGYCEQTDIHS-----PQITV 281 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i---~G~~~~~~--~~~-~~~g~v~Q~~~~~-----~~~Tv 281 (404)
.+.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|.+.... ..+ +.+||++|.+.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~--~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELR--TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCC--CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCc--ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34579999999999999999999999 87664 599999 88765321 122 2579999987543 67899
Q ss_pred HHHH--HHHhh----hhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHHHHHHHHHHH
Q 015591 282 EESV--IFSAW----LRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQRKRLTIAVE 344 (404)
Q Consensus 282 ~e~l--~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqRl~IAra 344 (404)
|++ .|+.. ++...-....+....++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 888 45410 111100111223356889999999975 556554 3599988999999873
No 143
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.27 E-value=1.9e-14 Score=139.73 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=74.4
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeee-------------------eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSL-------------------RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
++++||++.| .++++++++.+ ++|+++||+||||||||||+++|+|
T Consensus 38 i~~~~v~~~y---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 38 LSLEEVAEIY---------------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCHHHHHHTH---------------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred cchHhHHHHH---------------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 6677877755 24788899888 8999999999999999999999999
Q ss_pred CCC--CCceeeEEEE---CCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhh
Q 015591 240 RKT--TGSMEGEIKI---GGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLR 292 (404)
Q Consensus 240 ~~~--~~~~~G~I~i---~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~ 292 (404)
+.. + .+|+|.+ +|..... ..++.++++ |...+++.+|+.+++.+...++
T Consensus 103 ~l~~~~--~~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 103 LLSRWP--EHRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHTTST--TCCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhhCC--CCCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 755 4 3599999 8876532 234557888 7666778889999998865443
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.25 E-value=4.4e-15 Score=135.01 Aligned_cols=133 Identities=20% Similarity=0.193 Sum_probs=72.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----------ceeeEEEECCccC---chhhhcceeEEeecCCCCCCCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTG-----------SMEGEIKIGGYPK---VQETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-----------~~~G~I~i~G~~~---~~~~~~~~~g~v~Q~~~~~~~~T 280 (404)
++|++++|+||||||||||+++|+|+++.. +..|+ ++|.+. ....+++.+ .| +.+++..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~-~~~l~~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AA-GDFIEHAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HH-TCEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---Hc-CCCEeeee
Confidence 589999999999999999999999965310 12354 355432 122233322 23 22222333
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH----HHHHHH-HHhcCCCEEEEe
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK----RLTIAV-ELVANPSIIFMD 355 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq----Rl~IAr-aL~~~p~iLlLD 355 (404)
+.+|+ ++. ..+.++++++.-. ....+. + + .|-++ ++ +|+ +++.+|++++||
T Consensus 76 ~~~n~-~g~------------~~~~i~~~~~~~~-~~~~~~--~------~-~g~~~~~~~~~-~~~~~~l~~p~~~ild 131 (198)
T 1lvg_A 76 FSGNL-YGT------------SKEAVRAVQAMNR-ICVLDV--D------L-QGVRSIKKTDL-CPIYIFVQPPSLDVLE 131 (198)
T ss_dssp ETTEE-EEE------------EHHHHHHHHHTTC-EEEEEC--C------H-HHHHHHTTSSC-CCEEEEEECSCHHHHH
T ss_pred ecCcc-CCC------------CHHHHHHHHHcCC-cEEEEC--C------H-HHHHHHHhcCC-CcEEEEEeCCCHHHHH
Confidence 33333 210 1122344443210 001110 0 0 11111 12 456 788889999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 015591 356 EPTTGLDARAAAIIMRAVKNVV 377 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~ 377 (404)
|+|+++|..+++.|.+.|.++.
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~ 153 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAAR 153 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999999887764
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.23 E-value=3.4e-15 Score=142.79 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=95.9
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCC-CCCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTD-IHSPQ 278 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~-~~~~~ 278 (404)
...+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++.. ....+.+++++|.. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 456899999999999 999999999999999999997653 789999976432 12234466777653 33455
Q ss_pred CCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 015591 279 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPt 358 (404)
.++.|++.+....+.. ... + ......+... ..|||||+||+.|++|+..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r~~---------~~~----~--~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD---------RET----G--ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhcccCC---------Ccc----h--HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 5666665442211100 000 0 1122233333 259999999999999999999975 9986
Q ss_pred C------------CCCHHHHHHHHHHH
Q 015591 359 T------------GLDARAAAIIMRAV 373 (404)
Q Consensus 359 s------------gLD~~~~~~i~~~l 373 (404)
. --|...+..|++.+
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 4 34677777776654
No 146
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.17 E-value=1.1e-13 Score=135.71 Aligned_cols=153 Identities=18% Similarity=0.122 Sum_probs=92.1
Q ss_pred CceeeeeeeeeeeeCC-------cEEEEEcCCCCcHHHHHHHHhCCCCC--CceeeEEEECCccCch--hh-hcceeEEe
Q 015591 202 KKLRLLYDVTGSLRPG-------VLTALMGVSGAGKTTLLDVLAGRKTT--GSMEGEIKIGGYPKVQ--ET-FARVSGYC 269 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~G-------e~~alvG~sGaGKSTLl~~L~g~~~~--~~~~G~I~i~G~~~~~--~~-~~~~~g~v 269 (404)
+...+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.++.. .. .++.+.++
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 4456899999999877 89999999999999999999996421 1235666555543221 11 13568899
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhhcCcc-CChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcC
Q 015591 270 EQTDIHSPQITVEESVIFSAWLRLAPE-INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVAN 348 (404)
Q Consensus 270 ~Q~~~~~~~~Tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~ 348 (404)
.|.+.+.+ ++.|++..........- .......+.++..+..+++.. +++.. ..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII------ 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE------
T ss_pred cchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce------
Confidence 88665544 78888854322111000 001111223333344344433 33332 36999999998654
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 015591 349 PSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378 (404)
Q Consensus 349 p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~ 378 (404)
.+||+.+...+.++|++.++
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHHH
T ss_pred ----------eeCCCCCHHHHHHHHHHHHH
Confidence 67778788888888888764
No 147
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.13 E-value=1.6e-10 Score=111.40 Aligned_cols=129 Identities=16% Similarity=0.066 Sum_probs=86.7
Q ss_pred eeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHH
Q 015591 208 YDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIF 287 (404)
Q Consensus 208 ~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~ 287 (404)
+++++. +|++++++|+||+||||++..|++...+. .|+|.+.+.+...... . +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~------~-------------~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAA------R-------------EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHH------H-------------HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhH------H-------------HHH--
Confidence 678888 99999999999999999999999976532 3778776654321100 0 000
Q ss_pred HhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHH
Q 015591 288 SAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP-TTGLDARAA 366 (404)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEP-tsgLD~~~~ 366 (404)
..+.+..++.-... + ......+.+|.+|+++...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01112234432110 0 12345566789999998899999999999 999999888
Q ss_pred HHHHHHHHHHHhCCCeEEEEec
Q 015591 367 AIIMRAVKNVVDTGRTIVCTIH 388 (404)
Q Consensus 367 ~~i~~~l~~l~~~g~tii~~tH 388 (404)
..+.+..+.+. ...+++++..
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~~~ 220 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVLDA 220 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEEEG
T ss_pred HHHHHHhhhcC-CCEEEEEEeC
Confidence 88887776653 3455555543
No 148
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.11 E-value=2.4e-13 Score=136.05 Aligned_cols=156 Identities=10% Similarity=0.112 Sum_probs=102.0
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCC----------CCCceeeEEEECCccCch--h--hhccee---EEeecCCCC
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRK----------TTGSMEGEIKIGGYPKVQ--E--TFARVS---GYCEQTDIH 275 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~----------~~~~~~G~I~i~G~~~~~--~--~~~~~~---g~v~Q~~~~ 275 (404)
.+++|..++|+|+||||||||+|+|+|.. +..+..|.+.++|..... . ..++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 123457999998843211 0 112222 355565666
Q ss_pred CCCCCHHHHH--HHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCC--CE
Q 015591 276 SPQITVEESV--IFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP--SI 351 (404)
Q Consensus 276 ~~~~Tv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p--~i 351 (404)
....+..|++ .|...++.. +.++..++..+ +.. ...++++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~~-----i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DAE-----IIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TTC-----SSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cce-----eeeecccc------------Ccchhh
Confidence 6666665554 333322211 11222222221 111 11255542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCeEEEEecCCCHHHHHhccccc
Q 015591 352 IFMDEPTTGLDARAAAIIMRAVKNV-VDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 352 LlLDEPtsgLD~~~~~~i~~~l~~l-~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+++|||+.++|+....+.++.++++ .+.|.|++ +|... ++.+.||+++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~ 193 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVY 193 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHH
Confidence 9999999999999999999999988 66677764 99875 6788888775
No 149
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.10 E-value=3.6e-11 Score=116.55 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=75.2
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFS 288 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~ 288 (404)
.+++..++|++++|+|+|||||||++..|++...+. .|+|.+.+.+.. +. ...|.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~----r~---------------~a~eq---- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTF----RA---------------AAIEQ---- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTT----CH---------------HHHHH----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccc----cH---------------HHHHH----
Confidence 356667899999999999999999999999976532 366766554321 00 00111
Q ss_pred hhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHH
Q 015591 289 AWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL---TIAVELVANPSIIFMDEPTTGLDARA 365 (404)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl---~IAraL~~~p~iLlLDEPtsgLD~~~ 365 (404)
...+.+.+++.. + ...|+|+.+++ ++++++..+|+++|+|||.. ...
T Consensus 151 -----------------L~~~~~~~gl~~-----~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~ 200 (306)
T 1vma_A 151 -----------------LKIWGERVGATV-----I-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHT 200 (306)
T ss_dssp -----------------HHHHHHHHTCEE-----E-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSC
T ss_pred -----------------HHHHHHHcCCcE-----E-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhh
Confidence 122333445432 1 14789999999 99999999999999999974 233
Q ss_pred HHHHHHHHHHH
Q 015591 366 AAIIMRAVKNV 376 (404)
Q Consensus 366 ~~~i~~~l~~l 376 (404)
...+++.|+++
T Consensus 201 ~~~l~~eL~~l 211 (306)
T 1vma_A 201 KKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455444444
No 150
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.09 E-value=1e-11 Score=120.06 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=65.0
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEE---CCccCchh--hh-cceeEEeecCCC-----------
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI---GGYPKVQE--TF-ARVSGYCEQTDI----------- 274 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i---~G~~~~~~--~~-~~~~g~v~Q~~~----------- 274 (404)
|.+.+|++++|+||||||||||+|+|+|+..+. +|+|.+ +|.+.... .. .+.+||++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~--~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR--VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC---------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc--ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 345679999999999999999999999988764 599999 88765321 11 135799999864
Q ss_pred -----CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCcccc
Q 015591 275 -----HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSL 322 (404)
Q Consensus 275 -----~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~ 322 (404)
++|.+|+ ||+.|+.. .. ..+....+.++++.++|. +..+..
