Query 015595
Match_columns 404
No_of_seqs 178 out of 2143
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 07:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 1.4E-69 3E-74 438.8 29.7 396 9-404 3-400 (400)
2 KOG0330 ATP-dependent RNA heli 100.0 5E-64 1.1E-68 423.8 31.8 371 28-399 56-429 (476)
3 KOG0331 ATP-dependent RNA heli 100.0 1.3E-62 2.9E-67 442.0 33.3 368 34-402 92-473 (519)
4 PRK04837 ATP-dependent RNA hel 100.0 8.8E-61 1.9E-65 445.0 40.5 371 31-402 6-387 (423)
5 PTZ00110 helicase; Provisional 100.0 1E-60 2.2E-65 453.1 40.8 377 26-403 123-510 (545)
6 PRK10590 ATP-dependent RNA hel 100.0 1.4E-59 3.1E-64 439.4 40.7 362 34-396 2-371 (456)
7 PRK11776 ATP-dependent RNA hel 100.0 2.3E-59 5E-64 440.1 41.6 362 33-396 4-368 (460)
8 PLN00206 DEAD-box ATP-dependen 100.0 2.1E-59 4.6E-64 443.1 41.0 374 27-402 115-500 (518)
9 COG0513 SrmB Superfamily II DN 100.0 3.4E-59 7.5E-64 438.3 41.6 362 33-394 29-398 (513)
10 PRK11634 ATP-dependent RNA hel 100.0 2.8E-59 6E-64 446.7 40.5 367 32-399 5-374 (629)
11 PRK04537 ATP-dependent RNA hel 100.0 3.2E-59 7E-64 444.1 40.7 364 33-397 9-384 (572)
12 PRK11192 ATP-dependent RNA hel 100.0 3E-58 6.4E-63 430.2 42.6 362 34-395 2-370 (434)
13 PTZ00424 helicase 45; Provisio 100.0 2.6E-58 5.6E-63 428.0 41.5 372 31-402 26-399 (401)
14 PRK01297 ATP-dependent RNA hel 100.0 3.2E-57 7E-62 426.5 42.7 368 30-398 84-464 (475)
15 KOG0326 ATP-dependent RNA heli 100.0 1.9E-58 4.2E-63 380.3 20.6 370 31-402 83-454 (459)
16 KOG0333 U5 snRNP-like RNA heli 100.0 1.9E-56 4.2E-61 391.1 33.7 374 26-400 238-648 (673)
17 KOG0342 ATP-dependent RNA heli 100.0 2.5E-56 5.3E-61 388.3 31.8 355 31-386 80-446 (543)
18 KOG0343 RNA Helicase [RNA proc 100.0 1.2E-56 2.6E-61 394.6 29.7 358 29-388 65-434 (758)
19 KOG0340 ATP-dependent RNA heli 100.0 3.3E-56 7.2E-61 372.1 29.7 367 31-398 5-382 (442)
20 KOG0345 ATP-dependent RNA heli 100.0 1.2E-55 2.5E-60 381.7 32.7 351 34-385 5-372 (567)
21 KOG0338 ATP-dependent RNA heli 100.0 2.8E-56 6.1E-61 388.8 25.1 357 32-388 180-544 (691)
22 KOG0336 ATP-dependent RNA heli 100.0 1.3E-54 2.9E-59 369.0 26.6 380 19-400 205-595 (629)
23 KOG0335 ATP-dependent RNA heli 100.0 6.7E-54 1.4E-58 379.2 29.2 376 26-402 67-469 (482)
24 KOG0339 ATP-dependent RNA heli 100.0 1.1E-52 2.3E-57 366.3 30.8 379 25-403 215-601 (731)
25 KOG0346 RNA helicase [RNA proc 100.0 4.8E-53 1E-57 362.5 27.6 358 33-391 19-424 (569)
26 KOG0327 Translation initiation 100.0 9.2E-53 2E-57 356.3 25.9 377 25-404 18-397 (397)
27 KOG0332 ATP-dependent RNA heli 100.0 1.7E-52 3.6E-57 352.1 26.6 367 29-398 86-465 (477)
28 KOG0348 ATP-dependent RNA heli 100.0 6.7E-52 1.5E-56 363.5 28.3 367 22-389 125-566 (708)
29 TIGR03817 DECH_helic helicase/ 100.0 2E-50 4.3E-55 393.3 38.0 348 40-396 21-407 (742)
30 KOG0341 DEAD-box protein abstr 100.0 1.3E-52 2.8E-57 354.6 17.5 378 24-403 161-555 (610)
31 KOG0347 RNA helicase [RNA proc 100.0 9.1E-50 2E-54 351.2 21.9 365 27-393 175-586 (731)
32 KOG0334 RNA helicase [RNA proc 100.0 4.4E-49 9.5E-54 372.7 27.7 380 21-400 353-743 (997)
33 PLN03137 ATP-dependent DNA hel 100.0 1.8E-47 3.9E-52 370.7 37.9 336 37-386 441-796 (1195)
34 TIGR00614 recQ_fam ATP-depende 100.0 3E-47 6.5E-52 357.3 35.7 320 51-386 7-342 (470)
35 KOG4284 DEAD box protein [Tran 100.0 1.1E-47 2.5E-52 343.7 24.9 359 32-391 24-398 (980)
36 PRK11057 ATP-dependent DNA hel 100.0 5.5E-46 1.2E-50 357.4 37.3 328 41-385 10-351 (607)
37 PRK02362 ski2-like helicase; P 100.0 9.9E-46 2.1E-50 364.6 33.9 334 34-378 2-398 (737)
38 KOG0337 ATP-dependent RNA heli 100.0 5.6E-47 1.2E-51 323.5 21.4 364 32-396 20-387 (529)
39 TIGR01389 recQ ATP-dependent D 100.0 4.5E-45 9.8E-50 352.5 36.1 322 47-385 4-339 (591)
40 KOG0350 DEAD-box ATP-dependent 100.0 2.8E-45 6E-50 319.5 26.0 359 32-391 126-554 (620)
41 PRK13767 ATP-dependent helicas 100.0 3.1E-44 6.7E-49 356.9 36.7 332 40-375 18-396 (876)
42 PRK00254 ski2-like helicase; P 100.0 3.3E-44 7.1E-49 352.9 33.5 332 34-379 2-390 (720)
43 KOG0344 ATP-dependent RNA heli 100.0 2.9E-45 6.2E-50 326.6 23.4 375 29-403 128-521 (593)
44 COG1201 Lhr Lhr-like helicases 100.0 7E-44 1.5E-48 339.0 32.8 352 40-397 8-384 (814)
45 TIGR00580 mfd transcription-re 100.0 5.2E-42 1.1E-46 337.4 38.3 321 40-377 436-770 (926)
46 PRK01172 ski2-like helicase; P 100.0 1.2E-42 2.6E-47 340.6 31.1 340 34-390 2-389 (674)
47 PRK10917 ATP-dependent DNA hel 100.0 1.8E-41 4E-46 329.5 35.2 315 46-376 253-588 (681)
48 PRK10689 transcription-repair 100.0 3.9E-41 8.6E-46 338.1 38.1 319 42-377 588-919 (1147)
49 COG0514 RecQ Superfamily II DN 100.0 8.5E-42 1.8E-46 313.6 29.4 330 46-389 7-349 (590)
50 TIGR00643 recG ATP-dependent D 100.0 7.3E-41 1.6E-45 323.4 34.2 317 43-375 224-564 (630)
51 TIGR02621 cas3_GSU0051 CRISPR- 100.0 6.2E-41 1.4E-45 320.7 33.0 306 51-367 12-380 (844)
52 COG1111 MPH1 ERCC4-like helica 100.0 5.9E-40 1.3E-44 288.4 33.0 326 53-383 13-487 (542)
53 PRK09751 putative ATP-dependen 100.0 8.2E-40 1.8E-44 330.3 33.3 321 75-398 1-408 (1490)
54 PHA02558 uvsW UvsW helicase; P 100.0 4.8E-40 1E-44 310.1 29.0 300 54-368 113-443 (501)
55 COG1202 Superfamily II helicas 100.0 2.5E-40 5.5E-45 293.4 23.7 339 31-378 192-554 (830)
56 KOG0329 ATP-dependent RNA heli 100.0 2.3E-41 5E-46 271.0 15.1 331 34-400 43-379 (387)
57 PRK09401 reverse gyrase; Revie 100.0 5.5E-38 1.2E-42 316.2 34.6 283 51-349 77-410 (1176)
58 PHA02653 RNA helicase NPH-II; 100.0 5.4E-38 1.2E-42 299.0 30.7 316 57-386 166-523 (675)
59 COG1204 Superfamily II helicas 100.0 1.9E-38 4.1E-43 306.1 25.6 331 39-376 15-407 (766)
60 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.8E-37 1E-41 299.4 30.8 306 58-380 5-339 (819)
61 TIGR01587 cas3_core CRISPR-ass 100.0 1.9E-37 4.2E-42 283.4 26.1 298 72-378 1-337 (358)
62 PRK11664 ATP-dependent RNA hel 100.0 3.8E-37 8.2E-42 300.9 29.7 305 58-379 8-341 (812)
63 COG1205 Distinct helicase fami 100.0 9.5E-37 2.1E-41 298.4 32.4 347 41-390 56-437 (851)
64 PRK13766 Hef nuclease; Provisi 100.0 7.2E-36 1.6E-40 298.3 36.9 322 54-380 14-482 (773)
65 PRK14701 reverse gyrase; Provi 100.0 1.3E-36 2.9E-41 312.4 31.0 325 45-383 69-462 (1638)
66 TIGR00603 rad25 DNA repair hel 100.0 2.7E-36 5.8E-41 286.1 30.3 315 55-391 255-623 (732)
67 KOG0354 DEAD-box like helicase 100.0 2.3E-36 5E-41 281.1 26.0 328 53-386 60-538 (746)
68 PRK12898 secA preprotein trans 100.0 3.2E-35 6.9E-40 275.7 30.9 318 51-381 100-590 (656)
69 TIGR01054 rgy reverse gyrase. 100.0 8E-35 1.7E-39 293.8 34.4 287 47-348 70-408 (1171)
70 TIGR03158 cas3_cyano CRISPR-as 100.0 1E-34 2.2E-39 262.2 29.9 287 59-362 1-357 (357)
71 PRK09200 preprotein translocas 100.0 9.4E-35 2E-39 278.3 30.2 319 51-381 75-545 (790)
72 TIGR03714 secA2 accessory Sec 100.0 2.3E-34 4.9E-39 273.1 29.8 317 56-381 69-541 (762)
73 TIGR00963 secA preprotein tran 100.0 8E-34 1.7E-38 267.7 30.9 318 51-381 53-521 (745)
74 KOG0351 ATP-dependent DNA heli 100.0 2.5E-34 5.4E-39 279.5 27.6 327 49-387 258-602 (941)
75 KOG0952 DNA/RNA helicase MER3/ 100.0 1.9E-34 4.2E-39 271.9 25.7 328 51-385 106-499 (1230)
76 KOG0353 ATP-dependent DNA heli 100.0 3.6E-34 7.7E-39 242.7 22.7 341 31-383 69-473 (695)
77 COG1200 RecG RecG-like helicas 100.0 3.4E-33 7.3E-38 256.3 30.8 337 40-392 247-606 (677)
78 COG1061 SSL2 DNA or RNA helica 100.0 9.3E-34 2E-38 262.1 25.9 291 54-364 35-376 (442)
79 KOG0352 ATP-dependent DNA heli 100.0 1.1E-33 2.5E-38 242.7 20.1 328 43-386 6-371 (641)
80 PRK04914 ATP-dependent helicas 100.0 4.8E-32 1E-36 266.1 30.9 334 55-393 152-619 (956)
81 PRK11131 ATP-dependent RNA hel 100.0 2.3E-31 5E-36 264.9 28.0 302 57-380 76-414 (1294)
82 KOG0947 Cytoplasmic exosomal R 100.0 1.3E-31 2.9E-36 250.2 24.3 309 51-377 294-723 (1248)
83 KOG0349 Putative DEAD-box RNA 100.0 3.4E-32 7.4E-37 234.2 18.5 274 102-375 287-613 (725)
84 PRK05580 primosome assembly pr 100.0 3.5E-30 7.7E-35 249.7 34.6 307 55-377 144-549 (679)
85 COG1197 Mfd Transcription-repa 100.0 2.9E-30 6.3E-35 250.0 32.8 320 40-377 579-913 (1139)
86 PRK09694 helicase Cas3; Provis 100.0 2.9E-30 6.2E-35 252.1 33.0 307 55-366 286-664 (878)
87 KOG0951 RNA helicase BRR2, DEA 100.0 5.6E-31 1.2E-35 251.9 24.2 335 38-380 294-705 (1674)
88 cd00268 DEADc DEAD-box helicas 100.0 2.5E-30 5.4E-35 217.5 22.9 198 35-232 1-202 (203)
89 KOG0948 Nuclear exosomal RNA h 100.0 3.9E-31 8.5E-36 241.4 18.8 311 55-381 129-544 (1041)
90 COG4098 comFA Superfamily II D 100.0 3.8E-29 8.2E-34 209.5 27.3 312 55-387 97-426 (441)
91 TIGR00595 priA primosomal prot 100.0 5.2E-29 1.1E-33 233.2 29.6 288 74-378 1-383 (505)
92 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.1E-29 6.7E-34 250.7 28.0 301 61-380 73-407 (1283)
93 PRK11448 hsdR type I restricti 100.0 3.5E-29 7.6E-34 251.3 27.1 310 55-375 413-813 (1123)
94 COG4581 Superfamily II RNA hel 100.0 3.8E-29 8.3E-34 242.1 25.0 313 49-375 114-535 (1041)
95 PRK12904 preprotein translocas 100.0 3E-28 6.5E-33 233.1 30.0 317 51-380 78-576 (830)
96 PRK13104 secA preprotein trans 100.0 2.5E-27 5.4E-32 227.0 30.3 318 51-381 79-591 (896)
97 PRK12906 secA preprotein trans 100.0 6.1E-28 1.3E-32 230.0 25.7 318 51-381 77-557 (796)
98 PLN03142 Probable chromatin-re 100.0 2.5E-27 5.5E-32 233.7 28.4 319 55-379 169-601 (1033)
99 PRK12899 secA preprotein trans 100.0 7.4E-26 1.6E-30 216.7 28.9 146 36-186 65-228 (970)
100 KOG0950 DNA polymerase theta/e 100.0 4.5E-27 9.7E-32 221.3 20.2 325 46-383 214-617 (1008)
101 COG1203 CRISPR-associated heli 100.0 1.3E-26 2.9E-31 227.0 22.2 319 55-377 195-550 (733)
102 COG1643 HrpA HrpA-like helicas 99.9 6.8E-26 1.5E-30 218.3 23.5 310 55-379 50-389 (845)
103 PRK13107 preprotein translocas 99.9 4.1E-25 8.8E-30 211.3 25.1 317 51-380 79-594 (908)
104 PF00270 DEAD: DEAD/DEAH box h 99.9 9.6E-26 2.1E-30 184.1 17.5 162 57-219 1-167 (169)
105 COG1110 Reverse gyrase [DNA re 99.9 1.1E-24 2.3E-29 206.6 26.1 279 52-348 80-416 (1187)
106 KOG0922 DEAH-box RNA helicase 99.9 4.1E-25 8.9E-30 201.4 22.2 307 56-380 52-393 (674)
107 COG4096 HsdR Type I site-speci 99.9 1.2E-24 2.6E-29 203.0 21.0 308 54-379 164-547 (875)
108 TIGR00348 hsdR type I site-spe 99.9 9.7E-24 2.1E-28 204.9 26.7 297 55-364 238-634 (667)
109 KOG0387 Transcription-coupled 99.9 1.9E-23 4E-28 193.0 24.6 333 55-393 205-674 (923)
110 KOG0385 Chromatin remodeling c 99.9 5.9E-23 1.3E-27 189.0 25.6 320 55-380 167-602 (971)
111 COG1198 PriA Primosomal protei 99.9 1.6E-22 3.4E-27 192.3 24.8 307 55-378 198-604 (730)
112 KOG0390 DNA repair protein, SN 99.9 1.8E-21 4E-26 184.1 29.9 327 55-391 238-721 (776)
113 TIGR01407 dinG_rel DnaQ family 99.9 1.8E-21 3.9E-26 195.0 31.8 329 41-377 232-814 (850)
114 KOG0920 ATP-dependent RNA heli 99.9 3.4E-22 7.4E-27 192.2 23.9 337 55-401 173-571 (924)
115 KOG0923 mRNA splicing factor A 99.9 7.1E-23 1.5E-27 185.6 17.6 310 52-376 262-605 (902)
116 PRK12900 secA preprotein trans 99.9 3.5E-22 7.6E-27 192.2 22.1 125 255-381 581-715 (1025)
117 TIGR00631 uvrb excinuclease AB 99.9 1.5E-20 3.4E-25 180.5 31.7 131 257-388 427-564 (655)
118 KOG1123 RNA polymerase II tran 99.9 3.8E-22 8.2E-27 175.5 18.6 310 55-386 302-662 (776)
119 PRK12326 preprotein translocas 99.9 6.7E-21 1.5E-25 178.4 27.9 316 51-380 75-550 (764)
120 KOG0925 mRNA splicing factor A 99.9 4.4E-22 9.6E-27 174.5 18.6 326 31-377 23-387 (699)
121 KOG0924 mRNA splicing factor A 99.9 4.5E-22 9.9E-27 180.9 17.7 310 52-377 353-697 (1042)
122 KOG0926 DEAH-box RNA helicase 99.9 1.8E-21 3.9E-26 179.9 16.6 305 61-377 262-704 (1172)
123 KOG0949 Predicted helicase, DE 99.9 5.9E-21 1.3E-25 179.9 20.0 158 55-217 511-674 (1330)
124 COG0556 UvrB Helicase subunit 99.9 1.2E-19 2.5E-24 161.5 25.4 174 205-386 387-566 (663)
125 PRK05298 excinuclease ABC subu 99.9 1.2E-19 2.6E-24 175.7 27.6 143 257-400 431-589 (652)
126 PRK13103 secA preprotein trans 99.9 6.5E-20 1.4E-24 176.0 24.7 315 51-379 79-593 (913)
127 smart00487 DEXDc DEAD-like hel 99.9 3.3E-20 7.2E-25 155.7 20.1 185 50-235 3-191 (201)
128 KOG1000 Chromatin remodeling p 99.9 2E-19 4.4E-24 158.3 24.5 327 54-390 197-618 (689)
129 KOG0384 Chromodomain-helicase 99.9 3.1E-20 6.8E-25 179.1 21.1 319 54-379 369-813 (1373)
130 PRK07246 bifunctional ATP-depe 99.9 5E-19 1.1E-23 175.0 30.1 314 51-377 242-783 (820)
131 KOG0392 SNF2 family DNA-depend 99.9 3.9E-20 8.4E-25 178.0 19.4 318 55-378 975-1455(1549)
132 COG4889 Predicted helicase [Ge 99.8 5.2E-21 1.1E-25 178.4 11.6 346 44-395 150-619 (1518)
133 KOG0389 SNF2 family DNA-depend 99.8 3.7E-19 8.1E-24 164.7 23.2 316 55-380 399-891 (941)
134 PRK12903 secA preprotein trans 99.8 1.1E-18 2.4E-23 166.0 26.5 316 51-380 75-542 (925)
135 PRK08074 bifunctional ATP-depe 99.8 1.4E-17 3E-22 167.9 29.4 109 269-377 751-893 (928)
136 CHL00122 secA preprotein trans 99.8 8.8E-18 1.9E-22 160.9 25.7 274 51-337 73-491 (870)
137 TIGR03117 cas_csf4 CRISPR-asso 99.8 9.1E-17 2E-21 152.2 30.2 116 259-377 460-616 (636)
138 cd00079 HELICc Helicase superf 99.8 1.5E-18 3.1E-23 135.2 14.5 118 256-373 12-131 (131)
139 KOG4150 Predicted ATP-dependen 99.8 9.3E-18 2E-22 150.4 17.9 344 54-400 285-665 (1034)
140 PRK12902 secA preprotein trans 99.8 3.6E-16 7.7E-21 149.7 27.1 274 51-337 82-506 (939)
141 TIGR02562 cas3_yersinia CRISPR 99.8 6.5E-17 1.4E-21 157.0 21.9 309 54-367 407-882 (1110)
142 PF04851 ResIII: Type III rest 99.8 5.6E-18 1.2E-22 140.2 12.7 150 55-215 3-183 (184)
143 KOG0953 Mitochondrial RNA heli 99.8 2.9E-17 6.2E-22 146.9 17.1 278 73-394 194-490 (700)
144 cd00046 DEXDc DEAD-like helica 99.8 4.2E-17 9.1E-22 128.9 15.7 142 71-214 1-144 (144)
145 PF00271 Helicase_C: Helicase 99.8 3.6E-18 7.7E-23 119.5 8.1 78 288-365 1-78 (78)
146 PRK11747 dinG ATP-dependent DN 99.7 8.9E-15 1.9E-19 143.2 29.5 113 259-377 525-674 (697)
147 COG1199 DinG Rad3-related DNA 99.7 3.6E-15 7.9E-20 147.0 26.8 116 258-377 468-617 (654)
148 KOG0386 Chromatin remodeling c 99.7 2.2E-16 4.7E-21 150.1 13.3 319 54-377 393-836 (1157)
149 KOG0951 RNA helicase BRR2, DEA 99.7 4.6E-15 9.9E-20 144.1 18.5 307 55-383 1143-1500(1674)
150 KOG4439 RNA polymerase II tran 99.7 7.9E-15 1.7E-19 134.8 19.1 122 257-378 730-859 (901)
151 TIGR00604 rad3 DNA repair heli 99.7 5.1E-14 1.1E-18 139.0 26.2 74 51-124 6-83 (705)
152 KOG0388 SNF2 family DNA-depend 99.7 6.5E-15 1.4E-19 135.4 17.5 123 257-379 1029-1156(1185)
153 PRK12901 secA preprotein trans 99.6 2.1E-14 4.5E-19 139.3 21.1 121 256-379 612-743 (1112)
154 PRK14873 primosome assembly pr 99.6 6.4E-14 1.4E-18 134.8 23.7 139 74-223 164-312 (665)
155 PF02399 Herpes_ori_bp: Origin 99.6 5E-14 1.1E-18 133.9 21.7 289 72-377 51-388 (824)
156 smart00490 HELICc helicase sup 99.6 1.7E-15 3.7E-20 107.3 8.8 81 285-365 2-82 (82)
157 KOG1002 Nucleotide excision re 99.6 6.9E-14 1.5E-18 123.8 19.6 112 269-380 637-752 (791)
158 KOG0391 SNF2 family DNA-depend 99.6 5.8E-14 1.3E-18 135.3 20.5 125 256-380 1260-1390(1958)
159 KOG1015 Transcription regulato 99.5 2.5E-13 5.5E-18 128.7 17.0 117 257-373 1127-1271(1567)
160 COG0610 Type I site-specific r 99.5 2.7E-12 5.8E-17 129.2 23.8 294 71-375 274-651 (962)
161 COG0553 HepA Superfamily II DN 99.5 3.4E-12 7.3E-17 131.1 23.2 320 54-378 337-823 (866)
162 PF06862 DUF1253: Protein of u 99.5 6.4E-11 1.4E-15 107.3 26.9 288 98-385 34-423 (442)
163 PF00176 SNF2_N: SNF2 family N 99.4 3.5E-13 7.6E-18 120.6 9.7 140 70-216 25-174 (299)
164 PF07652 Flavi_DEAD: Flaviviru 99.4 1.3E-12 2.9E-17 98.3 10.6 133 69-217 3-139 (148)
165 COG0653 SecA Preprotein transl 99.4 4.5E-11 9.7E-16 114.8 18.1 311 55-378 80-546 (822)
166 smart00489 DEXDc3 DEAD-like he 99.2 2.1E-10 4.5E-15 100.7 12.7 73 51-124 5-84 (289)
167 smart00488 DEXDc2 DEAD-like he 99.2 2.1E-10 4.5E-15 100.7 12.7 73 51-124 5-84 (289)
168 PRK15483 type III restriction- 99.2 2.3E-08 4.9E-13 98.8 27.8 74 320-393 501-584 (986)
169 KOG2340 Uncharacterized conser 99.1 4.5E-09 9.7E-14 94.6 16.4 330 52-381 213-672 (698)
170 PF07517 SecA_DEAD: SecA DEAD- 99.0 7.7E-09 1.7E-13 88.3 13.8 128 51-186 74-210 (266)
171 KOG1016 Predicted DNA helicase 98.9 5.1E-07 1.1E-11 85.2 21.6 105 271-375 720-845 (1387)
172 KOG1133 Helicase of the DEAD s 98.9 1.3E-06 2.8E-11 81.7 23.3 109 265-377 625-780 (821)
173 PF13872 AAA_34: P-loop contai 98.9 2.9E-08 6.2E-13 85.0 11.3 166 38-217 26-223 (303)
174 COG3587 Restriction endonuclea 98.8 4E-07 8.6E-12 87.0 18.7 74 319-392 482-568 (985)
175 PF13086 AAA_11: AAA domain; P 98.8 2.8E-08 6.1E-13 85.4 9.1 69 55-123 1-75 (236)
176 PF13307 Helicase_C_2: Helicas 98.8 2E-08 4.3E-13 80.9 7.3 112 263-377 3-150 (167)
177 PF02562 PhoH: PhoH-like prote 98.7 1E-08 2.3E-13 83.9 4.6 146 54-213 3-155 (205)
178 PF12340 DUF3638: Protein of u 98.7 6.9E-07 1.5E-11 73.9 13.4 127 34-165 4-144 (229)
179 KOG0921 Dosage compensation co 98.6 1.2E-07 2.5E-12 90.8 8.7 311 58-376 381-773 (1282)
180 KOG1802 RNA helicase nonsense 98.6 2.2E-06 4.8E-11 79.8 15.4 77 47-125 402-478 (935)
181 KOG1001 Helicase-like transcri 98.6 2.5E-07 5.4E-12 89.3 9.7 101 272-372 541-643 (674)
182 PF13604 AAA_30: AAA domain; P 98.6 3.2E-07 7E-12 75.9 9.0 121 55-213 1-130 (196)
183 TIGR00596 rad1 DNA repair prot 98.5 5.8E-06 1.3E-10 81.9 17.1 65 151-215 7-73 (814)
184 KOG0952 DNA/RNA helicase MER3/ 98.5 3.2E-08 6.8E-13 96.2 1.3 130 55-188 927-1061(1230)
185 PRK10536 hypothetical protein; 98.5 7.5E-07 1.6E-11 75.1 8.5 143 51-211 55-210 (262)
186 KOG1131 RNA polymerase II tran 98.5 0.00021 4.5E-09 65.2 23.8 105 271-376 531-680 (755)
187 PF13245 AAA_19: Part of AAA d 98.3 2.2E-06 4.7E-11 58.6 6.4 52 70-121 10-62 (76)
188 TIGR01447 recD exodeoxyribonuc 98.3 1.3E-05 2.8E-10 77.3 12.5 139 57-213 147-295 (586)
189 PF09848 DUF2075: Uncharacteri 98.2 6.8E-06 1.5E-10 74.9 9.7 106 72-200 3-117 (352)
190 PRK10875 recD exonuclease V su 98.2 2.6E-05 5.7E-10 75.3 13.1 139 57-213 154-301 (615)
191 TIGR01448 recD_rel helicase, p 98.2 3.3E-05 7.2E-10 76.7 13.6 133 51-213 320-452 (720)
192 KOG1803 DNA helicase [Replicat 98.1 1.6E-05 3.5E-10 73.7 9.4 65 55-122 185-250 (649)
193 COG3421 Uncharacterized protei 98.1 1.4E-05 3E-10 73.9 8.7 139 75-217 2-168 (812)
194 KOG1132 Helicase of the DEAD s 98.0 3.6E-05 7.7E-10 74.4 10.4 71 55-125 21-134 (945)
195 PF00580 UvrD-helicase: UvrD/R 98.0 2.7E-05 5.9E-10 70.1 7.8 120 56-183 1-125 (315)
196 smart00492 HELICc3 helicase su 97.9 7.5E-05 1.6E-09 57.9 9.0 78 299-376 26-137 (141)
197 smart00491 HELICc2 helicase su 97.9 5E-05 1.1E-09 59.0 8.0 95 282-376 3-138 (142)
198 KOG0989 Replication factor C, 97.9 5.9E-05 1.3E-09 64.4 7.8 57 170-227 126-185 (346)
199 COG1875 NYN ribonuclease and A 97.9 6.8E-05 1.5E-09 65.6 8.1 64 51-114 224-289 (436)
200 KOG1805 DNA replication helica 97.9 8.2E-05 1.8E-09 72.7 9.4 137 38-187 656-810 (1100)
201 PF13401 AAA_22: AAA domain; P 97.8 6.2E-05 1.3E-09 58.1 7.0 26 69-94 3-28 (131)
202 KOG1513 Nuclear helicase MOP-3 97.8 4.6E-05 1E-09 72.7 6.9 153 55-213 264-453 (1300)
203 PF00448 SRP54: SRP54-type pro 97.8 0.0001 2.2E-09 60.8 8.3 132 73-225 4-136 (196)
204 PRK12723 flagellar biosynthesi 97.7 0.00062 1.3E-08 62.1 12.3 129 71-225 175-309 (388)
205 COG1419 FlhF Flagellar GTP-bin 97.7 0.00076 1.6E-08 60.7 12.3 133 70-227 203-337 (407)
206 PRK04296 thymidine kinase; Pro 97.7 0.00016 3.4E-09 59.7 7.3 35 72-109 4-38 (190)
207 PRK14974 cell division protein 97.7 0.00074 1.6E-08 60.4 11.9 130 72-225 142-275 (336)
208 TIGR02768 TraA_Ti Ti-type conj 97.7 0.00093 2E-08 66.8 13.9 60 55-117 352-412 (744)
209 PRK06526 transposase; Provisio 97.7 0.00049 1.1E-08 59.3 10.4 38 67-107 95-132 (254)
210 TIGR00376 DNA helicase, putati 97.6 0.00028 6.1E-09 69.1 9.5 67 55-124 157-224 (637)
211 PRK08181 transposase; Validate 97.6 0.0019 4.1E-08 56.0 13.1 46 68-117 104-149 (269)
212 cd00009 AAA The AAA+ (ATPases 97.6 0.0011 2.4E-08 52.0 10.8 22 70-91 19-40 (151)
213 PRK13889 conjugal transfer rel 97.6 0.0015 3.2E-08 66.6 13.9 124 51-213 343-470 (988)
214 smart00382 AAA ATPases associa 97.6 0.00043 9.2E-09 54.0 8.1 40 70-112 2-41 (148)
215 PF13871 Helicase_C_4: Helicas 97.5 0.00036 7.7E-09 60.0 7.2 67 311-377 52-127 (278)
216 PRK14722 flhF flagellar biosyn 97.4 0.0017 3.7E-08 58.8 10.8 131 70-225 137-269 (374)
217 PRK13826 Dtr system oriT relax 97.4 0.0042 9.1E-08 63.9 14.3 134 41-213 368-505 (1102)
218 PRK11889 flhF flagellar biosyn 97.3 0.007 1.5E-07 54.8 13.6 127 71-225 242-374 (436)
219 PRK14956 DNA polymerase III su 97.3 0.0013 2.8E-08 61.2 9.1 22 72-93 42-63 (484)
220 PRK05707 DNA polymerase III su 97.2 0.0019 4.1E-08 57.9 9.1 41 55-95 3-47 (328)
221 TIGR01074 rep ATP-dependent DN 97.2 0.0022 4.7E-08 64.1 10.4 68 56-125 2-70 (664)
222 PRK11054 helD DNA helicase IV; 97.2 0.0015 3.3E-08 64.4 8.9 70 54-125 195-265 (684)
223 cd01124 KaiC KaiC is a circadi 97.2 0.0025 5.5E-08 52.4 8.9 48 73-124 2-49 (187)
224 PRK05703 flhF flagellar biosyn 97.2 0.0079 1.7E-07 56.0 12.8 128 70-225 221-354 (424)
225 PRK10919 ATP-dependent DNA hel 97.2 0.0011 2.3E-08 65.9 7.4 69 55-125 2-71 (672)
226 PRK05642 DNA replication initi 97.1 0.0026 5.7E-08 54.3 8.7 44 173-216 97-141 (234)
227 PF00308 Bac_DnaA: Bacterial d 97.1 0.0015 3.2E-08 55.2 6.7 107 71-217 35-143 (219)
228 KOG0383 Predicted helicase [Ge 97.1 4.3E-05 9.3E-10 73.4 -3.0 76 257-333 616-696 (696)
229 PRK08727 hypothetical protein; 97.1 0.0032 7E-08 53.8 8.6 35 71-108 42-76 (233)
230 PRK07764 DNA polymerase III su 97.1 0.0044 9.5E-08 62.4 10.7 40 171-211 118-157 (824)
231 PRK06921 hypothetical protein; 97.0 0.017 3.8E-07 50.2 12.8 38 70-109 117-154 (266)
232 PRK07003 DNA polymerase III su 97.0 0.0049 1.1E-07 60.4 10.2 39 172-211 118-156 (830)
233 PRK09183 transposase/IS protei 97.0 0.011 2.4E-07 51.3 11.6 45 67-115 99-143 (259)
234 PF05127 Helicase_RecD: Helica 97.0 0.0012 2.7E-08 52.9 5.2 123 74-215 1-124 (177)
235 cd01120 RecA-like_NTPases RecA 97.0 0.0079 1.7E-07 48.1 10.1 37 73-112 2-38 (165)
236 KOG0298 DEAD box-containing he 97.0 0.003 6.6E-08 64.0 8.8 146 70-220 374-556 (1394)
237 PRK00149 dnaA chromosomal repl 97.0 0.0041 9E-08 58.8 9.4 45 71-117 149-193 (450)
238 PRK08533 flagellar accessory p 97.0 0.0098 2.1E-07 50.6 10.6 53 68-124 22-74 (230)
239 KOG0739 AAA+-type ATPase [Post 97.0 0.016 3.6E-07 49.7 11.6 143 29-221 126-284 (439)
240 PRK06893 DNA replication initi 97.0 0.0033 7.2E-08 53.6 7.8 46 172-217 90-137 (229)
241 TIGR02760 TraI_TIGR conjugativ 97.0 0.071 1.5E-06 59.3 19.3 208 55-292 429-648 (1960)
242 PRK07952 DNA replication prote 97.0 0.016 3.5E-07 49.5 11.6 108 71-218 100-209 (244)
243 TIGR01075 uvrD DNA helicase II 97.0 0.0021 4.6E-08 64.6 7.3 70 55-126 4-74 (715)
244 PRK14087 dnaA chromosomal repl 96.9 0.0062 1.3E-07 57.3 9.9 49 71-121 142-190 (450)
245 PRK14949 DNA polymerase III su 96.9 0.0043 9.3E-08 61.9 9.0 38 172-210 118-155 (944)
246 PRK11773 uvrD DNA-dependent he 96.9 0.0026 5.7E-08 63.9 7.5 69 55-125 9-78 (721)
247 PF05970 PIF1: PIF1-like helic 96.9 0.0028 6.1E-08 58.0 7.1 58 55-115 1-64 (364)
248 PRK12323 DNA polymerase III su 96.9 0.0061 1.3E-07 58.8 9.4 41 171-212 122-162 (700)
249 PF13177 DNA_pol3_delta2: DNA 96.9 0.0085 1.8E-07 47.9 9.0 119 72-215 21-143 (162)
250 PRK12377 putative replication 96.9 0.016 3.4E-07 49.7 11.1 44 71-118 102-145 (248)
251 PF00004 AAA: ATPase family as 96.9 0.017 3.7E-07 44.2 10.5 19 73-91 1-19 (132)
252 PRK14964 DNA polymerase III su 96.9 0.0088 1.9E-07 56.4 10.2 40 171-211 114-153 (491)
253 COG2256 MGS1 ATPase related to 96.9 0.0027 5.8E-08 56.8 6.4 20 71-90 49-68 (436)
254 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0079 1.7E-07 51.2 9.2 26 69-94 37-62 (226)
255 TIGR00362 DnaA chromosomal rep 96.9 0.0066 1.4E-07 56.7 9.4 38 71-109 137-174 (405)
256 PRK14958 DNA polymerase III su 96.9 0.0081 1.7E-07 57.4 10.0 39 172-211 118-156 (509)
257 PRK14960 DNA polymerase III su 96.9 0.0072 1.6E-07 58.4 9.5 39 172-211 117-155 (702)
258 PRK00771 signal recognition pa 96.8 0.014 3.1E-07 54.3 11.1 129 72-225 97-228 (437)
259 KOG0738 AAA+-type ATPase [Post 96.8 0.0056 1.2E-07 54.4 7.9 82 31-119 181-287 (491)
260 PRK08769 DNA polymerase III su 96.8 0.011 2.5E-07 52.6 10.1 43 54-96 3-52 (319)
261 COG1222 RPT1 ATP-dependent 26S 96.8 0.021 4.5E-07 50.5 11.2 79 27-115 142-223 (406)
262 PRK08903 DnaA regulatory inact 96.8 0.0091 2E-07 50.9 9.1 26 69-94 41-66 (227)
263 TIGR02881 spore_V_K stage V sp 96.8 0.004 8.6E-08 54.3 6.9 21 71-91 43-63 (261)
264 PRK08084 DNA replication initi 96.8 0.0082 1.8E-07 51.3 8.7 37 70-109 45-81 (235)
265 PRK14961 DNA polymerase III su 96.8 0.0082 1.8E-07 55.0 9.1 39 172-211 118-156 (363)
266 PLN03025 replication factor C 96.8 0.015 3.2E-07 52.4 10.5 39 173-213 99-137 (319)
267 PRK14952 DNA polymerase III su 96.7 0.014 3E-07 56.4 10.7 40 171-211 116-155 (584)
268 PRK06731 flhF flagellar biosyn 96.7 0.045 9.7E-07 47.6 12.8 127 71-225 76-208 (270)
269 PRK07994 DNA polymerase III su 96.7 0.0091 2E-07 58.2 9.3 38 172-210 118-155 (647)
270 PRK08116 hypothetical protein; 96.7 0.024 5.2E-07 49.4 11.2 42 71-116 115-156 (268)
271 PRK14712 conjugal transfer nic 96.7 0.013 2.7E-07 62.6 10.9 62 55-117 835-900 (1623)
272 PRK14088 dnaA chromosomal repl 96.7 0.018 3.8E-07 54.2 11.0 38 71-109 131-168 (440)
273 COG1435 Tdk Thymidine kinase [ 96.7 0.019 4.2E-07 46.3 9.5 102 72-200 6-108 (201)
274 TIGR01547 phage_term_2 phage t 96.7 0.0046 1E-07 57.6 7.0 139 72-217 3-143 (396)
275 TIGR01425 SRP54_euk signal rec 96.7 0.039 8.4E-07 51.1 12.5 130 73-225 103-235 (429)
276 PRK06835 DNA replication prote 96.6 0.032 6.8E-07 50.1 11.6 43 70-116 183-225 (329)
277 CHL00181 cbbX CbbX; Provisiona 96.6 0.0082 1.8E-07 52.9 7.6 23 70-92 59-81 (287)
278 PF03354 Terminase_1: Phage Te 96.6 0.0059 1.3E-07 58.2 7.3 70 58-127 1-80 (477)
279 TIGR02880 cbbX_cfxQ probable R 96.6 0.014 3.1E-07 51.4 9.1 20 70-89 58-77 (284)
280 PF13173 AAA_14: AAA domain 96.6 0.042 9E-07 42.0 10.5 40 173-216 61-100 (128)
281 PRK14962 DNA polymerase III su 96.6 0.015 3.2E-07 55.0 9.4 22 72-93 38-59 (472)
282 PRK14957 DNA polymerase III su 96.6 0.017 3.6E-07 55.4 9.8 40 171-211 117-156 (546)
283 PRK08691 DNA polymerase III su 96.6 0.02 4.3E-07 55.9 10.3 40 171-211 117-156 (709)
284 PTZ00293 thymidine kinase; Pro 96.6 0.017 3.6E-07 47.8 8.5 39 70-111 4-42 (211)
285 PHA02533 17 large terminase pr 96.5 0.014 3E-07 56.0 9.1 70 55-125 59-128 (534)
286 PRK14951 DNA polymerase III su 96.5 0.015 3.2E-07 56.6 9.3 39 172-211 123-161 (618)
287 TIGR00678 holB DNA polymerase 96.5 0.02 4.4E-07 47.1 8.9 25 71-95 15-39 (188)
288 PRK12727 flagellar biosynthesi 96.5 0.039 8.4E-07 52.2 11.5 119 69-215 349-470 (559)
289 PRK13709 conjugal transfer nic 96.5 0.027 5.9E-07 61.0 11.7 62 55-117 967-1032(1747)
290 PRK06871 DNA polymerase III su 96.5 0.021 4.5E-07 51.0 9.3 41 56-96 3-50 (325)
291 PHA02544 44 clamp loader, smal 96.5 0.018 3.8E-07 51.9 9.1 39 173-211 100-138 (316)
292 PRK08451 DNA polymerase III su 96.5 0.024 5.3E-07 54.0 10.2 40 171-211 115-154 (535)
293 PRK12402 replication factor C 96.5 0.038 8.2E-07 50.3 11.3 39 172-211 124-162 (337)
294 PRK12726 flagellar biosynthesi 96.4 0.07 1.5E-06 48.4 12.3 119 70-216 206-329 (407)
295 PRK12422 chromosomal replicati 96.4 0.021 4.6E-07 53.6 9.5 41 71-115 142-182 (445)
296 PRK14721 flhF flagellar biosyn 96.4 0.052 1.1E-06 50.2 11.7 130 70-224 191-322 (420)
297 cd01122 GP4d_helicase GP4d_hel 96.4 0.017 3.6E-07 50.8 8.3 64 44-109 4-67 (271)
298 PRK08699 DNA polymerase III su 96.4 0.027 5.8E-07 50.6 9.5 40 56-95 2-46 (325)
299 PRK14969 DNA polymerase III su 96.4 0.023 5E-07 54.7 9.7 40 171-211 117-156 (527)
300 PRK06964 DNA polymerase III su 96.4 0.024 5.3E-07 51.0 9.2 40 56-95 2-46 (342)
301 TIGR02785 addA_Gpos recombinat 96.4 0.0096 2.1E-07 63.4 7.7 68 56-125 2-69 (1232)
302 PRK14086 dnaA chromosomal repl 96.4 0.02 4.4E-07 55.2 9.0 107 71-217 315-423 (617)
303 PRK06645 DNA polymerase III su 96.4 0.033 7.1E-07 53.0 10.4 23 71-93 44-66 (507)
304 PRK12724 flagellar biosynthesi 96.3 0.071 1.5E-06 49.0 12.0 124 72-224 225-355 (432)
305 PRK14963 DNA polymerase III su 96.3 0.027 5.9E-07 53.7 9.8 21 73-93 39-59 (504)
306 TIGR01073 pcrA ATP-dependent D 96.3 0.01 2.2E-07 59.9 7.3 69 55-125 4-73 (726)
307 PRK06995 flhF flagellar biosyn 96.3 0.081 1.8E-06 49.9 12.6 25 71-95 257-281 (484)
308 PRK14955 DNA polymerase III su 96.3 0.043 9.3E-07 51.0 10.7 23 72-94 40-62 (397)
309 PRK07993 DNA polymerase III su 96.3 0.022 4.7E-07 51.3 8.4 41 55-95 2-49 (334)
310 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.14 3.1E-06 40.4 11.9 132 73-223 5-147 (159)
311 COG2909 MalT ATP-dependent tra 96.3 0.019 4.1E-07 56.4 8.2 41 175-215 131-171 (894)
312 PRK14723 flhF flagellar biosyn 96.3 0.052 1.1E-06 53.8 11.4 129 72-225 187-317 (767)
313 KOG0733 Nuclear AAA ATPase (VC 96.2 0.048 1E-06 51.7 10.4 174 32-267 507-694 (802)
314 PRK06090 DNA polymerase III su 96.2 0.038 8.3E-07 49.2 9.6 41 55-95 3-50 (319)
315 TIGR00064 ftsY signal recognit 96.2 0.079 1.7E-06 46.3 11.3 132 71-225 73-213 (272)
316 COG4626 Phage terminase-like p 96.2 0.025 5.5E-07 53.1 8.4 71 55-125 61-142 (546)
317 PRK05896 DNA polymerase III su 96.2 0.032 6.8E-07 53.8 9.3 24 71-94 39-62 (605)
318 KOG0991 Replication factor C, 96.2 0.0057 1.2E-07 50.5 3.7 38 172-210 112-149 (333)
319 PRK05973 replicative DNA helic 96.2 0.014 3E-07 49.5 6.1 85 35-124 20-114 (237)
320 PRK05563 DNA polymerase III su 96.2 0.033 7.1E-07 54.1 9.4 23 71-93 39-61 (559)
321 PRK14965 DNA polymerase III su 96.2 0.046 9.9E-07 53.3 10.4 40 171-211 117-156 (576)
322 PRK09111 DNA polymerase III su 96.1 0.041 8.8E-07 53.6 10.0 40 171-211 130-169 (598)
323 PF06745 KaiC: KaiC; InterPro 96.1 0.028 6E-07 47.9 8.1 53 69-125 18-71 (226)
324 PRK11823 DNA repair protein Ra 96.1 0.029 6.2E-07 52.9 8.7 52 70-125 80-131 (446)
325 KOG2028 ATPase related to the 96.1 0.022 4.8E-07 50.4 7.2 49 71-122 163-211 (554)
326 PRK06647 DNA polymerase III su 96.1 0.034 7.3E-07 53.8 9.3 22 72-93 40-61 (563)
327 PRK13833 conjugal transfer pro 96.1 0.021 4.5E-07 51.0 7.2 65 46-113 121-186 (323)
328 PRK10867 signal recognition pa 96.1 0.083 1.8E-06 49.2 11.3 34 73-108 103-136 (433)
329 PRK14954 DNA polymerase III su 96.1 0.04 8.6E-07 53.8 9.5 41 170-211 124-164 (620)
330 TIGR01241 FtsH_fam ATP-depende 96.0 0.026 5.7E-07 54.2 8.2 58 29-89 48-107 (495)
331 cd03115 SRP The signal recogni 96.0 0.14 3E-06 41.5 11.3 23 73-95 3-25 (173)
332 TIGR03015 pepcterm_ATPase puta 96.0 0.14 3.1E-06 44.8 12.2 36 55-90 23-63 (269)
333 PHA03368 DNA packaging termina 96.0 0.026 5.7E-07 54.3 7.8 132 69-214 253-390 (738)
334 COG3973 Superfamily I DNA and 96.0 0.034 7.4E-07 52.5 8.3 82 43-125 193-284 (747)
335 TIGR03689 pup_AAA proteasome A 96.0 0.046 1E-06 51.9 9.4 56 31-89 177-235 (512)
336 PF05876 Terminase_GpA: Phage 96.0 0.014 3E-07 56.6 6.0 69 55-125 16-87 (557)
337 cd01121 Sms Sms (bacterial rad 96.0 0.048 1E-06 49.9 9.2 51 70-124 82-132 (372)
338 TIGR00959 ffh signal recogniti 96.0 0.09 1.9E-06 49.0 11.0 22 73-94 102-123 (428)
339 PRK08939 primosomal protein Dn 96.0 0.092 2E-06 46.7 10.7 26 70-95 156-181 (306)
340 PTZ00454 26S protease regulato 95.9 0.037 8E-07 51.2 8.2 57 30-89 139-198 (398)
341 PF05729 NACHT: NACHT domain 95.9 0.077 1.7E-06 42.4 9.4 27 72-98 2-28 (166)
342 TIGR02760 TraI_TIGR conjugativ 95.9 0.064 1.4E-06 59.6 11.2 61 55-117 1019-1084(1960)
343 KOG0734 AAA+-type ATPase conta 95.9 0.083 1.8E-06 49.3 10.1 54 164-217 387-450 (752)
344 PRK14950 DNA polymerase III su 95.9 0.057 1.2E-06 52.9 9.9 22 72-93 40-61 (585)
345 PRK00411 cdc6 cell division co 95.9 0.073 1.6E-06 49.6 10.3 36 71-107 56-91 (394)
346 PRK13894 conjugal transfer ATP 95.9 0.026 5.6E-07 50.5 6.9 66 45-113 124-190 (319)
347 PF14617 CMS1: U3-containing 9 95.9 0.025 5.5E-07 48.2 6.4 84 100-184 125-212 (252)
348 TIGR02782 TrbB_P P-type conjug 95.9 0.039 8.5E-07 49.0 7.9 66 45-113 108-174 (299)
349 PRK14959 DNA polymerase III su 95.9 0.063 1.4E-06 52.1 9.6 25 71-95 39-63 (624)
350 COG2805 PilT Tfp pilus assembl 95.8 0.019 4.1E-07 49.5 5.4 29 71-100 126-154 (353)
351 PTZ00112 origin recognition co 95.8 0.11 2.4E-06 52.0 11.2 19 73-91 784-802 (1164)
352 PRK04195 replication factor C 95.8 0.06 1.3E-06 51.5 9.5 21 70-90 39-59 (482)
353 COG0552 FtsY Signal recognitio 95.8 0.2 4.4E-06 44.1 11.7 132 73-225 142-280 (340)
354 PF05707 Zot: Zonular occluden 95.8 0.036 7.9E-07 45.8 7.0 25 73-97 3-28 (193)
355 PF05496 RuvB_N: Holliday junc 95.8 0.016 3.4E-07 48.2 4.6 19 71-89 51-69 (233)
356 COG1444 Predicted P-loop ATPas 95.8 0.15 3.2E-06 50.3 11.9 150 46-215 205-357 (758)
357 KOG0732 AAA+-type ATPase conta 95.8 0.028 6E-07 57.0 7.1 149 28-217 257-417 (1080)
358 TIGR03499 FlhF flagellar biosy 95.7 0.024 5.2E-07 49.9 6.0 26 71-96 195-220 (282)
359 TIGR03881 KaiC_arch_4 KaiC dom 95.7 0.091 2E-06 44.8 9.5 51 69-123 19-69 (229)
360 PRK10917 ATP-dependent DNA hel 95.7 0.072 1.6E-06 53.3 10.0 76 269-344 309-389 (681)
361 TIGR02397 dnaX_nterm DNA polym 95.7 0.073 1.6E-06 48.8 9.3 22 72-93 38-59 (355)
362 PF05621 TniB: Bacterial TniB 95.6 0.063 1.4E-06 46.8 8.0 119 71-213 62-188 (302)
363 PRK14948 DNA polymerase III su 95.6 0.08 1.7E-06 52.0 9.7 24 71-94 39-62 (620)
364 TIGR02639 ClpA ATP-dependent C 95.6 0.1 2.2E-06 52.7 10.8 23 71-93 204-226 (731)
365 PRK13342 recombination factor 95.6 0.047 1E-06 51.1 7.7 20 71-90 37-56 (413)
366 PRK05986 cob(I)alamin adenolsy 95.6 0.32 6.9E-06 39.7 11.3 144 69-223 21-167 (191)
367 PRK11331 5-methylcytosine-spec 95.6 0.13 2.9E-06 47.7 10.3 34 56-89 180-213 (459)
368 PRK13341 recombination factor 95.6 0.055 1.2E-06 53.9 8.4 20 71-90 53-72 (725)
369 COG0470 HolB ATPase involved i 95.6 0.078 1.7E-06 47.9 8.9 40 172-212 108-147 (325)
370 PRK09112 DNA polymerase III su 95.6 0.18 3.9E-06 45.9 11.0 42 171-213 139-180 (351)
371 TIGR00708 cobA cob(I)alamin ad 95.5 0.26 5.7E-06 39.5 10.6 52 172-223 96-149 (173)
372 PRK00440 rfc replication facto 95.5 0.2 4.4E-06 45.1 11.5 38 173-211 102-139 (319)
373 COG1474 CDC6 Cdc6-related prot 95.5 0.3 6.6E-06 44.6 12.3 23 71-93 43-65 (366)
374 COG1223 Predicted ATPase (AAA+ 95.5 0.087 1.9E-06 44.5 7.9 38 71-115 152-189 (368)
375 PRK07471 DNA polymerase III su 95.5 0.042 9.1E-07 50.2 6.7 42 172-214 140-181 (365)
376 PRK06067 flagellar accessory p 95.5 0.12 2.6E-06 44.2 9.3 52 70-125 25-76 (234)
377 PRK05580 primosome assembly pr 95.5 0.14 3E-06 51.2 10.7 75 270-345 190-265 (679)
378 PF03969 AFG1_ATPase: AFG1-lik 95.5 0.41 9E-06 43.7 12.9 109 70-217 62-171 (362)
379 KOG0058 Peptide exporter, ABC 95.4 0.075 1.6E-06 51.5 8.3 139 67-212 491-660 (716)
380 PF03237 Terminase_6: Terminas 95.4 0.42 9.1E-06 44.0 13.3 146 74-229 1-154 (384)
381 KOG2036 Predicted P-loop ATPas 95.4 2.6 5.7E-05 41.1 17.9 63 57-121 255-324 (1011)
382 TIGR00595 priA primosomal prot 95.4 0.13 2.9E-06 49.2 10.0 75 269-344 24-99 (505)
383 PRK14873 primosome assembly pr 95.3 0.15 3.3E-06 50.4 10.5 90 256-346 172-265 (665)
384 PRK03992 proteasome-activating 95.3 0.042 9E-07 50.9 6.3 55 32-89 127-184 (389)
385 KOG0729 26S proteasome regulat 95.3 0.53 1.2E-05 40.0 12.0 81 29-117 170-251 (435)
386 PRK06620 hypothetical protein; 95.3 0.037 8.1E-07 46.5 5.4 18 71-88 45-62 (214)
387 cd00984 DnaB_C DnaB helicase C 95.3 0.17 3.8E-06 43.5 9.8 40 68-109 11-50 (242)
388 PF01695 IstB_IS21: IstB-like 95.2 0.033 7.1E-07 45.3 4.7 45 68-116 45-89 (178)
389 PRK07940 DNA polymerase III su 95.2 0.15 3.2E-06 47.2 9.4 47 171-219 115-161 (394)
390 COG2804 PulE Type II secretory 95.2 0.048 1E-06 50.8 6.1 41 57-98 243-285 (500)
391 TIGR02655 circ_KaiC circadian 95.2 0.077 1.7E-06 50.7 7.8 52 70-125 263-314 (484)
392 COG0593 DnaA ATPase involved i 95.2 0.11 2.4E-06 47.7 8.3 108 70-218 113-222 (408)
393 TIGR01243 CDC48 AAA family ATP 95.2 0.065 1.4E-06 54.2 7.6 54 33-89 450-506 (733)
394 TIGR02928 orc1/cdc6 family rep 95.1 0.11 2.4E-06 47.8 8.5 21 71-91 41-61 (365)
395 PRK07133 DNA polymerase III su 95.1 0.13 2.8E-06 50.9 9.1 21 72-92 42-62 (725)
396 PRK14953 DNA polymerase III su 95.1 0.2 4.2E-06 47.8 10.1 20 73-92 41-60 (486)
397 TIGR02688 conserved hypothetic 95.1 0.12 2.7E-06 47.4 8.3 54 40-93 172-232 (449)
398 KOG0733 Nuclear AAA ATPase (VC 95.1 0.14 3.1E-06 48.7 8.8 52 32-86 186-239 (802)
399 TIGR00643 recG ATP-dependent D 95.1 0.093 2E-06 52.0 8.2 76 269-344 283-363 (630)
400 PRK11034 clpA ATP-dependent Cl 95.0 0.2 4.3E-06 50.4 10.4 22 70-91 207-228 (758)
401 TIGR03877 thermo_KaiC_1 KaiC d 95.0 0.049 1.1E-06 46.7 5.4 53 69-125 20-72 (237)
402 COG4962 CpaF Flp pilus assembl 95.0 0.073 1.6E-06 47.1 6.4 61 52-116 154-215 (355)
403 TIGR02525 plasmid_TraJ plasmid 95.0 0.069 1.5E-06 48.7 6.6 38 69-107 148-185 (372)
404 PRK10416 signal recognition pa 95.0 0.48 1E-05 42.5 11.8 130 72-225 116-255 (318)
405 PF01443 Viral_helicase1: Vira 95.0 0.033 7.1E-07 47.7 4.3 19 73-91 1-19 (234)
406 COG0541 Ffh Signal recognition 94.9 0.35 7.7E-06 44.3 10.7 130 73-225 103-235 (451)
407 PHA00012 I assembly protein 94.9 0.53 1.2E-05 41.6 11.3 26 73-98 4-29 (361)
408 cd00544 CobU Adenosylcobinamid 94.9 0.2 4.4E-06 40.2 8.4 45 73-123 2-46 (169)
409 PRK04841 transcriptional regul 94.9 0.25 5.4E-06 51.6 11.3 43 173-215 121-163 (903)
410 TIGR00767 rho transcription te 94.9 0.12 2.6E-06 47.3 7.6 31 67-98 165-195 (415)
411 COG3972 Superfamily I DNA and 94.9 0.22 4.7E-06 46.2 9.1 71 53-125 160-230 (660)
412 TIGR00416 sms DNA repair prote 94.9 0.15 3.3E-06 48.1 8.6 51 70-124 94-144 (454)
413 PRK06305 DNA polymerase III su 94.9 0.2 4.3E-06 47.3 9.4 25 71-95 40-64 (451)
414 PRK08058 DNA polymerase III su 94.9 0.22 4.7E-06 45.0 9.4 41 171-212 108-148 (329)
415 TIGR01243 CDC48 AAA family ATP 94.8 0.068 1.5E-06 54.1 6.8 54 32-88 174-230 (733)
416 COG1132 MdlB ABC-type multidru 94.8 0.091 2E-06 51.6 7.5 42 170-211 480-521 (567)
417 CHL00176 ftsH cell division pr 94.8 0.12 2.5E-06 51.0 8.0 57 30-89 177-235 (638)
418 COG1484 DnaC DNA replication p 94.8 0.065 1.4E-06 46.3 5.6 49 69-121 104-152 (254)
419 KOG0737 AAA+-type ATPase [Post 94.8 0.14 3.1E-06 45.6 7.6 62 27-88 83-145 (386)
420 PF02572 CobA_CobO_BtuR: ATP:c 94.8 0.41 8.8E-06 38.4 9.6 140 73-223 6-148 (172)
421 PRK09376 rho transcription ter 94.7 0.083 1.8E-06 48.0 6.2 55 68-124 167-221 (416)
422 TIGR03346 chaperone_ClpB ATP-d 94.7 0.38 8.2E-06 49.6 11.8 21 71-91 195-215 (852)
423 PRK14971 DNA polymerase III su 94.7 0.21 4.5E-06 49.1 9.4 41 170-211 118-158 (614)
424 PHA03333 putative ATPase subun 94.7 0.32 7E-06 47.4 10.3 57 68-126 185-241 (752)
425 TIGR02524 dot_icm_DotB Dot/Icm 94.7 0.089 1.9E-06 47.9 6.4 27 69-96 133-159 (358)
426 TIGR01242 26Sp45 26S proteasom 94.6 0.11 2.5E-06 47.7 7.2 55 32-89 118-175 (364)
427 PRK13851 type IV secretion sys 94.6 0.065 1.4E-06 48.4 5.3 43 67-113 159-201 (344)
428 TIGR02868 CydC thiol reductant 94.6 0.1 2.3E-06 50.7 7.1 43 169-211 484-526 (529)
429 COG1110 Reverse gyrase [DNA re 94.6 0.14 3.1E-06 51.5 7.9 73 257-329 112-190 (1187)
430 KOG0726 26S proteasome regulat 94.5 0.42 9E-06 41.3 9.3 65 19-86 168-235 (440)
431 TIGR00580 mfd transcription-re 94.4 0.18 4E-06 51.8 8.6 76 269-344 499-579 (926)
432 TIGR03345 VI_ClpV1 type VI sec 94.4 0.38 8.3E-06 49.3 10.8 37 55-91 187-229 (852)
433 cd01130 VirB11-like_ATPase Typ 94.2 0.17 3.7E-06 41.5 6.7 39 56-95 10-49 (186)
434 PRK10865 protein disaggregatio 94.2 0.28 6E-06 50.4 9.4 22 71-92 200-221 (857)
435 COG2109 BtuR ATP:corrinoid ade 94.2 0.43 9.3E-06 38.4 8.3 140 73-223 31-174 (198)
436 COG1198 PriA Primosomal protei 94.2 0.19 4.2E-06 49.7 7.8 88 256-344 229-319 (730)
437 KOG0731 AAA+-type ATPase conta 94.1 0.41 9E-06 47.3 9.8 56 28-86 303-360 (774)
438 PF01637 Arch_ATPase: Archaeal 94.1 0.13 2.8E-06 43.8 6.0 19 70-88 20-38 (234)
439 KOG0741 AAA+-type ATPase [Post 94.1 0.54 1.2E-05 44.2 9.9 68 38-110 494-573 (744)
440 PRK13531 regulatory ATPase Rav 94.0 0.23 5E-06 46.7 7.6 29 61-89 30-58 (498)
441 cd01125 repA Hexameric Replica 94.0 0.28 6.1E-06 42.1 7.8 37 73-109 4-49 (239)
442 COG0210 UvrD Superfamily I DNA 94.0 0.15 3.3E-06 51.0 7.0 70 55-126 2-72 (655)
443 PRK07399 DNA polymerase III su 94.0 0.59 1.3E-05 41.8 10.0 51 161-213 111-162 (314)
444 PF10593 Z1: Z1 domain; Inter 93.9 0.2 4.4E-06 42.7 6.6 104 286-395 103-214 (239)
445 KOG0730 AAA+-type ATPase [Post 93.9 0.35 7.5E-06 46.6 8.5 56 29-87 427-485 (693)
446 PRK04328 hypothetical protein; 93.9 0.13 2.8E-06 44.5 5.4 53 69-125 22-74 (249)
447 COG1618 Predicted nucleotide k 93.8 0.18 3.8E-06 39.5 5.4 117 71-200 6-129 (179)
448 PRK13900 type IV secretion sys 93.8 0.2 4.3E-06 45.2 6.7 43 67-113 157-199 (332)
449 KOG2170 ATPase of the AAA+ sup 93.8 0.22 4.9E-06 43.1 6.5 31 74-104 114-144 (344)
450 PRK14970 DNA polymerase III su 93.8 0.6 1.3E-05 43.0 10.0 20 71-90 40-59 (367)
451 KOG0701 dsRNA-specific nucleas 93.7 0.047 1E-06 58.0 2.9 93 272-364 294-398 (1606)
452 PHA00350 putative assembly pro 93.7 0.43 9.4E-06 43.8 8.7 26 73-98 4-30 (399)
453 PRK09087 hypothetical protein; 93.7 0.24 5.1E-06 42.1 6.6 20 70-89 44-63 (226)
454 COG0467 RAD55 RecA-superfamily 93.7 0.15 3.2E-06 44.5 5.6 54 69-126 22-75 (260)
455 KOG0298 DEAD box-containing he 93.7 0.092 2E-06 53.9 4.7 96 271-370 1222-1317(1394)
456 COG1219 ClpX ATP-dependent pro 93.7 0.051 1.1E-06 47.3 2.5 58 32-89 43-116 (408)
457 cd01129 PulE-GspE PulE/GspE Th 93.6 0.19 4.1E-06 43.8 6.1 40 47-89 58-99 (264)
458 KOG0740 AAA+-type ATPase [Post 93.6 0.33 7.2E-06 44.7 7.7 79 173-268 245-336 (428)
459 KOG0744 AAA+-type ATPase [Post 93.6 0.57 1.2E-05 41.2 8.6 66 71-137 178-257 (423)
460 PRK10689 transcription-repair 93.5 0.34 7.3E-06 51.2 8.7 76 269-344 648-728 (1147)
461 cd01128 rho_factor Transcripti 93.5 0.18 3.9E-06 43.4 5.6 31 66-97 12-42 (249)
462 CHL00095 clpC Clp protease ATP 93.4 0.62 1.3E-05 47.9 10.3 22 71-92 201-222 (821)
463 KOG1513 Nuclear helicase MOP-3 93.4 0.11 2.5E-06 50.6 4.6 78 313-390 850-939 (1300)
464 COG5008 PilU Tfp pilus assembl 93.3 0.08 1.7E-06 44.9 3.1 18 71-88 128-145 (375)
465 COG1485 Predicted ATPase [Gene 93.3 1.3 2.8E-05 39.6 10.6 108 71-217 66-174 (367)
466 PF12846 AAA_10: AAA-like doma 93.2 0.12 2.6E-06 46.0 4.5 39 71-112 2-40 (304)
467 TIGR03600 phage_DnaB phage rep 93.1 0.75 1.6E-05 43.3 9.7 45 62-108 186-230 (421)
468 COG1074 RecB ATP-dependent exo 93.1 0.16 3.5E-06 53.8 5.7 56 69-124 15-72 (1139)
469 PRK10436 hypothetical protein; 93.1 0.21 4.6E-06 47.1 5.9 38 57-95 203-242 (462)
470 TIGR03878 thermo_KaiC_2 KaiC d 93.1 0.13 2.8E-06 44.7 4.2 38 69-109 35-72 (259)
471 COG0464 SpoVK ATPases of the A 93.0 0.69 1.5E-05 44.6 9.5 57 30-89 236-295 (494)
472 PF03796 DnaB_C: DnaB-like hel 93.0 0.67 1.4E-05 40.3 8.7 40 68-109 17-56 (259)
473 PF14532 Sigma54_activ_2: Sigm 93.0 0.41 8.8E-06 37.1 6.6 44 173-217 69-113 (138)
474 KOG2228 Origin recognition com 93.0 1.8 3.9E-05 38.4 10.8 55 160-214 122-181 (408)
475 TIGR02533 type_II_gspE general 92.9 0.24 5.2E-06 47.2 6.1 44 48-95 221-266 (486)
476 PRK06904 replicative DNA helic 92.9 1.3 2.8E-05 42.2 10.8 116 66-186 217-347 (472)
477 PRK07414 cob(I)yrinic acid a,c 92.8 3.2 6.8E-05 33.5 11.3 134 72-222 23-166 (178)
478 PLN03187 meiotic recombination 92.8 0.52 1.1E-05 42.6 7.8 29 26-54 25-53 (344)
479 COG1066 Sms Predicted ATP-depe 92.8 1.1 2.4E-05 40.8 9.5 87 71-188 94-183 (456)
480 PRK05564 DNA polymerase III su 92.8 0.92 2E-05 40.8 9.4 40 171-211 91-130 (313)
481 COG2874 FlaH Predicted ATPases 92.7 0.49 1.1E-05 39.0 6.6 46 170-215 120-168 (235)
482 KOG0736 Peroxisome assembly fa 92.7 0.95 2.1E-05 44.6 9.5 54 31-87 667-722 (953)
483 PHA03372 DNA packaging termina 92.6 0.58 1.3E-05 44.9 7.9 125 71-214 203-337 (668)
484 TIGR03819 heli_sec_ATPase heli 92.5 0.36 7.8E-06 43.7 6.4 63 45-113 154-217 (340)
485 TIGR02784 addA_alphas double-s 92.4 0.31 6.7E-06 52.1 6.8 57 69-125 9-65 (1141)
486 PF00931 NB-ARC: NB-ARC domain 92.4 0.33 7.1E-06 43.0 6.0 23 71-93 20-42 (287)
487 PF00437 T2SE: Type II/IV secr 92.4 0.21 4.6E-06 43.8 4.8 43 68-113 125-167 (270)
488 PRK05917 DNA polymerase III su 92.4 1.7 3.7E-05 38.2 10.2 43 171-214 93-135 (290)
489 KOG1807 Helicases [Replication 92.3 0.23 5.1E-06 48.4 5.1 68 56-123 379-449 (1025)
490 PRK08506 replicative DNA helic 92.3 2 4.2E-05 41.1 11.3 114 67-186 189-315 (472)
491 PRK12608 transcription termina 92.2 0.98 2.1E-05 41.1 8.7 39 59-98 119-160 (380)
492 TIGR03880 KaiC_arch_3 KaiC dom 92.2 0.31 6.6E-06 41.4 5.3 52 70-125 16-67 (224)
493 KOG0344 ATP-dependent RNA heli 92.1 6.7 0.00015 37.5 14.0 102 74-184 361-467 (593)
494 PF06309 Torsin: Torsin; Inte 92.0 0.62 1.4E-05 35.0 6.0 50 74-123 57-111 (127)
495 PF03266 NTPase_1: NTPase; In 92.0 0.26 5.7E-06 39.6 4.3 28 172-199 94-123 (168)
496 PF13481 AAA_25: AAA domain; P 91.9 0.4 8.7E-06 39.5 5.7 56 69-125 31-93 (193)
497 PRK11174 cysteine/glutathione 91.9 0.41 8.9E-06 47.3 6.6 46 169-214 499-544 (588)
498 TIGR02655 circ_KaiC circadian 91.9 0.31 6.6E-06 46.7 5.4 54 69-126 20-74 (484)
499 COG4555 NatA ABC-type Na+ tran 91.8 1.3 2.8E-05 36.3 7.9 55 171-225 149-203 (245)
500 COG0465 HflB ATP-dependent Zn 91.8 0.81 1.8E-05 44.2 8.0 55 30-87 144-200 (596)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-69 Score=438.78 Aligned_cols=396 Identities=79% Similarity=1.206 Sum_probs=381.3
Q ss_pred HcCCCCCCCCCcceeeccCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhH
Q 015595 9 RRGGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~ 88 (404)
++......+.+..+.+++...+..++|+++++.+++.+.+.+.||..|...|+++++++++|++++.++..|+|||.++.
T Consensus 3 ~r~~~~~~~~~~~~feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~s 82 (400)
T KOG0328|consen 3 ARELFTMEDMDTVEFETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFS 82 (400)
T ss_pred hhhhcccccccceeEeeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEE
Confidence 34456668889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHc
Q 015595 89 LTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR 168 (404)
Q Consensus 89 ~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~ 168 (404)
..++..+.-+.+...+++++||++|+.|..+.+..++...++.+..+.||.+..+.++.+..+.+++.+||+++++++++
T Consensus 83 i~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr 162 (400)
T KOG0328|consen 83 ISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR 162 (400)
T ss_pred eeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh
Confidence 99998888888888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC--cccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceE
Q 015595 169 KTLR--TRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQ 246 (404)
Q Consensus 169 ~~~~--~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (404)
..+. .+.++|+||++.+++.++..++..+++++|+..|++++|||+|.++.++...+..+|+.+.....+....++.+
T Consensus 163 ~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKq 242 (400)
T KOG0328|consen 163 RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQ 242 (400)
T ss_pred ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhh
Confidence 7654 56888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 015595 247 FFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT 326 (404)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 326 (404)
++...+.+++|.+.|+.+.....-..++||||++..++++.+.+++.++.+..+||+|..++|+.+.+.|+.|+.+||++
T Consensus 243 f~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLit 322 (400)
T KOG0328|consen 243 FFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLIT 322 (400)
T ss_pred heeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccccC
Q 015595 327 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 404 (404)
Q Consensus 327 t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (404)
|++.++|+|+|.++.||+||+|.+...|+||+||.||.|+.|.++.|+..+|...+..+++++....+++|+++.|++
T Consensus 323 TDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~i 400 (400)
T KOG0328|consen 323 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADLI 400 (400)
T ss_pred echhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-64 Score=423.78 Aligned_cols=371 Identities=32% Similarity=0.562 Sum_probs=353.3
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEE
Q 015595 28 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (404)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (404)
..+...+|.++++++.+.+++...++..|++.|++++|.++.|+++|..|.||||||.++++|+++.+...+..++++|+
T Consensus 56 ~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVL 135 (476)
T KOG0330|consen 56 TDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVL 135 (476)
T ss_pred hhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEe
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred cccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEecccc
Q 015595 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDESDE 184 (404)
Q Consensus 108 ~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE~h~ 184 (404)
+|+++|+.|..++++.++...++.+..+.||.+...+...+...++|+|+||+++.+++.+. .+..++++|+||||+
T Consensus 136 tPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADr 215 (476)
T KOG0330|consen 136 TPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADR 215 (476)
T ss_pred cCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHh
Confidence 99999999999999999999999999999999998888888899999999999999999864 456678999999999
Q ss_pred ccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhh
Q 015595 185 MLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 264 (404)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (404)
+++..|...+..+++.+|...|.+++|||++..+..+....+.+|..+.........+.+.+.|..++... |...|..+
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~-K~~yLV~l 294 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD-KDTYLVYL 294 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccc-cchhHHHH
Confidence 99999999999999999999999999999999999999888999999999888888899999999988876 88999999
Q ss_pred hhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE
Q 015595 265 YDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN 344 (404)
Q Consensus 265 l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~ 344 (404)
++...+..+||||++...+++++-.|+..|+.+..+||.|++..|.-.++.|++|..+|||||+++++|+|+|.+++||+
T Consensus 295 l~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN 374 (476)
T KOG0330|consen 295 LNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN 374 (476)
T ss_pred HHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcc
Q 015595 345 YDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMN 399 (404)
Q Consensus 345 ~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (404)
||.|.+..+|+||+||.+|.|+.|.++.+++..|+..+.+++..++....+.+..
T Consensus 375 yDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~ 429 (476)
T KOG0330|consen 375 YDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVD 429 (476)
T ss_pred cCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcc
Confidence 9999999999999999999999999999999999999999999999998875543
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-62 Score=441.98 Aligned_cols=368 Identities=36% Similarity=0.633 Sum_probs=341.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc------CCCceeEEEE
Q 015595 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------SSREVQALIL 107 (404)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~------~~~~~~~lil 107 (404)
.|.++++++....+++..||..|+|.|...|+.++.|++++..|.||||||++|+++++.++.. ...++++|++
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 6888999999999999999999999999999999999999999999999999999999988865 3457889999
Q ss_pred cccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccC--CCcccceEEeccccc
Q 015595 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLDESDEM 185 (404)
Q Consensus 108 ~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~~vIiDE~h~~ 185 (404)
+||++|+.|....+.+++..+.+...+++||.....+...+.++.+|+|+||+++.++++... +..+.++|+||||+|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999874 558899999999999
Q ss_pred cccCcHHHHHHHHhhC-CCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCc--cccCCceEEEEEecCchhHHHHHH
Q 015595 186 LSRGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE--LTLEGIKQFFVAVEREEWKFDTLC 262 (404)
Q Consensus 186 ~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 262 (404)
++.+|...+..++..+ ++..|.++.|||++.+++.+...++.+|..+.+.... ....++.+....++ ...|...|.
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~ 330 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLG 330 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHH
Confidence 9999999999999999 4455899999999999999999999999888877553 44567888888888 444777777
Q ss_pred hhhhcC---CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCC
Q 015595 263 DLYDTL---TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV 339 (404)
Q Consensus 263 ~~l~~~---~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~ 339 (404)
.++... .++|+||||++++.|+++.+.++..++.+..+||+.++.+|+.+++.|++|+..|||||+++++|+|+|++
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 777665 46799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccc
Q 015595 340 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVAD 402 (404)
Q Consensus 340 ~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
++||+||+|.++.+|+||+||.||.|+.|.++.|++..+......+.+.+++....+|..+.+
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~ 473 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLE 473 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987754
No 4
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.8e-61 Score=444.96 Aligned_cols=371 Identities=31% Similarity=0.464 Sum_probs=329.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC-------CCcee
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-------SREVQ 103 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~-------~~~~~ 103 (404)
+..+|+++++++++.+++...||..|+++|.++++.+++|++++++||||||||++|++++++.+... ..+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 34679999999999999999999999999999999999999999999999999999999998877432 23468
Q ss_pred EEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEec
Q 015595 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDE 181 (404)
Q Consensus 104 ~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE 181 (404)
+||++|+++|+.|+.+.+..+....++.+..++||.........+..+++|+|+||+++.+++... .+..++++|+||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 999999999999999999999888899999999998877777777778999999999999998765 467789999999
Q ss_pred cccccccCcHHHHHHHHhhCCC--CceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHH
Q 015595 182 SDEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFD 259 (404)
Q Consensus 182 ~h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (404)
+|++.+.++...+..+++.++. ..+.+++|||++.....+....+.+|..+...........+.+.+... ....+..
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~~~k~~ 244 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SNEEKMR 244 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CHHHHHH
Confidence 9999999999999999988874 456789999999998888888888888777665555555555554443 3345888
Q ss_pred HHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCC
Q 015595 260 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV 339 (404)
Q Consensus 260 ~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~ 339 (404)
.+..++......++||||+++..++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 245 ~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 245 LLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred HHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 88888887778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccc
Q 015595 340 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVAD 402 (404)
Q Consensus 340 ~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
++||++++|.+...|+||+||+||.|+.|.+++|+.+.+...+..+++++...++..+....+
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 387 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYDSDA 387 (423)
T ss_pred CEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCChhh
Confidence 999999999999999999999999999999999999999999999999999887766655443
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1e-60 Score=453.12 Aligned_cols=377 Identities=32% Similarity=0.527 Sum_probs=334.9
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC-----CC
Q 015595 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----SR 100 (404)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~-----~~ 100 (404)
...+.+..+|+++++++++.++|...||..|+++|.++|+.+++|+++++++|||||||++++++++..+... ..
T Consensus 123 ~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~ 202 (545)
T PTZ00110 123 ENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGD 202 (545)
T ss_pred CCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCC
Confidence 4456788899999999999999999999999999999999999999999999999999999999988766432 23
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceE
Q 015595 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKL 178 (404)
Q Consensus 101 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vI 178 (404)
++.+||++||++|+.|+.+.+.++....++.+..++|+.....+...+..+++|+|+||+++.+++... .+..++++|
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lV 282 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLV 282 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 568999999999999999999999888888999999998887777788888999999999999998865 467889999
Q ss_pred EeccccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccC-CCeEEEecCCc-cccCCceEEEEEecCchh
Q 015595 179 LDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMT-DPVKILVKRDE-LTLEGIKQFFVAVEREEW 256 (404)
Q Consensus 179 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 256 (404)
+||||++.+..+...+..++..+++..|++++|||++.+...+...++. .+..+...... .....+.+.+..+... .
T Consensus 283 iDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~-~ 361 (545)
T PTZ00110 283 LDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEH-E 361 (545)
T ss_pred eehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEech-h
Confidence 9999999999999999999999999999999999999998888877765 46665554333 2234566666555543 3
Q ss_pred HHHHHHhhhhcC--CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCC
Q 015595 257 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 334 (404)
Q Consensus 257 ~~~~l~~~l~~~--~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gi 334 (404)
+...+..++... ...++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+..|||||+++++|+
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 677777777654 467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcccccc
Q 015595 335 DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 403 (404)
Q Consensus 335 d~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
|+|++++||+++.|.+..+|+||+||+||.|+.|.+++|+++++...+..+.+.++....++|.+|.++
T Consensus 442 Di~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~ 510 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKL 510 (545)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988654
No 6
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.4e-59 Score=439.39 Aligned_cols=362 Identities=37% Similarity=0.617 Sum_probs=327.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCC------CceeEEEE
Q 015595 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS------REVQALIL 107 (404)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~------~~~~~lil 107 (404)
+|+++++++++.+++.+.||..|+++|.++++.+++++++++++|||||||+++++++++.+.... ...++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999998875432 23479999
Q ss_pred cccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccc
Q 015595 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEM 185 (404)
Q Consensus 108 ~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~ 185 (404)
+|+++|+.|+.+.++.+....++.+..+.|+.....+...+..+++|+|+||+++.+++... .+..++++|+||+|.+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999888889999999998887777777788999999999999988765 4678899999999999
Q ss_pred cccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhh
Q 015595 186 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 265 (404)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 265 (404)
.+..+...+..++..++...|.+++|||++++...+...++.++..+...........+.+.+...+.. .+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKK-RKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHH-HHHHHHHHHH
Confidence 999999999999999999999999999999998888888888888777666555556666666655543 3677777888
Q ss_pred hcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEc
Q 015595 266 DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINY 345 (404)
Q Consensus 266 ~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~ 345 (404)
......++||||+++..++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEe
Confidence 77777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccC
Q 015595 346 DLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEM 396 (404)
Q Consensus 346 ~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (404)
++|.+..+|+||+||+||.|..|.+++|+..++...+..+++.++..++..
T Consensus 321 ~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 (456)
T ss_pred CCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999999887543
No 7
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.3e-59 Score=440.12 Aligned_cols=362 Identities=37% Similarity=0.638 Sum_probs=331.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
.+|.++++++.+.+++.+.||..|+|+|.++++.+++|++++++||||||||+++++++++.+.......++||++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 46999999999999999999999999999999999999999999999999999999999998876655668999999999
Q ss_pred HHHHHHHHHHHHcccc-CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccC
Q 015595 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRG 189 (404)
Q Consensus 113 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~ 189 (404)
|+.|+.+.++.+.... ++.+..++|+.+...+...+..+++|+|+||+++.+++.+. .+..++++|+||+|++.+.+
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 9999999999887654 68888999999888888888888999999999999998875 46788999999999999999
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCC
Q 015595 190 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 269 (404)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 269 (404)
+...+..++..++...|++++|||+++....+...++.+|..+...... ....+.+.+...+... +...+..++....
T Consensus 164 ~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~ 241 (460)
T PRK11776 164 FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDE-RLPALQRLLLHHQ 241 (460)
T ss_pred cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHH-HHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999988888887765544 3445777777666655 8889999998888
Q ss_pred CCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCC
Q 015595 270 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPN 349 (404)
Q Consensus 270 ~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~ 349 (404)
+.++||||+++..++.+++.|...++.+..+||++++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~ 321 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR 321 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccC
Q 015595 350 NRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEM 396 (404)
Q Consensus 350 s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (404)
+...|+||+||+||.|+.|.+++++.+++...+..+++.++..+...
T Consensus 322 ~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~ 368 (460)
T PRK11776 322 DPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWE 368 (460)
T ss_pred CHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCcee
Confidence 99999999999999999999999999999999999999988766543
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.1e-59 Score=443.08 Aligned_cols=374 Identities=30% Similarity=0.536 Sum_probs=331.1
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc-------CC
Q 015595 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-------SS 99 (404)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~-------~~ 99 (404)
..++++..|+++++++.+.+.|...||..|+|+|.++++.++.|+++++++|||||||++|+++++..+.. ..
T Consensus 115 ~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~ 194 (518)
T PLN00206 115 AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQ 194 (518)
T ss_pred CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999876632 22
Q ss_pred CceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccce
Q 015595 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIK 177 (404)
Q Consensus 100 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~v 177 (404)
.++++||++|+++|+.|+.+.++.+....++.+..+.||.....+...+..+++|+|+||+++..++.+. .+..++++
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~l 274 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVL 274 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEE
Confidence 4578999999999999999999998888888888889988877777777788999999999999998875 46778999
Q ss_pred EEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhH
Q 015595 178 LLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK 257 (404)
Q Consensus 178 IiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (404)
|+||+|.+.+.++...+..++..++ ..|++++|||+++.+..+...+..++..+...........+.+....+.... +
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~-k 352 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQ-K 352 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchh-H
Confidence 9999999999999999988888875 6799999999999988888888888877776655544455666666555443 6
Q ss_pred HHHHHhhhhcCC--CCeEEEEecchhhHHHHHHHHhh-CCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCC
Q 015595 258 FDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMRG-YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 334 (404)
Q Consensus 258 ~~~l~~~l~~~~--~~k~lIf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gi 334 (404)
...+..++.... ..++||||+++..++.+++.|.. .++.+..+||+++..+|..+++.|++|+.+|||||+++++|+
T Consensus 353 ~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGi 432 (518)
T PLN00206 353 KQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGV 432 (518)
T ss_pred HHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccC
Confidence 666667766433 35799999999999999999975 588999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccc
Q 015595 335 DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVAD 402 (404)
Q Consensus 335 d~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
|+|++++||++++|.+..+|+||+||+||.|..|.+++|+++++...+..+.+.++....++|.++.+
T Consensus 433 Dip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 500 (518)
T PLN00206 433 DLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELAN 500 (518)
T ss_pred CcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988754
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-59 Score=438.35 Aligned_cols=362 Identities=44% Similarity=0.727 Sum_probs=339.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc--CCCceeEEEEccc
Q 015595 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT--SSREVQALILSPT 110 (404)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~--~~~~~~~lil~p~ 110 (404)
..|.++++++.+.+++.+.||..|+|+|..++|.++.|++++..|+||||||.++.+++++.+.. ......+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999873 2222229999999
Q ss_pred HHHHHHHHHHHHHHcccc-CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccc
Q 015595 111 RELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLS 187 (404)
Q Consensus 111 ~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~ 187 (404)
++|+.|..+.+.++.... ++.+..++||.+...+...+..+++|+|+||+++.+++.+. .+..+.++|+|||+++++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 999999999999999888 79999999999988888888888999999999999999987 567789999999999999
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCcc--ccCCceEEEEEecCchhHHHHHHhhh
Q 015595 188 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL--TLEGIKQFFVAVEREEWKFDTLCDLY 265 (404)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l 265 (404)
.+|...+..++..++.+.|++++|||++..+..+...++.+|..+....... ....+.+++..+.....|...|..++
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll 268 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL 268 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888775555 78889999999987767999999999
Q ss_pred hcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEc
Q 015595 266 DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINY 345 (404)
Q Consensus 266 ~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~ 345 (404)
......++||||+++..++.++..|...|+.+..+||++++.+|.+.++.|++|+.+|||||+++++|+|+|++++||+|
T Consensus 269 ~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Viny 348 (513)
T COG0513 269 KDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINY 348 (513)
T ss_pred hcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEc
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhhhccccCCCCCceeEEEEeccC-cHHHHHHHHHHHccccc
Q 015595 346 DLPNNRELYIHRIGRSGRFGRKGVAINFVKND-DIKILRDIEQYYSTQID 394 (404)
Q Consensus 346 ~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 394 (404)
|+|.+...|+||+||+||.|+.|.++.|+.+. +...+..+++.++...+
T Consensus 349 D~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 349 DLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred cCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999986 99999999999887744
No 10
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.8e-59 Score=446.74 Aligned_cols=367 Identities=35% Similarity=0.596 Sum_probs=333.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccH
Q 015595 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (404)
..+|.++++++.+.++|.++||.+|+|+|.++++.++++++++++||||||||+++.++++..+......+++||++|++
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 35699999999999999999999999999999999999999999999999999999999998887666667899999999
Q ss_pred HHHHHHHHHHHHHcccc-CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEecccccccc
Q 015595 112 ELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSR 188 (404)
Q Consensus 112 ~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~ 188 (404)
+|+.|+.+.+.++.... ++.+..++|+.....+...+..+++|+|+||+++.+++.+. .+..+.++||||+|+++..