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~~-~~-----~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSDC-NH-----VDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTTC-CS-----SSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCCC-cC-----CCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 4788888 98888531 11 112234578899999985 444444
No 151
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.09 E-value=9.6e-12 Score=120.58 Aligned_cols=119 Identities=21% Similarity=0.192 Sum_probs=65.8
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEE---CCccCch-hhhcce-eEEeecCCCCCC----CCCHH
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI---GGYPKVQ-ETFARV-SGYCEQTDIHSP----QITVE 282 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i---~G~~~~~-~~~~~~-~g~v~Q~~~~~~----~~Tv~ 282 (404)
+++.+|++++|+||||+|||||+|+|+|...+ .+|+|.+ +|+.... ....+. .||++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL--RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc--cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 56789999999999999999999999998765 3599998 7765432 112222 799999876654 6789
Q ss_pred HHHH--HHhh--h----hcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 283 ESVI--FSAW--L----RLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 283 e~l~--~~~~--~----~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
|++. |... + +...-....+....++++++.+++.+...... ..++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 3311 1 10100011122345788999999875332221 1477777763
No 152
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.09 E-value=8e-12 Score=115.69 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=41.1
Q ss_pred cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHH-------HHHhcccccc
Q 015591 347 ANPSIIFMDEPTTGL--DARAAAIIMRAVKNVV-DTGRTIVCTIHQPSID-------IFEAFDEVKQ 403 (404)
Q Consensus 347 ~~p~iLlLDEPtsgL--D~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~-------i~~~fd~~l~ 403 (404)
.+|+++++|+|++.+ |+....+++..+.+++ +.|.|||+++|..... +.+.+|.++.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~ 193 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIR 193 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEE
Confidence 579999999999988 6544555666666654 5699999999987531 4567787764
No 153
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.06 E-value=4.7e-14 Score=130.75 Aligned_cols=39 Identities=28% Similarity=0.225 Sum_probs=22.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh-CCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA-GRKT 242 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~-g~~~ 242 (404)
.+..+++||++++|++++|+||||||||||+++|+ |+.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34688999999999999999999999999999999 9764
No 154
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.03 E-value=1.2e-10 Score=118.93 Aligned_cols=175 Identities=13% Similarity=0.119 Sum_probs=103.8
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee-EEEECCccCchhhhc-ceeEEeecCCCCCCCCCH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG-EIKIGGYPKVQETFA-RVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G-~I~i~G~~~~~~~~~-~~~g~v~Q~~~~~~~~Tv 281 (404)
...|+++.+-+++|+++.|.|++|+|||||+..+++..... .| .|.+.+.......+. |..+.... ...
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMRMLCAEGN-------INA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH
Confidence 34788999889999999999999999999999998743211 13 344333222211111 11000000 000
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTT 359 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~--~~p~iLlLDEPts 359 (404)
+.+. .. .... +....+.+.++.++..++. +..+ .++|.+|.+ +.++.++ .+|+++++|+++.
T Consensus 261 -~~l~------~g-~l~~-~~~~~~~~a~~~l~~~~l~---i~d~--~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QNLR------TG-KLTP-EDWGKLTMAMGSLSNAGIY---IDDT--PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HHHH------TS-CCCH-HHHHHHHHHHHHHHSSCEE---EECC--TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HHHh------cC-CCCH-HHHHHHHHHHHHHhcCCEE---EECC--CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 1111 00 1111 2223344455544433322 1111 258999876 5667776 6799999999998
Q ss_pred CCC--------HHHHHHHHHHHHHHHhC-CCeEEEEec---------C--CC-------HHHHHhcccccc
Q 015591 360 GLD--------ARAAAIIMRAVKNVVDT-GRTIVCTIH---------Q--PS-------IDIFEAFDEVKQ 403 (404)
Q Consensus 360 gLD--------~~~~~~i~~~l~~l~~~-g~tii~~tH---------~--~~-------~~i~~~fd~~l~ 403 (404)
..+ ......+.+.|++++++ |.+||+++| + |. ..+.+.+|.++.
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~ 395 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAF 395 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEE
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEE
Confidence 774 23446778888888754 999999999 2 42 146777888774
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.02 E-value=1.3e-13 Score=131.44 Aligned_cols=130 Identities=18% Similarity=0.200 Sum_probs=84.2
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCC-CCCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTD-IHSPQ 278 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~-~~~~~ 278 (404)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.+++.+... ...++.+++++|.. ...+.
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 346899999999999 99999999999999999999654 3889998865321 11223455666653 24556
Q ss_pred CCHHHHHHHHhhhhcCc-cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 015591 279 ITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 357 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEP 357 (404)
.++.|++......+... .....+..+.+.+++. .|||||+||+.|++++..+|++ ||++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 67777774322111100 0001111222222221 4889999999999999999987 6766
Q ss_pred C
Q 015591 358 T 358 (404)
Q Consensus 358 t 358 (404)
.
T Consensus 195 l 195 (278)
T 1iy2_A 195 L 195 (278)
T ss_dssp H
T ss_pred H
Confidence 3
No 156
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.99 E-value=2e-13 Score=128.08 Aligned_cols=143 Identities=19% Similarity=0.214 Sum_probs=90.7
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCC-CCCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTD-IHSPQ 278 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~-~~~~~ 278 (404)
...+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+... ...++.+++++|.. ...+.
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 345899999999999 99999999999999999999654 3788888865321 11223355666653 24556
Q ss_pred CCHHHHHHHHhhhhcCc-cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 015591 279 ITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 357 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEP 357 (404)
.++.|++......+... .....+..+.+.+++. .|||||+||+.|++++..+|++ +|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 67777774322111100 0011112222333322 3788999999999999999987 6776
Q ss_pred CC------------CCCHHHHHHHHH
Q 015591 358 TT------------GLDARAAAIIMR 371 (404)
Q Consensus 358 ts------------gLD~~~~~~i~~ 371 (404)
.- -.|...+..|++
T Consensus 171 l~r~~rf~~~i~i~~p~~~~r~~il~ 196 (254)
T 1ixz_A 171 LLRPGRFDRQIAIDAPDVKGREQILR 196 (254)
T ss_dssp GGSTTSSCEEEECCSCCHHHHHHHHH
T ss_pred HcCCCcCCeEEeeCCcCHHHHHHHHH
Confidence 53 235666666554
No 157
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.97 E-value=1.8e-11 Score=129.28 Aligned_cols=161 Identities=14% Similarity=0.109 Sum_probs=99.8
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCC-------
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDI------- 274 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~------- 274 (404)
+...+++++++.+++|+.++|+||||+|||||+++|++...+. .-|.+.+++.+.. .....++++++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~--~~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPED--ENMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTC--TTSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCccc--ccCCcEEEEecchHHHHHHHH
Confidence 4566899999999999999999999999999999999977653 2388888887643 23455778776320
Q ss_pred ---------------CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHH
Q 015591 275 ---------------HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL 339 (404)
Q Consensus 275 ---------------~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl 339 (404)
.+..+++.+|+.............. .......++. +..+..... ..++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~~L~---G~~~~~~~~-----~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAGALL---GDVRHDPFQ-----SGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHHHHH---CEECCCCC---------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHHhcC---ceEEechhh-----cCCccccccccc
Confidence 1111122222211000000000000 0000011222 211111111 125999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~ 375 (404)
..++....++.+|||||... |++..+..+.+.|++
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899998888888875
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.96 E-value=1.1e-11 Score=127.71 Aligned_cols=166 Identities=10% Similarity=0.125 Sum_probs=93.9
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCC--CCCHHHH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSP--QITVEES 284 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g--~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~--~~Tv~e~ 284 (404)
.+++.+.++..+.|.|++||||||+++.|.. +....+ |++.+.+.+.....+.. | ..-+++.. -....+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p--~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP--EDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT--TTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC--ceEEEEEECCchhhhhh---h-ccCCcccceeecCHHHH
Confidence 4678888899999999999999999999875 333322 55554443322111111 0 00011100 0122222
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccc--cccCCCCCCCCHHHHHHH----------HHHHHHhcCCC-E
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS--LVGIPGVNGLSTEQRKRL----------TIAVELVANPS-I 351 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~vg~~~~~~LSgGqrqRl----------~IAraL~~~p~-i 351 (404)
...-.++ ..+..++ .+.+...++.++.+. .+. ..+|+||+||. .+|+++...|. +
T Consensus 233 ~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 233 ANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEE
Confidence 2111111 1122233 366777777665332 111 13678877652 35666778898 7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh----CCCeEEEEecCCCHH
Q 015591 352 IFMDEPTTGLDARAAAIIMRAVKNVVD----TGRTIVCTIHQPSID 393 (404)
Q Consensus 352 LlLDEPtsgLD~~~~~~i~~~l~~l~~----~g~tii~~tH~~~~~ 393 (404)
+++||+++-+|.. ...+.+.|.++++ .|.++|++||+|+.+
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~d 345 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVD 345 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTT
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccc
Confidence 8999999988843 3455566655543 377999999999843
No 159
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.96 E-value=1.5e-10 Score=118.59 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=46.1
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
..+|+|+||++++ ++++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD--LTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC--TTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC--CCEEEECCEEc
Confidence 4589999999999 999999999999999999999987764 59999999764
No 160
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.91 E-value=1.5e-09 Score=97.12 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l 376 (404)
.+...+|++++.+|+++++| ||++|..+..++++.|.+.