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~ 164 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM 164 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc
Confidence 99999999999886654 78888999998887777778888999999999999998875 4678899999999999999
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcC
Q 015595 189 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 268 (404)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 268 (404)
.+...+..++..++...|++++|||+++.+..+...++.++..+.+.........+.+.+...... .+...+..++...
T Consensus 165 gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~-~k~~~L~~~L~~~ 243 (629)
T PRK11634 165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM-RKNEALVRFLEAE 243 (629)
T ss_pred ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechh-hHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999888887766666666677766655544 3788888888877
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP 348 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p 348 (404)
...++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P 323 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIP 323 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcc
Q 015595 349 NNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMN 399 (404)
Q Consensus 349 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (404)
.+...|+||+||+||.|+.|.+++++.+.+...++.+++.++..+.+++..
T Consensus 324 ~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p 374 (629)
T PRK11634 324 MDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELP 374 (629)
T ss_pred CCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCC
Confidence 999999999999999999999999999999999999999999888776544
No 11
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-59 Score=444.13 Aligned_cols=364 Identities=34% Similarity=0.543 Sum_probs=326.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC-------CCceeEE
Q 015595 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-------SREVQAL 105 (404)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~-------~~~~~~l 105 (404)
..|+++++++++.++|.+.||..|+++|.++|+.+++|+++++++|||||||++|++++++.+... ...+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 469999999999999999999999999999999999999999999999999999999999877432 1246899
Q ss_pred EEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEecc
Q 015595 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDES 182 (404)
Q Consensus 106 il~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE~ 182 (404)
|++|+++|+.|+++.+.++....++.+..++|+.....+...+..+++|+|+||++|.+++... .+..++++||||+
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999988899999999999887777777778999999999999988764 3567789999999
Q ss_pred ccccccCcHHHHHHHHhhCCC--CceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHH
Q 015595 183 DEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDT 260 (404)
Q Consensus 183 h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (404)
|.+.+..+...+..++..++. ..|++++|||++..+..+...++..+..+...........+.+.+..... ..+...
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~k~~~ 247 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPAD-EEKQTL 247 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCH-HHHHHH
Confidence 999999999999999998876 67999999999999889888888888777766655555666666555443 447888
Q ss_pred HHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCC
Q 015595 261 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVS 340 (404)
Q Consensus 261 l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~ 340 (404)
+..++....+.++||||+++..++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 248 L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~ 327 (572)
T PRK04537 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK 327 (572)
T ss_pred HHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC
Confidence 88888887888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCC
Q 015595 341 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMP 397 (404)
Q Consensus 341 ~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (404)
+||+|+.|.+...|+||+||+||.|+.|.+++|+.+.+...+..++++++.+++..|
T Consensus 328 ~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~ 384 (572)
T PRK04537 328 YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEP 384 (572)
T ss_pred EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccc
Confidence 999999999999999999999999999999999999999999999999988775544
No 12
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3e-58 Score=430.19 Aligned_cols=362 Identities=32% Similarity=0.536 Sum_probs=328.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC----CCceeEEEEcc
Q 015595 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQALILSP 109 (404)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~----~~~~~~lil~p 109 (404)
+|+++++++.+.+++.+.||..|+++|.++++.+++++++++++|||+|||++++++++..+... ....++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999998877432 23468999999
Q ss_pred cHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccC--CCcccceEEeccccccc
Q 015595 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLDESDEMLS 187 (404)
Q Consensus 110 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~~vIiDE~h~~~~ 187 (404)
+++|+.|+.+.+..+....++.+..++|+.........+...++|+|+||+++.+++.... +..++++||||||++.+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 9999999999999998888999999999988877777777788999999999999988764 56689999999999999
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeecch-HHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhh
Q 015595 188 RGFKDQIYDVYRYLPPDLQVVLISATLPH-EILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 266 (404)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 266 (404)
.++...+..+...++...|++++|||++. .+..+...++.++..+...........+.+.+...+....+...+..+++
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 241 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLK 241 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 99999999999888888999999999975 46677777778888877766666666777877777766778899999998
Q ss_pred cCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEcc
Q 015595 267 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD 346 (404)
Q Consensus 267 ~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~ 346 (404)
.....++||||+++++++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEEC
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHcccccc
Q 015595 347 LPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDE 395 (404)
Q Consensus 347 ~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (404)
.|.|...|+||+||+||.|..|.++++++..|...+..+++++..++..
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999998877654
No 13
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.6e-58 Score=427.98 Aligned_cols=372 Identities=68% Similarity=1.092 Sum_probs=337.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEccc
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (404)
...+|+++++++.+.+++...||..|+++|.++++.+++++++++++|||||||++++++++..+.....+.++||++|+
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt 105 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPT 105 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCC
Confidence 45779999999999999999999999999999999999999999999999999999999999888665556789999999
Q ss_pred HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEecccccccc
Q 015595 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSR 188 (404)
Q Consensus 111 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~ 188 (404)
++|+.|+.+.+..++...+..+..+.|+.........+..+++|+|+||+.+..++.+. .++.++++|+||+|++.+.
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~ 185 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSR 185 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhc
Confidence 99999999999998877788888888888777777777778899999999999888764 4778899999999999988
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcC
Q 015595 189 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 268 (404)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 268 (404)
++...+..+++.+++..|++++|||+++........++.++..+..........++.+.+........+...+..++...
T Consensus 186 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (401)
T PTZ00424 186 GFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETL 265 (401)
T ss_pred chHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhc
Confidence 88888899999998899999999999998888888888888877766666666777777777776666778888888877
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP 348 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p 348 (404)
...++||||+++++++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p 345 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLP 345 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccc
Q 015595 349 NNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVAD 402 (404)
Q Consensus 349 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
.|...|+||+||+||.|+.|.++.++++++...+..+++.++..+.++++..-+
T Consensus 346 ~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 399 (401)
T PTZ00424 346 ASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVAD 399 (401)
T ss_pred CCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcchhh
Confidence 999999999999999999999999999999999999999999999998877643
No 14
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-57 Score=426.51 Aligned_cols=368 Identities=32% Similarity=0.552 Sum_probs=325.3
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCC-------ce
Q 015595 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR-------EV 102 (404)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~-------~~ 102 (404)
+....|.++++++.+.++|.+.||..|+++|.++++.+++|+++++.+|||||||++|+++++..+..... ..
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 34457889999999999999999999999999999999999999999999999999999999988765431 46
Q ss_pred eEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh-cCCCeEEeChHHHHHHHHcc--CCCcccceEE
Q 015595 103 QALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK--TLRTRAIKLL 179 (404)
Q Consensus 103 ~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIi 179 (404)
++||++|+++|+.|+.+.++.+....++.+..++|+.........+. ..++|+|+||+++..++.+. .+..++++||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 89999999999999999999998888899988998877665555554 46899999999999888764 4678899999
Q ss_pred eccccccccCcHHHHHHHHhhCCC--CceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhH
Q 015595 180 DESDEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK 257 (404)
Q Consensus 180 DE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (404)
||+|.+.+..+...+..+.+.++. ..|++++|||++.+...+...+..++..+...........+.+.+...... .+
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~k 322 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS-DK 322 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch-hH
Confidence 999999999988889888888754 569999999999998999888888888777666655555666665555544 37
Q ss_pred HHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCC
Q 015595 258 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 337 (404)
Q Consensus 258 ~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p 337 (404)
...+..++......++||||+++++++.+++.|...++.+..+||+++..+|.++++.|++|+.++||||+++++|+|+|
T Consensus 323 ~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 323 YKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 78888888877778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccc-cCCc
Q 015595 338 QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQID-EMPM 398 (404)
Q Consensus 338 ~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 398 (404)
++++||+++.|.|..+|+||+||+||.|+.|.+++|+.++|...+..+++++...+. ++|+
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPP 464 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCc
Confidence 999999999999999999999999999999999999999999999999999988863 4443
No 15
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-58 Score=380.29 Aligned_cols=370 Identities=38% Similarity=0.693 Sum_probs=352.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEccc
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (404)
....|+++.+...+...+.+.||..|.|.|.+++|..+.|++++..|..|+|||-++.+++++.+......-.+++++|+
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPt 162 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPT 162 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeec
Confidence 34568899999999999999999999999999999999999999999999999999999999999888888889999999
Q ss_pred HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEecccccccc
Q 015595 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSR 188 (404)
Q Consensus 111 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~ 188 (404)
++|+.|....+.++++..++.+...+||++..+.+..+.++.+++|+||++++++.++. .++...++|+|||+.++..
T Consensus 163 relALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~ 242 (459)
T KOG0326|consen 163 RELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSV 242 (459)
T ss_pred chhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhch
Confidence 99999999999999999999999999999999999999999999999999999999987 5777888899999999999
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcC
Q 015595 189 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 268 (404)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 268 (404)
.|...+..++..+|+..|+++.|||+|-.+..+..+++.+|+.+... ++..+.++.++|..+.... |...|..++...
T Consensus 243 ~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e~q-KvhCLntLfskL 320 (459)
T KOG0326|consen 243 DFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEERQ-KVHCLNTLFSKL 320 (459)
T ss_pred hhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeechhh-hhhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999988854 4577889999999888776 999999999998
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP 348 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p 348 (404)
.-...+|||||...++.++..+.+.|+.|..+|+.|-+++|..++..|++|..+.||||+.+.+|+|+++++.||.+|.|
T Consensus 321 qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 321 QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccc
Q 015595 349 NNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVAD 402 (404)
Q Consensus 349 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
.+..+|+||+||.||.|..|.++.+++-+|...++.+++.++..++.+|..++.
T Consensus 401 k~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iDk 454 (459)
T KOG0326|consen 401 KNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNIDK 454 (459)
T ss_pred CCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCCc
Confidence 999999999999999999999999999999999999999999999999988864
No 16
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.9e-56 Score=391.15 Aligned_cols=374 Identities=30% Similarity=0.510 Sum_probs=344.6
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC-------
Q 015595 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS------- 98 (404)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~------- 98 (404)
...+.|+.+|++.+++..+++.+...||..|+|.|..+++..+..+++|..+.||||||.+++++++..+...
T Consensus 238 ~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~e 317 (673)
T KOG0333|consen 238 GRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLE 317 (673)
T ss_pred CCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhh
Confidence 3446788999999999999999999999999999999999999999999999999999999999888777433
Q ss_pred --CCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcc
Q 015595 99 --SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTR 174 (404)
Q Consensus 99 --~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~ 174 (404)
..++.++++.||++|++|..++-.+++..+++.++.+.||....++--.+..+|.|+|+||++|...+.+. .+...
T Consensus 318 n~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qc 397 (673)
T KOG0333|consen 318 NNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQC 397 (673)
T ss_pred hcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccC
Confidence 34778999999999999999999999999999999999999988877778889999999999999999886 46677
Q ss_pred cceEEeccccccccCcHHHHHHHHhhCCCC-------------------------ceEEEEeeecchHHHHHHHhccCCC
Q 015595 175 AIKLLDESDEMLSRGFKDQIYDVYRYLPPD-------------------------LQVVLISATLPHEILEMTTKFMTDP 229 (404)
Q Consensus 175 ~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~-------------------------~~~i~~SAT~~~~~~~~~~~~~~~~ 229 (404)
.++|+||++.+.+.+|...+..++..+|.. .|.+.+|||+++.+..+...++.+|
T Consensus 398 tyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~p 477 (673)
T KOG0333|consen 398 TYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRP 477 (673)
T ss_pred ceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCC
Confidence 899999999999999999999999998731 5889999999999999999999999
Q ss_pred eEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHH
Q 015595 230 VKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKER 309 (404)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r 309 (404)
+.+.+.......+.+.|.+..+.... +...|.+++++....++|||+|+++.|+.+++.|.+.++.+..+||+-++++|
T Consensus 478 v~vtig~~gk~~~rveQ~v~m~~ed~-k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQR 556 (673)
T KOG0333|consen 478 VVVTIGSAGKPTPRVEQKVEMVSEDE-KRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQR 556 (673)
T ss_pred eEEEeccCCCCccchheEEEEecchH-HHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHH
Confidence 99999998888899999999888877 79999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHH
Q 015595 310 DAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYY 389 (404)
Q Consensus 310 ~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 389 (404)
+.+++.|++|..+|||||+++++|||+|++++||+|+.+.|..+|.||+||.||.|+.|.++.|+++.|...++.+.+.+
T Consensus 557 e~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l 636 (673)
T KOG0333|consen 557 ENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQAL 636 (673)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cc-ccccCCccc
Q 015595 390 ST-QIDEMPMNV 400 (404)
Q Consensus 390 ~~-~~~~~~~~~ 400 (404)
.+ .-...|+.+
T Consensus 637 ~es~~s~~P~El 648 (673)
T KOG0333|consen 637 RESVKSHCPPEL 648 (673)
T ss_pred HHhhhccCChhh
Confidence 74 444444443
No 17
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.5e-56 Score=388.28 Aligned_cols=355 Identities=29% Similarity=0.492 Sum_probs=321.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC----CCceeEEE
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQALI 106 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~----~~~~~~li 106 (404)
....|++.++++...++++.+||..+++.|+..++.++.|+++++.|-||+|||+++++++.+.+.+. +.+..++|
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 35568889999999999999999999999999999999999999999999999999999999888543 34557999
Q ss_pred EcccHHHHHHHHHHHHHHcccc-CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccC---CCcccceEEecc
Q 015595 107 LSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT---LRTRAIKLLDES 182 (404)
Q Consensus 107 l~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~~vIiDE~ 182 (404)
+|||++|+.|.+.+++++.... +..+..+.||.....+.+.+..+++|+|+||++|.+++++.. +.+.+++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999988888 889999999999888888888899999999999999999863 345578899999
Q ss_pred ccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCC-CeEEEecCC--ccccCCceEEEEEecCchhHHH
Q 015595 183 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTD-PVKILVKRD--ELTLEGIKQFFVAVEREEWKFD 259 (404)
Q Consensus 183 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 259 (404)
|++++.+|...+..+...+|...|.+++|||.++.+.++....+.. +..+.+... .....++.|.|...+... .+.
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~-~f~ 318 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS-RFS 318 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc-hHH
Confidence 9999999999999999999999999999999999999887765554 666655543 344577888888777766 477
Q ss_pred HHHhhhhcCCC-CeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCC
Q 015595 260 TLCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 338 (404)
Q Consensus 260 ~l~~~l~~~~~-~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~ 338 (404)
.+..+++.... .|++|||++......+++.|+...++|..+||+.++..|..+..+|.+.+.-|||||+++++|+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 77777776665 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHH
Q 015595 339 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 386 (404)
Q Consensus 339 ~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 386 (404)
+++||++++|.++.+|+||+||.+|.|..|.+++++.+.+..++++++
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998
No 18
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-56 Score=394.62 Aligned_cols=358 Identities=29% Similarity=0.493 Sum_probs=325.9
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc----CCCceeE
Q 015595 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT----SSREVQA 104 (404)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~----~~~~~~~ 104 (404)
...+..|.++|++....+.|++.+|..++..|+.+++..+.|++++-.|-||||||++++.++++.+.. ...|.-+
T Consensus 65 ~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGa 144 (758)
T KOG0343|consen 65 STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGA 144 (758)
T ss_pred hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCcee
Confidence 345568999999999999999999999999999999999999999999999999999999999988843 2335569
Q ss_pred EEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEec
Q 015595 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDE 181 (404)
Q Consensus 105 lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE 181 (404)
|||.||++|+.|+++.+.+++....++..++.||.....+...+ +..+|+||||++++.++... .-..+.++|+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 99999999999999999999999999999999999876665554 46999999999999999876 345567889999
Q ss_pred cccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCC--ccccCCceEEEEEecCchhHHH
Q 015595 182 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD--ELTLEGIKQFFVAVEREEWKFD 259 (404)
Q Consensus 182 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 259 (404)
|+++++.+|...+..++..+|+..|.+++|||....+.++..-.+.+|..+.+-.. ...+..++++|..++... |++
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~-Ki~ 302 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLED-KID 302 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhh-HHH
Confidence 99999999999999999999999999999999999999999988999988776533 456788899988888776 999
Q ss_pred HHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhC--CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCC
Q 015595 260 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 337 (404)
Q Consensus 260 ~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p 337 (404)
.|..+++.+...++|||++|.+++..+++.|.++ |+.+..+||.|++..|.++..+|......||+||+++++|+|+|
T Consensus 303 ~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 303 MLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 9999999999999999999999999999999886 78899999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCc-HHHHHHHHHH
Q 015595 338 QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDD-IKILRDIEQY 388 (404)
Q Consensus 338 ~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~-~~~~~~~~~~ 388 (404)
.++|||++|+|.++.+|+||+||..|++..|.+++++.+.+ ..++..++..
T Consensus 383 aVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 383 AVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred ccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998 5666655554
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-56 Score=372.08 Aligned_cols=367 Identities=34% Similarity=0.534 Sum_probs=333.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEccc
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (404)
...+|..+|+++|+.+.++++|+.+|+|.|..++|.|++|++++=+|.||||||.++.+++++++...+.+..++|++||
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPT 84 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPT 84 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecch
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc------CCCcccceEEecccc
Q 015595 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK------TLRTRAIKLLDESDE 184 (404)
Q Consensus 111 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~------~~~~~~~vIiDE~h~ 184 (404)
++|+-|..++|...++..++++..+.||.+.-.+...+.+.++++|+||+++..++..+ .++...++|+|||+.
T Consensus 85 rELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADr 164 (442)
T KOG0340|consen 85 RELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADR 164 (442)
T ss_pred HHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhh
Confidence 99999999999999999999999999999988888888889999999999999988765 367788999999999
Q ss_pred ccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCC--CeEEEecCCccccCCceEEEEEecCchhHHHHHH
Q 015595 185 MLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTD--PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLC 262 (404)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 262 (404)
+++..|...+..+.+.+|...|.+++|||+.+....+...-... ...+...........+.+.|..++... +...+.
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~v-kdaYLv 243 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDV-KDAYLV 243 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhh-hHHHHH
Confidence 99999999999999999999999999999998877766554444 333334445555667777777777655 767777
Q ss_pred hhhhcCC---CCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCC
Q 015595 263 DLYDTLT---ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV 339 (404)
Q Consensus 263 ~~l~~~~---~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~ 339 (404)
.+++... .+.++||+++..+|+.++..|+..++.+..+|+.|++.+|-..+.+|+.+..++||||+++++|+|+|.+
T Consensus 244 ~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V 323 (442)
T KOG0340|consen 244 HLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTV 323 (442)
T ss_pred HHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCce
Confidence 7776544 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCc
Q 015595 340 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPM 398 (404)
Q Consensus 340 ~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (404)
+.|++++.|.++.+|+||.||..|.|+.|.++.|+++.|+..+..+++..+.++.+.+.
T Consensus 324 ~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~ 382 (442)
T KOG0340|consen 324 ELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNK 382 (442)
T ss_pred eEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999988774
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-55 Score=381.68 Aligned_cols=351 Identities=32% Similarity=0.544 Sum_probs=314.8
Q ss_pred ccccC--CCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCC----C-ceeEEE
Q 015595 34 SFDAM--GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----R-EVQALI 106 (404)
Q Consensus 34 ~~~~~--~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~----~-~~~~li 106 (404)
.|+++ +|++++.+++...||..++|.|..++|.++.++++++.++||||||+++++|++..+.... + ..-++|
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 46555 4669999999999999999999999999999999999999999999999999999983321 1 235899
Q ss_pred EcccHHHHHHHHHHHHHHccc-cCeeEEEEEcCcchHHHHHHHh-cCCCeEEeChHHHHHHHHcc----CCCcccceEEe
Q 015595 107 LSPTRELATQTEKVILAIGDF-INIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLD 180 (404)
Q Consensus 107 l~p~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~l~~~----~~~~~~~vIiD 180 (404)
|+||++|+.|..+.+..+... .++++.++.||......+..+. .+++|+|+||+++.+++++. .+..+.++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999999887765 6888999999988888777665 56889999999999999883 45588999999
Q ss_pred ccccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCcc--ccCCceEEEEEecCchhHH
Q 015595 181 ESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL--TLEGIKQFFVAVEREEWKF 258 (404)
Q Consensus 181 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 258 (404)
|||++++.+|...++.++..+|+..+.=++|||...+..++....+.+|..+.+..... .+..+..+|..+.... |.
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~e-K~ 243 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE-KL 243 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHH-HH
Confidence 99999999999999999999999999999999999999999999999999988877665 6677777777776665 99
Q ss_pred HHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhC--CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCC
Q 015595 259 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 336 (404)
Q Consensus 259 ~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~ 336 (404)
..+.+++.+...+|+|||+++...++..+..|... ...+..+||.++...|..+++.|.+....+|+||+++++|+|+
T Consensus 244 ~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDi 323 (567)
T KOG0345|consen 244 SQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDI 323 (567)
T ss_pred HHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCC
Confidence 99999999999999999999999999999998775 5689999999999999999999999888999999999999999
Q ss_pred CCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHH
Q 015595 337 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI 385 (404)
Q Consensus 337 p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 385 (404)
|++++||++|+|.+++.|.||.||++|.|+.|.+++|+.+.+.+...-+
T Consensus 324 p~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 324 PGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred CCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 9999999999999999999999999999999999999999766654433
No 21
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-56 Score=388.84 Aligned_cols=357 Identities=31% Similarity=0.529 Sum_probs=331.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCC---ceeEEEEc
Q 015595 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILS 108 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~---~~~~lil~ 108 (404)
..+|.+++|+..+.+++...||..|+|+|..++|-.+-|++++-+|.||||||.++++|++..+.-.+. ..||||+|
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 447999999999999999999999999999999999999999999999999999999999998865543 45899999
Q ss_pred ccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEeccccc
Q 015595 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDESDEM 185 (404)
Q Consensus 109 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE~h~~ 185 (404)
||++|+.|.+...+++..+.++.+.++.||.+...+...+.+.++|+|+||++|.+++.+. .++++.++|+||++++
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999886 5778889999999999
Q ss_pred cccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEec--CchhHHHHHHh
Q 015595 186 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE--REEWKFDTLCD 263 (404)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ 263 (404)
++.+|...+..+++.++++.|.+++|||++..+.++..-.+..|+.+.+.+..-....+.+.+..+. ....+...+..
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~ 419 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS 419 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888888877766543 34456677777
Q ss_pred hhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEE
Q 015595 264 LYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVI 343 (404)
Q Consensus 264 ~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi 343 (404)
++...-..+++||+.+++.|..+.-.|--.|+.+.-+||.+++.+|-+.++.|++.+++|||||+++++|+|++++.+||
T Consensus 420 l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI 499 (691)
T KOG0338|consen 420 LITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI 499 (691)
T ss_pred HHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE
Confidence 77777778999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHH
Q 015595 344 NYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQY 388 (404)
Q Consensus 344 ~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~ 388 (404)
+|..|.+...|+||+||..|.|+.|.++.|+.+++...++.+...
T Consensus 500 Ny~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 500 NYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 999999999999999999999999999999999999988877665
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-54 Score=368.97 Aligned_cols=380 Identities=31% Similarity=0.514 Sum_probs=340.8
Q ss_pred CcceeeccCCccccccccc-CCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc
Q 015595 19 DKMVFETTEGVEAITSFDA-MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (404)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~ 97 (404)
+--+.+....+.|..+|++ ++..+++.+.+.+.||..|+|.|.++||-++.|.+.+..|.||+|||++++++.+-.+..
T Consensus 205 d~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~a 284 (629)
T KOG0336|consen 205 DLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDA 284 (629)
T ss_pred ccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeec
Confidence 3344445556777778877 678999999999999999999999999999999999999999999999999888766633
Q ss_pred ------CCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--
Q 015595 98 ------SSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-- 169 (404)
Q Consensus 98 ------~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-- 169 (404)
...++.+|+++|+++|+.|..-+..++. +.+....++.|+-+-.+++..+..+.+|+++||++|.++.-.+
T Consensus 285 qp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i 363 (629)
T KOG0336|consen 285 QPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVI 363 (629)
T ss_pred cchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCee
Confidence 3446789999999999999998887765 6678888888988888999999999999999999999988776
Q ss_pred CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCcccc-CCceEEE
Q 015595 170 TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTL-EGIKQFF 248 (404)
Q Consensus 170 ~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 248 (404)
.+..+.++|+|||+.+++.+|..++.+++-.++++.|.++.|||||+.+..+...++.+|..+....-.... ..+.+.+
T Consensus 364 ~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i 443 (629)
T KOG0336|consen 364 NLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI 443 (629)
T ss_pred eeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE
Confidence 466788999999999999999999999999999999999999999999999999999999988887666544 4455655
Q ss_pred EEecCchhHHHHHHhhhhcCC-CCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 015595 249 VAVEREEWKFDTLCDLYDTLT-ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT 327 (404)
Q Consensus 249 ~~~~~~~~~~~~l~~~l~~~~-~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 327 (404)
.+.....+...+..++++.. ..|+||||..+..|+.+...|.-.|+....+||.-.+.+|+..++.|+.|+++|||||
T Consensus 444 -~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaT 522 (629)
T KOG0336|consen 444 -IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVAT 522 (629)
T ss_pred -EecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEe
Confidence 66666668888888888754 4699999999999999999998889999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccc
Q 015595 328 DVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNV 400 (404)
Q Consensus 328 ~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
+.+++|+|+|++.+|+.||.|.+...|.||+||.||.|+.|.++.|+...|...+.++.+.|++-..++|..|
T Consensus 523 DlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL 595 (629)
T KOG0336|consen 523 DLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDEL 595 (629)
T ss_pred chhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876
No 23
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-54 Score=379.16 Aligned_cols=376 Identities=33% Similarity=0.518 Sum_probs=339.6
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCC------
Q 015595 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS------ 99 (404)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~------ 99 (404)
...+.++..|.+..+.+.+...++..++..|+|+|+.+++.+..|++.+.+|+||||||.+++++++..+....
T Consensus 67 ~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~ 146 (482)
T KOG0335|consen 67 RDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGE 146 (482)
T ss_pred CccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcc
Confidence 44456677888888899998888889999999999999999999999999999999999999999998885542
Q ss_pred ----CceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCc
Q 015595 100 ----REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRT 173 (404)
Q Consensus 100 ----~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~ 173 (404)
..++++|++||++|+.|.+++.+++...........+|+.+.........++|+|+++||+++.+++++. .++.
T Consensus 147 ~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~ 226 (482)
T KOG0335|consen 147 SGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDN 226 (482)
T ss_pred cCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhh
Confidence 2578999999999999999999999988899999999999998999999999999999999999999987 4678
Q ss_pred ccceEEeccccccc-cCcHHHHHHHHhhCCC----CceEEEEeeecchHHHHHHHhccCC-CeEEEecCCccccCCceEE
Q 015595 174 RAIKLLDESDEMLS-RGFKDQIYDVYRYLPP----DLQVVLISATLPHEILEMTTKFMTD-PVKILVKRDELTLEGIKQF 247 (404)
Q Consensus 174 ~~~vIiDE~h~~~~-~~~~~~~~~~~~~~~~----~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 247 (404)
..++|+||++.+++ .+|.+.++.+...... ..|.+++|||.+.++..+...++.+ ...+.+........++.+.
T Consensus 227 ~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~ 306 (482)
T KOG0335|consen 227 CKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQK 306 (482)
T ss_pred CcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeE
Confidence 88999999999999 8999999999888743 6799999999999988887777776 5556666666777888888
Q ss_pred EEEecCchhHHHHHHhhhhcCC----CC-----eEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhc
Q 015595 248 FVAVEREEWKFDTLCDLYDTLT----IT-----QAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS 318 (404)
Q Consensus 248 ~~~~~~~~~~~~~l~~~l~~~~----~~-----k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 318 (404)
..++...+ |...|.+++.... .+ +++|||.+++.+..++..|...++.+..+||+-++.+|.+.+..|++
T Consensus 307 i~~V~~~~-kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~ 385 (482)
T KOG0335|consen 307 ILFVNEME-KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN 385 (482)
T ss_pred eeeecchh-hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc
Confidence 88888776 6666666665432 23 79999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCc
Q 015595 319 GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPM 398 (404)
Q Consensus 319 ~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (404)
|...+||||.++++|+|+|++++||.||.|.+..+|+||+||+||.|+.|.++.|+++.+....+.+.+.+.+.-.++|.
T Consensus 386 g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~ 465 (482)
T KOG0335|consen 386 GKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQ 465 (482)
T ss_pred CCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 015595 399 NVAD 402 (404)
Q Consensus 399 ~~~~ 402 (404)
|+.+
T Consensus 466 wl~~ 469 (482)
T KOG0335|consen 466 WLSE 469 (482)
T ss_pred HHHh
Confidence 9875
No 24
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-52 Score=366.26 Aligned_cols=379 Identities=32% Similarity=0.498 Sum_probs=353.4
Q ss_pred ccCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhh-----cCC
Q 015595 25 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD-----TSS 99 (404)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~-----~~~ 99 (404)
....+.+..+|+++++++.+..+.+...|.+|++.|..+++..+.|++++=.|.||||||-+++.+++-.+- ...
T Consensus 215 g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g 294 (731)
T KOG0339|consen 215 GSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPG 294 (731)
T ss_pred cCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCC
Confidence 466778999999999999999999999999999999999999999999999999999999998888876662 234
Q ss_pred CceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccce
Q 015595 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIK 177 (404)
Q Consensus 100 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~v 177 (404)
.++..+|+|||++|+.|.+.+.+++++..++++..++||-+..++...+..++.|+|+||+++.++++.. .+.+..++
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 5778999999999999999999999999999999999999999999999999999999999999998875 67888999
Q ss_pred EEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhH
Q 015595 178 LLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK 257 (404)
Q Consensus 178 IiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (404)
||||++++.+.+|..+++.+.+.++++.|.+++|||++..+..+...++.+|+.+....-...-..+.+.+..++....|
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~K 454 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKK 454 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHH
Confidence 99999999999999999999999999999999999999999999999999999988876666667889999999988888
Q ss_pred HHHHH-hhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCC
Q 015595 258 FDTLC-DLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 336 (404)
Q Consensus 258 ~~~l~-~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~ 336 (404)
+.-+. .+......+++|||+.-...+++++..|+-.++.+..+||++.+.+|.+++.+|+.+...|||+|+...+|+|+
T Consensus 455 l~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI 534 (731)
T KOG0339|consen 455 LNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDI 534 (731)
T ss_pred HHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCc
Confidence 77665 45556667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcccccc
Q 015595 337 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 403 (404)
Q Consensus 337 p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
|.+.+|+.||...+...+.||+||.||.|.+|..+.++++.|..+.-.+-+.|+.....+|..+.||
T Consensus 535 ~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dl 601 (731)
T KOG0339|consen 535 PSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDL 601 (731)
T ss_pred cccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999888765
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-53 Score=362.45 Aligned_cols=358 Identities=29% Similarity=0.466 Sum_probs=314.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc------CCCceeEEE
Q 015595 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------SSREVQALI 106 (404)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~------~~~~~~~li 106 (404)
.+|+++++++.+++++.+.||.+|+..|+.+++.+++|++++..|-||||||.+|++++++.+.. +..++.+++
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 67999999999999999999999999999999999999999999999999999999999998844 344678999
Q ss_pred EcccHHHHHHHHHHHHHHccccC--eeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccC---CCcccceEEec
Q 015595 107 LSPTRELATQTEKVILAIGDFIN--IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT---LRTRAIKLLDE 181 (404)
Q Consensus 107 l~p~~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~~vIiDE 181 (404)
++||++|++|.+..+.++..... +++.-+..+.+.......+.+.++|+|+||.++..++.... .+.+.++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999988654432 33333343444334445667789999999999999998764 56678999999
Q ss_pred cccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccc-cCCceEEEEEecCchhHHHH
Q 015595 182 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELT-LEGIKQFFVAVEREEWKFDT 260 (404)
Q Consensus 182 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 260 (404)
++.++..+|...+..+...+|+..|.++||||+++++..+.+.++.+|+.+.....+.. +..+.+++..+. +.+|+-.
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs-e~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS-EEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec-cchhHHH
Confidence 99999999999999999999999999999999999999999999999999887776655 456777777777 5558888
Q ss_pred HHhhhh-cCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----------
Q 015595 261 LCDLYD-TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD----------- 328 (404)
Q Consensus 261 l~~~l~-~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~----------- 328 (404)
+..+++ +.-.+|+|||+|+++.+.++.-.|.+.|++..++++.++...|-.++++|+.|-.+++|||+
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 888776 44568999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------------------ccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHH
Q 015595 329 ------------------------VWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRD 384 (404)
Q Consensus 329 ------------------------~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~ 384 (404)
-.++|||+..+.+|+++|.|.+...|+||+||.+|.+++|.++.|+.+.+......
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 23589999999999999999999999999999999999999999999998887777
Q ss_pred HHHHHcc
Q 015595 385 IEQYYST 391 (404)
Q Consensus 385 ~~~~~~~ 391 (404)
+++.+..
T Consensus 418 le~~~~d 424 (569)
T KOG0346|consen 418 LESILKD 424 (569)
T ss_pred HHHHHhh
Confidence 7766655
No 26
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-53 Score=356.31 Aligned_cols=377 Identities=63% Similarity=1.026 Sum_probs=351.3
Q ss_pred ccCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeE
Q 015595 25 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA 104 (404)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~ 104 (404)
.++..+-..+|++++|.+++.+.+...||..|...|+.++..+.+|.++..++.+|+|||.++..+++..+........+
T Consensus 18 esn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qa 97 (397)
T KOG0327|consen 18 ESNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQA 97 (397)
T ss_pred cccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHH
Confidence 34445566789999999999999999999999999999999999999999999999999999999999988777777789
Q ss_pred EEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh-cCCCeEEeChHHHHHHHHccC--CCcccceEEec
Q 015595 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLDE 181 (404)
Q Consensus 105 lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~l~~~~--~~~~~~vIiDE 181 (404)
|+++|+++|+.|..+.....+...+.++..+.|+.....+...+. ..+.|+++||+++...+.... .+...+.++||
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDE 177 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDE 177 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecc
Confidence 999999999999999999999888999999999888765544443 458999999999999998764 34568889999
Q ss_pred cccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHH
Q 015595 182 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTL 261 (404)
Q Consensus 182 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (404)
++.++..++...+..+++.+|++.|++++|||.+.++....+++..+|+.+.....+....++.+++......+ |+..+
T Consensus 178 aDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l 256 (397)
T KOG0327|consen 178 ADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTL 256 (397)
T ss_pred hHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877 99999
Q ss_pred HhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCE
Q 015595 262 CDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSL 341 (404)
Q Consensus 262 ~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~ 341 (404)
..+.+ .-...+||||+++.+..+...|..++..+..+|+++.+.+|..+...|+.|..+|||+|+.+++|+|+..++.
T Consensus 257 ~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~sl 334 (397)
T KOG0327|consen 257 CDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSL 334 (397)
T ss_pred HHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcce
Confidence 99999 5678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccccC
Q 015595 342 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 404 (404)
Q Consensus 342 vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (404)
|++|++|....+|++|+||+||.|++|.++.++.+.+...++.+++++..+++++|..+.+|+
T Consensus 335 vinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l~ 397 (397)
T KOG0327|consen 335 VVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADLL 397 (397)
T ss_pred eeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhcC
Confidence 999999999999999999999999999999999999999999999999999999999998875
No 27
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-52 Score=352.11 Aligned_cols=367 Identities=41% Similarity=0.695 Sum_probs=331.4
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcC--CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEE
Q 015595 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (404)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~li 106 (404)
.-...+|+++.|.+++.+.+..++|..|...|..++|.++.. ++.|.++..|+|||.++.+.++.+....-..+.++.
T Consensus 86 lyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iC 165 (477)
T KOG0332|consen 86 LYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCIC 165 (477)
T ss_pred ccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCcee
Confidence 344567999999999999999999999999999999999975 688999999999999999999999888777788999
Q ss_pred EcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHc-c--CCCcccceEEeccc
Q 015595 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-K--TLRTRAIKLLDESD 183 (404)
Q Consensus 107 l~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~--~~~~~~~vIiDE~h 183 (404)
++|+++|+.|+.+.+.+++++.+++..+...+...... .. -..+|+|+||+.+.+++.. . .+..+.+.|+|||+
T Consensus 166 LaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~~--i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD 242 (477)
T KOG0332|consen 166 LAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-NK--LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD 242 (477)
T ss_pred eCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-Cc--chhheeeCCCccHHHHHHHHHhhChhhceEEEecchh
Confidence 99999999999999999999988888777655522111 01 1267999999999998876 2 56677888999999
Q ss_pred ccccc-CcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHH
Q 015595 184 EMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLC 262 (404)
Q Consensus 184 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 262 (404)
.+.+. ++...-..+++.+|++.|++++|||.......+......++..+....+.....++.++|..+.....|.+.|.
T Consensus 243 ~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~ 322 (477)
T KOG0332|consen 243 VMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALV 322 (477)
T ss_pred hhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHH
Confidence 98766 57788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEE
Q 015595 263 DLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLV 342 (404)
Q Consensus 263 ~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~v 342 (404)
++.....-+..+|||.+++.|.+++..+...|..+..+||++...+|..+++.|++|..+|||+|.++.+|||.+.++.|
T Consensus 323 ~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~V 402 (477)
T KOG0332|consen 323 NLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVV 402 (477)
T ss_pred HHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEE
Confidence 99998888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCC------CChhhhhhhccccCCCCCceeEEEEeccC-cHHHHHHHHHHHccccccCCc
Q 015595 343 INYDLP------NNRELYIHRIGRSGRFGRKGVAINFVKND-DIKILRDIEQYYSTQIDEMPM 398 (404)
Q Consensus 343 i~~~~p------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 398 (404)
|.|++| .+..+|+||+||+||+|+.|.++.+++.+ +...+..++++|+...+++..
T Consensus 403 vNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 403 VNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred EecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 999998 47889999999999999999999999877 667888999999887777654
No 28
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-52 Score=363.46 Aligned_cols=367 Identities=28% Similarity=0.456 Sum_probs=307.7
Q ss_pred eeeccCCcccccccccCCCCHHHHHHHHH-CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC--
Q 015595 22 VFETTEGVEAITSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-- 98 (404)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~-- 98 (404)
+...++.+=....|..+++++.+.+.|++ +++..|+..|.+++|.+++|++++|.++||||||++|++++.+.+...
T Consensus 125 vk~v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ 204 (708)
T KOG0348|consen 125 VKQVSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP 204 (708)
T ss_pred hccccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCc
Confidence 33344444556679999999999999987 799999999999999999999999999999999999999999988543
Q ss_pred ----CCceeEEEEcccHHHHHHHHHHHHHHcccc-CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---C
Q 015595 99 ----SREVQALILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---T 170 (404)
Q Consensus 99 ----~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~ 170 (404)
..|+-+||++||++|+.|.++.++++.+.+ .+-...+.||.....+...+..+++|+|+||+++.+++++. .
T Consensus 205 ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~ 284 (708)
T KOG0348|consen 205 KIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIK 284 (708)
T ss_pred cccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchhe
Confidence 346789999999999999999999987665 45567788888887788888899999999999999999875 4
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCC-------------CCceEEEEeeecchHHHHHHHhccCCCeEEEecCC
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLP-------------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 237 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 237 (404)
+..+..+|+||++++++.+|...+..+++.+. ...|.+++|||+.+.+..+...-+.+|..+..+..
T Consensus 285 ~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s 364 (708)
T KOG0348|consen 285 FSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKS 364 (708)
T ss_pred eeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccch
Confidence 67789999999999999999998888877662 12578999999999988888888888887772211
Q ss_pred -------------------------ccccCCceEEEEEecCchhHHHHHH----hhhhcCCCCeEEEEecchhhHHHHHH
Q 015595 238 -------------------------ELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLTITQAVIFCNTKRKVDWLTE 288 (404)
Q Consensus 238 -------------------------~~~~~~~~~~~~~~~~~~~~~~~l~----~~l~~~~~~k~lIf~~~~~~~~~l~~ 288 (404)
...+..+.+.|..++... ++-.|. ...+.....|+|||+++.+.+++-+.
T Consensus 365 ~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKL-RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~ 443 (708)
T KOG0348|consen 365 HSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKL-RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYS 443 (708)
T ss_pred hhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCch-hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHH
Confidence 112334556666666654 333333 34445556789999999999999888
Q ss_pred HHhhC----------------------CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEcc
Q 015595 289 KMRGY----------------------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD 346 (404)
Q Consensus 289 ~l~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~ 346 (404)
.|... +..+..+||+|++++|..+++.|...+..||+||+++++|+|+|.+++||.|+
T Consensus 444 lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd 523 (708)
T KOG0348|consen 444 LFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYD 523 (708)
T ss_pred HHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeC
Confidence 87542 24578999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHH
Q 015595 347 LPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYY 389 (404)
Q Consensus 347 ~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 389 (404)
+|.+..+|+||+||..|.|.+|.+++|+.+.+...++.++.+-
T Consensus 524 ~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 524 PPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred CCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhc
Confidence 9999999999999999999999999999999998777766543
No 29
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2e-50 Score=393.35 Aligned_cols=348 Identities=18% Similarity=0.267 Sum_probs=277.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHH
Q 015595 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (404)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~ 119 (404)
+++.+.++|.+.||.+|+++|.++++.+++|+++++.+|||||||+++++++++.+... ++.++||++|+++|+.|+..
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~~ 99 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAADQLR 99 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999988654 45689999999999999999
Q ss_pred HHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHc------cCCCcccceEEeccccccccCcHHH
Q 015595 120 VILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR------KTLRTRAIKLLDESDEMLSRGFKDQ 193 (404)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~------~~~~~~~~vIiDE~h~~~~~~~~~~ 193 (404)
.++++. ..++++..+.|+.... +...+..+++|+++||+.+...+.. ..+..++++|+||+|.+.+ .++..
T Consensus 100 ~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~ 176 (742)
T TIGR03817 100 AVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSH 176 (742)
T ss_pred HHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHH
Confidence 999986 4467887777777643 3345556789999999998743321 1367889999999999865 34433
Q ss_pred HHH-------HHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecC-------------
Q 015595 194 IYD-------VYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER------------- 253 (404)
Q Consensus 194 ~~~-------~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 253 (404)
+.. +....+.++|++++|||+++.. .....+++.+..+. .... .+....+...+.+.
T Consensus 177 ~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~i-~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~r 253 (742)
T TIGR03817 177 VALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVAV-TEDG-SPRGARTVALWEPPLTELTGENGAPVR 253 (742)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEEE-CCCC-CCcCceEEEEecCCccccccccccccc
Confidence 332 3334456789999999998874 45666777775443 2221 12222222222111
Q ss_pred ---chhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhC--------CCeEEEecCCCCHHHHHHHHHHHhcCCCc
Q 015595 254 ---EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY--------NFTVSSMHGDMPQKERDAIMGEFRSGTTR 322 (404)
Q Consensus 254 ---~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 322 (404)
...+...+..+++. +.++||||++++.++.++..++.. +..+..+||++++++|.++++.|++|+.+
T Consensus 254 ~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~ 331 (742)
T TIGR03817 254 RSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL 331 (742)
T ss_pred cchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce
Confidence 11345556666654 579999999999999999988753 45788999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEecc--CcHHHHHHHHHHHccccccC
Q 015595 323 VLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKN--DDIKILRDIEQYYSTQIDEM 396 (404)
Q Consensus 323 vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 396 (404)
+||||+++++|+|+|++++||+++.|.+..+|.||+||+||.|+.|.++++..+ .|...+...++.++...++.
T Consensus 332 vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 332 GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999999999999874 46667777788888776654
No 30
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.3e-52 Score=354.63 Aligned_cols=378 Identities=33% Similarity=0.538 Sum_probs=333.2
Q ss_pred eccCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhh-------
Q 015595 24 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD------- 96 (404)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~------- 96 (404)
+....+.|+.+|.++-++..+.+.|++.|+.+|+|.|.+.+|-+++|++.|-.|-||||||+++.+++.-...
T Consensus 161 eGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lP 240 (610)
T KOG0341|consen 161 EGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLP 240 (610)
T ss_pred eCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCc
Confidence 3455678899999999999999999999999999999999999999999999999999999999888765542
Q ss_pred -cCCCceeEEEEcccHHHHHHHHHHHHHHcccc------CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc
Q 015595 97 -TSSREVQALILSPTRELATQTEKVILAIGDFI------NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK 169 (404)
Q Consensus 97 -~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~ 169 (404)
....++-.||+||+++|+.|.++.+..+...+ .++..++.||.+..++...+..+.+|+|+||+++.+++.+.
T Consensus 241 f~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK 320 (610)
T KOG0341|consen 241 FARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKK 320 (610)
T ss_pred cccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHh
Confidence 23557789999999999999999998876433 46778999999999999999999999999999999999876
Q ss_pred --CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEE
Q 015595 170 --TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQF 247 (404)
Q Consensus 170 --~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (404)
.++-.+++.+||++++.+.+|...++.++.++....|.+++|||+|..+..+.+.-+-.|+.+.+....+..-++.+.
T Consensus 321 ~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQe 400 (610)
T KOG0341|consen 321 IMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQE 400 (610)
T ss_pred hccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHH
Confidence 567788999999999999999999999999999999999999999999999999999999999987766655444444
Q ss_pred EEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 015595 248 FVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT 327 (404)
Q Consensus 248 ~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 327 (404)
..++.... |.-.+.+.++. ...++||||..+..++.+.++|--.|..++.+||+-++++|...++.|+.|+.+|||||
T Consensus 401 vEyVkqEa-KiVylLeCLQK-T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVAT 478 (610)
T KOG0341|consen 401 VEYVKQEA-KIVYLLECLQK-TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVAT 478 (610)
T ss_pred HHHHHhhh-hhhhHHHHhcc-CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEe
Confidence 44444433 67777777766 44689999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccC-cHHHHHHHHHHHccccccCCcccccc
Q 015595 328 DVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKND-DIKILRDIEQYYSTQIDEMPMNVADL 403 (404)
Q Consensus 328 ~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
++++.|+|+|++.+||+||.|.....|.||+||.||.|+.|.+..|+... +...+-.++..+.+.-.++|+-|.+|
T Consensus 479 DVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L 555 (610)
T KOG0341|consen 479 DVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAEL 555 (610)
T ss_pred cchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999876 66777788888887777777666543
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-50 Score=351.18 Aligned_cols=365 Identities=27% Similarity=0.451 Sum_probs=301.5
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcC-CcEEEEcCCCCchhhHhHHHHHhhhhcC-------
Q 015595 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTS------- 98 (404)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~iv~a~tGsGKT~~~~~~~~~~~~~~------- 98 (404)
......+-|.+++++..+.++|.+.||.+|+++|...++.+..| .+++=.|.||||||+++-+++++.+...
T Consensus 175 ~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~ 254 (731)
T KOG0347|consen 175 SSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQEL 254 (731)
T ss_pred ccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhh
Confidence 34456677999999999999999999999999999999999988 7899999999999999999999855332
Q ss_pred ----CCcee--EEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---
Q 015595 99 ----SREVQ--ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--- 169 (404)
Q Consensus 99 ----~~~~~--~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--- 169 (404)
..+++ .||++||++|+.|...-+..+....++.+..++||.....+.+.+...++|+|+||++|+.++...
T Consensus 255 ~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~ 334 (731)
T KOG0347|consen 255 SNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH 334 (731)
T ss_pred hhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh
Confidence 12334 999999999999999999999999999999999999988888888888999999999999999875
Q ss_pred --CCCcccceEEeccccccccCcHHHHHHHHhhCC-----CCceEEEEeeecchH---------------------HHHH
Q 015595 170 --TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLP-----PDLQVVLISATLPHE---------------------ILEM 221 (404)
Q Consensus 170 --~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~-----~~~~~i~~SAT~~~~---------------------~~~~ 221 (404)
.+..+.++|+||++++.+.++...+..+++.+. ...|.+.+|||++-. +..+
T Consensus 335 l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L 414 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL 414 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH
Confidence 467889999999999999998888888877764 356899999997421 2222
Q ss_pred HHh--ccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEE
Q 015595 222 TTK--FMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSS 299 (404)
Q Consensus 222 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~ 299 (404)
++. +.+.|..+...........+......|+..+ +.-.+..++.. -++++|||||+++.+.+++-.|+..+++...
T Consensus 415 mk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~e-KD~ylyYfl~r-yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 415 MKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLE-KDLYLYYFLTR-YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccc-cceeEEEEEee-cCCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 222 2344544444433333222222222221111 22223333333 3478999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcH
Q 015595 300 MHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 379 (404)
Q Consensus 300 ~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 379 (404)
+|+.|.+.+|-.-+++|++....|||||+++.+|+|||++.+||+|-.|.+...|+||.||..|.+..|..+.++.+.++
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccc
Q 015595 380 KILRDIEQYYSTQI 393 (404)
Q Consensus 380 ~~~~~~~~~~~~~~ 393 (404)
..+..+..-+++..
T Consensus 573 ~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 573 GPLKKLCKTLKKKE 586 (731)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998887743
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-49 Score=372.66 Aligned_cols=380 Identities=33% Similarity=0.573 Sum_probs=350.7
Q ss_pred ceeeccCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC--
Q 015595 21 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-- 98 (404)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~-- 98 (404)
+......-+.|+.+|...|++..+...++++||..|+++|..+||+++.|+++|..|-||||||++++++++.+....
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 555667778899999999999999999999999999999999999999999999999999999999999998766332
Q ss_pred ---CCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc-----C
Q 015595 99 ---SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-----T 170 (404)
Q Consensus 99 ---~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-----~ 170 (404)
..++.++|++||++|+.|+.++++++...+++.+.+++|+......+..+.+++.|+||||+++..++..+ .
T Consensus 433 ~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 433 LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTN 512 (997)
T ss_pred hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccc
Confidence 34789999999999999999999999999999999999999999999999999999999999999888654 3
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEE
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA 250 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (404)
+....++|+||++.+.+..|.+++..+++.+++..|.+++|||++..+..+....+..|+.+.+........++.+.+..
T Consensus 513 lrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V 592 (997)
T KOG0334|consen 513 LRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRV 592 (997)
T ss_pred ccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEE
Confidence 55666999999999999999999999999999999999999999999888888888899999988888888999999999
Q ss_pred ecCchhHHHHHHhhhhc-CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 015595 251 VEREEWKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV 329 (404)
Q Consensus 251 ~~~~~~~~~~l~~~l~~-~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 329 (404)
+.....|+..|.+++.. ...+++||||.+.+.|..+.+.|.+.++.|..+||+-+..+|...+++|+++...+||+|+.
T Consensus 593 ~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsv 672 (997)
T KOG0334|consen 593 CAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSV 672 (997)
T ss_pred ecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhh
Confidence 99777798888888864 45689999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccc
Q 015595 330 WARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNV 400 (404)
Q Consensus 330 ~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
+++|+|++.+..||+|+.|.-+..|.||.||+||.|+.|.+++|+.+++......|.+.+...-...|..+
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l 743 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLL 743 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999987777777544
No 33
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.8e-47 Score=370.72 Aligned_cols=336 Identities=17% Similarity=0.279 Sum_probs=261.9
Q ss_pred cCCCCHHHHHHHHH-CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHH
Q 015595 37 AMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (404)
Q Consensus 37 ~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~ 115 (404)
.+|++..+...++. +|+..+||.|.++++.++.|+++++.+|||+|||++|+++++.. +..+|||+|+++|+.
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmq 514 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQ 514 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHH
Confidence 57778778777766 79999999999999999999999999999999999999998753 235999999999998
Q ss_pred HHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh------cCCCeEEeChHHHHH------HHHcc-CCCcccceEEecc
Q 015595 116 QTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE------HGVHVVSGTPGRVCD------MIKRK-TLRTRAIKLLDES 182 (404)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iiv~T~~~l~~------~l~~~-~~~~~~~vIiDE~ 182 (404)
++...+... ++....+.++....+....+. ...+|+++||+++.. .+... ....+.++|||||
T Consensus 515 DQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEA 590 (1195)
T PLN03137 515 DQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEA 590 (1195)
T ss_pred HHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcc
Confidence 776666553 577788888776554433222 468999999999752 22211 2344788999999
Q ss_pred ccccccC--cHHHHHH---HHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhH
Q 015595 183 DEMLSRG--FKDQIYD---VYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK 257 (404)
Q Consensus 183 h~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (404)
|.+++++ |...... +...+ +..+++++|||+++.....+...+.....+... .....+++ .+.........
T Consensus 591 HcVSqWGhDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~RpNL--~y~Vv~k~kk~ 666 (1195)
T PLN03137 591 HCVSQWGHDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRPNL--WYSVVPKTKKC 666 (1195)
T ss_pred hhhhhcccchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCccce--EEEEeccchhH
Confidence 9998875 5554443 33344 467899999999988777665554432222221 22233333 23333333323
Q ss_pred HHHHHhhhhc-CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCC
Q 015595 258 FDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 336 (404)
Q Consensus 258 ~~~l~~~l~~-~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~ 336 (404)
...+..++.. ..+.++||||.+++.++.++..|...++.+..+||+|+..+|..+++.|.+|+.+|||||.++++|||+
T Consensus 667 le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDk 746 (1195)
T PLN03137 667 LEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINK 746 (1195)
T ss_pred HHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCc
Confidence 4556666653 345679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHH
Q 015595 337 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 386 (404)
Q Consensus 337 p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 386 (404)
|++++||++++|.|...|+|++||+||.|+.+.|++++...|...+..+.
T Consensus 747 PDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 747 PDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred cCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776655554
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3e-47 Score=357.31 Aligned_cols=320 Identities=18% Similarity=0.334 Sum_probs=249.8
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
+||..|+|+|.++++.+++++++++.+|||+|||++|+++++.. +..++|++|+++|+.|+.+.+... ++
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~----gi 76 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS----GI 76 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc----CC
Confidence 69999999999999999999999999999999999999887642 235999999999999999888764 46
Q ss_pred eEEEEEcCcchHHHHH---HH-hcCCCeEEeChHHHHH---HHHcc-CCCcccceEEeccccccccC--cHHHHH---HH
Q 015595 131 QAHACVGGKSVGEDIR---KL-EHGVHVVSGTPGRVCD---MIKRK-TLRTRAIKLLDESDEMLSRG--FKDQIY---DV 197 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~---~~-~~~~~iiv~T~~~l~~---~l~~~-~~~~~~~vIiDE~h~~~~~~--~~~~~~---~~ 197 (404)
....+.++....+... .+ ....+|+++||+.+.. ++... ....++++||||+|.+.+++ +..... .+
T Consensus 77 ~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 77 PATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 6677777665443221 22 2458999999998653 22222 45678999999999998764 344333 33
Q ss_pred HhhCCCCceEEEEeeecchHHHHHHHhccC--CCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhh-cCCCCeEE
Q 015595 198 YRYLPPDLQVVLISATLPHEILEMTTKFMT--DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-TLTITQAV 274 (404)
Q Consensus 198 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~k~l 274 (404)
...+ +..+++++|||+++.....+...+. .+..+.. ....+++. +............+..++. ..++.++|
T Consensus 157 ~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~--~~v~~~~~~~~~~l~~~l~~~~~~~~~I 230 (470)
T TIGR00614 157 KQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLY--YEVRRKTPKILEDLLRFIRKEFKGKSGI 230 (470)
T ss_pred HHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcE--EEEEeCCccHHHHHHHHHHHhcCCCceE
Confidence 4444 4678999999999887665554432 3332221 12223332 2222222234555666665 44556679
Q ss_pred EEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhh
Q 015595 275 IFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELY 354 (404)
Q Consensus 275 If~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~ 354 (404)
|||+++++++.++..|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|...|
T Consensus 231 IF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y 310 (470)
T TIGR00614 231 IYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESY 310 (470)
T ss_pred EEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCCceeEEEEeccCcHHHHHHHH
Q 015595 355 IHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 386 (404)
Q Consensus 355 ~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 386 (404)
+||+||+||.|+.+.+++++.+.|...++.+.
T Consensus 311 ~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 311 YQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred HhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 99999999999999999999998887666554
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.1e-47 Score=343.71 Aligned_cols=359 Identities=30% Similarity=0.550 Sum_probs=324.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccH
Q 015595 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (404)
...|+++-+...+...|+..+|..|++.|..++|.++.+.+.||++..|+|||+++...++..+.........+|++||+
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTR 103 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTR 103 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecch
Confidence 35688888999999999999999999999999999999999999999999999999999999888877778899999999
Q ss_pred HHHHHHHHHHHHHccc-cCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccc-
Q 015595 112 ELATQTEKVILAIGDF-INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLS- 187 (404)
Q Consensus 112 ~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~- 187 (404)
+++-|..+.+.+++.. .+..+..+.||+........+. .+.|+|+||+++..+.+.. +...++++|+|||+.+.+
T Consensus 104 EiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t 182 (980)
T KOG4284|consen 104 EIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDT 182 (980)
T ss_pred hhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhch
Confidence 9999999999998754 4899999999998776655544 4889999999999999886 566789999999999988
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCch-------hHHHH
Q 015595 188 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE-------WKFDT 260 (404)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 260 (404)
..|...+..++..+|+..|++++|||.+..+.+.+..++.+|.-+.........-++.++++...... .|++.
T Consensus 183 ~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~ 262 (980)
T KOG4284|consen 183 ESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQK 262 (980)
T ss_pred hhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999888888889999998776552 37888
Q ss_pred HHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCC
Q 015595 261 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVS 340 (404)
Q Consensus 261 l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~ 340 (404)
|..++...+-...||||+....|+-++.+|+..|++|-++.|.|++.+|..++..++.-..+|||+|+.-++|||-+.++
T Consensus 263 L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vN 342 (980)
T KOG4284|consen 263 LTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVN 342 (980)
T ss_pred HHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcH-----HHHHHHHHHHcc
Q 015595 341 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI-----KILRDIEQYYST 391 (404)
Q Consensus 341 ~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 391 (404)
.||..|.|.+..+|.||+|||||+|..|..+.++..... .+.+++....+.
T Consensus 343 LVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m~~ria~~~~~ 398 (980)
T KOG4284|consen 343 LVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAMAYRIAVTVKR 398 (980)
T ss_pred eEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHHHHHHhhhhee
Confidence 999999999999999999999999999999999887644 222455544444
No 36
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5.5e-46 Score=357.42 Aligned_cols=328 Identities=19% Similarity=0.343 Sum_probs=254.0
Q ss_pred CHHHHHHHHH-CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHH
Q 015595 41 KDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (404)
Q Consensus 41 ~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~ 119 (404)
.+...+.|++ +||..++|+|+++++.+++++++++.+|||+|||++|+++++.. ...++|++|+++|+.|+.+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~ 83 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVD 83 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHH
Confidence 3334455555 69999999999999999999999999999999999999888743 2359999999999999999
Q ss_pred HHHHHccccCeeEEEEEcCcchHHHHHH---H-hcCCCeEEeChHHHHH--HHHccCCCcccceEEeccccccccC--cH
Q 015595 120 VILAIGDFINIQAHACVGGKSVGEDIRK---L-EHGVHVVSGTPGRVCD--MIKRKTLRTRAIKLLDESDEMLSRG--FK 191 (404)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~iiv~T~~~l~~--~l~~~~~~~~~~vIiDE~h~~~~~~--~~ 191 (404)
.++.. ++....+.++......... . ....+++++||+++.. ++.......++++||||||.+.+++ +.
T Consensus 84 ~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr 159 (607)
T PRK11057 84 QLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFR 159 (607)
T ss_pred HHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCccc
Confidence 88764 3666666665544333221 2 2347899999998873 3333234467999999999998764 33
Q ss_pred HH---HHHHHhhCCCCceEEEEeeecchHHHHHHHhcc--CCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhh
Q 015595 192 DQ---IYDVYRYLPPDLQVVLISATLPHEILEMTTKFM--TDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 266 (404)
Q Consensus 192 ~~---~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 266 (404)
.. +..+...+ +..+++++|||+++.....+...+ .+|.... .....+++. +..... ......+..++.
T Consensus 160 ~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~---~~~~r~nl~--~~v~~~-~~~~~~l~~~l~ 232 (607)
T PRK11057 160 PEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI---SSFDRPNIR--YTLVEK-FKPLDQLMRYVQ 232 (607)
T ss_pred HHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE---CCCCCCcce--eeeeec-cchHHHHHHHHH
Confidence 33 33444444 467899999999987665544433 2333222 112222322 122222 224566777777
Q ss_pred cCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEcc
Q 015595 267 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD 346 (404)
Q Consensus 267 ~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~ 346 (404)
...+.++||||+++++++.++..|+..++.+..+|++++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 233 ~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 233 EQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred hcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeC
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHH
Q 015595 347 LPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI 385 (404)
Q Consensus 347 ~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 385 (404)
.|.|...|+|++||+||.|.+|.+++++++.|...++.+
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 999999999999999999999999999999887655544
No 37
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=9.9e-46 Score=364.56 Aligned_cols=334 Identities=20% Similarity=0.301 Sum_probs=253.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhh-hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
.|+++++++++.+++.+.|+.+|+|+|.++++. +.+++++++++|||||||+++.++++..+.. +.+++|++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHH
Confidence 588999999999999999999999999999998 7789999999999999999999999988754 346999999999
Q ss_pred HHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCc
Q 015595 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGF 190 (404)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~ 190 (404)
|+.|..+.++++.. .++++..++|+...... .....+|+|+||+++..++.+. .+..++++|+||+|.+.+..+
T Consensus 79 La~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 79 LASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 99999999997653 47888888887654332 2245899999999999888753 467889999999999988776
Q ss_pred HHHHHHHHh---hCCCCceEEEEeeecchHHHHHHHhccCC-------CeEEE--ec-CCccccCCceEEEEEecCchhH
Q 015595 191 KDQIYDVYR---YLPPDLQVVLISATLPHEILEMTTKFMTD-------PVKIL--VK-RDELTLEGIKQFFVAVEREEWK 257 (404)
Q Consensus 191 ~~~~~~~~~---~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-------~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 257 (404)
+..+..++. ......|+|++|||+++. .++..+.... |..+. .. ........ .+...........
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~~~~~~ 232 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEVPSKDDT 232 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCCCccchHH
Confidence 666655543 335678999999999763 2333222111 11100 00 00000000 0000000111223
Q ss_pred HHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCC------------------------------------CeEEEec
Q 015595 258 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN------------------------------------FTVSSMH 301 (404)
Q Consensus 258 ~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~------------------------------------~~~~~~~ 301 (404)
...+.+.+. .++++||||++++.++.++..|.... ..+..+|
T Consensus 233 ~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hH 310 (737)
T PRK02362 233 LNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHH 310 (737)
T ss_pred HHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeec
Confidence 333444433 46789999999999998888775431 3578999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE----cc-----CCCChhhhhhhccccCCCCCc--eeE
Q 015595 302 GDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YD-----LPNNRELYIHRIGRSGRFGRK--GVA 370 (404)
Q Consensus 302 ~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~----~~-----~p~s~~~~~Q~~GR~~R~g~~--~~~ 370 (404)
++++..+|..+++.|++|.++|||||+++++|+|+|+.++||. |+ .|.+..+|.||+||+||.|.+ |.+
T Consensus 311 agl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ 390 (737)
T PRK02362 311 AGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEA 390 (737)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceE
Confidence 9999999999999999999999999999999999999998886 54 578999999999999999876 899
Q ss_pred EEEeccCc
Q 015595 371 INFVKNDD 378 (404)
Q Consensus 371 ~~~~~~~~ 378 (404)
++++.+.+
T Consensus 391 ii~~~~~~ 398 (737)
T PRK02362 391 VLLAKSYD 398 (737)
T ss_pred EEEecCch
Confidence 99987653
No 38
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-47 Score=323.54 Aligned_cols=364 Identities=32% Similarity=0.519 Sum_probs=334.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCC-CceeEEEEccc
Q 015595 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPT 110 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~p~ 110 (404)
.-.|..++|+..+.+++...||.+|+|.|+..+|.++++++++-.+-||||||.+++++++.++.... .+.+++++.|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 45799999999999999999999999999999999999999999999999999999999999886654 45689999999
Q ss_pred HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEecccccccc
Q 015595 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSR 188 (404)
Q Consensus 111 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~ 188 (404)
++|+.|..+.++.+++..++...++.|+....+++..+..+++|+++||+++..+.... .+..+.+|||||++.+...
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 99999999999999999999999999999999999999888999999999999877665 4778899999999999999
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcC
Q 015595 189 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 268 (404)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 268 (404)
+|...+..++..++...|.+++|||+|..+.+..+..+.+|..+..+.+....+.....+..+...+ |...|..++...
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~-K~aaLl~il~~~ 258 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE-KEAALLSILGGR 258 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH-HHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999997777666666666666665554 888888887764
Q ss_pred C-CCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccC
Q 015595 269 T-ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL 347 (404)
Q Consensus 269 ~-~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~ 347 (404)
. .+++++||.+..+++.+...|+..|+.+..+.+.+++..|..-+..|+.++..++|.|+.+.+|+|+|..+.||.|+.
T Consensus 259 ~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~ 338 (529)
T KOG0337|consen 259 IKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDF 338 (529)
T ss_pred ccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccC
Confidence 4 467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccC
Q 015595 348 PNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEM 396 (404)
Q Consensus 348 p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (404)
|.+...|.||+||+.|.|+.|..|.++.+++...+-.+..++.+++.-.
T Consensus 339 p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~ 387 (529)
T KOG0337|consen 339 PPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFA 387 (529)
T ss_pred CCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeec
Confidence 9999999999999999999999999999999999999999998866443
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.5e-45 Score=352.47 Aligned_cols=322 Identities=20% Similarity=0.314 Sum_probs=253.9
Q ss_pred HHHH-CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 47 GIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 47 ~l~~-~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
.|++ +||..+++.|.++++.+++|+++++++|||+|||++|+++++.. +..++|++|+++|+.|+.+.++..
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~- 76 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAA- 76 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHc-
Confidence 4444 79999999999999999999999999999999999999887642 235899999999999999988875
Q ss_pred cccCeeEEEEEcCcchHHHHHH----HhcCCCeEEeChHHHHHH--HHccCCCcccceEEeccccccccC--cHHH---H
Q 015595 126 DFINIQAHACVGGKSVGEDIRK----LEHGVHVVSGTPGRVCDM--IKRKTLRTRAIKLLDESDEMLSRG--FKDQ---I 194 (404)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~--l~~~~~~~~~~vIiDE~h~~~~~~--~~~~---~ 194 (404)
++.+..++++....+.... .....+++++||+++... ........++++||||+|.+..++ +... +
T Consensus 77 ---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 77 ---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 4677777777655443222 234689999999998632 222345678999999999998754 4443 3
Q ss_pred HHHHhhCCCCceEEEEeeecchHHHHHHHhccCC--CeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCe
Q 015595 195 YDVYRYLPPDLQVVLISATLPHEILEMTTKFMTD--PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ 272 (404)
Q Consensus 195 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k 272 (404)
..+...++.. +++++|||+++.....+...+.. +..+. .....+++. +.... ...+...+..++....+.+
T Consensus 154 ~~l~~~~~~~-~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~---~~~~r~nl~--~~v~~-~~~~~~~l~~~l~~~~~~~ 226 (591)
T TIGR01389 154 GSLAERFPQV-PRIALTATADAETRQDIRELLRLADANEFI---TSFDRPNLR--FSVVK-KNNKQKFLLDYLKKHRGQS 226 (591)
T ss_pred HHHHHhCCCC-CEEEEEeCCCHHHHHHHHHHcCCCCCCeEe---cCCCCCCcE--EEEEe-CCCHHHHHHHHHHhcCCCC
Confidence 3444455444 49999999998877766655542 22221 112222222 22222 2336677777777767789
Q ss_pred EEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChh
Q 015595 273 AVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRE 352 (404)
Q Consensus 273 ~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~ 352 (404)
+||||++++.++.+++.|...++.+..+|++++.++|..+++.|.+|+.+|||||+++++|+|+|++++||++++|.|..
T Consensus 227 ~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~ 306 (591)
T TIGR01389 227 GIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLE 306 (591)
T ss_pred EEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCCCCCceeEEEEeccCcHHHHHHH
Q 015595 353 LYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI 385 (404)
Q Consensus 353 ~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 385 (404)
.|.|++||+||.|+.+.+++++++.|......+
T Consensus 307 ~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 307 SYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred HHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 999999999999999999999998876554443
No 40
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-45 Score=319.52 Aligned_cols=359 Identities=24% Similarity=0.415 Sum_probs=291.9
Q ss_pred ccccccCCCCHHHHHH----------HHHCCCCCCcHHHHHhhhhhhc---------CCcEEEEcCCCCchhhHhHHHHH
Q 015595 32 ITSFDAMGIKDDLLRG----------IYQYGFEKPSAIQQRAVMPIIK---------GRDVIAQAQSGTGKTSMIALTVC 92 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~----------l~~~~~~~~~~~Q~~~~~~~~~---------~~~~iv~a~tGsGKT~~~~~~~~ 92 (404)
...|+.++.++.+... +..+++.++.|.|...++.++. .+++.|.||||||||++|.+++.
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 3446667776666544 7788999999999999888754 47899999999999999999999
Q ss_pred hhhhcC-CCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcC-----CCeEEeChHHHHHHH
Q 015595 93 QTVDTS-SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG-----VHVVSGTPGRVCDMI 166 (404)
Q Consensus 93 ~~~~~~-~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~iiv~T~~~l~~~l 166 (404)
+.+... -+..|++|++|+++|+.|.++.+.++....++.+..+.|..+...+...+.+. .+|+|+||+++.+++
T Consensus 206 Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl 285 (620)
T KOG0350|consen 206 QLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHL 285 (620)
T ss_pred HHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhc
Confidence 999776 34468999999999999999999999999999999999988887777766532 389999999999999
Q ss_pred Hcc---CCCcccceEEeccccccccCcHHHHHHHHhhCC----------------------------------CCceEEE
Q 015595 167 KRK---TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLP----------------------------------PDLQVVL 209 (404)
Q Consensus 167 ~~~---~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~i~ 209 (404)
.+. .+..++++|+||++++++..|...+..++..+. +....++
T Consensus 286 ~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~ 365 (620)
T KOG0350|consen 286 NNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLV 365 (620)
T ss_pred cCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhh
Confidence 854 567889999999999988776655554444332 1223577
Q ss_pred EeeecchHHHHHHHhccCCCeEEEec----CCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHH
Q 015595 210 ISATLPHEILEMTTKFMTDPVKILVK----RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDW 285 (404)
Q Consensus 210 ~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~ 285 (404)
+|||+......+..--++.|....+. .....+..+.+.+...... .+.-.+..++...+..++|+|+++.+.+.+
T Consensus 366 ~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~-~kpl~~~~lI~~~k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 366 FSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPK-FKPLAVYALITSNKLNRTLCFVNSVSSANR 444 (620)
T ss_pred cchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccc-cchHhHHHHHHHhhcceEEEEecchHHHHH
Confidence 78887766555555556666444443 2233344445544444433 377788888998889999999999999999
Q ss_pred HHHHHh----hCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhcccc
Q 015595 286 LTEKMR----GYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRS 361 (404)
Q Consensus 286 l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~ 361 (404)
++..|+ +.+..+..+.|.++...|...++.|..|.+++|||++++++|+|+-+++.||.|++|.+..+|+||+||.
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRT 524 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccc
Confidence 999987 3356677799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEeccCcHHHHHHHHHHHcc
Q 015595 362 GRFGRKGVAINFVKNDDIKILRDIEQYYST 391 (404)
Q Consensus 362 ~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (404)
+|.|+.|.++.+++..+...|..+.+..+.
T Consensus 525 ARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 525 ARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred ccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 999999999999999988877777666555
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.1e-44 Score=356.87 Aligned_cols=332 Identities=20% Similarity=0.279 Sum_probs=245.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC------CCceeEEEEcccHHH
Q 015595 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALILSPTREL 113 (404)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~------~~~~~~lil~p~~~L 113 (404)
+++.+.+.+.+ +|..|+++|.++++.+++|++++++||||||||+++.++++..+... ..+.++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56777777665 78899999999999999999999999999999999999998876432 235679999999999
Q ss_pred HHHHHHHHHH-------H----cccc-CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc----CCCcccce
Q 015595 114 ATQTEKVILA-------I----GDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIK 177 (404)
Q Consensus 114 ~~q~~~~~~~-------~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~----~~~~~~~v 177 (404)
+.|+.+.+.+ + +... ++.+...+|+.....+...+.++++|+|+||+++..++... .+..++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876553 1 1222 67888889998887777777778999999999998777544 35788999
Q ss_pred EEeccccccccCcHHH----HHHHHhhCCCCceEEEEeeecchHHHHHHHhccC-----CCeEEEecCCcc-ccCCceEE
Q 015595 178 LLDESDEMLSRGFKDQ----IYDVYRYLPPDLQVVLISATLPHEILEMTTKFMT-----DPVKILVKRDEL-TLEGIKQF 247 (404)
Q Consensus 178 IiDE~h~~~~~~~~~~----~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~ 247 (404)
|+||+|.+.+...+.. +.++....+...|++++|||+++. ......... .+.......... ....+...
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 9999999887654433 344444444678999999999762 222222211 111111111111 00001000
Q ss_pred E-----EEecCc---hhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhC------CCeEEEecCCCCHHHHHHHH
Q 015595 248 F-----VAVERE---EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY------NFTVSSMHGDMPQKERDAIM 313 (404)
Q Consensus 248 ~-----~~~~~~---~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~ 313 (404)
. ...... ......+..+++. ++++||||+++..|+.++..|+.. +..+..+||+++.++|..++
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 0 000011 1123334444443 568999999999999999999873 35789999999999999999
Q ss_pred HHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCC-CCceeEEEEec
Q 015595 314 GEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF-GRKGVAINFVK 375 (404)
Q Consensus 314 ~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~-g~~~~~~~~~~ 375 (404)
+.|++|..++||||+++++|+|+|++++||+++.|.|...|+||+||+||. |..+.+.++..
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 999999999999999999999999999999999999999999999999986 44444444433
No 42
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.3e-44 Score=352.91 Aligned_cols=332 Identities=16% Similarity=0.224 Sum_probs=256.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhh-hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
.|+++++++.+.+.+++.|+..|+|+|.++++. +++++++++++|||||||+++.++++..+... +.+++|++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 578899999999999999999999999999986 78899999999999999999999998876543 357999999999
Q ss_pred HHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCc
Q 015595 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGF 190 (404)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~ 190 (404)
|+.|+.+.+.++. ..++.+..++|+...... ....++|+|+||+++..++.+. .+..++++|+||+|.+.+...
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 9999999998764 457888888888764332 2245899999999999887754 467889999999999988888
Q ss_pred HHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceE-----EEEEecCc------hhHHH
Q 015595 191 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQ-----FFVAVERE------EWKFD 259 (404)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------~~~~~ 259 (404)
+..+..++..++...|+|++|||+++. .++.. |++... +.. ...+..+.. .+...... .....
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~-~~~---~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAEL-VVS---DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWES 229 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCcc-ccC---CCCCCcceeeEecCCeeeccCcchhcchHHHHH
Confidence 888888888888889999999999763 44443 333221 111 111111110 01111111 11123
Q ss_pred HHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhC---------------------------------CCeEEEecCCCCH
Q 015595 260 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY---------------------------------NFTVSSMHGDMPQ 306 (404)
Q Consensus 260 ~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~~~~~~ 306 (404)
.+.+.++ .++++||||+++..++.++..|... ...+..+|+++++
T Consensus 230 ~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 230 LVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 3444444 3678999999999998777665321 1248899999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE-------ccCC-CChhhhhhhccccCCCC--CceeEEEEecc
Q 015595 307 KERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN-------YDLP-NNRELYIHRIGRSGRFG--RKGVAINFVKN 376 (404)
Q Consensus 307 ~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~-------~~~p-~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~ 376 (404)
.+|..+++.|++|.++|||||+++++|+|+|+.+.||. ++.+ .+..+|.||+||+||.| ..|.+++++.+
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 99999999999999999999999999999999998884 3332 35678999999999975 55999999887
Q ss_pred CcH
Q 015595 377 DDI 379 (404)
Q Consensus 377 ~~~ 379 (404)
++.
T Consensus 388 ~~~ 390 (720)
T PRK00254 388 EEP 390 (720)
T ss_pred cch
Confidence 653
No 43
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-45 Score=326.64 Aligned_cols=375 Identities=31% Similarity=0.454 Sum_probs=324.9
Q ss_pred ccccccccc----CCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC-----C
Q 015595 29 VEAITSFDA----MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----S 99 (404)
Q Consensus 29 ~~~~~~~~~----~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~-----~ 99 (404)
+.++.+|.+ ...++.+++.+...+|..|+|.|.++++-++.+++++.|+|||+|||+++.++++..+... .
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 455566665 3468888899999999999999999999999999999999999999999999999888443 3
Q ss_pred CceeEEEEcccHHHHHHHHHHHHHHc--cccCeeEEEEEcCcchHHHHHH-HhcCCCeEEeChHHHHHHHHcc----CCC
Q 015595 100 REVQALILSPTRELATQTEKVILAIG--DFINIQAHACVGGKSVGEDIRK-LEHGVHVVSGTPGRVCDMIKRK----TLR 172 (404)
Q Consensus 100 ~~~~~lil~p~~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~T~~~l~~~l~~~----~~~ 172 (404)
.+-+++|+.|+++|+.|.+.++.++. ...+.................. ....++++++||.++...+... .+.
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 46789999999999999999999987 4444444444333222221111 1234889999999999998875 466
Q ss_pred cccceEEecccccccc-CcHHHHHHHHhhCC-CCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEE
Q 015595 173 TRAIKLLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA 250 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (404)
.+..+|+||++.+.+. .+..++..++..+. ++..+=++|||.+..+.++++....++..+.+...+.....+.|....
T Consensus 288 ~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF 367 (593)
T KOG0344|consen 288 KVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVF 367 (593)
T ss_pred eeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhhee
Confidence 7788899999999998 88888888888774 456777899999999999999999999988888887777788888888
Q ss_pred ecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHH-hhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 015595 251 VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM-RGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV 329 (404)
Q Consensus 251 ~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 329 (404)
+.....|.-.+.+++...-..+++||+.+.+.|..++..| .--++.+..+||+.+..+|++.++.|+.|++.|||||+.
T Consensus 368 ~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdl 447 (593)
T KOG0344|consen 368 CGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDL 447 (593)
T ss_pred eecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhh
Confidence 8888889999999999888889999999999999999999 455889999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcccccc
Q 015595 330 WARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 403 (404)
Q Consensus 330 ~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
+++|+|+.+++.||.||.|.+...|+||+||.||.|+.|.+++||+..|...+..+.+.+++..-++|.|++.+
T Consensus 448 l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m~~ 521 (593)
T KOG0344|consen 448 LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIMGI 521 (593)
T ss_pred hhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887643
No 44
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=7e-44 Score=339.00 Aligned_cols=352 Identities=19% Similarity=0.261 Sum_probs=276.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC-----CCceeEEEEcccHHHH
Q 015595 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----SREVQALILSPTRELA 114 (404)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~-----~~~~~~lil~p~~~L~ 114 (404)
+++.+.+.+... |..||+.|.++++.+.+|+++++.||||||||+++.++++..+... ..+..+||++|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 688899999888 8899999999999999999999999999999999999999988776 2346899999999999
Q ss_pred HHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc----CCCcccceEEeccccccccCc
Q 015595 115 TQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLDESDEMLSRGF 190 (404)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~----~~~~~~~vIiDE~h~~~~~~~ 190 (404)
+++...++..+...|+.+...+|+++..++.+...++++|+++||+.+.-++... .+.++.+||+||+|.+....-
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 9999999999999999999999999998888888899999999999999887653 578889999999999876643
Q ss_pred H----HHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCC--CeEEEecCCccccCCceEEEEE------ecCchhHH
Q 015595 191 K----DQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTD--PVKILVKRDELTLEGIKQFFVA------VEREEWKF 258 (404)
Q Consensus 191 ~----~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 258 (404)
+ -.+.++....+ ..|.|++|||..+. ....+...+. +..+.-...... ..+.-.... -.......
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k~-~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAKK-LEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCCc-ceEEEEecCCccccccchhHHHH
Confidence 3 33445555545 89999999999764 3333333332 233332222111 111111100 01112245
Q ss_pred HHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCC-CeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCC
Q 015595 259 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN-FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 337 (404)
Q Consensus 259 ~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p 337 (404)
..+.++++++. .+|||+|++..++.++..|++.+ ..+..+||.++.+.|.+++++|++|+.+++|||++++-|||+.
T Consensus 244 ~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 244 ERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 66677777644 79999999999999999999986 7899999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCChhhhhhhccccCCC-CCceeEEEEecc--CcHHHHHHHHHHHccccccCC
Q 015595 338 QVSLVINYDLPNNRELYIHRIGRSGRF-GRKGVAINFVKN--DDIKILRDIEQYYSTQIDEMP 397 (404)
Q Consensus 338 ~~~~vi~~~~p~s~~~~~Q~~GR~~R~-g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 397 (404)
+++.||+++.|.+++.++||+||+|+. |.....+++... +-.....-....++-..+.++
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~ 384 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIK 384 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCC
Confidence 999999999999999999999999975 555555555554 222333334444444444443
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.2e-42 Score=337.36 Aligned_cols=321 Identities=19% Similarity=0.207 Sum_probs=246.9
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHhhhhhhcC------CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 40 IKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 40 l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~------~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
.+..+.+.+.+ ++| .|++.|..+++.+.++ ++.+++||||+|||.+++.+++..+..+ .+++|++||++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~ 511 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTL 511 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHH
Confidence 34445555544 678 6999999999999875 6899999999999999999988877654 46999999999
Q ss_pred HHHHHHHHHHHHccccCeeEEEEEcCcchHHHH---HHHhc-CCCeEEeChHHHHHHHHccCCCcccceEEecccccccc
Q 015595 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDI---RKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSR 188 (404)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~ 188 (404)
|+.|+++.+++.....++++..++++....+.. ..+.. .++|+|+||..+. ..-.+.+++++|+||+|++
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~---~~v~f~~L~llVIDEahrf--- 585 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQ---KDVKFKDLGLLIIDEEQRF--- 585 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhh---CCCCcccCCEEEeeccccc---
Confidence 999999999998877788888888776543332 22333 5899999994331 2235778899999999985
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcC
Q 015595 189 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 268 (404)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 268 (404)
.......+..++..+++++||||+.+....+......++..+..... ....+..++....... ....+...+.
T Consensus 586 --gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~--~R~~V~t~v~~~~~~~-i~~~i~~el~-- 658 (926)
T TIGR00580 586 --GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE--DRLPVRTFVMEYDPEL-VREAIRRELL-- 658 (926)
T ss_pred --chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC--CccceEEEEEecCHHH-HHHHHHHHHH--
Confidence 23334455556678899999999988766665555555544433222 1222333333222211 1222222222
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC--CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEcc
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD 346 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~ 346 (404)
.+++++|||++++.++.+++.|+.. +..+..+||+|+..+|.+++++|++|+.+|||||+++++|+|+|++++||+++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~ 738 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIER 738 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEec
Confidence 3678999999999999999999985 67899999999999999999999999999999999999999999999999998
Q ss_pred CCC-ChhhhhhhccccCCCCCceeEEEEeccC
Q 015595 347 LPN-NRELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 347 ~p~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
.+. +..+|.|+.||+||.|+.|.|++++.+.
T Consensus 739 a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 739 ADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 864 6779999999999999999999999764
No 46
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-42 Score=340.55 Aligned_cols=340 Identities=19% Similarity=0.263 Sum_probs=248.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHH
Q 015595 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (404)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L 113 (404)
.|+++++++.+.+.+...+| .|+++|.++++.+.+++++++++|||||||+++.++++..+..+ .+++|++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~-~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~---~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDF-ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCC-CCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC---CcEEEEechHHH
Confidence 57788999999999999998 59999999999999999999999999999999999988877654 469999999999
Q ss_pred HHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcH
Q 015595 114 ATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFK 191 (404)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~ 191 (404)
+.|.++.+.++. ..+..+...+|+...... ....++|+|+||+++..++.+. .+..++++|+||+|.+.+..++
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 999999998754 457778777777654322 2245899999999998887654 3678899999999998877666
Q ss_pred HHHHHHH---hhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEE-----EecCchhHHHHHHh
Q 015595 192 DQIYDVY---RYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFV-----AVEREEWKFDTLCD 263 (404)
Q Consensus 192 ~~~~~~~---~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 263 (404)
..+..++ +..+.+.|+|++|||+++. .++.. |++... +. ....+..+..... ..+........+..
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~-~~---~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~ 227 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASL-IK---SNFRPVPLKLGILYRKRLILDGYERSQVDINS 227 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCc-cC---CCCCCCCeEEEEEecCeeeecccccccccHHH
Confidence 5555543 3445688999999999763 33333 333211 00 0011111111000 01111101111222
Q ss_pred hhhc--CCCCeEEEEecchhhHHHHHHHHhhCC-------------------------CeEEEecCCCCHHHHHHHHHHH
Q 015595 264 LYDT--LTITQAVIFCNTKRKVDWLTEKMRGYN-------------------------FTVSSMHGDMPQKERDAIMGEF 316 (404)
Q Consensus 264 ~l~~--~~~~k~lIf~~~~~~~~~l~~~l~~~~-------------------------~~~~~~~~~~~~~~r~~~~~~f 316 (404)
++.. ..++++||||++++.++.++..|.... ..+..+|++++..+|..+++.|
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f 307 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHH
Confidence 2221 246789999999999999998886531 2477899999999999999999
Q ss_pred hcCCCcEEEEcCccccCCCCCCCCEEEEcc---------CCCChhhhhhhccccCCCCCc--eeEEEEeccCcHHHHHHH
Q 015595 317 RSGTTRVLITTDVWARGLDVQQVSLVINYD---------LPNNRELYIHRIGRSGRFGRK--GVAINFVKNDDIKILRDI 385 (404)
Q Consensus 317 ~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~---------~p~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~~~~~~~~~ 385 (404)
++|..+|||||+++++|+|+|+... |+.+ .|.|..+|.||+||+||.|.+ |.+++++...+ ....+
T Consensus 308 ~~g~i~VLvaT~~la~Gvnipa~~V-II~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~--~~~~~ 384 (674)
T PRK01172 308 RNRYIKVIVATPTLAAGVNLPARLV-IVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA--SYDAA 384 (674)
T ss_pred HcCCCeEEEecchhhccCCCcceEE-EEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc--cHHHH
Confidence 9999999999999999999998644 4433 246788999999999999854 77888766543 12334
Q ss_pred HHHHc
Q 015595 386 EQYYS 390 (404)
Q Consensus 386 ~~~~~ 390 (404)
++++.
T Consensus 385 ~~~l~ 389 (674)
T PRK01172 385 KKYLS 389 (674)
T ss_pred HHHHc
Confidence 55553
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.8e-41 Score=329.46 Aligned_cols=315 Identities=20% Similarity=0.255 Sum_probs=236.0
Q ss_pred HHHHHCCCCCCcHHHHHhhhhhhcC------CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHH
Q 015595 46 RGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (404)
Q Consensus 46 ~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~ 119 (404)
+.....+| +|++.|+++++.+.++ .+.+++||||||||.+++++++..+.. +.+++|++||++|+.|+++
T Consensus 253 ~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~Q~~~ 328 (681)
T PRK10917 253 KFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAEQHYE 328 (681)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHHHHHH
Confidence 33445677 7999999999999886 378999999999999999999887754 3469999999999999999
Q ss_pred HHHHHccccCeeEEEEEcCcchHHHHH---HHhc-CCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHH
Q 015595 120 VILAIGDFINIQAHACVGGKSVGEDIR---KLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIY 195 (404)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~ 195 (404)
.++++....++++..++|+....++.. .+.. .++|+|+||+.+.+. -.+..++++|+||+|++... ..
T Consensus 329 ~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~---v~~~~l~lvVIDE~Hrfg~~-----qr 400 (681)
T PRK10917 329 NLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD---VEFHNLGLVIIDEQHRFGVE-----QR 400 (681)
T ss_pred HHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc---chhcccceEEEechhhhhHH-----HH
Confidence 999998888899999999987544332 3333 599999999776432 24678899999999986332 22
Q ss_pred HHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEE
Q 015595 196 DVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVI 275 (404)
Q Consensus 196 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lI 275 (404)
..+......+++++||||+.+....+......+... +.........+...+..........+.+...+ ..+.+++|
T Consensus 401 ~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~--i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~--~~g~q~~v 476 (681)
T PRK10917 401 LALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSV--IDELPPGRKPITTVVIPDSRRDEVYERIREEI--AKGRQAYV 476 (681)
T ss_pred HHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEE--EecCCCCCCCcEEEEeCcccHHHHHHHHHHHH--HcCCcEEE
Confidence 223333456889999999987655543322222211 11111112223333332222222223333333 24678999
Q ss_pred Eecchh--------hHHHHHHHHhhC--CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEc
Q 015595 276 FCNTKR--------KVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINY 345 (404)
Q Consensus 276 f~~~~~--------~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~ 345 (404)
||+.++ .++.+++.|... ++.+..+||+++..+|++++++|++|+.+|||||+++++|+|+|++++||++
T Consensus 477 ~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~ 556 (681)
T PRK10917 477 VCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIE 556 (681)
T ss_pred EEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEe
Confidence 999643 456677777765 4689999999999999999999999999999999999999999999999999
Q ss_pred cCCC-ChhhhhhhccccCCCCCceeEEEEecc
Q 015595 346 DLPN-NRELYIHRIGRSGRFGRKGVAINFVKN 376 (404)
Q Consensus 346 ~~p~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 376 (404)
+.|. ..+.+.|+.||+||.|..|.|++++..
T Consensus 557 ~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 557 NAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred CCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 9886 578899999999999999999999953
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.9e-41 Score=338.07 Aligned_cols=319 Identities=17% Similarity=0.182 Sum_probs=248.2
Q ss_pred HHHHHHHHHCCCCCCcHHHHHhhhhhhcC------CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHH
Q 015595 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (404)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~ 115 (404)
.+..+....++| .|++.|.++++.++.+ ++++++++||+|||.+++.++...+.. +.+++|++||++|+.
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~ 663 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQ 663 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHH
Confidence 344455566788 8999999999999986 789999999999999988777665543 456999999999999
Q ss_pred HHHHHHHHHccccCeeEEEEEcCcchHHHHHHH---h-cCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcH
Q 015595 116 QTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFK 191 (404)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~ 191 (404)
|+++.+++.....++.+..++++.+..++...+ . ..++|+|+||+.+. ..-.+..++++|+||+|++..
T Consensus 664 Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~---~~v~~~~L~lLVIDEahrfG~---- 736 (1147)
T PRK10689 664 QHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ---SDVKWKDLGLLIVDEEHRFGV---- 736 (1147)
T ss_pred HHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh---CCCCHhhCCEEEEechhhcch----
Confidence 999999987666678888888776665554333 2 35899999996442 122467889999999999622
Q ss_pred HHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCC
Q 015595 192 DQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 271 (404)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 271 (404)
.....++.++.+.+++++|||+.+....+....+.++..+...... ...+.+..........+...+.++. .++
T Consensus 737 -~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el~---r~g 810 (1147)
T PRK10689 737 -RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREIL---RGG 810 (1147)
T ss_pred -hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHHh---cCC
Confidence 2234456667789999999999888777777777777655543222 2234444433332222333333333 357
Q ss_pred eEEEEecchhhHHHHHHHHhhC--CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCC-
Q 015595 272 QAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP- 348 (404)
Q Consensus 272 k~lIf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p- 348 (404)
+++|||++.+.++.+++.|+.. +..+..+||+|+..+|.+++.+|++|+.+|||||+++++|+|+|++++||+.+..
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~ 890 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCC
Confidence 8999999999999999999887 6789999999999999999999999999999999999999999999999976543
Q ss_pred CChhhhhhhccccCCCCCceeEEEEeccC
Q 015595 349 NNRELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 349 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
.+..+|.|+.||+||.|+.|.|++++.+.
T Consensus 891 fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 46788999999999999999999998654
No 49
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.5e-42 Score=313.57 Aligned_cols=330 Identities=21% Similarity=0.302 Sum_probs=257.5
Q ss_pred HHHHH-CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 46 RGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 46 ~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
..|++ +|+..+++-|.+++..+++++++++..|||.|||++|.+|++-. ...+|+|.|..+|.+++.+.++..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHHHc
Confidence 44554 68999999999999999999999999999999999999988754 125999999999999999999876
Q ss_pred ccccCeeEEEEEcCcchHHHHH---HHhc-CCCeEEeChHHHHHHH--HccCCCcccceEEeccccccccC--cHHHHH-
Q 015595 125 GDFINIQAHACVGGKSVGEDIR---KLEH-GVHVVSGTPGRVCDMI--KRKTLRTRAIKLLDESDEMLSRG--FKDQIY- 195 (404)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~iiv~T~~~l~~~l--~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~- 195 (404)
+ +....+.+..+..+... .+.. ..++++.+||++..-. +.-.-..+.+++|||||.++.++ |++...
T Consensus 81 G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 81 G----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred C----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHH
Confidence 5 66666666544433322 2222 4799999999876321 11124456889999999999885 655544
Q ss_pred --HHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeE-EEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCe
Q 015595 196 --DVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVK-ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ 272 (404)
Q Consensus 196 --~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k 272 (404)
.+...++ +++++++|||.++.+...+...+..... +.. ...+.+++........+...+...+.+ ......+.
T Consensus 157 lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~--~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~ 232 (590)
T COG0514 157 LGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFR--GSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKS 232 (590)
T ss_pred HHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEE--ecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCC
Confidence 4455555 7789999999999988887766553322 222 223334443333332222223333333 22556677
Q ss_pred EEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChh
Q 015595 273 AVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRE 352 (404)
Q Consensus 273 ~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~ 352 (404)
.||||.|++.++.+++.|...|+.+..+|++++.++|+.+.++|..++..|+|||.++++|||-|++++|||+++|.|..
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHH
Q 015595 353 LYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYY 389 (404)
Q Consensus 353 ~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 389 (404)
.|.|-+|||||+|....+++++.+.|......+.+..
T Consensus 313 sYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred HHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 9999999999999999999999999987666665554
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=7.3e-41 Score=323.36 Aligned_cols=317 Identities=21% Similarity=0.260 Sum_probs=233.1
Q ss_pred HHHHHHHHCCCCCCcHHHHHhhhhhhcC------CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHH
Q 015595 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (404)
Q Consensus 43 ~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q 116 (404)
.+.+.+...+| +|++.|+++++.++++ .+.+++||||||||.+++++++..+..+ .+++|++||++|+.|
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g---~qvlilaPT~~LA~Q 299 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG---YQVALMAPTEILAEQ 299 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC---CcEEEECCHHHHHHH
Confidence 34456667788 8999999999999875 2579999999999999999988877654 469999999999999
Q ss_pred HHHHHHHHccccCeeEEEEEcCcchHHHH---HHHh-cCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHH
Q 015595 117 TEKVILAIGDFINIQAHACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKD 192 (404)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~ 192 (404)
+++.++++....++++..++|+.....+. ..+. ..++|+|+||+.+.+ ...+..++++|+||+|++.... ..
T Consensus 300 ~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~---~~~~~~l~lvVIDEaH~fg~~q-r~ 375 (630)
T TIGR00643 300 HYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE---KVEFKRLALVIIDEQHRFGVEQ-RK 375 (630)
T ss_pred HHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc---cccccccceEEEechhhccHHH-HH
Confidence 99999999888889999999987765432 2222 357999999987753 2346788999999999864332 11
Q ss_pred HHHHHHhhCC--CCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhc-CC
Q 015595 193 QIYDVYRYLP--PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT-LT 269 (404)
Q Consensus 193 ~~~~~~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ 269 (404)
.+..... ..+++++||||+.+....+... ++...............+...+. .. ..+...+..+.+. ..
T Consensus 376 ---~l~~~~~~~~~~~~l~~SATp~prtl~l~~~--~~l~~~~i~~~p~~r~~i~~~~~--~~-~~~~~~~~~i~~~l~~ 447 (630)
T TIGR00643 376 ---KLREKGQGGFTPHVLVMSATPIPRTLALTVY--GDLDTSIIDELPPGRKPITTVLI--KH-DEKDIVYEFIEEEIAK 447 (630)
T ss_pred ---HHHHhcccCCCCCEEEEeCCCCcHHHHHHhc--CCcceeeeccCCCCCCceEEEEe--Cc-chHHHHHHHHHHHHHh
Confidence 2222222 2678999999987754443321 21111111111111122222222 11 1122222222222 24
Q ss_pred CCeEEEEecch--------hhHHHHHHHHhhC--CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCC
Q 015595 270 ITQAVIFCNTK--------RKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV 339 (404)
Q Consensus 270 ~~k~lIf~~~~--------~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~ 339 (404)
+.+++|||+.. ..++.+++.|... ++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 448 g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v 527 (630)
T TIGR00643 448 GRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNA 527 (630)
T ss_pred CCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCC
Confidence 57899999876 3456677777653 6789999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCC-ChhhhhhhccccCCCCCceeEEEEec
Q 015595 340 SLVINYDLPN-NRELYIHRIGRSGRFGRKGVAINFVK 375 (404)
Q Consensus 340 ~~vi~~~~p~-s~~~~~Q~~GR~~R~g~~~~~~~~~~ 375 (404)
++||+++.|. +.+.+.|+.||+||.|+.|.|++++.
T Consensus 528 ~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 528 TVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999885 67889999999999999999999993
No 51
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=6.2e-41 Score=320.70 Aligned_cols=306 Identities=22% Similarity=0.271 Sum_probs=234.3
Q ss_pred CCCCCCcHHHHHhhhhhhcCC-cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHcccc-
Q 015595 51 YGFEKPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI- 128 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~-~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~- 128 (404)
.||. |+|+|.++++.++.|+ ++++.+|||||||.++.++.+..........+.++++|+++|+.|.++.++++++.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 5885 9999999999999998 577789999999986655554332222222355668899999999999999988654
Q ss_pred ----------------------CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHc--------------cCCC
Q 015595 129 ----------------------NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--------------KTLR 172 (404)
Q Consensus 129 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--------------~~~~ 172 (404)
++++..++||.....++..+..+++|+|+|++.+.+-.-. ..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~ 170 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLG 170 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhc
Confidence 4788999999999899999888999999997655431110 0146
Q ss_pred cccceEEeccccccccCcHHHHHHHHhhC--CC---CceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEE
Q 015595 173 TRAIKLLDESDEMLSRGFKDQIYDVYRYL--PP---DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQF 247 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~--~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (404)
...++|+|||| +..+|...+..+++.+ ++ +.|+++||||++.+.......+..++..+.+.........+.++
T Consensus 171 ~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~ 248 (844)
T TIGR02621 171 QDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL 248 (844)
T ss_pred cceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEE
Confidence 68899999999 5678899999998864 33 26999999999988777766666666655554444444555554
Q ss_pred EEEecCchhHHHH----HHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHH-----HHHHHHhc
Q 015595 248 FVAVEREEWKFDT----LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERD-----AIMGEFRS 318 (404)
Q Consensus 248 ~~~~~~~~~~~~~----l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~ 318 (404)
+ ..... .+... +..++. ..++++|||||+++.++.+++.|++.++ ..+||++++.+|. .+++.|++
T Consensus 249 v-~v~~e-~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~ 323 (844)
T TIGR02621 249 V-PPSDE-KFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLP 323 (844)
T ss_pred E-ecChH-HHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhc
Confidence 2 22222 23322 222222 3467899999999999999999998876 8999999999999 77888986
Q ss_pred ----CC-------CcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCc
Q 015595 319 ----GT-------TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK 367 (404)
Q Consensus 319 ----~~-------~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~ 367 (404)
+. ..|||||+++++|+|++. ++||....| ...|+||+||+||.|+.
T Consensus 324 ~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 324 QMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGEL 380 (844)
T ss_pred cccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCC
Confidence 43 679999999999999986 888876554 68999999999999875
No 52
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.9e-40 Score=288.44 Aligned_cols=326 Identities=20% Similarity=0.250 Sum_probs=241.3
Q ss_pred CCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeE
Q 015595 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (404)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~ 132 (404)
..++|.||..+....+.+ +++++.|||.|||+++++.+...+...++ ++|+++||+.|+.|..+.++++.......+
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i 89 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCChhhe
Confidence 347999999999887766 89999999999999999988888876654 799999999999999999999987777888
Q ss_pred EEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEE
Q 015595 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 210 (404)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 210 (404)
..++|.....++...+. ..+|+++||+.+.+-+..+ .+..+.++||||||+.......-.+...+-...+++.+++|
T Consensus 90 ~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgL 168 (542)
T COG1111 90 AALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGL 168 (542)
T ss_pred eeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEE
Confidence 89999888766655544 4899999999999988877 45567888999999975554333444433444568889999
Q ss_pred eeecchHHHH---HHHhccCCCeEEEecCCc-ccc--CCceEEE------------------------------------
Q 015595 211 SATLPHEILE---MTTKFMTDPVKILVKRDE-LTL--EGIKQFF------------------------------------ 248 (404)
Q Consensus 211 SAT~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~------------------------------------ 248 (404)
||||..+... .+..+.-+.+.+..+... ..+ ......|
T Consensus 169 TASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~ 248 (542)
T COG1111 169 TASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESS 248 (542)
T ss_pred ecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceecc
Confidence 9998433211 111111111111100000 000 0000000
Q ss_pred --------------------------------------------------------------------------------
Q 015595 249 -------------------------------------------------------------------------------- 248 (404)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (404)
T Consensus 249 ~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~ 328 (542)
T COG1111 249 SPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADP 328 (542)
T ss_pred CcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcCh
Confidence
Q ss_pred ------------EEecCchhHHHHHHhhhh----cCCCCeEEEEecchhhHHHHHHHHhhCCCeEE-Ee--------cCC
Q 015595 249 ------------VAVEREEWKFDTLCDLYD----TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVS-SM--------HGD 303 (404)
Q Consensus 249 ------------~~~~~~~~~~~~l~~~l~----~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~-~~--------~~~ 303 (404)
....-...|++.+.++++ ...+.++|||++.+++|+.+.+.|...+..+. .+ ..+
T Consensus 329 ~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~G 408 (542)
T COG1111 329 YFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKG 408 (542)
T ss_pred hhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccc
Confidence 000000113444444333 33446899999999999999999999887663 22 246
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHH
Q 015595 304 MPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILR 383 (404)
Q Consensus 304 ~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 383 (404)
|+++++.+++++|++|+.+|||||++.++|+|+|.++.||+|++..|...++||.||+||. +.|.+++++.+++.+..+
T Consensus 409 MsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrdeay 487 (542)
T COG1111 409 MSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRDEAY 487 (542)
T ss_pred cCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 789999999988554433
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=8.2e-40 Score=330.27 Aligned_cols=321 Identities=19% Similarity=0.287 Sum_probs=231.2
Q ss_pred EEcCCCCchhhHhHHHHHhhhhcC----------CCceeEEEEcccHHHHHHHHHHHHHHc------------cccCeeE
Q 015595 75 AQAQSGTGKTSMIALTVCQTVDTS----------SREVQALILSPTRELATQTEKVILAIG------------DFINIQA 132 (404)
Q Consensus 75 v~a~tGsGKT~~~~~~~~~~~~~~----------~~~~~~lil~p~~~L~~q~~~~~~~~~------------~~~~~~~ 132 (404)
|++|||||||+++.++++..+... ..+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999998877542 235789999999999999999886421 1246888
Q ss_pred EEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEeccccccccC----cHHHHHHHHhhCCCCc
Q 015595 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDESDEMLSRG----FKDQIYDVYRYLPPDL 205 (404)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE~h~~~~~~----~~~~~~~~~~~~~~~~ 205 (404)
...+|+.+..++.+.+.+.++|+|+||+++..++.+. .+.++++|||||+|.+.+.. +...+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999888877777778999999999999887543 57889999999999998654 3345666666677789
Q ss_pred eEEEEeeecchHHHHHHHhccC-CCeEEEecCCccccCCceEEEEEecCch-------------------hHHHHH-Hhh
Q 015595 206 QVVLISATLPHEILEMTTKFMT-DPVKILVKRDELTLEGIKQFFVAVEREE-------------------WKFDTL-CDL 264 (404)
Q Consensus 206 ~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~l-~~~ 264 (404)
|+|++|||+++. .+....+.. .+..+.. ........+... ....+.. .....+ ..+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVN-PPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEEC-CCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999874 444433322 2444432 222111222211 1111100 000111 122
Q ss_pred hhc-CCCCeEEEEecchhhHHHHHHHHhhCC---------------------------------CeEEEecCCCCHHHHH
Q 015595 265 YDT-LTITQAVIFCNTKRKVDWLTEKMRGYN---------------------------------FTVSSMHGDMPQKERD 310 (404)
Q Consensus 265 l~~-~~~~k~lIf~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~~r~ 310 (404)
+.. ....++||||||+..|+.++..|++.. ..+..+||+++.++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 221 235689999999999999999987631 1256899999999999
Q ss_pred HHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCC-CCceeEEEEeccCc--HHHHHHHHH
Q 015595 311 AIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF-GRKGVAINFVKNDD--IKILRDIEQ 387 (404)
Q Consensus 311 ~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~-g~~~~~~~~~~~~~--~~~~~~~~~ 387 (404)
.+++.|++|++++||||++++.|||+++++.||+++.|.|+.+|+||+||+||. |..+.++++..+.+ .....-++.
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~~ve~ 397 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVEC 397 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 33345554333221 112223556
Q ss_pred HHccccccCCc
Q 015595 388 YYSTQIDEMPM 398 (404)
Q Consensus 388 ~~~~~~~~~~~ 398 (404)
+++..++.+..
T Consensus 398 ~l~g~iE~~~~ 408 (1490)
T PRK09751 398 MFAGRLENLTP 408 (1490)
T ss_pred HhcCCCCccCC
Confidence 66666665443
No 54
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.8e-40 Score=310.08 Aligned_cols=300 Identities=15% Similarity=0.147 Sum_probs=217.5
Q ss_pred CCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEE
Q 015595 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~ 133 (404)
..|+++|.++++.++.+++.++++|||+|||.++...+...+... ..++||++|+++|+.||.+.++++.......+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~--~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENY--EGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 489999999999999999999999999999987765433333322 237999999999999999999998755444554
Q ss_pred EEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeee
Q 015595 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 213 (404)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 213 (404)
.+.+|.... .+.+|+|+|++.+.+... ..++.++++|+||||++.... +..++..+++..+++++|||
T Consensus 191 ~i~~g~~~~-------~~~~I~VaT~qsl~~~~~-~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~~lGLTAT 258 (501)
T PHA02558 191 KIYSGTAKD-------TDAPIVVSTWQSAVKQPK-EWFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKFKFGLTGS 258 (501)
T ss_pred EEecCcccC-------CCCCEEEeeHHHHhhchh-hhccccCEEEEEchhcccchh----HHHHHHhhhccceEEEEecc
Confidence 555554332 347899999999876543 246788999999999987644 44555556667789999999
Q ss_pred cchHHHHH--HHhccCCCeEEEecCCcccc----CCceEE----------------------EEEecCchhHHHHHHhhh
Q 015595 214 LPHEILEM--TTKFMTDPVKILVKRDELTL----EGIKQF----------------------FVAVEREEWKFDTLCDLY 265 (404)
Q Consensus 214 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~----------------------~~~~~~~~~~~~~l~~~l 265 (404)
+.+..... ....++.... ......... ...... +..+.....+...+..++
T Consensus 259 p~~~~~~~~~~~~~fG~i~~-~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~ 337 (501)
T PHA02558 259 LRDGKANILQYVGLFGDIFK-PVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLA 337 (501)
T ss_pred CCCccccHHHHHHhhCCceE-EecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHH
Confidence 96532111 1112222111 110000000 000000 000111112333333333
Q ss_pred hc--CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-CccccCCCCCCCCEE
Q 015595 266 DT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT-DVWARGLDVQQVSLV 342 (404)
Q Consensus 266 ~~--~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t-~~~~~Gid~p~~~~v 342 (404)
.. ..+.+++|||.+.++++.+++.|+..+..+..+||+++.++|..+++.|++|...+|||| +.+++|+|+|++++|
T Consensus 338 ~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~v 417 (501)
T PHA02558 338 LKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHV 417 (501)
T ss_pred HHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEE
Confidence 22 235678999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred EEccCCCChhhhhhhccccCCCCCce
Q 015595 343 INYDLPNNRELYIHRIGRSGRFGRKG 368 (404)
Q Consensus 343 i~~~~p~s~~~~~Q~~GR~~R~g~~~ 368 (404)
|+++++.|...|+|++||++|.+..+
T Consensus 418 Il~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 418 IFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEecCCcchhhhhhhhhccccCCCCC
Confidence 99999999999999999999986554
No 55
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.5e-40 Score=293.39 Aligned_cols=339 Identities=20% Similarity=0.271 Sum_probs=270.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhh-hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
+..+.+++++++...+-++..|+..+.|.|.-++++ +++|++.+|.++|+||||++.-++-+..+..++ .+.||++|
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g--~KmlfLvP 269 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGG--KKMLFLVP 269 (830)
T ss_pred ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCC--CeEEEEeh
Confidence 445788999999999999999999999999999987 889999999999999999999988887776643 36999999
Q ss_pred cHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHH----HHHHhcCCCeEEeChHHHHHHHHc-cCCCcccceEEecccc
Q 015595 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGED----IRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLDESDE 184 (404)
Q Consensus 110 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~vIiDE~h~ 184 (404)
..+|++|.+++|++-...+++.+..-.|....... ........+|+|+|++-+..++.. ..+.+++.||+||+|.
T Consensus 270 LVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHt 349 (830)
T COG1202 270 LVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHT 349 (830)
T ss_pred hHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeee
Confidence 99999999999998667888887666654322211 122234589999999999999987 4788999999999999
Q ss_pred ccccCcHHHHHHH---HhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHH
Q 015595 185 MLSRGFKDQIYDV---YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTL 261 (404)
Q Consensus 185 ~~~~~~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (404)
+.+..-+..+..+ ++++-+..|.|++|||..++ .++.+.+...++.+. ..+..+..+.....+...|.+.+
T Consensus 350 L~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-----~RPVplErHlvf~~~e~eK~~ii 423 (830)
T COG1202 350 LEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-----ERPVPLERHLVFARNESEKWDII 423 (830)
T ss_pred ccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec-----CCCCChhHeeeeecCchHHHHHH
Confidence 8776534333322 23333589999999999776 566665544433322 22334556666667666788888
Q ss_pred HhhhhcC--------CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccC
Q 015595 262 CDLYDTL--------TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 333 (404)
Q Consensus 262 ~~~l~~~--------~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~G 333 (404)
..+.+.. -.+++|||++|+..|.++++.|...|+++..+|++++..+|+.+...|.++++.++|+|-+++.|
T Consensus 424 ~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AG 503 (830)
T COG1202 424 ARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAG 503 (830)
T ss_pred HHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcC
Confidence 8877642 12579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccC-----CCChhhhhhhccccCCCC--CceeEEEEeccCc
Q 015595 334 LDVQQVSLVINYDL-----PNNRELYIHRIGRSGRFG--RKGVAINFVKNDD 378 (404)
Q Consensus 334 id~p~~~~vi~~~~-----p~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~ 378 (404)
+|+|.- .||+-++ ..|+..|.||+|||||.+ ..|.+++++.+.-
T Consensus 504 VDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 504 VDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred CCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 999954 3443322 368999999999999986 4599999998763
No 56
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-41 Score=271.04 Aligned_cols=331 Identities=37% Similarity=0.693 Sum_probs=291.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHH
Q 015595 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (404)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L 113 (404)
-|.++-+.+.+.+++-+.||..|...|.+++|...-|.+++.+|..|.|||.++.++.++.+........++++|.+++|
T Consensus 43 gfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrel 122 (387)
T KOG0329|consen 43 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTREL 122 (387)
T ss_pred chhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHH
Confidence 48888899999999999999999999999999988899999999999999999999999998888778889999999999
Q ss_pred HHHHHHHHHHHcccc-CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEecccccccc-C
Q 015595 114 ATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSR-G 189 (404)
Q Consensus 114 ~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~-~ 189 (404)
+-|...++.++.++. +.++.+..||.........+.+.+.|+|+||++++.+.++. .+......|+|||+.+++. .
T Consensus 123 afqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lD 202 (387)
T KOG0329|consen 123 AFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLD 202 (387)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHH
Confidence 999999999988776 68899999999887777777788999999999999999876 4567788899999987765 5
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCC-ccccCCceEEEEEecCchhHHHHHHhhhhcC
Q 015595 190 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 268 (404)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 268 (404)
..+.+..+.+..|...|++.+|||++.+++..+.+++.+|..+..+.+ .....+++++|..+...+ |...+.+++...
T Consensus 203 MrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e-KNrkl~dLLd~L 281 (387)
T KOG0329|consen 203 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE-KNRKLNDLLDVL 281 (387)
T ss_pred HHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh-hhhhhhhhhhhh
Confidence 778899999999999999999999999999999999999999888765 466788999988887665 666677777666
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP 348 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p 348 (404)
.-..++||+.|... + + | ..+ +|||+..++|+|+..++.++.||.|
T Consensus 282 eFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp 326 (387)
T KOG0329|consen 282 EFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMP 326 (387)
T ss_pred hhcceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhccccCcccceeeeccCCC
Confidence 66889999988554 0 0 2 123 8899999999999999999999999
Q ss_pred CChhhhhhhccccCCCCCceeEEEEeccC-cHHHHHHHHHHHccccccCCccc
Q 015595 349 NNRELYIHRIGRSGRFGRKGVAINFVKND-DIKILRDIEQYYSTQIDEMPMNV 400 (404)
Q Consensus 349 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
.+..+|++|.||+||.|..|.++.|++.. +...+..++.-++..+.++|..+
T Consensus 327 ~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpdei 379 (387)
T KOG0329|consen 327 EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDEI 379 (387)
T ss_pred CCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCccc
Confidence 99999999999999999999999999876 77888899999999999999764
No 57
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=5.5e-38 Score=316.16 Aligned_cols=283 Identities=19% Similarity=0.271 Sum_probs=218.0
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|+ .|+++|..+++.++.|++++++||||+|||..+++ +...+.. .+.+++|++||++|+.|+.+.+++++...++
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~-~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLV-MSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHH-HHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 366 89999999999999999999999999999965443 3333322 3567999999999999999999999888888
Q ss_pred eEEEEEcCcch-----HHHHHHHh-cCCCeEEeChHHHHHHHHccCCCcccceEEeccccccc-----------cCcH-H
Q 015595 131 QAHACVGGKSV-----GEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLS-----------RGFK-D 192 (404)
Q Consensus 131 ~~~~~~~~~~~-----~~~~~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~-----------~~~~-~ 192 (404)
.+..+.++... ......+. ..++|+|+||+++.+++.......++++|+||||+++. .+|. .
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~ 232 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEE 232 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHH
Confidence 77777665431 12223333 35899999999999988754556689999999999885 3443 4
Q ss_pred HHHHHHhhCCC------------------------CceEEEEeeecchH-HHHHHHhccCCCeEEEecCCccccCCceEE
Q 015595 193 QIYDVYRYLPP------------------------DLQVVLISATLPHE-ILEMTTKFMTDPVKILVKRDELTLEGIKQF 247 (404)
Q Consensus 193 ~~~~~~~~~~~------------------------~~~~i~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (404)
.+..+++.++. ..|++++|||+++. ... ..+.++..+.+........++.+.
T Consensus 233 ~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~~ 309 (1176)
T PRK09401 233 DIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLRNIVDS 309 (1176)
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccCCceEE
Confidence 55566655543 67899999999864 332 123344444444444555677777
Q ss_pred EEEecCchhHHHHHHhhhhcCCCCeEEEEecchhh---HHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 015595 248 FVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRK---VDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVL 324 (404)
Q Consensus 248 ~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 324 (404)
+.... .+...+..+++... .++||||++... ++.+++.|+..|+.+..+||++ ...+++|++|+.+||
T Consensus 310 yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VL 380 (1176)
T PRK09401 310 YIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVL 380 (1176)
T ss_pred EEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEE
Confidence 76554 36667777776654 579999999777 9999999999999999999998 234599999999999
Q ss_pred EE----cCccccCCCCCC-CCEEEEccCCC
Q 015595 325 IT----TDVWARGLDVQQ-VSLVINYDLPN 349 (404)
Q Consensus 325 v~----t~~~~~Gid~p~-~~~vi~~~~p~ 349 (404)
|| |+.+++|+|+|+ ++.||+|+.|.
T Consensus 381 Vatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 381 VGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred EEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 99 588999999999 89999998774
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5.4e-38 Score=299.02 Aligned_cols=316 Identities=20% Similarity=0.248 Sum_probs=228.5
Q ss_pred cHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHH---------HHhhhh---cCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALT---------VCQTVD---TSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~---------~~~~~~---~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
-..|+++++.+.+++++++.|+||||||.+...+ .+..+. ......++++++|+++|+.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999874322 222221 1333457999999999999999998775
Q ss_pred ccc---cCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhC
Q 015595 125 GDF---INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYL 201 (404)
Q Consensus 125 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~ 201 (404)
... .+..+....|+... ..........+++++|+.. ....+..++++|+||+|+..... ..+..+++..
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-----~l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~ 317 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-----TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKH 317 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-----cccccccCCEEEccccccCccch--hHHHHHHHHh
Confidence 543 35667778888763 2112222357899999752 12357788999999999976654 3444444433
Q ss_pred -CCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecC---------chhHHHHHHhhhhc--CC
Q 015595 202 -PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER---------EEWKFDTLCDLYDT--LT 269 (404)
Q Consensus 202 -~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~l~~--~~ 269 (404)
+...|+++||||++.+...+ ..++.++..+.+... ....+.+.+..... ...+...+..+... ..
T Consensus 318 ~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~ 394 (675)
T PHA02653 318 IDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPK 394 (675)
T ss_pred hhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhccc
Confidence 33458999999998876655 577777776665432 23445555543221 11122222222221 23
Q ss_pred CCeEEEEecchhhHHHHHHHHhhC--CCeEEEecCCCCHHHHHHHHHHH-hcCCCcEEEEcCccccCCCCCCCCEEEEcc
Q 015595 270 ITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEF-RSGTTRVLITTDVWARGLDVQQVSLVINYD 346 (404)
Q Consensus 270 ~~k~lIf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~ 346 (404)
++++|||+++..+++.+++.|.+. ++.+..+||++++. ++.+++| ++|+.+|||||+++++|+|+|++++||+++
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G 472 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTG 472 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECC
Confidence 468999999999999999999887 68999999999874 4566676 689999999999999999999999999998
Q ss_pred ---CCC---------ChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHH
Q 015595 347 ---LPN---------NRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 386 (404)
Q Consensus 347 ---~p~---------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 386 (404)
.|. |.++|.||.||+||. ++|.|+.++++++...+.++.
T Consensus 473 ~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 473 RVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred CccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 454 788999999999999 789999999988764444444
No 59
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=306.06 Aligned_cols=331 Identities=19% Similarity=0.249 Sum_probs=244.8
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHhhhhhhc-CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHH
Q 015595 39 GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (404)
Q Consensus 39 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~ 117 (404)
.+++.+.+.++..++.++++.|+.++..... ++|+++++|||||||++++++++..+.++ +.+++|+||+++|+.+.
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek 92 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEK 92 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHH
Confidence 3677888888888998999999999887655 49999999999999999999999998876 45799999999999999
Q ss_pred HHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHH
Q 015595 118 EKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIY 195 (404)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~ 195 (404)
+++++ -...+|+++...+|+.....+ ...+++|+|+|||++..++.+. .+..++++|+||+|.+.+..-+..+.
T Consensus 93 ~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE 168 (766)
T COG1204 93 YEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLE 168 (766)
T ss_pred HHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceeh
Confidence 99998 334678999999998875543 2346999999999999888775 35678999999999988774444444
Q ss_pred HHHhhC---CCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCc-cccCCceEEEEEecCch------hHHHHHHhhh
Q 015595 196 DVYRYL---PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE-LTLEGIKQFFVAVEREE------WKFDTLCDLY 265 (404)
Q Consensus 196 ~~~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~l~~~l 265 (404)
.+...+ ....|++++|||+++. .+...+...++..-...... .........+....... .....+..++
T Consensus 169 ~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~ 247 (766)
T COG1204 169 SIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVL 247 (766)
T ss_pred hHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHH
Confidence 443333 3348999999999884 44444444443311111111 11112222222222111 1122222222
Q ss_pred hc-CCCCeEEEEecchhhHHHHHHHHhhC---------------------C----------------CeEEEecCCCCHH
Q 015595 266 DT-LTITQAVIFCNTKRKVDWLTEKMRGY---------------------N----------------FTVSSMHGDMPQK 307 (404)
Q Consensus 266 ~~-~~~~k~lIf~~~~~~~~~l~~~l~~~---------------------~----------------~~~~~~~~~~~~~ 307 (404)
.. ..+++++|||+|+..+...++.+... . ..+.++|++++.+
T Consensus 248 ~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~ 327 (766)
T COG1204 248 ESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPRE 327 (766)
T ss_pred HHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHH
Confidence 22 24679999999999999888888731 0 1267899999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEE----Ecc-----CCCChhhhhhhccccCCCCCc--eeEEEEecc
Q 015595 308 ERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVI----NYD-----LPNNRELYIHRIGRSGRFGRK--GVAINFVKN 376 (404)
Q Consensus 308 ~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi----~~~-----~p~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~ 376 (404)
+|..+.+.|+.|.++||+||+++..|+|+|.-+.+| .++ .+.+..+++|++|||||.|-+ |.++++.+.
T Consensus 328 ~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~ 407 (766)
T COG1204 328 DRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATS 407 (766)
T ss_pred HHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecC
Confidence 999999999999999999999999999999766665 344 356788999999999999854 777777733
No 60
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.8e-37 Score=299.41 Aligned_cols=306 Identities=17% Similarity=0.281 Sum_probs=233.0
Q ss_pred HHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHH-HccccCeeEEEEE
Q 015595 58 AIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHACV 136 (404)
Q Consensus 58 ~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~-~~~~~~~~~~~~~ 136 (404)
.+-.+++..+.++++++++|+||||||+++.+++++... .+.+++++.|+++++.|..+.+.+ ++...+..+....
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~v 81 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRV 81 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEE
Confidence 344566777778889999999999999999999887653 234799999999999999998864 4444555555544
Q ss_pred cCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc-CCCcccceEEecccc-ccccCcHH-HHHHHHhhCCCCceEEEEeee
Q 015595 137 GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDE-MLSRGFKD-QIYDVYRYLPPDLQVVLISAT 213 (404)
Q Consensus 137 ~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~-~~~~~~~~-~~~~~~~~~~~~~~~i~~SAT 213 (404)
.+... ......|+|+|++.+.+.+... .+..++++||||+|. ..+..+.- .+..+...++++.|+|+||||
T Consensus 82 r~~~~------~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 82 RGENK------VSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred ccccc------cCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 43321 2345789999999999988754 678899999999995 55555433 345566667788999999999
Q ss_pred cchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhH----HHHHHhhhhcCCCCeEEEEecchhhHHHHHHH
Q 015595 214 LPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK----FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEK 289 (404)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~ 289 (404)
++... +..++.++..+......+ .+.++|......... ...+..++.. ..+++|||+++..+++.+++.
T Consensus 156 l~~~~---l~~~l~~~~vI~~~gr~~---pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~ 228 (819)
T TIGR01970 156 LDGER---LSSLLPDAPVVESEGRSF---PVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQ 228 (819)
T ss_pred CCHHH---HHHHcCCCcEEEecCcce---eeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHH
Confidence 98753 345665544444433322 244444443322211 2234444443 357899999999999999999
Q ss_pred Hhh---CCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCC-----------------
Q 015595 290 MRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPN----------------- 349 (404)
Q Consensus 290 l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~----------------- 349 (404)
|++ .++.+..+||+++.++|..+++.|++|..+|||||+++++|+|+|++++||+++.+.
T Consensus 229 L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 308 (819)
T TIGR01970 229 LAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVR 308 (819)
T ss_pred HHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEE
Confidence 987 378899999999999999999999999999999999999999999999999999864
Q ss_pred -ChhhhhhhccccCCCCCceeEEEEeccCcHH
Q 015595 350 -NRELYIHRIGRSGRFGRKGVAINFVKNDDIK 380 (404)
Q Consensus 350 -s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 380 (404)
|-.++.||.||+||. ++|.||.++++++..
T Consensus 309 iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 309 ISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred ECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 345689999999999 799999999986543
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.9e-37 Score=283.41 Aligned_cols=298 Identities=18% Similarity=0.180 Sum_probs=205.9
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchH---------
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVG--------- 142 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 142 (404)
++++.+|||||||.+++++++..+.. ..+.+++|++|+++|+.|+.+.+..+... .+...+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 47899999999999999999887654 34467999999999999999999986422 333344332210
Q ss_pred ---HHHHHHh------cCCCeEEeChHHHHHHHHccC--------CCcccceEEeccccccccCcHHHHHHHHhhCC-CC
Q 015595 143 ---EDIRKLE------HGVHVVSGTPGRVCDMIKRKT--------LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLP-PD 204 (404)
Q Consensus 143 ---~~~~~~~------~~~~iiv~T~~~l~~~l~~~~--------~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~-~~ 204 (404)
....... ...+|+++||+++...+.... .-..+++|+||+|.+....+.. +..+++.++ .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 0000110 136799999999987766521 1123789999999987754333 444444333 46
Q ss_pred ceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEE-EecCchhHHHHHHhhhhc-CCCCeEEEEecchhh
Q 015595 205 LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFV-AVEREEWKFDTLCDLYDT-LTITQAVIFCNTKRK 282 (404)
Q Consensus 205 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~-~~~~k~lIf~~~~~~ 282 (404)
.|+++||||+++.+..+.......+........... ....+.+. .......+...+..+++. ..++++||||++.++
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 889999999997776666554332111111111000 00112221 122222344555555543 246799999999999
Q ss_pred HHHHHHHHhhCCC--eEEEecCCCCHHHHHH----HHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhh
Q 015595 283 VDWLTEKMRGYNF--TVSSMHGDMPQKERDA----IMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIH 356 (404)
Q Consensus 283 ~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q 356 (404)
++.+++.|++.+. .+..+||+++..+|.. +++.|++++..+||||+++++|+|++ ++.+|.+..| ..+|+|
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iq 311 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQ 311 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHH
Confidence 9999999988765 5899999999999876 48899999999999999999999995 7888877544 789999
Q ss_pred hccccCCCCCc----eeEEEEeccCc
Q 015595 357 RIGRSGRFGRK----GVAINFVKNDD 378 (404)
Q Consensus 357 ~~GR~~R~g~~----~~~~~~~~~~~ 378 (404)
|+||+||.|+. |.++++....+
T Consensus 312 r~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 312 RLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HhccccCCCCCCCCCCeEEEEeecCC
Confidence 99999998754 37788777543
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.8e-37 Score=300.86 Aligned_cols=305 Identities=18% Similarity=0.293 Sum_probs=232.8
Q ss_pred HHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHH-HccccCeeEEEEE
Q 015595 58 AIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHACV 136 (404)
Q Consensus 58 ~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~-~~~~~~~~~~~~~ 136 (404)
.+-.+++..+.++++++++|+||||||+++.+++++.... ..+++++.|+++++.|..+.+.+ ++...+..+....
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~v 84 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRM 84 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEe
Confidence 3445667777788999999999999999999888865432 23799999999999999998854 4555666776666
Q ss_pred cCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc-CCCcccceEEeccccc-cccCc-HHHHHHHHhhCCCCceEEEEeee
Q 015595 137 GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDEM-LSRGF-KDQIYDVYRYLPPDLQVVLISAT 213 (404)
Q Consensus 137 ~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~~-~~~~~-~~~~~~~~~~~~~~~~~i~~SAT 213 (404)
++.... .....|+|+|++.+.+++... .+..++++||||+|.. .+... ...+..+.+.++++.|+++||||
T Consensus 85 r~~~~~------~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSAT 158 (812)
T PRK11664 85 RAESKV------GPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSAT 158 (812)
T ss_pred cCcccc------CCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecC
Confidence 554321 234679999999999988754 6788999999999973 33332 23445566667788999999999
Q ss_pred cchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHH----HHHHhhhhcCCCCeEEEEecchhhHHHHHHH
Q 015595 214 LPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF----DTLCDLYDTLTITQAVIFCNTKRKVDWLTEK 289 (404)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~ 289 (404)
++.+. +..++.++..+...... ..+.+.|.......... ..+..++.. ..+.+|||+++..+++.+++.
T Consensus 159 l~~~~---l~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 159 LDNDR---LQQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred CCHHH---HHHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHH
Confidence 98752 34566555444443332 23455554443332111 234444443 468899999999999999999
Q ss_pred Hhh---CCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCC-----------------
Q 015595 290 MRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPN----------------- 349 (404)
Q Consensus 290 l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~----------------- 349 (404)
|++ .++.+..+||+++..+|..+++.|.+|+.+|||||+++++|+|+|++++||+++.+.
T Consensus 232 L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 311 (812)
T PRK11664 232 LASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQR 311 (812)
T ss_pred HHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEe
Confidence 987 477899999999999999999999999999999999999999999999999988653
Q ss_pred -ChhhhhhhccccCCCCCceeEEEEeccCcH
Q 015595 350 -NRELYIHRIGRSGRFGRKGVAINFVKNDDI 379 (404)
Q Consensus 350 -s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 379 (404)
|-.++.||.||+||. ++|.||.++++++.
T Consensus 312 iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 312 ISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred echhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 346799999999999 69999999997644
No 63
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=9.5e-37 Score=298.45 Aligned_cols=347 Identities=21% Similarity=0.311 Sum_probs=271.0
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHH
Q 015595 41 KDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKV 120 (404)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~ 120 (404)
...+..++.+.|+..|+.||.+++..+.+|++++|+.+||||||.++++++++.+...... ++|++.|+++|++++.+.
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAER 134 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHH
Confidence 4445788889999999999999999999999999999999999999999999999877664 799999999999999999
Q ss_pred HHHHccccC--eeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc------CCCcccceEEecccccccc---C
Q 015595 121 ILAIGDFIN--IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK------TLRTRAIKLLDESDEMLSR---G 189 (404)
Q Consensus 121 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~------~~~~~~~vIiDE~h~~~~~---~ 189 (404)
++++....+ +.....+|++...++.....+.++|++|||+++..++-+. .+..++++|+||+|.+-.. .
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~ 214 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSE 214 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhH
Confidence 999887776 7778888888877776777889999999999999855432 3566899999999975432 2
Q ss_pred cHHH---HHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecC--------chhHH
Q 015595 190 FKDQ---IYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER--------EEWKF 258 (404)
Q Consensus 190 ~~~~---~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 258 (404)
.... +....+..+.++|+|++|||..+. .+....+.+...... ..+...+..........+. ...+.
T Consensus 215 vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~ 292 (851)
T COG1205 215 VALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELAESIRRSAL 292 (851)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhhhhcccchH
Confidence 2233 333444445689999999999775 566666666666554 3333444444444444441 01233
Q ss_pred HHHHhhhhcC--CCCeEEEEecchhhHHHHH----HHHhhCC----CeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 015595 259 DTLCDLYDTL--TITQAVIFCNTKRKVDWLT----EKMRGYN----FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD 328 (404)
Q Consensus 259 ~~l~~~l~~~--~~~k~lIf~~~~~~~~~l~----~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 328 (404)
..+..+.... .+-++|+|+.++..++.+. ..+...+ ..+..+++++...+|..++..|++|+..++++|.
T Consensus 293 ~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~ 372 (851)
T COG1205 293 AELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATN 372 (851)
T ss_pred HHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecch
Confidence 4444443332 4568999999999999886 4444444 5688999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEccCCC-ChhhhhhhccccCCCCCceeEEEEeccC--cHHHHHHHHHHHc
Q 015595 329 VWARGLDVQQVSLVINYDLPN-NRELYIHRIGRSGRFGRKGVAINFVKND--DIKILRDIEQYYS 390 (404)
Q Consensus 329 ~~~~Gid~p~~~~vi~~~~p~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~~--~~~~~~~~~~~~~ 390 (404)
+++-|+|+.+++.||..+.|. +..++.|+.||+||.++.+..+.++..+ |......-...++
T Consensus 373 AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 373 ALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred hhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999 9999999999999999887777777744 3344444444444
No 64
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=7.2e-36 Score=298.32 Aligned_cols=322 Identities=20% Similarity=0.278 Sum_probs=236.3
Q ss_pred CCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEE
Q 015595 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~ 133 (404)
.++++||.+++..++++ ++++++|||+|||.++++.+...+. ..+.++||++|+++|+.|+.+.++++....+..+.
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 48999999999988877 8999999999999998888877763 33457999999999999999999987655455777
Q ss_pred EEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
.++|+.....+. ....+.+|+++||+.+...+... .+..++++||||||++........+...+....+.++++++|
T Consensus 91 ~~~g~~~~~~r~-~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lT 169 (773)
T PRK13766 91 VFTGEVSPEKRA-ELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLT 169 (773)
T ss_pred EEeCCCCHHHHH-HHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEE
Confidence 778777655433 33456899999999998766544 456789999999999876544444444444445577899999
Q ss_pred eecchH---HHHHHHhccCCCeEEEecCC---------------------------------------------ccccCC
Q 015595 212 ATLPHE---ILEMTTKFMTDPVKILVKRD---------------------------------------------ELTLEG 243 (404)
Q Consensus 212 AT~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~ 243 (404)
|||... +...+..+....+.+..... ......
T Consensus 170 aTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~ 249 (773)
T PRK13766 170 ASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSIS 249 (773)
T ss_pred cCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 998432 11222221111000000000 000000
Q ss_pred --------------ceEE--------------------------------------------------------------
Q 015595 244 --------------IKQF-------------------------------------------------------------- 247 (404)
Q Consensus 244 --------------~~~~-------------------------------------------------------------- 247 (404)
+...
T Consensus 250 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~ 329 (773)
T PRK13766 250 PDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVED 329 (773)
T ss_pred CCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhC
Confidence 0000
Q ss_pred ---------EEEecCchhHHHHHHhhhhc----CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCC--------CCH
Q 015595 248 ---------FVAVEREEWKFDTLCDLYDT----LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGD--------MPQ 306 (404)
Q Consensus 248 ---------~~~~~~~~~~~~~l~~~l~~----~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~--------~~~ 306 (404)
...+.....|.+.|.++++. ..+.++||||++..+++.+++.|...++.+..+||. ++.
T Consensus 330 ~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 409 (773)
T PRK13766 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQ 409 (773)
T ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCH
Confidence 00001112345555555543 567899999999999999999999989998888886 888
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHH
Q 015595 307 KERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIK 380 (404)
Q Consensus 307 ~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 380 (404)
.+|..+++.|++|+.++||+|+++++|+|+|++++||+|++|+|...|+||+||+||.|. |.+++++..++..
T Consensus 410 ~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~e 482 (773)
T PRK13766 410 KEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTRD 482 (773)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCChH
Confidence 999999999999999999999999999999999999999999999999999999999865 7888888766543
No 65
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.3e-36 Score=312.35 Aligned_cols=325 Identities=18% Similarity=0.225 Sum_probs=243.4
Q ss_pred HHHHHH-CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHH
Q 015595 45 LRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (404)
Q Consensus 45 ~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 123 (404)
.+.+++ .|| .|++.|+.+++.+++|+++++.||||+|||+.++++...... ++.+++|++||++|+.|+.+.++.
T Consensus 69 ~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l~~ 144 (1638)
T PRK14701 69 EEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKIES 144 (1638)
T ss_pred HHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHHHH
Confidence 344444 789 799999999999999999999999999999865554443322 345799999999999999999999
Q ss_pred Hcccc--CeeEEEEEcCcchHHHH---HHHhc-CCCeEEeChHHHHHHHHccCCCcccceEEecccccccc---------
Q 015595 124 IGDFI--NIQAHACVGGKSVGEDI---RKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSR--------- 188 (404)
Q Consensus 124 ~~~~~--~~~~~~~~~~~~~~~~~---~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~--------- 188 (404)
+.... ++.+..++|+.+..++. ..+.. .++|+|+||+.+...+.......++++|+||||.++.+
T Consensus 145 l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~ 224 (1638)
T PRK14701 145 FCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQ 224 (1638)
T ss_pred HHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhh
Confidence 87664 45667778887765443 23333 48999999999887766433356899999999999762
Q ss_pred --CcHHHHHH----HHh----------------------hCCCCce-EEEEeeecchHHHHHHHhccCCCeEEEecCCcc
Q 015595 189 --GFKDQIYD----VYR----------------------YLPPDLQ-VVLISATLPHEILEMTTKFMTDPVKILVKRDEL 239 (404)
Q Consensus 189 --~~~~~~~~----~~~----------------------~~~~~~~-~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (404)
+|...+.. +++ .+++..+ .+.+|||.++. .....++.++..+.+.....
T Consensus 225 llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~~l~f~v~~~~~ 302 (1638)
T PRK14701 225 LLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYRELLGFEVGSGRS 302 (1638)
T ss_pred cCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhcCeEEEecCCCC
Confidence 45544432 221 2344455 57799999863 11123345666666655555
Q ss_pred ccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhh---HHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHH
Q 015595 240 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRK---VDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEF 316 (404)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 316 (404)
...++.+.+....... + ..+..+++.. +..+||||++.+. |+.+++.|...|+.+..+|++ |...++.|
T Consensus 303 ~lr~i~~~yi~~~~~~-k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F 374 (1638)
T PRK14701 303 ALRNIVDVYLNPEKII-K-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLF 374 (1638)
T ss_pred CCCCcEEEEEECCHHH-H-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHH
Confidence 5667777766544332 3 4677777765 5689999999775 589999999999999999995 88899999
Q ss_pred hcCCCcEEEEcC----ccccCCCCCC-CCEEEEccCCC---Chhhhhhhc-------------cccCCCCCceeEEEEec
Q 015595 317 RSGTTRVLITTD----VWARGLDVQQ-VSLVINYDLPN---NRELYIHRI-------------GRSGRFGRKGVAINFVK 375 (404)
Q Consensus 317 ~~~~~~vlv~t~----~~~~Gid~p~-~~~vi~~~~p~---s~~~~~Q~~-------------GR~~R~g~~~~~~~~~~ 375 (404)
++|+.+|||||. .+++|+|+|+ +++||+++.|. |...|.|.. ||++|.|..+.++..+.
T Consensus 375 ~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~ 454 (1638)
T PRK14701 375 EEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVF 454 (1638)
T ss_pred HcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhH
Confidence 999999999994 7889999998 99999999998 777666655 99999998877775444
Q ss_pred cCcHHHHH
Q 015595 376 NDDIKILR 383 (404)
Q Consensus 376 ~~~~~~~~ 383 (404)
..++..++
T Consensus 455 ~~~~~~~~ 462 (1638)
T PRK14701 455 PEDVEFLR 462 (1638)
T ss_pred HHHHHHHH
Confidence 44444333
No 66
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.7e-36 Score=286.12 Aligned_cols=315 Identities=16% Similarity=0.143 Sum_probs=218.6
Q ss_pred CCcHHHHHhhhhhhc-C--CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCee
Q 015595 55 KPSAIQQRAVMPIIK-G--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~-~--~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~ 131 (404)
.||+||.+++..+.. + ++.++++|||+|||++++..+... +.++||+||+..|+.||.+++.++.......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 699999999998774 3 367999999999999988765543 1349999999999999999999986544455
Q ss_pred EEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHH----------HHccCCCcccceEEeccccccccCcHHHHHHHHhhC
Q 015595 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDM----------IKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYL 201 (404)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~----------l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~ 201 (404)
+..++|+.... .....+|+|+|++.+... +....-..++++|+||||++.... ...++..+
T Consensus 329 I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~----fr~il~~l 399 (732)
T TIGR00603 329 ICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM----FRRVLTIV 399 (732)
T ss_pred EEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH----HHHHHHhc
Confidence 55555543221 122478999999877532 122122467899999999985544 33444444
Q ss_pred CCCceEEEEeeecchHHH--HHHHhccCCCeEEEecC------CccccCCceEEEEEec--------------------C
Q 015595 202 PPDLQVVLISATLPHEIL--EMTTKFMTDPVKILVKR------DELTLEGIKQFFVAVE--------------------R 253 (404)
Q Consensus 202 ~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--------------------~ 253 (404)
+ ....+++||||..+.. ..+..+++ |..+.... ....+......+.... .
T Consensus 400 ~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~ 477 (732)
T TIGR00603 400 Q-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVM 477 (732)
T ss_pred C-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhh
Confidence 3 4457999999954211 11222223 22211111 1111111111111111 1
Q ss_pred chhHHHHHHhhhhcC--CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcCcc
Q 015595 254 EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSG-TTRVLITTDVW 330 (404)
Q Consensus 254 ~~~~~~~l~~~l~~~--~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~t~~~ 330 (404)
...|...+..+++.+ .+.++||||.+...++.+++.|. +..+||+++..+|..+++.|+.+ ..++||+|+++
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVg 552 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVG 552 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEeccc
Confidence 123555555566544 67899999999999999988873 46689999999999999999865 77999999999
Q ss_pred ccCCCCCCCCEEEEccCC-CChhhhhhhccccCCCCCcee-------EEEEeccCcH--HHHHHHHHHHcc
Q 015595 331 ARGLDVQQVSLVINYDLP-NNRELYIHRIGRSGRFGRKGV-------AINFVKNDDI--KILRDIEQYYST 391 (404)
Q Consensus 331 ~~Gid~p~~~~vi~~~~p-~s~~~~~Q~~GR~~R~g~~~~-------~~~~~~~~~~--~~~~~~~~~~~~ 391 (404)
.+|+|+|++++||+++.| .|..+|+||+||++|.+..+. .|.+++.++. .+..+-++++-.
T Consensus 553 deGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~ 623 (732)
T TIGR00603 553 DTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVD 623 (732)
T ss_pred ccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHH
Confidence 999999999999999987 599999999999999975544 4888887744 444555555543
No 67
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=2.3e-36 Score=281.10 Aligned_cols=328 Identities=19% Similarity=0.285 Sum_probs=229.2
Q ss_pred CCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeE
Q 015595 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (404)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~ 132 (404)
...+|+||.+++...+ +++++|++|||+|||++++..+...+...++ .++++++|++-|+.|+...+..++.. ..+
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~ 135 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIP--YSV 135 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCc--ccc
Confidence 3379999999999989 9999999999999999999999888877665 77999999999999999888877644 444
Q ss_pred EEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCC---CcccceEEeccccccccC-cHHHHHHHHhhCCCCceEE
Q 015595 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL---RTRAIKLLDESDEMLSRG-FKDQIYDVYRYLPPDLQVV 208 (404)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~---~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i 208 (404)
....+|.........+-...+|+++||+.+.+.+..... ..+.++||||||+..... |...+..++..-....|++
T Consensus 136 T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qIL 215 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQIL 215 (746)
T ss_pred eeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEE
Confidence 455555333333334445689999999999999887644 448889999999976654 4444445544444455999
Q ss_pred EEeeecchHHHHHHH---hccC----------------------CCeEEEec----------------------------
Q 015595 209 LISATLPHEILEMTT---KFMT----------------------DPVKILVK---------------------------- 235 (404)
Q Consensus 209 ~~SAT~~~~~~~~~~---~~~~----------------------~~~~~~~~---------------------------- 235 (404)
++||||......... .++- .|..+...
T Consensus 216 gLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~ 295 (746)
T KOG0354|consen 216 GLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEIS 295 (746)
T ss_pred EEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccc
Confidence 999998643222110 0000 00000000
Q ss_pred ------------CCccccC--------------------------Cce---------EEEE-------------------
Q 015595 236 ------------RDELTLE--------------------------GIK---------QFFV------------------- 249 (404)
Q Consensus 236 ------------~~~~~~~--------------------------~~~---------~~~~------------------- 249 (404)
......+ +++ .++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~ 375 (746)
T KOG0354|consen 296 DKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRN 375 (746)
T ss_pred cccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHH
Confidence 0000000 000 0000
Q ss_pred -------------EecCchhHHHHHHhhhh----cCCCCeEEEEecchhhHHHHHHHHhhC---CCeEEEec--------
Q 015595 250 -------------AVEREEWKFDTLCDLYD----TLTITQAVIFCNTKRKVDWLTEKMRGY---NFTVSSMH-------- 301 (404)
Q Consensus 250 -------------~~~~~~~~~~~l~~~l~----~~~~~k~lIf~~~~~~~~~l~~~l~~~---~~~~~~~~-------- 301 (404)
..+....|++.+.+++. ..+..++||||.++..|..+...|.+. ++....+-
T Consensus 376 ~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~ 455 (746)
T KOG0354|consen 376 FTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQS 455 (746)
T ss_pred HHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccc
Confidence 00001113333333332 234468999999999999999999842 33433333
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHH
Q 015595 302 GDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKI 381 (404)
Q Consensus 302 ~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 381 (404)
.+|++..+.+++++|++|+.+|||||+++++|+|++.|+.||.|+...|+..++||.|| ||. +.|.+++++.......
T Consensus 456 ~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~~ 533 (746)
T KOG0354|consen 456 TGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIE 533 (746)
T ss_pred cccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHHH
Confidence 36899999999999999999999999999999999999999999999999999999999 897 5688888888655544
Q ss_pred HHHHH
Q 015595 382 LRDIE 386 (404)
Q Consensus 382 ~~~~~ 386 (404)
++...
T Consensus 534 ~E~~~ 538 (746)
T KOG0354|consen 534 FERNN 538 (746)
T ss_pred HHHHH
Confidence 44433
No 68
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.2e-35 Score=275.69 Aligned_cols=318 Identities=17% Similarity=0.207 Sum_probs=240.8
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|+ .|++.|..+++.++.|+ +..+.||+|||+++.++++.....+ ..++|++|++.|+.|.++++..+...+++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G---~~v~VvTptreLA~qdae~~~~l~~~lGl 173 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAG---LPVHVITVNDYLAERDAELMRPLYEALGL 173 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcC---CeEEEEcCcHHHHHHHHHHHHHHHhhcCC
Confidence 466 89999999999999998 9999999999999999998876554 45999999999999999999999999999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHH-HHHHcc---------------------------CCCcccceEEecc
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK---------------------------TLRTRAIKLLDES 182 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~l~~~---------------------------~~~~~~~vIiDE~ 182 (404)
++..+.|+.+.. .+....+++|+++|...|- +++..+ ....+.+.||||+
T Consensus 174 sv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEv 251 (656)
T PRK12898 174 TVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEA 251 (656)
T ss_pred EEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecc
Confidence 999999987643 3444567999999987663 333221 1234578899999
Q ss_pred cccccc------------------CcHHHHHHHHhhCCC-----------------------------------------
Q 015595 183 DEMLSR------------------GFKDQIYDVYRYLPP----------------------------------------- 203 (404)
Q Consensus 183 h~~~~~------------------~~~~~~~~~~~~~~~----------------------------------------- 203 (404)
|.++-+ ........+.+.+..
T Consensus 252 DSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~ 331 (656)
T PRK12898 252 DSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRRE 331 (656)
T ss_pred cceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHH
Confidence 975311 000111111111100
Q ss_pred ----------------------------------------------------------------------------CceE
Q 015595 204 ----------------------------------------------------------------------------DLQV 207 (404)
Q Consensus 204 ----------------------------------------------------------------------------~~~~ 207 (404)
-.++
T Consensus 332 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl 411 (656)
T PRK12898 332 ELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRL 411 (656)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHH
Confidence 0478
Q ss_pred EEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcC--CCCeEEEEecchhhHHH
Q 015595 208 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDW 285 (404)
Q Consensus 208 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~k~lIf~~~~~~~~~ 285 (404)
.+||||......++...+..++..+...... .....+.+...+ ...|...+...+... .+.++||||++++.++.
T Consensus 412 ~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t-~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~ 488 (656)
T PRK12898 412 AGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLT-AAAKWAAVAARVRELHAQGRPVLVGTRSVAASER 488 (656)
T ss_pred hcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeC-HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 8999999887777777776665544433332 111222233333 445888888877653 35689999999999999
Q ss_pred HHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCC---CCC-----EEEEccCCCChhhhhhh
Q 015595 286 LTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ---QVS-----LVINYDLPNNRELYIHR 357 (404)
Q Consensus 286 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p---~~~-----~vi~~~~p~s~~~~~Q~ 357 (404)
+++.|...++++..+||+++ .++..+..|..+...|+|||+++++|+|++ ++. +||.++.|.|...|.||
T Consensus 489 L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr 566 (656)
T PRK12898 489 LSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQL 566 (656)
T ss_pred HHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHh
Confidence 99999999999999999854 455555666666678999999999999999 665 99999999999999999
Q ss_pred ccccCCCCCceeEEEEeccCcHHH
Q 015595 358 IGRSGRFGRKGVAINFVKNDDIKI 381 (404)
Q Consensus 358 ~GR~~R~g~~~~~~~~~~~~~~~~ 381 (404)
+||+||.|++|.++.|++.+|.-+
T Consensus 567 ~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 567 AGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred cccccCCCCCeEEEEEechhHHHH
Confidence 999999999999999999876543
No 69
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=8e-35 Score=293.78 Aligned_cols=287 Identities=20% Similarity=0.266 Sum_probs=210.8
Q ss_pred HHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHcc
Q 015595 47 GIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (404)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 126 (404)
.+.+.....|+++|+.+++.++.|++++++||||+|||..+ +++...+.. .+.+++|++||++|+.|+.+.++++..
T Consensus 70 ~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~~l~~ 146 (1171)
T TIGR01054 70 FFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSLFLAK--KGKRCYIILPTTLLVIQVAEKISSLAE 146 (1171)
T ss_pred HHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHHHHHH
Confidence 33333334899999999999999999999999999999744 444443332 246799999999999999999999887
Q ss_pred ccCeeEE---EEEcCcchHHHH---HHHh-cCCCeEEeChHHHHHHHHccCCCcccceEEecccccccc-----------
Q 015595 127 FINIQAH---ACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSR----------- 188 (404)
Q Consensus 127 ~~~~~~~---~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~----------- 188 (404)
..++.+. .++|+.+..++. ..+. .+++|+|+||+++.+.+..... .++++|+||||.+++.
T Consensus 147 ~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~il~ll 225 (1171)
T TIGR01054 147 KAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKASKNVDKLLKLL 225 (1171)
T ss_pred hcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhccccHHHHHHHc
Confidence 6665443 456777655432 2333 3589999999999988776333 7899999999999873
Q ss_pred CcHHH-HHHH----------------------HhhCCCCce--EEEEeeec-chHHHHHHHhccCCCeEEEecCCccccC
Q 015595 189 GFKDQ-IYDV----------------------YRYLPPDLQ--VVLISATL-PHEILEMTTKFMTDPVKILVKRDELTLE 242 (404)
Q Consensus 189 ~~~~~-~~~~----------------------~~~~~~~~~--~i~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (404)
+|... +..+ ++.+++..| ++++|||. +..... .++.++..+.+........
T Consensus 226 GF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~~~~r 302 (1171)
T TIGR01054 226 GFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGSDTLR 302 (1171)
T ss_pred CCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCcccccc
Confidence 34332 3332 223344444 56789994 444332 2334444455544444556
Q ss_pred CceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecch---hhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcC
Q 015595 243 GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK---RKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSG 319 (404)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 319 (404)
++.+.+..... +...+.++++.. +.++||||++. +.++.+++.|+..|+.+..+||+++ +..++.|++|
T Consensus 303 ~I~~~~~~~~~---~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G 374 (1171)
T TIGR01054 303 NVVDVYVEDED---LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEG 374 (1171)
T ss_pred ceEEEEEeccc---HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcC
Confidence 67776654332 234566666654 46799999999 9999999999999999999999986 3689999999
Q ss_pred CCcEEEEc----CccccCCCCCC-CCEEEEccCC
Q 015595 320 TTRVLITT----DVWARGLDVQQ-VSLVINYDLP 348 (404)
Q Consensus 320 ~~~vlv~t----~~~~~Gid~p~-~~~vi~~~~p 348 (404)
+.+||||| +.+++|+|+|+ ++.||+++.|
T Consensus 375 ~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 375 EIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred CCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 99999995 89999999999 8999997755
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1e-34 Score=262.22 Aligned_cols=287 Identities=14% Similarity=0.179 Sum_probs=198.8
Q ss_pred HHHHhhhhhhcCCc--EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccc----cCeeE
Q 015595 59 IQQRAVMPIIKGRD--VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF----INIQA 132 (404)
Q Consensus 59 ~Q~~~~~~~~~~~~--~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~----~~~~~ 132 (404)
||.++++.+.++++ +++++|||||||.+++++++.. ..+++|++|+++|++|+.+.++++... .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 69999999998874 7889999999999998887741 235899999999999999999887632 24455
Q ss_pred EEEEcCcchHH-HH-------------------HHHhcCCCeEEeChHHHHHHHHcc----------CCCcccceEEecc
Q 015595 133 HACVGGKSVGE-DI-------------------RKLEHGVHVVSGTPGRVCDMIKRK----------TLRTRAIKLLDES 182 (404)
Q Consensus 133 ~~~~~~~~~~~-~~-------------------~~~~~~~~iiv~T~~~l~~~l~~~----------~~~~~~~vIiDE~ 182 (404)
..+.|...... .. ....+.+.|+++||+.|..++... .+..++++||||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 55555422110 00 011235788999999998765431 1467899999999
Q ss_pred ccccccCcH-----HHHHHHHhhCCCCceEEEEeeecchHHHHHHHhc--cCCCeEEEecCCccc---------------
Q 015595 183 DEMLSRGFK-----DQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF--MTDPVKILVKRDELT--------------- 240 (404)
Q Consensus 183 h~~~~~~~~-----~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------- 240 (404)
|.+...... .....+........++++||||+++.+...+... ++.+...........
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 997643311 1223333333345799999999999877777654 444433322220000
Q ss_pred ---cCCceEEEEEecCchhHHHHHH-------hhhhcCCCCeEEEEecchhhHHHHHHHHhhCC--CeEEEecCCCCHHH
Q 015595 241 ---LEGIKQFFVAVEREEWKFDTLC-------DLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN--FTVSSMHGDMPQKE 308 (404)
Q Consensus 241 ---~~~~~~~~~~~~~~~~~~~~l~-------~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~ 308 (404)
.+.+.+.+.. ....+...+. +.++...++++||||+++..++.+++.|+..+ ..+..+||.+++.+
T Consensus 235 ~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~ 312 (357)
T TIGR03158 235 RPVLPPVELELIP--APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKD 312 (357)
T ss_pred ceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHH
Confidence 0133333332 2222332222 22233456799999999999999999999864 57888999999988
Q ss_pred HHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccC
Q 015595 309 RDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSG 362 (404)
Q Consensus 309 r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~ 362 (404)
|.+. ++..+||||+++++|+|+|.. +|| ++ |.+...|+||+||+|
T Consensus 313 R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 313 RERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 7654 378999999999999999976 555 44 889999999999986
No 71
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.4e-35 Score=278.33 Aligned_cols=319 Identities=17% Similarity=0.204 Sum_probs=235.4
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|+ .|++.|..+...+.+|+ +..+.||+|||++++++++.....+. .+.+++|+..|+.|.++++..+...+++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~---~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGK---GVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCC---CeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 477 89999999988887775 99999999999999999886655554 4999999999999999999999999999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHH-HHHHHcc--------CCCcccceEEeccccccccC------------
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK--------TLRTRAIKLLDESDEMLSRG------------ 189 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~--------~~~~~~~vIiDE~h~~~~~~------------ 189 (404)
++..+.|+.+...+.+. ...++|+++||+.+ .+++..+ ....+.++|+||+|.++-..
T Consensus 149 ~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~ 227 (790)
T PRK09200 149 TVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPR 227 (790)
T ss_pred eEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCc
Confidence 99999999873233232 34699999999888 3433322 34677899999999864110
Q ss_pred ----cHHHHHHHHhhCCCC-------------------------------------------------------------
Q 015595 190 ----FKDQIYDVYRYLPPD------------------------------------------------------------- 204 (404)
Q Consensus 190 ----~~~~~~~~~~~~~~~------------------------------------------------------------- 204 (404)
.......+...+...
T Consensus 228 ~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV 307 (790)
T PRK09200 228 VQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIV 307 (790)
T ss_pred cccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 111111222111100
Q ss_pred --------------------------------------------------------ceEEEEeeecchHHHHHHHhccCC
Q 015595 205 --------------------------------------------------------LQVVLISATLPHEILEMTTKFMTD 228 (404)
Q Consensus 205 --------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~ 228 (404)
.++.+||+|...+..++.+-+ +-
T Consensus 308 ~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y-~l 386 (790)
T PRK09200 308 YDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY-NM 386 (790)
T ss_pred ECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh-CC
Confidence 367777777755544443333 22
Q ss_pred CeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCH
Q 015595 229 PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 306 (404)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 306 (404)
.+... +....................|...+...+.. ..+.++||||++++.++.++..|...++++..+||++..
T Consensus 387 ~v~~I--Pt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~ 464 (790)
T PRK09200 387 EVVQI--PTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAA 464 (790)
T ss_pred cEEEC--CCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccH
Confidence 22222 11111111111112223334577777777754 357789999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccCCCC---CCCC-----EEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCc
Q 015595 307 KERDAIMGEFRSGTTRVLITTDVWARGLDV---QQVS-----LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDD 378 (404)
Q Consensus 307 ~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~---p~~~-----~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 378 (404)
.++..+...+..| .|+|||+++++|+|+ |++. +||.++.|.|...|.||.||+||.|++|.++.|++.+|
T Consensus 465 ~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 465 KEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred HHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 7777666666554 799999999999999 6898 99999999999999999999999999999999999865
Q ss_pred HHH
Q 015595 379 IKI 381 (404)
Q Consensus 379 ~~~ 381 (404)
.-+
T Consensus 543 ~l~ 545 (790)
T PRK09200 543 DLL 545 (790)
T ss_pred HHH
Confidence 543
No 72
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2.3e-34 Score=273.07 Aligned_cols=317 Identities=17% Similarity=0.158 Sum_probs=224.1
Q ss_pred CcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEE
Q 015595 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (404)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~ 135 (404)
++|+|.+++..+.-++..++.++||+|||++++++++.....+. .++|++|++.|+.|+.+++..+...+++++..+
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~---~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~ 145 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGK---GAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLG 145 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCC---ceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 34444444444444445799999999999999999876655544 499999999999999999999998999999887
Q ss_pred EcCcc---hHHHHHHHhcCCCeEEeChHHH-HHHHHc--------cCCCcccceEEeccccccccC--------------
Q 015595 136 VGGKS---VGEDIRKLEHGVHVVSGTPGRV-CDMIKR--------KTLRTRAIKLLDESDEMLSRG-------------- 189 (404)
Q Consensus 136 ~~~~~---~~~~~~~~~~~~~iiv~T~~~l-~~~l~~--------~~~~~~~~vIiDE~h~~~~~~-------------- 189 (404)
.++.. ..........+++|+++||+.| .+++.. ..+..+.++|+||+|.++-..
T Consensus 146 ~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~ 225 (762)
T TIGR03714 146 VVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQ 225 (762)
T ss_pred ECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccc
Confidence 76521 2222333345799999999999 444432 135678899999999864211
Q ss_pred --cHHHHHHHHhhCCCC---------------------------------------------------------------
Q 015595 190 --FKDQIYDVYRYLPPD--------------------------------------------------------------- 204 (404)
Q Consensus 190 --~~~~~~~~~~~~~~~--------------------------------------------------------------- 204 (404)
.......+.+.+...
T Consensus 226 ~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~ 305 (762)
T TIGR03714 226 SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305 (762)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 111111111111100
Q ss_pred ------------------------------------------------------ceEEEEeeecchHHHHHHHhccCCCe
Q 015595 205 ------------------------------------------------------LQVVLISATLPHEILEMTTKFMTDPV 230 (404)
Q Consensus 205 ------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~ 230 (404)
.++.+||+|...+..++.+-+ +-.+
T Consensus 306 ~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY-~l~v 384 (762)
T TIGR03714 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETY-SLSV 384 (762)
T ss_pred CEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHh-CCCE
Confidence 467788888766555554333 2222
Q ss_pred EEEecCCccccCCceEEEEEecCchhHHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHH
Q 015595 231 KILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKE 308 (404)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 308 (404)
...+ ....................|...+...+.. ..+.++||||++++.++.++..|...++++..+||++...+
T Consensus 385 ~~IP--t~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E 462 (762)
T TIGR03714 385 VKIP--TNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKE 462 (762)
T ss_pred EEcC--CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHH
Confidence 2221 1111111111112223334577777776654 45678999999999999999999999999999999998877
Q ss_pred HHHHHHHHhcCCCcEEEEcCccccCCCCC---------CCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcH
Q 015595 309 RDAIMGEFRSGTTRVLITTDVWARGLDVQ---------QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 379 (404)
Q Consensus 309 r~~~~~~f~~~~~~vlv~t~~~~~Gid~p---------~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 379 (404)
+..+.+.++.| .|+|||+++++|+|+| ++.+|+.+++|..... .||.||+||.|.+|.++.|++.+|.
T Consensus 463 ~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 463 AQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred HHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 76666655555 7999999999999999 8899999999987666 9999999999999999999998765
Q ss_pred HH
Q 015595 380 KI 381 (404)
Q Consensus 380 ~~ 381 (404)
-+
T Consensus 540 l~ 541 (762)
T TIGR03714 540 LI 541 (762)
T ss_pred hh
Confidence 43
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=8e-34 Score=267.66 Aligned_cols=318 Identities=19% Similarity=0.225 Sum_probs=236.8
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|+ .|++.|......+..|+ +..++||+|||+++.++++.....+. .+.+++|+..|+.|.++++..+...+++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~---~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK---GVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC---CEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 466 79999999888877775 99999999999999998864444443 4999999999999999999999999999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHH-HHHHHcc--------CCCcccceEEeccccccccC------------
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK--------TLRTRAIKLLDESDEMLSRG------------ 189 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~--------~~~~~~~vIiDE~h~~~~~~------------ 189 (404)
++..+.++.+...+.... .++|+++||..| .+++... .+..+.++|+||+|.++-..
T Consensus 127 sv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~ 204 (745)
T TIGR00963 127 SVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAE 204 (745)
T ss_pred eEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCC
Confidence 999999988765443333 489999999999 7777654 45778999999999865311
Q ss_pred ----cHHHHHHHHhhCCC--------C-----------------------------------------------------
Q 015595 190 ----FKDQIYDVYRYLPP--------D----------------------------------------------------- 204 (404)
Q Consensus 190 ----~~~~~~~~~~~~~~--------~----------------------------------------------------- 204 (404)
.......+.+.+.. +
T Consensus 205 ~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 284 (745)
T TIGR00963 205 KSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIV 284 (745)
T ss_pred CchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 00000111111100 0
Q ss_pred --------------------------------------------------------ceEEEEeeecchHHHHHHHhccCC
Q 015595 205 --------------------------------------------------------LQVVLISATLPHEILEMTTKFMTD 228 (404)
Q Consensus 205 --------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~ 228 (404)
.++.+||+|...+..++..-+..
T Consensus 285 ~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l- 363 (745)
T TIGR00963 285 RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL- 363 (745)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC-
Confidence 46677777776554444433322
Q ss_pred CeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhh--cCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCH
Q 015595 229 PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD--TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 306 (404)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 306 (404)
++...+..... ...............|...+.+.+. ...+.++||||++++.++.+++.|.+.++++..+|++ .
T Consensus 364 ~vv~IPtnkp~--~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q 439 (745)
T TIGR00963 364 EVVVVPTNRPV--IRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--N 439 (745)
T ss_pred CEEEeCCCCCe--eeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--h
Confidence 22222211111 1111111222333346666655442 3357789999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccCCCCCC-------CCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcH
Q 015595 307 KERDAIMGEFRSGTTRVLITTDVWARGLDVQQ-------VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 379 (404)
Q Consensus 307 ~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~-------~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 379 (404)
..|+..+..|..+...|+|||+++++|+|++. ..+||.++.|.|...+.|+.||+||.|.+|.+..|++.+|.
T Consensus 440 ~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 440 HEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 78888999999999999999999999999998 45999999999999999999999999999999999998866
Q ss_pred HH
Q 015595 380 KI 381 (404)
Q Consensus 380 ~~ 381 (404)
-+
T Consensus 520 l~ 521 (745)
T TIGR00963 520 LM 521 (745)
T ss_pred HH
Confidence 44
No 74
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-34 Score=279.48 Aligned_cols=327 Identities=19% Similarity=0.267 Sum_probs=255.7
Q ss_pred HHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHcccc
Q 015595 49 YQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (404)
Q Consensus 49 ~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 128 (404)
..+|...+++-|.+++..++.|++++|.+|||.||+++|.++++-. ++-+++|.|..+|.+.+...+.+ .
T Consensus 258 ~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L~~----~ 327 (941)
T KOG0351|consen 258 EVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHLSK----K 327 (941)
T ss_pred HHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhhhh----c
Confidence 3478889999999999999999999999999999999998887633 22599999999999887777743 3
Q ss_pred CeeEEEEEcCcchHHH---HHHHhc---CCCeEEeChHHHHHHH------H-ccCCCcccceEEeccccccccC--cHHH
Q 015595 129 NIQAHACVGGKSVGED---IRKLEH---GVHVVSGTPGRVCDMI------K-RKTLRTRAIKLLDESDEMLSRG--FKDQ 193 (404)
Q Consensus 129 ~~~~~~~~~~~~~~~~---~~~~~~---~~~iiv~T~~~l~~~l------~-~~~~~~~~~vIiDE~h~~~~~~--~~~~ 193 (404)
++....++++....++ .+.+.. .++|++.|||++...- . ...-..+.++|+||||.++.++ |++.
T Consensus 328 ~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~ 407 (941)
T KOG0351|consen 328 GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPS 407 (941)
T ss_pred CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHH
Confidence 4777777776665433 223333 4789999999876321 1 1122236788999999998875 3333
Q ss_pred ---HHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCC
Q 015595 194 ---IYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 270 (404)
Q Consensus 194 ---~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 270 (404)
+..+...++ ...+|++|||.+..+...+-..++-.... ......+.+++...+..-.........+...-...+.
T Consensus 408 Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~ 485 (941)
T KOG0351|consen 408 YKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPE-LFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPD 485 (941)
T ss_pred HHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcc-eecccCCCCCceEEEEeccCccchHHHHHHhhhcCCC
Confidence 334444444 36799999999988888776665543333 2334445555554444333333344555555566777
Q ss_pred CeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCC
Q 015595 271 TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNN 350 (404)
Q Consensus 271 ~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s 350 (404)
..+||||.++..++.++..|++.++.+..||++|+..+|..+.+.|..++.+|++||-++++|+|-|++++||+|++|.|
T Consensus 486 ~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks 565 (941)
T KOG0351|consen 486 QSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKS 565 (941)
T ss_pred CCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHH
Q 015595 351 RELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQ 387 (404)
Q Consensus 351 ~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 387 (404)
...|.|-.|||||+|....|++|+...|...+..+..