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999 9999999999999888653
No 161
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.90 E-value=2.1e-09 Score=105.99 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCeEEEEecCCC
Q 015591 337 KRLTIAVELVAN--PSIIFMDEPTTGL----------DA---RAAAIIMRAVKNV----VDTGRTIVCTIHQPS 391 (404)
Q Consensus 337 qRl~IAraL~~~--p~iLlLDEPtsgL----------D~---~~~~~i~~~l~~l----~~~g~tii~~tH~~~ 391 (404)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|.|||+++|..+
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 445678888765 9999999999988 32 2222344455554 345999999999653
No 162
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.88 E-value=2.3e-09 Score=103.36 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=76.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA 294 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~ 294 (404)
++|++++++|+||+||||++..|++...+. +| +.+.++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE--KH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT--TC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 479999999999999999999999865431 24 23455555331 234555554321
Q ss_pred ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 015591 295 PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374 (404)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~ 374 (404)
+..++.... ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 112222110 1222 33345555 45999999999 89999876655544433
Q ss_pred HHHh--C-CCeEEE-EecCCCHHHHHhcccc
Q 015591 375 NVVD--T-GRTIVC-TIHQPSIDIFEAFDEV 401 (404)
Q Consensus 375 ~l~~--~-g~tii~-~tH~~~~~i~~~fd~~ 401 (404)
-+.. . +.++++ ++|... ++.+.+|++
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~ 236 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRF 236 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTT
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHH
Confidence 3321 2 233444 378754 566666653
No 163
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.88 E-value=7.6e-11 Score=106.27 Aligned_cols=69 Identities=22% Similarity=0.200 Sum_probs=45.8
Q ss_pred eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCCHHHHH
Q 015591 211 TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQITVEESV 285 (404)
Q Consensus 211 s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l 285 (404)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..... ...+..++|++|+...++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56778999999999999999999999999753 34555543211 12245678999876555555555444
No 164
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.76 E-value=5.8e-12 Score=125.51 Aligned_cols=143 Identities=12% Similarity=0.101 Sum_probs=78.8
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCC-CCCCCHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIH-SPQITVE 282 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~-~~~~Tv~ 282 (404)
..+++++++.+++|++++|+||||||||||+++|+|.. .|.+..-..+. ..+...+++++|...+ +...+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHH
Confidence 45899999999999999999999999999999999843 37766522111 1112235566664321 1121111
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHH---cCCCC-Cc---ccc-----ccCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLET---IELDG-IK---DSL-----VGIPGVNGLSTEQRKRLTIAVELVANPS 350 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~---l~l~~-~~---~~~-----vg~~~~~~LSgGqrqRl~IAraL~~~p~ 350 (404)
.++ .+.............+...++- +.+.. .. +.+ +.. ....+++|++||+..+++++.+|+
T Consensus 229 ~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~-~~~~l~~~~~~rl~~~~~l~~~pD 302 (377)
T 1svm_A 229 GGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTM-NEYSVPKTLQARFVKQIDFRPKDY 302 (377)
T ss_dssp TTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEE-CSCCCCHHHHTTEEEEEECCCCHH
T ss_pred HHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccCh-hHHhhcHHHHHHHhhhhccCCCCC
Confidence 100 0000000000001222333320 00110 00 000 000 123589999999999888888999
Q ss_pred EEE-EeCCCC
Q 015591 351 IIF-MDEPTT 359 (404)
Q Consensus 351 iLl-LDEPts 359 (404)
+++ ||+|+.
T Consensus 303 LliyLd~~~~ 312 (377)
T 1svm_A 303 LKHCLERSEF 312 (377)
T ss_dssp HHHHHHTCTH
T ss_pred eEEEEeCCHH
Confidence 876 999876
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.71 E-value=3.5e-09 Score=94.96 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l 376 (404)
...|++++.+|+++++| ||++|.....++++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999999998887664
No 166
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.70 E-value=1.5e-08 Score=103.83 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH----hCCCeEEEEecCCC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPT----------TGLDARAAAIIMRAVKNVV----DTGRTIVCTIHQPS 391 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPt----------sgLD~~~~~~i~~~l~~l~----~~g~tii~~tH~~~ 391 (404)
+++++|-.+++|....|.+||+||+. +|.|......+.+++..+- ..+..||.+||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 67788889999999999999999993 4677776666667766653 24678999999985
No 167
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.68 E-value=7.8e-10 Score=102.62 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=40.0
Q ss_pred eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-----------hhhcceeEEeecC
Q 015591 211 TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-----------ETFARVSGYCEQT 272 (404)
Q Consensus 211 s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-----------~~~~~~~g~v~Q~ 272 (404)
++++.+ ++++|+||||||||||+++|+|...+. +|+|.++|.+... ...++.++|++|.
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD--LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC--TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC--CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 899999999999999999999987764 5999999876511 1134568999974
No 168
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.61 E-value=7.6e-09 Score=102.16 Aligned_cols=49 Identities=22% Similarity=0.197 Sum_probs=34.8
Q ss_pred eeeeee--eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeE-EEECCcc
Q 015591 206 LLYDVT--GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGE-IKIGGYP 256 (404)
Q Consensus 206 iL~~vs--~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~-I~i~G~~ 256 (404)
-|+.+- +-+++|+++.|.||+|||||||+..+++..... .|. +++++..
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEeccc
Confidence 344443 368999999999999999999999998753221 143 3555543
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.58 E-value=2.1e-09 Score=97.12 Aligned_cols=72 Identities=19% Similarity=0.094 Sum_probs=47.8
Q ss_pred eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh--hhcceeEEeecCCCCCCCCCHHHHHHHH
Q 015591 211 TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE--TFARVSGYCEQTDIHSPQITVEESVIFS 288 (404)
Q Consensus 211 s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~--~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~ 288 (404)
.+..++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...++++|+....+.+++.+++...
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHH
Confidence 3556789999999999999999999999853 7888888764321 1122457777765444455666666543
No 170
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.57 E-value=1.2e-07 Score=93.86 Aligned_cols=150 Identities=16% Similarity=0.217 Sum_probs=83.5
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHhCCCCC---------CceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH--
Q 015591 216 PGVL-TALMGVSGAGKTTLLDVLAGRKTT---------GSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE-- 283 (404)
Q Consensus 216 ~Ge~-~alvG~sGaGKSTLl~~L~g~~~~---------~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e-- 283 (404)
+|-. ++|+|++|||||||+|.|+|.... ++..|.|.++|.++. +....|++.+. +...+..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~l----p~~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGI----PPQIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSC----CGGGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcC----CHHHHHHHH
Confidence 3444 999999999999999999996431 134688999885431 12234554432 1112211
Q ss_pred -HHHHHh--h-hhcCccCCh-----hhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHH----HHH-hcCC
Q 015591 284 -SVIFSA--W-LRLAPEINS-----KTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIA----VEL-VANP 349 (404)
Q Consensus 284 -~l~~~~--~-~~~~~~~~~-----~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IA----raL-~~~p 349 (404)
.+.... . +-..-..+. .+..+.+.++++.+++.+..--.+... ...+|++++||+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 111100 0 000001111 122234566777776654331111111 123687888888877 555 4444
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 015591 350 SIIFMDEPTTGLDARAAAIIMRAVKNVV 377 (404)
Q Consensus 350 ~iLlLDEPtsgLD~~~~~~i~~~l~~l~ 377 (404)
++ +|+|++|......+.+.|.++.
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHh
Confidence 54 7999999999999999988765
No 171
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.50 E-value=1e-07 Score=103.30 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEE-ecCCCHHHHHhccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTT-GLDARAAAIIMRAVKNVVDTGRTIVCT-IHQPSIDIFEAFDE 400 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~-tH~~~~~i~~~fd~ 400 (404)
-+|.|+.+|..+++.++.+++++|+|||.. +||......+++.+.+.....++|+++ ||+++ ++.+.|++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~ 261 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFND 261 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTS
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcC
Confidence 379999999999999999999999999997 999887777777666554446778885 88764 56667764
No 172
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.48 E-value=2e-07 Score=91.89 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe--cCCC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMD-EPTTGLDARAAAIIMRAVKNVVDTGRTIVCTI--HQPS 391 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLD-EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~t--H~~~ 391 (404)
.+|++++|++. +.+...++-++++| +|++++|......+++.+.+... +..+|++. ||..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 58999998876 55556677788999 99999999988888887776543 78888888 8874
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.44 E-value=4.3e-08 Score=104.58 Aligned_cols=133 Identities=15% Similarity=0.099 Sum_probs=75.5
Q ss_pred eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHH
Q 015591 211 TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV---QETFARVSGYCEQTDIHSPQITVEESVIF 287 (404)
Q Consensus 211 s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~ 287 (404)
|+.+++|..++|+|++|+|||||++.|++........|+| .+|.... ....++.+++..|...+... +++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~----- 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR----- 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE-----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE-----
Confidence 3567889999999999999999999999754332234776 4554321 12233444554442211100 000
Q ss_pred HhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 015591 288 SAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367 (404)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~ 367 (404)
..+.|+ ||...++ .......-..+..++++| |+.|+++.++.
T Consensus 76 ----------------------------~nliDT----pG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 76 ----------------------------VFLLDA----PGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ----------------------------EEEEEC----CCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ----------------------------EEEEeC----CCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 011222 2211222 112223335678889999 99999988763
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCH
Q 015591 368 IIMRAVKNVVDTGRTIVCTIHQPSI 392 (404)
Q Consensus 368 ~i~~~l~~l~~~g~tii~~tH~~~~ 392 (404)
. ++.+.+.+.++|++.|..+.
T Consensus 118 ~----~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 A----WTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp H----HHHHHHTTCCEEEEEECGGG
T ss_pred H----HHHHHHccCCEEEEecCCch
Confidence 3 33333468899999998764
No 174
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.43 E-value=1.8e-08 Score=94.79 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=35.1
Q ss_pred EEEEece-eEEeeccccccccccccCceeeeeeeeeeeeC---CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 178 TVAFQDL-KYYIDTPLEMRERGFTEKKLRLLYDVTGSLRP---GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 178 ~i~~~~l-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|+ ++.|. +..++|+|+|+++++ |++++|+|++||||||+.++|++.
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4888898 88662 235699999999999 999999999999999999999974
No 175
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.43 E-value=1.3e-07 Score=92.54 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=81.1
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
.-|+.+..-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.- .++..+-
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEES------SSCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEeC------CCCHHHH
Confidence 356777778999999999999999999999888742110 11 12333321 2333221
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
.. +.......+++..+.+ | .||.++.+|+..|...+.+++++|.|+|...+|
T Consensus 90 ~~------------------Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-- 141 (338)
T 4a1f_A 90 AL------------------RALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-- 141 (338)
T ss_dssp HH------------------HHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH--
T ss_pred HH------------------HHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH--
Confidence 11 1111111111111111 1 499999999999999999999999999865433
Q ss_pred HHHHHHHHHHHHHh-C-CCeEEEEec
Q 015591 365 AAAIIMRAVKNVVD-T-GRTIVCTIH 388 (404)
Q Consensus 365 ~~~~i~~~l~~l~~-~-g~tii~~tH 388 (404)
.|...++++.+ . |..+|+|-|
T Consensus 142 ---~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 ---QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp ---HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ---HHHHHHHHHHHhcCCCCEEEEec
Confidence 55566666653 4 688888865
No 176
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.39 E-value=1.1e-07 Score=83.96 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=31.1
Q ss_pred eeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 208 YDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 208 ~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
+++++.+.+| +++|+||||||||||+++|.+...