T Consensus 566 ~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 566 FEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred HHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 9999999999999999999999999998776665543
No 75
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=271.92 Aligned_cols=328 Identities=17% Similarity=0.275 Sum_probs=243.3
Q ss_pred CCCCCCcHHHHHhhhhhhcC-CcEEEEcCCCCchhhHhHHHHHhhhhc-------CCCceeEEEEcccHHHHHHHHHHHH
Q 015595 51 YGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDT-------SSREVQALILSPTRELATQTEKVIL 122 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~-~~~iv~a~tGsGKT~~~~~~~~~~~~~-------~~~~~~~lil~p~~~L~~q~~~~~~ 122 (404)
++|..++..|.++++.+.+. .+.+||||||+|||.++++.+++.+.+ ...+.+++|++|+++|+.++.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 56778999999999987764 689999999999999999999999875 2346789999999999999999998
Q ss_pred HHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc-----CCCcccceEEeccccccccCcHHHHHHH
Q 015595 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-----TLRTRAIKLLDESDEMLSRGFKDQIYDV 197 (404)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-----~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 197 (404)
+-...+|+.+.-++|+....... -..++|+|+|||++.-.-++. .+..+.++|+||+|.+-++- +..+..+
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~R-GpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDR-GPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcc-cchHHHH
Confidence 88778899999999988654332 224999999999986433322 35677899999999876552 3333322
Q ss_pred -------HhhCCCCceEEEEeeecchHHHHHHHhccCC-CeEEEecCCccccCCceEEEEEecCc----------hhHHH
Q 015595 198 -------YRYLPPDLQVVLISATLPHEILEMTTKFMTD-PVKILVKRDELTLEGIKQFFVAVERE----------EWKFD 259 (404)
Q Consensus 198 -------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 259 (404)
.+......+++++|||+|+- .+....+-.+ +..+......+.+..+.+.+.-.... +...+
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~ 340 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYD 340 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHH
Confidence 23345678999999999884 3333322222 24444444555555566655544433 11234
Q ss_pred HHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhC----C-------------------CeEEEecCCCCHHHHHHHHHHH
Q 015595 260 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY----N-------------------FTVSSMHGDMPQKERDAIMGEF 316 (404)
Q Consensus 260 ~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~----~-------------------~~~~~~~~~~~~~~r~~~~~~f 316 (404)
.+.+.+.. +.+++|||.++..+...++.|.+. + ....++|+++...+|..+.+.|
T Consensus 341 kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F 418 (1230)
T KOG0952|consen 341 KVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEF 418 (1230)
T ss_pred HHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHH
Confidence 44444443 678999999999988888888653 1 2367899999999999999999
Q ss_pred hcCCCcEEEEcCccccCCCCCCCCEEEE----ccCC------CChhhhhhhccccCCCC--CceeEEEEeccCcHHHHHH
Q 015595 317 RSGTTRVLITTDVWARGLDVQQVSLVIN----YDLP------NNRELYIHRIGRSGRFG--RKGVAINFVKNDDIKILRD 384 (404)
Q Consensus 317 ~~~~~~vlv~t~~~~~Gid~p~~~~vi~----~~~p------~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~~~~~~~ 384 (404)
..|.++||+||.++..|+|+|+-..+|- |+.. ..+.+.+|..|||||.. ..|.++++.+.+-...+..
T Consensus 419 ~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~s 498 (1230)
T KOG0952|consen 419 KEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYES 498 (1230)
T ss_pred hcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHH
Confidence 9999999999999999999996555552 2221 35667899999999974 5689998888776655444
Q ss_pred H
Q 015595 385 I 385 (404)
Q Consensus 385 ~ 385 (404)
+
T Consensus 499 L 499 (1230)
T KOG0952|consen 499 L 499 (1230)
T ss_pred H
Confidence 3
No 76
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=3.6e-34 Score=242.73 Aligned_cols=341 Identities=17% Similarity=0.257 Sum_probs=258.5
Q ss_pred cccccccCCCCHHHHHHHHH-CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 31 AITSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
.-..-+++|++....+.|++ +....+||.|..+++....+.++++..|||.||+++|.++++-. ...+|++||
T Consensus 69 aawdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~p 142 (695)
T KOG0353|consen 69 AAWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICP 142 (695)
T ss_pred cccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeech
Confidence 33445778999998888876 56667899999999999999999999999999999999887632 235999999
Q ss_pred cHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHH------HHHHhcCCCeEEeChHHHHHHH------Hc-cCCCcccc
Q 015595 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGED------IRKLEHGVHVVSGTPGRVCDMI------KR-KTLRTRAI 176 (404)
Q Consensus 110 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~iiv~T~~~l~~~l------~~-~~~~~~~~ 176 (404)
..+|.+++.-+++.++ +....+....+..+. +.+..++..+++.||+++...- ++ ....++.+
T Consensus 143 lislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 143 LISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred hHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 9999999888888765 555455444433221 2222345789999999876422 22 24566778
Q ss_pred eEEeccccccccC--cH---HHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEe
Q 015595 177 KLLDESDEMLSRG--FK---DQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAV 251 (404)
Q Consensus 177 vIiDE~h~~~~~~--~~---~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (404)
+-+||+|....++ |+ ..+.-+.+.+ +...++++|||..+.+....+..+.-.....+. ..++.+++...+..-
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf-~~~~iigltatatn~vl~d~k~il~ie~~~tf~-a~fnr~nl~yev~qk 296 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQF-KGAPIIGLTATATNHVLDDAKDILCIEAAFTFR-AGFNRPNLKYEVRQK 296 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhC-CCCceeeeehhhhcchhhHHHHHHhHHhhheee-cccCCCCceeEeeeC
Confidence 8899999988764 22 2333444454 466799999999887777666554432222222 223344443333322
Q ss_pred c-CchhHHHHHHhhhh-cCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 015595 252 E-REEWKFDTLCDLYD-TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV 329 (404)
Q Consensus 252 ~-~~~~~~~~l~~~l~-~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 329 (404)
+ ..+.-.+.+..+++ ...+...+|||-|.+.+++++..|+.+|+.+..+|+.+.+.++.-+-+.|..|++.|+|+|-+
T Consensus 297 p~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatva 376 (695)
T KOG0353|consen 297 PGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVA 376 (695)
T ss_pred CCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEee
Confidence 2 23334555555554 345567899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEccCCCChhhhhh-------------------------------------------hccccCCCCC
Q 015595 330 WARGLDVQQVSLVINYDLPNNRELYIH-------------------------------------------RIGRSGRFGR 366 (404)
Q Consensus 330 ~~~Gid~p~~~~vi~~~~p~s~~~~~Q-------------------------------------------~~GR~~R~g~ 366 (404)
.++|+|-|++++||+.++|.|...|.| -.||+||.+.
T Consensus 377 fgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~ 456 (695)
T KOG0353|consen 377 FGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDM 456 (695)
T ss_pred ecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCC
Confidence 999999999999999999999999999 6799999999
Q ss_pred ceeEEEEeccCcHHHHH
Q 015595 367 KGVAINFVKNDDIKILR 383 (404)
Q Consensus 367 ~~~~~~~~~~~~~~~~~ 383 (404)
++.|+++|.-.|.....
T Consensus 457 ~a~cilyy~~~difk~s 473 (695)
T KOG0353|consen 457 KADCILYYGFADIFKIS 473 (695)
T ss_pred cccEEEEechHHHHhHH
Confidence 99999999877665443
No 77
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.4e-33 Score=256.34 Aligned_cols=337 Identities=19% Similarity=0.251 Sum_probs=252.2
Q ss_pred CCHHHHH-HHHHCCCCCCcHHHHHhhhhhhcC------CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 40 IKDDLLR-GIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 40 l~~~~~~-~l~~~~~~~~~~~Q~~~~~~~~~~------~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
....+.+ .+...+| .||..|++++..|... .+-+++|+.|||||.+++++++..+..+.. +.+.+||.-
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q---~ALMAPTEI 322 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQ---AALMAPTEI 322 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCe---eEEeccHHH
Confidence 3444444 4455678 8999999999998864 356999999999999999999998877654 999999999
Q ss_pred HHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHH---Hhc-CCCeEEeChHHHHHHHHccCCCcccceEEecccccccc
Q 015595 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---LEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSR 188 (404)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~ 188 (404)
|+.|.++.+.++...+++++..++|......+... +.+ ..+++|+|+.-+.+- -.+.++.++|+||=|++.-
T Consensus 323 LA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~---V~F~~LgLVIiDEQHRFGV- 398 (677)
T COG1200 323 LAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK---VEFHNLGLVIIDEQHRFGV- 398 (677)
T ss_pred HHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc---eeecceeEEEEeccccccH-
Confidence 99999999999999999999999998765544332 333 489999998555432 2577889999999999533
Q ss_pred CcHHHHHHHHhhCCC-CceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhc
Q 015595 189 GFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 267 (404)
Q Consensus 189 ~~~~~~~~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 267 (404)
.-+..+..-.. .+.++.|||||.|....+.. +++--.-.++.-..-...+...+..........+.+.+-+.
T Consensus 399 ----~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~--fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~- 471 (677)
T COG1200 399 ----HQRLALREKGEQNPHVLVMTATPIPRTLALTA--FGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIA- 471 (677)
T ss_pred ----HHHHHHHHhCCCCCcEEEEeCCCchHHHHHHH--hccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHH-
Confidence 32333333334 57899999999887666543 23221112222222234455555555544444555554444
Q ss_pred CCCCeEEEEecchhhH--------HHHHHHHhhC--CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCC
Q 015595 268 LTITQAVIFCNTKRKV--------DWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 337 (404)
Q Consensus 268 ~~~~k~lIf~~~~~~~--------~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p 337 (404)
.+.++.+.|+-+++. ..++..|+.. ++.+..+||.|+.++++++++.|++|+.+|||||.+.+.|+|+|
T Consensus 472 -~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVP 550 (677)
T COG1200 472 -KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVP 550 (677)
T ss_pred -cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCC
Confidence 467899999977654 4566667643 56799999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCC-CChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccc
Q 015595 338 QVSLVINYDLP-NNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQ 392 (404)
Q Consensus 338 ~~~~vi~~~~p-~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (404)
+++.+|+.+.- .-.+++-|.-||+||.+..+.|++++.+......+.-.+.++..
T Consensus 551 nATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t 606 (677)
T COG1200 551 NATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRET 606 (677)
T ss_pred CCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhc
Confidence 99998887754 56788999999999999999999999988745444555555543
No 78
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=9.3e-34 Score=262.09 Aligned_cols=291 Identities=21% Similarity=0.255 Sum_probs=206.7
Q ss_pred CCCcHHHHHhhhhhhc----CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccC
Q 015595 54 EKPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~~----~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 129 (404)
..|++||++++.++.+ .+..++++|||+|||.+++..+.... .++|||||+.+|+.||.+.+.+.....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~------~~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK------RSTLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc------CCEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 3799999999999998 78899999999999988887665432 129999999999999998887755322
Q ss_pred eeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHH--HHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceE
Q 015595 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDM--IKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQV 207 (404)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~--l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 207 (404)
..+....++..... . ..|.|+|.+.+... +.....+.++++||||||++....+......+ .....+
T Consensus 108 ~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~----~~~~~~ 176 (442)
T COG1061 108 DEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELL----SAAYPR 176 (442)
T ss_pred cccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhh----hcccce
Confidence 12333333332211 1 46999999998874 44444457899999999998776655444443 222228
Q ss_pred EEEeeecchHHHH---HHHhccCCCeEEEecCCc------cccCCceEEEEEe---------------------------
Q 015595 208 VLISATLPHEILE---MTTKFMTDPVKILVKRDE------LTLEGIKQFFVAV--------------------------- 251 (404)
Q Consensus 208 i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--------------------------- 251 (404)
+++||||...... .+...++ +..+.....+ ..+..+.......
T Consensus 177 LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (442)
T COG1061 177 LGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRA 255 (442)
T ss_pred eeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhH
Confidence 9999997632211 1111111 1222211111 1111111111000
Q ss_pred --------cCchhHHHHHHhhhhcC-CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCc
Q 015595 252 --------EREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTR 322 (404)
Q Consensus 252 --------~~~~~~~~~l~~~l~~~-~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 322 (404)
.....+...+..++... .+.+++||+.+..+++.++..|...+. +..+.+.++..+|..+++.|+.|..+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~ 334 (442)
T COG1061 256 ENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIK 334 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 01111334444444443 467899999999999999999998877 88999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCC
Q 015595 323 VLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF 364 (404)
Q Consensus 323 vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 364 (404)
+|+++.++.+|+|+|+++++|+.++..|...|+||+||+.|.
T Consensus 335 ~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 335 VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999999999999999994
No 79
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-33 Score=242.74 Aligned_cols=328 Identities=18% Similarity=0.260 Sum_probs=236.3
Q ss_pred HHHHHHHH-CCCC-CCcHHHHHhhhhhhcC-CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHH
Q 015595 43 DLLRGIYQ-YGFE-KPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (404)
Q Consensus 43 ~~~~~l~~-~~~~-~~~~~Q~~~~~~~~~~-~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~ 119 (404)
.+.++|++ +|+. .-++.|+.++..+..+ .++.|++|||+||+++|.++.+-. + ..+|++.|..+|+.++.+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~---gITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---G---GITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---C---CeEEEehHHHHHHHHHHH
Confidence 34566665 4554 3589999999998875 689999999999999999988642 1 259999999999999888
Q ss_pred HHHHHccccCeeEEEEEcCcchHHHHHH---H---hcCCCeEEeChHHHH-----HHHHcc-CCCcccceEEeccccccc
Q 015595 120 VILAIGDFINIQAHACVGGKSVGEDIRK---L---EHGVHVVSGTPGRVC-----DMIKRK-TLRTRAIKLLDESDEMLS 187 (404)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~iiv~T~~~l~-----~~l~~~-~~~~~~~vIiDE~h~~~~ 187 (404)
-+.++. +.+..+....+..++.+. + .....+++.||+... .++... .-+.+.++++||+|.++.
T Consensus 80 HL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQ 155 (641)
T KOG0352|consen 80 HLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQ 155 (641)
T ss_pred HHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhh
Confidence 887754 333333332222222221 1 234678999997633 333221 234458889999999987
Q ss_pred cC--cHHHHH---HHHhhCCCCceEEEEeeecchHHHHHHHh--ccCCCeEEEecCCccccCCceEEEEEecCc---hhH
Q 015595 188 RG--FKDQIY---DVYRYLPPDLQVVLISATLPHEILEMTTK--FMTDPVKILVKRDELTLEGIKQFFVAVERE---EWK 257 (404)
Q Consensus 188 ~~--~~~~~~---~~~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 257 (404)
++ |.+... .+...+ .....+++|||.++.+.+.+.. .+..|+.+....... . +.++.+... .+-
T Consensus 156 WGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR--~---NLFYD~~~K~~I~D~ 229 (641)
T KOG0352|consen 156 WGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR--D---NLFYDNHMKSFITDC 229 (641)
T ss_pred hccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh--h---hhhHHHHHHHHhhhH
Confidence 74 333332 333333 3667899999999887776543 345565554322211 1 111111111 111
Q ss_pred HHHHHhhhhcC-------------CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 015595 258 FDTLCDLYDTL-------------TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVL 324 (404)
Q Consensus 258 ~~~l~~~l~~~-------------~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 324 (404)
+..|.++-... ..+..||||.++++++.++-.|...|+.+..+|+++...+|.++.+.|.+++..|+
T Consensus 230 ~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 230 LTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred hHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 22222222211 12468999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHH
Q 015595 325 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 386 (404)
Q Consensus 325 v~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 386 (404)
+||-..++|+|-|++++|++++.|.|+.-|.|-.||+||.|....|-++|...|...+.-+.
T Consensus 310 ~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 310 AATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred EEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887665443
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.8e-32 Score=266.07 Aligned_cols=334 Identities=17% Similarity=0.171 Sum_probs=221.0
Q ss_pred CCcHHHHHhhhhhhcC--CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeE
Q 015595 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~ 132 (404)
.|.|||.+++..++.. .++++...+|.|||..+.+.+...+..+ ...++|||||. +|..||..++.+.. ++..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~-sL~~QW~~El~~kF---~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPE-TLQHQWLVEMLRRF---NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCH-HHHHHHHHHHHHHh---CCCe
Confidence 6999999998877653 4789999999999988877666555444 33569999996 89999999986533 2333
Q ss_pred EEEEcCcchHHHH--HHHhcCCCeEEeChHHHHHH---HHccCCCcccceEEeccccccccC--cHHHHHHHHhhCCCCc
Q 015595 133 HACVGGKSVGEDI--RKLEHGVHVVSGTPGRVCDM---IKRKTLRTRAIKLLDESDEMLSRG--FKDQIYDVYRYLPPDL 205 (404)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~~~~iiv~T~~~l~~~---l~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~~~~~~~~~~~ 205 (404)
..+.++....... .......+++|+|.+.+... .....-..++++|+||||++.... .......+.....+..
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~ 306 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIP 306 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccC
Confidence 3333222110000 01112468999999877642 222223467999999999986321 1112222222222345
Q ss_pred eEEEEeeecch-HHHH------------------H-------------HH-----------------hccCCC-------
Q 015595 206 QVVLISATLPH-EILE------------------M-------------TT-----------------KFMTDP------- 229 (404)
Q Consensus 206 ~~i~~SAT~~~-~~~~------------------~-------------~~-----------------~~~~~~------- 229 (404)
.++++||||.. ...+ + +. .++.+.
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 78999999731 0000 0 00 000000
Q ss_pred --------------------------eEEEecCCccc----cCCceEEE-EEe---------------------------
Q 015595 230 --------------------------VKILVKRDELT----LEGIKQFF-VAV--------------------------- 251 (404)
Q Consensus 230 --------------------------~~~~~~~~~~~----~~~~~~~~-~~~--------------------------- 251 (404)
..+........ +....+.+ ...
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~ 466 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQ 466 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHH
Confidence 00000000000 00000000 000
Q ss_pred --------cCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHh-hCCCeEEEecCCCCHHHHHHHHHHHhcC--C
Q 015595 252 --------EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR-GYNFTVSSMHGDMPQKERDAIMGEFRSG--T 320 (404)
Q Consensus 252 --------~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~ 320 (404)
...+.|...|.++++...+.|+||||++...+..+.+.|+ ..|+.+..+||+++..+|+++++.|+++ .
T Consensus 467 ~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~ 546 (956)
T PRK04914 467 EFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG 546 (956)
T ss_pred HHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC
Confidence 0112356677778887778899999999999999999994 5699999999999999999999999974 5
Q ss_pred CcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHcccc
Q 015595 321 TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQI 393 (404)
Q Consensus 321 ~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (404)
..|||||+++++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+.+++....-..-..+.+.+.+.+
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 8999999999999999999999999999999999999999999999987766655443334455666565544
No 81
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.3e-31 Score=264.88 Aligned_cols=302 Identities=20% Similarity=0.310 Sum_probs=205.8
Q ss_pred cHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEccc----HHHHHHHHHHHHH-HccccCee
Q 015595 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT----RELATQTEKVILA-IGDFINIQ 131 (404)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~----~~L~~q~~~~~~~-~~~~~~~~ 131 (404)
+.+..+++..+.+++.++++|+||||||+.... ++.....+. ...+++.-|. ++++.+..+++.. ++...|..
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq-~lle~g~g~-~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~ 153 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPK-ICLELGRGV-KGLIGHTQPRRLAARTVANRIAEELETELGGCVGYK 153 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHH-HHHHcCCCC-CCceeeCCCcHHHHHHHHHHHHHHHhhhhcceecee
Confidence 445556777777777788999999999985332 332222221 1234444575 4777777777664 33322322
Q ss_pred EEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc-CCCcccceEEecccc-ccccCcHHH-HHHHHhhCCCCceEE
Q 015595 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDE-MLSRGFKDQ-IYDVYRYLPPDLQVV 208 (404)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~-~~~~~~~~~-~~~~~~~~~~~~~~i 208 (404)
+ .-. . ....++.|+++|++.+++.+... .+..++++||||+|. ..+.++... +..++.. .++.|+|
T Consensus 154 v----rf~---~---~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKvI 222 (1294)
T PRK11131 154 V----RFN---D---QVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVI 222 (1294)
T ss_pred e----cCc---c---ccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhc-CCCceEE
Confidence 1 111 1 11346899999999999988764 578899999999995 666665432 3333322 2468999
Q ss_pred EEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCc-----hhHHHHHHhhh---hcCCCCeEEEEecch
Q 015595 209 LISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE-----EWKFDTLCDLY---DTLTITQAVIFCNTK 280 (404)
Q Consensus 209 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~l---~~~~~~k~lIf~~~~ 280 (404)
+||||++.+ .+...+...| .+.+..... .+...|...... ......+...+ .....+++|||+++.
T Consensus 223 LmSATid~e--~fs~~F~~ap-vI~V~Gr~~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~ 296 (1294)
T PRK11131 223 ITSATIDPE--RFSRHFNNAP-IIEVSGRTY---PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGE 296 (1294)
T ss_pred EeeCCCCHH--HHHHHcCCCC-EEEEcCccc---cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Confidence 999999753 3444443344 344433322 244444443221 11222222221 234567899999999
Q ss_pred hhHHHHHHHHhhCCCe---EEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccC----------
Q 015595 281 RKVDWLTEKMRGYNFT---VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL---------- 347 (404)
Q Consensus 281 ~~~~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~---------- 347 (404)
.+++.+++.|+..++. +..+||+++..+|..+++. .|..+|+|||+++++|+|+|++++||+++.
T Consensus 297 ~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~ 374 (1294)
T PRK11131 297 REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRT 374 (1294)
T ss_pred HHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccccc
Confidence 9999999999987653 6789999999999999875 477899999999999999999999999862
Q ss_pred -----C---CChhhhhhhccccCCCCCceeEEEEeccCcHH
Q 015595 348 -----P---NNRELYIHRIGRSGRFGRKGVAINFVKNDDIK 380 (404)
Q Consensus 348 -----p---~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 380 (404)
| .|..+|.||.||+||. ++|.|+.++++++..
T Consensus 375 ~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 375 KVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred CcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 2 4568899999999999 689999999986644
No 82
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.3e-31 Score=250.20 Aligned_cols=309 Identities=19% Similarity=0.289 Sum_probs=230.9
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.+| +|-.+|++++.++.+|.+++|.|+|.+|||+++-.++.-. ..+..|++|..|-++|.+|.++.|++-....|
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala---q~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg- 368 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA---QKHMTRTIYTSPIKALSNQKFRDFKETFGDVG- 368 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH---HhhccceEecchhhhhccchHHHHHHhccccc-
Confidence 455 8999999999999999999999999999999887766543 23346799999999999999999988654444
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEE
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 208 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 208 (404)
+++|+....+ ...++|+|.+.|.+++-+. .+..+..|||||+|.+.+..-+-.+..++-.+|++.++|
T Consensus 369 ---LlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~I 438 (1248)
T KOG0947|consen 369 ---LLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFI 438 (1248)
T ss_pred ---eeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEE
Confidence 6777765443 4889999999999999876 578899999999999999888888999999999999999
Q ss_pred EEeeecchH--HHHHHHhccCCCeEEEecCCccccCCceEEEEEe-------cCc-------------------------
Q 015595 209 LISATLPHE--ILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAV-------ERE------------------------- 254 (404)
Q Consensus 209 ~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------------------------- 254 (404)
++|||.|+. ..+|+.+.-.. .+++.+....+-.++++...- +..
T Consensus 439 lLSATVPN~~EFA~WIGRtK~K--~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~ 516 (1248)
T KOG0947|consen 439 LLSATVPNTLEFADWIGRTKQK--TIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVE 516 (1248)
T ss_pred EEeccCCChHHHHHHhhhccCc--eEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccc
Confidence 999999875 33333332222 222222211111122111100 000
Q ss_pred --------------------------------hh---HHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCe---
Q 015595 255 --------------------------------EW---KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT--- 296 (404)
Q Consensus 255 --------------------------------~~---~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~--- 296 (404)
.. ..-.+...++...--++|+||-|++.|++.+++|...++.
T Consensus 517 ~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~ 596 (1248)
T KOG0947|consen 517 KSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSK 596 (1248)
T ss_pred cccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccch
Confidence 00 0112222233333347999999999999999999766422
Q ss_pred ------------------------------------EEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCC
Q 015595 297 ------------------------------------VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVS 340 (404)
Q Consensus 297 ------------------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~ 340 (404)
+..+||++-+--++-+...|+.|-++||+||.++++|+|+|.-.
T Consensus 597 EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARt 676 (1248)
T KOG0947|consen 597 EKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPART 676 (1248)
T ss_pred hHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCcee
Confidence 77899999999999999999999999999999999999999655
Q ss_pred EEEEccC---------CCChhhhhhhccccCCCCCc--eeEEEEeccC
Q 015595 341 LVINYDL---------PNNRELYIHRIGRSGRFGRK--GVAINFVKND 377 (404)
Q Consensus 341 ~vi~~~~---------p~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~ 377 (404)
+|+ -+. -..+.+|.|+.|||||.|-+ |.+++++...
T Consensus 677 vVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 677 VVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred EEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 554 332 24688999999999999865 7777776654
No 83
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=3.4e-32 Score=234.18 Aligned_cols=274 Identities=32% Similarity=0.500 Sum_probs=212.1
Q ss_pred eeEEEEcccHHHHHHHHHHHHHHcc---ccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccC--CCcccc
Q 015595 102 VQALILSPTRELATQTEKVILAIGD---FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAI 176 (404)
Q Consensus 102 ~~~lil~p~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~~ 176 (404)
+.++|+-|+++|++|....++++.. ...++..+..||.....+...+.++.+|+|+||.++...+.... +....+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 3499999999999999997776543 33445557788888888888889999999999999999998864 455889
Q ss_pred eEEeccccccccCcHHHHHHHHhhCCC------CceEEEEeeecch-HHHHHHHhccCCCeEEEecCCccccCCceEEEE
Q 015595 177 KLLDESDEMLSRGFKDQIYDVYRYLPP------DLQVVLISATLPH-EILEMTTKFMTDPVKILVKRDELTLEGIKQFFV 249 (404)
Q Consensus 177 vIiDE~h~~~~~~~~~~~~~~~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (404)
+++||++.++...+...+.++...+|. ..|.+++|||+.- ++..+..+.+.-|.-+....++..+..+.+...
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 999999999999999999999888863 5789999999853 222333344444555555555444444333332
Q ss_pred EecCc-hh----------------------------HH---------HHHHhhhhcCCCCeEEEEecchhhHHHHHHHHh
Q 015595 250 AVERE-EW----------------------------KF---------DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR 291 (404)
Q Consensus 250 ~~~~~-~~----------------------------~~---------~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~ 291 (404)
..... .. .. +.-...+++....++||||.++-.++.+.+++.
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 22111 00 11 111223344455789999999999999999998
Q ss_pred hC---CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCce
Q 015595 292 GY---NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG 368 (404)
Q Consensus 292 ~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~ 368 (404)
+. .+.|+.+||+..+.+|.+-++.|+....++||||+++.+|+|+..+-++|.+.+|.+...|.||+||+||.-+.|
T Consensus 527 qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermg 606 (725)
T KOG0349|consen 527 QKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMG 606 (725)
T ss_pred HcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcc
Confidence 86 468999999999999999999999999999999999999999999999999999999999999999999987666
Q ss_pred eEEEEec
Q 015595 369 VAINFVK 375 (404)
Q Consensus 369 ~~~~~~~ 375 (404)
.++.++.
T Consensus 607 laislva 613 (725)
T KOG0349|consen 607 LAISLVA 613 (725)
T ss_pred eeEEEee
Confidence 6665544
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=3.5e-30 Score=249.67 Aligned_cols=307 Identities=19% Similarity=0.207 Sum_probs=211.8
Q ss_pred CCcHHHHHhhhhhhcC---CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCee
Q 015595 55 KPSAIQQRAVMPIIKG---RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~---~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~ 131 (404)
.|+++|+++++.+.++ +++++.++||||||.+++.++...+..+ .++|+++|+++|+.|+.+.+++.. +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g---~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG---KQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 6899999999999874 7799999999999999988877776543 469999999999999999998743 467
Q ss_pred EEEEEcCcchHHHHHH---Hh-cCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCc------HHHHHHHHhhC
Q 015595 132 AHACVGGKSVGEDIRK---LE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGF------KDQIYDVYRYL 201 (404)
Q Consensus 132 ~~~~~~~~~~~~~~~~---~~-~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~------~~~~~~~~~~~ 201 (404)
+..++++.+..++... .. ...+|+|+|+..+. ..+.+++++|+||+|....... ...+. ..+..
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~~ra~ 291 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-VVRAK 291 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHHH-HHHhh
Confidence 8888888766544332 22 35799999997764 3467789999999998654321 12222 22233
Q ss_pred CCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecC----------chhHHHHHHhhhhcCCCC
Q 015595 202 PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER----------EEWKFDTLCDLYDTLTIT 271 (404)
Q Consensus 202 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~l~~~~~~ 271 (404)
..+.+++++|||++.+........ ....+..................... .....+.+.+.++ .+.
T Consensus 292 ~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~--~g~ 367 (679)
T PRK05580 292 LENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE--RGE 367 (679)
T ss_pred ccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH--cCC
Confidence 457889999999987655544321 11111111111101011111111100 0112222333332 244
Q ss_pred eEEEEecch------------------------------------------------------------hhHHHHHHHHh
Q 015595 272 QAVIFCNTK------------------------------------------------------------RKVDWLTEKMR 291 (404)
Q Consensus 272 k~lIf~~~~------------------------------------------------------------~~~~~l~~~l~ 291 (404)
+++||+|.+ .-++++++.|+
T Consensus 368 qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~ 447 (679)
T PRK05580 368 QVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELA 447 (679)
T ss_pred eEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHH
Confidence 677776642 13467777777
Q ss_pred hC--CCeEEEecCCCC--HHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCC--CC----------hhhhh
Q 015595 292 GY--NFTVSSMHGDMP--QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP--NN----------RELYI 355 (404)
Q Consensus 292 ~~--~~~~~~~~~~~~--~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p--~s----------~~~~~ 355 (404)
+. +..+..+|+++. ..+++++++.|++|+.+|||+|+++++|+|+|+++.|+.++.. .+ ...|.
T Consensus 448 ~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~ 527 (679)
T PRK05580 448 ELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLT 527 (679)
T ss_pred HhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHH
Confidence 75 678899999986 4578899999999999999999999999999999999766543 22 25689
Q ss_pred hhccccCCCCCceeEEEEeccC
Q 015595 356 HRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 356 Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
|++||+||.++.|.+++.....
T Consensus 528 q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 528 QVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred HHHhhccCCCCCCEEEEEeCCC
Confidence 9999999999999999766543
No 85
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.9e-30 Score=250.01 Aligned_cols=320 Identities=18% Similarity=0.216 Sum_probs=249.8
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHhhhhhhcC------CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 40 IKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 40 l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~------~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
.+...++.+.+ ++| +-|+-|..+++.+.+. .+-+|||+.|.|||.+++-++......+ ..|.++|||.-
T Consensus 579 ~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G---KQVAvLVPTTl 654 (1139)
T COG1197 579 PDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG---KQVAVLVPTTL 654 (1139)
T ss_pred CChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC---CeEEEEcccHH
Confidence 33444444443 455 7899999999988763 4789999999999999888877666554 45999999999
Q ss_pred HHHHHHHHHHHHccccCeeEEEEEcCcchHHHH---HHHh-cCCCeEEeChHHHHHHHHcc-CCCcccceEEeccccccc
Q 015595 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDEMLS 187 (404)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~~~~ 187 (404)
|++|.++.+++-+..+++++..++-=.+..+.. ..+. ...+|+|+|+ +++.+. .+.+++++||||-|++
T Consensus 655 LA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL~kdv~FkdLGLlIIDEEqRF-- 728 (1139)
T COG1197 655 LAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLLSKDVKFKDLGLLIIDEEQRF-- 728 (1139)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech----HhhCCCcEEecCCeEEEechhhc--
Confidence 999999999998888899988876544433332 2333 3589999998 666654 6888899999999995
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhc
Q 015595 188 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 267 (404)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 267 (404)
+-.-+.-++.++.+.-++-|||||.|....+....+.+-..+...+ .....++.++...+...-+...+.++.+
T Consensus 729 ---GVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP--~~R~pV~T~V~~~d~~~ireAI~REl~R- 802 (1139)
T COG1197 729 ---GVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP--EDRLPVKTFVSEYDDLLIREAILRELLR- 802 (1139)
T ss_pred ---CccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC--CCCcceEEEEecCChHHHHHHHHHHHhc-
Confidence 4334445555567888999999999988888777666544433322 2233445555555554434444444443
Q ss_pred CCCCeEEEEecchhhHHHHHHHHhhC--CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEc
Q 015595 268 LTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINY 345 (404)
Q Consensus 268 ~~~~k~lIf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~ 345 (404)
++++...+|.++..+.++..|+.. ...+.+.||.|+..+-+.++..|.+|+.+|||||.+.+.|+|+|+++++|+.
T Consensus 803 --gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe 880 (1139)
T COG1197 803 --GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIE 880 (1139)
T ss_pred --CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEe
Confidence 689999999999999999999987 4578899999999999999999999999999999999999999999999987
Q ss_pred cCC-CChhhhhhhccccCCCCCceeEEEEeccC
Q 015595 346 DLP-NNRELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 346 ~~p-~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
+.. .-.+++.|.-||+||.++.+.+|+++.+.
T Consensus 881 ~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 881 RADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred ccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 754 45789999999999999999999999975
No 86
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=2.9e-30 Score=252.07 Aligned_cols=307 Identities=18% Similarity=0.229 Sum_probs=199.5
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHcccc--CeeE
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI--NIQA 132 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~--~~~~ 132 (404)
.|||+|+.+.........+++.+|||+|||.+++.++...+..+ ...+++|..||.++++++++++.++.... ...+
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~-~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v 364 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG-LADSIIFALPTQATANAMLSRLEALASKLFPSPNL 364 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-CCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 79999998754433455689999999999999888766544333 34579999999999999999987643221 3456
Q ss_pred EEEEcCcchHHHHH--------------------H-Hh------cCCCeEEeChHHHHHHHHcc---CCC----cccceE
Q 015595 133 HACVGGKSVGEDIR--------------------K-LE------HGVHVVSGTPGRVCDMIKRK---TLR----TRAIKL 178 (404)
Q Consensus 133 ~~~~~~~~~~~~~~--------------------~-~~------~~~~iiv~T~~~l~~~l~~~---~~~----~~~~vI 178 (404)
.+.+|......... . +. --.+|+|||.++++...-.. .+. ..+++|
T Consensus 365 ~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvI 444 (878)
T PRK09694 365 ILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLI 444 (878)
T ss_pred EeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEE
Confidence 66666543211100 0 00 12689999999888433221 111 235889
Q ss_pred EeccccccccCcHHHHHHHHhhC-CCCceEEEEeeecchHHHHHHHhccCCC--------eEEEecC-----Ccccc--C
Q 015595 179 LDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDP--------VKILVKR-----DELTL--E 242 (404)
Q Consensus 179 iDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~--------~~~~~~~-----~~~~~--~ 242 (404)
|||+|.+-. .....+..+++.+ ....++|+||||+|......+..-+... +...... ..... .
T Consensus 445 iDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~ 523 (878)
T PRK09694 445 VDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAH 523 (878)
T ss_pred EechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecccc
Confidence 999998633 2334445554443 2356799999999987766543322110 0000000 00000 0
Q ss_pred ----CceEEE--EEe--cCchhHHHHHHhhhhc-CCCCeEEEEecchhhHHHHHHHHhhCC---CeEEEecCCCCHHHHH
Q 015595 243 ----GIKQFF--VAV--EREEWKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGYN---FTVSSMHGDMPQKERD 310 (404)
Q Consensus 243 ----~~~~~~--~~~--~~~~~~~~~l~~~l~~-~~~~k~lIf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~ 310 (404)
...... ... .........+..+++. ..+++++||||+++.|+.+++.|++.+ ..+..+|+.++..+|.
T Consensus 524 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~ 603 (878)
T PRK09694 524 PEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRR 603 (878)
T ss_pred ccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHH
Confidence 011111 111 1111122333344432 346789999999999999999999764 5799999999999984
Q ss_pred ----HHHHHH-hcCC---CcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCC
Q 015595 311 ----AIMGEF-RSGT---TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 366 (404)
Q Consensus 311 ----~~~~~f-~~~~---~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~ 366 (404)
++++.| ++++ ..|||+|+++++|+|+ +++.+|....| .+.++||+||++|.+.
T Consensus 604 ~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 604 EKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 566777 5555 4799999999999999 57888877555 7899999999999875
No 87
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=5.6e-31 Score=251.89 Aligned_cols=335 Identities=17% Similarity=0.274 Sum_probs=248.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcC-CcEEEEcCCCCchhhHhHHHHHhhhhcCCC--------ceeEEEEc
Q 015595 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSR--------EVQALILS 108 (404)
Q Consensus 38 ~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~--------~~~~lil~ 108 (404)
.++++|-+.++.... .+++.|.......+.+ .++++|||||+|||.++++.+++.+..+.+ ..++.|++
T Consensus 294 selP~Wnq~aF~g~~--sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 294 SELPKWNQPAFFGKQ--SLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIA 371 (1674)
T ss_pred cCCcchhhhhcccch--hhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEe
Confidence 356777777775543 4999999999988776 578999999999999999999998865432 45899999
Q ss_pred ccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc----CCCcccceEEecccc
Q 015595 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLDESDE 184 (404)
Q Consensus 109 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~----~~~~~~~vIiDE~h~ 184 (404)
|.++|+++|...+.+-...+++++.-.+|+....... ..+.+++|+||+++.-.-++. -.+-++++|+||.|.
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhh
Confidence 9999999999999998889999999999886643321 135899999999986555542 234568889999997
Q ss_pred ccccCcHHHHH----HHHhhC---CCCceEEEEeeecchHHHHHHHhccC-CCeEEEecCCccccCCceEEEEEecCch-
Q 015595 185 MLSRGFKDQIY----DVYRYL---PPDLQVVLISATLPHEILEMTTKFMT-DPVKILVKRDELTLEGIKQFFVAVEREE- 255 (404)
Q Consensus 185 ~~~~~~~~~~~----~~~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 255 (404)
+-+.- ++.+. +..... ...++++++|||+|+-. ....++. ++..+.....++.+..+.+.+..+....
T Consensus 449 LhDdR-GpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~--DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 449 LHDDR-GPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE--DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKP 525 (1674)
T ss_pred ccccc-chHHHHHHHHHHHHhhhcccCceeeeecccCCchh--hhHHHhccCcccccccCcccCcCCccceEeccccCCc
Confidence 64432 33332 222222 34789999999999842 2223322 3334444455566666666666554332
Q ss_pred hHH------HHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhC------------------------------------
Q 015595 256 WKF------DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY------------------------------------ 293 (404)
Q Consensus 256 ~~~------~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~------------------------------------ 293 (404)
.+. .....+++....+++|||+.|++++.+.++.++..
T Consensus 526 ~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdL 605 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDL 605 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHH
Confidence 121 34456777777789999999999998888887622
Q ss_pred -CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE----ccC------CCChhhhhhhccccC
Q 015595 294 -NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YDL------PNNRELYIHRIGRSG 362 (404)
Q Consensus 294 -~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~----~~~------p~s~~~~~Q~~GR~~ 362 (404)
.+.+.++|++|++.+|..+.+.|.+|.++|+|+|.++++|+|+|.-..+|- |++ +.++.+.+||+||+|
T Consensus 606 LpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 606 LPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred hhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 134789999999999999999999999999999999999999997666652 332 358889999999999
Q ss_pred CCCCc--eeEEEEeccCcHH
Q 015595 363 RFGRK--GVAINFVKNDDIK 380 (404)
Q Consensus 363 R~g~~--~~~~~~~~~~~~~ 380 (404)
|.+-+ |..+.+-...+.-
T Consensus 686 rp~~D~~gegiiit~~se~q 705 (1674)
T KOG0951|consen 686 RPQYDTCGEGIIITDHSELQ 705 (1674)
T ss_pred CCccCcCCceeeccCchHhh
Confidence 98644 6666665554443
No 88
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.98 E-value=2.5e-30 Score=217.46 Aligned_cols=198 Identities=45% Similarity=0.794 Sum_probs=177.1
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC--CCceeEEEEcccHH
Q 015595 35 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS--SREVQALILSPTRE 112 (404)
Q Consensus 35 ~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~--~~~~~~lil~p~~~ 112 (404)
|+++++++.+.+.+.+.|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 6788999999999999999999999999999999999999999999999999999998888776 45678999999999
Q ss_pred HHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCc
Q 015595 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGF 190 (404)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~ 190 (404)
|+.|+...++++....++.+..+.|+............+++|+|+||+.+..++.+. .+..++++|+||+|.+.+..+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 999999999998877788888889888876666666668999999999999988776 456789999999999988888
Q ss_pred HHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEE
Q 015595 191 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKI 232 (404)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 232 (404)
...+..+...++.+.+++++|||+++........++.+++.+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 888999999998899999999999999989888888877654
No 89
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.9e-31 Score=241.41 Aligned_cols=311 Identities=19% Similarity=0.302 Sum_probs=235.6
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEE
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~ 134 (404)
++-|+|..++..+-++.+++|+|.|.+|||.++-.+++..+.... |+||..|-++|.+|.++++..-++ .+++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ---RVIYTSPIKALSNQKYREl~~EF~----DVGL 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ---RVIYTSPIKALSNQKYRELLEEFK----DVGL 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC---eEEeeChhhhhcchhHHHHHHHhc----ccce
Confidence 789999999999999999999999999999999998888886655 499999999999999999877553 4445
Q ss_pred EEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEee
Q 015595 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 212 (404)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 212 (404)
.+|+.... ..+..+|+|.+.|..++-+. .+.-+..|||||+|.+-+...+-.+...+-.+|.+.+.+++||
T Consensus 202 MTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 MTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 66665543 34789999999999999876 4677889999999999888767677777788899999999999
Q ss_pred ecchH--HHHHHHhccCCCeEEEecCCccccCCceEEEEE---------ecCc----hhHHHHHHh--------------
Q 015595 213 TLPHE--ILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA---------VERE----EWKFDTLCD-------------- 263 (404)
Q Consensus 213 T~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----~~~~~~l~~-------------- 263 (404)
|+|+. ..+|+...-..|.++.... +.+..++|+... ++.. ++.+.....
T Consensus 275 TiPNA~qFAeWI~~ihkQPcHVVYTd--yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~ 352 (1041)
T KOG0948|consen 275 TIPNARQFAEWICHIHKQPCHVVYTD--YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKA 352 (1041)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEeec--CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccc
Confidence 99875 3344444455666665433 223333443221 2211 111111111
Q ss_pred ------------------------hhhcCCCCeEEEEecchhhHHHHHHHHhhCCCe-----------------------
Q 015595 264 ------------------------LYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT----------------------- 296 (404)
Q Consensus 264 ------------------------~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~----------------------- 296 (404)
.+-.....++|||+-|+++|+.++-.+.++.++
T Consensus 353 ~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeD 432 (1041)
T KOG0948|consen 353 NKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEED 432 (1041)
T ss_pred ccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhh
Confidence 111122347999999999999999888765322
Q ss_pred ----------------EEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccC--------CCChh
Q 015595 297 ----------------VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL--------PNNRE 352 (404)
Q Consensus 297 ----------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~--------p~s~~ 352 (404)
+.++|+++-+--++.+.-.|++|-+++|+||.+.+.|+|+|.-+.|+-.-. -.|..
T Consensus 433 r~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissG 512 (1041)
T KOG0948|consen 433 RELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSG 512 (1041)
T ss_pred ccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeeccc
Confidence 789999999999999999999999999999999999999996655543211 24678
Q ss_pred hhhhhccccCCCCCc--eeEEEEeccC-cHHH
Q 015595 353 LYIHRIGRSGRFGRK--GVAINFVKND-DIKI 381 (404)
Q Consensus 353 ~~~Q~~GR~~R~g~~--~~~~~~~~~~-~~~~ 381 (404)
.|+|+.|||||.|.+ |.|++++++. +...
T Consensus 513 EYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ 544 (1041)
T KOG0948|consen 513 EYIQMSGRAGRRGIDDRGIVILMIDEKMEPQV 544 (1041)
T ss_pred ceEEecccccccCCCCCceEEEEecCcCCHHH
Confidence 899999999999865 8888888876 4433
No 90
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=3.8e-29 Score=209.50 Aligned_cols=312 Identities=17% Similarity=0.170 Sum_probs=227.5
Q ss_pred CCcHHHHHhhhhhh----cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
++++.|+.+-+.+. +..+.++.|-||+|||.+....+...+..+. ++.+.+|+...+.+.+.++++.. .+.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~---~vciASPRvDVclEl~~Rlk~aF--~~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGG---RVCIASPRVDVCLELYPRLKQAF--SNC 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCC---eEEEecCcccchHHHHHHHHHhh--ccC
Confidence 68999998766544 4688999999999999988877777776654 59999999999999999998854 346
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEE
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 210 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 210 (404)
.+..++|+.....+ ..++|+|..+++++ .+.+|++|+||+|.+.-......-..+.+........|.+
T Consensus 172 ~I~~Lyg~S~~~fr-------~plvVaTtHQLlrF-----k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~Iyl 239 (441)
T COG4098 172 DIDLLYGDSDSYFR-------APLVVATTHQLLRF-----KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYL 239 (441)
T ss_pred CeeeEecCCchhcc-------ccEEEEehHHHHHH-----HhhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEE
Confidence 77788887765433 78899998888866 3456899999999876554444445555555566778999
Q ss_pred eeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHH------HHHHhhhhcC--CCCeEEEEecchhh
Q 015595 211 SATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF------DTLCDLYDTL--TITQAVIFCNTKRK 282 (404)
Q Consensus 211 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~l~~~--~~~k~lIf~~~~~~ 282 (404)
|||+++.+..-+.. ++...+....+....+-....+.++..-..++ ..+..+++.. .+.+++||+++++.
T Consensus 240 TATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~ 317 (441)
T COG4098 240 TATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIET 317 (441)
T ss_pred ecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHH
Confidence 99999876665443 22222333333332222223333332222121 2455666543 44689999999999
Q ss_pred HHHHHHHHhh-CC-CeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCC--CChhhhhhhc
Q 015595 283 VDWLTEKMRG-YN-FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP--NNRELYIHRI 358 (404)
Q Consensus 283 ~~~l~~~l~~-~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p--~s~~~~~Q~~ 358 (404)
+++++..|+. .. ..+..+|+. +..|.+.+++|++|+..+||+|.++++|+.+|+++..++-..- .+.+.++|..
T Consensus 318 ~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIa 395 (441)
T COG4098 318 MEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIA 395 (441)
T ss_pred HHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHh
Confidence 9999999954 33 345777876 5688999999999999999999999999999999988875533 6788899999
Q ss_pred cccCCCC--CceeEEEEeccCcHHHHHHHHH
Q 015595 359 GRSGRFG--RKGVAINFVKNDDIKILRDIEQ 387 (404)
Q Consensus 359 GR~~R~g--~~~~~~~~~~~~~~~~~~~~~~ 387 (404)
||+||.- -+|.+..|.......+.+..++
T Consensus 396 GRvGRs~~~PtGdv~FFH~G~skaM~~A~ke 426 (441)
T COG4098 396 GRVGRSLERPTGDVLFFHYGKSKAMKQARKE 426 (441)
T ss_pred hhccCCCcCCCCcEEEEeccchHHHHHHHHH
Confidence 9999973 3488888888776665554443
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=5.2e-29 Score=233.17 Aligned_cols=288 Identities=19% Similarity=0.241 Sum_probs=193.2
Q ss_pred EEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHH---HHh-
Q 015595 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLE- 149 (404)
Q Consensus 74 iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~- 149 (404)
++.|+||||||.+++..+...+..+ .++||++|+.+|+.|+.+.+++.. +..+..++++.+..++.. ...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g---~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG---KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 4789999999999987776666543 359999999999999999998753 456777888766554432 222
Q ss_pred cCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccC-----c-HHHHHHHHhhCCCCceEEEEeeecchHHHHHHH
Q 015595 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRG-----F-KDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 223 (404)
Q Consensus 150 ~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~-----~-~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 223 (404)
...+|+|+|+..+. ..+.+++++||||.|.....+ | ...+...... ..+.++|++||||+.+......
T Consensus 75 g~~~IVVGTrsalf-----~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPsles~~~~~ 148 (505)
T TIGR00595 75 GEILVVIGTRSALF-----LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPSLESYHNAK 148 (505)
T ss_pred CCCCEEECChHHHc-----CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCCHHHHHHHh
Confidence 35799999997664 346778999999999876432 1 1222222222 3577899999998876555443
Q ss_pred hccCCCeEEEec-CCccccCCceEEEEEecCch-------hHHHHHHhhhhcCCCCeEEEEecchhh-------------
Q 015595 224 KFMTDPVKILVK-RDELTLEGIKQFFVAVEREE-------WKFDTLCDLYDTLTITQAVIFCNTKRK------------- 282 (404)
Q Consensus 224 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~~~k~lIf~~~~~~------------- 282 (404)
. + ....... .................... ...+.+.+.++. ++++|||+|.+..
T Consensus 149 ~--g-~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~--g~qvLvflnrrGya~~~~C~~Cg~~~ 223 (505)
T TIGR00595 149 Q--K-AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA--GEQSILFLNRRGYSKNLLCRSCGYIL 223 (505)
T ss_pred c--C-CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHc--CCcEEEEEeCCcCCCeeEhhhCcCcc
Confidence 2 1 1111111 11111111111111111111 122333333332 4578999765432
Q ss_pred -----------------------------------------------HHHHHHHHhhC--CCeEEEecCCCCHHHH--HH
Q 015595 283 -----------------------------------------------VDWLTEKMRGY--NFTVSSMHGDMPQKER--DA 311 (404)
Q Consensus 283 -----------------------------------------------~~~l~~~l~~~--~~~~~~~~~~~~~~~r--~~ 311 (404)
.+++++.|++. +..+..+|++++...+ +.
T Consensus 224 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~ 303 (505)
T TIGR00595 224 CCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEA 303 (505)
T ss_pred CCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHH
Confidence 47778888776 6688999999876655 88
Q ss_pred HHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCC------------ChhhhhhhccccCCCCCceeEEEEe-ccCc
Q 015595 312 IMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPN------------NRELYIHRIGRSGRFGRKGVAINFV-KNDD 378 (404)
Q Consensus 312 ~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~------------s~~~~~Q~~GR~~R~g~~~~~~~~~-~~~~ 378 (404)
+++.|++|+.+|||+|++++.|+|+|+++.|+.++... ....|.|++||+||.++.|.+++.. .+++
T Consensus 304 ~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 304 LLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred HHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 99999999999999999999999999999886554431 1356899999999999889888644 4443
No 92
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=3.1e-29 Score=250.69 Aligned_cols=301 Identities=19% Similarity=0.258 Sum_probs=206.4
Q ss_pred HHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHH-HccccCeeEEEEEcCc
Q 015595 61 QRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHACVGGK 139 (404)
Q Consensus 61 ~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~ 139 (404)
.+++..+.+++.++|+|+||||||+.....++.. ..+ ...++++.-|.+--+......+.+ ++...|..+++.....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~-~~~-~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~ 150 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL-GRG-SHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFH 150 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc-CCC-CCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCC
Confidence 4667777777788999999999998654444332 212 223566677887767666666554 3333344443322211
Q ss_pred chHHHHHHHhcCCCeEEeChHHHHHHHHcc-CCCcccceEEecccc-ccccCcHHH-HHHHHhhCCCCceEEEEeeecch
Q 015595 140 SVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDE-MLSRGFKDQ-IYDVYRYLPPDLQVVLISATLPH 216 (404)
Q Consensus 140 ~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~-~~~~~~~~~-~~~~~~~~~~~~~~i~~SAT~~~ 216 (404)
.. ......|.++|++.+++.+... .+..++++||||+|. ..+.++.-. +..++... ++.++|+||||+..
T Consensus 151 ~~------~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld~ 223 (1283)
T TIGR01967 151 DQ------VSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP 223 (1283)
T ss_pred cc------cCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH
Confidence 11 1235789999999999887654 678899999999995 666665543 45554443 57899999999975
Q ss_pred HHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCc-----hhHHHHH----HhhhhcCCCCeEEEEecchhhHHHHH
Q 015595 217 EILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE-----EWKFDTL----CDLYDTLTITQAVIFCNTKRKVDWLT 287 (404)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l----~~~l~~~~~~k~lIf~~~~~~~~~l~ 287 (404)
+ .+...+...| .+.+....+ .+...|...... ..+...+ ..++.. ..+.+|||+++..+++.++
T Consensus 224 ~--~fa~~F~~ap-vI~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~ 296 (1283)
T TIGR01967 224 E--RFSRHFNNAP-IIEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE-GPGDILIFLPGEREIRDAA 296 (1283)
T ss_pred H--HHHHHhcCCC-EEEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHH
Confidence 3 3333333334 344333322 223333332211 1122323 333322 4578999999999999999
Q ss_pred HHHhhCC---CeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCC----------------
Q 015595 288 EKMRGYN---FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP---------------- 348 (404)
Q Consensus 288 ~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p---------------- 348 (404)
+.|.+.+ ..+..+||+++.++|..+++.+ +..+|+|||+++++|+|+|++++||+++.+
T Consensus 297 ~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~ 374 (1283)
T TIGR01967 297 EILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPI 374 (1283)
T ss_pred HHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCC
Confidence 9998764 4688999999999999886653 346899999999999999999999998843
Q ss_pred --CChhhhhhhccccCCCCCceeEEEEeccCcHH
Q 015595 349 --NNRELYIHRIGRSGRFGRKGVAINFVKNDDIK 380 (404)
Q Consensus 349 --~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 380 (404)
.|.++|.||.||+||.+ +|.|+.++++++..
T Consensus 375 ~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 375 EPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred ccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 36689999999999997 99999999976553
No 93
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=3.5e-29 Score=251.33 Aligned_cols=310 Identities=18% Similarity=0.253 Sum_probs=200.0
Q ss_pred CCcHHHHHhhhhhhc-----CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccC
Q 015595 55 KPSAIQQRAVMPIIK-----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~-----~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 129 (404)
.+|+||.+++..+.+ .++.+++++||||||.+++..+...+. .....++||++|+.+|+.|+...+..+.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~-~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLK-AKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHh-cCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 699999999987653 357899999999999886655544433 33345899999999999999999988642221
Q ss_pred eeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHc-------cCCCcccceEEecccccccc--------------
Q 015595 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-------KTLRTRAIKLLDESDEMLSR-------------- 188 (404)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-------~~~~~~~~vIiDE~h~~~~~-------------- 188 (404)
.....+.+...... ........|+|+|.+.+.+.+.. ..+..+++||+||||+....
T Consensus 492 ~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 11111111110000 11123578999999998776432 23567899999999995310
Q ss_pred -CcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCe---------------------EEEecC--CccccCC-
Q 015595 189 -GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPV---------------------KILVKR--DELTLEG- 243 (404)
Q Consensus 189 -~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~---------------------~~~~~~--~~~~~~~- 243 (404)
.+......++.++ +...|++||||...... +++.|+ .+...- .......
T Consensus 570 ~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~ 643 (1123)
T PRK11448 570 LDYVSKYRRVLDYF--DAVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKG 643 (1123)
T ss_pred hhHHHHHHHHHhhc--CccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccccc
Confidence 1234566666665 34689999999654332 222222 111100 0000000
Q ss_pred -----ce----EE-EEEecCc--------------hhH----HHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhC--
Q 015595 244 -----IK----QF-FVAVERE--------------EWK----FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY-- 293 (404)
Q Consensus 244 -----~~----~~-~~~~~~~--------------~~~----~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~-- 293 (404)
+. .. ....+.. ... ...+.+.+....++|+||||.+.++|+.+++.|.+.
T Consensus 644 e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~ 723 (1123)
T PRK11448 644 EEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFK 723 (1123)
T ss_pred chhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 00 00 0000000 000 111222233334579999999999999999887653
Q ss_pred ----C---CeEEEecCCCCHHHHHHHHHHHhcCCC-cEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCC
Q 015595 294 ----N---FTVSSMHGDMPQKERDAIMGEFRSGTT-RVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 365 (404)
Q Consensus 294 ----~---~~~~~~~~~~~~~~r~~~~~~f~~~~~-~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g 365 (404)
+ ..+..++|+.+ ++..++++|+++.. .|+|+++++.+|+|+|.+++|++++++.|...|.|++||+.|..
T Consensus 724 ~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 724 KKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred hhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 1 24566888865 56789999998876 68999999999999999999999999999999999999999974
Q ss_pred C--ceeEEEEec
Q 015595 366 R--KGVAINFVK 375 (404)
Q Consensus 366 ~--~~~~~~~~~ 375 (404)
. ....+++++
T Consensus 802 ~~~~K~~f~I~D 813 (1123)
T PRK11448 802 PEIGKTHFRIFD 813 (1123)
T ss_pred ccCCCceEEEEe
Confidence 3 344555555
No 94
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=3.8e-29 Score=242.11 Aligned_cols=313 Identities=19% Similarity=0.299 Sum_probs=232.5
Q ss_pred HHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHcccc
Q 015595 49 YQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (404)
Q Consensus 49 ~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 128 (404)
...+| .|-++|++++..+.++.+++|+||||+|||+++-.++...+..+.+ ++|++|.++|.+|.++++.......
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qr---viYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQR---VIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCc---eEeccchhhhhhhHHHHHHHHhhhh
Confidence 44677 8999999999999999999999999999999999988888776655 9999999999999999987744332
Q ss_pred CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHHHhhCCCCce
Q 015595 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQ 206 (404)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 206 (404)
.--+.+.+|+.... .+..++|+|.+.|.+++-+. .+..+..|||||+|.+.+..-+..+..++-.+|...+
T Consensus 190 ~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~ 262 (1041)
T COG4581 190 ADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVR 262 (1041)
T ss_pred hhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCc
Confidence 22245666665543 45899999999999998876 4677899999999999999888889999999999999
Q ss_pred EEEEeeecchH--HHHHHHhccCCCeEEEecCCccccCCceEEEEE-------ecCchh----H----------------
Q 015595 207 VVLISATLPHE--ILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA-------VEREEW----K---------------- 257 (404)
Q Consensus 207 ~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~---------------- 257 (404)
+|++|||.++. ...++...-..|..+..... .+..+++++.. ++.... .
T Consensus 263 ~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~--RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~ 340 (1041)
T COG4581 263 FVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEH--RPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVR 340 (1041)
T ss_pred EEEEeCCCCCHHHHHHHHHhccCCCeEEEeecC--CCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhcc
Confidence 99999999764 34444443444444443322 22222222211 111110 0
Q ss_pred --------------------------HHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCC-----------------
Q 015595 258 --------------------------FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN----------------- 294 (404)
Q Consensus 258 --------------------------~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~----------------- 294 (404)
...+...+.....-++++|+-++..|+..+..+....
T Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~ 420 (1041)
T COG4581 341 ETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDH 420 (1041)
T ss_pred ccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHH
Confidence 0111222222233468999999999988777765221
Q ss_pred -----------C-------------eEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccC---
Q 015595 295 -----------F-------------TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL--- 347 (404)
Q Consensus 295 -----------~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~--- 347 (404)
+ .+..+|+++-+.-|..+.+.|..|-++|+++|.+++.|+|+|.-+.|+ .+.
T Consensus 421 ~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K~ 499 (1041)
T COG4581 421 AIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSKF 499 (1041)
T ss_pred HHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEEe
Confidence 1 145889999999999999999999999999999999999999655444 332
Q ss_pred ------CCChhhhhhhccccCCCCCc--eeEEEEec
Q 015595 348 ------PNNRELYIHRIGRSGRFGRK--GVAINFVK 375 (404)
Q Consensus 348 ------p~s~~~~~Q~~GR~~R~g~~--~~~~~~~~ 375 (404)
..+...|.|+.|||||.|.+ |.++++-.
T Consensus 500 dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 500 DGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred cCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 36889999999999999977 66666633
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3e-28 Score=233.09 Aligned_cols=317 Identities=19% Similarity=0.226 Sum_probs=236.3
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|+ .|++.|.-..-.+..| -+..+.||+|||+++.++++.....+.. +-+++|+..|+.|..+++..+...+++
T Consensus 78 lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~G~~---V~IvTpn~yLA~rd~e~~~~l~~~LGl 151 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALTGKG---VHVVTVNDYLAKRDAEWMGPLYEFLGL 151 (830)
T ss_pred hCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHcCCC---EEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 466 7899998776666555 4889999999999999988644444443 779999999999999999999999999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHH-HHHHHccC--------CCcccceEEeccccccccC------------
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT--------LRTRAIKLLDESDEMLSRG------------ 189 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~~--------~~~~~~vIiDE~h~~~~~~------------ 189 (404)
++.++.++.+..++.... .++|+++|+..| .+++.... ...+.+.|+||+|.++-..
T Consensus 152 sv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~ 229 (830)
T PRK12904 152 SVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAE 229 (830)
T ss_pred eEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCC
Confidence 999999988876655554 489999999999 77776553 4567889999999864110
Q ss_pred ----cHHHHHHHHhhCCCC-------------------------------------------------------------
Q 015595 190 ----FKDQIYDVYRYLPPD------------------------------------------------------------- 204 (404)
Q Consensus 190 ----~~~~~~~~~~~~~~~------------------------------------------------------------- 204 (404)
....+..+...+...
T Consensus 230 ~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 309 (830)
T PRK12904 230 DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIV 309 (830)
T ss_pred cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 111222222222100
Q ss_pred --------------------------------------------------------ceEEEEeeecchHHHHHHHhccCC
Q 015595 205 --------------------------------------------------------LQVVLISATLPHEILEMTTKFMTD 228 (404)
Q Consensus 205 --------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~ 228 (404)
.++.+||+|...+..++..-+..+
T Consensus 310 ~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~ 389 (830)
T PRK12904 310 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLD 389 (830)
T ss_pred ECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCC
Confidence 467778888766544444433222
Q ss_pred CeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCH
Q 015595 229 PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 306 (404)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 306 (404)
+...+ ....................|...+.+.+.. ..+.++||||+|++.++.+++.|...++++..+|+. .
T Consensus 390 -vv~IP--tnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q 464 (830)
T PRK12904 390 -VVVIP--TNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--N 464 (830)
T ss_pred -EEEcC--CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--h
Confidence 22221 1111111111112233444578888877755 567799999999999999999999999999999996 6
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccCCCCCCC--------------------------------------CEEEEccCC
Q 015595 307 KERDAIMGEFRSGTTRVLITTDVWARGLDVQQV--------------------------------------SLVINYDLP 348 (404)
Q Consensus 307 ~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~--------------------------------------~~vi~~~~p 348 (404)
..|+..+..|..+...|+|||+++++|+|++-- =+||....+
T Consensus 465 ~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerh 544 (830)
T PRK12904 465 HEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERH 544 (830)
T ss_pred HHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccC
Confidence 788999999999999999999999999999743 167777789
Q ss_pred CChhhhhhhccccCCCCCceeEEEEeccCcHH
Q 015595 349 NNRELYIHRIGRSGRFGRKGVAINFVKNDDIK 380 (404)
Q Consensus 349 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 380 (404)
.|..--.|..||+||.|.+|.+..|++-+|.-
T Consensus 545 esrRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 545 ESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred chHHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 99999999999999999999999999977553
No 96
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.5e-27 Score=227.04 Aligned_cols=318 Identities=18% Similarity=0.220 Sum_probs=224.6
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|. .|++.|.-.--.+.. .-+..++||+|||+++.++++..+..+. .+.+++|++.|+.|.++++..+...+++
T Consensus 79 lg~-~~ydvQliGg~~Lh~--G~Iaem~TGeGKTL~a~Lpa~~~al~G~---~V~VvTpn~yLA~qd~e~m~~l~~~lGL 152 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHE--GNIAEMRTGEGKTLVATLPAYLNAISGR---GVHIVTVNDYLAKRDSQWMKPIYEFLGL 152 (896)
T ss_pred cCC-CcchHHHhhhhhhcc--CccccccCCCCchHHHHHHHHHHHhcCC---CEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 355 677777665444444 4588999999999999999987666554 3999999999999999999999999999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHH-HHHHHcc-CC-------CcccceEEeccccccccC------------
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK-TL-------RTRAIKLLDESDEMLSRG------------ 189 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~-~~-------~~~~~vIiDE~h~~~~~~------------ 189 (404)
++.++.|+.+...+.... .++|+++||+.| .+++... .+ ..+.++|+||+|.++-..
T Consensus 153 tv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~ 230 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAE 230 (896)
T ss_pred eEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCc
Confidence 999999998766554443 589999999999 8888765 22 467899999999864110
Q ss_pred ----cHHHHHHHHhhCCC--------------C-----------------------------------------------
Q 015595 190 ----FKDQIYDVYRYLPP--------------D----------------------------------------------- 204 (404)
Q Consensus 190 ----~~~~~~~~~~~~~~--------------~----------------------------------------------- 204 (404)
....+..+...+.. +
T Consensus 231 ~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~ 310 (896)
T PRK13104 231 DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALK 310 (896)
T ss_pred cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHH
Confidence 11111111111100 0
Q ss_pred ---------------------------------------------------------------------ceEEEEeeecc
Q 015595 205 ---------------------------------------------------------------------LQVVLISATLP 215 (404)
Q Consensus 205 ---------------------------------------------------------------------~~~i~~SAT~~ 215 (404)
.++-+||+|..
T Consensus 311 A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~ 390 (896)
T PRK13104 311 AHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTAD 390 (896)
T ss_pred HHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCCh
Confidence 24444555544
Q ss_pred hHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhh--cCCCCeEEEEecchhhHHHHHHHHhhC
Q 015595 216 HEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD--TLTITQAVIFCNTKRKVDWLTEKMRGY 293 (404)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~k~lIf~~~~~~~~~l~~~l~~~ 293 (404)
.+..++..-+.. .+...+ ....................|...+.+-+. ...+.++||||+|++.++.+++.|+..
T Consensus 391 te~~Ef~~iY~l-~Vv~IP--tnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~ 467 (896)
T PRK13104 391 TEAYEFQQIYNL-EVVVIP--TNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKE 467 (896)
T ss_pred hHHHHHHHHhCC-CEEECC--CCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 433333222211 111111 111111111111122233346665554442 245678999999999999999999999
Q ss_pred CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCC----------------------------------
Q 015595 294 NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV---------------------------------- 339 (404)
Q Consensus 294 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~---------------------------------- 339 (404)
++++..+|+++...++..+.+.|+.|. |+|||+++++|+|+.--
T Consensus 468 gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 545 (896)
T PRK13104 468 NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVI 545 (896)
T ss_pred CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHH
Confidence 999999999999999999999999994 99999999999998621
Q ss_pred ----CEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHH
Q 015595 340 ----SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKI 381 (404)
Q Consensus 340 ----~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 381 (404)
-+||-...+.|..-=.|..||+||.|.+|.+..|++-+|.-+
T Consensus 546 ~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 546 AAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred HcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 167777778888888999999999999999999999776543
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6.1e-28 Score=230.03 Aligned_cols=318 Identities=17% Similarity=0.195 Sum_probs=226.8
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|+ .|++.|.-.--.+..|+ +..+.||+|||+++.++++.....+.. +-+++|+.-|+.|-++++..+...+|+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~---v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKG---VHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCC---eEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 466 79999987766665554 899999999999999998888777766 999999999999999999999999999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHH-HHHHcc--------CCCcccceEEeccccccccC------------
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK--------TLRTRAIKLLDESDEMLSRG------------ 189 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~l~~~--------~~~~~~~vIiDE~h~~~~~~------------ 189 (404)
++.++.++.+..++.... .++|.++|...|- +++... ....+.+.||||+|.++-..
T Consensus 151 ~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~ 228 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAE 228 (796)
T ss_pred eEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCC
Confidence 999998877665544333 5899999986554 222221 23456888999999854110
Q ss_pred ----cHHHHHHHHhhCCC-------------------C------------------------------------------
Q 015595 190 ----FKDQIYDVYRYLPP-------------------D------------------------------------------ 204 (404)
Q Consensus 190 ----~~~~~~~~~~~~~~-------------------~------------------------------------------ 204 (404)
....+..+...+.. .
T Consensus 229 ~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~ 308 (796)
T PRK12906 229 KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRAN 308 (796)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHH
Confidence 11111111110000 0
Q ss_pred -------------------------------------------------------------------ceEEEEeeecchH
Q 015595 205 -------------------------------------------------------------------LQVVLISATLPHE 217 (404)
Q Consensus 205 -------------------------------------------------------------------~~~i~~SAT~~~~ 217 (404)
.++.+||+|...+
T Consensus 309 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e 388 (796)
T PRK12906 309 YIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTE 388 (796)
T ss_pred HHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHH
Confidence 3566677776554
Q ss_pred HHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHhhCCC
Q 015595 218 ILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNF 295 (404)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~~~~~ 295 (404)
..++.+-+.. ++...+ ....................|...+.+.+.. ..+.++||||+|+..++.+++.|.+.++
T Consensus 389 ~~Ef~~iY~l-~vv~IP--tnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi 465 (796)
T PRK12906 389 EEEFREIYNM-EVITIP--TNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGI 465 (796)
T ss_pred HHHHHHHhCC-CEEEcC--CCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 4444332222 222211 1111111111112222334577777777743 3678999999999999999999999999
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCC---CCC-----EEEEccCCCChhhhhhhccccCCCCCc
Q 015595 296 TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ---QVS-----LVINYDLPNNRELYIHRIGRSGRFGRK 367 (404)
Q Consensus 296 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p---~~~-----~vi~~~~p~s~~~~~Q~~GR~~R~g~~ 367 (404)
++..+|+++...++..+.+.++.|. |+|||+++++|.|++ ++. +||.+..|.|...+.|+.||+||.|.+
T Consensus 466 ~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~ 543 (796)
T PRK12906 466 PHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDP 543 (796)
T ss_pred CeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCC
Confidence 9999999987666666666555555 999999999999995 788 999999999999999999999999999
Q ss_pred eeEEEEeccCcHHH
Q 015595 368 GVAINFVKNDDIKI 381 (404)
Q Consensus 368 ~~~~~~~~~~~~~~ 381 (404)
|.+..+++.+|.-+
T Consensus 544 G~s~~~~sleD~l~ 557 (796)
T PRK12906 544 GSSRFYLSLEDDLM 557 (796)
T ss_pred cceEEEEeccchHH
Confidence 99999999875533
No 98
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=2.5e-27 Score=233.73 Aligned_cols=319 Identities=17% Similarity=0.199 Sum_probs=216.4
Q ss_pred CCcHHHHHhhhhhh----cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
+|++||.+++..+. .+.+.|+...+|.|||+.++..+...........++||||| .++..||..++.++.. .+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP-~SlL~nW~~Ei~kw~p--~l 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAP-KSTLGNWMNEIRRFCP--VL 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeC-hHHHHHHHHHHHHHCC--CC
Confidence 68999999998765 46788999999999998876655443332333345999999 5778899999998763 35
Q ss_pred eEEEEEcCcchHHHHHH---HhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceE
Q 015595 131 QAHACVGGKSVGEDIRK---LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQV 207 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 207 (404)
.+..++|.......... .....+|+|+|++.+........-..++++|+||+|.+.+.. ......+..+. ....
T Consensus 246 ~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L~-a~~R 322 (1033)
T PLN03142 246 RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLFS-TNYR 322 (1033)
T ss_pred ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHH--HHHHHHHHHhh-cCcE
Confidence 55666665443222211 123578999999998765443333457899999999987654 23344444444 3456
Q ss_pred EEEeeecchH-HHHHHHh--c--------------------------------------------------cCCCeEEE-
Q 015595 208 VLISATLPHE-ILEMTTK--F--------------------------------------------------MTDPVKIL- 233 (404)
Q Consensus 208 i~~SAT~~~~-~~~~~~~--~--------------------------------------------------~~~~~~~~- 233 (404)
+++||||-.+ +.+++.. + +.......
T Consensus 323 LLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv 402 (1033)
T PLN03142 323 LLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETIL 402 (1033)
T ss_pred EEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEE
Confidence 8899997321 1111000 0 00000000
Q ss_pred -ecCCcc----------------ccCC-------c----e----E-----------EEE---EecCchhHHHHHHhhhhc
Q 015595 234 -VKRDEL----------------TLEG-------I----K----Q-----------FFV---AVEREEWKFDTLCDLYDT 267 (404)
Q Consensus 234 -~~~~~~----------------~~~~-------~----~----~-----------~~~---~~~~~~~~~~~l~~~l~~ 267 (404)
+..... .... + + + .+. .+.....|+..+..++..
T Consensus 403 ~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~ 482 (1033)
T PLN03142 403 KVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPK 482 (1033)
T ss_pred eeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHH
Confidence 000000 0000 0 0 0 000 000112355556666553
Q ss_pred C--CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCC---CcEEEEcCccccCCCCCCCCEE
Q 015595 268 L--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT---TRVLITTDVWARGLDVQQVSLV 342 (404)
Q Consensus 268 ~--~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vlv~t~~~~~Gid~p~~~~v 342 (404)
. .+.++|||+........+.++|...++.+..++|+++..+|..+++.|++.. ..+|++|.+.+.|+|+..+++|
T Consensus 483 Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~V 562 (1033)
T PLN03142 483 LKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIV 562 (1033)
T ss_pred HHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEE
Confidence 3 4679999999999999999999999999999999999999999999997532 3568899999999999999999
Q ss_pred EEccCCCChhhhhhhccccCCCCCcee--EEEEeccCcH
Q 015595 343 INYDLPNNRELYIHRIGRSGRFGRKGV--AINFVKNDDI 379 (404)
Q Consensus 343 i~~~~p~s~~~~~Q~~GR~~R~g~~~~--~~~~~~~~~~ 379 (404)
|+++++|++....|++||+.|.|+... ++.++..+.+
T Consensus 563 IiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 563 ILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred EEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 999999999999999999999998854 5556666543
No 99
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=7.4e-26 Score=216.66 Aligned_cols=146 Identities=17% Similarity=0.281 Sum_probs=124.3
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---cHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEE
Q 015595 36 DAMGIKDDLLRGIY-----QYGFEKP---SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (404)
Q Consensus 36 ~~~~l~~~~~~~l~-----~~~~~~~---~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (404)
+.+.+...+.+.+. ..||..| +|+|.++++.+..+++++..++||+|||++++++++..+..+. .++++
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~IV 141 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHLV 141 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEEE
Confidence 45667777777766 5688877 9999999999999999999999999999999999997776543 38999
Q ss_pred cccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHH-HHHHHccCCC---------cccce
Q 015595 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKTLR---------TRAIK 177 (404)
Q Consensus 108 ~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~~~~---------~~~~v 177 (404)
+|+++|+.|..+++..+...+++++..+.||.+...+.... .++|+|+||++| .++++...+. .+.++
T Consensus 142 TpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~ 219 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFA 219 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEE
Confidence 99999999999999999999999999999998887765544 589999999999 8888876332 34688
Q ss_pred EEecccccc
Q 015595 178 LLDESDEML 186 (404)
Q Consensus 178 IiDE~h~~~ 186 (404)
|+||+|.++
T Consensus 220 IIDEADsmL 228 (970)
T PRK12899 220 IIDEVDSIL 228 (970)
T ss_pred EEechhhhh
Confidence 999999865
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=4.5e-27 Score=221.32 Aligned_cols=325 Identities=18% Similarity=0.258 Sum_probs=231.5
Q ss_pred HHHHHCCCCCCcHHHHHhh--hhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHH
Q 015595 46 RGIYQYGFEKPSAIQQRAV--MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (404)
Q Consensus 46 ~~l~~~~~~~~~~~Q~~~~--~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 123 (404)
-.....|...++.||.+++ +.++++++.+..+||+.|||+++-+.++.......+ .++++.|..+.+.+....+..
T Consensus 214 ~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--~~llilp~vsiv~Ek~~~l~~ 291 (1008)
T KOG0950|consen 214 LYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--NVLLILPYVSIVQEKISALSP 291 (1008)
T ss_pred HHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--ceeEecceeehhHHHHhhhhh
Confidence 3445578889999999986 567788999999999999999999988876655433 599999999999998888888
Q ss_pred HccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHH----HHHHccCCCcccceEEeccccccccCcHHHHHHHHh
Q 015595 124 IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC----DMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYR 199 (404)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~----~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~ 199 (404)
+...+|+.+....|........ ....+.|+|-++-. .+++...++..++||+||.|.+.+.+.+..+..++.
T Consensus 292 ~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~ 367 (1008)
T KOG0950|consen 292 FSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLA 367 (1008)
T ss_pred hccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHH
Confidence 8888888887777665543332 23679999998755 455667899999999999999988876655555443
Q ss_pred hC-----CCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEE---ecCchhHHHHHHhhh------
Q 015595 200 YL-----PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA---VEREEWKFDTLCDLY------ 265 (404)
Q Consensus 200 ~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~l------ 265 (404)
.+ ....|+|+||||+++. .++..++...+... ..+ +..+..+... ..... +...+..+-
T Consensus 368 k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t-~fR---Pv~L~E~ik~G~~i~~~~-r~~~lr~ia~l~~~~ 440 (1008)
T KOG0950|consen 368 KILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTT-RFR---PVPLKEYIKPGSLIYESS-RNKVLREIANLYSSN 440 (1008)
T ss_pred HHHHhccccceeEeeeecccCCh--HHHHHHhhhhheec-ccC---cccchhccCCCcccccch-hhHHHHHhhhhhhhh
Confidence 22 3346799999999873 23333332111111 000 0000000000 00000 111122111
Q ss_pred --------------hcCC-CCeEEEEecchhhHHHHHHHHhhC-------------------------------------
Q 015595 266 --------------DTLT-ITQAVIFCNTKRKVDWLTEKMRGY------------------------------------- 293 (404)
Q Consensus 266 --------------~~~~-~~k~lIf~~~~~~~~~l~~~l~~~------------------------------------- 293 (404)
+..+ +.++||||++++.|+.++..+...
T Consensus 441 ~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~t 520 (1008)
T KOG0950|consen 441 LGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKT 520 (1008)
T ss_pred cccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHhee
Confidence 1111 235999999999998877554321
Q ss_pred -CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEc----cCCCChhhhhhhccccCCCCCc-
Q 015595 294 -NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINY----DLPNNRELYIHRIGRSGRFGRK- 367 (404)
Q Consensus 294 -~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~----~~p~s~~~~~Q~~GR~~R~g~~- 367 (404)
.+.+..+|.+++.+.|+.+...|++|.+.|+++|+++..|+|+|..+.++-. ....+..+|.||+||+||+|-+
T Consensus 521 i~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT 600 (1008)
T KOG0950|consen 521 IPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDT 600 (1008)
T ss_pred ccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccccc
Confidence 1237899999999999999999999999999999999999999988877643 2346788999999999999865
Q ss_pred -eeEEEEeccCcHHHHH
Q 015595 368 -GVAINFVKNDDIKILR 383 (404)
Q Consensus 368 -~~~~~~~~~~~~~~~~ 383 (404)
|.+++++.+.+...+.
T Consensus 601 ~GdsiLI~k~~e~~~~~ 617 (1008)
T KOG0950|consen 601 LGDSILIIKSSEKKRVR 617 (1008)
T ss_pred CcceEEEeeccchhHHH
Confidence 9999999999876555
No 101
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.95 E-value=1.3e-26 Score=227.03 Aligned_cols=319 Identities=17% Similarity=0.207 Sum_probs=212.4
Q ss_pred CCcHHHHHhhhhhhcC---C-cEEEEcCCCCchhhHhHHHHHhhhhc-CCCceeEEEEcccHHHHHHHHHHHHHHccccC
Q 015595 55 KPSAIQQRAVMPIIKG---R-DVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIGDFIN 129 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~---~-~~iv~a~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 129 (404)
..+++|..++..+.+. . .+++.||||+|||.+++.++...+.. .....+++++.|++++.+++++.++.+....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 4599999999887763 4 67899999999999999988877766 34567899999999999999999998765544
Q ss_pred eeEEEEEcCcchHHHHHH-H-------------hcCCCeEEeChHHHHHHHHc-cCC-----CcccceEEeccccccccC
Q 015595 130 IQAHACVGGKSVGEDIRK-L-------------EHGVHVVSGTPGRVCDMIKR-KTL-----RTRAIKLLDESDEMLSRG 189 (404)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~-~-------------~~~~~iiv~T~~~l~~~l~~-~~~-----~~~~~vIiDE~h~~~~~~ 189 (404)
......++.......... . .....+.++|+......... ..+ -..+++||||+|.+....
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 333312322221110000 0 00123444444444432111 111 134688999999887773
Q ss_pred cHHHHHHHHhhC-CCCceEEEEeeecchHHHHHHHhccCCCeEEEecCC---ccccCCceEE-EEEecCchhHHHHHHhh
Q 015595 190 FKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD---ELTLEGIKQF-FVAVEREEWKFDTLCDL 264 (404)
Q Consensus 190 ~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 264 (404)
....+..+...+ ..+..+|+||||+|+.+...+.........+..... ......+... ........ ........
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~ 433 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGP-QEELIELI 433 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhh-hHhhhhcc
Confidence 333333333332 347789999999999999988887776555444321 0011111110 01111110 01112222
Q ss_pred h-hcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHH----hcCCCcEEEEcCccccCCCCCCC
Q 015595 265 Y-DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEF----RSGTTRVLITTDVWARGLDVQQV 339 (404)
Q Consensus 265 l-~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f----~~~~~~vlv~t~~~~~Gid~p~~ 339 (404)
. ....+++++|.||++..|.++++.|+..+..+..+|+.+...+|.+.++.+ +.++..|+|||++++.|+|+ +.
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-df 512 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DF 512 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-cc
Confidence 2 223467899999999999999999999887899999999999999888754 45788999999999999999 35
Q ss_pred CEEEEccCCCChhhhhhhccccCCCC--CceeEEEEeccC
Q 015595 340 SLVINYDLPNNRELYIHRIGRSGRFG--RKGVAINFVKND 377 (404)
Q Consensus 340 ~~vi~~~~p~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~ 377 (404)
+++| .-+.+.++.+||+||++|.| ..|..+++....
T Consensus 513 d~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 513 DVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred Ceee--ecCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 5554 45777999999999999999 557777766654
No 102
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=6.8e-26 Score=218.27 Aligned_cols=310 Identities=16% Similarity=0.247 Sum_probs=222.8
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHH-HccccCeeEE
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAH 133 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~-~~~~~~~~~~ 133 (404)
.-+....+++..+..+.-++|.|+||||||+..-..+++... ..+..+.++=|.+--+....+.+.+ ++...|-.++
T Consensus 50 Pv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 50 PVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 346666778888888889999999999999887776666554 2234577788988666776666655 4444454444
Q ss_pred EEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHc-cCCCcccceEEecccccc-ccC-cHHHHHHHHhhCCCCceEEEE
Q 015595 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLDESDEML-SRG-FKDQIYDVYRYLPPDLQVVLI 210 (404)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~vIiDE~h~~~-~~~-~~~~~~~~~~~~~~~~~~i~~ 210 (404)
+..-..+. ......|-++|.+.|.+.+.. ..++.+++||+||+|+=. +.+ ....+..+....+.+.++|.|
T Consensus 128 Y~iRfe~~------~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 128 YSIRFESK------VSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred EEEEeecc------CCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 43221111 123477889999999998885 478999999999999832 222 234455667777778999999
Q ss_pred eeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCch----hHHHHHHhhhhcCCCCeEEEEecchhhHHHH
Q 015595 211 SATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE----WKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 286 (404)
Q Consensus 211 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l 286 (404)
|||+..+ .+..++++.-.+.+....+. +..+|......+ ..+............+.+|||.+...+.+..
T Consensus 202 SATld~~---rfs~~f~~apvi~i~GR~fP---Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~ 275 (845)
T COG1643 202 SATLDAE---RFSAYFGNAPVIEIEGRTYP---VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERT 275 (845)
T ss_pred ecccCHH---HHHHHcCCCCEEEecCCccc---eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHH
Confidence 9999764 33455665444444444332 233332222121 1222233333344578899999999999999
Q ss_pred HHHHhh----CCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccC---------------
Q 015595 287 TEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL--------------- 347 (404)
Q Consensus 287 ~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~--------------- 347 (404)
++.|.+ ....+..+||.++.+++..+++--..|..+|++||.++++++.+|+++.||.-+.
T Consensus 276 ~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L 355 (845)
T COG1643 276 AEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRL 355 (845)
T ss_pred HHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceee
Confidence 999987 3478999999999999999888877777789999999999999999999997664
Q ss_pred ---CCChhhhhhhccccCCCCCceeEEEEeccCcH
Q 015595 348 ---PNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 379 (404)
Q Consensus 348 ---p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 379 (404)
|-|-++..||.||+||.+ +|.||-++++++.