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 6889999999 999999999999999999998554
No 177
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.36 E-value=1.3e-06 Score=86.07 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEec
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG-RTIVCTIH 388 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~tH 388 (404)
.+..++++..+++..+.+|++++|.-..+..|... ....+.++.+...| ++++++++
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764333445433 44566677765555 57777775
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.36 E-value=1.9e-08 Score=90.78 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=42.2
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEE--EECCccC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEI--KIGGYPK 257 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I--~i~G~~~ 257 (404)
.....+..++..++|++++|+||||||||||+++|+++.. ..|.+ +++|.++
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 3456778888889999999999999999999999999654 13666 8887543
No 179
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.35 E-value=4.2e-08 Score=92.07 Aligned_cols=76 Identities=20% Similarity=0.066 Sum_probs=52.0
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh---CCCCCCceeeEEE--------ECCccCc----hhhhcceeEEee
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA---GRKTTGSMEGEIK--------IGGYPKV----QETFARVSGYCE 270 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~---g~~~~~~~~G~I~--------i~G~~~~----~~~~~~~~g~v~ 270 (404)
++++.+ ++|++++|+|||||||||++++|+ |+..+ .+|.+. .+|.+.. ...+++.+++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL--DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC--CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 444544 789999999999999999999999 87665 469988 8887652 134566788888
Q ss_pred cCC-----CCCCCCCHHHHHH
Q 015591 271 QTD-----IHSPQITVEESVI 286 (404)
Q Consensus 271 Q~~-----~~~~~~Tv~e~l~ 286 (404)
|.+ ..++..++.+++.
T Consensus 94 ~~~~~~~~~~l~~~~v~~~i~ 114 (252)
T 4e22_A 94 VSQNGQLQVILEGEDVSNEIR 114 (252)
T ss_dssp EEETTEEEEEETTEECTTGGG
T ss_pred ecCCCCceEEECCeehhHHHH
Confidence 643 2234445555543
No 180
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.35 E-value=1.1e-09 Score=112.81 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=76.5
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh---hhcceeEEeecCCC-CCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE---TFARVSGYCEQTDI-HSPQI 279 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~---~~~~~~g~v~Q~~~-~~~~~ 279 (404)
..+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+.... ...+.+..++|... ..+..
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 34788999999999 99999999999999999999654 37888888653211 11223344555432 23444
Q ss_pred CHHHHHHHHhhhhcCc-cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 015591 280 TVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPt 358 (404)
.+.|++......+... .....+..+.+.+++. .||||++|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 5555553221111100 0011222233344443 2566666666677777777766 67765
Q ss_pred C
Q 015591 359 T 359 (404)
Q Consensus 359 s 359 (404)
-
T Consensus 187 l 187 (499)
T 2dhr_A 187 L 187 (499)
T ss_dssp S
T ss_pred c
Confidence 3
No 181
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=2.9e-07 Score=82.77 Aligned_cols=39 Identities=28% Similarity=0.084 Sum_probs=24.4
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
...+++||||.+++|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 356899999999999999999999999999999999743
No 182
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.29 E-value=1.4e-07 Score=83.96 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
|++++|+||||||||||+++|+|+.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999765
No 183
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.29 E-value=1.4e-07 Score=91.80 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=57.4
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhh-----cceeEEe-ecCC
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETF-----ARVSGYC-EQTD 273 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~-----~~~~g~v-~Q~~ 273 (404)
+++++|.+++|++++++|+||+||||++..|++...+. .|+|.+.+.+... ..+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 47899999999999999999999999999999965532 4888887766421 122 4457888 6654
Q ss_pred CCCCCCCHHHHHHHH
Q 015591 274 IHSPQITVEESVIFS 288 (404)
Q Consensus 274 ~~~~~~Tv~e~l~~~ 288 (404)
...|..++++++...
T Consensus 173 ~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 173 NADPASVVFDAIKKA 187 (320)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 444444566666543
No 184
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.25 E-value=4.5e-07 Score=81.26 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=27.0
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT 243 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~ 243 (404)
+++++|++++|+||||||||||+++|+++..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 35789999999999999999999999998744
No 185
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.23 E-value=2.9e-06 Score=83.22 Aligned_cols=44 Identities=9% Similarity=0.042 Sum_probs=35.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCeEEEEecCCC
Q 015591 347 ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD---TGRTIVCTIHQPS 391 (404)
Q Consensus 347 ~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~---~g~tii~~tH~~~ 391 (404)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888776654 5788999999874
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.21 E-value=9.3e-06 Score=77.13 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCeEEEEecCC---CHHH
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDAR----------AAAIIMRAVKNVVD----TGRTIVCTIHQP---SIDI 394 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~----------~~~~i~~~l~~l~~----~g~tii~~tH~~---~~~i 394 (404)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.+|+++ ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 457777778888888899999999998766532 22234444443321 234677888875 4556
Q ss_pred HHhccccc
Q 015591 395 FEAFDEVK 402 (404)
Q Consensus 395 ~~~fd~~l 402 (404)
...|++.+
T Consensus 177 ~~R~~~~i 184 (297)
T 3b9p_A 177 LRRFTKRV 184 (297)
T ss_dssp HHHCCEEE
T ss_pred HhhCCeEE
Confidence 66777554
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.19 E-value=1.7e-07 Score=84.42 Aligned_cols=69 Identities=6% Similarity=-0.016 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH-HHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSID-IFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~-i~~~fd~~l~ 403 (404)
.+.|+.+|..+++....+|+.+..+ ++.++|.....+.+.++.. .+.++|+.+|.+... +...||.++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~ 129 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILV 129 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEE
Confidence 3678888999998888887654332 3355666655555544432 356888888876422 3556776653
No 188
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.18 E-value=3.5e-07 Score=84.40 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=36.3
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
+-+...++|++++|.|+||||||||+++|+|. .|+|.+.+.+.
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 34556689999999999999999999999986 27888888763
No 189
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.14 E-value=7.7e-07 Score=78.83 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=29.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEE
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI 252 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i 252 (404)
.+|++++|+||||||||||+++|++..++ ...|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 36899999999999999999999997542 13455544
No 190
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.09 E-value=2.2e-06 Score=82.95 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=78.3
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
.-|+++..-+++|+++.|.|++|+|||||+..++...-. .| ..+.|+.- .++..+-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---~g---------------~~vl~~sl------E~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---ND---------------DVVNLHSL------EMGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---TT---------------CEEEEEES------SSCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cC---------------CeEEEEEC------CCCHHHH
Confidence 467788878999999999999999999999888742100 01 12334332 1233221
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
.. +.......+++.++.+ | ...||.++++|+..|...+.++++++.|+|...
T Consensus 112 ~~------------------R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 IK------------------RLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp HH------------------HHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred HH------------------HHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 11 0111111111111110 0 002888999999999998888899999988643
Q ss_pred HHHHHHHHHHHHHhC-CCe--EEEEec
Q 015591 365 AAAIIMRAVKNVVDT-GRT--IVCTIH 388 (404)
Q Consensus 365 ~~~~i~~~l~~l~~~-g~t--ii~~tH 388 (404)
...+...++++.++ |.. +|++-|
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 23455566666543 666 787765
No 191
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.07 E-value=4.9e-06 Score=80.03 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--eEEEEecCCCHHHHHhccccc
Q 015591 331 LSTEQRKRLTIAVELV--ANPSIIFMDEPTTGLDARA-AAIIMRAVKNVVDT-GR--TIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 331 LSgGqrqRl~IAraL~--~~p~iLlLDEPtsgLD~~~-~~~i~~~l~~l~~~-g~--tii~~tH~~~~~i~~~fd~~l 402 (404)
+|.|++ .+++.+. ..|.++++ +.+|... +..+.+.++++.+. |. .+.+++|+-. .+-+++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 888886 4566666 67888888 7889876 66777888888754 53 5666777654 4666666543
No 192
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.02 E-value=2.4e-06 Score=77.49 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=26.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTT 243 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~ 243 (404)
++|++++|+||||||||||++.|++..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999997654
No 193
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.01 E-value=3.4e-06 Score=85.50 Aligned_cols=45 Identities=13% Similarity=0.277 Sum_probs=37.8
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 347 ANPSIIFMDEPTTGLDA-RAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 347 ~~p~iLlLDEPtsgLD~-~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.+|++|++||+..-.+. .++..+...+..+.+.|+.||+++|++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 38999999999887664 6777888999888777999999999854
No 194
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.97 E-value=3.4e-07 Score=89.07 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=35.6
Q ss_pred CceeeeeeeeeeeeCCc------EEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 202 KKLRLLYDVTGSLRPGV------LTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge------~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
+..+.|++++..+.+++ ++||+||||||||||+++|+++..
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44668888888888877 999999999999999999998654
No 195
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.96 E-value=2.5e-05 Score=76.45 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=28.4
Q ss_pred eeeee-eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 207 LYDVT-GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 207 L~~vs-~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
|+.+- +-+++|+++.|.||+|+|||||+..++.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44443 5799999999999999999999998886
No 196
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.94 E-value=2.9e-06 Score=76.80 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=25.8
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999999998653
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.92 E-value=2.3e-06 Score=74.83 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=31.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+|++++|+|+|||||||++++|++.. |.+.+++.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 569999999999999999999999752 6677877553
No 198
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.90 E-value=1.9e-05 Score=79.81 Aligned_cols=27 Identities=37% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
++.+++++|++|+||||++..|++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999997543
No 199
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.90 E-value=1.1e-05 Score=77.21 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=26.5
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+.++++..+.|.||+|+|||||++.|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346789999999999999999999999754
No 200
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.90 E-value=5.6e-06 Score=80.72 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998743
No 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.88 E-value=2.1e-06 Score=77.39 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=33.5
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|++++|+|+||||||||++.|++...+. .|.|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~--~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ--GISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCeEEEeccC
Confidence 35789999999999999999999999865432 3777766544
No 202
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.86 E-value=3.4e-05 Score=74.84 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=28.5
Q ss_pred eeeeee-eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 206 LLYDVT-GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 206 iL~~vs-~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.|+.+- +-+++|+++.|.||+|+|||||+..++.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 344443 5789999999999999999999988875
No 203
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.83 E-value=1.8e-05 Score=86.16 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=28.0
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
+.+++|+.+.|+||||||||||+++|++...