T Consensus 356 ~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~ 389 (845)
T COG1643 356 ETEPISKASADQRAGRAGRTG-PGICYRLYSEEDF 389 (845)
T ss_pred eEEEechhhhhhhccccccCC-CceEEEecCHHHH
Confidence 357788999999999995 8999999998543
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=4.1e-25 Score=211.32 Aligned_cols=317 Identities=16% Similarity=0.186 Sum_probs=222.3
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|+ .|++.|.-.--.+. +.-+..++||.|||+++.++++..+..+.. +.|++|+..|+.+-.+++..+...+|+
T Consensus 79 lgm-~~ydVQliGgl~L~--~G~IaEm~TGEGKTL~a~lp~~l~al~g~~---VhIvT~ndyLA~RD~e~m~~l~~~lGl 152 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLD--SNRIAEMRTGEGKTLTATLPAYLNALTGKG---VHVITVNDYLARRDAENNRPLFEFLGL 152 (908)
T ss_pred hCC-CcCchHHhcchHhc--CCccccccCCCCchHHHHHHHHHHHhcCCC---EEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 455 67888865544443 446889999999999999999877766655 999999999999999999999999999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHH-HHHHHcc-C-------CCcccceEEeccccccccC------------
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK-T-------LRTRAIKLLDESDEMLSRG------------ 189 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~-~-------~~~~~~vIiDE~h~~~~~~------------ 189 (404)
++.++.++.+..... ..-.++|+++|+..| ++++..+ . ...+.+.|+||+|.++-..
T Consensus 153 sv~~i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~ 230 (908)
T PRK13107 153 TVGINVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAE 230 (908)
T ss_pred eEEEecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCc
Confidence 999998887753332 223689999999998 7777665 2 2556788999999864221
Q ss_pred ----cHHH----HHHHHhh-------------C--CCC------------------------------------------
Q 015595 190 ----FKDQ----IYDVYRY-------------L--PPD------------------------------------------ 204 (404)
Q Consensus 190 ----~~~~----~~~~~~~-------------~--~~~------------------------------------------ 204 (404)
.... +..+... + ..+
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i 310 (908)
T PRK13107 231 DSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHV 310 (908)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHH
Confidence 0011 1111100 0 000
Q ss_pred --------------------------------------------------------------------------ceEEEE
Q 015595 205 --------------------------------------------------------------------------LQVVLI 210 (404)
Q Consensus 205 --------------------------------------------------------------------------~~~i~~ 210 (404)
.++-+|
T Consensus 311 ~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GM 390 (908)
T PRK13107 311 NAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGM 390 (908)
T ss_pred HHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcc
Confidence 244555
Q ss_pred eeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhh--cCCCCeEEEEecchhhHHHHHH
Q 015595 211 SATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD--TLTITQAVIFCNTKRKVDWLTE 288 (404)
Q Consensus 211 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~k~lIf~~~~~~~~~l~~ 288 (404)
|+|...+..++.+-+-. .+...+.... ................|...+.+-+. ...+.++||||.|++.++.++.
T Consensus 391 TGTa~te~~Ef~~iY~l-~Vv~IPTnkp--~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~ 467 (908)
T PRK13107 391 TGTADTEAFEFQHIYGL-DTVVVPTNRP--MVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLAR 467 (908)
T ss_pred cCCChHHHHHHHHHhCC-CEEECCCCCC--ccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHH
Confidence 55554443333322221 1111111111 11111111112223335555544333 2356789999999999999999
Q ss_pred HHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCC-----------------------------
Q 015595 289 KMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV----------------------------- 339 (404)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~----------------------------- 339 (404)
.|...++.+..+|++.+..++..+.+.|+.|. |+|||+++++|.|+.--
T Consensus 468 ~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (908)
T PRK13107 468 LMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRH 545 (908)
T ss_pred HHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999888 99999999999998621
Q ss_pred --------CEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHH
Q 015595 340 --------SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIK 380 (404)
Q Consensus 340 --------~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 380 (404)
-+||-...+.|..-=.|..||+||.|.+|.+..|++-+|.-
T Consensus 546 ~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L 594 (908)
T PRK13107 546 DEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSL 594 (908)
T ss_pred HHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHH
Confidence 16777778889888999999999999999999999977653
No 104
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=9.6e-26 Score=184.06 Aligned_cols=162 Identities=26% Similarity=0.459 Sum_probs=137.3
Q ss_pred cHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEE
Q 015595 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACV 136 (404)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~ 136 (404)
+|+|.++++.+.+++++++.+|||+|||+++..+++..+..+ +..++++++|+++|++|..+.+.+++...+.++..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999888776 4457999999999999999999999888788888888
Q ss_pred cCcchH-HHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHHHhhCC--CCceEEEEe
Q 015595 137 GGKSVG-EDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLP--PDLQVVLIS 211 (404)
Q Consensus 137 ~~~~~~-~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~~S 211 (404)
++.... .....+..+++|+|+||++|.+.+... .+...+++|+||+|.+....+...+..+.+.+. ++.++++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 887754 333444567999999999999999863 455589999999999988877777888877763 358999999
Q ss_pred eecchHHH
Q 015595 212 ATLPHEIL 219 (404)
Q Consensus 212 AT~~~~~~ 219 (404)
||++..+.
T Consensus 160 AT~~~~~~ 167 (169)
T PF00270_consen 160 ATLPSNVE 167 (169)
T ss_dssp SSSTHHHH
T ss_pred eCCChhHh
Confidence 99985543
No 105
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.1e-24 Score=206.57 Aligned_cols=279 Identities=19% Similarity=0.295 Sum_probs=195.9
Q ss_pred CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccC-e
Q 015595 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN-I 130 (404)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~-~ 130 (404)
|+ .||..|+-....+..|+++-+.||||.|||+..++..+....++ .++++++||..|+.|..+.++++....+ .
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcC---CeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 55 89999999999999999999999999999976665554444443 4699999999999999999999876655 4
Q ss_pred eEEE-EEcCcchHHH---HHHHh-cCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccC-----------cHH--
Q 015595 131 QAHA-CVGGKSVGED---IRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRG-----------FKD-- 192 (404)
Q Consensus 131 ~~~~-~~~~~~~~~~---~~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~-----------~~~-- 192 (404)
.+.. .++..+..+. ...+. .+.+|+|+|.+.+...+....-..++++++|++|.++..+ +..
T Consensus 156 ~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~ 235 (1187)
T COG1110 156 DVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEV 235 (1187)
T ss_pred ceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHH
Confidence 4433 4444333322 22333 3689999999888877776544578999999999865432 000
Q ss_pred -----HHHHHHhh------------------------CCCCceEEEEeeecchHH-H-HHHHhccCCCeEEEecCCcccc
Q 015595 193 -----QIYDVYRY------------------------LPPDLQVVLISATLPHEI-L-EMTTKFMTDPVKILVKRDELTL 241 (404)
Q Consensus 193 -----~~~~~~~~------------------------~~~~~~~i~~SAT~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 241 (404)
.+..+... -.+..++++.|||..+.- + .+....++ ..+.......
T Consensus 236 i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----FevG~~~~~L 311 (1187)
T COG1110 236 IESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEVGSGGEGL 311 (1187)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----CccCccchhh
Confidence 00111000 113468999999986532 1 22222222 2222222333
Q ss_pred CCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecc---hhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhc
Q 015595 242 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT---KRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS 318 (404)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 318 (404)
.++...|... .....+.++++.... -.|||++. .+.+++++++|++.|+++..+|+. +.+.++.|..
T Consensus 312 RNIvD~y~~~----~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~ 381 (1187)
T COG1110 312 RNIVDIYVES----ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE 381 (1187)
T ss_pred hheeeeeccC----ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc
Confidence 4444444433 355666667766544 58999999 999999999999999999999985 2778999999
Q ss_pred CCCcEEEEc----CccccCCCCC-CCCEEEEccCC
Q 015595 319 GTTRVLITT----DVWARGLDVQ-QVSLVINYDLP 348 (404)
Q Consensus 319 ~~~~vlv~t----~~~~~Gid~p-~~~~vi~~~~p 348 (404)
|++++||++ ..+.+|+|+| .++.+|+++.|
T Consensus 382 GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 382 GEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred CceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 999999877 5678999999 57788888865
No 106
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=4.1e-25 Score=201.40 Aligned_cols=307 Identities=16% Similarity=0.265 Sum_probs=218.9
Q ss_pred CcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHH-HccccCeeEEE
Q 015595 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHA 134 (404)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~-~~~~~~~~~~~ 134 (404)
-+.+-.+++..+.+++-++|.|+||||||+...-.+.+.-..... ++-+.=|++--+.....+... .+..+|..++.
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g--~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSG--KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCC--cEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 355556788888888889999999999998866655554433332 377777888666666555543 44445554443
Q ss_pred EE--cCcchHHHHHHHhcCCCeEEeChHHHHHHHH-ccCCCcccceEEeccccc--cccCcHHHHHHHHhhCCCCceEEE
Q 015595 135 CV--GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK-RKTLRTRAIKLLDESDEM--LSRGFKDQIYDVYRYLPPDLQVVL 209 (404)
Q Consensus 135 ~~--~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~-~~~~~~~~~vIiDE~h~~--~~~~~~~~~~~~~~~~~~~~~~i~ 209 (404)
.. .+... ....|.++|-+.|++.+. ...+..+++||+||||+= ..+-....++.+.+. +++.++|+
T Consensus 130 ~IRFed~ts--------~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklIi 200 (674)
T KOG0922|consen 130 TIRFEDSTS--------KDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLII 200 (674)
T ss_pred EEEecccCC--------CceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEEE
Confidence 32 12111 237799999999887554 457899999999999972 222233344444444 35789999
Q ss_pred EeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCch---hHHHHHHhhhhcCCCCeEEEEecchhhHHHH
Q 015595 210 ISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE---WKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 286 (404)
Q Consensus 210 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l 286 (404)
||||+.. +..+.++.....+.+..+.+. ++..|..-+..+ .....+.++....+++.+|||....++.+..
T Consensus 201 mSATlda---~kfS~yF~~a~i~~i~GR~fP---Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~ 274 (674)
T KOG0922|consen 201 MSATLDA---EKFSEYFNNAPILTIPGRTFP---VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAA 274 (674)
T ss_pred EeeeecH---HHHHHHhcCCceEeecCCCCc---eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Confidence 9999975 344566666444554444432 233333323222 2344455566667888999999999999999
Q ss_pred HHHHhhC----CC----eEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccC-----------
Q 015595 287 TEKMRGY----NF----TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL----------- 347 (404)
Q Consensus 287 ~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~----------- 347 (404)
++.|.+. .. .+..+||.++.+++..+++.-..|..+|+++|.+++..+.+|++..||.-+.
T Consensus 275 ~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g 354 (674)
T KOG0922|consen 275 CELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTG 354 (674)
T ss_pred HHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccC
Confidence 9998775 11 2468999999999999998888899999999999999999999999997653
Q ss_pred -------CCChhhhhhhccccCCCCCceeEEEEeccCcHH
Q 015595 348 -------PNNRELYIHRIGRSGRFGRKGVAINFVKNDDIK 380 (404)
Q Consensus 348 -------p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 380 (404)
|-|-++..||.|||||.| +|.|+-+|++++..
T Consensus 355 ~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 355 LDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD 393 (674)
T ss_pred ccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh
Confidence 458888999999999996 89999999987653
No 107
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.93 E-value=1.2e-24 Score=203.00 Aligned_cols=308 Identities=17% Similarity=0.194 Sum_probs=201.5
Q ss_pred CCCcHHHHHhhhhhhc----C-CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHcccc
Q 015595 54 EKPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~~----~-~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 128 (404)
..+|+||..++..+.+ | +.++++++||+|||.+++..+...+ +.....++|+|+.+++|+.|....+..+....
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~-r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLI-KSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHH-hcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 3799999999877554 3 4589999999999988776544444 44445679999999999999999988876332
Q ss_pred CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc-------CCCcccceEEeccccccccCcHHHHHHHHhhC
Q 015595 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-------TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYL 201 (404)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-------~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~ 201 (404)
-.+..+.+.... ..+.|.++|.+.+....... ....+++||+||||+-....+. .++.++
T Consensus 243 -~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~----~I~dYF 309 (875)
T COG4096 243 -TKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWS----SILDYF 309 (875)
T ss_pred -cceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhH----HHHHHH
Confidence 222232221111 14789999999999877654 2345899999999985444333 455544
Q ss_pred CCCceEEEEeeecchHHHHHHHhcc-CCCeEEEecCC-----ccccCCceE---------------------EEEEe---
Q 015595 202 PPDLQVVLISATLPHEILEMTTKFM-TDPVKILVKRD-----ELTLEGIKQ---------------------FFVAV--- 251 (404)
Q Consensus 202 ~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~---------------------~~~~~--- 251 (404)
. ...+++||||..........++ +.|...+...+ ...++.+.. ....+
T Consensus 310 d--A~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~d 387 (875)
T COG4096 310 D--AATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDED 387 (875)
T ss_pred H--HHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcc
Confidence 2 2245669998765444444444 44433321110 000000000 00000
Q ss_pred -------c---------CchhHHHHHHhhhhcCC----CCeEEEEecchhhHHHHHHHHhhC-----CCeEEEecCCCCH
Q 015595 252 -------E---------REEWKFDTLCDLYDTLT----ITQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQ 306 (404)
Q Consensus 252 -------~---------~~~~~~~~l~~~l~~~~----~~k~lIf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~ 306 (404)
+ ....-...+.+.+.... .+|+||||.+..||+.+.+.|... +--+..+.|+..
T Consensus 388 d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~- 466 (875)
T COG4096 388 DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE- 466 (875)
T ss_pred cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch-
Confidence 0 00112334444454421 368999999999999999999765 234666676633
Q ss_pred HHHHHHHHHHhc--CCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCC-------CCceeEEEEeccC
Q 015595 307 KERDAIMGEFRS--GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF-------GRKGVAINFVKND 377 (404)
Q Consensus 307 ~~r~~~~~~f~~--~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~-------g~~~~~~~~~~~~ 377 (404)
.-+..+..|.. .-.+|.|+.+++.+|+|.|.|..+++.....|...|.||+||+-|. +++...+.+++-.
T Consensus 467 -~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 467 -QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred -hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 23444555543 3457888999999999999999999999999999999999999996 2345667777654
Q ss_pred cH
Q 015595 378 DI 379 (404)
Q Consensus 378 ~~ 379 (404)
+.
T Consensus 546 ~~ 547 (875)
T COG4096 546 DN 547 (875)
T ss_pred hh
Confidence 43
No 108
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.93 E-value=9.7e-24 Score=204.86 Aligned_cols=297 Identities=15% Similarity=0.160 Sum_probs=181.5
Q ss_pred CCcHHHHHhhhhhhc----------CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIK----------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~----------~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
-++++|.+++..+.+ .+..++..+||||||++++..+...+ .....+++||++|+.+|..|+.+.+..+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 489999999887543 24689999999999988877665544 3344568999999999999999999987
Q ss_pred ccccCeeEEEEEcCcchHHHHHHHh-cCCCeEEeChHHHHHHHHcc----CCCcc-cceEEeccccccccCcHHHHHHHH
Q 015595 125 GDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK----TLRTR-AIKLLDESDEMLSRGFKDQIYDVY 198 (404)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~l~~~----~~~~~-~~vIiDE~h~~~~~~~~~~~~~~~ 198 (404)
+... + ....+.......+. ....|+|+|.++|...+... ..... .++|+||||+.....+...+.
T Consensus 317 ~~~~---~---~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~--- 387 (667)
T TIGR00348 317 QKDC---A---ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLK--- 387 (667)
T ss_pred CCCC---C---cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHH---
Confidence 5310 0 01111111222222 34689999999998644321 11122 378899999865443332232
Q ss_pred hhCCCCceEEEEeeecchH----HHHHHHhccCCCeEEEecCCccccCCceE--EEEE------ecCc------------
Q 015595 199 RYLPPDLQVVLISATLPHE----ILEMTTKFMTDPVKILVKRDELTLEGIKQ--FFVA------VERE------------ 254 (404)
Q Consensus 199 ~~~~~~~~~i~~SAT~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~------------ 254 (404)
+.++ +...+++||||... ........++++...+.. ..+...+... .|.. ++..
T Consensus 388 ~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~-~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~ 465 (667)
T TIGR00348 388 KALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFI-TDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFEL 465 (667)
T ss_pred hhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeH-HHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHh
Confidence 3444 56799999999532 111111111222222111 1111111100 0000 0000
Q ss_pred ------hh--------------------HHHHH-Hhhh----hc--CCCCeEEEEecchhhHHHHHHHHhhC-----CCe
Q 015595 255 ------EW--------------------KFDTL-CDLY----DT--LTITQAVIFCNTKRKVDWLTEKMRGY-----NFT 296 (404)
Q Consensus 255 ------~~--------------------~~~~l-~~~l----~~--~~~~k~lIf~~~~~~~~~l~~~l~~~-----~~~ 296 (404)
.. ....+ ..++ +. ..++|++|||.++.+|..+++.|.+. +..
T Consensus 466 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~ 545 (667)
T TIGR00348 466 LPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEAS 545 (667)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCe
Confidence 00 00000 0111 11 12478999999999999999998664 234
Q ss_pred EEEecCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhh
Q 015595 297 VSSMHGDMPQK---------------------ERDAIMGEFRS-GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELY 354 (404)
Q Consensus 297 ~~~~~~~~~~~---------------------~r~~~~~~f~~-~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~ 354 (404)
...+++..+.. ....++++|++ +..++||+++++.+|+|.|.++++++..+..+. .+
T Consensus 546 ~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h-~L 624 (667)
T TIGR00348 546 AIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH-GL 624 (667)
T ss_pred eEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-HH
Confidence 45555543322 12367888875 678999999999999999999999988876664 58
Q ss_pred hhhccccCCC
Q 015595 355 IHRIGRSGRF 364 (404)
Q Consensus 355 ~Q~~GR~~R~ 364 (404)
+|++||++|.
T Consensus 625 lQai~R~nR~ 634 (667)
T TIGR00348 625 LQAIARTNRI 634 (667)
T ss_pred HHHHHHhccc
Confidence 9999999994
No 109
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.9e-23 Score=193.03 Aligned_cols=333 Identities=17% Similarity=0.162 Sum_probs=227.7
Q ss_pred CCcHHHHHhhhhhhc----CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|.+||++.++.+++ +..-|+...+|-|||...+..+......+.-..++||||| .++..||..++..+... .
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP-~Tii~qW~~E~~~w~p~--~ 281 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCP-ATIIHQWMKEFQTWWPP--F 281 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEcc-HHHHHHHHHHHHHhCcc--e
Confidence 579999999998876 4567999999999997655444433333222345999999 67899999999987644 5
Q ss_pred eEEEEEcCcch--------HHHHH-----HHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHH
Q 015595 131 QAHACVGGKSV--------GEDIR-----KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDV 197 (404)
Q Consensus 131 ~~~~~~~~~~~--------~~~~~-----~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 197 (404)
.+..+++.... ..... ....+..|+++|++.|.-.-..-.-..++++|+||.|.+-+.. ..+...
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpn--s~isla 359 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPN--SKISLA 359 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCc--cHHHHH
Confidence 66666654331 11111 1223467999999888644222234467999999999998876 233333
Q ss_pred HhhCCCCceEEEEeeecch-HHHHHHHhc---------------------------------------------------
Q 015595 198 YRYLPPDLQVVLISATLPH-EILEMTTKF--------------------------------------------------- 225 (404)
Q Consensus 198 ~~~~~~~~~~i~~SAT~~~-~~~~~~~~~--------------------------------------------------- 225 (404)
...++ ..+.|++|+||-. .+.+++.-+
T Consensus 360 ckki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~P 438 (923)
T KOG0387|consen 360 CKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISP 438 (923)
T ss_pred HHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 33333 5567888999632 122211100
Q ss_pred --------------cCCC--eEEEecCC----------------------cc--------------ccCCceE-------
Q 015595 226 --------------MTDP--VKILVKRD----------------------EL--------------TLEGIKQ------- 246 (404)
Q Consensus 226 --------------~~~~--~~~~~~~~----------------------~~--------------~~~~~~~------- 246 (404)
+... ..+.+.-. .. .+..+..
T Consensus 439 ylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~ 518 (923)
T KOG0387|consen 439 YLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQ 518 (923)
T ss_pred HHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccccc
Confidence 0000 00000000 00 0000000
Q ss_pred --EEEEecCchhHHHHHHhhhhcC--CCCeEEEEecchhhHHHHHHHHh-hCCCeEEEecCCCCHHHHHHHHHHHhcCCC
Q 015595 247 --FFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMR-GYNFTVSSMHGDMPQKERDAIMGEFRSGTT 321 (404)
Q Consensus 247 --~~~~~~~~~~~~~~l~~~l~~~--~~~k~lIf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 321 (404)
.+...+....|+..+..+++.+ .+.++++|..++.....+...|. ..++.+..+.|.++...|..++++|++++.
T Consensus 519 ~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s 598 (923)
T KOG0387|consen 519 GPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDES 598 (923)
T ss_pred CCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCc
Confidence 0001112234677777777654 45699999999999999999998 579999999999999999999999997764
Q ss_pred --cEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCc--eeEEEEeccCcHHHHHHHHHHHcccc
Q 015595 322 --RVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK--GVAINFVKNDDIKILRDIEQYYSTQI 393 (404)
Q Consensus 322 --~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (404)
.+|++|.+.+-|+|+..++.||+||+.|++++=.|..-|+.|.||+ -.+|.+++.......-+.++.+++.+
T Consensus 599 ~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~L 674 (923)
T KOG0387|consen 599 IFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFL 674 (923)
T ss_pred eEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999987 46677888888887777777777644
No 110
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.92 E-value=5.9e-23 Score=189.00 Aligned_cols=320 Identities=16% Similarity=0.188 Sum_probs=218.1
Q ss_pred CCcHHHHHhhhhhhc----CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.+++||.+.++.+.. |-+.|+...+|-|||+..+..+.+...........||+||... ..+|..+++++. .++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~St-L~NW~~Ef~rf~--P~l 243 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKST-LDNWMNEFKRFT--PSL 243 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhh-HHHHHHHHHHhC--CCc
Confidence 699999999887653 5678999999999998766555444432332334899999665 556788888876 446
Q ss_pred eEEEEEcCcchHHHHHH-H--hcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceE
Q 015595 131 QAHACVGGKSVGEDIRK-L--EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQV 207 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~-~--~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 207 (404)
.+..++|+......... + ....+|+|+|++...+--.-..-.++.++||||+|++.+.. ..+..+++.+. ....
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~-~~nr 320 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILREFK-TDNR 320 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchh--hHHHHHHHHhc-ccce
Confidence 77778887654333221 1 23689999999988764332233467899999999998876 34445555554 3346
Q ss_pred EEEeeecch-HHHHHHH------------------hc----------------------------------cCCC--eEE
Q 015595 208 VLISATLPH-EILEMTT------------------KF----------------------------------MTDP--VKI 232 (404)
Q Consensus 208 i~~SAT~~~-~~~~~~~------------------~~----------------------------------~~~~--~~~ 232 (404)
+++|+||-. ++.+++. ++ +... ..+
T Consensus 321 LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~i 400 (971)
T KOG0385|consen 321 LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELII 400 (971)
T ss_pred eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeE
Confidence 788999621 1111110 00 0000 000
Q ss_pred EecCCcc-------------------------ccCCc--------eEEE--------------EEecCchhHHHHHHhhh
Q 015595 233 LVKRDEL-------------------------TLEGI--------KQFF--------------VAVEREEWKFDTLCDLY 265 (404)
Q Consensus 233 ~~~~~~~-------------------------~~~~~--------~~~~--------------~~~~~~~~~~~~l~~~l 265 (404)
.+..... ...++ .+-| ..+-....|+..|..++
T Consensus 401 yvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL 480 (971)
T KOG0385|consen 401 YVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLL 480 (971)
T ss_pred eccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHH
Confidence 0000000 00000 0000 00111123555566655
Q ss_pred hc--CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCC---CcEEEEcCccccCCCCCCCC
Q 015595 266 DT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT---TRVLITTDVWARGLDVQQVS 340 (404)
Q Consensus 266 ~~--~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vlv~t~~~~~Gid~p~~~ 340 (404)
.. ..+.+||||..-....+-+.+++.-+++....+.|.++.++|...++.|+... .-+|++|.+.+-|||+..++
T Consensus 481 ~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aAD 560 (971)
T KOG0385|consen 481 PKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAAD 560 (971)
T ss_pred HHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccccccc
Confidence 53 25789999999999999999999889999999999999999999999998654 34678999999999999999
Q ss_pred EEEEccCCCChhhhhhhccccCCCCCce--eEEEEeccCcHH
Q 015595 341 LVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKNDDIK 380 (404)
Q Consensus 341 ~vi~~~~p~s~~~~~Q~~GR~~R~g~~~--~~~~~~~~~~~~ 380 (404)
+||+||..|++..=+|...|+.|.||.. .++.++++..+.
T Consensus 561 tVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 561 TVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred EEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 9999999999999999999999999874 566677776543
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.6e-22 Score=192.35 Aligned_cols=307 Identities=21% Similarity=0.265 Sum_probs=207.4
Q ss_pred CCcHHHHHhhhhhhcC----CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 55 KPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~----~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.+++-|+.++..+.+. ...++.+.||||||.+|+-.+...+.+++. +|+++|-.+|..|+...++..+ +.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gkq---vLvLVPEI~Ltpq~~~rf~~rF---g~ 271 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQ---VLVLVPEIALTPQLLARFKARF---GA 271 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCE---EEEEeccccchHHHHHHHHHHh---CC
Confidence 6889999999998776 568999999999999999999999888755 9999999999999999998744 46
Q ss_pred eEEEEEcCcchHHHH---HHHh-cCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccC------cHHHHHHHHhh
Q 015595 131 QAHACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRG------FKDQIYDVYRY 200 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~------~~~~~~~~~~~ 200 (404)
.+..++++.+..++. .... ....|+|+|...+. ..+.++++||+||-|.....+ ..+.+.-+...
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-----~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~ 346 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-----LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK 346 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-----CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHH
Confidence 777788776655443 3333 46899999975554 568888999999999864332 22233322222
Q ss_pred CCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccc---cCCceEEEEEec---C----chhHHHHHHhhhhcCCC
Q 015595 201 LPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELT---LEGIKQFFVAVE---R----EEWKFDTLCDLYDTLTI 270 (404)
Q Consensus 201 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~----~~~~~~~l~~~l~~~~~ 270 (404)
..++++|+-||||+-+........ .+.......... ++.+.-...... . ...-++.+..-++. +
T Consensus 347 -~~~~pvvLgSATPSLES~~~~~~g---~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~--g 420 (730)
T COG1198 347 -KENAPVVLGSATPSLESYANAESG---KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLER--G 420 (730)
T ss_pred -HhCCCEEEecCCCCHHHHHhhhcC---ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhc--C
Confidence 357789999999987655544322 122222111111 222211111110 1 01122333333332 4
Q ss_pred CeEEEEecchhh------------------------------------------------------------HHHHHHHH
Q 015595 271 TQAVIFCNTKRK------------------------------------------------------------VDWLTEKM 290 (404)
Q Consensus 271 ~k~lIf~~~~~~------------------------------------------------------------~~~l~~~l 290 (404)
.++|+|.|.+-. ++++++.|
T Consensus 421 eQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL 500 (730)
T COG1198 421 EQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEEL 500 (730)
T ss_pred CeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHH
Confidence 456666664321 24566666
Q ss_pred hhC--CCeEEEecCCCCHHH--HHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCC------------CChhhh
Q 015595 291 RGY--NFTVSSMHGDMPQKE--RDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP------------NNRELY 354 (404)
Q Consensus 291 ~~~--~~~~~~~~~~~~~~~--r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p------------~s~~~~ 354 (404)
++. +..+..+.++..... -+..+..|.+|+.+|||+|+++..|.|+|+++.|...+.. .....+
T Consensus 501 ~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll 580 (730)
T COG1198 501 KRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLL 580 (730)
T ss_pred HHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHH
Confidence 554 456777777765543 4677999999999999999999999999999987766543 123457
Q ss_pred hhhccccCCCCCceeEEEEeccCc
Q 015595 355 IHRIGRSGRFGRKGVAINFVKNDD 378 (404)
Q Consensus 355 ~Q~~GR~~R~g~~~~~~~~~~~~~ 378 (404)
.|..||+||.+.+|.+++-...-+
T Consensus 581 ~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 581 MQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HHHHhhhccCCCCCeEEEEeCCCC
Confidence 899999999988888877655443
No 112
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.91 E-value=1.8e-21 Score=184.09 Aligned_cols=327 Identities=17% Similarity=0.149 Sum_probs=215.4
Q ss_pred CCcHHHHHhhhhhhcC----------CcEEEEcCCCCchhhHhHHHHHhhhhcCCCc-----eeEEEEcccHHHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIKG----------RDVIAQAQSGTGKTSMIALTVCQTVDTSSRE-----VQALILSPTRELATQTEK 119 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~----------~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~-----~~~lil~p~~~L~~q~~~ 119 (404)
.++|||++.+..+.+. ...|+.-.+|+|||+..+..+...+.. .++ .+.|||+| .+|+..|..
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq-~P~~~~~~~k~lVV~P-~sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ-FPQAKPLINKPLVVAP-SSLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh-CcCccccccccEEEcc-HHHHHHHHH
Confidence 5899999999887652 347899999999998866655555443 334 57999999 689999999
Q ss_pred HHHHHccccCeeEEEEEcCcch-HHH---HHH---HhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHH
Q 015595 120 VILAIGDFINIQAHACVGGKSV-GED---IRK---LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKD 192 (404)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~---~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~ 192 (404)
++.++.....+....+.+.... ... +.. ..-...+++-+++.+.+....-.....+++|+||.|.+-+.. .
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~--s 393 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSD--S 393 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchh--h
Confidence 9999775445666666665553 111 111 112356888899999888887778888999999999987665 2
Q ss_pred HHHHHHhhCCCCceEEEEeeecch-HHH---------------------------------------------------H
Q 015595 193 QIYDVYRYLPPDLQVVLISATLPH-EIL---------------------------------------------------E 220 (404)
Q Consensus 193 ~~~~~~~~~~~~~~~i~~SAT~~~-~~~---------------------------------------------------~ 220 (404)
.+...+..+ +..+.|++|+||-+ ++. .
T Consensus 394 ~~~kaL~~l-~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~ 472 (776)
T KOG0390|consen 394 LTLKALSSL-KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRE 472 (776)
T ss_pred HHHHHHHhc-CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHH
Confidence 333333333 46678999999621 111 1
Q ss_pred HHHhccCCCeEEEecC--CccccCCceEEEEEecCchh------------------------------------------
Q 015595 221 MTTKFMTDPVKILVKR--DELTLEGIKQFFVAVEREEW------------------------------------------ 256 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------------------------------------------ 256 (404)
+...++. .... -....++...+...+.....
T Consensus 473 ~t~~fi~-----rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~ 547 (776)
T KOG0390|consen 473 LTNKFIL-----RRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCE 547 (776)
T ss_pred HHHhhee-----ecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccc
Confidence 1111110 0000 00011112222222211110
Q ss_pred -------------------------------HHHHHHhhh---hcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecC
Q 015595 257 -------------------------------KFDTLCDLY---DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHG 302 (404)
Q Consensus 257 -------------------------------~~~~l~~~l---~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~ 302 (404)
++..|..++ +.....++++..|.....+.+...++-.|+.+..++|
T Consensus 548 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 548 KTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 122222221 1111234566666666777777777777999999999
Q ss_pred CCCHHHHHHHHHHHhcCCC--c-EEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEE--EEeccC
Q 015595 303 DMPQKERDAIMGEFRSGTT--R-VLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI--NFVKND 377 (404)
Q Consensus 303 ~~~~~~r~~~~~~f~~~~~--~-vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~--~~~~~~ 377 (404)
.++..+|+.+++.|++... . +|.++.+.+.|+++-+++.||++|+.|+++.=.|.++|+.|.||...|+ -++..+
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 9999999999999986543 3 4567789999999999999999999999999999999999999986554 466666
Q ss_pred cHHHHHHHHHHHcc
Q 015595 378 DIKILRDIEQYYST 391 (404)
Q Consensus 378 ~~~~~~~~~~~~~~ 391 (404)
....-....+..++
T Consensus 708 tiEEk~~qrq~~K~ 721 (776)
T KOG0390|consen 708 TIEEKIYQRQTHKE 721 (776)
T ss_pred CchHHHHHHHHHhh
Confidence 55444444444443
No 113
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.91 E-value=1.8e-21 Score=194.98 Aligned_cols=329 Identities=15% Similarity=0.158 Sum_probs=204.0
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHhhh----hhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHH
Q 015595 41 KDDLLRGIYQYGFEKPSAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (404)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~Q~~~~~----~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q 116 (404)
++...+.+...|| ++|+.|.+.++ .+.+++++++.||||+|||++|+++++..+.. +.+++|.+||++|..|
T Consensus 232 ~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~---~~~vvi~t~t~~Lq~Q 307 (850)
T TIGR01407 232 SSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT---EKPVVISTNTKVLQSQ 307 (850)
T ss_pred cHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC---CCeEEEEeCcHHHHHH
Confidence 3456677777888 69999998666 45567889999999999999999998876652 3469999999999999
Q ss_pred HHH-HHHHHccccC--eeEEEEEcCcchH---------------------------------------------------
Q 015595 117 TEK-VILAIGDFIN--IQAHACVGGKSVG--------------------------------------------------- 142 (404)
Q Consensus 117 ~~~-~~~~~~~~~~--~~~~~~~~~~~~~--------------------------------------------------- 142 (404)
+.. .+..+.+.++ +++..+.|+..+-
T Consensus 308 l~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~ 387 (850)
T TIGR01407 308 LLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFA 387 (850)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHH
Confidence 865 4544433322 5555555433210
Q ss_pred --------------------HHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccC-------c---
Q 015595 143 --------------------EDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRG-------F--- 190 (404)
Q Consensus 143 --------------------~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~-------~--- 190 (404)
...+.....++|+|+++..+...+... .+...+++||||||++.+.. +
T Consensus 388 ~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~ 467 (850)
T TIGR01407 388 QVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYA 467 (850)
T ss_pred HhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHH
Confidence 000111123679999998887766432 35667899999999964211 0
Q ss_pred --HHH----------------------------------------------------------------HHHHHhh----
Q 015595 191 --KDQ----------------------------------------------------------------IYDVYRY---- 200 (404)
Q Consensus 191 --~~~----------------------------------------------------------------~~~~~~~---- 200 (404)
... +......
T Consensus 468 ~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 547 (850)
T TIGR01407 468 DIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDD 547 (850)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 000 0000000
Q ss_pred -------C-------------------------------------CCCceEEEEeeecchH-HHHHHHhccCCC--eEEE
Q 015595 201 -------L-------------------------------------PPDLQVVLISATLPHE-ILEMTTKFMTDP--VKIL 233 (404)
Q Consensus 201 -------~-------------------------------------~~~~~~i~~SAT~~~~-~~~~~~~~~~~~--~~~~ 233 (404)
+ ++...+|++|||+... -.+.....++-+ ....
T Consensus 548 ~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~ 627 (850)
T TIGR01407 548 FKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNT 627 (850)
T ss_pred HHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccce
Confidence 0 0124688999999632 123333333321 1111
Q ss_pred ecCCccccCCceEEEEE--ec-----Cchh----HHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhC----CCeEE
Q 015595 234 VKRDELTLEGIKQFFVA--VE-----REEW----KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY----NFTVS 298 (404)
Q Consensus 234 ~~~~~~~~~~~~~~~~~--~~-----~~~~----~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~----~~~~~ 298 (404)
..........-...+.. .+ +... ....+..++.. .+++++||++|.+..+.++..|... ++.
T Consensus 628 ~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~-- 704 (850)
T TIGR01407 628 IEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEFEGYE-- 704 (850)
T ss_pred ecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccccCce--
Confidence 11111111111111111 11 1111 12233344443 4578999999999999999999752 333
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCC--EEEEccCCCC--------------------------
Q 015595 299 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVS--LVINYDLPNN-------------------------- 350 (404)
Q Consensus 299 ~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~--~vi~~~~p~s-------------------------- 350 (404)
.+..+.+ ..|..+++.|++++..||++|..+++|+|+|+.. .||+.++|..
T Consensus 705 ~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~ 783 (850)
T TIGR01407 705 VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYV 783 (850)
T ss_pred EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhh
Confidence 2333332 5788899999999999999999999999999765 6777777632
Q ss_pred ----hhhhhhhccccCCCCCceeEEEEeccC
Q 015595 351 ----RELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 351 ----~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
...+.|.+||+-|..++.-++++++..
T Consensus 784 lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 784 LPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 123569999999997775567777765
No 114
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.90 E-value=3.4e-22 Score=192.20 Aligned_cols=337 Identities=17% Similarity=0.229 Sum_probs=235.6
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHH-HccccCeeEE
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAH 133 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~-~~~~~~~~~~ 133 (404)
.-+..+..+++.+.+++-++++|.||+|||+.....+++....++...++++.-|++--+...++++.+ .+...+..+.
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 568888999999999999999999999999998888887775555666788888987666666665544 2333443443
Q ss_pred EEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc-CCCcccceEEeccccccc-cCcHHHHHHHHhhCCCCceEEEEe
Q 015595 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
.-...... ......+++||.+.+++.+... .+..+..+|+||+|+-.- ..+.-.+.+.+-..+++.++|+||
T Consensus 253 Yqvrl~~~------~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMS 326 (924)
T KOG0920|consen 253 YQVRLESK------RSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMS 326 (924)
T ss_pred EEEeeecc------cCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEee
Confidence 33322211 1123779999999999888764 577889999999998433 333333333333345789999999
Q ss_pred eecchHHHHHHHhccCCCeEEEecCCccccC----------------CceEEE---------------EEecCchhHHHH
Q 015595 212 ATLPHEILEMTTKFMTDPVKILVKRDELTLE----------------GIKQFF---------------VAVEREEWKFDT 260 (404)
Q Consensus 212 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~---------------~~~~~~~~~~~~ 260 (404)
||...+ ....+++....+.+....+... ...+.. ..--+.....+.
T Consensus 327 AT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~l 403 (924)
T KOG0920|consen 327 ATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDL 403 (924)
T ss_pred eecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHH
Confidence 999743 3344555444444443322110 000000 000011112333
Q ss_pred HHhhhhcCCCCeEEEEecchhhHHHHHHHHhhC-------CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccC
Q 015595 261 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY-------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 333 (404)
Q Consensus 261 l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~G 333 (404)
+..+.+....+.+|||.+...+...+.+.|... ...+..+|+.++..+++.+....-.|..+|+++|.+++.+
T Consensus 404 i~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETS 483 (924)
T KOG0920|consen 404 IEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETS 483 (924)
T ss_pred HHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhc
Confidence 444445555788999999999999999999653 2567899999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCC------------------CChhhhhhhccccCCCCCceeEEEEeccCcHH--HH-HHHHHHHccc
Q 015595 334 LDVQQVSLVINYDLP------------------NNRELYIHRIGRSGRFGRKGVAINFVKNDDIK--IL-RDIEQYYSTQ 392 (404)
Q Consensus 334 id~p~~~~vi~~~~p------------------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~--~~-~~~~~~~~~~ 392 (404)
|.++++-.||..+.- .|-+...||.||+||. ++|.||-+++..... .. ..+-+.++.+
T Consensus 484 ITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~~~~~q~PEilR~p 562 (924)
T KOG0920|consen 484 ITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKLMLAYQLPEILRTP 562 (924)
T ss_pred ccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhcccccCChHHHhCh
Confidence 999999999975531 3566778999999998 689999999976332 22 4577778888
Q ss_pred cccCCcccc
Q 015595 393 IDEMPMNVA 401 (404)
Q Consensus 393 ~~~~~~~~~ 401 (404)
+.+++..++
T Consensus 563 L~~l~L~iK 571 (924)
T KOG0920|consen 563 LEELCLHIK 571 (924)
T ss_pred HHHhhheee
Confidence 877776654
No 115
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=7.1e-23 Score=185.56 Aligned_cols=310 Identities=16% Similarity=0.247 Sum_probs=217.2
Q ss_pred CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHH-HHccccCe
Q 015595 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINI 130 (404)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~-~~~~~~~~ 130 (404)
.....+++-.+.+.++.+++-++|.|.||||||......+.+.=.. +.+.++-+.-|.+--+......+. +++-.+|-
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-cCCceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 4446788888999999999999999999999998765544433222 223346667788876766655554 35544443
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHH-HHccCCCcccceEEeccccc--cccCcHHHHHHHHhhCCCCceE
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDM-IKRKTLRTRAIKLLDESDEM--LSRGFKDQIYDVYRYLPPDLQV 207 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~-l~~~~~~~~~~vIiDE~h~~--~~~~~~~~~~~~~~~~~~~~~~ 207 (404)
.+....-=.+. ..+..-+-++|.++|++- +....+..++++|+||+|.- ...-....+..+.+.. ++.++
T Consensus 341 eVGYsIRFEdc------TSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R-pdLKl 413 (902)
T KOG0923|consen 341 EVGYSIRFEDC------TSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR-PDLKL 413 (902)
T ss_pred ccceEEEeccc------cCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC-CcceE
Confidence 33322110000 012355678999998864 45568999999999999972 2223444556665554 68999
Q ss_pred EEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhh---hhcCCCCeEEEEecchhhHH
Q 015595 208 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL---YDTLTITQAVIFCNTKRKVD 284 (404)
Q Consensus 208 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---l~~~~~~k~lIf~~~~~~~~ 284 (404)
+++|||+..+ ..+.++.+...+.+....+ .+..+|...+..+.....+..+ ....+.+.+|||....++.+
T Consensus 414 lIsSAT~DAe---kFS~fFDdapIF~iPGRRy---PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIE 487 (902)
T KOG0923|consen 414 LISSATMDAE---KFSAFFDDAPIFRIPGRRY---PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIE 487 (902)
T ss_pred EeeccccCHH---HHHHhccCCcEEeccCccc---ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHH
Confidence 9999998653 3345665544444433322 2344444445444333344433 34556788999999998888
Q ss_pred HHHHHHhhC---------CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccC--------
Q 015595 285 WLTEKMRGY---------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL-------- 347 (404)
Q Consensus 285 ~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~-------- 347 (404)
...+.|.++ .+.+..+|+.++...+..+++.-..|..+|++||.++++.+.|+++..||.-+.
T Consensus 488 t~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynp 567 (902)
T KOG0923|consen 488 TVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNP 567 (902)
T ss_pred HHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCC
Confidence 777776543 356788999999999999998888899999999999999999999999997553
Q ss_pred ----------CCChhhhhhhccccCCCCCceeEEEEecc
Q 015595 348 ----------PNNRELYIHRIGRSGRFGRKGVAINFVKN 376 (404)
Q Consensus 348 ----------p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 376 (404)
|.|-++..||.||+||.| +|.|+.+|+.
T Consensus 568 rtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 568 RTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred CcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 467788899999999997 8999999984
No 116
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=3.5e-22 Score=192.20 Aligned_cols=125 Identities=18% Similarity=0.273 Sum_probs=110.3
Q ss_pred hhHHHHHHhhhhcC--CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccc
Q 015595 255 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWAR 332 (404)
Q Consensus 255 ~~~~~~l~~~l~~~--~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 332 (404)
..|...+...+... .+.++||||+|++.++.+++.|+..++.+..+|+ ...+|+..+..|..+...|+|||+++++
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 34777887777543 6779999999999999999999999999999997 4778999999999999999999999999
Q ss_pred CCCCC---CCC-----EEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHH
Q 015595 333 GLDVQ---QVS-----LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKI 381 (404)
Q Consensus 333 Gid~p---~~~-----~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 381 (404)
|+|++ .+. +||....|.|...|.|+.||+||.|.+|.+..|++.+|.-+
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 99999 443 45888889999999999999999999999999999876643
No 117
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=1.5e-20 Score=180.49 Aligned_cols=131 Identities=24% Similarity=0.353 Sum_probs=113.7
Q ss_pred HHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCC
Q 015595 257 KFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 334 (404)
Q Consensus 257 ~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gi 334 (404)
+.+.+...+.. ..+.+++|||++++.++.+++.|.+.++.+..+|++++..+|.++++.|+.|+..|+|||+.+++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 44444444433 2467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcc-----CCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHH
Q 015595 335 DVQQVSLVINYD-----LPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQY 388 (404)
Q Consensus 335 d~p~~~~vi~~~-----~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~ 388 (404)
|+|++++|++++ .|.+..+|+|++||+||. ..|.++++++..+..+...+.+.
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999987 688999999999999998 58999999998766555555444
No 118
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=3.8e-22 Score=175.53 Aligned_cols=310 Identities=17% Similarity=0.174 Sum_probs=206.9
Q ss_pred CCcHHHHHhhhhhhcC---CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCee
Q 015595 55 KPSAIQQRAVMPIIKG---RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~---~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~ 131 (404)
++||||...+..+..+ ++-+|..|+|+|||++-..+++.. ..++|++|.+.--+.||..++..+.......
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~d~~ 375 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQ 375 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccCccc
Confidence 6899999999887653 567999999999998866554321 1259999999999999999999887555555
Q ss_pred EEEEEcCcchHHHHHHHhcCCCeEEeChHHHHH----------HHHccCCCcccceEEeccccccccCcHHHHHHHHhhC
Q 015595 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD----------MIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYL 201 (404)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~----------~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~ 201 (404)
+...+.+... ....+++|+|+|+.++.. .+....-.-++++++||+|.+....|.+.+.-+....
T Consensus 376 i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc 450 (776)
T KOG1123|consen 376 ICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC 450 (776)
T ss_pred eEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHh
Confidence 6555544332 234578999999866552 1222234556999999999987777776666654433
Q ss_pred CCCceEEEEeeecchHHHH--------------HHHhcc---CCCeEEEec---CC-------ccccCCc-eEE--EEEe
Q 015595 202 PPDLQVVLISATLPHEILE--------------MTTKFM---TDPVKILVK---RD-------ELTLEGI-KQF--FVAV 251 (404)
Q Consensus 202 ~~~~~~i~~SAT~~~~~~~--------------~~~~~~---~~~~~~~~~---~~-------~~~~~~~-~~~--~~~~ 251 (404)
.+++|||+-.+... .-+..+ +....+.+. +. ++...+. ... +...
T Consensus 451 -----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMN 525 (776)
T KOG1123|consen 451 -----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMN 525 (776)
T ss_pred -----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecC
Confidence 38999997432111 100000 001111100 00 0000000 011 1111
Q ss_pred cCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHh-cCCCcEEEEcCcc
Q 015595 252 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFR-SGTTRVLITTDVW 330 (404)
Q Consensus 252 ~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~~vlv~t~~~ 330 (404)
+..-...+.|....++ .++|+|||..+.-....++-.|.+ ..+.|.+++.+|..+++.|+ +..++.++.+.+.
T Consensus 526 P~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVg 599 (776)
T KOG1123|consen 526 PNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVG 599 (776)
T ss_pred cchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeecc
Confidence 1111123444444444 678999999998887777777655 56789999999999999998 4567889999999
Q ss_pred ccCCCCCCCCEEEEccC-CCChhhhhhhccccCCCCC------ceeEEEEeccCcHHHHHHHH
Q 015595 331 ARGLDVQQVSLVINYDL-PNNRELYIHRIGRSGRFGR------KGVAINFVKNDDIKILRDIE 386 (404)
Q Consensus 331 ~~Gid~p~~~~vi~~~~-p~s~~~~~Q~~GR~~R~g~------~~~~~~~~~~~~~~~~~~~~ 386 (404)
...+|+|.++++|+.+. -.|-.+-.||+||..|..+ .+..+.+++.+...+.+.-+
T Consensus 600 DtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStK 662 (776)
T KOG1123|consen 600 DTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTK 662 (776)
T ss_pred CccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhh
Confidence 99999999999998765 3678889999999998632 25677777777666665443
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=6.7e-21 Score=178.45 Aligned_cols=316 Identities=16% Similarity=0.178 Sum_probs=217.7
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|+ .|++.|.-..-.++.| -+..+.||+|||+++.+++......+.. +-+++|+.-|+.+-++++..+...+|+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~G~~---VhvvT~NdyLA~RDae~m~~ly~~LGL 148 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQGRR---VHVITVNDYLARRDAEWMGPLYEALGL 148 (764)
T ss_pred cCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHcCCC---eEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 466 8999999988888877 4779999999999999988877777665 999999999999999999999999999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHH-----HHHHc----cCCCcccceEEeccccccccC------------
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-----DMIKR----KTLRTRAIKLLDESDEMLSRG------------ 189 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-----~~l~~----~~~~~~~~vIiDE~h~~~~~~------------ 189 (404)
++.++.++.+..++.... .++|.++|...|- +.+.. .....+.+.|+||+|.++-..
T Consensus 149 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~ 226 (764)
T PRK12326 149 TVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTP 226 (764)
T ss_pred EEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCc
Confidence 999998887765444443 4899999986543 22211 123456788999999754110
Q ss_pred ---cHHHHHHHHhhCCCC--------------------------------------------------------------
Q 015595 190 ---FKDQIYDVYRYLPPD-------------------------------------------------------------- 204 (404)
Q Consensus 190 ---~~~~~~~~~~~~~~~-------------------------------------------------------------- 204 (404)
....+..+...+...
T Consensus 227 ~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 306 (764)
T PRK12326 227 GEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIV 306 (764)
T ss_pred chhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 111111111111100
Q ss_pred --------------------------------------------------------ceEEEEeeecchHHHHHHHhccCC
Q 015595 205 --------------------------------------------------------LQVVLISATLPHEILEMTTKFMTD 228 (404)
Q Consensus 205 --------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~ 228 (404)
.++-+||+|...+..++.+-+..
T Consensus 307 ~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l- 385 (764)
T PRK12326 307 RDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDL- 385 (764)
T ss_pred ECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCC-
Confidence 46777777776654444433322
Q ss_pred CeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhh-c-CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCH
Q 015595 229 PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-T-LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 306 (404)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~-~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 306 (404)
++...+.... ................|...+.+-+. . ..+.++||.+.|++..+.+.+.|++.+++...+++...
T Consensus 386 ~Vv~IPtnkp--~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~- 462 (764)
T PRK12326 386 GVSVIPPNKP--NIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND- 462 (764)
T ss_pred cEEECCCCCC--ceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-
Confidence 2222211111 11111111222233345555544433 2 35678999999999999999999999999999998743
Q ss_pred HHHHHHHHHHhcCC-CcEEEEcCccccCCCCCCC---------------CEEEEccCCCChhhhhhhccccCCCCCceeE
Q 015595 307 KERDAIMGEFRSGT-TRVLITTDVWARGLDVQQV---------------SLVINYDLPNNRELYIHRIGRSGRFGRKGVA 370 (404)
Q Consensus 307 ~~r~~~~~~f~~~~-~~vlv~t~~~~~Gid~p~~---------------~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~ 370 (404)
.+-.+++. +.|. ..|.|||.++++|.|+.-- =+||....+.|..--.|..||+||.|.+|.+
T Consensus 463 ~~EA~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss 540 (764)
T PRK12326 463 AEEARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSS 540 (764)
T ss_pred HhHHHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCce
Confidence 22233333 2454 4688999999999998621 2788888899999999999999999999999
Q ss_pred EEEeccCcHH
Q 015595 371 INFVKNDDIK 380 (404)
Q Consensus 371 ~~~~~~~~~~ 380 (404)
.+|++-+|.-
T Consensus 541 ~f~lSleDdl 550 (764)
T PRK12326 541 VFFVSLEDDV 550 (764)
T ss_pred eEEEEcchhH
Confidence 9999876543
No 120
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=4.4e-22 Score=174.48 Aligned_cols=326 Identities=16% Similarity=0.215 Sum_probs=221.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEccc
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (404)
.+++|+..|+++...+.+++..-...|.++.+.++.+.+++.+++.|.||||||.....|.+....... ..+...-|.
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQpr 100 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPR 100 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCch
Confidence 388999999999999999988777788888999998888999999999999999988888877665544 236666788
Q ss_pred HHHHHHHHHHHHH-HccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHH-HHHccCCCcccceEEeccccc--c
Q 015595 111 RELATQTEKVILA-IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKTLRTRAIKLLDESDEM--L 186 (404)
Q Consensus 111 ~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~-~l~~~~~~~~~~vIiDE~h~~--~ 186 (404)
+.-+.+...+... +.-.+|..++....-.+.... ..-+-+||.+.+++ .+....+..++++|+||+|.- .
T Consensus 101 rvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~------~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlA 174 (699)
T KOG0925|consen 101 RVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSP------NTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLA 174 (699)
T ss_pred HHHHHHHHHHHHHHhccccchhccccccccccCCh------hHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHH
Confidence 8767666655543 322233333222111111000 01122566666664 445567889999999999972 2
Q ss_pred ccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCch---hHHHHHHh
Q 015595 187 SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE---WKFDTLCD 263 (404)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~ 263 (404)
.......++.+.... ++.++|.||||+... ....+++++-.+.+.. . ..++.+|..-...+ .....+.+
T Consensus 175 TDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg-~---~PvEi~Yt~e~erDylEaairtV~q 246 (699)
T KOG0925|consen 175 TDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG-T---HPVEIFYTPEPERDYLEAAIRTVLQ 246 (699)
T ss_pred HHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCC-C---CceEEEecCCCChhHHHHHHHHHHH
Confidence 333445566666555 599999999998543 3445666655444433 1 12223333322222 23444555
Q ss_pred hhhcCCCCeEEEEecchhhHHHHHHHHhhC---------CCeEEEecCCCCHHHHHHHHHHHh---cC--CCcEEEEcCc
Q 015595 264 LYDTLTITQAVIFCNTKRKVDWLTEKMRGY---------NFTVSSMHGDMPQKERDAIMGEFR---SG--TTRVLITTDV 329 (404)
Q Consensus 264 ~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~---~~--~~~vlv~t~~ 329 (404)
+......+.+++|....++.+..++.+... .+.+..++ +..+..+++-.. +| ..+|+|+|.+
T Consensus 247 ih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstni 322 (699)
T KOG0925|consen 247 IHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNI 322 (699)
T ss_pred HHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecc
Confidence 555566788999999999988888877632 24677777 333333333222 12 3579999999
Q ss_pred cccCCCCCCCCEEEEccC------------------CCChhhhhhhccccCCCCCceeEEEEeccC
Q 015595 330 WARGLDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 330 ~~~Gid~p~~~~vi~~~~------------------p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
++..+.++++.+||..+. |.|..+..||.||+||. ++|.|+.+|+++
T Consensus 323 aetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 323 AETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred hheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 999999999999997553 56888999999999998 689999999875
No 121
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=4.5e-22 Score=180.89 Aligned_cols=310 Identities=15% Similarity=0.237 Sum_probs=205.9
Q ss_pred CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHH-HccccCe
Q 015595 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINI 130 (404)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~-~~~~~~~ 130 (404)
.+......+.+.+..+.+++-++|.+.||||||......++..=... +.-+-+.-|.+.-+......+.+ ++..+|.
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~--~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD--NGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc--CCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 34456677888888888888899999999999987554433221111 12234445888777777666554 5444444
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHH-HHHHccCCCcccceEEecccccc-ccC-cHHHHHHHHhhCCCCceE
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRKTLRTRAIKLLDESDEML-SRG-FKDQIYDVYRYLPPDLQV 207 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~l~~~~~~~~~~vIiDE~h~~~-~~~-~~~~~~~~~~~~~~~~~~ 207 (404)
.+....-=.+. ......|-++|-+.|+ +.+....++.+++||+||||.-. +.. ....+..++.. +.+.++
T Consensus 431 ~VGYsIRFEdv------T~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKl 503 (1042)
T KOG0924|consen 431 TVGYSIRFEDV------TSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKL 503 (1042)
T ss_pred ccceEEEeeec------CCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceE
Confidence 44332210110 0123567789988877 46666789999999999999732 222 22233333333 458899
Q ss_pred EEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHH---hhhhcCCCCeEEEEecchhhHH
Q 015595 208 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLC---DLYDTLTITQAVIFCNTKRKVD 284 (404)
Q Consensus 208 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~l~~~~~~k~lIf~~~~~~~~ 284 (404)
|.+|||+... ....++++...+.+....+. +...+...+..+..-..+. .+......+.+|||....+..+
T Consensus 504 iVtSATm~a~---kf~nfFgn~p~f~IpGRTyP---V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE 577 (1042)
T KOG0924|consen 504 IVTSATMDAQ---KFSNFFGNCPQFTIPGRTYP---VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIE 577 (1042)
T ss_pred EEeeccccHH---HHHHHhCCCceeeecCCccc---eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchh
Confidence 9999998653 33356664444444444332 2233333332222222222 2333445678999999877655
Q ss_pred HHHHH----HhhC------CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccC-------
Q 015595 285 WLTEK----MRGY------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL------- 347 (404)
Q Consensus 285 ~l~~~----l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~------- 347 (404)
-.+.. |.+. ++.+..+++.++..-+.++++.-..|..+++|||.+++..+.+|++.+||..+.
T Consensus 578 ~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn 657 (1042)
T KOG0924|consen 578 CTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYN 657 (1042)
T ss_pred HHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecc
Confidence 44444 4332 578899999999999999998888889999999999999999999999997653
Q ss_pred -----------CCChhhhhhhccccCCCCCceeEEEEeccC
Q 015595 348 -----------PNNRELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 348 -----------p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
|.|-+..-||.|||||.| +|.||-+|+++
T Consensus 658 ~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 658 PRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred cccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 567778889999999996 89999999974
No 122
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.8e-21 Score=179.93 Aligned_cols=305 Identities=19% Similarity=0.224 Sum_probs=201.1
Q ss_pred HHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCC---CceeEEEEcccHHHHHHHHHHHHHHccccCee--EEEE
Q 015595 61 QRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILSPTRELATQTEKVILAIGDFINIQ--AHAC 135 (404)
Q Consensus 61 ~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~--~~~~ 135 (404)
++++++|.++.-+||||.||||||+.....+.+.=.... .+.-+=|.-|++--+..+..+...-...++.. +..-
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR 341 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR 341 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE
Confidence 467788888888999999999999876655554332221 12345566688766666655554322223333 3333
Q ss_pred EcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc-CCCcccceEEeccccccccC-----cHHHHHHHHhhCC------C
Q 015595 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDEMLSRG-----FKDQIYDVYRYLP------P 203 (404)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~~~~~~-----~~~~~~~~~~~~~------~ 203 (404)
+.++- .....|-++|.+.|++-+.+. .+..+++||+||||.-.-.. ....+-.+.+.+. +
T Consensus 342 fd~ti--------~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~k 413 (1172)
T KOG0926|consen 342 FDGTI--------GEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIK 413 (1172)
T ss_pred ecccc--------CCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 33332 234789999999999888776 57788999999999732211 1122222222222 2
Q ss_pred CceEEEEeeecchHHHHHHHhccCCCe-EEEecCCccccCCceEEEEEe---cCchhHHHHHHhhhhcCCCCeEEEEecc
Q 015595 204 DLQVVLISATLPHEILEMTTKFMTDPV-KILVKRDELTLEGIKQFFVAV---EREEWKFDTLCDLYDTLTITQAVIFCNT 279 (404)
Q Consensus 204 ~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~k~lIf~~~ 279 (404)
..++|+||||+.-.-..--+.++..+- .+.++.+.+. +.-++..- +--...+...+.+.+..+.+.+|||+-.
T Consensus 414 pLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfP---VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTG 490 (1172)
T KOG0926|consen 414 PLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFP---VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTG 490 (1172)
T ss_pred ceeEEEEeeeEEecccccCceecCCCCceeeeecccCc---eEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeC
Confidence 678999999985432221222332222 2222222211 11111111 1112356777788888999999999999
Q ss_pred hhhHHHHHHHHhhCCC------e---------------------------------------------------------
Q 015595 280 KRKVDWLTEKMRGYNF------T--------------------------------------------------------- 296 (404)
Q Consensus 280 ~~~~~~l~~~l~~~~~------~--------------------------------------------------------- 296 (404)
..++..+++.|++... +
T Consensus 491 QqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~ 570 (1172)
T KOG0926|consen 491 QQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNA 570 (1172)
T ss_pred hHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhc
Confidence 9999999999976410 0
Q ss_pred ------------------------------------EEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCC
Q 015595 297 ------------------------------------VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVS 340 (404)
Q Consensus 297 ------------------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~ 340 (404)
|..+++-++.+++..+++.-..|..-++|+|.++++.+.||++.
T Consensus 571 ~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIk 650 (1172)
T KOG0926|consen 571 LADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIK 650 (1172)
T ss_pred cccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCee
Confidence 56667777788888888877788888999999999999999999
Q ss_pred EEEEccCC------------------CChhhhhhhccccCCCCCceeEEEEeccC
Q 015595 341 LVINYDLP------------------NNRELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 341 ~vi~~~~p------------------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
.||..+.. .|-++--||.|||||.| .|.||.+|+..
T Consensus 651 YVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 651 YVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred EEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 99986642 24555679999999997 89999999865
No 123
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=5.9e-21 Score=179.92 Aligned_cols=158 Identities=14% Similarity=0.139 Sum_probs=116.1
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccC-eeEE
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN-IQAH 133 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~-~~~~ 133 (404)
.|..||.+....+-.+.+++|.|||.+|||++...++-..+..... ..++++.|+++|+.|....+........ ....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~-~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDS-DVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCC-CEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 6889999999888888999999999999999988877666655554 4599999999999999888766442221 1112
Q ss_pred EEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc-----CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEE
Q 015595 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-----TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 208 (404)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-----~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 208 (404)
.+.|.......+.. -.|+|+|+-|+.+..++-.. .....+++|+||+|.+.+..-...+..+.... .++.+
T Consensus 590 sl~g~ltqEYsinp--~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L 665 (1330)
T KOG0949|consen 590 SLLGDLTQEYSINP--WNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFL 665 (1330)
T ss_pred hhHhhhhHHhcCCc--hhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCee
Confidence 22222222222221 14899999999999887652 45678999999999998877666666666664 45589
Q ss_pred EEeeecchH
Q 015595 209 LISATLPHE 217 (404)
Q Consensus 209 ~~SAT~~~~ 217 (404)
++|||..+.
T Consensus 666 ~LSATigN~ 674 (1330)
T KOG0949|consen 666 VLSATIGNP 674 (1330)
T ss_pred EEecccCCH
Confidence 999998653
No 124
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.2e-19 Score=161.50 Aligned_cols=174 Identities=24% Similarity=0.298 Sum_probs=128.2
Q ss_pred ceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhc-CCCCeEEEEecchhhH
Q 015595 205 LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT-LTITQAVIFCNTKRKV 283 (404)
Q Consensus 205 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~k~lIf~~~~~~~ 283 (404)
.|+|++||||.+.-.+... +..+...+.+....-+.+. .-+......+.+.++-+. ..+.+++|-+=+++.|
T Consensus 387 ~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP~ie----vRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDPEIE----VRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCCcee----eecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 6999999999875333221 1222223322222222111 112222233344444332 3457999999999999
Q ss_pred HHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccC-----CCChhhhhhhc
Q 015595 284 DWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL-----PNNRELYIHRI 358 (404)
Q Consensus 284 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~-----p~s~~~~~Q~~ 358 (404)
+.+.++|.+.|+++..+|++...-+|.++++.++.|..+|||+-..+-+|+|+|.|+.|.++|. ..|..+++|.+
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988875 46899999999
Q ss_pred cccCCCCCceeEEEEeccCcHHHHHHHH
Q 015595 359 GRSGRFGRKGVAINFVKNDDIKILRDIE 386 (404)
Q Consensus 359 GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 386 (404)
|||.|. -.|.++++.+.-...+-+.+.
T Consensus 540 GRAARN-~~GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 540 GRAARN-VNGKVILYADKITDSMQKAID 566 (663)
T ss_pred HHHhhc-cCCeEEEEchhhhHHHHHHHH
Confidence 999996 578998888765444433333
No 125
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=1.2e-19 Score=175.73 Aligned_cols=143 Identities=26% Similarity=0.376 Sum_probs=124.2
Q ss_pred HHHHHHhhhhcC--CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCC
Q 015595 257 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 334 (404)
Q Consensus 257 ~~~~l~~~l~~~--~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gi 334 (404)
+...+...+... .+.+++|||++...++.+++.|...++.+..+|++++..+|..+++.|+.|...|+|||+.+++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 344444444332 467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccC-----CCChhhhhhhccccCCCCCceeEEEEecc---------CcHHHHHHHHHHHccccccCCccc
Q 015595 335 DVQQVSLVINYDL-----PNNRELYIHRIGRSGRFGRKGVAINFVKN---------DDIKILRDIEQYYSTQIDEMPMNV 400 (404)
Q Consensus 335 d~p~~~~vi~~~~-----p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
|+|+++.|++++. |.+..+|+||+||+||. ..|.++.+++. .+....+.++..++.....+|..+
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 9999999998875 68999999999999996 68999999984 466777788888888888888665
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=6.5e-20 Score=176.05 Aligned_cols=315 Identities=16% Similarity=0.206 Sum_probs=210.6
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|. .|++.|.-.--.+. ..-|..+.||+|||+++.++++.....+.. +-+++|+.-|+.+-++++..+...+|+
T Consensus 79 lGm-~~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al~G~~---VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNALSGKG---VHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred hCC-CcchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHHcCCC---EEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 465 78888876544444 446889999999999999988877777665 999999999999999999999999999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHH-HHHHHcc--------CCCcccceEEeccccccccC------------
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK--------TLRTRAIKLLDESDEMLSRG------------ 189 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~--------~~~~~~~vIiDE~h~~~~~~------------ 189 (404)
++.++.++.+..++..... ++|+++|...| .++|... ....+.++||||+|.++-..
T Consensus 153 ~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~ 230 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAE 230 (913)
T ss_pred EEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCc
Confidence 9999988776655544433 89999999775 2222222 23667899999999854110
Q ss_pred ----cHHHHHHHHhhCC-------------------CC------------------------------------------
Q 015595 190 ----FKDQIYDVYRYLP-------------------PD------------------------------------------ 204 (404)
Q Consensus 190 ----~~~~~~~~~~~~~-------------------~~------------------------------------------ 204 (404)
....+..+...+. .+
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i 310 (913)
T PRK13103 231 DSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHV 310 (913)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHH
Confidence 0001111101000 00
Q ss_pred --------------------------------------------------------------------------ceEEEE
Q 015595 205 --------------------------------------------------------------------------LQVVLI 210 (404)
Q Consensus 205 --------------------------------------------------------------------------~~~i~~ 210 (404)
.++-+|
T Consensus 311 ~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGM 390 (913)
T PRK13103 311 YAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGM 390 (913)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccC
Confidence 355566
Q ss_pred eeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhc--CCCCeEEEEecchhhHHHHHH
Q 015595 211 SATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTE 288 (404)
Q Consensus 211 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~ 288 (404)
|+|...+..++..-+-. ++...+............ ........|...+.+-+.. ..+.++||-+.|++..+.+++
T Consensus 391 TGTa~te~~Ef~~iY~l-~Vv~IPTnkP~~R~D~~d--~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~ 467 (913)
T PRK13103 391 TGTADTEAFEFRQIYGL-DVVVIPPNKPLARKDFND--LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSN 467 (913)
T ss_pred CCCCHHHHHHHHHHhCC-CEEECCCCCCcccccCCC--eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHH
Confidence 66665444443332222 222221111111111111 1222333466555544432 356789999999999999999
Q ss_pred HHhhCCCeEEEecCCCCHHHHHHHHHHHhcCC-CcEEEEcCccccCCCCC------------------------------
Q 015595 289 KMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT-TRVLITTDVWARGLDVQ------------------------------ 337 (404)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~vlv~t~~~~~Gid~p------------------------------ 337 (404)
.|+..+++...+++..... -.+++. +.|. -.|.|||.++++|.||.
T Consensus 468 ~L~~~gi~h~VLNAk~~~~-EA~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (913)
T PRK13103 468 LLKKEGIEHKVLNAKYHEK-EAEIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKR 544 (913)
T ss_pred HHHHcCCcHHHhccccchh-HHHHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhH
Confidence 9999999888888764322 233333 3554 46899999999999984
Q ss_pred -------CCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcH
Q 015595 338 -------QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 379 (404)
Q Consensus 338 -------~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 379 (404)
+=-+||-...+.|..-=.|..||+||.|.+|.+..|++-+|.
T Consensus 545 ~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 545 HQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 112677788889999999999999999999999999997654
No 127
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.86 E-value=3.3e-20 Score=155.70 Aligned_cols=185 Identities=35% Similarity=0.587 Sum_probs=146.1
Q ss_pred HCCCCCCcHHHHHhhhhhhcC-CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHcccc
Q 015595 50 QYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (404)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~-~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 128 (404)
..++..++++|.+++..+... +..++.++||+|||.++..++...+.... ..++++++|+.+++.|+...+.+.....
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 346678999999999999988 89999999999999988888888776543 3469999999999999999998877554
Q ss_pred CeeEEEEEcCcchHHHHHHHhcCC-CeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHHHhhCCCCc
Q 015595 129 NIQAHACVGGKSVGEDIRKLEHGV-HVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDL 205 (404)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 205 (404)
........++......+.....+. +++++|++.+.+.+... ....++++|+||+|.+....+...+..++..+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 161 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV 161 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccc
Confidence 433334444444344555555555 99999999999988874 456678999999999887566778888888877789
Q ss_pred eEEEEeeecchHHHHHHHhccCCCeEEEec
Q 015595 206 QVVLISATLPHEILEMTTKFMTDPVKILVK 235 (404)
Q Consensus 206 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 235 (404)
+++++|||+++........+......+...
T Consensus 162 ~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 162 QLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred eEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 999999999988888777777655554443
No 128
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.86 E-value=2e-19 Score=158.26 Aligned_cols=327 Identities=14% Similarity=0.157 Sum_probs=215.8
Q ss_pred CCCcHHHHHhhhhhh-cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeE
Q 015595 54 EKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~-~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~ 132 (404)
..+-|+|.+.+...+ +|.++++...+|-|||..++. +...+.+.-+ .||+|| .++.-.|.+.++++....- .+
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyraEwp---lliVcP-AsvrftWa~al~r~lps~~-pi 270 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYRAEWP---LLIVCP-ASVRFTWAKALNRFLPSIH-PI 270 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHhhcCc---EEEEec-HHHhHHHHHHHHHhccccc-ce
Confidence 468999999887654 578899999999999987665 4444444433 899999 5678889999988764432 24
Q ss_pred EEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEee
Q 015595 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 212 (404)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 212 (404)
.++.++.+.... +.....|.|.+++.+..+..-..-..+.++|+||+|.+.+.. ....+.+...+....++|++|+
T Consensus 271 ~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvILLSG 346 (689)
T KOG1000|consen 271 FVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVILLSG 346 (689)
T ss_pred EEEecccCCccc---cccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheEEecC
Confidence 444444332211 112256889999887765554445557999999999876554 3335555555555677999999
Q ss_pred ecc----h---------------HHHHHHHhccCCC---eEEEecCCcc------------------------ccCCceE
Q 015595 213 TLP----H---------------EILEMTTKFMTDP---VKILVKRDEL------------------------TLEGIKQ 246 (404)
Q Consensus 213 T~~----~---------------~~~~~~~~~~~~~---~~~~~~~~~~------------------------~~~~~~~ 246 (404)
|+. . ...++..+++.-. .......... -++.-+.
T Consensus 347 TPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~ 426 (689)
T KOG1000|consen 347 TPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRRE 426 (689)
T ss_pred CcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceE
Confidence 972 1 1222222222110 0000000000 0111111
Q ss_pred EEEEecCc------------------------------------hhHHHHHHhhhh------cCCCCeEEEEecchhhHH
Q 015595 247 FFVAVERE------------------------------------EWKFDTLCDLYD------TLTITQAVIFCNTKRKVD 284 (404)
Q Consensus 247 ~~~~~~~~------------------------------------~~~~~~l~~~l~------~~~~~k~lIf~~~~~~~~ 284 (404)
........ ..|...+.+.+. ..++.|.+||+......+
T Consensus 427 Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd 506 (689)
T KOG1000|consen 427 VVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLD 506 (689)
T ss_pred EEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHH
Confidence 11111110 012333333322 235568999999999999
Q ss_pred HHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcC-CCcE-EEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccC
Q 015595 285 WLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSG-TTRV-LITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSG 362 (404)
Q Consensus 285 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~v-lv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~ 362 (404)
-+...+.++++....++|.++..+|....+.|+.+ +..| +++..+++.|+++...+.|++..+++++.-++|.-.|+.
T Consensus 507 ~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaH 586 (689)
T KOG1000|consen 507 TIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAH 586 (689)
T ss_pred HHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhh
Confidence 99999999999999999999999999999999865 4454 456689999999999999999999999999999999999
Q ss_pred CCCCceeEEE--EeccC--cHHHHHHHHHHHc
Q 015595 363 RFGRKGVAIN--FVKND--DIKILRDIEQYYS 390 (404)
Q Consensus 363 R~g~~~~~~~--~~~~~--~~~~~~~~~~~~~ 390 (404)
|.||+.-+.+ ++..+ |...+..+.+.+.
T Consensus 587 RiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 587 RIGQKSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred hccccceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 9999854333 33333 5555565655554
No 129
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.86 E-value=3.1e-20 Score=179.13 Aligned_cols=319 Identities=16% Similarity=0.167 Sum_probs=218.0
Q ss_pred CCCcHHHHHhhhhhh----cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccC
Q 015595 54 EKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~----~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 129 (404)
.++|.||.+.++.++ .++++|+...+|.|||......+.............|+++|...+ ..|.+++.... .
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~-~~W~~ef~~w~---~ 444 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTI-TAWEREFETWT---D 444 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhh-HHHHHHHHHHh---h
Confidence 589999999988755 478999999999999976655554444444333348999997664 45677776654 5
Q ss_pred eeEEEEEcCcchHHHHHHHh----c-----CCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhh
Q 015595 130 IQAHACVGGKSVGEDIRKLE----H-----GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRY 200 (404)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~----~-----~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~ 200 (404)
.++++.+|.......++... . ..+++++|++.++.--....--.+.++++||||++.+.. ..+...+..
T Consensus 445 mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~--~~l~~~l~~ 522 (1373)
T KOG0384|consen 445 MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDE--SKLYESLNQ 522 (1373)
T ss_pred hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchH--HHHHHHHHH
Confidence 67788888877666555432 2 378999999988754443334456888999999997654 233333444
Q ss_pred CCCCceEEEEeeecch-HHHHHHHhc-cCCCeEEEec---------------------------------CCccccCCce
Q 015595 201 LPPDLQVVLISATLPH-EILEMTTKF-MTDPVKILVK---------------------------------RDELTLEGIK 245 (404)
Q Consensus 201 ~~~~~~~i~~SAT~~~-~~~~~~~~~-~~~~~~~~~~---------------------------------~~~~~~~~~~ 245 (404)
+.-+. .+++|+||-. .+.+++.-. +..|...... .+...++..+
T Consensus 523 f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E 601 (1373)
T KOG0384|consen 523 FKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEE 601 (1373)
T ss_pred hcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcc
Confidence 44333 5778888743 333333111 0011100000 0000001111
Q ss_pred EEEE------------------------------------------------EecCchh----H------HHHHHhhhhc
Q 015595 246 QFFV------------------------------------------------AVEREEW----K------FDTLCDLYDT 267 (404)
Q Consensus 246 ~~~~------------------------------------------------~~~~~~~----~------~~~l~~~l~~ 267 (404)
++.. .+...+. . ...|..++..
T Consensus 602 ~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~s 681 (1373)
T KOG0384|consen 602 TILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQS 681 (1373)
T ss_pred eEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHh
Confidence 1100 0000000 0 1233333332
Q ss_pred ---------------CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcC---CCcEEEEcCc
Q 015595 268 ---------------LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSG---TTRVLITTDV 329 (404)
Q Consensus 268 ---------------~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~---~~~vlv~t~~ 329 (404)
..+++||||..-....+.|+++|..++++.-.+.|....+.|+..+..|+.. ...+|++|.+
T Consensus 682 SGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRA 761 (1373)
T KOG0384|consen 682 SGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRA 761 (1373)
T ss_pred cCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEeccc
Confidence 1347899999999999999999999999999999999999999999999853 4678899999
Q ss_pred cccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCc--eeEEEEeccCcH
Q 015595 330 WARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK--GVAINFVKNDDI 379 (404)
Q Consensus 330 ~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~~~ 379 (404)
.+-|||+-.+++||+||..|++..=+|...|+.|.||. -.+|-+++.+.+
T Consensus 762 GGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 762 GGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred CcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 99999999999999999999999999999999999987 567888887743
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.86 E-value=5e-19 Score=175.02 Aligned_cols=314 Identities=16% Similarity=0.196 Sum_probs=194.2
Q ss_pred CCCCCCcHHHHHhhhhhh----cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHH-HHHHHHHc
Q 015595 51 YGFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT-EKVILAIG 125 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~----~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~-~~~~~~~~ 125 (404)
.|| ++|+-|.+....+. +++.+++.|+||+|||++|+++++... .+.+++|.+||++|++|. ...+..+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 456 79999998655543 467789999999999999999987653 235799999999999999 46676666
Q ss_pred cccCeeEEEEEcCcchH-----------------------------------------------HHHH------------
Q 015595 126 DFINIQAHACVGGKSVG-----------------------------------------------EDIR------------ 146 (404)
Q Consensus 126 ~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~------------ 146 (404)
+..++++..+.|+..+- .-|.
T Consensus 317 ~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 317 EVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred HhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 66666666555543210 0000
Q ss_pred ------------HHhcCCCeEEeChHHHHHHHHcc-CCCcccceEEeccccccccC-----c-------HH---------
Q 015595 147 ------------KLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDEMLSRG-----F-------KD--------- 192 (404)
Q Consensus 147 ------------~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~~~~~~-----~-------~~--------- 192 (404)
.....++|+|+++..|...+... .+...+.+||||||++.+.. . ..
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 476 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKDFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSGP 476 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccCCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHHH
Confidence 01123679999998877765433 46788999999999964221 0 00
Q ss_pred -----------------------------------------HH-----------HHHHhh--------------------
Q 015595 193 -----------------------------------------QI-----------YDVYRY-------------------- 200 (404)
Q Consensus 193 -----------------------------------------~~-----------~~~~~~-------------------- 200 (404)
.+ ..++..
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~l 556 (820)
T PRK07246 477 LPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTYL 556 (820)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeEE
Confidence 00 000000
Q ss_pred -------------CCCCceEEEEeeecc--hHHHHHHHhccCCCeEEEecCCccccCCceEEEEE--ecC-----chhH-
Q 015595 201 -------------LPPDLQVVLISATLP--HEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA--VER-----EEWK- 257 (404)
Q Consensus 201 -------------~~~~~~~i~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~- 257 (404)
++....+|++|||++ +.. .+ ...++-........ ..........+.. .+. ....
T Consensus 557 ~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~-~~~lGl~~~~~~~~-~~~~~~~~~~~i~~~~p~~~~~~~~~~~ 633 (820)
T PRK07246 557 NSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SL-ADLLGFEEYLFHKI-EKDKKQDQLVVVDQDMPLVTETSDEVYA 633 (820)
T ss_pred EeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cH-HHHcCCCccceecC-CCChHHccEEEeCCCCCCCCCCChHHHH
Confidence 001146788999985 222 22 22222111111000 1111111111111 111 1111
Q ss_pred ---HHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCC
Q 015595 258 ---FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 334 (404)
Q Consensus 258 ---~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gi 334 (404)
.+.+..+. ..+++++|+++|.+..+.+++.|......+ ...|... .+..++++|++++..||++|..+.+|+
T Consensus 634 ~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGV 708 (820)
T PRK07246 634 EEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCC
Confidence 22233333 356899999999999999999997654444 3334322 346689999998889999999999999
Q ss_pred CCCC--CCEEEEccCCCC------------------------------hhhhhhhccccCCCCCceeEEEEeccC
Q 015595 335 DVQQ--VSLVINYDLPNN------------------------------RELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 335 d~p~--~~~vi~~~~p~s------------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
|+|. ...||+.++|.. ...+.|.+||+-|...+.-+++++++.
T Consensus 709 D~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 709 DFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred CCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 9983 556777776632 223569999999987665467777765
No 131
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.85 E-value=3.9e-20 Score=178.02 Aligned_cols=318 Identities=18% Similarity=0.234 Sum_probs=212.5
Q ss_pred CCcHHHHHhhhhh--hc--CCcEEEEcCCCCchhhHhHHHHHhhhhcCC------CceeEEEEcccHHHHHHHHHHHHHH
Q 015595 55 KPSAIQQRAVMPI--IK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSS------REVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 55 ~~~~~Q~~~~~~~--~~--~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~------~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
.+|.||++.++.+ ++ +-+-|+|.++|-|||+..+-.++.-....+ .....||+|| .+|+.-|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHHh
Confidence 6899999998763 33 246799999999999887665543332220 1223899999 57999999999998
Q ss_pred ccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCC
Q 015595 125 GDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPD 204 (404)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~ 204 (404)
... +++....|+.......+.-.+..+|+|++++.+.+-.....-..+.++|+||-|-+.+.. ..+....+.+...
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~k--tkl~kavkqL~a~ 1129 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSK--TKLTKAVKQLRAN 1129 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchH--HHHHHHHHHHhhc
Confidence 866 555555666555545444445689999999998865554444566899999999876654 3344444444434
Q ss_pred ceEEEEeeecch-HHHHHHHhc-----------------cCC--------------------------------------
Q 015595 205 LQVVLISATLPH-EILEMTTKF-----------------MTD-------------------------------------- 228 (404)
Q Consensus 205 ~~~i~~SAT~~~-~~~~~~~~~-----------------~~~-------------------------------------- 228 (404)
. .+.+|+||-. +..+++.-+ ++.
T Consensus 1130 h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlK 1208 (1549)
T KOG0392|consen 1130 H-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLK 1208 (1549)
T ss_pred c-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3 5778999621 111111100 000
Q ss_pred -------CeE----EEecC------------------------CccccCCc----------------eEEEEEec-----
Q 015595 229 -------PVK----ILVKR------------------------DELTLEGI----------------KQFFVAVE----- 252 (404)
Q Consensus 229 -------~~~----~~~~~------------------------~~~~~~~~----------------~~~~~~~~----- 252 (404)
|.. ++++- ......+. .+......
T Consensus 1209 edVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~ 1288 (1549)
T KOG0392|consen 1209 EDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPD 1288 (1549)
T ss_pred HHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcch
Confidence 000 00000 00000000 00000000
Q ss_pred ------------------CchhHHHHHHhhhhcC----------------CCCeEEEEecchhhHHHHHHHHhhC---CC
Q 015595 253 ------------------REEWKFDTLCDLYDTL----------------TITQAVIFCNTKRKVDWLTEKMRGY---NF 295 (404)
Q Consensus 253 ------------------~~~~~~~~l~~~l~~~----------------~~~k~lIf~~~~~~~~~l~~~l~~~---~~ 295 (404)
....|+..|..++... .++++||||.-+...+.+.+-|.+. .+
T Consensus 1289 la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsV 1368 (1549)
T KOG0392|consen 1289 LAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSV 1368 (1549)
T ss_pred HHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCce
Confidence 1123566666666542 2358999999999999988777554 33
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcC-CCcEE-EEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCce--eEE
Q 015595 296 TVSSMHGDMPQKERDAIMGEFRSG-TTRVL-ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAI 371 (404)
Q Consensus 296 ~~~~~~~~~~~~~r~~~~~~f~~~-~~~vl-v~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~--~~~ 371 (404)
....+.|..++.+|.++.++|+++ .++|| ++|.+.+-|+|+.++++||++.-.|++..=.|.+.||.|.||+. .+|
T Consensus 1369 tymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1369 TYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred eEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeee
Confidence 455899999999999999999988 67776 57789999999999999999999999999999999999999885 456
Q ss_pred EEeccCc
Q 015595 372 NFVKNDD 378 (404)
Q Consensus 372 ~~~~~~~ 378 (404)
.+++...