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999999998653
No 204
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.82 E-value=2.9e-05 Score=78.17 Aligned_cols=46 Identities=22% Similarity=0.015 Sum_probs=37.6
Q ss_pred eeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 208 YDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 208 ~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
+++++. +|++++++|+|||||||++..|++..... .|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccc
Confidence 578887 89999999999999999999999976542 37787766553
No 205
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.78 E-value=7.7e-06 Score=71.12 Aligned_cols=27 Identities=33% Similarity=0.300 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
.|++++|+|+||||||||+++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 477899999999999999999998643
No 206
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.76 E-value=5e-06 Score=86.56 Aligned_cols=42 Identities=36% Similarity=0.439 Sum_probs=35.3
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee-EE-EECCcc
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG-EI-KIGGYP 256 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G-~I-~i~G~~ 256 (404)
.+++|++++|+|+||||||||+++|+|+..+. +| ++ +++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~--~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM--GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT--CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc--CCceEEEECCcH
Confidence 57899999999999999999999999976553 34 67 488865
No 207
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.76 E-value=1.4e-05 Score=68.84 Aligned_cols=29 Identities=31% Similarity=0.698 Sum_probs=23.9
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555665 99999999999999999986
No 208
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.74 E-value=1.4e-05 Score=71.89 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=28.1
Q ss_pred eeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 210 VTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 210 vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+--.+++|++++|+|++|||||||++.|++.+
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34467889999999999999999999999865
No 209
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.74 E-value=5.6e-06 Score=82.04 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=43.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeee--------------eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLY--------------DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+.|+||++.|+. ++..|+ |+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4788888887753 345777 89999999999999999999999999999874
No 210
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.69 E-value=0.00013 Score=66.97 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTT-GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~ 400 (404)
+.|.-.+.. ...+.+-+++++||+-. ++|.......++.+.+....-+++++++--+...+.+.|+.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456555543 33578999999999976 68777665555554443333456666654444445556654
No 211
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.63 E-value=4.9e-05 Score=67.82 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
..+.|.||+|+|||||++.|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999863
No 212
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.59 E-value=6.4e-06 Score=80.63 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=35.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.+.+++++++.+++|.+++|+|++|+|||||++.|++..
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356889999999999999999999999999999998753
No 213
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.59 E-value=7.7e-05 Score=75.50 Aligned_cols=160 Identities=18% Similarity=0.179 Sum_probs=81.9
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhh-cceeEEeecCCCCCCCCCHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETF-ARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~-~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
.-|+.+..-+++|+++.|.|++|+|||||+..++...........+++.... +...+ +|..+....-+. ..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~-~~~~l~~R~~~~~~~i~~--~~----- 259 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM-PAAQLTLRMMCSEARIDM--NR----- 259 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS-CHHHHHHHHHHHHTTCCT--TT-----
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHHHcCCCH--HH-----
Confidence 3577777779999999999999999999998887532110000122222211 11111 111000000000 00
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCC
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTTGL 361 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~--~~p~iLlLDEPtsgL 361 (404)
++. ......+ ...+.+.++.+.-.++ .+-.. .++|..+- .+.++.+. .+|+++++|..+.-.
T Consensus 260 -------l~~-g~l~~~~-~~~~~~a~~~l~~~~l---~i~d~--~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~ 323 (444)
T 2q6t_A 260 -------VRL-GQLTDRD-FSRLVDVASRLSEAPI---YIDDT--PDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMS 323 (444)
T ss_dssp -------CCG-GGCCHHH-HHHHHHHHHHHHTSCE---EEECC--TTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCB
T ss_pred -------HhC-CCCCHHH-HHHHHHHHHHHhcCCE---EEECC--CCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcC
Confidence 000 0111111 1222333333221111 11111 24777664 34556555 479999999987644
Q ss_pred CH----------HHHHHHHHHHHHHHhC-CCeEEEEec
Q 015591 362 DA----------RAAAIIMRAVKNVVDT-GRTIVCTIH 388 (404)
Q Consensus 362 D~----------~~~~~i~~~l~~l~~~-g~tii~~tH 388 (404)
+. .....+.+.|+.++++ +.+||+++|
T Consensus 324 ~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 324 GPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 32 1234677788888764 899999988
No 214
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.51 E-value=0.00014 Score=68.28 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.6
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+.++.-+.|.||+|+|||||++.++..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 456677999999999999999999874
No 215
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.47 E-value=5.4e-05 Score=69.78 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=30.4
Q ss_pred eeeeeeeee---CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 207 LYDVTGSLR---PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 207 L~~vs~~i~---~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
|.++|+++. +|.+++|.|++||||||+++.|+..+.. .+.+.....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~---~~~~~~~~~ 61 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK---DYDVIMTRE 61 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT---TSCEEEECT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc---CCCceeecC
Confidence 556666665 8999999999999999999999986543 145544333
No 216
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.46 E-value=0.00013 Score=63.44 Aligned_cols=27 Identities=41% Similarity=0.701 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999853
No 217
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.45 E-value=6.3e-05 Score=67.96 Aligned_cols=29 Identities=31% Similarity=0.698 Sum_probs=23.7
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344556665 99999999999999999875
No 218
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.44 E-value=0.00037 Score=66.98 Aligned_cols=45 Identities=7% Similarity=0.123 Sum_probs=34.3
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 346 VANPSIIFMDEPTT-GLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 346 ~~~p~iLlLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
..+|++|++||+-. .-+...+..+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35699999999865 2344677888888888777788888888754
No 219
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.43 E-value=0.00011 Score=74.12 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=38.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC----------CCceeeEEEECCccC---chhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKT----------TGSMEGEIKIGGYPK---VQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~----------~~~~~G~I~i~G~~~---~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
-.++|+|+||+|||||+|.|+|... .++..|.+.++|.+. +....++..++.+|....+...+..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3699999999999999999999642 113458999998752 112223333344343333344445555
Q ss_pred HHH
Q 015591 285 VIF 287 (404)
Q Consensus 285 l~~ 287 (404)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 544
No 220
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.42 E-value=1.1e-05 Score=83.83 Aligned_cols=50 Identities=30% Similarity=0.379 Sum_probs=40.7
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
...+++++++.+ +|+.++|+||||+|||||+++|++...+ ..|.|.++|.
T Consensus 95 ~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~--~~~~i~~~~~ 144 (543)
T 3m6a_A 95 EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR--KFVRISLGGV 144 (543)
T ss_dssp HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC--EEEEECCCC-
T ss_pred HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC--CeEEEEeccc
Confidence 345778888888 8999999999999999999999996543 3578877764
No 221
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.42 E-value=6e-05 Score=68.37 Aligned_cols=56 Identities=21% Similarity=0.086 Sum_probs=38.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC-CCceeeEEEE--------CCccCch----hhhcceeEEeecC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKT-TGSMEGEIKI--------GGYPKVQ----ETFARVSGYCEQT 272 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~-~~~~~G~I~i--------~G~~~~~----~~~~~~~g~v~Q~ 272 (404)
+.+++|+|+|||||||+.++|++.+. +....|++.. +|.++.. ..+++.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 56899999999999999999997531 1123477765 5654321 2345567777774
No 222
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.40 E-value=0.00087 Score=61.41 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
.++|+|++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 479999999999999999999644
No 223
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.39 E-value=7.2e-05 Score=65.54 Aligned_cols=38 Identities=34% Similarity=0.375 Sum_probs=29.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee--EEEECCc
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG--EIKIGGY 255 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G--~I~i~G~ 255 (404)
++|++++|+|++||||||+.+.|++.+.+ .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~---~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh---CCCcEEEECCh
Confidence 47999999999999999999999985432 14 5666654
No 224
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.39 E-value=0.00015 Score=63.98 Aligned_cols=50 Identities=30% Similarity=0.389 Sum_probs=28.7
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC------CCCceeeEEEECCc
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK------TTGSMEGEIKIGGY 255 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~------~~~~~~G~I~i~G~ 255 (404)
.+++++++..++. .++++|++|+|||||++.+.+.. +.+...+.+.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4789999998888 57999999999999999998731 22334577777764
No 225
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.36 E-value=8.9e-05 Score=65.49 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=26.3
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999864
No 226
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.36 E-value=0.00084 Score=65.74 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++..-+.|.||+|+|||||++.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45667999999999999999999864
No 227
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.36 E-value=0.0001 Score=66.72 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=30.5
Q ss_pred cCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCe-EEEEecCC
Q 015591 347 ANPSIIFMDEPTTGL-DARAAAIIMRAVKNVVDTGRT-IVCTIHQP 390 (404)
Q Consensus 347 ~~p~iLlLDEPtsgL-D~~~~~~i~~~l~~l~~~g~t-ii~~tH~~ 390 (404)
.+|.+|++||.-.-- +......+.+.+....+.+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 568999999975432 233367788888887666665 78877744
No 228
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.35 E-value=5.8e-05 Score=67.28 Aligned_cols=51 Identities=29% Similarity=0.393 Sum_probs=38.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC------CCCceeeEEEECCc
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK------TTGSMEGEIKIGGY 255 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~------~~~~~~G~I~i~G~ 255 (404)
..+++++|+..++++ ++|+|++|+|||||++.+.+.. +.+...+.+.++|.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 358899999988885 7899999999999999998732 12223467777763
No 229
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.33 E-value=8.8e-05 Score=66.61 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=25.3
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999999998754
No 230
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.28 E-value=4.9e-05 Score=74.59 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=28.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
+++.+++|+|++|||||||+|.|+|...+. .|+|.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~--~~~v~V~~ 109 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER--GHKLSVLA 109 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc--CCeEEEEe
Confidence 457899999999999999999999854322 24454443
No 231
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.27 E-value=0.00025 Score=67.33 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
|...+.|.||+|+|||||.+.|++..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHH
Confidence 34689999999999999999999854
No 232
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.27 E-value=1.7e-05 Score=78.30 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=32.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.+.+.+++..+ +++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 17 ~v~~~~l~~~~-------------~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQV-------------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHH-------------HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHh-------------CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 46667766543 2455788888877 999999999999999998753
No 233
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.26 E-value=0.00068 Score=66.66 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=28.0
Q ss_pred eeeeee--eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 206 LLYDVT--GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 206 iL~~vs--~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
-|+.+- .-+++|+++.|.|++|+|||||...++.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455543 3589999999999999999999988774
No 234
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.23 E-value=5.1e-05 Score=68.56 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=33.6
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee--EEEECCc
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG--EIKIGGY 255 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G--~I~i~G~ 255 (404)
..+++|.+++|+|++||||||+.+.|++.+.+ ..| .+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~--~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVR--DRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHH--HHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--ccCCcEEEECCh
Confidence 44678999999999999999999999986542 236 7777753
No 235
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.18 E-value=0.00046 Score=67.09 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 236
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.15 E-value=0.00016 Score=64.54 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 237
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.14 E-value=0.00051 Score=58.91 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 238
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.10 E-value=0.00044 Score=63.52 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=39.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec---------CCCHHHHHhcccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH---------QPSIDIFEAFDEVKQ 403 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH---------~~~~~i~~~fd~~l~ 403 (404)
+|+++++||.-. |+.. +.+.++.+++.|.+||++-| ..+.++.+++|+|..