T Consensus 1449 RlItrGT 1455 (1549)
T KOG0392|consen 1449 RLITRGT 1455 (1549)
T ss_pred eehhccc
Confidence 6666653
No 132
>COG4889 Predicted helicase [General function prediction only]
Probab=99.85 E-value=5.2e-21 Score=178.44 Aligned_cols=346 Identities=18% Similarity=0.225 Sum_probs=198.1
Q ss_pred HHHHHHHCCCCCCcHHHHHhhhhhhcC----CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHH
Q 015595 44 LLRGIYQYGFEKPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (404)
Q Consensus 44 ~~~~l~~~~~~~~~~~Q~~~~~~~~~~----~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~ 119 (404)
+...+.-..-..|||||+.++.+..++ .+-=+.+++|+|||+.++-.+ +.+.. .++|+++|+.+|..|..+
T Consensus 150 ~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkis-Eala~----~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 150 LQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKIS-EALAA----ARILFLVPSISLLSQTLR 224 (1518)
T ss_pred cccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHH-HHHhh----hheEeecchHHHHHHHHH
Confidence 344444444558999999999987775 334567889999999987644 44333 469999999999999888
Q ss_pred HHHHHccccCeeEEEEEcCcchH-----------------------HHHH--HHhcCCCeEEeChHHHHHHH--HccCCC
Q 015595 120 VILAIGDFINIQAHACVGGKSVG-----------------------EDIR--KLEHGVHVVSGTPGRVCDMI--KRKTLR 172 (404)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~--~~~~~~~iiv~T~~~l~~~l--~~~~~~ 172 (404)
+...-. ...+....++.+...+ ..+. ....+--|+++|++.+...- ++..++
T Consensus 225 ew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~ 303 (1518)
T COG4889 225 EWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLD 303 (1518)
T ss_pred HHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCC
Confidence 776533 2334433333322211 1111 11234568889998887654 345789
Q ss_pred cccceEEeccccccccCcHHHHHHHHhhCC-----CCceEEEEeeecchH---HHHHHHh--------------------
Q 015595 173 TRAIKLLDESDEMLSRGFKDQIYDVYRYLP-----PDLQVVLISATLPHE---ILEMTTK-------------------- 224 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~-----~~~~~i~~SAT~~~~---~~~~~~~-------------------- 224 (404)
.++++|.||+|+.....+...=...+.... +..+.+.|||||.-. .+...+.
T Consensus 304 ~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~r 383 (1518)
T COG4889 304 EFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHR 383 (1518)
T ss_pred CccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhc
Confidence 999999999998543321110000000000 234568899997311 1111100
Q ss_pred ----------ccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhh------hcCC---------------CCeE
Q 015595 225 ----------FMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY------DTLT---------------ITQA 273 (404)
Q Consensus 225 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l------~~~~---------------~~k~ 273 (404)
.+.+.-.+.............+....-+......+....++ .... ..+.
T Consensus 384 l~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RA 463 (1518)
T COG4889 384 LGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRA 463 (1518)
T ss_pred ccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHH
Confidence 00111000000000000000000000011111111111111 1111 1257
Q ss_pred EEEecchhhHHHHHHHHhh-------------CCC--eEEEecCCCCHHHHHHHHH---HHhcCCCcEEEEcCccccCCC
Q 015595 274 VIFCNTKRKVDWLTEKMRG-------------YNF--TVSSMHGDMPQKERDAIMG---EFRSGTTRVLITTDVWARGLD 335 (404)
Q Consensus 274 lIf~~~~~~~~~l~~~l~~-------------~~~--~~~~~~~~~~~~~r~~~~~---~f~~~~~~vlv~t~~~~~Gid 335 (404)
|-||.++++...+++.|.. .++ .+.-+.|.|+..+|...+. .|...+.+||--...+++|+|
T Consensus 464 IaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVD 543 (1518)
T COG4889 464 IAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVD 543 (1518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCC
Confidence 8999999888777665532 133 4555668888888844433 234556778877789999999
Q ss_pred CCCCCEEEEccCCCChhhhhhhccccCCCC--Cc-eeEEEEe-------------ccCcHHHHHHHHHHHcccccc
Q 015595 336 VQQVSLVINYDLPNNRELYIHRIGRSGRFG--RK-GVAINFV-------------KNDDIKILRDIEQYYSTQIDE 395 (404)
Q Consensus 336 ~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g--~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 395 (404)
+|.++.||++++..|..+.+|.+||++|.. ++ |..++=+ ...+...+..+.+-|+.|.++
T Consensus 544 VPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnALRShD~a 619 (1518)
T COG4889 544 VPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKALRSHDEA 619 (1518)
T ss_pred ccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999999999973 22 4443311 123445666677777766553
No 133
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.85 E-value=3.7e-19 Score=164.74 Aligned_cols=316 Identities=14% Similarity=0.195 Sum_probs=211.8
Q ss_pred CCcHHHHHhhhhhh----cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
++-+||.-.++++. .+-+.|+...+|-|||..++..+......+.. ...|||||+.. .+.|.+++.+++. .+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~-gpHLVVvPsST-leNWlrEf~kwCP--sl 474 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNP-GPHLVVVPSST-LENWLREFAKWCP--SL 474 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCC-CCcEEEecchh-HHHHHHHHHHhCC--ce
Confidence 68999999888754 24467999999999997655544444444444 44899999876 5567888888764 46
Q ss_pred eEEEEEcCcchHHHHHHHh----cCCCeEEeChHHHH------HHHHccCCCcccceEEeccccccccCcHHHHHHHHhh
Q 015595 131 QAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVC------DMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRY 200 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~------~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~ 200 (404)
.+...+|......+++... .+++|+++|+.... .+++ ...++++|+||.|.+.+.. ......++..
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk---~~~~n~viyDEgHmLKN~~-SeRy~~LM~I 550 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLK---NQKFNYVIYDEGHMLKNRT-SERYKHLMSI 550 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHH---hccccEEEecchhhhhccc-hHHHHHhccc
Confidence 7777888776555544332 36899999986554 2223 3456899999999877665 2233333332
Q ss_pred CCCCceEEEEeeecch-HHHHHHHh-------------------------------------------------------
Q 015595 201 LPPDLQVVLISATLPH-EILEMTTK------------------------------------------------------- 224 (404)
Q Consensus 201 ~~~~~~~i~~SAT~~~-~~~~~~~~------------------------------------------------------- 224 (404)
+....+++|+||-. ++.+++.-
T Consensus 551 --~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~ 628 (941)
T KOG0389|consen 551 --NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRL 628 (941)
T ss_pred --cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 23346788898511 11111000
Q ss_pred ---c---cCCCe-EE-Eec-C----------------------CccccCC----------------ceEEEE--------
Q 015595 225 ---F---MTDPV-KI-LVK-R----------------------DELTLEG----------------IKQFFV-------- 249 (404)
Q Consensus 225 ---~---~~~~~-~~-~~~-~----------------------~~~~~~~----------------~~~~~~-------- 249 (404)
. +.... .+ .+. . ......+ .+.+|.
T Consensus 629 K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ma 708 (941)
T KOG0389|consen 629 KSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMA 708 (941)
T ss_pred HHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHH
Confidence 0 00000 00 000 0 0000000 000000
Q ss_pred ------------------------------------------Eec----CchhHHHHHHhhhhcC--CCCeEEEEecchh
Q 015595 250 ------------------------------------------AVE----REEWKFDTLCDLYDTL--TITQAVIFCNTKR 281 (404)
Q Consensus 250 ------------------------------------------~~~----~~~~~~~~l~~~l~~~--~~~k~lIf~~~~~ 281 (404)
.+. -...|...|..++... .+.++|||...-.
T Consensus 709 k~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTq 788 (941)
T KOG0389|consen 709 KRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQ 788 (941)
T ss_pred HHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHH
Confidence 000 0112566666666543 4579999999999
Q ss_pred hHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhcc
Q 015595 282 KVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT--TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIG 359 (404)
Q Consensus 282 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~G 359 (404)
..+-+.-.|..+++....+.|.+.-.+|+.++..|...+ ..+|++|.+.+-|||+..+++||++|...++-.=.|...
T Consensus 789 mLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAED 868 (941)
T KOG0389|consen 789 MLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAED 868 (941)
T ss_pred HHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHH
Confidence 999999999999999999999999999999999998654 356789999999999999999999999999999999999
Q ss_pred ccCCCCCce--eEEEEeccCcHH
Q 015595 360 RSGRFGRKG--VAINFVKNDDIK 380 (404)
Q Consensus 360 R~~R~g~~~--~~~~~~~~~~~~ 380 (404)
|+.|.||.. .++.+++.+.+.
T Consensus 869 RcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 869 RCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred HHHhhCCcceeEEEEEEecCcHH
Confidence 999999874 556677776554
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.1e-18 Score=165.98 Aligned_cols=316 Identities=16% Similarity=0.180 Sum_probs=210.9
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|. +|++.|.-.--.+..| -|..+.||-|||+++.+++.-....++. |-+++...-|+..-.+++..+...+|+
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~Gkg---VhVVTvNdYLA~RDae~mg~vy~fLGL 148 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTGKG---VIVSTVNEYLAERDAEEMGKVFNFLGL 148 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcCCc---eEEEecchhhhhhhHHHHHHHHHHhCC
Confidence 466 7888888766555555 5799999999999999888765566655 888888889999888999998889999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHH-HHHHcc--------CCCcccceEEeccccccccC------------
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK--------TLRTRAIKLLDESDEMLSRG------------ 189 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~l~~~--------~~~~~~~vIiDE~h~~~~~~------------ 189 (404)
++.+...+.....+.... .++|.++|...|- +++..+ ....+.+.|+||+|.++-..
T Consensus 149 svG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~ 226 (925)
T PRK12903 149 SVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQS 226 (925)
T ss_pred ceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCc
Confidence 999888776655444433 4899999986544 233321 23566788999999854110
Q ss_pred ----cHHHHHHHHhhCCC-------C------------------------------------------------------
Q 015595 190 ----FKDQIYDVYRYLPP-------D------------------------------------------------------ 204 (404)
Q Consensus 190 ----~~~~~~~~~~~~~~-------~------------------------------------------------------ 204 (404)
....+..+...+.. +
T Consensus 227 ~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~ 306 (925)
T PRK12903 227 NDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVR 306 (925)
T ss_pred cchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 11122222222210 0
Q ss_pred -------------------------------------------------------ceEEEEeeecchHHHHHHHhccCCC
Q 015595 205 -------------------------------------------------------LQVVLISATLPHEILEMTTKFMTDP 229 (404)
Q Consensus 205 -------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~~ 229 (404)
.++-+||+|...+..++..-+.. .
T Consensus 307 dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l-~ 385 (925)
T PRK12903 307 DGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM-R 385 (925)
T ss_pred CCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCC-C
Confidence 35666777765554444433322 2
Q ss_pred eEEEecCCccccCCceEEEEEecCchhHHHHHHhhhh-c-CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHH
Q 015595 230 VKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-T-LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQK 307 (404)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~-~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 307 (404)
+...+.... ................|...+.+-+. . ..+.++||.|.|++..+.+++.|.+.+++...+++....
T Consensus 386 Vv~IPTnkP--~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e- 462 (925)
T PRK12903 386 VNVVPTNKP--VIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNA- 462 (925)
T ss_pred EEECCCCCC--eeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchh-
Confidence 222111111 11111111112233345555554333 2 356789999999999999999999999999999887332
Q ss_pred HHHHHHHHHhcCC-CcEEEEcCccccCCCCCCCC--------EEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCc
Q 015595 308 ERDAIMGEFRSGT-TRVLITTDVWARGLDVQQVS--------LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDD 378 (404)
Q Consensus 308 ~r~~~~~~f~~~~-~~vlv~t~~~~~Gid~p~~~--------~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 378 (404)
.-.+++. +.|. ..|.|||.++++|.|+.--. +||....+.|..--.|..||+||.|.+|.+..|++-+|
T Consensus 463 ~EA~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 463 REAEIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred hHHHHHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 2223332 4564 47889999999999996322 78888889999999999999999999999999998765
Q ss_pred HH
Q 015595 379 IK 380 (404)
Q Consensus 379 ~~ 380 (404)
.-
T Consensus 541 ~L 542 (925)
T PRK12903 541 QL 542 (925)
T ss_pred HH
Confidence 53
No 135
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.82 E-value=1.4e-17 Score=167.89 Aligned_cols=109 Identities=12% Similarity=0.145 Sum_probs=83.6
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCC--eEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCC--CCEEEE
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNF--TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ--VSLVIN 344 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~--~~~vi~ 344 (404)
.+++++|+++|.+..+.+++.|+.... ....+.-+++...|..+++.|++++..||++|....+|+|+|+ +++||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457899999999999999999976422 1223333344456788999999998899999999999999996 478998
Q ss_pred ccCCCC------------------------------hhhhhhhccccCCCCCceeEEEEeccC
Q 015595 345 YDLPNN------------------------------RELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 345 ~~~p~s------------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
.++|.. ...+.|.+||+-|..++.-++++++..
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 887741 122469999999997775567777766
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.82 E-value=8.8e-18 Score=160.85 Aligned_cols=274 Identities=18% Similarity=0.191 Sum_probs=176.1
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|+ +|++.|.-..-.+ .+.-+..+.||.|||+++.+++.-....+.. |-|++++..|+.+-.+++..+...+|+
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~---VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTGKG---VHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcCCc---eEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 466 6888887665444 4457899999999999999888655445544 999999999999999999999999999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHH-HHHHcc--------CCCcccceEEeccccccccC------------
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK--------TLRTRAIKLLDESDEMLSRG------------ 189 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~l~~~--------~~~~~~~vIiDE~h~~~~~~------------ 189 (404)
++.++.++.+..++.... .++|.++|...|- +++..+ ....+.+.|+||+|.++-..
T Consensus 147 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~ 224 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSK 224 (870)
T ss_pred ceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCc
Confidence 999888877765544443 4899999985433 222211 23557888999999854110
Q ss_pred ----cHHHHHHHHhhCCC--------------------------------------------------------------
Q 015595 190 ----FKDQIYDVYRYLPP-------------------------------------------------------------- 203 (404)
Q Consensus 190 ----~~~~~~~~~~~~~~-------------------------------------------------------------- 203 (404)
.......+.+.+..
T Consensus 225 ~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~ 304 (870)
T CHL00122 225 TNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVR 304 (870)
T ss_pred cchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 00111111111100
Q ss_pred ------------------------------------------------------CceEEEEeeecchHHHHHHHhccCCC
Q 015595 204 ------------------------------------------------------DLQVVLISATLPHEILEMTTKFMTDP 229 (404)
Q Consensus 204 ------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~ 229 (404)
-.++.+||+|...+..++..-+.. .
T Consensus 305 dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l-~ 383 (870)
T CHL00122 305 NNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNL-E 383 (870)
T ss_pred CCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCC-C
Confidence 046778888876654444433322 2
Q ss_pred eEEEecCCccccCCceEEEEEecCchhHHHHHHh-hhhc-CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCH-
Q 015595 230 VKILVKRDELTLEGIKQFFVAVEREEWKFDTLCD-LYDT-LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ- 306 (404)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~-~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~- 306 (404)
+...+ ....................|...+.+ +.+. ..+.++||.|.|++..+.+++.|...+++...+++....
T Consensus 384 vv~IP--tnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~ 461 (870)
T CHL00122 384 VVCIP--THRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENV 461 (870)
T ss_pred EEECC--CCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccc
Confidence 22221 111111111111222333335554443 3332 356789999999999999999999999999999987422
Q ss_pred HHHHHHHHHHhcCC-CcEEEEcCccccCCCCC
Q 015595 307 KERDAIMGEFRSGT-TRVLITTDVWARGLDVQ 337 (404)
Q Consensus 307 ~~r~~~~~~f~~~~-~~vlv~t~~~~~Gid~p 337 (404)
..-.+++.+ .|. ..|.|||.++++|.|+.
T Consensus 462 ~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 462 RRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred hhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 333344433 454 46889999999999975
No 137
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.81 E-value=9.1e-17 Score=152.22 Aligned_cols=116 Identities=10% Similarity=0.056 Sum_probs=84.3
Q ss_pred HHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcC----CCcEEEEcCccccCC
Q 015595 259 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSG----TTRVLITTDVWARGL 334 (404)
Q Consensus 259 ~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~----~~~vlv~t~~~~~Gi 334 (404)
+.+..++.. .+++++|.+.|...++.+++.|...-.....+.|+.+ .+.+.+++|++. ...||++|..+.+|+
T Consensus 460 ~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 460 LSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 444455544 4568999999999999999999764222344455432 456688888864 789999999999999
Q ss_pred CC--------C--CCCEEEEccCCCCh-------------------------hhhhhhccccCCCCCc--eeEEEEeccC
Q 015595 335 DV--------Q--QVSLVINYDLPNNR-------------------------ELYIHRIGRSGRFGRK--GVAINFVKND 377 (404)
Q Consensus 335 d~--------p--~~~~vi~~~~p~s~-------------------------~~~~Q~~GR~~R~g~~--~~~~~~~~~~ 377 (404)
|+ | .++.||+..+|..+ ..+.|.+||.-|...+ .-++.++++.
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 99 3 47899998877322 2356999999998766 5566666765
No 138
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=1.5e-18 Score=135.22 Aligned_cols=118 Identities=43% Similarity=0.722 Sum_probs=109.3
Q ss_pred hHHHHHHhhhhcCC--CCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccC
Q 015595 256 WKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 333 (404)
Q Consensus 256 ~~~~~l~~~l~~~~--~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~G 333 (404)
.+...+..++.... ++++||||++...++.+++.|...+..+..+||+++..+|..+++.|+++...++++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 57777777777654 7899999999999999999999888899999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEE
Q 015595 334 LDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 373 (404)
Q Consensus 334 id~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~ 373 (404)
+|+|.+++|++++++++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887754
No 139
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=9.3e-18 Score=150.36 Aligned_cols=344 Identities=13% Similarity=0.110 Sum_probs=229.3
Q ss_pred CCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccc---cCe
Q 015595 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF---INI 130 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~---~~~ 130 (404)
.....+|.++++.+.+|++.++.-.+.+||++++...........+. ...+++.|+.++++...+-+.-.... ...
T Consensus 285 E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~ 363 (1034)
T KOG4150|consen 285 ESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA-TNSLLPSEMVEHLRNGSKGQVVHVEVIKARKS 363 (1034)
T ss_pred cchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc-cceecchhHHHHhhccCCceEEEEEehhhhhc
Confidence 35789999999999999999999999999999998877766554443 44889999999887755433211100 011
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc------CCCcccceEEeccccccccC---cHHHHHHHHhhC
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK------TLRTRAIKLLDESDEMLSRG---FKDQIYDVYRYL 201 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~------~~~~~~~vIiDE~h~~~~~~---~~~~~~~~~~~~ 201 (404)
.+.-.+++.....+......+.+++++.|+......-.+ .+-...++++||+|...... ....++.+.+.+
T Consensus 364 A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~ 443 (1034)
T KOG4150|consen 364 AYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLI 443 (1034)
T ss_pred ceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHH
Confidence 122223333333333344456889999998776543221 22233566799999754331 122233332222
Q ss_pred -----CCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCc--------hhHHHHHHhhhhc-
Q 015595 202 -----PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE--------EWKFDTLCDLYDT- 267 (404)
Q Consensus 202 -----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~l~~- 267 (404)
..+.+++-.+||.......+...+.-+......... ++..-.+.+.+.+.. ..+......++..
T Consensus 444 ~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG--SPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~ 521 (1034)
T KOG4150|consen 444 KGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG--SPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEM 521 (1034)
T ss_pred HHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC--CCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHH
Confidence 246789999999887766655444333333333332 334444555544321 1223333333322
Q ss_pred -CCCCeEEEEecchhhHHHHHHHHhhC----CC----eEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCC
Q 015595 268 -LTITQAVIFCNTKRKVDWLTEKMRGY----NF----TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 338 (404)
Q Consensus 268 -~~~~k~lIf~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~ 338 (404)
..+-++|-||++++.|+.+-...+.. +. .+..+.|+.+.++|+.+....--|+..-+|+|.+++-|+|+..
T Consensus 522 i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~ 601 (1034)
T KOG4150|consen 522 VQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGH 601 (1034)
T ss_pred HHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcccccc
Confidence 13568999999999998765554332 21 3567789999999999999888899999999999999999999
Q ss_pred CCEEEEccCCCChhhhhhhccccCCCCCceeEEEEecc--CcHHHHHHHHHHHccccccCCccc
Q 015595 339 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKN--DDIKILRDIEQYYSTQIDEMPMNV 400 (404)
Q Consensus 339 ~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
++.|++.+.|.|.+.+-|..||+||.+++...+.+... =|...+..-...+..+-.++-+++
T Consensus 602 LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~ 665 (1034)
T KOG4150|consen 602 LDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDS 665 (1034)
T ss_pred ceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEec
Confidence 99999999999999999999999999888665555544 466666777777777766655544
No 140
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=3.6e-16 Score=149.72 Aligned_cols=274 Identities=15% Similarity=0.147 Sum_probs=175.4
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|. .|++.|.-.--.+. ..-+..+.||.|||+++.+++.-....++. +-+++++.-|+..-.+++..+...+|+
T Consensus 82 lG~-r~ydVQliGgl~Lh--~G~IAEM~TGEGKTL~atlpaylnAL~Gkg---VhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLH--EGQIAEMKTGEGKTLVATLPSYLNALTGKG---VHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred hCC-CcchhHHHhhhhhc--CCceeeecCCCChhHHHHHHHHHHhhcCCC---eEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 466 78888876554444 446889999999999999888877767665 999999999999999999999999999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHH-----HHHHHc----cCCCcccceEEeccccccccC------------
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-----CDMIKR----KTLRTRAIKLLDESDEMLSRG------------ 189 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-----~~~l~~----~~~~~~~~vIiDE~h~~~~~~------------ 189 (404)
++.++.++....++. ..-.++|+++|...| .+.+.. .....+.+.||||+|.++=..
T Consensus 156 tvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~ 233 (939)
T PRK12902 156 SVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVE 233 (939)
T ss_pred eEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCCc
Confidence 999887776554443 334699999999765 443332 134567888999999854110
Q ss_pred ----cHHHHHHHHhhCCC--------------C-----------------------------------------------
Q 015595 190 ----FKDQIYDVYRYLPP--------------D----------------------------------------------- 204 (404)
Q Consensus 190 ----~~~~~~~~~~~~~~--------------~----------------------------------------------- 204 (404)
.......+.+.+.. +
T Consensus 234 ~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d 313 (939)
T PRK12902 234 RPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKD 313 (939)
T ss_pred cchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcC
Confidence 11111111111100 0
Q ss_pred -------------------------------------------------------------ceEEEEeeecchHHHHHHH
Q 015595 205 -------------------------------------------------------------LQVVLISATLPHEILEMTT 223 (404)
Q Consensus 205 -------------------------------------------------------------~~~i~~SAT~~~~~~~~~~ 223 (404)
.++-+||+|...+..++.+
T Consensus 314 ~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~ 393 (939)
T PRK12902 314 VNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEK 393 (939)
T ss_pred CeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHH
Confidence 3556666666544444333
Q ss_pred hccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhh-hc-CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEec
Q 015595 224 KFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY-DT-LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMH 301 (404)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~-~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~ 301 (404)
-+.. ++...+.... ................|...+.+-+ +. ..+.++||-+.|++..+.+++.|...+++...++
T Consensus 394 iY~l-~Vv~IPTnkP--~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLN 470 (939)
T PRK12902 394 TYKL-EVTVIPTNRP--RRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLN 470 (939)
T ss_pred HhCC-cEEEcCCCCC--eeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheee
Confidence 3222 2211111111 1111111112223334555554333 32 3567899999999999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHhcCCC-cEEEEcCccccCCCCC
Q 015595 302 GDM-PQKERDAIMGEFRSGTT-RVLITTDVWARGLDVQ 337 (404)
Q Consensus 302 ~~~-~~~~r~~~~~~f~~~~~-~vlv~t~~~~~Gid~p 337 (404)
+.. ..+.-.+++.+ .|.. .|.|||.++++|-|+.
T Consensus 471 Ak~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 471 AKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred CCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 873 32333344432 4544 6889999999999875
No 141
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.77 E-value=6.5e-17 Score=157.03 Aligned_cols=309 Identities=16% Similarity=0.169 Sum_probs=188.2
Q ss_pred CCCcHHHHHhhhhhhc----C--Cc--EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 54 EKPSAIQQRAVMPIIK----G--RD--VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~~----~--~~--~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
..-..||..++..+.. + .. ++--|.||+|||++-+- +++.+...+.+.|..+....++|..|+-+.+++-.
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDDKQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCCCCCceEEEEccccceeccchHHHHHhc
Confidence 3567899999887654 1 12 45689999999987665 44555566677789999999999999999998866
Q ss_pred cccCeeEEEEEcCcchHHHHH-------------------------------------------HHh--------cCCCe
Q 015595 126 DFINIQAHACVGGKSVGEDIR-------------------------------------------KLE--------HGVHV 154 (404)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~--------~~~~i 154 (404)
+..+-...++.|+....+... .+. -...+
T Consensus 486 ~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 486 NLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred CCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 544555555665543321110 000 01569
Q ss_pred EEeChHHHHHHHHcc-----CC----CcccceEEeccccccccCcHHHHHHHHhhC-CCCceEEEEeeecchHHHHHHHh
Q 015595 155 VSGTPGRVCDMIKRK-----TL----RTRAIKLLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTK 224 (404)
Q Consensus 155 iv~T~~~l~~~l~~~-----~~----~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~ 224 (404)
+|||++.++...... .+ -..+.+||||+|.+....+ ..+..+++.. .-..++++||||+|+.+...+..
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~~ 644 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATLPPALVKTLFR 644 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHH
Confidence 999999988765321 11 1246789999998654443 2333333321 13567999999999876654332
Q ss_pred -----------ccCC---CeEEEecC---Cccc--------------------------cCCceEE--EEEecCch----
Q 015595 225 -----------FMTD---PVKILVKR---DELT--------------------------LEGIKQF--FVAVEREE---- 255 (404)
Q Consensus 225 -----------~~~~---~~~~~~~~---~~~~--------------------------~~~~~~~--~~~~~~~~---- 255 (404)
..+. +..+.+.- .... ....... ...++...
T Consensus 645 Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~ 724 (1110)
T TIGR02562 645 AYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENE 724 (1110)
T ss_pred HHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccchh
Confidence 1222 22222211 0000 0001111 11122111
Q ss_pred hHHHHHHhhh--------hc------CCCCe---EEEEecchhhHHHHHHHHhhC------CCeEEEecCCCCHHHHHHH
Q 015595 256 WKFDTLCDLY--------DT------LTITQ---AVIFCNTKRKVDWLTEKMRGY------NFTVSSMHGDMPQKERDAI 312 (404)
Q Consensus 256 ~~~~~l~~~l--------~~------~~~~k---~lIf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~ 312 (404)
.....+...+ .. ..+++ .+|-+++++.+-.+++.|... .+.+..+|+......|..+
T Consensus 725 ~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~ 804 (1110)
T TIGR02562 725 STYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYI 804 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHH
Confidence 0111111111 11 11223 488888888887777777543 3457889999988888777
Q ss_pred HHHH----------------------hc----CCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCC
Q 015595 313 MGEF----------------------RS----GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 366 (404)
Q Consensus 313 ~~~f----------------------~~----~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~ 366 (404)
++.. .+ +...|+|+|++++.|+|+ +.+++| ..+.+..+.+|++||+.|.|.
T Consensus 805 E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 805 ERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred HHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 6553 11 356899999999999999 455554 458889999999999999865
Q ss_pred c
Q 015595 367 K 367 (404)
Q Consensus 367 ~ 367 (404)
.
T Consensus 882 ~ 882 (1110)
T TIGR02562 882 E 882 (1110)
T ss_pred C
Confidence 3
No 142
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.77 E-value=5.6e-18 Score=140.21 Aligned_cols=150 Identities=18% Similarity=0.145 Sum_probs=102.1
Q ss_pred CCcHHHHHhhhhhhc-------CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccc
Q 015595 55 KPSAIQQRAVMPIIK-------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~-------~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 127 (404)
.|+++|.+++..+.+ .+.+++.+|||+|||.+++..+..... +++|++|+.+|..|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 689999999998884 578999999999999988865555544 6999999999999999999665532
Q ss_pred cCeeEEE-----------EEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc-------------CCCcccceEEeccc
Q 015595 128 INIQAHA-----------CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-------------TLRTRAIKLLDESD 183 (404)
Q Consensus 128 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-------------~~~~~~~vIiDE~h 183 (404)
....... ..................+++++|.+.+....... .....+++|+||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 2111100 01111111222233456889999999998776531 23466899999999
Q ss_pred cccccCcHHHHHHHHhhCCCCceEEEEeeecc
Q 015595 184 EMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 215 (404)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 215 (404)
+...... ...++. .+...+|+|||||.
T Consensus 157 ~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred hcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 9765541 233333 35777999999985
No 143
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=2.9e-17 Score=146.90 Aligned_cols=278 Identities=18% Similarity=0.230 Sum_probs=178.1
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCC
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGV 152 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (404)
++-+|||.||||.- +++++...+. .+|.-|.+-|+.+.++.+++.+ +.+.+++|.......-. ...+
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~aks---GvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~--~~~a 260 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKSAKS---GVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN--GNPA 260 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhhhcc---ceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC--CCcc
Confidence 45699999999955 4444444444 7899999999999999988754 77777776543211100 1235
Q ss_pred CeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHH-HhhCCCCceEEEEeeecchHHHHHHHhc---cCC
Q 015595 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDV-YRYLPPDLQVVLISATLPHEILEMTTKF---MTD 228 (404)
Q Consensus 153 ~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~-~~~~~~~~~~i~~SAT~~~~~~~~~~~~---~~~ 228 (404)
+.+-||-|+.- .-..+++.|+||++.+.+.+-+..+-+. +........+. + .+....+.+.. .++
T Consensus 261 ~hvScTVEM~s------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLC---G--epsvldlV~~i~k~TGd 329 (700)
T KOG0953|consen 261 QHVSCTVEMVS------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLC---G--EPSVLDLVRKILKMTGD 329 (700)
T ss_pred cceEEEEEEee------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhcc---C--CchHHHHHHHHHhhcCC
Confidence 56666654432 2345688899999998887655444333 22211222211 1 12223333332 222
Q ss_pred CeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCe-EEEecCCCCHH
Q 015595 229 PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT-VSSMHGDMPQK 307 (404)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~ 307 (404)
.+.+. .|..+..- .-.+.+..-+.+..++.+|| |-|++..-.+...+.+.+.. +..++|.++++
T Consensus 330 ~vev~-------------~YeRl~pL-~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPe 394 (700)
T KOG0953|consen 330 DVEVR-------------EYERLSPL-VVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPE 394 (700)
T ss_pred eeEEE-------------eecccCcc-eehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCc
Confidence 22221 11111111 11223334444555555544 55677777888888887664 99999999999
Q ss_pred HHHHHHHHHhc--CCCcEEEEcCccccCCCCCCCCEEEEccCC---------CChhhhhhhccccCCCCCc---eeEEEE
Q 015595 308 ERDAIMGEFRS--GTTRVLITTDVWARGLDVQQVSLVINYDLP---------NNRELYIHRIGRSGRFGRK---GVAINF 373 (404)
Q Consensus 308 ~r~~~~~~f~~--~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p---------~s~~~~~Q~~GR~~R~g~~---~~~~~~ 373 (404)
.|..--..|++ ++.+|||||+++++|+|+ +++.||++++- .+..+..|..|||||.|.. |.+..+
T Consensus 395 Tr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl 473 (700)
T KOG0953|consen 395 TRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL 473 (700)
T ss_pred hhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe
Confidence 99998999986 788999999999999999 89999998863 5678899999999999743 777777
Q ss_pred eccCcHHHHHHHHHHHccccc
Q 015595 374 VKNDDIKILRDIEQYYSTQID 394 (404)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~ 394 (404)
..++ +..+.+.++++.+
T Consensus 474 ~~eD----L~~L~~~l~~p~e 490 (700)
T KOG0953|consen 474 HSED----LKLLKRILKRPVE 490 (700)
T ss_pred eHhh----HHHHHHHHhCCch
Confidence 6543 3344445554433
No 144
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.76 E-value=4.2e-17 Score=128.87 Aligned_cols=142 Identities=35% Similarity=0.506 Sum_probs=109.8
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhc
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (404)
+++++.+|||+|||.+++..+....... ...+++|++|+..++.|+.+.+...... +..+..+.+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 3689999999999999998888776652 3457999999999999999999887654 5677777776665555555566
Q ss_pred CCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeec
Q 015595 151 GVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 214 (404)
Q Consensus 151 ~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 214 (404)
..+++++|++.+.+.+... .....+++|+||+|.+....................+++++||||
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 7999999999998877664 355678999999999877765544323334445678899999996
No 145
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=3.6e-18 Score=119.52 Aligned_cols=78 Identities=47% Similarity=0.771 Sum_probs=75.2
Q ss_pred HHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCC
Q 015595 288 EKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 365 (404)
Q Consensus 288 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g 365 (404)
+.|+..++.+..+||+++..+|..+++.|++++..|||+|+++++|+|+|.+++|+++++|+|...|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
No 146
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.72 E-value=8.9e-15 Score=143.18 Aligned_cols=113 Identities=18% Similarity=0.319 Sum_probs=81.6
Q ss_pred HHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhC-CCeEEEecCCCCHHHHHHHHHHHh----cCCCcEEEEcCccccC
Q 015595 259 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFR----SGTTRVLITTDVWARG 333 (404)
Q Consensus 259 ~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vlv~t~~~~~G 333 (404)
+.+..++. .++.++|+++|.+..+.++..|... +.. ....|. ..+..+++.|+ .++..||++|..+.+|
T Consensus 525 ~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EG 598 (697)
T PRK11747 525 EFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEG 598 (697)
T ss_pred HHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEecccccc
Confidence 33444545 3445899999999999999998743 333 333443 24567776666 4678899999999999
Q ss_pred CCCCC--CCEEEEccCCCC-h-----------------------------hhhhhhccccCCCCCceeEEEEeccC
Q 015595 334 LDVQQ--VSLVINYDLPNN-R-----------------------------ELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 334 id~p~--~~~vi~~~~p~s-~-----------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
+|+|+ +++||+.++|.. + ..+.|.+||+-|...+.-+++++++.
T Consensus 599 VD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 599 LDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred ccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 99996 679999887732 1 12459999999987675567777775
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.72 E-value=3.6e-15 Score=147.03 Aligned_cols=116 Identities=15% Similarity=0.222 Sum_probs=85.5
Q ss_pred HHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCe-EEEecCCCCHHHHHHHHHHHhcCCC-cEEEEcCccccCCC
Q 015595 258 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT-VSSMHGDMPQKERDAIMGEFRSGTT-RVLITTDVWARGLD 335 (404)
Q Consensus 258 ~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~-~vlv~t~~~~~Gid 335 (404)
...+..+++..+ ++++||++|.+.++.+++.++..... ....+|..+ +.+.++.|..+.- .++|++..+++|+|
T Consensus 468 ~~~i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD 543 (654)
T COG1199 468 AAYLREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVD 543 (654)
T ss_pred HHHHHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCccc
Confidence 344445555544 48999999999999999999886542 344455443 3478888876655 89999999999999
Q ss_pred CCC--CCEEEEccCCC------------------------------ChhhhhhhccccCCCCCceeEEEEeccC
Q 015595 336 VQQ--VSLVINYDLPN------------------------------NRELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 336 ~p~--~~~vi~~~~p~------------------------------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
+|+ ++.||+.+.|. -...+.|.+||+-|...+.-++++++..
T Consensus 544 ~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 544 FPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 995 57889888773 2344679999999986666666666664
No 148
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.69 E-value=2.2e-16 Score=150.14 Aligned_cols=319 Identities=16% Similarity=0.162 Sum_probs=206.0
Q ss_pred CCCcHHHHHhhhhhhc----CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccC
Q 015595 54 EKPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~~----~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 129 (404)
.++.+||...+..+.+ +-+-|+...+|.|||...+..+.+.+....-....||+||+..|.+. ..++..+. ..
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW-~~Ef~kWa--PS 469 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNW-SSEFPKWA--PS 469 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCc-hhhccccc--cc
Confidence 3799999999887664 23569999999999988777777666554444458999999888764 45554432 23
Q ss_pred eeEEEEEcCcchHHH--HHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceE
Q 015595 130 IQAHACVGGKSVGED--IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQV 207 (404)
Q Consensus 130 ~~~~~~~~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 207 (404)
+..+...|....... .+....+.+|+++|++.+.+--....--.+.++||||-|++.+.. ..+...+...-...+.
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~y~~q~R 547 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTHYRAQRR 547 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchh--hHHHHHhhccccchhh
Confidence 444444443332211 122235689999999887641111122345788999999987654 2222222211123445
Q ss_pred EEEeeecchHH-HHH-----------------HHhccCCCe---------------------------------------
Q 015595 208 VLISATLPHEI-LEM-----------------TTKFMTDPV--------------------------------------- 230 (404)
Q Consensus 208 i~~SAT~~~~~-~~~-----------------~~~~~~~~~--------------------------------------- 230 (404)
+++|+|+..+- .++ ...|+..|+
T Consensus 548 LLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~ 627 (1157)
T KOG0386|consen 548 LLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQ 627 (1157)
T ss_pred hhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhh
Confidence 66777742110 000 000000000
Q ss_pred ------EEEecCC---------------------------------------------ccccCCceEEE----E--EecC
Q 015595 231 ------KILVKRD---------------------------------------------ELTLEGIKQFF----V--AVER 253 (404)
Q Consensus 231 ------~~~~~~~---------------------------------------------~~~~~~~~~~~----~--~~~~ 253 (404)
...+.+. .+...++...+ . .+-.
T Consensus 628 ~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~R 707 (1157)
T KOG0386|consen 628 ELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLVR 707 (1157)
T ss_pred hCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHHH
Confidence 0000000 00000000000 0 1112
Q ss_pred chhHHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCC---cEEEEcC
Q 015595 254 EEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTT---RVLITTD 328 (404)
Q Consensus 254 ~~~~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vlv~t~ 328 (404)
...|+..+..++.. ..+++++.||.-......+..+|.-.++....++|.+...+|...++.|+.... .+|++|.
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386|consen 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred hccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeec
Confidence 23466666666653 356899999999999999999999999999999999999999999999986543 4678999
Q ss_pred ccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccC
Q 015595 329 VWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 329 ~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
+.+-|+|+..+++||+||..|++....|+-.|+.|.|+..++-++.-..
T Consensus 788 agglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 788 AGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred ccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 9999999999999999999999999999999999999886666554443
No 149
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=4.6e-15 Score=144.06 Aligned_cols=307 Identities=13% Similarity=0.198 Sum_probs=207.1
Q ss_pred CCcHHHHHhhhhhhcC-CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHH-HHccccCeeE
Q 015595 55 KPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQA 132 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~-~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~-~~~~~~~~~~ 132 (404)
..++.|.+.++.+.+. +++++.+|+|||||.++-++++. .....++.++.|..+.+..++..+. ++....|..+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 4588999998887764 67899999999999998887776 3334579999999998877766554 4666678888
Q ss_pred EEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHH------HHHHHHhhCCCCce
Q 015595 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKD------QIYDVYRYLPPDLQ 206 (404)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~------~~~~~~~~~~~~~~ 206 (404)
..++|....... +....+++|+||+++..+ + ..+..++.|.||.|.+.+.. +. .++.+...+.++.+
T Consensus 1219 ~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q--~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ia~q~~k~ir 1291 (1674)
T KOG0951|consen 1219 VKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q--SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRYIASQLEKKIR 1291 (1674)
T ss_pred EecCCccccchH---HhhhcceEEechhHHHHH-h--hhhhcceEeeehhhhhcccC-CceEEEEeeHHHHHHHHHhhee
Confidence 888887766433 334589999999999766 3 67888999999999876321 11 14555556667889
Q ss_pred EEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCch--h--------HHHHHHhhhhcCCCCeEEEE
Q 015595 207 VVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE--W--------KFDTLCDLYDTLTITQAVIF 276 (404)
Q Consensus 207 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~l~~~l~~~~~~k~lIf 276 (404)
++++|..+.+. .+++ ... +..+.-......+....-..+.+.... . ....+.... ..+++.+||
T Consensus 1292 ~v~ls~~lana-~d~i--g~s-~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a--~~~k~~~vf 1365 (1674)
T KOG0951|consen 1292 VVALSSSLANA-RDLI--GAS-SSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA--GNRKPAIVF 1365 (1674)
T ss_pred EEEeehhhccc-hhhc--ccc-ccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh--cCCCCeEEE
Confidence 99999988664 3331 111 222222222222323333333332211 1 112222221 245689999
Q ss_pred ecchhhHHHHHHHHhhC----------------------CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCC
Q 015595 277 CNTKRKVDWLTEKMRGY----------------------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 334 (404)
Q Consensus 277 ~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gi 334 (404)
++++++|..++..|-.. .+.+.+=|.+++..+..-+-+.|..|.+.|+|.... ..|+
T Consensus 1366 ~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~ 1444 (1674)
T KOG0951|consen 1366 LPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGT 1444 (1674)
T ss_pred eccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccc
Confidence 99999998776554321 122333388899999888888999999999998877 6777
Q ss_pred CCCCCCEEEEcc-----------CCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHH
Q 015595 335 DVQQVSLVINYD-----------LPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILR 383 (404)
Q Consensus 335 d~p~~~~vi~~~-----------~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 383 (404)
-+.. +.|+..+ .+-+.+...|+.|++.| .|.|++++.......++
T Consensus 1445 ~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yyk 1500 (1674)
T KOG0951|consen 1445 KLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYK 1500 (1674)
T ss_pred cccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHH
Confidence 7743 3333322 24578889999999998 57899988877665433
No 150
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.66 E-value=7.9e-15 Score=134.78 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=98.3
Q ss_pred HHHHHHhhhh---cCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhc--CCCcEE-EEcCcc
Q 015595 257 KFDTLCDLYD---TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS--GTTRVL-ITTDVW 330 (404)
Q Consensus 257 ~~~~l~~~l~---~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vl-v~t~~~ 330 (404)
|...+...++ .....+++|...-.....-+...+.+.|.....++|.....+|+.+++.|.. |..+|+ ++-.+.
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAG 809 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAG 809 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccC
Confidence 4444444433 3345678888888888888899999999999999999999999999999973 445565 555888
Q ss_pred ccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEE--EeccCc
Q 015595 331 ARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN--FVKNDD 378 (404)
Q Consensus 331 ~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~--~~~~~~ 378 (404)
+.|+|+-+.+++|++|+-|++.--.|...|.-|+||...+++ |...+.
T Consensus 810 GVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gT 859 (901)
T KOG4439|consen 810 GVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGT 859 (901)
T ss_pred cceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCc
Confidence 999999999999999999999999999999999998865544 444443
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=5.1e-14 Score=139.01 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=61.3
Q ss_pred CCCCCCcHHHHHhhhhhh----cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 51 YGFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~----~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
+.|..+||.|.+.+..+. ++++.++.+|||+|||++.+.+++......+...+++|++.|.+-..|..+++++.
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 456566999998876644 57889999999999999999888887765554468999999999999999999884
No 152
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.65 E-value=6.5e-15 Score=135.37 Aligned_cols=123 Identities=15% Similarity=0.283 Sum_probs=105.9
Q ss_pred HHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCc-EEEEcCccccC
Q 015595 257 KFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTR-VLITTDVWARG 333 (404)
Q Consensus 257 ~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~-vlv~t~~~~~G 333 (404)
|+..|..++.. ..++++|+|+.--+....+.++|.-.++....+.|.....+|..++..|+...+- +|++|.+.+-|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 45555555543 3567999999999999999999999999999999999999999999999987664 46799999999
Q ss_pred CCCCCCCEEEEccCCCChhhhhhhccccCCCCCce--eEEEEeccCcH
Q 015595 334 LDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKNDDI 379 (404)
Q Consensus 334 id~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~--~~~~~~~~~~~ 379 (404)
||+..+++||+|+..|++..=.|.+.|+.|.|+.. .++.++....+
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccH
Confidence 99999999999999999999999999999999874 56666666644
No 153
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=2.1e-14 Score=139.27 Aligned_cols=121 Identities=19% Similarity=0.269 Sum_probs=93.4
Q ss_pred hHHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCC-CcEEEEcCcccc
Q 015595 256 WKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT-TRVLITTDVWAR 332 (404)
Q Consensus 256 ~~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~vlv~t~~~~~ 332 (404)
.|...+.+-+.. ..+.++||-+.|++..+.+++.|+..+++...+++.....+ .+++. +.|. -.|-|||.++++
T Consensus 612 eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~E-AeIVA--~AG~~GaVTIATNMAGR 688 (1112)
T PRK12901 612 EKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKE-AEIVA--EAGQPGTVTIATNMAGR 688 (1112)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhH-HHHHH--hcCCCCcEEEeccCcCC
Confidence 355555443332 35678999999999999999999999998888877643222 23332 2444 368899999999
Q ss_pred CCCCC--------CCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcH
Q 015595 333 GLDVQ--------QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 379 (404)
Q Consensus 333 Gid~p--------~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 379 (404)
|-||. +=-+||-...+.|..--.|..||+||.|.+|.+..|++-+|.
T Consensus 689 GTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 689 GTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99987 223788888899999999999999999999999999987654
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.64 E-value=6.4e-14 Score=134.83 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=98.5
Q ss_pred EEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHH---Hhc
Q 015595 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---LEH 150 (404)
Q Consensus 74 iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 150 (404)
+..+.+|||||.+|+-.+...+..++. +|+++|..+|..|+.+.++..+. +..+..++++.+..++... ..+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~---vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRG---ALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCe---EEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 344446999999999988888876654 99999999999999999988553 2457778887766555443 333
Q ss_pred -CCCeEEeChHHHHHHHHccCCCcccceEEeccccccccC------cHHHHHHHHhhCCCCceEEEEeeecchHHHHHHH
Q 015595 151 -GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRG------FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 223 (404)
Q Consensus 151 -~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~------~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 223 (404)
...|+|+|...++ ..+.+.++||+||-|.-...+ ..+.+...... ..+..+|+.|||++-+......
T Consensus 239 G~~~IViGtRSAvF-----aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvLgSaTPSles~~~~~ 312 (665)
T PRK14873 239 GQARVVVGTRSAVF-----APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLIGGHARTAEAQALVE 312 (665)
T ss_pred CCCcEEEEcceeEE-----eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEEECCCCCHHHHHHHh
Confidence 4789999965444 567888999999999754322 11222222222 3577899999999877555443
No 155
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.63 E-value=5e-14 Score=133.85 Aligned_cols=289 Identities=12% Similarity=0.106 Sum_probs=182.5
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcC
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (404)
-.+|.+|+|||||.+...|+...+.. +..++|++..+++|+.+....++..+- .+..... ..... .+ ....
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~--~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~--d~~~~--~i--~~~~ 121 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKN--PDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYL--DSDDY--II--DGRP 121 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccC--CCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeee--ccccc--cc--cccc
Confidence 35889999999998877777666532 344799999999999999999976431 1221111 11100 00 0113
Q ss_pred CCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHH-------HHHHHhhCCCCceEEEEeeecchHHHHHHHh
Q 015595 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQ-------IYDVYRYLPPDLQVVLISATLPHEILEMTTK 224 (404)
Q Consensus 152 ~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~-------~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~ 224 (404)
.+-+++..+.+.+.. ...+..++++|+||+-.....-+... +..+...+.....+|+|-|++++...+++..
T Consensus 122 ~~rLivqIdSL~R~~-~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~ 200 (824)
T PF02399_consen 122 YDRLIVQIDSLHRLD-GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLAS 200 (824)
T ss_pred cCeEEEEehhhhhcc-cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHH
Confidence 567777777776554 34567789999999988665533322 2233444566788999999999999999988
Q ss_pred ccCCCeEEEecCCccccCCceEEEEEecC-----------------------------------chhHHHHHHhhhhcC-
Q 015595 225 FMTDPVKILVKRDELTLEGIKQFFVAVER-----------------------------------EEWKFDTLCDLYDTL- 268 (404)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~l~~~l~~~- 268 (404)
..++.....+..+...+.-.......++. ..........++...
T Consensus 201 ~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~ 280 (824)
T PF02399_consen 201 CRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLN 280 (824)
T ss_pred hCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHh
Confidence 76554333333332221111100000000 001122233333332
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCC--EEEEcc
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVS--LVINYD 346 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~--~vi~~~ 346 (404)
.++++-||+++...++.+++..+.....+..+++..+..+ + +. -++.+|++-|+++..|+++-... .++.|=
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yv 354 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYV 354 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEeccchhhceEEEEEe
Confidence 2467889999999999999999988888998888765552 2 22 46789999999999999986443 344442
Q ss_pred CC----CChhhhhhhccccCCCCCceeEEEEeccC
Q 015595 347 LP----NNRELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 347 ~p----~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
-| .++.+..|++||+-... +.+.++.++..
T Consensus 355 k~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 355 KPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred cCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 22 45667899999995553 55666666543
No 156
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.63 E-value=1.7e-15 Score=107.26 Aligned_cols=81 Identities=46% Similarity=0.779 Sum_probs=76.9
Q ss_pred HHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCC
Q 015595 285 WLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF 364 (404)
Q Consensus 285 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 364 (404)
.+++.|+..++.+..+||+++..+|..+++.|+++...++++|+++++|+|+|.++.|+++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 015595 365 G 365 (404)
Q Consensus 365 g 365 (404)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 157
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.62 E-value=6.9e-14 Score=123.84 Aligned_cols=112 Identities=20% Similarity=0.297 Sum_probs=97.3
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCC-CcE-EEEcCccccCCCCCCCCEEEEcc
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT-TRV-LITTDVWARGLDVQQVSLVINYD 346 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~v-lv~t~~~~~Gid~p~~~~vi~~~ 346 (404)
..-|.|||...-...+.+.-.|.+.|+.|+.+.|+|++..|...++.|.+.. ..| |++-.+.+.-+|+..+++|++.|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 3457899999999999999999999999999999999999999999998764 344 45668899999999999999999
Q ss_pred CCCChhhhhhhccccCCCCCc--eeEEEEeccCcHH
Q 015595 347 LPNNRELYIHRIGRSGRFGRK--GVAINFVKNDDIK 380 (404)
Q Consensus 347 ~p~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~~~~ 380 (404)
+-|+++.--|...|..|.||. -.++.|+-+..+.
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE 752 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIE 752 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhccHH
Confidence 999999999999999999975 5677777776553
No 158
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.62 E-value=5.8e-14 Score=135.35 Aligned_cols=125 Identities=19% Similarity=0.290 Sum_probs=107.0
Q ss_pred hHHHHHHhhhhcC--CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcCccc
Q 015595 256 WKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT--TRVLITTDVWA 331 (404)
Q Consensus 256 ~~~~~l~~~l~~~--~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~t~~~~ 331 (404)
.|++.|.-+++.. .++++|||+.-.+..+.+...|.-+|+....++|..+-++|+...++|+.+. .+++++|...+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 3666666666643 5679999999999999999999999999999999999999999999998664 36778999999
Q ss_pred cCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCc--eeEEEEeccCcHH
Q 015595 332 RGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK--GVAINFVKNDDIK 380 (404)
Q Consensus 332 ~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~~~~ 380 (404)
.|||+.++++||+||..|++.-=.|.-.|..|.|+. -..|.++++..+.
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 999999999999999999998888888888888765 5677788876543
No 159
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.54 E-value=2.5e-13 Score=128.68 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=96.8
Q ss_pred HHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHhhC----------------------CCeEEEecCCCCHHHHHHH
Q 015595 257 KFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGY----------------------NFTVSSMHGDMPQKERDAI 312 (404)
Q Consensus 257 ~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~ 312 (404)
|+-.|.++++. .-++|.|||..|......+..+|.-. |.....+.|......|+..
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 44455555543 34679999999999998888887521 3457888999999999999
Q ss_pred HHHHhcCC----CcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEE
Q 015595 313 MGEFRSGT----TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 373 (404)
Q Consensus 313 ~~~f~~~~----~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~ 373 (404)
.+.|++-. ...||+|.+.+-|+|+-.++.||++|..|+++-=.|.+=|+.|+||...||++
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99998642 24789999999999999999999999999999999999999999998776653
No 160
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.52 E-value=2.7e-12 Score=129.18 Aligned_cols=294 Identities=16% Similarity=0.197 Sum_probs=167.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhc
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (404)
+..+|.-.+|||||++.+. +...+......+.+++||.++.|-.|+.+.+..+........ ...+..+....+.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhc
Confidence 4579999999999977655 444444447778899999999999999999998764433322 22233333444443
Q ss_pred C-CCeEEeChHHHHHHHHcc---CCCccc-ceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHH-HHh
Q 015595 151 G-VHVVSGTPGRVCDMIKRK---TLRTRA-IKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEM-TTK 224 (404)
Q Consensus 151 ~-~~iiv~T~~~l~~~l~~~---~~~~~~-~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~-~~~ 224 (404)
. ..|++||-++|....... ...... ++|+||||+.-.. ..-..+...++ +...+++|+||...-... ...
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G---~~~~~~~~~~~-~a~~~gFTGTPi~~~d~~tt~~ 424 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG---ELAKLLKKALK-KAIFIGFTGTPIFKEDKDTTKD 424 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc---HHHHHHHHHhc-cceEEEeeCCccccccccchhh
Confidence 3 589999999999887654 223333 4458999985433 33333344443 467899999984321111 123
Q ss_pred ccCCCeEEEecCCccccCCceEEEEEec----Cchh----------------------------------------H---
Q 015595 225 FMTDPVKILVKRDELTLEGIKQFFVAVE----REEW----------------------------------------K--- 257 (404)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----------------------------------------~--- 257 (404)
.++...+.+.......-..+...++... .... .
T Consensus 425 ~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~ 504 (962)
T COG0610 425 VFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRA 504 (962)
T ss_pred hhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHH
Confidence 3444444333322211111101111100 0000 0
Q ss_pred -HHHHHhhhh-cCCCCeEEEEecchhhHHHHHHHHhhCCCe----------------EEEe-------cCCCCHHHHHHH
Q 015595 258 -FDTLCDLYD-TLTITQAVIFCNTKRKVDWLTEKMRGYNFT----------------VSSM-------HGDMPQKERDAI 312 (404)
Q Consensus 258 -~~~l~~~l~-~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~----------------~~~~-------~~~~~~~~r~~~ 312 (404)
......+.+ ...+.++++.+.++.-+..+++........ .... |... ...+...
T Consensus 505 a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 583 (962)
T COG0610 505 AKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEKKDL 583 (962)
T ss_pred HHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHHhhh
Confidence 001111111 223457788888877444444443222100 0000 1111 1122233
Q ss_pred HHHH--hcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCC--C-Cc-eeEEEEec
Q 015595 313 MGEF--RSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF--G-RK-GVAINFVK 375 (404)
Q Consensus 313 ~~~f--~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~--g-~~-~~~~~~~~ 375 (404)
.++| .....++||.++++-+|+|-|.+++++. |-|.-.-.++|.+.|++|. + ++ |.++.+..
T Consensus 584 ~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 584 IKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhcCcCCCCCEEEEEccccccCCccccceEEe-ccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 3442 3567899999999999999999999875 4466677799999999997 4 23 55555544
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.50 E-value=3.4e-12 Score=131.14 Aligned_cols=320 Identities=17% Similarity=0.169 Sum_probs=204.6
Q ss_pred CCCcHHHHHhhhhhhc-----CCcEEEEcCCCCchhhHhHHHHHhhhhcCCC-ceeEEEEcccHHHHHHHHHHHHHHccc
Q 015595 54 EKPSAIQQRAVMPIIK-----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSR-EVQALILSPTRELATQTEKVILAIGDF 127 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~~-----~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~-~~~~lil~p~~~L~~q~~~~~~~~~~~ 127 (404)
..+++||.+.++.+.. +.+.++...+|.|||...+..+......... .+.++++||+ ++..+|..++.++...
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 3689999998877552 5667889999999998777666553333222 3469999995 6788888888877655
Q ss_pred cCeeEEEEEcCcch----HHHHHHHhcC-----CCeEEeChHHHHH---HHHccCCCcccceEEeccccccccCcHHHHH
Q 015595 128 INIQAHACVGGKSV----GEDIRKLEHG-----VHVVSGTPGRVCD---MIKRKTLRTRAIKLLDESDEMLSRGFKDQIY 195 (404)
Q Consensus 128 ~~~~~~~~~~~~~~----~~~~~~~~~~-----~~iiv~T~~~l~~---~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~ 195 (404)
... +...+|.... .......... .+++++|++.+.. ......-..++.+|+||+|.+.+... ....
T Consensus 416 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s-~~~~ 493 (866)
T COG0553 416 LRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQS-SEGK 493 (866)
T ss_pred ccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhh-HHHH
Confidence 432 4455554431 2233333222 7899999999988 44444455678899999999665541 1112
Q ss_pred HHHhhCCCCceEEEEeeecch-HHHHHH---H----------------hccCCCeEEEec--------------------
Q 015595 196 DVYRYLPPDLQVVLISATLPH-EILEMT---T----------------KFMTDPVKILVK-------------------- 235 (404)
Q Consensus 196 ~~~~~~~~~~~~i~~SAT~~~-~~~~~~---~----------------~~~~~~~~~~~~-------------------- 235 (404)
.+. .+.... .+.+|+||-. .+.++. . .++..+......
T Consensus 494 ~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 571 (866)
T COG0553 494 ALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSP 571 (866)
T ss_pred HHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Confidence 221 222122 2555666411 000000 0 000000000000
Q ss_pred ------CCc--c----------------------------c--------------cC---------C------------c
Q 015595 236 ------RDE--L----------------------------T--------------LE---------G------------I 244 (404)
Q Consensus 236 ------~~~--~----------------------------~--------------~~---------~------------~ 244 (404)
... . . .. . +
T Consensus 572 f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~ 651 (866)
T COG0553 572 FILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQI 651 (866)
T ss_pred HhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 000 0 0 00 0 0
Q ss_pred eEEEE-Eec---------------------------Cch-hHHHHHHhhh---hcCCCC--eEEEEecchhhHHHHHHHH
Q 015595 245 KQFFV-AVE---------------------------REE-WKFDTLCDLY---DTLTIT--QAVIFCNTKRKVDWLTEKM 290 (404)
Q Consensus 245 ~~~~~-~~~---------------------------~~~-~~~~~l~~~l---~~~~~~--k~lIf~~~~~~~~~l~~~l 290 (404)
..... ... ... .+...+.+++ ....+. +++||++.......+...+
T Consensus 652 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l 731 (866)
T COG0553 652 CNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYL 731 (866)
T ss_pred ccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHH
Confidence 00000 000 001 3566666666 222345 8999999999999999999
Q ss_pred hhCCCeEEEecCCCCHHHHHHHHHHHhcC--CCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCce
Q 015595 291 RGYNFTVSSMHGDMPQKERDAIMGEFRSG--TTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG 368 (404)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~ 368 (404)
+..++....++|.++...|...++.|.++ ...+++++.+.+.|+|+..+++|+++++.+++....|...|+.|.|+..
T Consensus 732 ~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~ 811 (866)
T COG0553 732 KALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKR 811 (866)
T ss_pred HhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcc
Confidence 99998899999999999999999999986 4456677889999999999999999999999999999999999999875
Q ss_pred --eEEEEeccCc
Q 015595 369 --VAINFVKNDD 378 (404)
Q Consensus 369 --~~~~~~~~~~ 378 (404)
.++-++..+.
T Consensus 812 ~v~v~r~i~~~t 823 (866)
T COG0553 812 PVKVYRLITRGT 823 (866)
T ss_pred eeEEEEeecCCc
Confidence 4555555554
No 162
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.48 E-value=6.4e-11 Score=107.31 Aligned_cols=288 Identities=16% Similarity=0.197 Sum_probs=196.1
Q ss_pred CCCceeEEEEcccHHHHHHHHHHHHHHcccc-C--------eeEE----------EEEcCcchHHHHHHHhc--------
Q 015595 98 SSREVQALILSPTRELATQTEKVILAIGDFI-N--------IQAH----------ACVGGKSVGEDIRKLEH-------- 150 (404)
Q Consensus 98 ~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~--------~~~~----------~~~~~~~~~~~~~~~~~-------- 150 (404)
+-..++||||+|++..|.++.+.+-++.... . .... .-.........+..+..
T Consensus 34 GftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Fr 113 (442)
T PF06862_consen 34 GFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFR 113 (442)
T ss_pred CCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEE
Confidence 3446789999999999999988887655331 0 0000 00000011111222111
Q ss_pred -----------------CCCeEEeChHHHHHHHHc--------cCCCcccceEEeccccccccCcH--HHHHHHHhhCCC
Q 015595 151 -----------------GVHVVSGTPGRVCDMIKR--------KTLRTRAIKLLDESDEMLSRGFK--DQIYDVYRYLPP 203 (404)
Q Consensus 151 -----------------~~~iiv~T~~~l~~~l~~--------~~~~~~~~vIiDE~h~~~~~~~~--~~~~~~~~~~~~ 203 (404)
.+||||++|=-|...+.. ..++.+.++|+|.+|.+....+. ..+...++..|+
T Consensus 114 lGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 114 LGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPK 193 (442)
T ss_pred EeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCC
Confidence 278999999888877764 13667789999999987654433 223333344442
Q ss_pred C---------------------ceEEEEeeecchHHHHHHHhccCCCeEE---EecCC-----ccccCCceEEEEEecCc
Q 015595 204 D---------------------LQVVLISATLPHEILEMTTKFMTDPVKI---LVKRD-----ELTLEGIKQFFVAVERE 254 (404)
Q Consensus 204 ~---------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~ 254 (404)
+ .|.|++|+...+++..+....+.+..-. ..... ......+.|.+..++..
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 2 5999999999999888887755442211 11111 12235667777765533
Q ss_pred h------hHHH-----HHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcE
Q 015595 255 E------WKFD-----TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRV 323 (404)
Q Consensus 255 ~------~~~~-----~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 323 (404)
. .+.+ .+..+.+....+.+|||++|.-.--.+.++|++.++....++..++..+-......|..|+..+
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 2 1221 2222332445578999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccc--cCCCCCCCCEEEEccCCCChhhhhhhccccCCCCC------ceeEEEEeccCcHHHHHHH
Q 015595 324 LITTDVWA--RGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR------KGVAINFVKNDDIKILRDI 385 (404)
Q Consensus 324 lv~t~~~~--~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~------~~~~~~~~~~~~~~~~~~~ 385 (404)
|+.|.-+. +-..+.++++||+|++|..+.-|...++-.+.... ...|.++++.-|...++++
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 99997554 56788899999999999999888877755544432 4789999998877655544
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.45 E-value=3.5e-13 Score=120.57 Aligned_cols=140 Identities=17% Similarity=0.111 Sum_probs=87.3
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCc--eeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE--VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~--~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (404)
.+..++..++|+|||..++..+.......... ..+||+||. ++..||..++.++......++....+..........
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSS
T ss_pred CCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccccc
Confidence 46789999999999988776655333322221 259999998 888999999999886545666666665522222222
Q ss_pred HhcCCCeEEeChHHHH--------HHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecch
Q 015595 148 LEHGVHVVSGTPGRVC--------DMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 216 (404)
Q Consensus 148 ~~~~~~iiv~T~~~l~--------~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 216 (404)
.....+++++|++.+. ..+.. ..++++|+||+|.+.+.. ......+ ..+. ...++++||||-.
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~~~~~~~l~~---~~~~~vIvDEaH~~k~~~-s~~~~~l-~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARKKKDKEDLKQ---IKWDRVIVDEAHRLKNKD-SKRYKAL-RKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TSTHTTHHHHT---SEEEEEEETTGGGGTTTT-SHHHHHH-HCCC-ECEEEEE-SS-SS
T ss_pred ccccceeeecccccccccccccccccccc---ccceeEEEeccccccccc-ccccccc-cccc-cceEEeecccccc
Confidence 3356899999999998 22222 347899999999985443 2233333 3344 6678999999843
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.44 E-value=1.3e-12 Score=98.33 Aligned_cols=133 Identities=16% Similarity=0.261 Sum_probs=79.5
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHh-hhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQ-TVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~-~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (404)
+|+-.++..++|+|||.-.+.-++. .+..+ .++|+|.||+.++.++.+.++.. .+.+.. .... ..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~---~rvLvL~PTRvva~em~~aL~~~----~~~~~t---~~~~----~~ 68 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRR---LRVLVLAPTRVVAEEMYEALKGL----PVRFHT---NARM----RT 68 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT-----EEEEESSHHHHHHHHHHTTTS----SEEEES---TTSS------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHcc---CeEEEecccHHHHHHHHHHHhcC----CcccCc---eeee----cc
Confidence 4566789999999999876665554 44443 36999999999999988887542 222211 1100 01
Q ss_pred HhcCCCeEEeChHHHHHHHHcc-CCCcccceEEeccccccccC--cHHHHHHHHhhCCCCceEEEEeeecchH
Q 015595 148 LEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATLPHE 217 (404)
Q Consensus 148 ~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 217 (404)
...+..|-++|+..+.+.+.+. ....++++|+||||-....+ ....+... ... ...++|+||||||..
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~-g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AES-GEAKVIFMTATPPGS 139 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHT-TS-EEEEEESS-TT-
T ss_pred ccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHh-hhc-cCeeEEEEeCCCCCC
Confidence 2244677889998888766553 57789999999999643322 11222222 221 346799999999865
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.36 E-value=4.5e-11 Score=114.81 Aligned_cols=311 Identities=19% Similarity=0.224 Sum_probs=186.1
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEE
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~ 134 (404)
.++..|.- -.+.-+..-+..+-||-|||+++.+++.-....+++ +.+++...-|+.--.++..++...+++++.+
T Consensus 80 ~~~dVQli--G~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkg---VhvVTvNdYLA~RDae~m~~l~~~LGlsvG~ 154 (822)
T COG0653 80 RHFDVQLL--GGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKG---VHVVTVNDYLARRDAEWMGPLYEFLGLSVGV 154 (822)
T ss_pred ChhhHHHh--hhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCC---cEEeeehHHhhhhCHHHHHHHHHHcCCceee
Confidence 45555543 344445567889999999999998888766566655 8888888889988888999988899999999
Q ss_pred EEcCcchHHHHHHHhcCCCeEEeChHHHH-----HHHH----ccCCCcccceEEecccccccc----------------C
Q 015595 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVC-----DMIK----RKTLRTRAIKLLDESDEMLSR----------------G 189 (404)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-----~~l~----~~~~~~~~~vIiDE~h~~~~~----------------~ 189 (404)
...+....++.... .++|.++|...|- ..+. ........+.|+||++.++-. .
T Consensus 155 ~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~ 232 (822)
T COG0653 155 ILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSE 232 (822)
T ss_pred ccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCch
Confidence 98888665554444 4899999975433 1111 112344677788888874311 1
Q ss_pred cHHHHHHHHhhCCC--------C---------------------------------------------------------
Q 015595 190 FKDQIYDVYRYLPP--------D--------------------------------------------------------- 204 (404)
Q Consensus 190 ~~~~~~~~~~~~~~--------~--------------------------------------------------------- 204 (404)
....+..+...+.. +
T Consensus 233 ~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~e 312 (822)
T COG0653 233 LYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGE 312 (822)
T ss_pred HHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCe
Confidence 12223333222211 0
Q ss_pred ----------------------------------------------------ceEEEEeeecchHHHHHHHhccCCCeEE
Q 015595 205 ----------------------------------------------------LQVVLISATLPHEILEMTTKFMTDPVKI 232 (404)
Q Consensus 205 ----------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 232 (404)
.++.+||+|...+..++..-+..+ +.+
T Consensus 313 v~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~-vv~ 391 (822)
T COG0653 313 VVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLD-VVV 391 (822)
T ss_pred EEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCc-eee
Confidence 122333333322222222111111 111
Q ss_pred EecCCccccCCceEEEEEecCchhHHHHHHhhhh--cCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHH
Q 015595 233 LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD--TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERD 310 (404)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~ 310 (404)
.+ ...........-........|...+..-+. ...+.++||-+.+++..+.+.+.|.+.+++...++.... .++
T Consensus 392 iP--Tnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~E 467 (822)
T COG0653 392 IP--TNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--ARE 467 (822)
T ss_pred cc--CCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHH
Confidence 11 111111111111111222335544443332 245779999999999999999999999999888887744 333
Q ss_pred HHHHHHhcCC-CcEEEEcCccccCCCCCCCC-----------EEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCc
Q 015595 311 AIMGEFRSGT-TRVLITTDVWARGLDVQQVS-----------LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDD 378 (404)
Q Consensus 311 ~~~~~f~~~~-~~vlv~t~~~~~Gid~p~~~-----------~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 378 (404)
.-+-.. .|. ..|-|||.++++|-|+.--. +||-...-.|-.-=-|.-||+||.|.+|.+-.+++-+|
T Consensus 468 A~Iia~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 468 AEIIAQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred HHHHhh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 333333 343 35789999999999986222 23323233344444599999999998888888777553
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.21 E-value=2.1e-10 Score=100.71 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=57.4
Q ss_pred CCCCCCcHHHHHhhhh----hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCC---ceeEEEEcccHHHHHHHHHHHHH
Q 015595 51 YGFEKPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILSPTRELATQTEKVILA 123 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~----~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~---~~~~lil~p~~~L~~q~~~~~~~ 123 (404)
+.| +|||.|.+.+.. +.+++++++.+|||+|||++++.+++..+...+. +.+++|.++|.++..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 345 579999996554 4557889999999999999999998766554332 23799999999998888777766
Q ss_pred H
Q 015595 124 I 124 (404)
Q Consensus 124 ~ 124 (404)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.21 E-value=2.1e-10 Score=100.71 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=57.4
Q ss_pred CCCCCCcHHHHHhhhh----hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCC---ceeEEEEcccHHHHHHHHHHHHH
Q 015595 51 YGFEKPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILSPTRELATQTEKVILA 123 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~----~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~---~~~~lil~p~~~L~~q~~~~~~~ 123 (404)
+.| +|||.|.+.+.. +.+++++++.+|||+|||++++.+++..+...+. +.+++|.++|.++..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 345 579999996554 4557889999999999999999998766554332 23799999999998888777766
Q ss_pred H
Q 015595 124 I 124 (404)
Q Consensus 124 ~ 124 (404)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 168
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.21 E-value=2.3e-08 Score=98.75 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=62.7
Q ss_pred CCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCC--Cce--------eEEEEeccCcHHHHHHHHHHH
Q 015595 320 TTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFG--RKG--------VAINFVKNDDIKILRDIEQYY 389 (404)
Q Consensus 320 ~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g--~~~--------~~~~~~~~~~~~~~~~~~~~~ 389 (404)
..+.+++.+++.+|||.|++-.++.++...|...-.|.+||+.|.. +.| ...++++++...++..++..+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5688999999999999999999999998999999999999999972 222 355677788899999999999
Q ss_pred cccc
Q 015595 390 STQI 393 (404)
Q Consensus 390 ~~~~ 393 (404)
+...
T Consensus 581 ~~~~ 584 (986)
T PRK15483 581 NSDS 584 (986)
T ss_pred Hhhc
Confidence 7754
No 169
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=4.5e-09 Score=94.63 Aligned_cols=330 Identities=16% Similarity=0.177 Sum_probs=198.6
Q ss_pred CCCCCcHHHHHhhhhhhcCCcEEE-EcCCCCch--hhHhHHHHHhhhhc----------------------------CCC
Q 015595 52 GFEKPSAIQQRAVMPIIKGRDVIA-QAQSGTGK--TSMIALTVCQTVDT----------------------------SSR 100 (404)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~iv-~a~tGsGK--T~~~~~~~~~~~~~----------------------------~~~ 100 (404)
.-.++++.|.+.+....+.++++. ....+.|+ +-+|.+.+++++.+ +-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 334799999999999888888764 33334455 34667777766621 112
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHHccccCe-eEE------------------------------EEEcCcch--------
Q 015595 101 EVQALILSPTRELATQTEKVILAIGDFINI-QAH------------------------------ACVGGKSV-------- 141 (404)
Q Consensus 101 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~-~~~------------------------------~~~~~~~~-------- 141 (404)
.++|||+||+++-|-.....+..+....+- +.. ++.|..+.
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 478999999999998888888776322110 000 00111100
Q ss_pred HHHHHHH---hcCCCeEEeChHHHHHHHHcc--------CCCcccceEEeccccccccCcHHHHH--HHHhhCCCC----
Q 015595 142 GEDIRKL---EHGVHVVSGTPGRVCDMIKRK--------TLRTRAIKLLDESDEMLSRGFKDQIY--DVYRYLPPD---- 204 (404)
Q Consensus 142 ~~~~~~~---~~~~~iiv~T~~~l~~~l~~~--------~~~~~~~vIiDE~h~~~~~~~~~~~~--~~~~~~~~~---- 204 (404)
......+ ....+|+||+|--+.-++.+. .+..+.+.|+|-+|.+....+...+. .-+...|.+
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCC
Confidence 0011111 124899999998887776531 35667788999999887666443322 223333322
Q ss_pred -----------------ceEEEEeeecchHHHHHHHhccCCCeEEEecC----C-ccc--cCCceEEEEEec------Cc
Q 015595 205 -----------------LQVVLISATLPHEILEMTTKFMTDPVKILVKR----D-ELT--LEGIKQFFVAVE------RE 254 (404)
Q Consensus 205 -----------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~-~~~--~~~~~~~~~~~~------~~ 254 (404)
.|.+++|+--.+....+...++.+-.-..... . ... ...+.|.+..+. ..
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 25555665555554444444433211111110 0 110 011122221111 11
Q ss_pred hhHHHHHH-hhhhc---CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc
Q 015595 255 EWKFDTLC-DLYDT---LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVW 330 (404)
Q Consensus 255 ~~~~~~l~-~~l~~---~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~ 330 (404)
+.++.... .++-. ....-+|||.++.-.--.+..++++..+....++.-.+..+-......|-.|...||+.|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 22232222 22221 122357999999999999999999988877777777777777778888999999999999765
Q ss_pred c--cCCCCCCCCEEEEccCCCChhhh---hhhccccCCCCC----ceeEEEEeccCcHHH
Q 015595 331 A--RGLDVQQVSLVINYDLPNNRELY---IHRIGRSGRFGR----KGVAINFVKNDDIKI 381 (404)
Q Consensus 331 ~--~Gid~p~~~~vi~~~~p~s~~~~---~Q~~GR~~R~g~----~~~~~~~~~~~~~~~ 381 (404)
. +-.++.++..||+|.+|..+--| +.+.+|..-.|+ .-.|.++++.-|.-.
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~ 672 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIR 672 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHH
Confidence 4 67899999999999999887655 556666544332 257888888766543
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.02 E-value=7.7e-09 Score=88.32 Aligned_cols=128 Identities=20% Similarity=0.322 Sum_probs=95.8
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|+ .|++.|.-+.-.+..|+ ++...||-|||+++.+++......++. |=+++.+.-|+..-.+++..+...+|+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~---V~vvT~NdyLA~RD~~~~~~~y~~LGl 147 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKG---VHVVTSNDYLAKRDAEEMRPFYEFLGL 147 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS----EEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCC---cEEEeccHHHhhccHHHHHHHHHHhhh
Confidence 466 89999998887776664 999999999999988887766666654 889999999999999999999999999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHH-HHHcc--------CCCcccceEEecccccc
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRK--------TLRTRAIKLLDESDEML 186 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~-~l~~~--------~~~~~~~vIiDE~h~~~ 186 (404)
++....++.....+..... ++|+++|...|.- ++... ......++||||+|.++
T Consensus 148 sv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999998887655444433 7899999987663 33321 14567899999999864
No 171
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.90 E-value=5.1e-07 Score=85.24 Aligned_cols=105 Identities=16% Similarity=0.276 Sum_probs=88.0
Q ss_pred CeEEEEecchhhHHHHHHHHhhCCC------------------eEEEecCCCCHHHHHHHHHHHhcC---CCcEEEEcCc
Q 015595 271 TQAVIFCNTKRKVDWLTEKMRGYNF------------------TVSSMHGDMPQKERDAIMGEFRSG---TTRVLITTDV 329 (404)
Q Consensus 271 ~k~lIf~~~~~~~~~l~~~l~~~~~------------------~~~~~~~~~~~~~r~~~~~~f~~~---~~~vlv~t~~ 329 (404)
.++|||..+......+.+.+.+..+ ....+.|..+..+|+..+++|++. .+-++++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 3689999999998888888876532 244678888999999999999753 2457889999
Q ss_pred cccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEec
Q 015595 330 WARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK 375 (404)
Q Consensus 330 ~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 375 (404)
..-|+|+-..+.+++++.-|++..-.|.+.|+-|.|+...|+++--
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 9999999999999999999999999999999999999877776543
No 172
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.88 E-value=1.3e-06 Score=81.71 Aligned_cols=109 Identities=12% Similarity=0.187 Sum_probs=73.9
Q ss_pred hhcCCCCeEEEEecchhhHHHHHHHHhhCCCe-------EEEecCCCCHHHHHHHHHHHh----cCCCcEEEEc--Cccc
Q 015595 265 YDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT-------VSSMHGDMPQKERDAIMGEFR----SGTTRVLITT--DVWA 331 (404)
Q Consensus 265 l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~-------~~~~~~~~~~~~r~~~~~~f~----~~~~~vlv~t--~~~~ 331 (404)
....+ +-+++|++|.+....+.+.....|+. -.++-...+ -+.+++.|. .|.-.+|+|. .-++
T Consensus 625 ~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlS 700 (821)
T KOG1133|consen 625 SNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLS 700 (821)
T ss_pred HhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccc
Confidence 33334 67999999999999998888766532 122222222 344555554 4555677665 6789
Q ss_pred cCCCCCC--CCEEEEccCCCC--------------------------------hhhhhhhccccCCCCCceeEEEEeccC
Q 015595 332 RGLDVQQ--VSLVINYDLPNN--------------------------------RELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 332 ~Gid~p~--~~~vi~~~~p~s--------------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
+|||+.+ ++.|+.+++|.. +...-|.+|||-|..++-.++++++..
T Consensus 701 EGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 701 EGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKR 780 (821)
T ss_pred cccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhh
Confidence 9999985 678999998732 011249999999998887777777753
No 173
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.86 E-value=2.9e-08 Score=85.00 Aligned_cols=166 Identities=20% Similarity=0.181 Sum_probs=108.9
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhc----------CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEE
Q 015595 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK----------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (404)
Q Consensus 38 ~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~----------~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (404)
+.+++.+.+ .|. +...|.+++-.... +..+++-..||.||--.....+++....+.+ +.+|+
T Consensus 26 ~~lp~~~~~----~g~--LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~--r~vwv 97 (303)
T PF13872_consen 26 LHLPEEVID----SGL--LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK--RAVWV 97 (303)
T ss_pred cCCCHHHHh----ccc--ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC--ceEEE
Confidence 345554443 233 78888887654331 2457999999999998888778777666543 69999
Q ss_pred cccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHH--------------ccCCCc
Q 015595 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK--------------RKTLRT 173 (404)
Q Consensus 108 ~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~--------------~~~~~~ 173 (404)
+.+..|..+..+.++.++.. .+.+..+..-... ....-+.+|+++|+..|...-. +..-+.
T Consensus 98 S~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~df 172 (303)
T PF13872_consen 98 SVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDF 172 (303)
T ss_pred ECChhhhhHHHHHHHHhCCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCC
Confidence 99999999999999987643 3333222211100 0011246799999987765432 212345
Q ss_pred ccceEEeccccccccCc--------HHHHHHHHhhCCCCceEEEEeeecchH
Q 015595 174 RAIKLLDESDEMLSRGF--------KDQIYDVYRYLPPDLQVVLISATLPHE 217 (404)
Q Consensus 174 ~~~vIiDE~h~~~~~~~--------~~~~~~~~~~~~~~~~~i~~SAT~~~~ 217 (404)
-.++||||||...+... ...+..+.+.+| +.+++.+|||.-.+
T Consensus 173 dgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 173 DGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred CceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 57889999999766542 234555666665 66799999997544
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.83 E-value=4e-07 Score=87.05 Aligned_cols=74 Identities=12% Similarity=0.222 Sum_probs=61.8
Q ss_pred CCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCC--CCce-----------eEEEEeccCcHHHHHHH
Q 015595 319 GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRF--GRKG-----------VAINFVKNDDIKILRDI 385 (404)
Q Consensus 319 ~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~--g~~~-----------~~~~~~~~~~~~~~~~~ 385 (404)
...+.+++..++-+|||=|++=.++-+....|..+=.|-+||+.|. ++.| ...+++..++.+++..+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3468899999999999999999999999999999999999999996 2222 34567788889999988
Q ss_pred HHHHccc
Q 015595 386 EQYYSTQ 392 (404)
Q Consensus 386 ~~~~~~~ 392 (404)
+..+...
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 8877653
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.78 E-value=2.8e-08 Score=85.45 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=51.7
Q ss_pred CCcHHHHHhhhhhhcCCc-EEEEcCCCCchhhHhHHHHHhhh-----hcCCCceeEEEEcccHHHHHHHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIKGRD-VIAQAQSGTGKTSMIALTVCQTV-----DTSSREVQALILSPTRELATQTEKVILA 123 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~-~iv~a~tGsGKT~~~~~~~~~~~-----~~~~~~~~~lil~p~~~L~~q~~~~~~~ 123 (404)
++++.|..++..++.... .+|.||+|+|||.+....+...+ .....+.++|+++|+.+-+++..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478999999999999888 89999999999976665555442 1244556799999999999998888877
No 176
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.78 E-value=2e-08 Score=80.89 Aligned_cols=112 Identities=20% Similarity=0.301 Sum_probs=77.1
Q ss_pred hhhhcCCCCeEEEEecchhhHHHHHHHHhhCCC--eEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC--ccccCCCCCC
Q 015595 263 DLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNF--TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD--VWARGLDVQQ 338 (404)
Q Consensus 263 ~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~--~~~~Gid~p~ 338 (404)
++++. .+++++||++|.+..+.+.+.++.... ....+.. +......+++.|++++..||+++. .+++|+|+|+
T Consensus 3 ~l~~~-~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISA-VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHC-CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhc-CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 34444 348899999999999999999987632 1122222 355778899999999999999998 9999999995
Q ss_pred --CCEEEEccCCCCh------------------------------hhhhhhccccCCCCCceeEEEEeccC
Q 015595 339 --VSLVINYDLPNNR------------------------------ELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 339 --~~~vi~~~~p~s~------------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
++.||+.++|... ....|.+||+-|..++--+++++++.
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 7789999887421 11349999999998777777777765
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.74 E-value=1e-08 Score=83.91 Aligned_cols=146 Identities=15% Similarity=0.191 Sum_probs=73.8
Q ss_pred CCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHH-------HHHHHHHcc
Q 015595 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT-------EKVILAIGD 126 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~-------~~~~~~~~~ 126 (404)
...+..|..++.++.+..-+++.||.|+|||+.++..+++.+.. +...+++++-|..+..+.. .+.+.-+..
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 35688999999999988889999999999999999988888876 4446788888876532111 000000000
Q ss_pred ccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCce
Q 015595 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQ 206 (404)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 206 (404)
...-....+.+. .....+.....|-+.....+ +...++ ..+||+|||+.+ ....+..++..+..+.+
T Consensus 82 p~~d~l~~~~~~----~~~~~~~~~~~Ie~~~~~~i----RGrt~~-~~~iIvDEaQN~----t~~~~k~ilTR~g~~sk 148 (205)
T PF02562_consen 82 PIYDALEELFGK----EKLEELIQNGKIEIEPLAFI----RGRTFD-NAFIIVDEAQNL----TPEELKMILTRIGEGSK 148 (205)
T ss_dssp HHHHHHTTTS-T----TCHHHHHHTTSEEEEEGGGG----TT--B--SEEEEE-SGGG------HHHHHHHHTTB-TT-E
T ss_pred HHHHHHHHHhCh----HhHHHHhhcCeEEEEehhhh----cCcccc-ceEEEEecccCC----CHHHHHHHHcccCCCcE
Confidence 000000000000 11112222344444444222 222232 478899999986 45677788888888888
Q ss_pred EEEEeee
Q 015595 207 VVLISAT 213 (404)
Q Consensus 207 ~i~~SAT 213 (404)
++++.-.
T Consensus 149 ii~~GD~ 155 (205)
T PF02562_consen 149 IIITGDP 155 (205)
T ss_dssp EEEEE--
T ss_pred EEEecCc
Confidence 7776655
No 178
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.67 E-value=6.9e-07 Score=73.87 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=86.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhc---CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEccc
Q 015595 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK---GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (404)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~---~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (404)
+|+....+.++.=.+.. ++ -+|+.|.++...+.+ +++.+.+.-+|.|||.+++..+...+..+. .-+.+++|
T Consensus 4 ~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVp- 78 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVP- 78 (229)
T ss_pred CCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcC-
Confidence 57777788888766543 44 689999998888775 578999999999999888776666655443 36778888
Q ss_pred HHHHHHHHHHHHHH-ccccCeeEEEE--EcCcchH----HHH----HHHhcCCCeEEeChHHHHHH
Q 015595 111 RELATQTEKVILAI-GDFINIQAHAC--VGGKSVG----EDI----RKLEHGVHVVSGTPGRVCDM 165 (404)
Q Consensus 111 ~~L~~q~~~~~~~~-~~~~~~~~~~~--~~~~~~~----~~~----~~~~~~~~iiv~T~~~l~~~ 165 (404)
++|..|+...++.. +...+-.+..+ .-..... ..+ ........|+++||+.++.+
T Consensus 79 k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 79 KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 67999999988773 33333333222 2222211 111 12234578999999988754
No 179
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.63 E-value=1.2e-07 Score=90.80 Aligned_cols=311 Identities=16% Similarity=0.221 Sum_probs=172.7
Q ss_pred HHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCc--eeEEEEcccHHHHHHHHHHHHH-HccccCeeEEE
Q 015595 58 AIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE--VQALILSPTRELATQTEKVILA-IGDFINIQAHA 134 (404)
Q Consensus 58 ~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~--~~~lil~p~~~L~~q~~~~~~~-~~~~~~~~~~~ 134 (404)
.+-..++..+..++-+++.+.||.|||..+.-.+++.+..+..+ .-+.+.-|++-.+....+.+.+ -+...+..+..