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~e 148 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITK 148 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEE
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEee
Confidence 489999999964 6543 45566676667999999999 667788999998753
No 239
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.09 E-value=0.0013 Score=60.64 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=21.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++..-+.|.||+|+|||||++.++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456889999999999999999863
No 240
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.09 E-value=0.0047 Score=59.54 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=23.8
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
..+..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566779999999999999999999743
No 241
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.08 E-value=7.1e-05 Score=73.48 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=33.2
Q ss_pred eeeeeeeeeeeCCcE--EEEEcCCCCcHHHHHHHHhCC
Q 015591 205 RLLYDVTGSLRPGVL--TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~--~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+++.+++.+++|+. ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 478899999999999 999999999999999999984
No 242
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.08 E-value=0.00028 Score=69.55 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=26.8
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
+++..+++.+| +++|+|+|||||||++..|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45677777776 99999999999999999875
No 243
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=8e-05 Score=72.32 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=35.4
Q ss_pred CceeeeeeeeeeeeCCcE--EEEEcCCCCcHHHHHHHHhCCC
Q 015591 202 KKLRLLYDVTGSLRPGVL--TALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~--~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+...+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345688899999999998 9999999999999999999854
No 244
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.04 E-value=0.0003 Score=61.91 Aligned_cols=30 Identities=33% Similarity=0.524 Sum_probs=25.9
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
...+|.++.|+|++||||||+.+.|++...
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999999997543
No 245
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.99 E-value=0.00066 Score=59.03 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 246
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.99 E-value=0.00015 Score=67.58 Aligned_cols=46 Identities=28% Similarity=0.258 Sum_probs=34.6
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
++++.+ ..+++.++.|+|++||||||+.+.|+..... +.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecHH
Confidence 344444 5677899999999999999999999975432 456777643
No 247
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.98 E-value=0.00033 Score=61.31 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999984
No 248
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.98 E-value=0.00028 Score=63.00 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 249
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.95 E-value=0.00041 Score=61.25 Aligned_cols=38 Identities=39% Similarity=0.338 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC-CCceeeEEEECCc
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKT-TGSMEGEIKIGGY 255 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~-~~~~~G~I~i~G~ 255 (404)
.+++|+|+||||||||++.|.+... .+..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5899999999999999999987532 1222377777654
No 250
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.92 E-value=0.00048 Score=59.79 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
|.++.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999754
No 251
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.87 E-value=0.00051 Score=59.03 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 252
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.84 E-value=0.00014 Score=69.83 Aligned_cols=46 Identities=26% Similarity=0.161 Sum_probs=36.1
Q ss_pred ee-eeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 208 YD-VTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 208 ~~-vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
++ +++..+ |++++++|++|+||||++..|++..... .++|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecC
Confidence 46 788876 9999999999999999999999865432 3667665544
No 253
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.83 E-value=0.00052 Score=62.97 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.7
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
-.+|.+++|+|++||||||+.+.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999996
No 254
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.77 E-value=0.00071 Score=67.39 Aligned_cols=44 Identities=20% Similarity=0.448 Sum_probs=32.4
Q ss_pred eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC---------CCCceeeEEEECC
Q 015591 211 TGSLRPGVLTALMGVSGAGKTTLLDVLAGRK---------TTGSMEGEIKIGG 254 (404)
Q Consensus 211 s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~---------~~~~~~G~I~i~G 254 (404)
-..+..|..++|+|+||+|||||++.|+|.. +..+..|.+.+.+
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3456778899999999999999999999961 1123457777665
No 255
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.77 E-value=0.00044 Score=64.06 Aligned_cols=45 Identities=27% Similarity=0.444 Sum_probs=29.8
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
.++++++..++| +.|.||+|+|||||++.|++.... --+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~----~~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV----PFFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTC----CEEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCC----CEEEEeHHH
Confidence 355566666666 889999999999999999985432 136666654
No 256
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.76 E-value=0.00071 Score=59.37 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+++.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999985
No 257
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.76 E-value=0.00074 Score=59.01 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
|.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999863
No 258
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.74 E-value=0.00069 Score=59.21 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999985
No 259
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.70 E-value=0.00077 Score=62.35 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.-+++|.||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999994
No 260
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.64 E-value=0.001 Score=58.12 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999853
No 261
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.61 E-value=0.00077 Score=58.80 Aligned_cols=25 Identities=40% Similarity=0.294 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.++..+.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999984
No 262
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.60 E-value=0.0011 Score=59.69 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 263
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.59 E-value=0.0011 Score=56.68 Aligned_cols=19 Identities=26% Similarity=0.646 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 015591 219 LTALMGVSGAGKTTLLDVL 237 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L 237 (404)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 264
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.56 E-value=0.0013 Score=58.32 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999754
No 265
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.55 E-value=0.0061 Score=60.04 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=24.9
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+-+++|+++.|.|++|+|||||...++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999977763
No 266
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.54 E-value=0.0011 Score=61.66 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+++|+||||||||||.+.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 36899999999999999999974
No 267
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.53 E-value=0.0012 Score=58.26 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999973
No 268
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.51 E-value=0.0056 Score=59.82 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++..-+.|.||+|+|||||.+.++..
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHH
Confidence 45556889999999999999999963
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.51 E-value=0.0012 Score=58.91 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.+.|+||||||||||++.|..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998864
No 270
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.50 E-value=0.014 Score=57.42 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++.-+.|.||+|+|||||.+.|+..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999999864
No 271
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.50 E-value=0.0014 Score=58.14 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999998643
No 272
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.49 E-value=0.0014 Score=58.35 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
++|.+++|.|++||||||+.+.|+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 273
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.49 E-value=0.0044 Score=62.60 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=30.0
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.-|+.+..-+++|+++.|.|++|+|||||+.-++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 35677776799999999999999999999877764
No 274
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.46 E-value=0.0014 Score=57.49 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.++.+++|+|++||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999985
No 275
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.45 E-value=0.0016 Score=57.57 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999964
No 276
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.44 E-value=0.009 Score=57.34 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+..-+.|.||+|+|||||.+.++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999999863
No 277
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.43 E-value=0.0016 Score=58.01 Aligned_cols=25 Identities=44% Similarity=0.525 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
++|.+++|.|++||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999999985
No 278
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.43 E-value=0.00078 Score=60.21 Aligned_cols=23 Identities=52% Similarity=0.765 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 279
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.42 E-value=0.019 Score=58.63 Aligned_cols=35 Identities=23% Similarity=0.093 Sum_probs=29.2
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+-|+.+..-+++|+++.|.|++|+|||||+.-++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34666666699999999999999999999877663
No 280
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.41 E-value=0.0094 Score=50.11 Aligned_cols=41 Identities=2% Similarity=0.071 Sum_probs=29.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 349 PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 349 p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
..+|++||.- .|+...+..+.+.+.+..+.+..+|++|+.+
T Consensus 76 ~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 76 GGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 4678999964 6788888888888876533456677777654
No 281
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.40 E-value=0.0017 Score=56.10 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
No 282
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.38 E-value=0.0016 Score=56.57 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 283
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.37 E-value=0.00075 Score=59.52 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.7
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++++.+++|.|++||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456779999999999999999999853
No 284
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.35 E-value=0.0016 Score=61.99 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=27.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
..|.++.|.|||||||||+.+.|+..... |.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~----~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG----NVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTT----CCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEec
Confidence 45789999999999999999999864321 4566664
No 285
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.30 E-value=0.0038 Score=63.14 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeC-CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDE-PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDE-PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.|++....+...+.+++++|+.. .+.++.... ..+.+.++ +.++.+|++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D 142 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLD 142 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC-
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECcc
Confidence 36666677777888888754443 445666554 34455443 35788888877554
No 286
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.29 E-value=0.0022 Score=56.07 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999975
No 287
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.27 E-value=0.0021 Score=56.13 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++.|.|++||||||+.+.|+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 288
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.25 E-value=0.0052 Score=62.90 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++..-+.|.||+|+|||+|.+.|+..
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 455667999999999999999999864
No 289
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.23 E-value=0.01 Score=68.79 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=25.4
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
-+++|+++.|.||+|+|||||+..++.