T Consensus 381 ~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy 460 (1282)
T KOG0921|consen 381 QYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGY 460 (1282)
T ss_pred HHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccc
Confidence 34455666677778889999999999999888888887665432 2344444666555555544433 11111111111
Q ss_pred EEcCcchHHHHHHHhc-CCCeEEeChHHHHHHHHccCCCcccceEEecccccccc-CcHHHHHHHHhhCCCCceEEEEee
Q 015595 135 CVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISA 212 (404)
Q Consensus 135 ~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SA 212 (404)
.. ........ .--|+.+|-+-+++.+... +.....+|+||+|...-. .+...+.+-+.-.-+...+++|||
T Consensus 461 -----~v-Rf~Sa~prpyg~i~fctvgvllr~~e~g-lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsa 533 (1282)
T KOG0921|consen 461 -----NV-RFDSATPRPYGSIMFCTVGVLLRMMENG-LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSA 533 (1282)
T ss_pred -----cc-cccccccccccceeeeccchhhhhhhhc-ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhc
Confidence 00 00111111 2357788888888887754 456678899999975432 222222222222234556666777
Q ss_pred ecchHHHH--------------------HHHhccCCCeEEEecCCc----------ccc--CCceEEEEE-ec-------
Q 015595 213 TLPHEILE--------------------MTTKFMTDPVKILVKRDE----------LTL--EGIKQFFVA-VE------- 252 (404)
Q Consensus 213 T~~~~~~~--------------------~~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~~~-~~------- 252 (404)
|+..+... ++...+..+......... ..+ ..-...+.. ++
T Consensus 534 tIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~ 613 (1282)
T KOG0921|consen 534 TIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNEST 613 (1282)
T ss_pred ccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchh
Confidence 65433211 111111111000000000 000 000000000 00
Q ss_pred --------CchhHHHHHHhhhh----cCCCCeEEEEecchhhHHHHHHHHhhC-------CCeEEEecCCCCHHHHHHHH
Q 015595 253 --------REEWKFDTLCDLYD----TLTITQAVIFCNTKRKVDWLTEKMRGY-------NFTVSSMHGDMPQKERDAIM 313 (404)
Q Consensus 253 --------~~~~~~~~l~~~l~----~~~~~k~lIf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~ 313 (404)
........+..++. ..-.+-+++|.+--...-.+...+..+ .+.+...|+......+.++.
T Consensus 614 ~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf 693 (1282)
T KOG0921|consen 614 RTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVF 693 (1282)
T ss_pred hhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhcc
Confidence 00011222222222 223356888888877777777666543 35677888888888888888
Q ss_pred HHHhcCCCcEEEEcCccccCCCCCCCCEEEEccC------------------CCChhhhhhhccccCCCCCceeEEEEec
Q 015595 314 GEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINFVK 375 (404)
Q Consensus 314 ~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~------------------p~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 375 (404)
+....|..++++.|.+.+..+.+-++..|+.... -.|.....|+.||++|. ++|.|+.++.
T Consensus 694 ~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 694 EPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred CcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 8888899999999999888888877666654331 24667789999999997 4677776655
Q ss_pred c
Q 015595 376 N 376 (404)
Q Consensus 376 ~ 376 (404)
.
T Consensus 773 ~ 773 (1282)
T KOG0921|consen 773 R 773 (1282)
T ss_pred H
Confidence 3
No 180
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.59 E-value=2.2e-06 Score=79.78 Aligned_cols=77 Identities=23% Similarity=0.216 Sum_probs=63.1
Q ss_pred HHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 47 GIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
.+...+..+++.-|..|+.+++...-.++++|+|+|||.+....+.+.+.. ...++|+++|+.--++|..+.+.+-+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~tg 478 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKTG 478 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhcC
Confidence 344457778999999999999999999999999999998877766665544 23469999999988999988887643
No 181
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.59 E-value=2.5e-07 Score=89.33 Aligned_cols=101 Identities=20% Similarity=0.196 Sum_probs=89.7
Q ss_pred eEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCC-cE-EEEcCccccCCCCCCCCEEEEccCCC
Q 015595 272 QAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTT-RV-LITTDVWARGLDVQQVSLVINYDLPN 349 (404)
Q Consensus 272 k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~-~v-lv~t~~~~~Gid~p~~~~vi~~~~p~ 349 (404)
+++||+.-..-+..+...+...++....+.|.++...|...+..|.++.. .+ +++..+...|+|+..+.+|+..++-+
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 89999999999999988888888899999999999999999999985543 34 45778999999999999999999999
Q ss_pred ChhhhhhhccccCCCCCceeEEE
Q 015595 350 NRELYIHRIGRSGRFGRKGVAIN 372 (404)
Q Consensus 350 s~~~~~Q~~GR~~R~g~~~~~~~ 372 (404)
|+...-|.+-|+.|.|+...+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999998865554
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.58 E-value=3.2e-07 Score=75.92 Aligned_cols=121 Identities=21% Similarity=0.283 Sum_probs=70.0
Q ss_pred CCcHHHHHhhhhhhcCC--cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeE
Q 015595 55 KPSAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~--~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~ 132 (404)
+|++-|.+++..++.++ -.++.|+.|+|||.+... +...+... +.++++++||...+....+... ...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~~-------~~a 70 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEAA--GKRVIGLAPTNKAAKELREKTG-------IEA 70 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHHT--T--EEEEESSHHHHHHHHHHHT-------S-E
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHhC--CCeEEEECCcHHHHHHHHHhhC-------cch
Confidence 47899999999997543 467899999999976443 44444443 3579999999987776555421 111
Q ss_pred EEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc------CCCcccceEEeccccccccCcHHHHHHHHhhCCC-Cc
Q 015595 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK------TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPP-DL 205 (404)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~------~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~-~~ 205 (404)
.|-..++...... .+...+++||||+-.+.. ..+..++...+. ..
T Consensus 71 ------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 71 ------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLARLLRLAKKSGA 122 (196)
T ss_dssp ------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHHHHHHS-T-T-
T ss_pred ------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHHHHHHHHhcCC
Confidence 1111111111100 145667999999998643 455566666655 56
Q ss_pred eEEEEeee
Q 015595 206 QVVLISAT 213 (404)
Q Consensus 206 ~~i~~SAT 213 (404)
++|++.-+
T Consensus 123 klilvGD~ 130 (196)
T PF13604_consen 123 KLILVGDP 130 (196)
T ss_dssp EEEEEE-T
T ss_pred EEEEECCc
Confidence 66666554
No 183
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.51 E-value=5.8e-06 Score=81.94 Aligned_cols=65 Identities=12% Similarity=-0.023 Sum_probs=52.5
Q ss_pred CCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecc
Q 015595 151 GVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 215 (404)
Q Consensus 151 ~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 215 (404)
...|++.||..+..-+-.. .+..+..+||||||++........+.++++.-.+..-+.++|+.|.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 4789999998887655444 4567788999999999877777777788877777888999999985
No 184
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.51 E-value=3.2e-08 Score=96.18 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=97.8
Q ss_pred CCcHHHHHhhhhhhc-CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEE
Q 015595 55 KPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~-~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~ 133 (404)
...|.|...+..+.. ..++++-+|||+|||.++..++...+... ++.++.++.|.++|...-.+...+.....|+++.
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~-p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~i 1005 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY-PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVI 1005 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC-CCccEEEEcCCchhhcccccchhhhcccCCceeE
Confidence 456667666655443 35789999999999999998877766544 3478999999999998888777765555588888
Q ss_pred EEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHc----cCCCcccceEEecccccccc
Q 015595 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR----KTLRTRAIKLLDESDEMLSR 188 (404)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~----~~~~~~~~vIiDE~h~~~~~ 188 (404)
-+.|+...+.. .-...+++|+||+++...... .-++.++++|+||.|.+...
T Consensus 1006 e~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1006 ELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred eccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 88887766522 123589999999998876653 24778889999999976554
No 185
>PRK10536 hypothetical protein; Provisional
Probab=98.47 E-value=7.5e-07 Score=75.15 Aligned_cols=143 Identities=14% Similarity=0.142 Sum_probs=82.8
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHH-----------HHHH
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT-----------QTEK 119 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~-----------q~~~ 119 (404)
.++...+..|...+..+.++..+++.|++|+|||+.+.....+.+..+. -.++++.=|..+..+ -..-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p 133 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQADEDLGFLPGDIAEKFAP 133 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCchhhhCcCCCCHHHHHHH
Confidence 4555678899999998888888899999999999998887776664432 345666656543211 1111
Q ss_pred HHHHHccccCeeEEEEEcCcchHHHHHHH--hcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHH
Q 015595 120 VILAIGDFINIQAHACVGGKSVGEDIRKL--EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDV 197 (404)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 197 (404)
.+..+...+.. +.+. ...... .....|-+... .++....+ ..+++|+||++.+. ...+..+
T Consensus 134 ~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l----~ymRGrtl-~~~~vIvDEaqn~~----~~~~k~~ 196 (262)
T PRK10536 134 YFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPF----AYMRGRTF-ENAVVILDEAQNVT----AAQMKMF 196 (262)
T ss_pred HHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecH----HHhcCCcc-cCCEEEEechhcCC----HHHHHHH
Confidence 11111111100 0011 111111 11233444443 33333333 34899999999863 3567777
Q ss_pred HhhCCCCceEEEEe
Q 015595 198 YRYLPPDLQVVLIS 211 (404)
Q Consensus 198 ~~~~~~~~~~i~~S 211 (404)
+..+..+.++|++.
T Consensus 197 ltR~g~~sk~v~~G 210 (262)
T PRK10536 197 LTRLGENVTVIVNG 210 (262)
T ss_pred HhhcCCCCEEEEeC
Confidence 77778777766543
No 186
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.45 E-value=0.00021 Score=65.25 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=61.6
Q ss_pred CeEEEEecchhhHHHHHHHHhhCCC-------eEEEecCCCCHHHHHHHHHHHh----cCCCcEE--EEcCccccCCCCC
Q 015595 271 TQAVIFCNTKRKVDWLTEKMRGYNF-------TVSSMHGDMPQKERDAIMGEFR----SGTTRVL--ITTDVWARGLDVQ 337 (404)
Q Consensus 271 ~k~lIf~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~~r~~~~~~f~----~~~~~vl--v~t~~~~~Gid~p 337 (404)
+-++.|+.+.-..+.+...-...|+ +...+ +.-+..+-...+..++ +|.-.|| |+-.-.++|+|+-
T Consensus 531 dG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fI-etpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~ 609 (755)
T KOG1131|consen 531 DGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFI-ETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFD 609 (755)
T ss_pred CceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEE-eCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccc
Confidence 4478888887777666555444332 22222 2222222233344333 5666666 4557889999997
Q ss_pred CCC--EEEEccCCCC------------------------------hhhhhhhccccCCCCCceeEEEEecc
Q 015595 338 QVS--LVINYDLPNN------------------------------RELYIHRIGRSGRFGRKGVAINFVKN 376 (404)
Q Consensus 338 ~~~--~vi~~~~p~s------------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~ 376 (404)
.-. .|+.++.|.- .....|-.||+.|..++--..++.+.
T Consensus 610 hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~K~dYg~mI~aDk 680 (755)
T KOG1131|consen 610 HHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRGKTDYGLMIFADK 680 (755)
T ss_pred cccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhccccceeeEeeeh
Confidence 655 8999888731 12234888999997665444444443
No 187
>PF13245 AAA_19: Part of AAA domain
Probab=98.32 E-value=2.2e-06 Score=58.56 Aligned_cols=52 Identities=25% Similarity=0.419 Sum_probs=39.8
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhc-CCCceeEEEEcccHHHHHHHHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVI 121 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~L~~q~~~~~ 121 (404)
++-++|.+|+|||||..++..+...+.. ...+.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4445669999999998877777766632 122567999999999999888777
No 188
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.26 E-value=1.3e-05 Score=77.25 Aligned_cols=139 Identities=18% Similarity=0.215 Sum_probs=84.2
Q ss_pred cHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC--CCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEE
Q 015595 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS--SREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (404)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~--~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~ 134 (404)
.++|+.++...+.++-.+|.|++|+|||.+....+....... ....++++++||-.-+..+.+.+......+...
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~--- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA--- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---
Confidence 379999999999998999999999999987554433322211 112469999999877777776665533221110
Q ss_pred EEcCcchHHHHHHHhcCCCeEEeChHHHHHHHH--------ccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCce
Q 015595 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK--------RKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQ 206 (404)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~--------~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 206 (404)
.. ......+-..|-.+++.... .......+++||||+-.+. ...+..+++.++...+
T Consensus 224 --------~~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~r 288 (586)
T TIGR01447 224 --------EA---LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNTK 288 (586)
T ss_pred --------hh---hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCCE
Confidence 00 00001111223222222111 1223457899999999753 3456667777788888
Q ss_pred EEEEeee
Q 015595 207 VVLISAT 213 (404)
Q Consensus 207 ~i~~SAT 213 (404)
+|++.-.
T Consensus 289 lIlvGD~ 295 (586)
T TIGR01447 289 LILLGDK 295 (586)
T ss_pred EEEECCh
Confidence 8877655
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.23 E-value=6.8e-06 Score=74.94 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=66.3
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcC
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (404)
-++|.|.+|||||++++..+... .....+.+++++++..+|.......+.... . ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~------------~~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNHPLRNKLREQLAKKY----------N------------PKL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEEecchHHHHHHHHHhhhc----------c------------cch
Confidence 36899999999998877655554 223334569999999999988877776532 0 000
Q ss_pred CCeEEeChHHHHHHHH--ccCCCcccceEEeccccccccC-------cHHHHHHHHhh
Q 015595 152 VHVVSGTPGRVCDMIK--RKTLRTRAIKLLDESDEMLSRG-------FKDQIYDVYRY 200 (404)
Q Consensus 152 ~~iiv~T~~~l~~~l~--~~~~~~~~~vIiDE~h~~~~~~-------~~~~~~~~~~~ 200 (404)
....+..+..+..... .......+++||||||++.... ....+..+++.
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1122233333332222 3356788999999999987731 23455555554
No 190
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.19 E-value=2.6e-05 Score=75.33 Aligned_cols=139 Identities=14% Similarity=0.181 Sum_probs=85.1
Q ss_pred cHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc-CCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEE
Q 015595 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (404)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~ 135 (404)
.++|+.++...+.++-.+|.|++|+|||.+....+...... .....+++++.||..-+..+.+.+.......+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~---- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT---- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc----
Confidence 58999999988888889999999999997755444332221 1223568899999888887777665433222110
Q ss_pred EcCcchHHHHHHHhcCCCeEEeChHHHHHHH--------HccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceE
Q 015595 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI--------KRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQV 207 (404)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l--------~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 207 (404)
.... .....-..|-.+++... ........+++|+||+-.+ -...+..+++.+++..++
T Consensus 230 -------~~~~---~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~~~rl 295 (615)
T PRK10875 230 -------DEQK---KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPPHARV 295 (615)
T ss_pred -------hhhh---hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhcccCCEE
Confidence 0000 00011112222222111 0112234589999999975 245566777788888888
Q ss_pred EEEeee
Q 015595 208 VLISAT 213 (404)
Q Consensus 208 i~~SAT 213 (404)
|++.-.
T Consensus 296 IlvGD~ 301 (615)
T PRK10875 296 IFLGDR 301 (615)
T ss_pred EEecch
Confidence 888766
No 191
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.17 E-value=3.3e-05 Score=76.69 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=79.2
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.++ .+++.|++++..+..++-.++.|++|+|||.+.-. ++..+........+++++||-.-+..+.+.. +.
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~-i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~-------g~ 390 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRA-IIELAEELGGLLPVGLAAPTGRAAKRLGEVT-------GL 390 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHH-HHHHHHHcCCCceEEEEeCchHHHHHHHHhc-------CC
Confidence 454 79999999999998888899999999999976543 3444433322246888999977665433321 11
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEE
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 210 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 210 (404)
.. ... .+.+....+ ..... ........+++|+||++.+.. ..+..+++.++...++|++
T Consensus 391 ~a------~Ti---h~lL~~~~~-------~~~~~-~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~~~rlilv 449 (720)
T TIGR01448 391 TA------STI---HRLLGYGPD-------TFRHN-HLEDPIDCDLLIVDESSMMDT----WLALSLLAALPDHARLLLV 449 (720)
T ss_pred cc------ccH---HHHhhccCC-------ccchh-hhhccccCCEEEEeccccCCH----HHHHHHHHhCCCCCEEEEE
Confidence 00 000 001100000 00000 011124568999999998743 3455666677777888877
Q ss_pred eee
Q 015595 211 SAT 213 (404)
Q Consensus 211 SAT 213 (404)
.-+
T Consensus 450 GD~ 452 (720)
T TIGR01448 450 GDT 452 (720)
T ss_pred Ccc
Confidence 655
No 192
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.11 E-value=1.6e-05 Score=73.69 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=54.3
Q ss_pred CCcHHHHHhhhhhhcCC-cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~-~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~ 122 (404)
.+.+-|..++......+ -.++.||+|+|||.+....+.+.+..++ ++|++.||..-++.+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k---~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKK---RVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCC---eEEEEcCchHHHHHHHHHhc
Confidence 57889999998877774 4689999999999998888888777664 49999999998888888643
No 193
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.10 E-value=1.4e-05 Score=73.88 Aligned_cols=139 Identities=14% Similarity=0.209 Sum_probs=79.7
Q ss_pred EEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc--cccCeeEEEEEcCcchH-H---HHHHH
Q 015595 75 AQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG--DFINIQAHACVGGKSVG-E---DIRKL 148 (404)
Q Consensus 75 v~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~-~---~~~~~ 148 (404)
..++||||||++.+..++++..++-+ ..|+.|....+.+.....+..-. +++-... ...++.... . .....
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~kylf~e~-i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKYLFSEN-ININDENIEIKKVNNFSEH 78 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhHhhhhh-hhcCCceeeeeeecccCcc
Confidence 46899999999998889988877644 67888888877776554432100 0000000 000111000 0 00012
Q ss_pred hcCCCeEEeChHHHHHHHHcc--------CCCcccceE-EeccccccccC-------------cHHHHHHHHhhCCCCce
Q 015595 149 EHGVHVVSGTPGRVCDMIKRK--------TLRTRAIKL-LDESDEMLSRG-------------FKDQIYDVYRYLPPDLQ 206 (404)
Q Consensus 149 ~~~~~iiv~T~~~l~~~l~~~--------~~~~~~~vI-iDE~h~~~~~~-------------~~~~~~~~~~~~~~~~~ 206 (404)
.++..|..+|.+.+...+-+. .+....+|. =||+|++.... +...+...++. .++.-
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~-nkd~~ 157 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ-NKDNL 157 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc-CCCce
Confidence 345789999999988776543 244556665 49999975331 22333333333 23445
Q ss_pred EEEEeeecchH
Q 015595 207 VVLISATLPHE 217 (404)
Q Consensus 207 ~i~~SAT~~~~ 217 (404)
++..|||.+.+
T Consensus 158 ~lef~at~~k~ 168 (812)
T COG3421 158 LLEFSATIPKE 168 (812)
T ss_pred eehhhhcCCcc
Confidence 77789998743
No 194
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.04 E-value=3.6e-05 Score=74.45 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=51.7
Q ss_pred CCcHHHHHhhhhhhc----CCcEEEEcCCCCchhhHhHHHHHhhhhcC--------------------------------
Q 015595 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTS-------------------------------- 98 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~~~~iv~a~tGsGKT~~~~~~~~~~~~~~-------------------------------- 98 (404)
+|++.|...+..+++ ..+.++..|||+|||+..+-..+.+....
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 799999998887765 46789999999999987665544433100
Q ss_pred -C------CceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 99 -S------REVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 99 -~------~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
. ..++++|-.-|.+-..|..+++++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0 13567777778787888888887744
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.95 E-value=2.7e-05 Score=70.11 Aligned_cols=120 Identities=16% Similarity=0.155 Sum_probs=77.1
Q ss_pred CcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC-CCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEE
Q 015595 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (404)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~ 134 (404)
+++-|..++.. ..+.++|.|++|||||.+.+.-+...+... -...++|+++.|++.+.++...+..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~--- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQE--- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC---
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccc---
Confidence 57889999987 677899999999999999888777777655 445679999999999999999998754222100
Q ss_pred EEcCcchHHHHHHHhcCCCeEEeChHHHHHHH-Hcc---CCCcccceEEeccc
Q 015595 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI-KRK---TLRTRAIKLLDESD 183 (404)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l-~~~---~~~~~~~vIiDE~h 183 (404)
................+.|+|...+...+ ... ..-..++-++|+..
T Consensus 76 ---~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 ---SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ---CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ---ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00000111122234678888887766433 322 11233566777766
No 196
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.94 E-value=7.5e-05 Score=57.91 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=55.4
Q ss_pred EecCCCCHHHHHHHHHHHhcCC-CcEEEEcCccccCCCCCC--CCEEEEccCCCC-------------------------
Q 015595 299 SMHGDMPQKERDAIMGEFRSGT-TRVLITTDVWARGLDVQQ--VSLVINYDLPNN------------------------- 350 (404)
Q Consensus 299 ~~~~~~~~~~r~~~~~~f~~~~-~~vlv~t~~~~~Gid~p~--~~~vi~~~~p~s------------------------- 350 (404)
++.-+.+..+...+++.|++.. ..||+++..+++|+|+|+ ++.||+.+.|..
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 3333444555788899998654 379999988999999996 568888887631
Q ss_pred ------hhhhhhhccccCCCCCceeEEEEecc
Q 015595 351 ------RELYIHRIGRSGRFGRKGVAINFVKN 376 (404)
Q Consensus 351 ------~~~~~Q~~GR~~R~g~~~~~~~~~~~ 376 (404)
.....|.+||+-|..++--++++++.
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 12245999999998766555655554
No 197
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.94 E-value=5e-05 Score=59.00 Aligned_cols=95 Identities=13% Similarity=0.190 Sum_probs=61.1
Q ss_pred hHHHHHHHHhhCCC---eEEEecCCCCHHHHHHHHHHHhcCCC---cEEEEcCc--cccCCCCCC--CCEEEEccCCCC-
Q 015595 282 KVDWLTEKMRGYNF---TVSSMHGDMPQKERDAIMGEFRSGTT---RVLITTDV--WARGLDVQQ--VSLVINYDLPNN- 350 (404)
Q Consensus 282 ~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~---~vlv~t~~--~~~Gid~p~--~~~vi~~~~p~s- 350 (404)
..+.+++.+++.+. ....+.-..+..+..++++.|++... .||+++.. +++|+|+|+ ++.||+.+.|..
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 34555666655432 12222222223344678888886543 68888876 999999996 578998887731
Q ss_pred ------------------------------hhhhhhhccccCCCCCceeEEEEecc
Q 015595 351 ------------------------------RELYIHRIGRSGRFGRKGVAINFVKN 376 (404)
Q Consensus 351 ------------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~ 376 (404)
.....|.+||+-|..++--+++++++
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 12245999999998777556666654
No 198
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.87 E-value=5.9e-05 Score=64.42 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=39.5
Q ss_pred CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecc---hHHHHHHHhccC
Q 015595 170 TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP---HEILEMTTKFMT 227 (404)
Q Consensus 170 ~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~---~~~~~~~~~~~~ 227 (404)
.-+.+.++|+||||.+.... ...+.+.++..+...++++++.-++ +.+...+.++..
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrF 185 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRF 185 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcC
Confidence 35566899999999886665 5577777888777888888877653 344444444433
No 199
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.86 E-value=6.8e-05 Score=65.64 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=51.3
Q ss_pred CCCCCCcHHHHHhhhhhhcC--CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHH
Q 015595 51 YGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~--~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~ 114 (404)
+|+...+..|.-++..++.- .-+.+.++.|||||+.++.+.++.....+...++++.=|+..+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 57766777888888888764 34678999999999999988888887777777888888876544
No 200
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.86 E-value=8.2e-05 Score=72.74 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=86.6
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCc-EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHH
Q 015595 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRD-VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (404)
Q Consensus 38 ~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~-~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q 116 (404)
..+.+.+.+. .+..++.-|++|+...+..++ .+|.|=+|+|||.+....+.-.+..+++ +|+.+=|..-++.
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkk---VLLtsyThsAVDN 728 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKK---VLLTSYTHSAVDN 728 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCe---EEEEehhhHHHHH
Confidence 3445555443 234789999999988877654 6899999999998887766666555544 9988888887777
Q ss_pred HHHHHHHHccccCeeEEEEEcCcchHHHHH-----------------HHhcCCCeEEeChHHHHHHHHccCCCcccceEE
Q 015595 117 TEKVILAIGDFINIQAHACVGGKSVGEDIR-----------------KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (404)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIi 179 (404)
..-.++.+. +.+..+..+....+..+ .+.+...|+.+|.--+.+.+.. ...+|++|+
T Consensus 729 ILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~--~R~FD~cIi 802 (1100)
T KOG1805|consen 729 ILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFV--NRQFDYCII 802 (1100)
T ss_pred HHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhh--ccccCEEEE
Confidence 666665543 33333333333322222 2334466777665333332222 234699999
Q ss_pred eccccccc
Q 015595 180 DESDEMLS 187 (404)
Q Consensus 180 DE~h~~~~ 187 (404)
|||-.+..
T Consensus 803 DEASQI~l 810 (1100)
T KOG1805|consen 803 DEASQILL 810 (1100)
T ss_pred cccccccc
Confidence 99998653
No 201
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.84 E-value=6.2e-05 Score=58.05 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhh
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQT 94 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~ 94 (404)
+++.+++.|++|+|||.+....+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34568999999999997766555443
No 202
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.82 E-value=4.6e-05 Score=72.70 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=99.7
Q ss_pred CCcHHHHHhhhhhhc--------CC--cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIK--------GR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~--------~~--~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
.+...|.+++-.... |. .+++-...|.||-...+-.+.+...++.+ ++||+.-+..|--+..+.++.+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK--rAlW~SVSsDLKfDAERDL~Di 341 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK--RALWFSVSSDLKFDAERDLRDI 341 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc--eeEEEEeccccccchhhchhhc
Confidence 467777777654332 21 36777778888876666666766666654 7999999999988888888876
Q ss_pred ccccCeeEEEEEcCcchHHHHH---HHhcCCCeEEeChHH---------------HHHHHHccCCCcccceEEecccccc
Q 015595 125 GDFINIQAHACVGGKSVGEDIR---KLEHGVHVVSGTPGR---------------VCDMIKRKTLRTRAIKLLDESDEML 186 (404)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~T~~~---------------l~~~l~~~~~~~~~~vIiDE~h~~~ 186 (404)
+ ..++.+..+..=+. ..+. +-.-+-.++++|+.. |..++.+..-++-++|||||||...
T Consensus 342 g-A~~I~V~alnK~KY--akIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAK 418 (1300)
T KOG1513|consen 342 G-ATGIAVHALNKFKY--AKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAK 418 (1300)
T ss_pred C-CCCccceehhhccc--ccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhc
Confidence 5 33344433321110 0000 011135688888744 4455666566777899999999865
Q ss_pred cc---------CcHHHHHHHHhhCCCCceEEEEeee
Q 015595 187 SR---------GFKDQIYDVYRYLPPDLQVVLISAT 213 (404)
Q Consensus 187 ~~---------~~~~~~~~~~~~~~~~~~~i~~SAT 213 (404)
+- ..+..+..+.+.+| +.+++.-|||
T Consensus 419 NL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASAT 453 (1300)
T KOG1513|consen 419 NLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASAT 453 (1300)
T ss_pred ccccccCCCcCcccHhHHHHHHhCC-CceEEEeecc
Confidence 41 25567778877776 6789999999
No 203
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.82 E-value=0.0001 Score=60.81 Aligned_cols=132 Identities=14% Similarity=0.179 Sum_probs=73.6
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCC
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGV 152 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (404)
+++.||||+|||.+..-.+...... +.++.+++--.- .....++++.+....++.+.......+..
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~-R~ga~eQL~~~a~~l~vp~~~~~~~~~~~---------- 69 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTY-RIGAVEQLKTYAEILGVPFYVARTESDPA---------- 69 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTS-STHHHHHHHHHHHHHTEEEEESSTTSCHH----------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCC-CccHHHHHHHHHHHhccccchhhcchhhH----------
Confidence 5789999999998887766655544 223555543211 12233455555555555543322111110
Q ss_pred CeEEeChHHHHHHHHccCCCcccceEEecccccccc-CcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhc
Q 015595 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 225 (404)
Q Consensus 153 ~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 225 (404)
+.+.+.++....+..++|++|-+-+.... .....+..+.+...+..-.+.+|||...+.......+
T Consensus 70 -------~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 70 -------EIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp -------HHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred -------HHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 11223333333445689999998765432 3345666666666666678999999877655544443
No 204
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00062 Score=62.14 Aligned_cols=129 Identities=20% Similarity=0.179 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcC-CCceeEEEEc-cc-HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILS-PT-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~-p~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (404)
+.+++.||||+|||.++.-.+....... ..+.++.+++ .+ +.-+. ++++.+....++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKA------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEe-------------
Confidence 3578899999999988776554433221 2233444444 33 22222 2344444444443322
Q ss_pred HhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccC-cHHHHHHHHhhCCCC-ceEEEEeeecchH-HHHHHHh
Q 015595 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRG-FKDQIYDVYRYLPPD-LQVVLISATLPHE-ILEMTTK 224 (404)
Q Consensus 148 ~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~~~-~~~i~~SAT~~~~-~~~~~~~ 224 (404)
+.+++.+...+.. ....++|++|++.+..... ....+..++...... -..+.+|||.... +.+.+..
T Consensus 239 --------~~~~~~l~~~L~~--~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~ 308 (388)
T PRK12723 239 --------IESFKDLKEEITQ--SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQ 308 (388)
T ss_pred --------eCcHHHHHHHHHH--hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 1133344444433 3567999999999875332 223445555544333 4678999998643 3333444
Q ss_pred c
Q 015595 225 F 225 (404)
Q Consensus 225 ~ 225 (404)
+
T Consensus 309 ~ 309 (388)
T PRK12723 309 F 309 (388)
T ss_pred h
Confidence 3
No 205
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.69 E-value=0.00076 Score=60.67 Aligned_cols=133 Identities=17% Similarity=0.246 Sum_probs=78.6
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (404)
++-+.+.||||.|||++.+-.+.......++....||.+.+--. -..++++.++...++.+..+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI--GA~EQLk~Ya~im~vp~~vv~------------- 267 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI--GAVEQLKTYADIMGVPLEVVY------------- 267 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh--hHHHHHHHHHHHhCCceEEec-------------
Confidence 45678999999999988776665554233333456666665433 234667666666666554433
Q ss_pred cCCCeEEeChHHHHHHHHccCCCcccceEEecccccc-ccCcHHHHHHHHhhCCCCceEEEEeeecc-hHHHHHHHhccC
Q 015595 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLP-HEILEMTTKFMT 227 (404)
Q Consensus 150 ~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~-~~~~~~~~~~~~ 227 (404)
+|..|...+.. +...++|.+|=+=+.. +......+..+........-.+.+|||.. .++.+.+..|..
T Consensus 268 --------~~~el~~ai~~--l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~ 337 (407)
T COG1419 268 --------SPKELAEAIEA--LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSL 337 (407)
T ss_pred --------CHHHHHHHHHH--hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhcc
Confidence 44444333322 4455788888776533 22344455555555544445688888875 455666666543
No 206
>PRK04296 thymidine kinase; Provisional
Probab=97.67 E-value=0.00016 Score=59.67 Aligned_cols=35 Identities=11% Similarity=0.225 Sum_probs=25.2
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
-.++.||+|+|||..++..+......+ .+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g---~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERG---MKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcC---CeEEEEec
Confidence 468899999999987776665554433 35887766
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=97.67 E-value=0.00074 Score=60.41 Aligned_cols=130 Identities=19% Similarity=0.251 Sum_probs=72.5
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEccc---HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT---RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~---~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (404)
-+++.|++|+|||++....+.. +... +.+++++... .+-..|+...... .++.+.....+....
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~-l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g~dp~------ 208 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYY-LKKN--GFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYGADPA------ 208 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH-HHHc--CCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCCCCHH------
Confidence 3678999999999876665543 3332 2346555432 3344554443333 334332211111110
Q ss_pred hcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccc-cCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhc
Q 015595 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 225 (404)
Q Consensus 149 ~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 225 (404)
..+...+........++|++|.+..+.. ......+..+.+...+...++.++|+..++.......+
T Consensus 209 -----------~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 209 -----------AVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred -----------HHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 0011222221223467999999998753 34455666666666677778999999877666655554
No 208
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.67 E-value=0.00093 Score=66.85 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=44.5
Q ss_pred CCcHHHHHhhhhhhcC-CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~-~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~ 117 (404)
.+++-|..++..++.+ +-++|.|++|+|||.+.-. +...+... +.++++++||-.-+..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~~--g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEAA--GYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHhC--CCeEEEEeCcHHHHHHH
Confidence 6899999999998875 5678999999999976444 33333332 34699999997655544
No 209
>PRK06526 transposase; Provisional
Probab=97.66 E-value=0.00049 Score=59.30 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=26.3
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEE
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (404)
+..+.++++.||+|+|||..+.......+..+ .++++.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~ 132 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFA 132 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCC---Cchhhh
Confidence 34567899999999999987776555554433 236554
No 210
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.63 E-value=0.00028 Score=69.09 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=55.3
Q ss_pred CCcHHHHHhhhhhhcC-CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~-~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
.++..|..++..++.. ...+|.||+|+|||.+....+.+.+..+. ++|+++|+..-+++..+.+...
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~---~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL---RVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC---CEEEEcCcHHHHHHHHHHHHhC
Confidence 5799999999998876 56789999999999887766666655443 6999999999999988888763
No 211
>PRK08181 transposase; Validated
Probab=97.60 E-value=0.0019 Score=56.02 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=29.7
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHH
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~ 117 (404)
-+++++++.||+|+|||..+.......+..+ .+++|+. ..+|..+.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g---~~v~f~~-~~~L~~~l 149 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENG---WRVLFTR-TTDLVQKL 149 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcC---Cceeeee-HHHHHHHH
Confidence 3577899999999999977665554444433 2365554 34455443
No 212
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.58 E-value=0.0011 Score=51.95 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
++.+++.||+|+|||..+...+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~ 40 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIA 40 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5679999999999996555433
No 213
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.57 E-value=0.0015 Score=66.60 Aligned_cols=124 Identities=20% Similarity=0.182 Sum_probs=74.4
Q ss_pred CCCCCCcHHHHHhhhhhhcCC-cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccC
Q 015595 51 YGFEKPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~-~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 129 (404)
.|+ .+++-|.+++..++.++ -++|.|+.|+|||++. -.+...+... +.+++.++||-.-+..+.+ ..+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e-------~tG 411 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEAA--GYEVRGAALSGIAAENLEG-------GSG 411 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEecCcHHHHHHHhh-------ccC
Confidence 455 79999999999999865 4689999999999763 3344443332 3469999998765544322 111
Q ss_pred eeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHH--ccCCCcccceEEeccccccccCcHHHHHHHHhhC-CCCce
Q 015595 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK--RKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYL-PPDLQ 206 (404)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~--~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~ 206 (404)
+.. .|-..|..-+. ...+...+++||||+-.+.... +..+++.. +...+
T Consensus 412 i~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~~----m~~LL~~a~~~gar 463 (988)
T PRK13889 412 IAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTRQ----LERVLSHAADAGAK 463 (988)
T ss_pred cch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCHHH----HHHHHHhhhhCCCE
Confidence 110 11111111111 1235567899999999765443 33444332 34667
Q ss_pred EEEEeee
Q 015595 207 VVLISAT 213 (404)
Q Consensus 207 ~i~~SAT 213 (404)
+|++.-+
T Consensus 464 vVLVGD~ 470 (988)
T PRK13889 464 VVLVGDP 470 (988)
T ss_pred EEEECCH
Confidence 7777665
No 214
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.56 E-value=0.00043 Score=53.95 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
++.+++.||+|+|||..+...+... .... ..++++.+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~-~~~~--~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL-GPPG--GGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc-CCCC--CCEEEECCEEc
Confidence 4578999999999997765543332 2221 23777777654
No 215
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.50 E-value=0.00036 Score=60.01 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=55.4
Q ss_pred HHHHHHhcCCCcEEEEcCccccCCCCCCC--------CEEEEccCCCChhhhhhhccccCCCCCc-eeEEEEeccC
Q 015595 311 AIMGEFRSGTTRVLITTDVWARGLDVQQV--------SLVINYDLPNNRELYIHRIGRSGRFGRK-GVAINFVKND 377 (404)
Q Consensus 311 ~~~~~f~~~~~~vlv~t~~~~~Gid~p~~--------~~vi~~~~p~s~~~~~Q~~GR~~R~g~~-~~~~~~~~~~ 377 (404)
...+.|.+|+..|+|.+++.+.|+.+..- +.-|.+.+|||....+|.+||+.|.||. +..|.++..+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 45678999999999999999999998732 3556788999999999999999999985 5556665554
No 216
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.0017 Score=58.77 Aligned_cols=131 Identities=19% Similarity=0.241 Sum_probs=66.8
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (404)
++.+++.||||+|||+.+...+.......+. .++.+++. .....--.++++.+....++.+...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~~~-------------- 200 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTT-DSYRIGGHEQLRIFGKILGVPVHAV-------------- 200 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEec-ccccccHHHHHHHHHHHcCCceEec--------------
Confidence 4567899999999998877666554433221 23444432 2222122344544444444433322
Q ss_pred cCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccC-cHHHHHHHHhhCCCCceEEEEeeecchHHH-HHHHhc
Q 015595 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRG-FKDQIYDVYRYLPPDLQVVLISATLPHEIL-EMTTKF 225 (404)
Q Consensus 150 ~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~-~~~~~~ 225 (404)
.++..+...+.+ +...++++||++=...... ....+..+.......-.++++|||...+.. +.++.|
T Consensus 201 -------~~~~~l~~~l~~--l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 201 -------KDGGDLQLALAE--LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred -------CCcccHHHHHHH--hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 222223233322 3456889999996543222 222333332222233458889999865443 344443
No 217
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.38 E-value=0.0042 Score=63.88 Aligned_cols=134 Identities=19% Similarity=0.192 Sum_probs=78.3
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHhhhhhhc-CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHH
Q 015595 41 KDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (404)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~ 119 (404)
++....+....++ .+++-|..++..+.. ++-.+|.|+.|+|||++.-. +....... +.+++.++||-.-+..+.+
T Consensus 368 ~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e~~--G~~V~g~ApTgkAA~~L~e 443 (1102)
T PRK13826 368 REAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWEAA--GYRVVGGALAGKAAEGLEK 443 (1102)
T ss_pred CHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHHHc--CCeEEEEcCcHHHHHHHHH
Confidence 3444444334444 799999999998865 45578999999999966443 33333322 3468999998765554332
Q ss_pred HHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHH--HccCCCcccceEEeccccccccCcHHHHHHH
Q 015595 120 VILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI--KRKTLRTRAIKLLDESDEMLSRGFKDQIYDV 197 (404)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l--~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 197 (404)
.. ++.. .|-..|.... ....+...+++||||+..+.... +..+
T Consensus 444 ~~-------Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~~~----m~~L 488 (1102)
T PRK13826 444 EA-------GIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVASRQ----MALF 488 (1102)
T ss_pred hh-------CCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCCHHH----HHHH
Confidence 11 1211 1111111000 11245667899999999764443 3344
Q ss_pred HhhCC-CCceEEEEeee
Q 015595 198 YRYLP-PDLQVVLISAT 213 (404)
Q Consensus 198 ~~~~~-~~~~~i~~SAT 213 (404)
++..+ ...++|++.-+
T Consensus 489 l~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 489 VEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHhcCCEEEEECCH
Confidence 44443 46677777665
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.007 Score=54.82 Aligned_cols=127 Identities=15% Similarity=0.201 Sum_probs=67.9
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc-c-H-HHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP-T-R-ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p-~-~-~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (404)
+.+.+.||+|+|||..+...+......+ .++.++.. + + +-..|+. .+....++.+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~G---kkVglI~aDt~RiaAvEQLk----~yae~lgipv~v------------- 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVIA------------- 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcC---CcEEEEecCCcchHHHHHHH----HHhhhcCCcEEe-------------
Confidence 4578999999999988776655443322 23544443 2 2 2344433 332222222211
Q ss_pred HhcCCCeEEeChHHHHHHHHccC-CCcccceEEeccccccccC-cHHHHHHHHhhCCCCceEEEEeeecch-HHHHHHHh
Q 015595 148 LEHGVHVVSGTPGRVCDMIKRKT-LRTRAIKLLDESDEMLSRG-FKDQIYDVYRYLPPDLQVVLISATLPH-EILEMTTK 224 (404)
Q Consensus 148 ~~~~~~iiv~T~~~l~~~l~~~~-~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~~~ 224 (404)
..++..+.+.+.... ....+++++|-+=+..... ....+..+++...+...++.+|||... ++...+..
T Consensus 302 --------~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~ 373 (436)
T PRK11889 302 --------VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 373 (436)
T ss_pred --------cCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHH
Confidence 234555555554322 1257899999886644322 233444444443344446779987654 44555555
Q ss_pred c
Q 015595 225 F 225 (404)
Q Consensus 225 ~ 225 (404)
+
T Consensus 374 F 374 (436)
T PRK11889 374 F 374 (436)
T ss_pred h
Confidence 4
No 219
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.0013 Score=61.22 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=17.4
Q ss_pred cEEEEcCCCCchhhHhHHHHHh
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
..++.||.|+|||.++...+..
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3699999999999877665443
No 220
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0019 Score=57.93 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=31.4
Q ss_pred CCcHHHHHhhhhhhcCC----cEEEEcCCCCchhhHhHHHHHhhh
Q 015595 55 KPSAIQQRAVMPIIKGR----DVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~----~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
.++|||...|..+...+ ..++.||.|.|||..+...+...+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 35899999999888653 468999999999977766554444
No 221
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.23 E-value=0.0022 Score=64.12 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=56.0
Q ss_pred CcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc-CCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
|++-|++++.+ ...+++|.|++|||||.+...-+.+.+.. +-...++|+++.++..+.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 78999999875 35689999999999999988888887754 3344579999999999999999987754
No 222
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.22 E-value=0.0015 Score=64.42 Aligned_cols=70 Identities=23% Similarity=0.242 Sum_probs=55.9
Q ss_pred CCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC-CCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
..+++-|++++.. ...+++|.|..|||||.+...-+.+.+... ..+.++|+++.++..+..+.+.+....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4799999999864 345689999999999998877776666443 234579999999999999999887644
No 223
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.20 E-value=0.0025 Score=52.44 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=33.4
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
++|.|++|+|||..++..+...+..+. +++|++.. +-..+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~---~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE---PGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC---cEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999887776666664443 48888653 4455665656554
No 224
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.18 E-value=0.0079 Score=56.03 Aligned_cols=128 Identities=17% Similarity=0.231 Sum_probs=66.0
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhh-hcCCCceeEEEEcc-c-HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTV-DTSSREVQALILSP-T-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~-~~~~~~~~~lil~p-~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (404)
++.+++.+|||+|||.++...+.... ..+. .++.++.- + +.-+ .+++..+....++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g--~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~~------------ 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK--KKVALITLDTYRIGA---VEQLKTYAKIMGIPVEV------------ 283 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--CeEEEEECCccHHHH---HHHHHHHHHHhCCceEc------------
Confidence 34678899999999988776555443 2222 23444442 2 2111 23343333333332211
Q ss_pred HHhcCCCeEEeChHHHHHHHHccCCCcccceEEecccccccc-CcHHHHHHHHhh-CCCCceEEEEeeecchH-HHHHHH
Q 015595 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSR-GFKDQIYDVYRY-LPPDLQVVLISATLPHE-ILEMTT 223 (404)
Q Consensus 147 ~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~-~~~~~~ 223 (404)
+.+++.+...+.. +...++|+||.+-..... .....+..++.. ..+....++++||.... +.....
T Consensus 284 ---------~~~~~~l~~~l~~--~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~ 352 (424)
T PRK05703 284 ---------VYDPKELAKALEQ--LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYK 352 (424)
T ss_pred ---------cCCHHhHHHHHHH--hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHH
Confidence 2333444444443 335799999998654322 222344455442 12334578899988753 344444
Q ss_pred hc
Q 015595 224 KF 225 (404)
Q Consensus 224 ~~ 225 (404)
.+
T Consensus 353 ~f 354 (424)
T PRK05703 353 HF 354 (424)
T ss_pred Hh
Confidence 43
No 225
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.17 E-value=0.0011 Score=65.91 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=57.1
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc-CCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
.|++-|++++.+ ....++|.|++|||||.+...-+.+.+.. +-...++|+++-|+..+.++.+.+.+..
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 479999999975 34678999999999999988888887754 3344579999999999999999888754
No 226
>PRK05642 DNA replication initiation factor; Validated
Probab=97.15 E-value=0.0026 Score=54.34 Aligned_cols=44 Identities=14% Similarity=0.336 Sum_probs=27.6
Q ss_pred cccceEEecccccccc-CcHHHHHHHHhhCCCCceEEEEeeecch
Q 015595 173 TRAIKLLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPH 216 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 216 (404)
..+++|+|++|.+... .+...+..+++.+....+.+++|++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4478899999976543 3345566666655443345667777544
No 227
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.11 E-value=0.0015 Score=55.19 Aligned_cols=107 Identities=18% Similarity=0.325 Sum_probs=59.5
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhc
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (404)
+.+++.||+|+|||-. +.++.+.+....++.+++|+... +........++.
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~--------------------------- 85 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD--------------------------- 85 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT---------------------------
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc---------------------------
Confidence 3579999999999964 44455555444445567777653 334333333321
Q ss_pred CCCeEEeChHHHHHHHHccCCCcccceEEeccccccccC-cHHHHHHHHhhC-CCCceEEEEeeecchH
Q 015595 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRG-FKDQIYDVYRYL-PPDLQVVLISATLPHE 217 (404)
Q Consensus 151 ~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~-~~~~~~i~~SAT~~~~ 217 (404)
...+.+.+ .+...+++++|++|.+.... ....+..+++.+ ....++|+.|..+|.+
T Consensus 86 ------~~~~~~~~-----~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 86 ------GEIEEFKD-----RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp ------TSHHHHHH-----HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred ------ccchhhhh-----hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 11112221 24467899999999986543 334444444443 2355666666566554
No 228
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.09 E-value=4.3e-05 Score=73.44 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=60.2
Q ss_pred HHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhc---CCCcEEEEcCccc
Q 015595 257 KFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS---GTTRVLITTDVWA 331 (404)
Q Consensus 257 ~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~vlv~t~~~~ 331 (404)
|...|...++. ..+++++||..-....+.+..++...+ ....++|..+...|+..+..|+. ....+|++|.+.+
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g 694 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGG 694 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccccc
Confidence 34444444443 246799999999999999999998888 88899999999999999999983 3457888999877
Q ss_pred cC
Q 015595 332 RG 333 (404)
Q Consensus 332 ~G 333 (404)
.|
T Consensus 695 ~g 696 (696)
T KOG0383|consen 695 LG 696 (696)
T ss_pred CC
Confidence 65
No 229
>PRK08727 hypothetical protein; Validated
Probab=97.08 E-value=0.0032 Score=53.76 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=22.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
+.+++.|++|+|||-.+.......... +.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~---~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA---GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEe
Confidence 348999999999996655444333332 23466664
No 230
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.08 E-value=0.0044 Score=62.37 Aligned_cols=40 Identities=15% Similarity=0.300 Sum_probs=27.7
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
...++++||||+|.+.... .+.+.++++..+....+|+.+
T Consensus 118 ~~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3567899999999986544 455666666666666666554
No 231
>PRK06921 hypothetical protein; Provisional
Probab=97.04 E-value=0.017 Score=50.24 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=25.0
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
++++++.|++|+|||..+...+....... +..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~--g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK--GVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc--CceEEEEEH
Confidence 56799999999999977655444333321 234666654
No 232
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.04 E-value=0.0049 Score=60.36 Aligned_cols=39 Identities=13% Similarity=0.303 Sum_probs=24.5
Q ss_pred CcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 172 RTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
..++++||||+|.+.... .+.+.+.++.-+....+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEE
Confidence 356889999999886655 344555556545555444433
No 233
>PRK09183 transposase/IS protein; Provisional
Probab=97.04 E-value=0.011 Score=51.27 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=28.6
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~ 115 (404)
+.++.++++.||+|+|||..+..........+ ..++++. ..++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G---~~v~~~~-~~~l~~ 143 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAG---IKVRFTT-AADLLL 143 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEe-HHHHHH
Confidence 44577899999999999977665544433332 3466554 234443
No 234
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.04 E-value=0.0012 Score=52.88 Aligned_cols=123 Identities=14% Similarity=0.165 Sum_probs=53.2
Q ss_pred EEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHH-HHHHhcCC
Q 015595 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED-IRKLEHGV 152 (404)
Q Consensus 74 iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 152 (404)
++.|+-|-|||.+.-+++...+..+. .++++..|+.+-++...+.+.......+.+... ...... ........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~ 74 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENVQTLFEFAEKGLKALGYKEEK----KKRIGQIIKLRFNKQ 74 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC------------------------------CC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHHHHHHHHHHhhcccccccccc----ccccccccccccccc
Confidence 57899999999766655555544443 469999999987777666655433333222200 000000 00011235
Q ss_pred CeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecc
Q 015595 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 215 (404)
Q Consensus 153 ~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 215 (404)
.|-+..|+.+... ....+++|||||=.+ -...+..+.+. ...+++|.|..
T Consensus 75 ~i~f~~Pd~l~~~-----~~~~DlliVDEAAaI----p~p~L~~ll~~----~~~vv~stTi~ 124 (177)
T PF05127_consen 75 RIEFVAPDELLAE-----KPQADLLIVDEAAAI----PLPLLKQLLRR----FPRVVFSTTIH 124 (177)
T ss_dssp C--B--HHHHCCT---------SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEBS
T ss_pred eEEEECCHHHHhC-----cCCCCEEEEechhcC----CHHHHHHHHhh----CCEEEEEeecc
Confidence 5666666555422 224589999999875 33445555433 23567777763
No 235
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.02 E-value=0.0079 Score=48.07 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=24.7
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
+++.|++|+|||..+...+...... +..++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK---GGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEECCcc
Confidence 5789999999998766555444332 334777766444
No 236
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.02 E-value=0.003 Score=63.99 Aligned_cols=146 Identities=15% Similarity=0.047 Sum_probs=87.0
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcC---------------CCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEE
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTS---------------SREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~---------------~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~ 134 (404)
|+.+++.-..|+|||...+.......... ....-+||||| .++..||.+++.+..... +.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P-~aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP-NAILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECc-HHHHHHHHHHHHHhcccc-ceEEE
Confidence 45678888999999977554443332111 01234999999 588999999999977444 56655
Q ss_pred EEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccC--------------C-Cccc-------ceEEeccccccccCcHH
Q 015595 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--------------L-RTRA-------IKLLDESDEMLSRGFKD 192 (404)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--------------~-~~~~-------~vIiDE~h~~~~~~~~~ 192 (404)
..|=.............++|++||++.+..-+.... . .... -|++||++.+-. + ..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves-s-sS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES-S-SS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc-h-HH
Confidence 555221111111222359999999998886553210 0 0011 136899996544 2 33
Q ss_pred HHHHHHhhCCCCceEEEEeeecchHHHH
Q 015595 193 QIYDVYRYLPPDLQVVLISATLPHEILE 220 (404)
Q Consensus 193 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~ 220 (404)
...+....++ ....=++|+||-..+.+
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchhhhhh
Confidence 3444444443 33468899998655443
No 237
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.01 E-value=0.0041 Score=58.85 Aligned_cols=45 Identities=9% Similarity=0.191 Sum_probs=27.7
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~ 117 (404)
+.+++.||+|+|||..+... ...+.....+.+++++.. ..+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai-~~~~~~~~~~~~v~yi~~-~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAI-GNYILEKNPNAKVVYVTS-EKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHHHH-HHHHHHhCCCCeEEEEEH-HHHHHHH
Confidence 45899999999999665543 343433333455666644 4444443
No 238
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.98 E-value=0.0098 Score=50.64 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=33.9
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
-.+.-+++.+++|+|||..+...+...+..+ .++++++... -..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e~-~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQL-TTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCCC-CHHHHHHHHHHh
Confidence 3466789999999999988666555544433 3478887533 334444444443
No 239
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.016 Score=49.69 Aligned_cols=143 Identities=12% Similarity=0.145 Sum_probs=81.8
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcC-----CcEEEEcCCCCchhhHhHHHHHhhhhcCCCcee
Q 015595 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ 103 (404)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-----~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~ 103 (404)
.+|...|++..--+...++|++.-+.... +|++..| +.+++.+|+|+||+..+- ..+...+ .
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIK------FPqlFtGkR~PwrgiLLyGPPGTGKSYLAK------AVATEAn-S 192 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIK------FPQLFTGKRKPWRGILLYGPPGTGKSYLAK------AVATEAN-S 192 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeeccc------chhhhcCCCCcceeEEEeCCCCCcHHHHHH------HHHhhcC-C
Confidence 45666788776666777788775442221 3344454 358999999999994322 2122222 3
Q ss_pred EEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccc
Q 015595 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESD 183 (404)
Q Consensus 104 ~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h 183 (404)
+++-+.+..|+..|.-+-.++.+ .+..+.. -...+++.+||++
T Consensus 193 TFFSvSSSDLvSKWmGESEkLVk----------------------------------nLFemAR---e~kPSIIFiDEiD 235 (439)
T KOG0739|consen 193 TFFSVSSSDLVSKWMGESEKLVK----------------------------------NLFEMAR---ENKPSIIFIDEID 235 (439)
T ss_pred ceEEeehHHHHHHHhccHHHHHH----------------------------------HHHHHHH---hcCCcEEEeehhh
Confidence 78888888888776655444320 1112222 2334677899999
Q ss_pred cccccC------cHHHH-HHHHhhC----CCCceEEEEeeecchHHHHH
Q 015595 184 EMLSRG------FKDQI-YDVYRYL----PPDLQVVLISATLPHEILEM 221 (404)
Q Consensus 184 ~~~~~~------~~~~~-~~~~~~~----~~~~~~i~~SAT~~~~~~~~ 221 (404)
.+.... ..+.+ ..++-.+ ..+-.++.+.||-.+...+-
T Consensus 236 slcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 236 SLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDS 284 (439)
T ss_pred hhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHH
Confidence 865331 11112 1222222 23456899999987765554
No 240
>PRK06893 DNA replication initiation factor; Validated
Probab=96.98 E-value=0.0033 Score=53.56 Aligned_cols=46 Identities=17% Similarity=0.363 Sum_probs=27.4
Q ss_pred CcccceEEecccccccc-CcHHHHHHHHhhCC-CCceEEEEeeecchH
Q 015595 172 RTRAIKLLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVVLISATLPHE 217 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~-~~~~~i~~SAT~~~~ 217 (404)
...+++++||+|.+... .+...+..+++... ...+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 45688999999987533 23334444444433 234566777776543
No 241
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.96 E-value=0.071 Score=59.27 Aligned_cols=208 Identities=14% Similarity=0.175 Sum_probs=107.4
Q ss_pred CCcHHHHHhhhhhhcC--CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeE
Q 015595 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~ 132 (404)
.+++-|.+++..++.+ +-.+|.++.|+|||.+.-. +...+... +.+++.++|+..-+..+.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~-l~~~~~~~--G~~V~~lAPTgrAA~~L~e~~g~~A------- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQL-LLHLASEQ--GYEIQIITAGSLSAQELRQKIPRLA------- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHH-HHHHHHhc--CCeEEEEeCCHHHHHHHHHHhcchh-------
Confidence 6899999999998875 4568999999999966443 33333332 4579999999876665554432100
Q ss_pred EEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhC-CCCceEEEEe
Q 015595 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLIS 211 (404)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~S 211 (404)
.........+..+ .-..|...|.. ....+...+++||||+-.+... .+..+++.. +...++|++.
T Consensus 499 ------~Ti~~~l~~l~~~--~~~~tv~~fl~--~~~~l~~~~vlIVDEAsMl~~~----~~~~Ll~~a~~~garvVlvG 564 (1960)
T TIGR02760 499 ------STFITWVKNLFND--DQDHTVQGLLD--KSSPFSNKDIFVVDEANKLSNN----ELLKLIDKAEQHNSKLILLN 564 (1960)
T ss_pred ------hhHHHHHHhhccc--ccchhHHHhhc--ccCCCCCCCEEEEECCCCCCHH----HHHHHHHHHhhcCCEEEEEc
Confidence 0000011111110 11122222321 2223456789999999977443 444444433 3577888887
Q ss_pred eec-------chHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHH-hhhhcC-CCCeEEEEecchhh
Q 015595 212 ATL-------PHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLC-DLYDTL-TITQAVIFCNTKRK 282 (404)
Q Consensus 212 AT~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~-~~~k~lIf~~~~~~ 282 (404)
-+- ...+. .+... +-+....... ......+ .+.. .........+. .++... ...+++|+..+.+.
T Consensus 565 D~~QL~sV~aG~~f~-~L~~~-gv~t~~l~~i-~rq~~~v--~i~~-~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~~d 638 (1960)
T TIGR02760 565 DSAQRQGMSAGSAID-LLKEG-GVTTYAWVDT-KQQKASV--EISE-AVDKLRVDYIASAWLDLTPDRQNSQVLATTHRE 638 (1960)
T ss_pred ChhhcCccccchHHH-HHHHC-CCcEEEeecc-cccCcce--eeec-cCchHHHHHHHHHHHhcccccCceEEEcCCcHH
Confidence 763 23333 33332 1122111111 0001111 1111 11222333333 333322 23358999999888
Q ss_pred HHHHHHHHhh
Q 015595 283 VDWLTEKMRG 292 (404)
Q Consensus 283 ~~~l~~~l~~ 292 (404)
.+.|....+.
T Consensus 639 r~~Ln~~iR~ 648 (1960)
T TIGR02760 639 QQDLTQIIRN 648 (1960)
T ss_pred HHHHHHHHHH
Confidence 8777766644
No 242
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.96 E-value=0.016 Score=49.52 Aligned_cols=108 Identities=12% Similarity=0.176 Sum_probs=55.8
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhc
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (404)
..+++.|++|+|||..+...+......+ ..++++ +...+.......+..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~i-t~~~l~~~l~~~~~~--------------------------- 148 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLII-TVADIMSAMKDTFSN--------------------------- 148 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEE-EHHHHHHHHHHHHhh---------------------------
Confidence 4689999999999977665444443332 346555 323333322221100
Q ss_pred CCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHH-HHHHHHhhC-CCCceEEEEeeecchHH
Q 015595 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKD-QIYDVYRYL-PPDLQVVLISATLPHEI 218 (404)
Q Consensus 151 ~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~-~~~~~~~~~-~~~~~~i~~SAT~~~~~ 218 (404)
. -.+.+.+.+. +...+++||||++......+.. .+..++... .....+++.|--...++
T Consensus 149 -~---~~~~~~~l~~-----l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 149 -S---ETSEEQLLND-----LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred -c---cccHHHHHHH-----hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 0 0111122222 4467899999999865444333 344454432 22445666555544433
No 243
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.96 E-value=0.0021 Score=64.56 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=57.8
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc-CCCceeEEEEcccHHHHHHHHHHHHHHcc
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIGD 126 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 126 (404)
.|++-|++++.+ ....++|.|.+|||||.+...-+.+.+.. +-...++|+++-|+..+.++.+.+.+...
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 589999999975 34679999999999999988888777754 33445799999999999999999887643
No 244
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.95 E-value=0.0062 Score=57.32 Aligned_cols=49 Identities=16% Similarity=0.332 Sum_probs=31.3
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~ 121 (404)
+.+++.|++|+|||... .++...+....++.+++++.+ ..+..+....+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 45889999999999654 344555444444556777666 45555544444
No 245
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.0043 Score=61.90 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=23.7
Q ss_pred CcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEE
Q 015595 172 RTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 210 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 210 (404)
....++||||+|.+.... ...+.+.++.-+...++|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 356889999999985444 34455555554445554443
No 246
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.91 E-value=0.0026 Score=63.85 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=57.1
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc-CCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
.|++-|++++.+. ...++|.|++|||||.+...-+.+.+.. +-...++|+++-|+..+.++.+.+.+..
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 5899999999753 4679999999999999988877777753 3344579999999999999999988764
No 247
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.90 E-value=0.0028 Score=58.04 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=41.6
Q ss_pred CCcHHHHHhhhhh------hcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHH
Q 015595 55 KPSAIQQRAVMPI------IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (404)
Q Consensus 55 ~~~~~Q~~~~~~~------~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~ 115 (404)
+|+.-|++++..+ .++..++|.|+.|+|||+++-... ..+.. .+..+++++||-.-+.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~-~~~~~--~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAII-DYLRS--RGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHH-HHhcc--ccceEEEecchHHHHH
Confidence 3678899998887 567889999999999997755433 33322 2346888999865443
No 248
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.0061 Score=58.79 Aligned_cols=41 Identities=12% Similarity=0.298 Sum_probs=25.5
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEee
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 212 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 212 (404)
...++++||||+|.+....+ +.+.+.++.-+.+..+|+.|-
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeC
Confidence 34568999999998866553 344445555445555555443
No 249
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.90 E-value=0.0085 Score=47.93 Aligned_cols=119 Identities=12% Similarity=0.133 Sum_probs=60.2
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcC
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (404)
..++.||.|+||+..+...+...+....... .|..-.-+. .+.......+..+......
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~~c~~c~-------~~~~~~~~d~~~~~~~~~~---------- 79 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNED----PCGECRSCR-------RIEEGNHPDFIIIKPDKKK---------- 79 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------SSSHHHH-------HHHTT-CTTEEEEETTTSS----------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCHHHH-------HHHhccCcceEEEeccccc----------
Confidence 4699999999999877766655554443322 222222222 1111111222222222110
Q ss_pred CCeEEeChHHHHHHHHcc----CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecc
Q 015595 152 VHVVSGTPGRVCDMIKRK----TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 215 (404)
Q Consensus 152 ~~iiv~T~~~l~~~l~~~----~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 215 (404)
..+- -+.+..+.... .....+++|+||+|.+.... .+.+.+.++.-+....++++|..+.
T Consensus 80 ~~i~---i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 80 KSIK---IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSBS---HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred chhh---HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECChH
Confidence 0111 13333333322 23467899999999876555 6677777787676776666665543
No 250
>PRK12377 putative replication protein; Provisional
Probab=96.89 E-value=0.016 Score=49.71 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=27.0
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~ 118 (404)
.++++.|++|+|||..+...+-.....+ ..++++ +..+|..+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i-~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVV-TVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEE-EHHHHHHHHH
Confidence 5789999999999977665444444332 235444 3345555443
No 251
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.89 E-value=0.017 Score=44.22 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=14.8
Q ss_pred EEEEcCCCCchhhHhHHHH
Q 015595 73 VIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~ 91 (404)
+++.||+|+|||..+-..+
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 5789999999996655433
No 252
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.0088 Score=56.40 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=24.6
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
.....++||||+|.+.... .+.+.+.++.-++...+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A-~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSA-FNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999876544 334455555544444444433
No 253
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.0027 Score=56.76 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
.+.|+.||+|+|||..+-+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred ceeEEECCCCCCHHHHHHHH
Confidence 36799999999999776553
No 254
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.87 E-value=0.0079 Score=51.23 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=19.8
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhh
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQT 94 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~ 94 (404)
.+..+++.|++|+|||..+.......
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999997766544443
No 255
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.86 E-value=0.0066 Score=56.67 Aligned_cols=38 Identities=13% Similarity=0.257 Sum_probs=24.8
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
+.+++.|++|+|||..+.. +...+.....+.+++++..
T Consensus 137 n~l~l~G~~G~GKThL~~a-i~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHA-IGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHHH-HHHHHHHhCCCCcEEEEEH
Confidence 4578999999999976543 4444433333455777643
No 256
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.0081 Score=57.37 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=26.0
Q ss_pred CcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 172 RTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
..++++||||+|.+....+ +.+.+.++..|....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 3568999999998866553 44555666656566555544
No 257
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.0072 Score=58.43 Aligned_cols=39 Identities=10% Similarity=0.213 Sum_probs=24.8
Q ss_pred CcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 172 RTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
...+++||||+|.+.... ...+...++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 356789999999876554 345555566555555555433
No 258
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.84 E-value=0.014 Score=54.34 Aligned_cols=129 Identities=12% Similarity=0.190 Sum_probs=63.5
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc-c-HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP-T-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p-~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (404)
.++++|++|+|||.++...+... ... +.+++++.. + +.- ..++++.+....++.+..........
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L-~~~--g~kV~lV~~D~~R~a---a~eQL~~la~~~gvp~~~~~~~~d~~------- 163 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYF-KKK--GLKVGLVAADTYRPA---AYDQLKQLAEKIGVPFYGDPDNKDAV------- 163 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHc--CCeEEEecCCCCCHH---HHHHHHHHHHHcCCcEEecCCccCHH-------
Confidence 46789999999998877655443 332 224555543 2 221 22333333323333322111111100
Q ss_pred cCCCeEEeChHHHHHHHHccCCCcccceEEecccccc-ccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhc
Q 015595 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 225 (404)
Q Consensus 150 ~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 225 (404)
+.+.+.+... ...++||+|.+-+.. +......+..+.....+..-++.++|+...+.......+
T Consensus 164 ----------~i~~~al~~~--~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 164 ----------EIAKEGLEKF--KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred ----------HHHHHHHHHh--hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 1112222221 123888899984432 222334455555555556667888888776655555543
No 259
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0056 Score=54.43 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=45.5
Q ss_pred cccccccCCCCHHHHHHHHHC------CC--C---CCcHH---HHHh------hhhhhcC-----CcEEEEcCCCCchhh
Q 015595 31 AITSFDAMGIKDDLLRGIYQY------GF--E---KPSAI---QQRA------VMPIIKG-----RDVIAQAQSGTGKTS 85 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~------~~--~---~~~~~---Q~~~------~~~~~~~-----~~~iv~a~tGsGKT~ 85 (404)
....|+..++...+.++|+.- ++ . .+... -+++ +|.+.+| +.+++.+|+|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 456788888888888888641 11 0 11111 1111 2223333 679999999999994
Q ss_pred HhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHH
Q 015595 86 MIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (404)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~ 119 (404)
.+=. .....+ .++|=+.+..|...|.-
T Consensus 261 LAKA------vATEc~-tTFFNVSsstltSKwRG 287 (491)
T KOG0738|consen 261 LAKA------VATECG-TTFFNVSSSTLTSKWRG 287 (491)
T ss_pred HHHH------HHHhhc-CeEEEechhhhhhhhcc
Confidence 4322 222222 36666666666655443
No 260
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.011 Score=52.56 Aligned_cols=43 Identities=23% Similarity=0.259 Sum_probs=31.9
Q ss_pred CCCcHHHHHhhhhhhc----CC---cEEEEcCCCCchhhHhHHHHHhhhh
Q 015595 54 EKPSAIQQRAVMPIIK----GR---DVIAQAQSGTGKTSMIALTVCQTVD 96 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~~----~~---~~iv~a~tGsGKT~~~~~~~~~~~~ 96 (404)
..++|||...|..+.. ++ ..++.||.|.||+..+...+...+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 4678999999887664 22 4789999999999877665544443
No 261
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.021 Score=50.47 Aligned_cols=79 Identities=16% Similarity=0.276 Sum_probs=47.1
Q ss_pred CCcccccccccCCCCHHHHHHHHH---CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCcee
Q 015595 27 EGVEAITSFDAMGIKDDLLRGIYQ---YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ 103 (404)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~~~l~~---~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~ 103 (404)
....|..+|++.|=-+..++.+++ ....+|--+++-.+. .-+.+++.||+|+|||+.+ +..++..+.
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTLLA------kAVA~~T~A- 211 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTLLA------KAVANQTDA- 211 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHHHH------HHHHhccCc-
Confidence 344566778888755555565655 345455555544443 3467999999999999442 222333333
Q ss_pred EEEEcccHHHHH
Q 015595 104 ALILSPTRELAT 115 (404)
Q Consensus 104 ~lil~p~~~L~~ 115 (404)
.++=+...+|++
T Consensus 212 tFIrvvgSElVq 223 (406)
T COG1222 212 TFIRVVGSELVQ 223 (406)
T ss_pred eEEEeccHHHHH
Confidence 445555556654
No 262
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.80 E-value=0.0091 Score=50.88 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=19.3
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhh
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQT 94 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~ 94 (404)
.++.+++.|++|+|||..+..+....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999997666544443
No 263
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.80 E-value=0.004 Score=54.31 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCchhhHhHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.++++.||+|+|||.++-..+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 468999999999997765443
No 264
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.79 E-value=0.0082 Score=51.35 Aligned_cols=37 Identities=5% Similarity=0.114 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
+..+++.||+|+|||..+..+....... +.++.|+.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~---~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR---GRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEEH
Confidence 3578999999999997665544333322 234665544
No 265
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.0082 Score=55.04 Aligned_cols=39 Identities=15% Similarity=0.332 Sum_probs=23.6
Q ss_pred CcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 172 RTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
....++|+||+|.+....+ ..+...++..+....+|+.|
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4567899999998865432 33444455544455555543
No 266
>PLN03025 replication factor C subunit; Provisional
Probab=96.76 E-value=0.015 Score=52.39 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=25.6
Q ss_pred cccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeee
Q 015595 173 TRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 213 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 213 (404)
..+++|+||+|.+.... ...+...++..++...+++ +++
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il-~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFAL-ACN 137 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEE-EeC
Confidence 46789999999976544 4556666666555555544 443
No 267
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.014 Score=56.45 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=26.7
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
.....++||||+|.+.... .+.+...++..+....+|+.|
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 4567899999999886654 445556666655555555544
No 268
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.74 E-value=0.045 Score=47.58 Aligned_cols=127 Identities=14% Similarity=0.201 Sum_probs=68.3
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc-c--HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP-T--RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p-~--~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (404)
..+.+.+++|+|||..+...+...... +.++.++.. . .+...||...... .++.+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~~------------- 135 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVIA------------- 135 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHHhhh----cCceEEe-------------
Confidence 567899999999998766554443222 223444443 2 2445555443322 2222211
Q ss_pred HhcCCCeEEeChHHHHHHHHcc-CCCcccceEEeccccccc-cCcHHHHHHHHhhCCCCceEEEEeeecch-HHHHHHHh
Q 015595 148 LEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPH-EILEMTTK 224 (404)
Q Consensus 148 ~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~~~ 224 (404)
..+++.+...+... .....+++|+|.+=+... ......+..+.+...+...++.+|||... +....+..
T Consensus 136 --------~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~ 207 (270)
T PRK06731 136 --------VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 207 (270)
T ss_pred --------cCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHH
Confidence 12344444443322 224579999999876532 22334444555554445557789998654 55566555
Q ss_pred c
Q 015595 225 F 225 (404)
Q Consensus 225 ~ 225 (404)
+
T Consensus 208 f 208 (270)
T PRK06731 208 F 208 (270)
T ss_pred h
Confidence 4
No 269
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.73 E-value=0.0091 Score=58.19 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=24.0
Q ss_pred CcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEE
Q 015595 172 RTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 210 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 210 (404)
..+.++||||+|.+.... .+.+.+.++.-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 456789999999886655 44455555654444444443
No 270
>PRK08116 hypothetical protein; Validated
Probab=96.73 E-value=0.024 Score=49.43 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q 116 (404)
..+++.|++|+|||..+...+-..... +..++++. ..++...
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~-~~~ll~~ 156 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVN-FPQLLNR 156 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEE-HHHHHHH
Confidence 348999999999997766544333333 22355443 3444443
No 271
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.72 E-value=0.013 Score=62.63 Aligned_cols=62 Identities=23% Similarity=0.260 Sum_probs=44.0
Q ss_pred CCcHHHHHhhhhhhcC--CcEEEEcCCCCchhhHhHHH--HHhhhhcCCCceeEEEEcccHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALT--VCQTVDTSSREVQALILSPTRELATQT 117 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~iv~a~tGsGKT~~~~~~--~~~~~~~~~~~~~~lil~p~~~L~~q~ 117 (404)
.+++-|.+++..++.+ +-++|.|..|+|||.+.-.. ++..+.. ..+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-ccCceEEEEechHHHHHHH
Confidence 6899999999999865 66799999999999774322 2222221 2234688899987666554
No 272
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.72 E-value=0.018 Score=54.20 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=25.4
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
+.+++.||+|+|||..+.. +.+.+.....+.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~a-i~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQS-IGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHH-HHHHHHHhCCCCeEEEEEH
Confidence 4689999999999976554 3444434333456777765
No 273
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.019 Score=46.26 Aligned_cols=102 Identities=14% Similarity=0.070 Sum_probs=57.3
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcC
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (404)
-.++.+|+.||||...+..+......+. ++++..|...- ..+........|...
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g~---~v~vfkp~iD~-------------R~~~~~V~Sr~G~~~---------- 59 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAGM---KVLVFKPAIDT-------------RYGVGKVSSRIGLSS---------- 59 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHcCC---eEEEEeccccc-------------ccccceeeeccCCcc----------
Confidence 3588999999999876655554444443 48888885320 111222222222221
Q ss_pred CCeEEeChHHHHHHHHcc-CCCcccceEEeccccccccCcHHHHHHHHhh
Q 015595 152 VHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDEMLSRGFKDQIYDVYRY 200 (404)
Q Consensus 152 ~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~ 200 (404)
..+.|-+...+...+... .....+++.+||++-+ +......+..+...
T Consensus 60 ~A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~-~~~~v~~l~~lad~ 108 (201)
T COG1435 60 EAVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFF-DEELVYVLNELADR 108 (201)
T ss_pred cceecCChHHHHHHHHhcccCCCcCEEEEehhHhC-CHHHHHHHHHHHhh
Confidence 334455555666665544 3334789999999954 33334444454443
No 274
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.70 E-value=0.0046 Score=57.58 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=77.2
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH-HHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhc
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE-LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (404)
-.++.|+.|||||.+....++..+....++.+++++-++.. +.......+......+++....-...... .+.....
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i~~~~~ 80 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EIKILNT 80 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EEEecCC
Confidence 35789999999999888777776666433467888888765 67777777776554444321111111100 0100011
Q ss_pred CCCeEEeCh-HHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecchH
Q 015595 151 GVHVVSGTP-GRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHE 217 (404)
Q Consensus 151 ~~~iiv~T~-~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 217 (404)
+..|++... +...++. ....++++.+||+..+....+...+.++ +. +.....+.+|.+|...
T Consensus 81 g~~i~f~g~~d~~~~ik---~~~~~~~~~idEa~~~~~~~~~~l~~rl-r~-~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 81 GKKFIFKGLNDKPNKLK---SGAGIAIIWFEEASQLTFEDIKELIPRL-RE-TGGKKFIIFSSNPESP 143 (396)
T ss_pred CeEEEeecccCChhHhh---CcceeeeehhhhhhhcCHHHHHHHHHHh-hc-cCCccEEEEEcCcCCC
Confidence 344555443 2222221 2233578889999998655444444332 21 1222247888888653
No 275
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.67 E-value=0.039 Score=51.10 Aligned_cols=130 Identities=11% Similarity=0.099 Sum_probs=60.7
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc--cHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhc
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP--TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p--~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (404)
+.++|++|+|||+++.-.+...... +.++++++. .+.-+ .++++.+....++.+.....+.....-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~---G~kV~lV~~D~~R~aA---~eQLk~~a~~~~vp~~~~~~~~dp~~i------ 170 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRK---GFKPCLVCADTFRAGA---FDQLKQNATKARIPFYGSYTESDPVKI------ 170 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEcCcccchhH---HHHHHHHhhccCCeEEeecCCCCHHHH------
Confidence 5789999999998777655443222 234665553 23322 233444443444444333222221000
Q ss_pred CCCeEEeChHHHHHHHHccCCCcccceEEecccccccc-CcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhc
Q 015595 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 225 (404)
Q Consensus 151 ~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 225 (404)
..+.+....-..+++||+|=+-+.... .....+..+.....+.-.++.++|+...+.......+
T Consensus 171 -----------~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 171 -----------ASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred -----------HHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 001111111134566667766543222 2233444444444444456667777655444444433
No 276
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.65 E-value=0.032 Score=50.11 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q 116 (404)
+.++++.|+||+|||..+...+...+..+ ..++++.- ..+..+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~t~-~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYRTA-DELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEEH-HHHHHH
Confidence 57899999999999987665444444332 34666543 445443
No 277
>CHL00181 cbbX CbbX; Provisional
Probab=96.62 E-value=0.0082 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCchhhHhHHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVC 92 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~ 92 (404)
+.++++.||+|+|||.++-..+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44589999999999987665543
No 278
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.62 E-value=0.0059 Score=58.21 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=51.7
Q ss_pred HHHHHhhhhhhc-----C----CcEEEEcCCCCchhhHhHHHHHhhh-hcCCCceeEEEEcccHHHHHHHHHHHHHHccc
Q 015595 58 AIQQRAVMPIIK-----G----RDVIAQAQSGTGKTSMIALTVCQTV-DTSSREVQALILSPTRELATQTEKVILAIGDF 127 (404)
Q Consensus 58 ~~Q~~~~~~~~~-----~----~~~iv~a~tGsGKT~~~~~~~~~~~-~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 127 (404)
|||.-++..+.. + +.+++..|=|-|||......++..+ ..+..+..++++++++.-+...++.+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 577776666551 2 3578899999999987766555544 44455678999999999999998888876543
No 279
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.60 E-value=0.014 Score=51.36 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
+.++++.||+|+|||.++-.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 45789999999999987654
No 280
>PF13173 AAA_14: AAA domain
Probab=96.58 E-value=0.042 Score=42.00 Aligned_cols=40 Identities=10% Similarity=0.282 Sum_probs=25.2
Q ss_pred cccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecch
Q 015595 173 TRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 216 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 216 (404)
...++++||+|.+.+ +...+..+.... ++.+++ +|++...
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii-~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKII-LTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEE-EEccchH
Confidence 456789999998753 556677766654 344544 5555433
No 281
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.58 E-value=0.015 Score=55.03 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=17.1
Q ss_pred cEEEEcCCCCchhhHhHHHHHh
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
..++.||+|+|||..+...+..
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999877665433
No 282
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.017 Score=55.37 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=25.9
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
.....++||||+|.+.... ...+...++..+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3456789999999976544 345556666655555555544
No 283
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.56 E-value=0.02 Score=55.89 Aligned_cols=40 Identities=10% Similarity=0.209 Sum_probs=25.3
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
....+++||||+|.+.... ...+.+.+...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3456899999999875543 334555555555566555554
No 284
>PTZ00293 thymidine kinase; Provisional
Probab=96.56 E-value=0.017 Score=47.84 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (404)
|.-.++.||++||||.-.+..+......+. +++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~---kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEK---KCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCC---ceEEEEecc
Confidence 444688999999999766665554444443 488888864
No 285
>PHA02533 17 large terminase protein; Provisional
Probab=96.55 E-value=0.014 Score=56.05 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=53.5
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
.|+|+|..++..+..++-.++..+=..|||.++...++..+.. .++..+++++|+..-+....+.++.+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-~~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-NKDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 6899999999887667777889999999998877544433332 224579999999988888877776544
No 286
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.015 Score=56.57 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=23.7
Q ss_pred CcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 172 RTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
..++++||||+|.+....+ +.+.+.++.-+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a~-NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAF-NAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHhcccCCCCeEEEEEE
Confidence 4578999999999866553 33444444444444555444
No 287
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.51 E-value=0.02 Score=47.14 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=18.7
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhh
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
+..++.||.|+|||..+...+....
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3578999999999977666554444
No 288
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.039 Score=52.20 Aligned_cols=119 Identities=17% Similarity=0.229 Sum_probs=58.5
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc-cc-HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS-PT-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-p~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (404)
.++.+.+.||+|+|||..+...+........ +.++.++. .+ +.-+ .++++.+....++.+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~-gkkVaLIdtDtyRigA---~EQLk~ya~iLgv~v~~a----------- 413 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHA-PRDVALVTTDTQRVGG---REQLHSYGRQLGIAVHEA----------- 413 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCceEEEecccccccH---HHHHHHhhcccCceeEec-----------
Confidence 3566788999999999887655544333221 12344443 22 2211 223333333333322111
Q ss_pred HHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccC-cHHHHHHHHhhCCCCceEEEEeeecc
Q 015595 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRG-FKDQIYDVYRYLPPDLQVVLISATLP 215 (404)
Q Consensus 147 ~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SAT~~ 215 (404)
.+++.+...+.. +...++||||..=...... ....+..+... .....+++++++..
T Consensus 414 ----------~d~~~L~~aL~~--l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss 470 (559)
T PRK12727 414 ----------DSAESLLDLLER--LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAH 470 (559)
T ss_pred ----------CcHHHHHHHHHH--hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCC
Confidence 122334444443 3457899999987543221 11222222222 23345777888865
No 289
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.49 E-value=0.027 Score=61.00 Aligned_cols=62 Identities=24% Similarity=0.288 Sum_probs=44.1
Q ss_pred CCcHHHHHhhhhhhcC--CcEEEEcCCCCchhhHhHHHHHhhhh--cCCCceeEEEEcccHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVD--TSSREVQALILSPTRELATQT 117 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~iv~a~tGsGKT~~~~~~~~~~~~--~~~~~~~~lil~p~~~L~~q~ 117 (404)
.+++.|.+++..++.+ +-++|.|..|+|||.+.-. +...+. ....+.+++.++||-.-+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~-v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRA-VMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHH-HHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 6899999999999875 4578999999999976433 222222 122234688899997655543
No 290
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.021 Score=51.03 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=28.6
Q ss_pred CcHHHHHhhhhhhc----C---CcEEEEcCCCCchhhHhHHHHHhhhh
Q 015595 56 PSAIQQRAVMPIIK----G---RDVIAQAQSGTGKTSMIALTVCQTVD 96 (404)
Q Consensus 56 ~~~~Q~~~~~~~~~----~---~~~iv~a~tGsGKT~~~~~~~~~~~~ 96 (404)
++|||+..|..+.+ + +..++.||.|.||+..+...+...+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 46777777766553 3 34679999999999877765544443
No 291
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.49 E-value=0.018 Score=51.93 Aligned_cols=39 Identities=8% Similarity=0.151 Sum_probs=26.6
Q ss_pred cccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 173 TRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
..+++|+||+|.+........+..+++..+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999998744434556677777766666666544
No 292
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.48 E-value=0.024 Score=54.04 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=26.9
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
.....++||||+|.+.... ...+...++.-++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4567899999999886544 445566666656666656554
No 293
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.47 E-value=0.038 Score=50.28 Aligned_cols=39 Identities=8% Similarity=0.203 Sum_probs=24.5
Q ss_pred CcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 172 RTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
...+++|+||+|.+.... ...+..++...+...++|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALREDA-QQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHHH-HHHHHHHHHhccCCCeEEEEe
Confidence 445789999999875432 345556666555556555543
No 294
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.07 Score=48.36 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=60.2
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc-c-HH-HHHHHHHHHHHHccccCeeEEEEEcCcchHHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP-T-RE-LATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p-~-~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (404)
++.+++.||+|+|||..+...+......+ .++.+++- + +. -..||.. +....++.+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~gAveQLk~----yae~lgvpv~~------------ 266 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSGAVEQFQG----YADKLDVELIV------------ 266 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCccHHHHHHH----HhhcCCCCEEe------------
Confidence 44578999999999987776555443332 23544442 2 21 2334333 33233332211
Q ss_pred HHhcCCCeEEeChHHHHHHHHccC-CCcccceEEecccccccc-CcHHHHHHHHhhCCCCceEEEEeeecch
Q 015595 147 KLEHGVHVVSGTPGRVCDMIKRKT-LRTRAIKLLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPH 216 (404)
Q Consensus 147 ~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 216 (404)
..+|+.+...+.... ....++|++|=+=+.... .....+..+.....+..-++.+||+...