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~ 754 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIA 754 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHH
Confidence 599999999999999999999998875
No 290
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.21 E-value=0.002 Score=60.30 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccc
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~ 401 (404)
|||+++......+.+.+.++.+. ..+..+..|..+ ++.+.++++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~-~~e~~~~~l 188 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDE-DIEREIKHI 188 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCH-HHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCH-HHHHHHHHH
Confidence 99999999999999988887654 444455566543 566655554
No 291
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.19 E-value=0.0027 Score=57.25 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|..+.|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999853
No 292
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.14 E-value=0.0028 Score=55.61 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+++|+|++|||||||+..|++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999998874
No 293
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.10 E-value=0.0019 Score=63.88 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=38.0
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 348 NPSIIFMDEPTTGLD---ARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD---~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.|.++++||.=.-++ +.....+.+.+++.++.|..++++||.|+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 578999999988884 66777888888888878999999999997
No 294
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.08 E-value=0.0047 Score=59.51 Aligned_cols=37 Identities=30% Similarity=0.244 Sum_probs=31.9
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
....+++..+.+ .|.-++|+|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 356788888887 7999999999999999999988863
No 295
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.07 E-value=0.0021 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=17.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999853
No 296
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.07 E-value=0.0031 Score=55.34 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 297
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.06 E-value=0.0031 Score=57.21 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.++.+++|.|++||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999985
No 298
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.02 E-value=0.0034 Score=55.63 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999874
No 299
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.02 E-value=0.0031 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999999843
No 300
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.00 E-value=0.0038 Score=55.37 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.+.+++|+|+.||||||+.+.|+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
No 301
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.003 Score=55.12 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999753
No 302
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.95 E-value=0.0038 Score=53.18 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999999984
No 303
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0038 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999873
No 304
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.93 E-value=0.0033 Score=56.76 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.+..+.|+|++||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999985
No 305
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.93 E-value=0.005 Score=60.56 Aligned_cols=38 Identities=24% Similarity=0.436 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC---------CCCceeeEEEECC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK---------TTGSMEGEIKIGG 254 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~---------~~~~~~G~I~i~G 254 (404)
|..++|+|.+|+|||||++.|++.. +.++..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 3468999999999999999999832 2223457776655
No 306
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.93 E-value=0.0041 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
++++|.|+.||||||+.+.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999985
No 307
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.91 E-value=0.0033 Score=53.09 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 308
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.89 E-value=0.0042 Score=54.23 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999853
No 309
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.89 E-value=0.0044 Score=54.92 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
..+++|.|++||||||+.+.|+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 310
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.89 E-value=0.0041 Score=55.67 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 311
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.89 E-value=0.0037 Score=54.32 Aligned_cols=22 Identities=50% Similarity=0.659 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 312
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.88 E-value=0.004 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999984
No 313
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.88 E-value=0.0036 Score=53.79 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
.+++|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999985
No 314
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.88 E-value=0.0043 Score=52.60 Aligned_cols=21 Identities=43% Similarity=0.669 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+|++|+|||||++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999864
No 315
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.85 E-value=0.0034 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
No 316
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.84 E-value=0.0046 Score=53.83 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
..+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
No 317
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.84 E-value=0.0037 Score=54.51 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
.+++|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 318
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.82 E-value=0.0042 Score=54.18 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 319
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.82 E-value=0.0046 Score=58.30 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.|+|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999995
No 320
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.82 E-value=0.0049 Score=57.40 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999853
No 321
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.81 E-value=0.0038 Score=52.46 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|+.|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999864
No 322
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.81 E-value=0.0049 Score=52.74 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
No 323
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.80 E-value=0.0038 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 324
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.80 E-value=0.0077 Score=58.60 Aligned_cols=26 Identities=38% Similarity=0.436 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
++.++.|+||+|||||||...|+...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46689999999999999999999754
No 325
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.80 E-value=0.0039 Score=52.36 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998863
No 326
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.79 E-value=0.0058 Score=52.22 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999873
No 327
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.79 E-value=0.0045 Score=57.27 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|.+|+|||||++.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999853
No 328
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.79 E-value=0.0078 Score=52.50 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999976654
No 329
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.78 E-value=0.0044 Score=53.72 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999853
No 330
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.77 E-value=0.015 Score=52.84 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec---------CCCHHHHHhccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH---------QPSIDIFEAFDEVK 402 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH---------~~~~~i~~~fd~~l 402 (404)
+.+++++||.-- +|.. . ++.++++++.|..||++-+ .++.++.+++|.|-
T Consensus 101 ~~dvViIDEaQF-~~~~---~-V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vt 159 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD---I-VEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVT 159 (214)
T ss_dssp SCCEEEECCGGG-SCTT---H-HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEE
T ss_pred CCCEEEEECccc-CCHH---H-HHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEE
Confidence 578999999865 6643 2 3667777777999999999 78888999999874
No 331
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.76 E-value=0.005 Score=55.18 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 332
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.74 E-value=0.035 Score=51.01 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=40.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC---------CCHHHHHhccccc
Q 015591 347 ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ---------PSIDIFEAFDEVK 402 (404)
Q Consensus 347 ~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~---------~~~~i~~~fd~~l 402 (404)
.+.+++++||.---.| +.+.++.+.+.|+.||++-++ ++.++.+++|.|-
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vt 147 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVV 147 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEE
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEE
Confidence 6789999999977654 555555555679999999999 8888999999774
No 333
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.74 E-value=0.0042 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-++++|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
No 334
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.73 E-value=0.0043 Score=52.56 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 335
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.73 E-value=0.0041 Score=52.57 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
No 336
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.73 E-value=0.0056 Score=56.45 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+++-.++|.|++||||||+.+.|+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 337
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.72 E-value=0.0044 Score=52.30 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 338
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.71 E-value=0.0044 Score=52.20 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999863
No 339
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.71 E-value=0.005 Score=53.26 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+|++|+|||||++.+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999984
No 340
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.69 E-value=0.097 Score=52.71 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++.+++++|++|+||||++.-|+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4679999999999999999999863
No 341
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.69 E-value=0.0045 Score=52.97 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998874
No 342
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.68 E-value=0.0039 Score=53.65 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999985
No 343
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.68 E-value=0.0045 Score=52.86 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
No 344
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.65 E-value=0.0045 Score=52.90 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 345
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.64 E-value=0.0058 Score=56.50 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
-+++|.|++||||||+.+.|+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 346
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.64 E-value=0.0061 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
..+++|+|+.||||||+.+.|+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
No 347
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.64 E-value=0.0051 Score=57.66 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||+|.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999998874
No 348
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.62 E-value=0.019 Score=62.61 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
..+.|.||+|+|||+|.+.|+...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999743
No 349
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.57 E-value=0.0053 Score=51.75 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 379999999999999999986
No 350
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.56 E-value=0.0062 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 351
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.54 E-value=0.0054 Score=52.87 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|++|+|||||++.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
No 352
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.53 E-value=0.0055 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|+.|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999975
No 353
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.52 E-value=0.0057 Score=52.85 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 354
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.51 E-value=0.0058 Score=51.75 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++++|++|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
No 355
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.50 E-value=0.0057 Score=53.34 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999874
No 356
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.50 E-value=0.01 Score=53.50 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=27.3
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++..-.. ..|..+.|+||+|+|||||...|+.+
T Consensus 24 ~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45554444 45889999999999999999999864
No 357
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.49 E-value=0.0033 Score=59.86 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=18.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
++-+++|.|++||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 355899999999999999999985
No 358
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.48 E-value=0.0068 Score=54.63 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+|..+.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999853
No 359
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.47 E-value=0.0061 Score=51.31 Aligned_cols=20 Identities=40% Similarity=0.512 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|++|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999976
No 360
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.47 E-value=0.0074 Score=57.70 Aligned_cols=25 Identities=40% Similarity=0.654 Sum_probs=21.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+.| .++|+|.+|+|||||++.|.|.
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTS
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCC
Confidence 344 5999999999999999999985
No 361
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.46 E-value=0.0068 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-++|+|++|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 37899999999999999999854
No 362
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.46 E-value=0.0063 Score=53.73 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++|+|++|+|||||++.+.|
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999976
No 363
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.46 E-value=0.0059 Score=52.05 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|+.|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999986
No 364
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.43 E-value=0.0064 Score=52.06 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 365
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.43 E-value=0.0071 Score=57.12 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 366
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.42 E-value=0.0076 Score=56.14 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|.+|||||||++.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999995
No 367
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.42 E-value=0.0064 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
No 368
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.41 E-value=0.0089 Score=51.30 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=22.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
..+..+.|.||+|+|||||++.++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999864
No 369
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.40 E-value=0.0065 Score=52.74 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.|.+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 370
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.40 E-value=0.0066 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|+.|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 371
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.39 E-value=0.0082 Score=51.91 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.-.++++|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999743
No 372
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.38 E-value=0.0024 Score=56.98 Aligned_cols=43 Identities=9% Similarity=0.222 Sum_probs=30.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 347 ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 347 ~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.+|.+|++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7877777776666542 23567888888764
No 373
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.37 E-value=0.0075 Score=55.71 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.|.|.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 374
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.35 E-value=0.0085 Score=54.34 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 375
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.34 E-value=0.0085 Score=57.32 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|.+|+|||||++.|.|.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999995
No 376
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.33 E-value=0.0099 Score=53.93 Aligned_cols=26 Identities=46% Similarity=0.615 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-+|.++++.|++||||||+++.|+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999764
No 377
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.32 E-value=0.0072 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|+.|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 378
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.32 E-value=0.0049 Score=55.09 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 379
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.29 E-value=0.009 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.287 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 380
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.29 E-value=0.0071 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 381
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.28 E-value=0.0074 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
No 382
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.27 E-value=0.0089 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999974
No 383
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.27 E-value=0.0075 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999863
No 384
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.27 E-value=0.048 Score=64.21 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=28.0
Q ss_pred eeeeee--eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 206 LLYDVT--GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 206 iL~~vs--~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
-|+.+- .-+++|+++.|.||+|+|||||+..++.
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 455554 3599999999999999999999887764
No 385
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.24 E-value=0.007 Score=59.65 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999974
No 386
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.24 E-value=0.0095 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999874
No 387
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.24 E-value=0.0079 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998843
No 388
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.23 E-value=0.0078 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 389
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.23 E-value=0.008 Score=52.27 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999874
No 390
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.23 E-value=0.0075 Score=52.58 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 489999999999999999987
No 391
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.22 E-value=0.008 Score=52.27 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999874
No 392
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.22 E-value=0.0096 Score=53.40 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999985
No 393
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.21 E-value=0.011 Score=53.80 Aligned_cols=25 Identities=44% Similarity=0.541 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+..+.|+|+.||||||+.+.|+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999853
No 394
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.20 E-value=0.0078 Score=52.16 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999874
No 395
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.19 E-value=0.008 Score=55.20 Aligned_cols=28 Identities=36% Similarity=0.570 Sum_probs=21.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
..+|.++.+.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999998643
No 396
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.19 E-value=0.0084 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 397
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.18 E-value=0.0092 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999999853
No 398
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.18 E-value=0.0097 Score=55.45 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.|+|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999984
No 399
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.17 E-value=0.008 Score=52.56 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|+.|+|||||++.+.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999874
No 400
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.16 E-value=0.0086 Score=53.52 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999999863
No 401
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.16 E-value=0.0087 Score=51.40 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999985
No 402
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.16 E-value=0.01 Score=53.59 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 403
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.16 E-value=0.01 Score=56.00 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 404
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.16 E-value=0.01 Score=51.73 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999984
No 405
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.15 E-value=0.011 Score=54.46 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+|.++++.|++||||||+++.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998643
No 406
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.14 E-value=0.01 Score=55.68 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|.+|||||||++.|.|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 407
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.01 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999963
No 408
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.13 E-value=0.018 Score=51.10 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999999743
No 409
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.13 E-value=0.01 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 410
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.12 E-value=0.011 Score=59.12 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
-.+.+++.|+|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999985
No 411
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.10 E-value=0.0087 Score=52.73 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999999974
No 412
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.08 E-value=0.0096 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 413
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.08 E-value=0.0093 Score=52.45 Aligned_cols=21 Identities=43% Similarity=0.776 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 414
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.08 E-value=0.0093 Score=51.83 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999999986
No 415
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.07 E-value=0.011 Score=53.93 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++..++.|+||.||||+|..+.|+..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 355678999999999999999999853
No 416
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.04 E-value=0.0093 Score=52.00 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3799999999999999999974
No 417
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.04 E-value=0.011 Score=57.44 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.+++|+||+|||||||.+.|+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999743
No 418
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.02 E-value=0.011 Score=55.99 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|+.|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999964
No 419
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.02 E-value=0.0099 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 420
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.01 E-value=0.013 Score=56.40 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999998644
No 421
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.01 E-value=0.013 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+|.++.+-|++||||||+++.|+..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998643
No 422
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.00 E-value=0.0096 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 423
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.98 E-value=0.012 Score=50.55 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 488999999999999999984
No 424
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.98 E-value=0.014 Score=53.21 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
++|.++.+-|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999987543
No 425
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.97 E-value=0.014 Score=55.86 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=28.1
Q ss_pred eeeeee-eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 206 LLYDVT-GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 206 iL~~vs-~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5789999999999999999999988774
No 426
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.01 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|+.|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 427
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.0099 Score=52.87 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999998875
No 428
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.96 E-value=0.011 Score=52.83 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+.+++|+|++||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
No 429
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.96 E-value=0.011 Score=51.58 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|+.|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 430
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.96 E-value=0.011 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 431
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.95 E-value=0.011 Score=50.68 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3557889999999999999999864
No 432
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.95 E-value=0.014 Score=53.40 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+|.+++|-|+.||||||+.+.|+...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998644
No 433
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.94 E-value=0.015 Score=53.22 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+|.++++.|++||||||+.+.|+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 434
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.94 E-value=0.013 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 435
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.93 E-value=0.011 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 436
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.92 E-value=0.011 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 437
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.91 E-value=0.074 Score=61.77 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=28.2
Q ss_pred eeeeee--eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 206 LLYDVT--GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 206 iL~~vs--~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 466654 3589999999999999999999877764
No 438
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.90 E-value=0.011 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|+.|+|||||++.+.+.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 439
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.89 E-value=0.0099 Score=55.20 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+++.+++|.|+.||||||+.+.|+...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999998754
No 440
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.89 E-value=0.013 Score=52.34 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999873
No 441
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.88 E-value=0.013 Score=51.39 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-.++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
No 442
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.86 E-value=0.018 Score=52.23 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=31.5
Q ss_pred hcCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCC
Q 015591 346 VANPSIIFMDEPTT----GLDARAAAIIMRAVKNVVDT-GRTIVCTIHQP 390 (404)
Q Consensus 346 ~~~p~iLlLDEPts----gLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~ 390 (404)
-.+|+++++|--+. .-|.....+++..|++++++ |.++++++|..
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 45789999995432 12445556677778877754 99999999864
No 443
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.86 E-value=0.0082 Score=55.11 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=28.0
Q ss_pred HHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q 015591 344 ELVANPSIIFMDEPTT-GLDARAAAIIMRAVKNVVDTGRTIVCTIH 388 (404)
Q Consensus 344 aL~~~p~iLlLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~tH 388 (404)
++..+|+++++||+-. ..+........+.+..+.+.|..++.++|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3446899999999753 23322222233333444457889999998
No 444
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.85 E-value=0.012 Score=55.13 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 445
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.85 E-value=0.011 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 446
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.82 E-value=0.0049 Score=59.25 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=30.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
+++++++|| ...|++..+..+.+.+.+.. ....+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS-GVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC-CCceEEEEeCchh
Confidence 567999999 67888888888888887653 3445666776654
No 447
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.81 E-value=0.013 Score=54.36 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
No 448
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.79 E-value=0.015 Score=56.31 Aligned_cols=24 Identities=42% Similarity=0.385 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++.|+||+|||||||.+.|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999743
No 449
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.78 E-value=0.0094 Score=51.04 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999863
No 450
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.78 E-value=0.016 Score=58.77 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=28.7
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++.+ ..+-+|+..+|+|++|+|||||++.|+..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 55555 56678999999999999999999998763
No 451
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.76 E-value=0.012 Score=52.40 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 452
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.76 E-value=0.014 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999843
No 453
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.76 E-value=0.0091 Score=51.37 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=9.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 454
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.72 E-value=0.013 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999888763
No 455
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.72 E-value=0.013 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 456
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.65 E-value=0.013 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999873
No 457
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.65 E-value=0.15 Score=60.17 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=31.4
Q ss_pred eeeeeeee--eeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 204 LRLLYDVT--GSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 204 ~~iL~~vs--~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
.+.|+++. +.+++|+.+.|.||+|+|||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45788888 589999999999999999999998876
No 458
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.61 E-value=0.013 Score=50.86 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++++|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999976
No 459
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.60 E-value=0.0085 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 460
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.54 E-value=0.018 Score=51.84 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999873
No 461
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.53 E-value=0.037 Score=48.72 Aligned_cols=33 Identities=15% Similarity=-0.022 Sum_probs=25.6
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.++..-.. ..|.-+.|.|+||+|||||...|..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44444444 4588999999999999999987764
No 462
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.53 E-value=0.021 Score=54.91 Aligned_cols=24 Identities=33% Similarity=0.261 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
..+++|+||+|||||||...|+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 457999999999999999999864
No 463
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.51 E-value=0.015 Score=50.61 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 464
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.50 E-value=0.076 Score=56.99 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+.|.||+|+|||+|.+.|+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 465
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.49 E-value=0.019 Score=51.36 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-.++|+|.+|+|||||++-++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999988863
No 466
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.44 E-value=0.0065 Score=56.28 Aligned_cols=31 Identities=32% Similarity=0.551 Sum_probs=24.2
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+.++....+.| +.|.||+|+|||||++.|+.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHH
Confidence 33444455555 77999999999999999987
No 467
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.43 E-value=0.007 Score=65.70 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=28.6
Q ss_pred eeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 210 VTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 210 vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++.+.+|+.+.|.||+|+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 46677899999999999999999999999854
No 468
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.41 E-value=0.021 Score=53.42 Aligned_cols=25 Identities=28% Similarity=0.648 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
..++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4799999999999999999998643
No 469
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.26 E-value=0.024 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++.|+||.||||+|..+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999963
No 470
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.26 E-value=0.018 Score=50.79 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|+.|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
No 471
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.26 E-value=0.0091 Score=52.36 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=4.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 472
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.02 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 473
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.19 E-value=0.058 Score=54.97 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHH--Hhc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 015591 330 GLSTEQRKRLTIAVE--LVA---------------NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ 389 (404)
Q Consensus 330 ~LSgGqrqRl~IAra--L~~---------------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~ 389 (404)
++||||+|-.-+|++ ++. .-.+++|||+ +-+|.+.....+++++++ |.-+|+++-.
T Consensus 379 ~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~ 451 (483)
T 3euj_A 379 ALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE 451 (483)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS
T ss_pred CCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc
Confidence 699999996544443 222 1236999999 999999999999999864 7777777754
No 474
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.18 E-value=0.025 Score=56.33 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+++|+||+|||||||...|+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 47899999999999999999864
No 475
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.11 E-value=0.021 Score=50.58 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++++|++|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999988875
No 476
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.06 E-value=0.031 Score=49.25 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=35.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC---------HHHHHhccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS---------IDIFEAFDEVK 402 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~---------~~i~~~fd~~l 402 (404)
+++++++||.-- +|+ .+.+.|+++++.|..|+++.++.+ ..+.+.+|.+.
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~ 134 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVI 134 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEE
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheE
Confidence 578999999743 543 356677777777999999998443 55777777653
No 477
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.01 E-value=0.023 Score=50.78 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998863
No 478
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.00 E-value=0.022 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.284 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 479
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.99 E-value=0.028 Score=47.20 Aligned_cols=42 Identities=5% Similarity=0.045 Sum_probs=29.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
+..+|++||. ..|++..+..+.+.|... ..+..+|++|+.+-
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 3457899998 468888888888887432 23456777777653
No 480
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.91 E-value=0.032 Score=52.54 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++..+.|.||+|+|||||.+.++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45667999999999999999988863
No 481
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.75 E-value=0.033 Score=48.85 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=26.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
++.+|++||. ..++......+.+.+.+.. .+..+|++++.+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence 5778999985 4466666666666666532 345667777655
No 482
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.70 E-value=0.039 Score=53.35 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=27.6
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
|+.+-+-+++|.++.|.||+|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 444336789999999999999999999999874
No 483
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.64 E-value=0.044 Score=49.10 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=48.0
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 336 RKRLTIAVELV--ANPSIIFMDEPTTG--LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 336 rqRl~IAraL~--~~p~iLlLDEPtsg--LD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
++.+.-|+..+ .+.+++||||.+.. ++......+++.|.+- .....||+|.+.+..++.+..|.|
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr~ap~~l~e~AD~V 174 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGCHRDILDLADTV 174 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSCCHHHHHHCSEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECCCCcHHHHHhCcce
Confidence 44555666677 55789999999763 3334445677777642 257899999999999999999965
No 484
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.55 E-value=0.042 Score=51.88 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 4468999999999999999999854
No 485
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.39 E-value=0.041 Score=52.47 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998764
No 486
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.36 E-value=0.036 Score=56.86 Aligned_cols=28 Identities=14% Similarity=0.038 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
+.|.++.|+|.+||||||+-+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999997543
No 487
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.33 E-value=0.048 Score=48.97 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
|..+++=|+-||||||+++.|+..+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999998754
No 488
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.32 E-value=0.041 Score=51.07 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=22.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++...+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34557889999999999999999863
No 489
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.31 E-value=0.022 Score=57.36 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.+++++|++|+||||+...|++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999753
No 490
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.39 E-value=0.015 Score=51.17 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++++|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988876
No 491
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.22 E-value=0.032 Score=54.27 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999954
No 492
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.22 E-value=0.042 Score=53.64 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHH---hc--CCCEEEEeCCC
Q 015591 330 GLSTEQRKRLTIAVEL---VA--NPSIIFMDEPT 358 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL---~~--~p~iLlLDEPt 358 (404)
.+|+||+||..|+++| +. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 77 89999999997
No 493
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.22 E-value=0.048 Score=51.58 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=21.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++-..+.|.||+|+|||+|.+.|+..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33456788899999999999999963
No 494
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.18 E-value=0.051 Score=51.90 Aligned_cols=53 Identities=9% Similarity=0.106 Sum_probs=31.3
Q ss_pred hcCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCCHHHHHhc
Q 015591 346 VANPSIIFMDEPT-TGLDARAAAIIMR-AVKNVVDTGRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 346 ~~~p~iLlLDEPt-sgLD~~~~~~i~~-~l~~l~~~g~tii~~tH~~~~~i~~~f 398 (404)
+.++++|++||.- ..++...+..++. ++......++.+|++|+.+..++...+
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~ 266 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKW 266 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTC
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 4578999999982 2344433443444 555543346788888887766666654
No 495
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.17 E-value=0.039 Score=55.28 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|.+|+|||||++.|.|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 496
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.15 E-value=0.046 Score=50.22 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
..+||+|+.||||||+.+.|+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 497
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.15 E-value=0.049 Score=52.59 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.+|..+.|.||+|+|||||++.++...
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999999743
No 498
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.14 E-value=0.0099 Score=52.28 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
No 499
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=93.13 E-value=0.071 Score=52.55 Aligned_cols=38 Identities=29% Similarity=0.486 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC---------CCceeeEEEECCcc
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKT---------TGSMEGEIKIGGYP 256 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~---------~~~~~G~I~i~G~~ 256 (404)
-+||+|..-+|||||+|.|+|... ..+..|.+.++|..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~ 120 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK 120 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence 589999999999999999999421 12345888887753
No 500
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.13 E-value=0.051 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
..-+++|+|+.|+|||||++.|++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999975
Done!