T Consensus 267 ---------~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~ 329 (407)
T PRK12726 267 ---------ATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS 329 (407)
T ss_pred ---------cCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH
Confidence 234455544444322 245688888887654321 2233344444444444445667776543
No 295
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.43 E-value=0.021 Score=53.59 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=25.3
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~ 115 (404)
+.+++.||+|+|||..+... ...+... +.+++++.. ..+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai-~~~l~~~--~~~v~yi~~-~~f~~ 182 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAA-VHALRES--GGKILYVRS-ELFTE 182 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHH-HHHHHHc--CCCEEEeeH-HHHHH
Confidence 45899999999999665543 3333322 245777654 34443
No 296
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.052 Score=50.23 Aligned_cols=130 Identities=16% Similarity=0.191 Sum_probs=62.7
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (404)
++-+.+.||+|+|||+.....+.............++.+.+.-. ...+++..+....++.+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri--galEQL~~~a~ilGvp~~~v-------------- 254 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI--GGHEQLRIYGKLLGVSVRSI-------------- 254 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch--hHHHHHHHHHHHcCCceecC--------------
Confidence 44578999999999988765554333222222234455554222 22333444443444433221
Q ss_pred cCCCeEEeChHHHHHHHHccCCCcccceEEecccccccc-CcHHHHHHHHhhCCCCceEEEEeeecchH-HHHHHHh
Q 015595 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHE-ILEMTTK 224 (404)
Q Consensus 150 ~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~~~~ 224 (404)
.++..+...+. .+...+++++|.+=..... .....+..+.....+...++++|||.... +.+....
T Consensus 255 -------~~~~dl~~al~--~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~ 322 (420)
T PRK14721 255 -------KDIADLQLMLH--ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISA 322 (420)
T ss_pred -------CCHHHHHHHHH--HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHH
Confidence 22222222222 2456678888986322111 11223333322222334578899997554 3334433
No 297
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.40 E-value=0.017 Score=50.77 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=37.9
Q ss_pred HHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 44 LLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 44 ~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
+.++|...+..+-.+--.+++.-+..|.-+++.|++|+|||..+...+...+... +.+++|+.-
T Consensus 4 ~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~ 67 (271)
T cd01122 4 IREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISL 67 (271)
T ss_pred hhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEc
Confidence 4455554444322222222333455677789999999999987776666554441 235777764
No 298
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.027 Score=50.60 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=29.1
Q ss_pred CcHHHHHhhhhhhcC-----CcEEEEcCCCCchhhHhHHHHHhhh
Q 015595 56 PSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 56 ~~~~Q~~~~~~~~~~-----~~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
++|||+..|..+... +..++.||.|.|||..+...+...+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 368888888877642 3478999999999977666544433
No 299
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.39 E-value=0.023 Score=54.65 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=25.5
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
.....++||||+|.+.... .+.+.+.++..+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 3456899999999886544 334555555555555555554
No 300
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.38 E-value=0.024 Score=51.00 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=29.1
Q ss_pred CcHHHHHhhhhhhcC-----CcEEEEcCCCCchhhHhHHHHHhhh
Q 015595 56 PSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 56 ~~~~Q~~~~~~~~~~-----~~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
++|||...|+.+... +..++.||.|.||+..+...+...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 368888888776642 3568999999999987766554443
No 301
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.38 E-value=0.0096 Score=63.38 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=56.1
Q ss_pred CcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
+++-|..++. ..+++++|.|+.|||||.+..--++..+..+....+++++|=|++.+.++.+++.+..
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l 69 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEAL 69 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHH
Confidence 5889999997 4688999999999999999887777777655333569999999999999988887743
No 302
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.37 E-value=0.02 Score=55.16 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=56.8
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhc
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (404)
+.++|.|++|+|||..... +.+.+.....+.+++|+.. .++..++...+..
T Consensus 315 NpL~LyG~sGsGKTHLL~A-Ia~~a~~~~~g~~V~Yita-eef~~el~~al~~--------------------------- 365 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHA-IGHYARRLYPGTRVRYVSS-EEFTNEFINSIRD--------------------------- 365 (617)
T ss_pred CcEEEECCCCCCHHHHHHH-HHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHh---------------------------
Confidence 3489999999999966544 3333333333445766654 4455444333321
Q ss_pred CCCeEEeChHHHHHHHHccCCCcccceEEeccccccccC-cHHHHHHHHhhCC-CCceEEEEeeecchH
Q 015595 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRG-FKDQIYDVYRYLP-PDLQVVLISATLPHE 217 (404)
Q Consensus 151 ~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~-~~~~~i~~SAT~~~~ 217 (404)
...+.|.+ .+...+++||||+|.+.... ....+..+++.+. ...++|+.|-..+.+
T Consensus 366 ------~~~~~f~~-----~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 366 ------GKGDSFRR-----RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred ------ccHHHHHH-----HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 00111111 13456899999999876543 2233444444332 245566544444443
No 303
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.36 E-value=0.033 Score=53.02 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=18.0
Q ss_pred CcEEEEcCCCCchhhHhHHHHHh
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
+..+++||.|+|||.++-..+..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999877665443
No 304
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.071 Score=49.04 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=62.1
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc-cc-HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS-PT-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-p~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (404)
-+++.+|+|+|||+.+...+.......+ .++.++. .+ +..+. .+++.+....++....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G--~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~--------------- 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMG--KSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYP--------------- 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEecccchhhhHH---HHHHHHHHhcCCCeee---------------
Confidence 3678999999999887776654432222 2344443 32 23222 2333333232332211
Q ss_pred cCCCeEEeChHHHHHHHHccCCCcccceEEecccccc-ccCcHHHHHHHHhhCC---CCceEEEEeeecch-HHHHHHHh
Q 015595 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEML-SRGFKDQIYDVYRYLP---PDLQVVLISATLPH-EILEMTTK 224 (404)
Q Consensus 150 ~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~-~~~~~~~~~~~~~~~~---~~~~~i~~SAT~~~-~~~~~~~~ 224 (404)
+..+..+...+.. ...++|+||=+-... +......+..+..... +.-.++.+|||... .+......
T Consensus 285 ------~~~~~~l~~~l~~---~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~ 355 (432)
T PRK12724 285 ------VKDIKKFKETLAR---DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKA 355 (432)
T ss_pred ------hHHHHHHHHHHHh---CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 0012223333332 456889999765432 2223334444444431 22457889999877 44444443
No 305
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.027 Score=53.72 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=16.5
Q ss_pred EEEEcCCCCchhhHhHHHHHh
Q 015595 73 VIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~ 93 (404)
.++.||+|+|||.++...+..
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 499999999999887654433
No 306
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.34 E-value=0.01 Score=59.92 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=56.4
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC-CCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
.|++-|.+++.+ ....++|.|..|||||.+...-+.+.+... -...++|+++-|+.-+.++.+.+.+..
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 4 HLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred ccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 589999999975 356799999999999999888888777543 233579999999999999988887654
No 307
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.33 E-value=0.081 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=19.2
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhh
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
+-+.+.||||+|||+++...+....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHH
Confidence 3467899999999988777665443
No 308
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.043 Score=51.01 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=17.9
Q ss_pred cEEEEcCCCCchhhHhHHHHHhh
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQT 94 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~ 94 (404)
..++.||.|+|||.++...+...
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999998877654443
No 309
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.29 E-value=0.022 Score=51.34 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=29.8
Q ss_pred CCcHHHHHhhhhhhc----C---CcEEEEcCCCCchhhHhHHHHHhhh
Q 015595 55 KPSAIQQRAVMPIIK----G---RDVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~---~~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
.++|||+..|..+.+ + +..++.||.|.||+..+...+...+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLM 49 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHc
Confidence 357888888877653 2 3468999999999987776554444
No 310
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.28 E-value=0.14 Score=40.41 Aligned_cols=132 Identities=22% Similarity=0.267 Sum_probs=72.0
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEE---EcccHHHHHHHHHHHHHHccccCeeEEEEEcCc-----chHHH
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI---LSPTRELATQTEKVILAIGDFINIQAHACVGGK-----SVGED 144 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~li---l~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 144 (404)
+.|-.++|.|||.+++..++..+..+.+ +++ +-....-.+ ...++++ .++.......+. .....
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~---v~~vQFlKg~~~~gE--~~~l~~l---~~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYR---VGVVQFLKGGWKYGE--LKALERL---PNIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCe---EEEEEEeCCCCccCH--HHHHHhC---CCcEEEECCCCCccCCCChHHH
Confidence 5667788999999988888887766544 666 333211111 1123332 133332221111 00011
Q ss_pred HHHHhcCCCeEEeChHHHHHHHHc-cCCCcccceEEeccccccccC--cHHHHHHHHhhCCCCceEEEEeeecchHHHHH
Q 015595 145 IRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATLPHEILEM 221 (404)
Q Consensus 145 ~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~vIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~ 221 (404)
.... ...+...+. .....++++|+||+-.....+ -...+..+++..|...-+|+.+-.+++++.+.
T Consensus 77 ~~~a-----------~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 77 IAAA-----------AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred HHHH-----------HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 0000 111122121 124567999999998765543 34567777787777777887777778776665
Q ss_pred HH
Q 015595 222 TT 223 (404)
Q Consensus 222 ~~ 223 (404)
..
T Consensus 146 AD 147 (159)
T cd00561 146 AD 147 (159)
T ss_pred Cc
Confidence 43
No 311
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.27 E-value=0.019 Score=56.43 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=36.8
Q ss_pred cceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecc
Q 015595 175 AIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 215 (404)
Q Consensus 175 ~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 215 (404)
=++|+|+.|.+.+......+..++++.|.+...++.|-+-|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 47789999999999989999999999999999999988854
No 312
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.052 Score=53.83 Aligned_cols=129 Identities=15% Similarity=0.169 Sum_probs=64.6
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcC
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (404)
-+.+.||||+|||++....+.......+ +.++.++.--... .-..++++.+....++.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G-~kkV~lit~Dt~R-igA~eQL~~~a~~~gvpv~------------------ 246 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREG-ADQLALLTTDSFR-IGALEQLRIYGRILGVPVH------------------ 246 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcC-CCeEEEecCcccc-hHHHHHHHHHHHhCCCCcc------------------
Confidence 4678999999999887765544322221 1234444432111 1112334444333333221
Q ss_pred CCeEEeChHHHHHHHHccCCCcccceEEecccccccc-CcHHHHHHHHhhCCCCceEEEEeeecchH-HHHHHHhc
Q 015595 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHE-ILEMTTKF 225 (404)
Q Consensus 152 ~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~~~~~ 225 (404)
.+.+++.+.+.+.. +...++|+||=+=+.... .....+..+.....+.-.+++++||...+ +.+....|
T Consensus 247 ---~~~~~~~l~~al~~--~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 247 ---AVKDAADLRFALAA--LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred ---ccCCHHHHHHHHHH--hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 12355555555543 335578888887754322 22233333333334455678888887543 33344444
No 313
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.048 Score=51.66 Aligned_cols=174 Identities=16% Similarity=0.187 Sum_probs=86.1
Q ss_pred ccccccCCCCHHHHHHHHH---CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 32 ITSFDAMGIKDDLLRGIYQ---YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~---~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
..+|++.|--+.+...|.- ..+.+|-.|+.-.+. .-..++++||+|+|||+.+= ..++..+. -++-+
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLlAK------AVANEag~-NFisV 576 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLLAK------AVANEAGA-NFISV 576 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHHHH------HHhhhccC-ceEee
Confidence 3456666655555555433 122223333322222 12469999999999995432 22222211 34445
Q ss_pred ccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEecccccccc
Q 015595 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSR 188 (404)
Q Consensus 109 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~ 188 (404)
-.-+|.+-+.-+-++.. ...+.+.....--++.|||++.+.-.
T Consensus 577 KGPELlNkYVGESErAV-------------------------------------R~vFqRAR~saPCVIFFDEiDaL~p~ 619 (802)
T KOG0733|consen 577 KGPELLNKYVGESERAV-------------------------------------RQVFQRARASAPCVIFFDEIDALVPR 619 (802)
T ss_pred cCHHHHHHHhhhHHHHH-------------------------------------HHHHHHhhcCCCeEEEecchhhcCcc
Confidence 55566554433322210 12222222222234458999987422
Q ss_pred -------CcHHHHHHHHhhC---CCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCc-eEEEEEecCchhH
Q 015595 189 -------GFKDQIYDVYRYL---PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGI-KQFFVAVEREEWK 257 (404)
Q Consensus 189 -------~~~~~~~~~~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 257 (404)
...+.++.++-.+ .....+.++.||-.+++.+-.. ..+..+ ...|..+++...+
T Consensus 620 R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAi---------------LRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 620 RSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAI---------------LRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred cCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhh---------------cCCCccCceeeecCCCHHHH
Confidence 2234444444433 3456788899997665333211 112222 2344556666667
Q ss_pred HHHHHhhhhc
Q 015595 258 FDTLCDLYDT 267 (404)
Q Consensus 258 ~~~l~~~l~~ 267 (404)
.+.|..+.++
T Consensus 685 ~~ILK~~tkn 694 (802)
T KOG0733|consen 685 VAILKTITKN 694 (802)
T ss_pred HHHHHHHhcc
Confidence 7777777665
No 314
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.038 Score=49.21 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=29.8
Q ss_pred CCcHHHHHhhhhhhc----C---CcEEEEcCCCCchhhHhHHHHHhhh
Q 015595 55 KPSAIQQRAVMPIIK----G---RDVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~---~~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
.++|||...+..+.+ + +..++.||.|.||+..+...+...+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc
Confidence 467888888877654 3 3578999999999977666554444
No 315
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.23 E-value=0.079 Score=46.32 Aligned_cols=132 Identities=18% Similarity=0.268 Sum_probs=65.0
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc-c-cHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS-P-TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-p-~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (404)
+-+++.+++|+|||.++...+...... +.+++++. . .+.-+. +++..+....++.+.....+.+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~~dp~------ 140 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEGADPA------ 140 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCCCCHH------
Confidence 346788999999998877666544322 23466555 2 222221 223333323333322111111110
Q ss_pred hcCCCeEEeChHHHHHHHHccCCCcccceEEecccccccc-CcHHHHHHHHhhCC------CCceEEEEeeecchHHHHH
Q 015595 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSR-GFKDQIYDVYRYLP------PDLQVVLISATLPHEILEM 221 (404)
Q Consensus 149 ~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~------~~~~~i~~SAT~~~~~~~~ 221 (404)
......+.......++++|+|=+-..... .....+..+.+..+ +.-.++.++|+...+....
T Consensus 141 -----------~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~ 209 (272)
T TIGR00064 141 -----------AVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQ 209 (272)
T ss_pred -----------HHHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHH
Confidence 11112122222345688888888765432 22334444444433 4556788999876654444
Q ss_pred HHhc
Q 015595 222 TTKF 225 (404)
Q Consensus 222 ~~~~ 225 (404)
...+
T Consensus 210 ~~~f 213 (272)
T TIGR00064 210 AKVF 213 (272)
T ss_pred HHHH
Confidence 4443
No 316
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.19 E-value=0.025 Score=53.05 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=53.2
Q ss_pred CCcHHHHHhhhhhhc------C----CcEEEEcCCCCchhhHhHHHH-HhhhhcCCCceeEEEEcccHHHHHHHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIK------G----RDVIAQAQSGTGKTSMIALTV-CQTVDTSSREVQALILSPTRELATQTEKVILA 123 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~------~----~~~iv~a~tGsGKT~~~~~~~-~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 123 (404)
.+-|||.-++..+.- + +.++|..|-+-|||..++..+ ...+.....+..+.++.|+.+-+.+.+..++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 689999999988772 1 346899999999997766333 33444445566799999999888888887776
Q ss_pred Hc
Q 015595 124 IG 125 (404)
Q Consensus 124 ~~ 125 (404)
..
T Consensus 141 mv 142 (546)
T COG4626 141 MV 142 (546)
T ss_pred HH
Confidence 54
No 317
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.19 E-value=0.032 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=18.2
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhh
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQT 94 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~ 94 (404)
+..++.||.|+|||..+...+...
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999998776654443
No 318
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.18 E-value=0.0057 Score=50.48 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=25.1
Q ss_pred CcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEE
Q 015595 172 RTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 210 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 210 (404)
....++|+||++.+-... ...+++.++...+..++.+.
T Consensus 112 grhKIiILDEADSMT~gA-QQAlRRtMEiyS~ttRFala 149 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAGA-QQALRRTMEIYSNTTRFALA 149 (333)
T ss_pred CceeEEEeeccchhhhHH-HHHHHHHHHHHcccchhhhh
Confidence 456788999999875543 55666666666555554443
No 319
>PRK05973 replicative DNA helicase; Provisional
Probab=96.16 E-value=0.014 Score=49.52 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=52.8
Q ss_pred cccCCCCHHHHHHHHHCCCCC----------CcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeE
Q 015595 35 FDAMGIKDDLLRGIYQYGFEK----------PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA 104 (404)
Q Consensus 35 ~~~~~l~~~~~~~l~~~~~~~----------~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~ 104 (404)
=...++++.+-+.-.+.||.. ++|.. +..--+..|.-++|.|++|+|||..++..+.+.+..+ .++
T Consensus 20 ~~~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G---e~v 95 (237)
T PRK05973 20 AQNIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSG---RTG 95 (237)
T ss_pred hcCCcHHHHHHHHHHHhccchHHHHHHhccCCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeE
Confidence 345567777766666677742 33311 2223344566789999999999988777666665443 347
Q ss_pred EEEcccHHHHHHHHHHHHHH
Q 015595 105 LILSPTRELATQTEKVILAI 124 (404)
Q Consensus 105 lil~p~~~L~~q~~~~~~~~ 124 (404)
+|++-- +-..|..+.+..+
T Consensus 96 lyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 96 VFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred EEEEEe-CCHHHHHHHHHHc
Confidence 777643 2255666666554
No 320
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.16 E-value=0.033 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=17.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHHh
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
+..+++||.|+|||.++-..+..
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34688999999999777665443
No 321
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.046 Score=53.32 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=25.4
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
....+++||||+|.+.... .+.+...++.-+....+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 4567899999999876544 345555556545555555444
No 322
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.15 E-value=0.041 Score=53.61 Aligned_cols=40 Identities=10% Similarity=0.264 Sum_probs=26.4
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
+...+++||||+|.+.... .+.+.+.++.-+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999886544 344555555555566666554
No 323
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.15 E-value=0.028 Score=47.88 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=35.9
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhc-CCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
.|..+++.|++|+|||..++..+.+.+.. +.+ ++|++-. +-..+..+.++.++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~---vlyvs~e-e~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEK---VLYVSFE-EPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESS-S-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCc---EEEEEec-CCHHHHHHHHHHcC
Confidence 34668999999999998888777777766 554 8887743 33455555555543
No 324
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.15 E-value=0.029 Score=52.85 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=33.9
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
+.-+++.+++|+|||...+..+...... +.+++|+.-. +-..|.....++++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~E-es~~qi~~ra~rlg 131 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGE-ESASQIKLRAERLG 131 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcc-ccHHHHHHHHHHcC
Confidence 4457899999999998776655554422 3458888753 34556555555443
No 325
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.14 E-value=0.022 Score=50.38 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=27.4
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~ 122 (404)
.+.|+.+|+|+|||..+-+.+... . ...-+.+=+..+.+-.++..+.++
T Consensus 163 pSmIlWGppG~GKTtlArlia~ts-k--~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTS-K--KHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhc-C--CCceEEEEEeccccchHHHHHHHH
Confidence 367999999999996654433211 1 112234445555554555444443
No 326
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.13 E-value=0.034 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=17.1
Q ss_pred cEEEEcCCCCchhhHhHHHHHh
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
..++.||.|+|||.++...+..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999776664433
No 327
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.11 E-value=0.021 Score=50.95 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=40.4
Q ss_pred HHHHHCCCCCCcHHHHHhhhhhh-cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHH
Q 015595 46 RGIYQYGFEKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (404)
Q Consensus 46 ~~l~~~~~~~~~~~Q~~~~~~~~-~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L 113 (404)
+.+.+.|. +.+.|...+..+. .+.+++++|+||||||...- +++..+.......+++.+=...+|
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~-aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLAN-AVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHHHhcCCCCceEEEecCCccc
Confidence 34445555 5677776665544 46789999999999996643 344444322333456666656664
No 328
>PRK10867 signal recognition particle protein; Provisional
Probab=96.08 E-value=0.083 Score=49.22 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=22.5
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
+++++++|+|||+++.-.+....... +.+++++.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~--G~kV~lV~ 136 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKK--KKKVLLVA 136 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhc--CCcEEEEE
Confidence 57899999999988776665544331 22355444
No 329
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.04 Score=53.84 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=24.7
Q ss_pred CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 170 TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 170 ~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
.+....++||||+|.+.... ...+...++.-+....+|+++
T Consensus 124 ~~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred hcCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 34567899999999986543 334444455544444444444
No 330
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.05 E-value=0.026 Score=54.17 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=35.1
Q ss_pred cccccccccCCCCHHHHHHHHHCC--CCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 29 VEAITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
..+..+|+++.-.+.+.+.+.+.- +..+..++... ....+++++.||+|+|||..+-.
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~a 107 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLAKA 107 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHHHH
Confidence 356678999877777766655421 11222232221 11235799999999999966443
No 331
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.04 E-value=0.14 Score=41.48 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhHhHHHHHhhh
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
+++.+++|+|||..+...+....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999988766554443
No 332
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.02 E-value=0.14 Score=44.77 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=23.5
Q ss_pred CCcHHHHHhhhhhh----cCC-cEEEEcCCCCchhhHhHHH
Q 015595 55 KPSAIQQRAVMPII----KGR-DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~-~~iv~a~tGsGKT~~~~~~ 90 (404)
.+.+.+.+++..+. .+. .+++.|++|+|||+.+-..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 34555555655443 223 5789999999999765543
No 333
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.02 E-value=0.026 Score=54.30 Aligned_cols=132 Identities=11% Similarity=0.108 Sum_probs=79.1
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHcccc--CeeEEEEEcCcchHHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI--NIQAHACVGGKSVGEDIR 146 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 146 (404)
+.+..++..|=-.|||+... +++..+.....+.+++|++|.+..++..++++....... +..+..+.| ... .-
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i 327 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SF 327 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EE
Confidence 34667899999999998766 444444444446689999999999999999988765422 111111111 111 00
Q ss_pred HHhcC--CCeEEeChHHHHHHHHc--cCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeec
Q 015595 147 KLEHG--VHVVSGTPGRVCDMIKR--KTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 214 (404)
Q Consensus 147 ~~~~~--~~iiv~T~~~l~~~l~~--~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 214 (404)
.+.++ ..|.+.+. ... ..-..++++|+|||+.+....+...+ -.+.. .++++|++|.|-
T Consensus 328 ~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~N 390 (738)
T PHA03368 328 SFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSSTN 390 (738)
T ss_pred EecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecCC
Confidence 01112 13333321 111 12347899999999987766544444 33333 478899999884
No 334
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.02 E-value=0.034 Score=52.52 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=55.2
Q ss_pred HHHHHHHHCCCCC-------CcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCC---CceeEEEEcccHH
Q 015595 43 DLLRGIYQYGFEK-------PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILSPTRE 112 (404)
Q Consensus 43 ~~~~~l~~~~~~~-------~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~p~~~ 112 (404)
-++..|++..-.+ .-+-|-+++.. -.++-.+|+|..|||||.+++.-++..+.... .+..++++.|.+-
T Consensus 193 vL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~v 271 (747)
T COG3973 193 VLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRV 271 (747)
T ss_pred HHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHH
Confidence 3456776644333 34445555532 23456789999999999999887777663321 1234999999999
Q ss_pred HHHHHHHHHHHHc
Q 015595 113 LATQTEKVILAIG 125 (404)
Q Consensus 113 L~~q~~~~~~~~~ 125 (404)
...-....+-.++
T Consensus 272 FleYis~VLPeLG 284 (747)
T COG3973 272 FLEYISRVLPELG 284 (747)
T ss_pred HHHHHHHhchhhc
Confidence 8888777776655
No 335
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.01 E-value=0.046 Score=51.91 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=30.6
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 31 AITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..+|++++--+..++.+.+. .+..+-.++...+ ...+.+++.||+|+|||+.+-.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl---~~p~GILLyGPPGTGKT~LAKA 235 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL---KPPKGVLLYGPPGCGKTLIAKA 235 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC---CCCcceEEECCCCCcHHHHHHH
Confidence 345677776333333444332 2222322332222 2346799999999999976443
No 336
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.01 E-value=0.014 Score=56.56 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=54.1
Q ss_pred CCcHHHHHhhhhhhcC--CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHH-HHHHHHc
Q 015595 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE-KVILAIG 125 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~-~~~~~~~ 125 (404)
..+|||.+.+..+... +.+.+..++-+|||.+.+.++...+...+ ..+|++.|+...+..+. ..+..+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P--~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDP--GPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCC--CCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 5789999999988764 57899999999999977776666665543 35999999999998876 4455443
No 337
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.00 E-value=0.048 Score=49.89 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=32.8
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
|.-+++.+++|+|||...+..+......+ .+++|+.-. +-..|......++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g---~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRG---GKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEECC-cCHHHHHHHHHHc
Confidence 45578999999999987766555444332 358888754 3345555544443
No 338
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.98 E-value=0.09 Score=48.97 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhHhHHHHHhh
Q 015595 73 VIAQAQSGTGKTSMIALTVCQT 94 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~ 94 (404)
+++++++|+|||+++.-.+...
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6789999999998877666553
No 339
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.97 E-value=0.092 Score=46.72 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhh
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
++++++.|++|+|||..+...+...+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999987665444444
No 340
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.93 E-value=0.037 Score=51.16 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=36.9
Q ss_pred ccccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 30 EAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.|..+|.+.+-.+.+.+.+.+. .+..|..++...+ ...+.+++.||+|+|||+.+-.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~LAka 198 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTMLAKA 198 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHHHH
Confidence 4556788887777777766653 2333333333222 2457899999999999976543
No 341
>PF05729 NACHT: NACHT domain
Probab=95.93 E-value=0.077 Score=42.41 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=19.1
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcC
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTS 98 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~ 98 (404)
-++|.|++|+|||......+.......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 368999999999977665554444443
No 342
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.91 E-value=0.064 Score=59.62 Aligned_cols=61 Identities=31% Similarity=0.408 Sum_probs=43.5
Q ss_pred CCcHHHHHhhhhhhcC--CcEEEEcCCCCchhhHhH---HHHHhhhhcCCCceeEEEEcccHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIA---LTVCQTVDTSSREVQALILSPTRELATQT 117 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~iv~a~tGsGKT~~~~---~~~~~~~~~~~~~~~~lil~p~~~L~~q~ 117 (404)
.+++.|+.++..++.+ +-++|.|+.|+|||.+.. -++...... .+.+++.++||..-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHH
Confidence 6899999999998865 456889999999997652 222333222 234688899997655554
No 343
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.083 Score=49.33 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=29.3
Q ss_pred HHHHccCCCcccceEEeccccccccC------c-HHHHHHHH---hhCCCCceEEEEeeecchH
Q 015595 164 DMIKRKTLRTRAIKLLDESDEMLSRG------F-KDQIYDVY---RYLPPDLQVVLISATLPHE 217 (404)
Q Consensus 164 ~~l~~~~~~~~~~vIiDE~h~~~~~~------~-~~~~~~~~---~~~~~~~~~i~~SAT~~~~ 217 (404)
+++....-...-+|.|||.+.+...- | ...+..++ .-+.++-.+|++.||--++
T Consensus 387 dLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 387 DLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred HHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 44443333233344589999875432 1 12233333 3334566799999996554
No 344
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.057 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=17.2
Q ss_pred cEEEEcCCCCchhhHhHHHHHh
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
..++.||.|+|||.++...+..
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~ 61 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKA 61 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3589999999999877665433
No 345
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.90 E-value=0.073 Score=49.63 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEE
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (404)
.++++.||+|+|||.+.-..+ ..+.....+..++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~-~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVF-EELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHH-HHHHHhcCCcEEEEE
Confidence 568999999999997655433 333222222345555
No 346
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.89 E-value=0.026 Score=50.47 Aligned_cols=66 Identities=20% Similarity=0.392 Sum_probs=41.4
Q ss_pred HHHHHHCCCCCCcHHHHHhhhh-hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHH
Q 015595 45 LRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (404)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L 113 (404)
.+.+.+.|. +.+.|.+.+.. +..+++++++|+||||||...- +++..+....+..+++.+-.+.++
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~-aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVN-AIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHhhhhcCCCceEEEEcCCCcc
Confidence 345555565 56777777665 4457789999999999995543 333332222233457777666665
No 347
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.88 E-value=0.025 Score=48.20 Aligned_cols=84 Identities=19% Similarity=0.263 Sum_probs=60.0
Q ss_pred CceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCc-chHHHHHHHh-cCCCeEEeChHHHHHHHHcc--CCCccc
Q 015595 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGK-SVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK--TLRTRA 175 (404)
Q Consensus 100 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~iiv~T~~~l~~~l~~~--~~~~~~ 175 (404)
..+.+||||.+.-.+-++.+.++.+. .-+..+..+..-. ...++...+. ....|.||||+++..+++.. .++...
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 45789999998777888888887753 1123333444333 5556666665 36899999999999999876 456778
Q ss_pred ceEEecccc
Q 015595 176 IKLLDESDE 184 (404)
Q Consensus 176 ~vIiDE~h~ 184 (404)
+||||--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998774
No 348
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.88 E-value=0.039 Score=48.95 Aligned_cols=66 Identities=20% Similarity=0.392 Sum_probs=40.5
Q ss_pred HHHHHHCCCCCCcHHHHHhhhh-hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHH
Q 015595 45 LRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (404)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L 113 (404)
.+.+.+.|. +.+.|...+.. +..+++++++|+||||||...- +++..+.......+++.+=...++
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~-al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLAN-ALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHHhhccCCCceEEEECCchhh
Confidence 344445554 44555555544 4446789999999999996643 344555443333467777666665
No 349
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.063 Score=52.12 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=18.9
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhh
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
...++.+|.|+|||.++...+....
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcc
Confidence 3478899999999988776554443
No 350
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.83 E-value=0.019 Score=49.49 Aligned_cols=29 Identities=10% Similarity=0.295 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCC
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSR 100 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~ 100 (404)
.-++|.||||||||.. +.++...+.+...
T Consensus 126 GLILVTGpTGSGKSTT-lAamId~iN~~~~ 154 (353)
T COG2805 126 GLILVTGPTGSGKSTT-LAAMIDYINKHKA 154 (353)
T ss_pred ceEEEeCCCCCcHHHH-HHHHHHHHhccCC
Confidence 3478999999999965 4456666655543
No 351
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.82 E-value=0.11 Score=52.00 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=14.9
Q ss_pred EEEEcCCCCchhhHhHHHH
Q 015595 73 VIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~ 91 (404)
++|.|+||+|||.+.-..+
T Consensus 784 LYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3599999999997765543
No 352
>PRK04195 replication factor C large subunit; Provisional
Probab=95.81 E-value=0.06 Score=51.53 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
.+.+++.||+|+|||..+...
T Consensus 39 ~~~lLL~GppG~GKTtla~al 59 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHAL 59 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 457899999999999765543
No 353
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.81 E-value=0.2 Score=44.14 Aligned_cols=132 Identities=16% Similarity=0.239 Sum_probs=73.5
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCC
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGV 152 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (404)
+++.|-.|+|||+...-.+......+. ++++.+-- .-..-..++++.++...+..+.....|.+...
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~---~VllaA~D-TFRAaAiEQL~~w~er~gv~vI~~~~G~DpAa--------- 208 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGK---SVLLAAGD-TFRAAAIEQLEVWGERLGVPVISGKEGADPAA--------- 208 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCC---eEEEEecc-hHHHHHHHHHHHHHHHhCCeEEccCCCCCcHH---------
Confidence 578999999999887765544443332 35554432 12222233444444455566554322222110
Q ss_pred CeEEeChHHHHHHHHccCCCcccceEEecccccccc-CcHHHHHHHHhhCCCCc------eEEEEeeecchHHHHHHHhc
Q 015595 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSR-GFKDQIYDVYRYLPPDL------QVVLISATLPHEILEMTTKF 225 (404)
Q Consensus 153 ~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~------~~i~~SAT~~~~~~~~~~~~ 225 (404)
-.++-++...-..++++++|=+=++-+. .....+..+.+.+.+.. -++.+-||..++.....+.|
T Consensus 209 --------VafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F 280 (340)
T COG0552 209 --------VAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF 280 (340)
T ss_pred --------HHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH
Confidence 1123344445567788889988887655 34455666666554433 34555899877766655544
No 354
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=95.79 E-value=0.036 Score=45.80 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=16.7
Q ss_pred EEEEcCCCCchhhHhHHH-HHhhhhc
Q 015595 73 VIAQAQSGTGKTSMIALT-VCQTVDT 97 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~-~~~~~~~ 97 (404)
.+++|.+|||||+.++.. +...+.+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~ 28 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKK 28 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhC
Confidence 478999999999887776 5555544
No 355
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.78 E-value=0.016 Score=48.23 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 015595 71 RDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~ 89 (404)
.++++.||+|.|||..+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 3689999999999976554
No 356
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.77 E-value=0.15 Score=50.31 Aligned_cols=150 Identities=15% Similarity=0.252 Sum_probs=87.2
Q ss_pred HHHHHCCCCCCcHHHHHhhhhhhcCC--cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHH
Q 015595 46 RGIYQYGFEKPSAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (404)
Q Consensus 46 ~~l~~~~~~~~~~~Q~~~~~~~~~~~--~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 123 (404)
..+..........-|.+.+..+++.+ -+++.|+=|=|||.+.=+++........ ..++++..|+.+-++...+.+.+
T Consensus 205 ~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~Lf~fa~~ 283 (758)
T COG1444 205 RELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQTLFEFAGK 283 (758)
T ss_pred HHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHHHHHHHHH
Confidence 33444455556666666777777653 4788999999999765554422222222 45799999999988887777766
Q ss_pred HccccCeeEEEEEcCcchHHHHHHH-hcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCC
Q 015595 124 IGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLP 202 (404)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~ 202 (404)
-...+|.+......... .+... .+...|-+.+|.... ..-+++|+|||=.+ -.+.+..+....
T Consensus 284 ~l~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~--------~~~DllvVDEAAaI----plplL~~l~~~~- 347 (758)
T COG1444 284 GLEFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ--------EEADLLVVDEAAAI----PLPLLHKLLRRF- 347 (758)
T ss_pred hHHHhCCcccccccccc---ceeeecCCceeEEeeCcchhc--------ccCCEEEEehhhcC----ChHHHHHHHhhc-
Confidence 54444433222111100 00000 112234455554332 11689999999865 345555665543
Q ss_pred CCceEEEEeeecc
Q 015595 203 PDLQVVLISATLP 215 (404)
Q Consensus 203 ~~~~~i~~SAT~~ 215 (404)
+.++||.|..
T Consensus 348 ---~rv~~sTTIh 357 (758)
T COG1444 348 ---PRVLFSTTIH 357 (758)
T ss_pred ---CceEEEeeec
Confidence 3688898963
No 357
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.028 Score=56.98 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=82.5
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCC-CcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEE
Q 015595 28 GVEAITSFDAMGIKDDLLRGIYQYGFEK-PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (404)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~-~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~li 106 (404)
.......|++.+....++..|+++-+.. ++|-+..-+ .+..-+.+++.+|+|+|||+++-..+.+......+ +.+
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~k---isf 332 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMARALAAACSRGNRK---ISF 332 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHHHhhhhhhcccccc---cch
Confidence 3455567999998888888888875532 233222211 23445779999999999997765544433222211 110
Q ss_pred EcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCC-cccceEEeccccc
Q 015595 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLR-TRAIKLLDESDEM 185 (404)
Q Consensus 107 l~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~-~~~~vIiDE~h~~ 185 (404)
..++ + ... -.--|+.+++=++++....-. ...++.+||++-+
T Consensus 333 -------------fmrk-----g---------aD~----------lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGl 375 (1080)
T KOG0732|consen 333 -------------FMRK-----G---------ADC----------LSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGL 375 (1080)
T ss_pred -------------hhhc-----C---------chh----------hccccCcHHHHHHHHHHHHhccCceEEeccccccc
Confidence 0000 0 000 011144444444444433222 2345558999954
Q ss_pred ccc----------CcHHHHHHHHhhCCCCceEEEEeeecchH
Q 015595 186 LSR----------GFKDQIYDVYRYLPPDLQVVLISATLPHE 217 (404)
Q Consensus 186 ~~~----------~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 217 (404)
.-. +....+..++.-++...|+++++||..++
T Consensus 376 apvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 376 APVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred cccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 211 13345556666667788999999996443
No 358
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.75 E-value=0.024 Score=49.94 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=19.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhh
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVD 96 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~ 96 (404)
+.+++.||||+|||..+...+.....
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35778999999999887766555443
No 359
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.75 E-value=0.091 Score=44.78 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=31.7
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 123 (404)
.|..+++.+++|+|||..+...+.+.+..+ ..++++.- .+...+..+..+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g---~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDG---DPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcC---CeEEEEEc-cCCHHHHHHHHHH
Confidence 456789999999999977766555554433 34777764 2233444444433
No 360
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.73 E-value=0.072 Score=53.28 Aligned_cols=76 Identities=22% Similarity=0.329 Sum_probs=64.5
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-cccCCCCCCCCEEE
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WARGLDVQQVSLVI 343 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~~~Gid~p~~~~vi 343 (404)
.+.+++|.++++.-|.+.++.+++. ++.+..++|+++..+|.+.+..+.+|+.+|+|+|.. +...+.+.++..||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 4568999999999999888777653 688999999999999999999999999999999964 44567788888776
Q ss_pred E
Q 015595 344 N 344 (404)
Q Consensus 344 ~ 344 (404)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 3
No 361
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.70 E-value=0.073 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=16.6
Q ss_pred cEEEEcCCCCchhhHhHHHHHh
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
..++.||+|+|||..+...+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999766554433
No 362
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.65 E-value=0.063 Score=46.83 Aligned_cols=119 Identities=17% Similarity=0.206 Sum_probs=57.3
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCC----CceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~----~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (404)
.+.++.|+++.|||.++--.....-.... .-+.+.+-+|...-....+..+-... +.... .........
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---gaP~~---~~~~~~~~~- 134 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GAPYR---PRDRVAKLE- 134 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh---CcccC---CCCCHHHHH-
Confidence 47899999999999765433322221111 11345555665544444443333211 11110 001110000
Q ss_pred HHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcH--HHHHHHHhhCCCCc--eEEEEeee
Q 015595 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFK--DQIYDVYRYLPPDL--QVVLISAT 213 (404)
Q Consensus 147 ~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~--~~~~~~~~~~~~~~--~~i~~SAT 213 (404)
....+++.. -...++||||+|.++..... ..+...++.+.+.. .+|+ -+|
T Consensus 135 -------------~~~~~llr~---~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~-vGt 188 (302)
T PF05621_consen 135 -------------QQVLRLLRR---LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVG-VGT 188 (302)
T ss_pred -------------HHHHHHHHH---cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEE-ecc
Confidence 112244443 34589999999998665432 34445555554443 3443 355
No 363
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.64 E-value=0.08 Score=51.95 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=18.4
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhh
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQT 94 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~ 94 (404)
...++.||.|+|||.++...+...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHh
Confidence 456899999999998776655443
No 364
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.64 E-value=0.1 Score=52.67 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=17.9
Q ss_pred CcEEEEcCCCCchhhHhHHHHHh
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
.+.++.||+|+|||..+-..+..
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999775544433
No 365
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.60 E-value=0.047 Score=51.14 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
.++++.||+|+|||..+-..
T Consensus 37 ~~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARII 56 (413)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999765543
No 366
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.59 E-value=0.32 Score=39.67 Aligned_cols=144 Identities=14% Similarity=0.116 Sum_probs=74.4
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (404)
....+.+..++|.|||.+++..++..+..+.+ ++++==.+.-.. ..+...+....++.......+.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~---V~ivQFlKg~~~--~GE~~~l~~l~~v~~~~~g~~~~~~~----- 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKK---VGVVQFIKGAWS--TGERNLLEFGGGVEFHVMGTGFTWET----- 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCe---EEEEEEecCCCc--cCHHHHHhcCCCcEEEECCCCCcccC-----
Confidence 45689999999999999988888888766654 555432221100 01111111111232222111100000
Q ss_pred hcCCCeEEeChHHHHHHHHcc-CCCcccceEEeccccccccCc--HHHHHHHHhhCCCCceEEEEeeecchHHHHHHH
Q 015595 149 EHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 223 (404)
Q Consensus 149 ~~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 223 (404)
....--.......+...... .-..++++|+||+-...+.++ ...+..+++..|...-+|+..-.+++++.+...
T Consensus 91 -~~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 91 -QDRERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 00000000111112222221 235679999999988766543 355667777777777777666667776666543
No 367
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.58 E-value=0.13 Score=47.72 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=27.1
Q ss_pred CcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+......++..+..++++++.||+|+|||..+-.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 4555566677777889999999999999977654
No 368
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.58 E-value=0.055 Score=53.93 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
.++++.||+|+|||..+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARII 72 (725)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999765543
No 369
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.57 E-value=0.078 Score=47.91 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=26.2
Q ss_pred CcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEee
Q 015595 172 RTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 212 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 212 (404)
....++|+||++.+.... ...+...+..-+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~~A-~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTEDA-ANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHHH-HHHHHHHhccCCCCeEEEEEcC
Confidence 457899999999876543 4556666666555555555443
No 370
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.56 E-value=0.18 Score=45.87 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=27.3
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeee
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 213 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 213 (404)
.....++||||+|.+.... .+.+.+.++.-+....++++|..
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECC
Confidence 3456899999999986554 44566666665555555665533
No 371
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.54 E-value=0.26 Score=39.50 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=37.2
Q ss_pred CcccceEEeccccccccC--cHHHHHHHHhhCCCCceEEEEeeecchHHHHHHH
Q 015595 172 RTRAIKLLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 223 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 223 (404)
..++++|+||+-...+.+ ....+..+++..|...-+|+..-.+|+++.++..
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 567999999998766554 2345667777777777777777777777666543
No 372
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.53 E-value=0.2 Score=45.07 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=24.3
Q ss_pred cccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 173 TRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
..+++++||+|.+.... ...+...++..+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 35688999999875433 345555666655566666544
No 373
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.3 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=17.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHHh
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
.++++.|+||+|||.+.-..+-+
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~ 65 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEE 65 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHH
Confidence 46899999999999776654433
No 374
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.48 E-value=0.087 Score=44.53 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=23.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~ 115 (404)
+++++.+|+|+|||. +....++.... -++.+...+|.-
T Consensus 152 knVLFyGppGTGKTm------~Akalane~kv-p~l~vkat~liG 189 (368)
T COG1223 152 KNVLFYGPPGTGKTM------MAKALANEAKV-PLLLVKATELIG 189 (368)
T ss_pred ceeEEECCCCccHHH------HHHHHhcccCC-ceEEechHHHHH
Confidence 789999999999993 33333333323 345555455543
No 375
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.47 E-value=0.042 Score=50.19 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=26.2
Q ss_pred CcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeec
Q 015595 172 RTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 214 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 214 (404)
....++||||+|.+.... .+.+.+.++.-+....+|++|..+
T Consensus 140 ~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 140 GGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred CCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCc
Confidence 456788999999875444 445556666544455555555443
No 376
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.47 E-value=0.12 Score=44.20 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
+.-+++.|++|+|||..+...+...+.. +.+++|+.-... ..+..+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~-~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENT-SKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCC-HHHHHHHHHHCC
Confidence 4567899999999998777666655543 335777776433 445555555543
No 377
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.46 E-value=0.14 Score=51.20 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=62.3
Q ss_pred CCeEEEEecchhhHHHHHHHHhhC-CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEc
Q 015595 270 ITQAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINY 345 (404)
Q Consensus 270 ~~k~lIf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~ 345 (404)
+.++||.+++++.+.++.+.|++. +..+..+||+++..+|.+......+|+.+|+|+|.... -..+.++..+|.-
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvD 265 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVD 265 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEE
Confidence 568999999999999999999874 77899999999999999888888999999999997432 2456677766643
No 378
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.45 E-value=0.41 Score=43.66 Aligned_cols=109 Identities=13% Similarity=0.167 Sum_probs=57.5
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (404)
.+.+.+.|+.|.|||+..-+.. +.+.. +.+.| ++.-+...+....+.+.. ++...
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~-~~lp~-~~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~-------- 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFY-DSLPI-KRKRR----VHFHEFMLDVHSRLHQLR-----------GQDDP-------- 116 (362)
T ss_pred CceEEEECCCCCchhHHHHHHH-HhCCc-ccccc----ccccHHHHHHHHHHHHHh-----------CCCcc--------
Confidence 4678999999999997655432 22222 12222 233455666666665543 11111
Q ss_pred cCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhC-CCCceEEEEeeecchH
Q 015595 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATLPHE 217 (404)
Q Consensus 150 ~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~ 217 (404)
+ ............+++|||+|- .+-.-...+.++++.+ ....-+|+.|-++|.+
T Consensus 117 ------------l-~~va~~l~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 117 ------------L-PQVADELAKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred ------------H-HHHHHHHHhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 0 001111133445788999995 3333233444444433 3566777777777654
No 379
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=0.075 Score=51.54 Aligned_cols=139 Identities=22% Similarity=0.289 Sum_probs=73.0
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEE-EEcccHHHHHHHHHHHHHHccccCeeEEEEEcC-------
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL-ILSPTRELATQTEKVILAIGDFINIQAHACVGG------- 138 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~l-il~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~------- 138 (404)
+..|+.+.+.||.|+|||.++.+ +.+.+..... +++ ==+|-+++-.. .+++.....+-...+..+.
T Consensus 491 i~pGe~vALVGPSGsGKSTiasL-L~rfY~PtsG--~IllDG~~i~~~~~~---~lr~~Ig~V~QEPvLFs~sI~eNI~Y 564 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASL-LLRFYDPTSG--RILLDGVPISDINHK---YLRRKIGLVGQEPVLFSGSIRENIAY 564 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHH-HHHhcCCCCC--eEEECCeehhhcCHH---HHHHHeeeeeccceeecccHHHHHhc
Confidence 34578899999999999988765 3344333322 222 12343443333 3333221211112222211
Q ss_pred --c-chH-------------HHHHHHhcCCCeEEeChHHHHH-------HHHccCCCcccceEEeccccccccCcHHHHH
Q 015595 139 --K-SVG-------------EDIRKLEHGVHVVSGTPGRVCD-------MIKRKTLRTRAIKLLDESDEMLSRGFKDQIY 195 (404)
Q Consensus 139 --~-~~~-------------~~~~~~~~~~~iiv~T~~~l~~-------~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~ 195 (404)
. ... +-+.++.++++-.|+..+..+. -+.+..+.+..++|+|||-..++......+.
T Consensus 565 G~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq 644 (716)
T KOG0058|consen 565 GLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQ 644 (716)
T ss_pred CCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHH
Confidence 1 111 1122333445555554422221 1223346677888999999999988888888
Q ss_pred HHHhhCCCCceEEEEee
Q 015595 196 DVYRYLPPDLQVVLISA 212 (404)
Q Consensus 196 ~~~~~~~~~~~~i~~SA 212 (404)
..+..+..+ +.+++-|
T Consensus 645 ~aL~~~~~~-rTVlvIA 660 (716)
T KOG0058|consen 645 EALDRLMQG-RTVLVIA 660 (716)
T ss_pred HHHHHhhcC-CeEEEEe
Confidence 888766666 4444444
No 380
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=95.38 E-value=0.42 Score=44.04 Aligned_cols=146 Identities=17% Similarity=0.144 Sum_probs=65.3
Q ss_pred EEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHH---HHHHHHHHccc-cCeeEEEEEcCcchHHHHHHHh
Q 015595 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ---TEKVILAIGDF-INIQAHACVGGKSVGEDIRKLE 149 (404)
Q Consensus 74 iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 149 (404)
++.++.|+|||.+....++..+...+....++++....++... ....+...... ............... .
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 74 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKIIL------P 74 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEEE------T
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEEe------c
Confidence 4788999999999887777776655544556666334444444 22233333222 111111111111110 3
Q ss_pred cCCCeEEeChHHH--HHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeec--chHHHHHHHhc
Q 015595 150 HGVHVVSGTPGRV--CDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL--PHEILEMTTKF 225 (404)
Q Consensus 150 ~~~~iiv~T~~~l--~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~~~~~~~~ 225 (404)
++..|.+.+.+.- ..-+. -...+++++||+-...+..+...+............ +..|.|+ ...........
T Consensus 75 nG~~i~~~~~~~~~~~~~~~---G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~p~~~~~~~~~~~~~~ 150 (384)
T PF03237_consen 75 NGSRIQFRGADSPDSGDNIR---GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIR-MYISTPPNPGGWFYEIFQRN 150 (384)
T ss_dssp TS-EEEEES-----SHHHHH---TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--E-EEEEE---SSSHHHHHHHHH
T ss_pred CceEEEEecccccccccccc---ccccceeeeeecccCchHHHHHHHHhhhhcccCcce-EEeecCCCCCCceeeeeehh
Confidence 4455555553221 11222 245679999998887666655555555444332322 2444443 34445555544
Q ss_pred cCCC
Q 015595 226 MTDP 229 (404)
Q Consensus 226 ~~~~ 229 (404)
....
T Consensus 151 ~~~~ 154 (384)
T PF03237_consen 151 LDDD 154 (384)
T ss_dssp HCTS
T ss_pred hcCC
Confidence 4443
No 381
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.37 E-value=2.6 Score=41.07 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=41.1
Q ss_pred cHHHHHhhhhhhc----C---CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHH
Q 015595 57 SAIQQRAVMPIIK----G---RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (404)
Q Consensus 57 ~~~Q~~~~~~~~~----~---~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~ 121 (404)
+.-|..++..+.+ . .-+-+.|.-|=||+.+.=+.+......+- ..+.|..|+.+=....++.+
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~Gy--snIyvtSPspeNlkTlFeFv 324 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGY--SNIYVTSPSPENLKTLFEFV 324 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCc--ceEEEcCCChHHHHHHHHHH
Confidence 6678777655443 2 23578999999999776666666655443 34788889876555444443
No 382
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.35 E-value=0.13 Score=49.25 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=61.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC-CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN 344 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~ 344 (404)
.++++++.++++..+.++++.|++. +..+..+|++++..+|.+......+|+.+|+|+|...- -..++++..||.
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~lIIV 99 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLGLIIV 99 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCCEEEE
Confidence 3568999999999999999999864 67788999999999999988888899999999996533 245667776664
No 383
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.35 E-value=0.15 Score=50.36 Aligned_cols=90 Identities=19% Similarity=0.147 Sum_probs=71.2
Q ss_pred hHHHHHHhhhhcC--CCCeEEEEecchhhHHHHHHHHhhC-C-CeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Q 015595 256 WKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGY-N-FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWA 331 (404)
Q Consensus 256 ~~~~~l~~~l~~~--~~~k~lIf~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 331 (404)
.|.+.+..+++.. .++.+||.++.+..+..+.+.|+.. + ..+..+|++++..+|.+......+|+.+|+|+|..+
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA- 250 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA- 250 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-
Confidence 4655555555432 3668999999999999999999875 3 578999999999999999999999999999999755
Q ss_pred cCCCCCCCCEEEEcc
Q 015595 332 RGLDVQQVSLVINYD 346 (404)
Q Consensus 332 ~Gid~p~~~~vi~~~ 346 (404)
.-..+++...||..+
T Consensus 251 vFaP~~~LgLIIvdE 265 (665)
T PRK14873 251 VFAPVEDLGLVAIWD 265 (665)
T ss_pred EEeccCCCCEEEEEc
Confidence 334666777777544
No 384
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.34 E-value=0.042 Score=50.90 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=30.6
Q ss_pred ccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 32 ITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
...|++++-.+...+.+.+. .+..+..++... +...+.+++.||+|+|||+.+-.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g---~~~p~gvLL~GppGtGKT~lAka 184 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVG---IEPPKGVLLYGPPGTGKTLLAKA 184 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCceEEECCCCCChHHHHHH
Confidence 34566666555555555442 222222222111 12345799999999999966443
No 385
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.53 Score=40.05 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=47.2
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhh-hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEE
Q 015595 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (404)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (404)
.++..++.+.+-.+..++.+++--. .|-.+-.+.+.. +-.-+.+++-+|+|+|||+++-. .++.... ++|=
T Consensus 170 ekpdvty~dvggckeqieklrevve-~pll~perfv~lgidppkgvllygppgtgktl~ara------vanrtda-cfir 241 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVE-LPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARA------VANRTDA-CFIR 241 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHh-ccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHH------HhcccCc-eEEe
Confidence 4556678888877777777765321 122222333332 22347799999999999966432 2233323 5555
Q ss_pred cccHHHHHHH
Q 015595 108 SPTRELATQT 117 (404)
Q Consensus 108 ~p~~~L~~q~ 117 (404)
+-..+|++..
T Consensus 242 vigselvqky 251 (435)
T KOG0729|consen 242 VIGSELVQKY 251 (435)
T ss_pred ehhHHHHHHH
Confidence 5556666543
No 386
>PRK06620 hypothetical protein; Validated
Probab=95.31 E-value=0.037 Score=46.48 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchhhHhH
Q 015595 71 RDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~ 88 (404)
+.+++.||+|+|||....
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999996554
No 387
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.30 E-value=0.17 Score=43.45 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=28.9
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
..|.-++|.|++|+|||..++-.+...+... +.+++|++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 4566789999999999987776666655542 234888884
No 388
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.22 E-value=0.033 Score=45.29 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=28.5
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHH
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q 116 (404)
-+++++++.|++|+|||..+...+.+.+..+ ..++|+. ..+|...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~-~~~L~~~ 89 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFIT-ASDLLDE 89 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEE-HHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEee-cCceecc
Confidence 3567899999999999988776665655533 3366654 3445443
No 389
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.22 E-value=0.15 Score=47.16 Aligned_cols=47 Identities=21% Similarity=0.423 Sum_probs=27.4
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHH
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEIL 219 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 219 (404)
.....++||||+|.+.... .+.+.+.++.-++.. ++++++|-+..+.
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~ll 161 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPEDVL 161 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHHCh
Confidence 3456788999999986554 344555555433343 4555555444433
No 390
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.20 E-value=0.048 Score=50.79 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=28.2
Q ss_pred cHHHHHhhhhhhcCC--cEEEEcCCCCchhhHhHHHHHhhhhcC
Q 015595 57 SAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTS 98 (404)
Q Consensus 57 ~~~Q~~~~~~~~~~~--~~iv~a~tGsGKT~~~~~~~~~~~~~~ 98 (404)
.+.|...+..+++.. =+++.||||||||.. +..++..+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 677777777766643 368899999999965 44455555444
No 391
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.19 E-value=0.077 Score=50.74 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=37.8
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
|.-+++.+|+|+|||..++..+...+..+. +++|++- .+-..|.....+.++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge---~~~y~s~-eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKE---RAILFAY-EESRAQLLRNAYSWG 314 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEe-eCCHHHHHHHHHHcC
Confidence 356799999999999888877766655443 4888774 555777777776654
No 392
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.18 E-value=0.11 Score=47.66 Aligned_cols=108 Identities=14% Similarity=0.242 Sum_probs=58.8
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (404)
.+.+++.|++|+|||-..-. +.+.+.+..+..+++++.... -.......++.
T Consensus 113 ~nplfi~G~~GlGKTHLl~A-ign~~~~~~~~a~v~y~~se~-f~~~~v~a~~~-------------------------- 164 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQA-IGNEALANGPNARVVYLTSED-FTNDFVKALRD-------------------------- 164 (408)
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHHHhhCCCceEEeccHHH-HHHHHHHHHHh--------------------------
Confidence 45689999999999965444 344444445555677666532 11111111111
Q ss_pred cCCCeEEeChHHHHHHHHccCCCcccceEEecccccccc-CcHHHHHHHHhhCCC-CceEEEEeeecchHH
Q 015595 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSR-GFKDQIYDVYRYLPP-DLQVVLISATLPHEI 218 (404)
Q Consensus 150 ~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~-~~~~i~~SAT~~~~~ 218 (404)
.+.+.|. ... ..+++++|+++.+... .....+-.+++.+.. ..|+++.|..+|.++
T Consensus 165 -------~~~~~Fk-----~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l 222 (408)
T COG0593 165 -------NEMEKFK-----EKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKEL 222 (408)
T ss_pred -------hhHHHHH-----Hhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhh
Confidence 0111121 123 6789999999987665 233444444444432 347776666665543
No 393
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.16 E-value=0.065 Score=54.20 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=29.3
Q ss_pred cccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 33 TSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
..|++.+..+.+.+.+.+. .+..+..++... +...+.+++.||+|+|||+.+-.
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~laka 506 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLAKA 506 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHHHH
Confidence 3566666556666655542 111111111111 12245689999999999966443
No 394
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.12 E-value=0.11 Score=47.80 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=16.7
Q ss_pred CcEEEEcCCCCchhhHhHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.++++.||+|+|||.++-..+
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~ 61 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVM 61 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 578999999999997654433
No 395
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.11 E-value=0.13 Score=50.91 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=16.5
Q ss_pred cEEEEcCCCCchhhHhHHHHH
Q 015595 72 DVIAQAQSGTGKTSMIALTVC 92 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~ 92 (404)
..++.||.|+|||.++-..+.
T Consensus 42 AYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 358999999999977665443
No 396
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.2 Score=47.80 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=15.6
Q ss_pred EEEEcCCCCchhhHhHHHHH
Q 015595 73 VIAQAQSGTGKTSMIALTVC 92 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~ 92 (404)
.++.||.|+|||.++...+.
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999977665443
No 397
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.08 E-value=0.12 Score=47.38 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHCCCCC--CcHHHH-----HhhhhhhcCCcEEEEcCCCCchhhHhHHHHHh
Q 015595 40 IKDDLLRGIYQYGFEK--PSAIQQ-----RAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 40 l~~~~~~~l~~~~~~~--~~~~Q~-----~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
..+|+---+...|+.. +..-|+ ..++.+-++.+++..||+|+|||-.+.....+
T Consensus 172 ~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 172 LEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 3445555556677741 222111 12244556789999999999999665543333
No 398
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.14 Score=48.65 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=34.6
Q ss_pred ccccccCCCCHHHHHHHHHC--CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhH
Q 015595 32 ITSFDAMGIKDDLLRGIYQY--GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSM 86 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~ 86 (404)
..+|+++|=-+.....|..+ -+..|..|+.-.+ ..-+.+++.||+|+|||..
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~l 239 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTSL 239 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHHH
Confidence 44688887545544444432 2556777776554 3457899999999999954
No 399
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.06 E-value=0.093 Score=52.04 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=63.7
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-cccCCCCCCCCEEE
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WARGLDVQQVSLVI 343 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~~~Gid~p~~~~vi 343 (404)
.+.++++.++++.-|.+.++.+++. ++.+..++|+++..+|...++...+|+.+|+|+|.. +...+++.++..||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 4568999999999999888777653 689999999999999999999999999999999965 44467777777766
Q ss_pred E
Q 015595 344 N 344 (404)
Q Consensus 344 ~ 344 (404)
+
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 3
No 400
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.04 E-value=0.2 Score=50.42 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
..+.++.||+|+|||..+-...
T Consensus 207 ~~n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 4689999999999997755443
No 401
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.01 E-value=0.049 Score=46.70 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=36.7
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
.|..++|.|++|+|||..++..+...+..+. +++|++- .+-..+..+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge---~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC---cEEEEEe-eCCHHHHHHHHHHhC
Confidence 3567899999999999887776666664443 4888874 344556666665544
No 402
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.01 E-value=0.073 Score=47.09 Aligned_cols=61 Identities=16% Similarity=0.286 Sum_probs=42.5
Q ss_pred CCCCCcHHHHHhhhhhhcCC-cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHH
Q 015595 52 GFEKPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (404)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~-~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q 116 (404)
.|..+++-|...+..+...+ ++++++.||||||+..- ++...+... -+++.+=.+.+|.-+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLN-al~~~i~~~---eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLN-ALSGFIDSD---ERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHH-HHHhcCCCc---ccEEEEeehhhhccC
Confidence 35568888988877777765 99999999999996533 233333222 268888888776544
No 403
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.00 E-value=0.069 Score=48.74 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=23.3
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEE
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (404)
.+..++++||||||||.... +++..+.......+++.+
T Consensus 148 ~~GlilI~G~TGSGKTT~l~-al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA-SIYQHCGETYPDRKIVTY 185 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH-HHHHHHHhcCCCceEEEE
Confidence 34568999999999996653 344444433222344444
No 404
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.99 E-value=0.48 Score=42.45 Aligned_cols=130 Identities=16% Similarity=0.231 Sum_probs=62.6
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc-cc-HHH-HHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS-PT-REL-ATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-p~-~~L-~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (404)
-+.+.||+|+|||+.+...+...... +.+++++. .+ +.- .+|...+... .++.+.....+....
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~~D~~r~~a~eql~~~a~~----~~i~~~~~~~~~dpa------ 182 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAAGDTFRAAAIEQLQVWGER----VGVPVIAQKEGADPA------ 182 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEecCccchhhHHHHHHHHHH----cCceEEEeCCCCCHH------
Confidence 46789999999998766555443322 23465554 32 222 2333222222 223322221111110
Q ss_pred hcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccC-cHHHHHHHHhhC------CCCceEEEEeeecchHHHHH
Q 015595 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRG-FKDQIYDVYRYL------PPDLQVVLISATLPHEILEM 221 (404)
Q Consensus 149 ~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~------~~~~~~i~~SAT~~~~~~~~ 221 (404)
......+.......+++||+|=+-++.... ....+..+.+.. .+.-.++.++||...+....
T Consensus 183 -----------~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~ 251 (318)
T PRK10416 183 -----------SVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ 251 (318)
T ss_pred -----------HHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHH
Confidence 011122222223566899999887754332 223444443321 23345788999976654444
Q ss_pred HHhc
Q 015595 222 TTKF 225 (404)
Q Consensus 222 ~~~~ 225 (404)
...+
T Consensus 252 a~~f 255 (318)
T PRK10416 252 AKAF 255 (318)
T ss_pred HHHH
Confidence 4443
No 405
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.97 E-value=0.033 Score=47.66 Aligned_cols=19 Identities=21% Similarity=0.573 Sum_probs=14.3
Q ss_pred EEEEcCCCCchhhHhHHHH
Q 015595 73 VIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~ 91 (404)
++|.|++|+|||....-.+
T Consensus 1 ~vv~G~pGsGKSt~i~~~~ 19 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLL 19 (234)
T ss_pred CEEEcCCCCCHHHHHHHHH
Confidence 4789999999997644433
No 406
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.94 E-value=0.35 Score=44.25 Aligned_cols=130 Identities=12% Similarity=0.247 Sum_probs=72.8
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc-c-HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhc
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP-T-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p-~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (404)
+++++=-|||||+.+.-.+.+.-. ++.++++++- + |.-+ .++++.+....++.+.....+.+.- .+
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~RpAA---~eQL~~La~q~~v~~f~~~~~~~Pv-~I----- 170 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTYRPAA---IEQLKQLAEQVGVPFFGSGTEKDPV-EI----- 170 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH---cCCceEEEecccCChHH---HHHHHHHHHHcCCceecCCCCCCHH-HH-----
Confidence 577999999999887765544433 2334665553 2 2222 3344444444445443332122111 11
Q ss_pred CCCeEEeChHHHHHHHHccCCCcccceEEecccccc-ccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhc
Q 015595 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 225 (404)
Q Consensus 151 ~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 225 (404)
..+-++......++++|+|=+-++. +...-..+..+...+.++--++.+-|+...+.....+.|
T Consensus 171 -----------ak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF 235 (451)
T COG0541 171 -----------AKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAF 235 (451)
T ss_pred -----------HHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHH
Confidence 1122233334456888888887653 334566777777777777777788888776655555544
No 407
>PHA00012 I assembly protein
Probab=94.93 E-value=0.53 Score=41.59 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=22.0
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcC
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTS 98 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~ 98 (404)
.++.|.+|+|||+.+...+...+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47899999999999888888877665
No 408
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.92 E-value=0.2 Score=40.22 Aligned_cols=45 Identities=7% Similarity=0.140 Sum_probs=31.6
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHH
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 123 (404)
++|.|++|||||..+...+.. .+.+++|+.-..++-.++.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 578999999999776655432 223588887777776666666655
No 409
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.91 E-value=0.25 Score=51.65 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=33.3
Q ss_pred cccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecc
Q 015595 173 TRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 215 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 215 (404)
.--++|||++|.+.+......+..+++..+....+|+.|-+.+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3346779999998766666788888888888888888887743
No 410
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.88 E-value=0.12 Score=47.27 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=22.1
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS 98 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~ 98 (404)
+-.|+.+++.||+|+|||..+.. +...+..+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhhccc
Confidence 44578899999999999965443 55554444
No 411
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.87 E-value=0.22 Score=46.18 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=50.3
Q ss_pred CCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
+..+-..|.++.-..-.|.. .+.+-.|||||.+.++-+.. +....+..++++.+-|+.|+.++.+.+.+++
T Consensus 160 IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~-lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 160 IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE-LHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH-HhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 33456667666544444544 67899999999776554443 3445556789999999999999998888765
No 412
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.87 E-value=0.15 Score=48.14 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=33.7
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
|.-+++.+++|+|||...+..+......+ .+++|+..- +-..|......++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g---~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQ---MKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEECc-CCHHHHHHHHHHc
Confidence 45578999999999987776655544332 358888764 3455655555443
No 413
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.86 E-value=0.2 Score=47.33 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=18.7
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhh
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
+..++.||.|+|||.++...+....
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3468999999999987766554443
No 414
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.85 E-value=0.22 Score=45.04 Aligned_cols=41 Identities=7% Similarity=0.252 Sum_probs=26.5
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEee
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 212 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 212 (404)
....+++||||+|.+.... .+.+.+.++.-|+...+|++|.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 4567899999999875544 4556666666555555555443
No 415
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.85 E-value=0.068 Score=54.06 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=31.0
Q ss_pred ccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhH
Q 015595 32 ITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~ 88 (404)
..+|++++-.+...+.+.+. .+..|..++... +..++.+++.||+|+|||..+-
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHHHH
Confidence 35677776555555555442 122222222211 2345789999999999996543
No 416
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.83 E-value=0.091 Score=51.57 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=28.7
Q ss_pred CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 170 TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 170 ~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
.+.+-+++|+||+..-.+......+.+.+..+.++..++..+
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEe
Confidence 455668999999999888877777777766444443333333
No 417
>CHL00176 ftsH cell division protein; Validated
Probab=94.81 E-value=0.12 Score=50.98 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=31.7
Q ss_pred ccccccccCCCCHHHHHHHHHC-C-CCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 30 EAITSFDAMGIKDDLLRGIYQY-G-FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~-~-~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+...+|++..--+...+.+.+. . +..+..++... ....+.+++.||+|+|||..+-.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g---~~~p~gVLL~GPpGTGKT~LAra 235 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVG---AKIPKGVLLVGPPGTGKTLLAKA 235 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhcc---CCCCceEEEECCCCCCHHHHHHH
Confidence 3445777776555555655542 1 11222222111 11235799999999999966543
No 418
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.80 E-value=0.065 Score=46.31 Aligned_cols=49 Identities=14% Similarity=0.320 Sum_probs=33.3
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~ 121 (404)
++.++++.||+|+|||..+.....+.+ .. +.+++ .++..++..++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~--g~sv~-f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KA--GISVL-FITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc--CCeEE-EEEHHHHHHHHHHHH
Confidence 567999999999999988776555555 22 23344 455567776655544
No 419
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.14 Score=45.57 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=39.0
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCc-HHHHHhhhhhhcCCcEEEEcCCCCchhhHhH
Q 015595 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPS-AIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~-~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~ 88 (404)
.+.+-..+|.+.+--+.+.+++++.-+..++ |-...-.+.+..-+.+++.+|+|+|||..+-
T Consensus 83 ~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 83 PPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred chhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHH
Confidence 3345556788888888888888875443222 2111111222234789999999999995543
No 420
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.76 E-value=0.41 Score=38.40 Aligned_cols=140 Identities=17% Similarity=0.220 Sum_probs=64.2
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCC
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGV 152 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (404)
+.|--..|-|||.+++-.++..+..+.+ |+++==.+.- ....++..+....++.+.....+-........ .
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~r---V~ivQFlKg~--~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~----~ 76 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGMR---VLIVQFLKGG--RYSGELKALKKLPNVEIERFGKGFVWRMNEEE----E 76 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT-----EEEEESS--S--S--HHHHHHGGGT--EEEE--TT----GGGHH----H
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCCE---EEEEEEecCC--CCcCHHHHHHhCCeEEEEEcCCcccccCCCcH----H
Confidence 5567778999999998888888766544 7776544431 11122322222222333222111100000000 0
Q ss_pred CeEEeChHHHHHHHHcc-CCCcccceEEeccccccccCc--HHHHHHHHhhCCCCceEEEEeeecchHHHHHHH
Q 015595 153 HVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 223 (404)
Q Consensus 153 ~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 223 (404)
+ .......++..... .-..++++|+||+-...+..+ ...+..+++..|...-+|+..-.+++++.+...
T Consensus 77 ~--~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 77 D--RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp H--HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred H--HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 0 00111122222222 235689999999988766543 345667777767777777766667777666543
No 421
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.74 E-value=0.083 Score=48.02 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=31.7
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
-.|+..+|.||.|+|||..+-. +...+....... .+|++-..+-..+..+..+.+
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~-Ian~I~~nhFDv-~~~VvLIgER~~EVtdiqrsI 221 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQN-IANSITTNHPEV-HLIVLLIDERPEEVTDMQRSV 221 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHH-HHHHHHhhcCCe-EEEEEEeCCchhHHHHHHHHh
Confidence 3478899999999999965433 555554433233 334443444444444444444
No 422
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.72 E-value=0.38 Score=49.57 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCchhhHhHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~ 91 (404)
++.++.||+|+|||.++-..+
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la 215 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLA 215 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHH
Confidence 578999999999997665433
No 423
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.21 Score=49.12 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=25.7
Q ss_pred CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 170 TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 170 ~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
.+....++||||+|.+.... ...+...++..+....+|+.|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred ccCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 45567899999999985543 345555556555444444433
No 424
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.68 E-value=0.32 Score=47.40 Aligned_cols=57 Identities=11% Similarity=0.162 Sum_probs=42.9
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHcc
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 126 (404)
.+.+-.++.+|=|-|||.+..+.+...+... +.+++|.+|...-+++..+.+.....
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3456678999999999987765555444322 45799999999888888888777654
No 425
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.67 E-value=0.089 Score=47.91 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhh
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~ 96 (404)
.+..++++||||||||.... +++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL~-aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLA-AIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHH-HHHHHHh
Confidence 45678999999999997653 3444443
No 426
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.64 E-value=0.11 Score=47.69 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=29.6
Q ss_pred ccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 32 ITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
...|++++-.+...+.+.+. .+..+..+..-. +...+.+++.||+|+|||+.+-.
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g---~~~p~gvLL~GppGtGKT~laka 175 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVG---IEPPKGVLLYGPPGTGKTLLAKA 175 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHHHH
Confidence 34566665555555555442 121222111111 12345699999999999966543
No 427
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.59 E-value=0.065 Score=48.40 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=28.5
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L 113 (404)
+..+.+++++|+||||||...- +++..+... .+++.+=.+.+|
T Consensus 159 v~~~~nilI~G~tGSGKTTll~-aLl~~i~~~---~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSK-TLISAIPPQ---ERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHH-HHHcccCCC---CCEEEECCCccc
Confidence 4457899999999999996543 344444332 346666666655
No 428
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.59 E-value=0.1 Score=50.71 Aligned_cols=43 Identities=28% Similarity=0.321 Sum_probs=29.5
Q ss_pred cCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 169 KTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 169 ~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
..+.+.+++|+||+-.-.+......+.+.+....++.-+|..|
T Consensus 484 all~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 484 ALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 3466778889999998888777777766666554444455444
No 429
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.58 E-value=0.14 Score=51.53 Aligned_cols=73 Identities=26% Similarity=0.400 Sum_probs=59.3
Q ss_pred HHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCC-----CeEEE-ecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 015595 257 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN-----FTVSS-MHGDMPQKERDAIMGEFRSGTTRVLITTDV 329 (404)
Q Consensus 257 ~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 329 (404)
.+-.+..+.-...++++++.+++..-+.+.++.|++.. ..+.. +|+.++..++++.+++|.+|..+|||+|..
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 34555556666677999999999999999988887652 33332 999999999999999999999999999954
No 430
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.42 Score=41.28 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=40.5
Q ss_pred CcceeeccCCcccccccccCCCCHHHHHHHHH---CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhH
Q 015595 19 DKMVFETTEGVEAITSFDAMGIKDDLLRGIYQ---YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSM 86 (404)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~---~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~ 86 (404)
+.++.--..+-.|..+|.+.+-.++.+..+++ .....|-.|+.-.+. .-+.+|+.+++|+|||+.
T Consensus 168 dpmv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGik---pPKGVIlyG~PGTGKTLL 235 (440)
T KOG0726|consen 168 DPMVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIK---PPKGVILYGEPGTGKTLL 235 (440)
T ss_pred CccceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCC---CCCeeEEeCCCCCchhHH
Confidence 33444444444566678887644444444544 345556666655543 456899999999999944
No 431
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.40 E-value=0.18 Score=51.81 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=63.4
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-cccCCCCCCCCEEE
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WARGLDVQQVSLVI 343 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~~~Gid~p~~~~vi 343 (404)
.+.+++|.+++..-|.+.++.|+.. ++.+..++|..+..++..+++.+.+|+.+|+|+|.. +...+.+.++..+|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3578999999999999998887763 567888999999999999999999999999999964 44567788888776
Q ss_pred E
Q 015595 344 N 344 (404)
Q Consensus 344 ~ 344 (404)
+
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 4
No 432
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.37 E-value=0.38 Score=49.30 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=24.3
Q ss_pred CCcHHHHHhhhhhh----c--CCcEEEEcCCCCchhhHhHHHH
Q 015595 55 KPSAIQQRAVMPII----K--GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~----~--~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.|--.|...+..+. + ..+.++.||+|+|||.++-..+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La 229 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLA 229 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHH
Confidence 34444555555543 2 3578999999999997655433
No 433
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.22 E-value=0.17 Score=41.51 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=27.0
Q ss_pred CcHHHHHhhhhhh-cCCcEEEEcCCCCchhhHhHHHHHhhh
Q 015595 56 PSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 56 ~~~~Q~~~~~~~~-~~~~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
..+.|...+.... .+..+++.+|||||||...-. ++..+
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~a-L~~~i 49 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNA-LLAFI 49 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHH-HHhhc
Confidence 5666777666544 467889999999999966433 34433
No 434
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.18 E-value=0.28 Score=50.41 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=17.4
Q ss_pred CcEEEEcCCCCchhhHhHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVC 92 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~ 92 (404)
.+.++.||+|+|||.++-..+.
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 5789999999999977654443
No 435
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=94.17 E-value=0.43 Score=38.38 Aligned_cols=140 Identities=15% Similarity=0.189 Sum_probs=70.6
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHH-HHHHHHHccccCeeEEEEEcCcchHHHHHHHhcC
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT-EKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (404)
++|.-..|-|||++++-.++..+..+.+ ++|+-=.+.-...- ...+.++ ..++....+..+..-..... .
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~r---v~vvQFiKg~~~~GE~~~~~~~--~~~v~~~~~~~g~tw~~~~~----~ 101 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLR---VGVVQFIKGGWKYGEEAALEKF--GLGVEFHGMGEGFTWETQDR----E 101 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCE---EEEEEEeecCcchhHHHHHHhh--ccceeEEecCCceeCCCcCc----H
Confidence 6788889999999999888888766543 55543221110111 1122222 11122222111111000000 0
Q ss_pred CCeEEeChHHHHHHHHcc-CCCcccceEEeccccccccCcH--HHHHHHHhhCCCCceEEEEeeecchHHHHHHH
Q 015595 152 VHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDEMLSRGFK--DQIYDVYRYLPPDLQVVLISATLPHEILEMTT 223 (404)
Q Consensus 152 ~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~~~~~~~~--~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 223 (404)
.++ ..+...+...... .-..+++||+||.-..+..++. ..+..+++.-|....+|+..-..++++.++..
T Consensus 102 ~d~--~aa~~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 102 ADI--AAAKAGWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred HHH--HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 011 1112222222221 2236799999999987665533 45666667667777777666666776666543
No 436
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.17 E-value=0.19 Score=49.74 Aligned_cols=88 Identities=18% Similarity=0.193 Sum_probs=69.1
Q ss_pred hHHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHhhC-CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccc
Q 015595 256 WKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWAR 332 (404)
Q Consensus 256 ~~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 332 (404)
.|.+...++++. ..++.+||.++.+.....+...|+.+ +.++..+|+++++.+|.....+..+|+.+|+|+|..+ -
T Consensus 229 GKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA-l 307 (730)
T COG1198 229 GKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA-L 307 (730)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh-h
Confidence 355555444443 23578999999999999998888775 7789999999999999999999999999999999654 2
Q ss_pred CCCCCCCCEEEE
Q 015595 333 GLDVQQVSLVIN 344 (404)
Q Consensus 333 Gid~p~~~~vi~ 344 (404)
-..++++..+|.
T Consensus 308 F~Pf~~LGLIIv 319 (730)
T COG1198 308 FLPFKNLGLIIV 319 (730)
T ss_pred cCchhhccEEEE
Confidence 345666666664
No 437
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.41 Score=47.32 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=38.0
Q ss_pred CcccccccccCCCCHHHHHHHHHC-CC-CCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhH
Q 015595 28 GVEAITSFDAMGIKDDLLRGIYQY-GF-EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSM 86 (404)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~l~~~-~~-~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~ 86 (404)
..+....|.+.--.++..+.+.+. .| ..|-.||.-... -=+.++++||+|+|||+.
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAK---iPkGvLL~GPPGTGKTLL 360 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAK---IPKGVLLVGPPGTGKTLL 360 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCc---CcCceEEECCCCCcHHHH
Confidence 555667899987777777777663 33 345566654432 125699999999999944
No 438
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.10 E-value=0.13 Score=43.76 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 015595 70 GRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~ 88 (404)
++.++|.||.|+|||...-
T Consensus 20 ~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCcCCHHHHHH
Confidence 3678899999999996533
No 439
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.54 Score=44.16 Aligned_cols=68 Identities=24% Similarity=0.273 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHhhh-------hhhcC-----CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEE
Q 015595 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVM-------PIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (404)
Q Consensus 38 ~~l~~~~~~~l~~~~~~~~~~~Q~~~~~-------~~~~~-----~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~l 105 (404)
++.++.-.+.+...|+....+.=.+.+. .+... ..+++.+|+|||||..++-.+ ..+.-+.+=
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA-----~~S~FPFvK 568 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIA-----LSSDFPFVK 568 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHH-----hhcCCCeEE
Confidence 4567777777766665433333222222 11111 357999999999995443322 233344566
Q ss_pred EEccc
Q 015595 106 ILSPT 110 (404)
Q Consensus 106 il~p~ 110 (404)
++.|.
T Consensus 569 iiSpe 573 (744)
T KOG0741|consen 569 IISPE 573 (744)
T ss_pred EeChH
Confidence 66663
No 440
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.01 E-value=0.23 Score=46.67 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=22.7
Q ss_pred HHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 61 QRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 61 ~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
..+...++.+.++++.||+|+|||..+-.
T Consensus 30 ~lll~aalag~hVLL~GpPGTGKT~LAra 58 (498)
T PRK13531 30 RLCLLAALSGESVFLLGPPGIAKSLIARR 58 (498)
T ss_pred HHHHHHHccCCCEEEECCCChhHHHHHHH
Confidence 34455567789999999999999976543
No 441
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.00 E-value=0.28 Score=42.11 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=25.4
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhh---------cCCCceeEEEEcc
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVD---------TSSREVQALILSP 109 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~---------~~~~~~~~lil~p 109 (404)
.++.||.|+|||+.++..++.... ....+.+++|+.-
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~ 49 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA 49 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC
Confidence 588999999999887766654331 1123456888883
No 442
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=93.99 E-value=0.15 Score=51.04 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=56.9
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC-CCceeEEEEcccHHHHHHHHHHHHHHcc
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGD 126 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~L~~q~~~~~~~~~~ 126 (404)
.+++-|.+++... ....+|.|..|||||.+...-+.+.+... -....++.++=|+.-+.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5889999999865 66799999999999999888888877664 2334588888888888899999888764
No 443
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.98 E-value=0.59 Score=41.84 Aligned_cols=51 Identities=10% Similarity=0.247 Sum_probs=30.9
Q ss_pred HHHHHHHcc-CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeee
Q 015595 161 RVCDMIKRK-TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 213 (404)
Q Consensus 161 ~l~~~l~~~-~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 213 (404)
.+.+.+... .....+++|||++|.+.... .+.+.+.++.-| +..+|++|..
T Consensus 111 ~i~~~l~~~p~~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 111 EIKRFLSRPPLEAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred HHHHHHccCcccCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECC
Confidence 344444444 34567899999999875544 455666666655 5545554443
No 444
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=93.89 E-value=0.2 Score=42.71 Aligned_cols=104 Identities=12% Similarity=0.210 Sum_probs=68.2
Q ss_pred HHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCC----CcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhcccc
Q 015595 286 LTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT----TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRS 361 (404)
Q Consensus 286 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~----~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~ 361 (404)
+...+.. ++.+..++++.+... -.|.++. ..|+|+-..+++|+.++++..-++.+.+...+++.||.=-.
T Consensus 103 l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwF 176 (239)
T PF10593_consen 103 LPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWF 176 (239)
T ss_pred HHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcc
Confidence 3333333 566777776544332 2233332 67889999999999999999999999999999999986444
Q ss_pred C-CCCCceeEEEEeccCcHH---HHHHHHHHHcccccc
Q 015595 362 G-RFGRKGVAINFVKNDDIK---ILRDIEQYYSTQIDE 395 (404)
Q Consensus 362 ~-R~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 395 (404)
| |.|-...|-++.+++-.. .+....+.++..++.
T Consensus 177 GYR~gY~dl~Ri~~~~~l~~~f~~i~~~~e~lr~~i~~ 214 (239)
T PF10593_consen 177 GYRPGYEDLCRIYMPEELYDWFRHIAEAEEELREEIKE 214 (239)
T ss_pred cCCcccccceEEecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 666556777777766433 333344444444433
No 445
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.35 Score=46.56 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=38.4
Q ss_pred cccccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHh
Q 015595 29 VEAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~ 87 (404)
..+..+|++.+=-+++.+.|++. ....|-.+..-.+ ..-+.+++.+|+|+|||+.+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 34556799988778888888752 3334444444442 24578999999999999653
No 446
>PRK04328 hypothetical protein; Provisional
Probab=93.85 E-value=0.13 Score=44.49 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=35.5
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
.|..++|.+++|+|||..++..+.+.+..+.+ ++|++- .+-..+..+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~---~lyis~-ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEP---GVYVAL-EEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCc---EEEEEe-eCCHHHHHHHHHHcC
Confidence 35668899999999998877767666655443 777763 334455555555554
No 447
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.81 E-value=0.18 Score=39.49 Aligned_cols=117 Identities=15% Similarity=0.226 Sum_probs=56.2
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh-
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE- 149 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (404)
..+++.+++|+|||....- +...+....-.. .=|++| ++++=++..++++.-+..|....-......
T Consensus 6 mki~ITG~PGvGKtTl~~k-i~e~L~~~g~kv-gGf~t~----------EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~ 73 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLK-IAEKLREKGYKV-GGFITP----------EVREGGKRIGFKIVDLATGEEGILARVGFSR 73 (179)
T ss_pred eEEEEeCCCCccHHHHHHH-HHHHHHhcCcee-eeEEee----------eeecCCeEeeeEEEEccCCceEEEEEcCCCC
Confidence 3588999999999966554 555554443222 334444 233444455566555543322110000000
Q ss_pred ---cCCCeEEeChHHH-HHHHHccCCCcccceEEecccccccc--CcHHHHHHHHhh
Q 015595 150 ---HGVHVVSGTPGRV-CDMIKRKTLRTRAIKLLDESDEMLSR--GFKDQIYDVYRY 200 (404)
Q Consensus 150 ---~~~~iiv~T~~~l-~~~l~~~~~~~~~~vIiDE~h~~~~~--~~~~~~~~~~~~ 200 (404)
..+.+-+-..+.+ ...+++ .+..-|++|+||+--|-.. .|...+..+++.
T Consensus 74 ~rvGkY~V~v~~le~i~~~al~r-A~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 74 PRVGKYGVNVEGLEEIAIPALRR-ALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred cccceEEeeHHHHHHHhHHHHHH-HhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 0111222111211 112222 2344799999999875433 455555555543
No 448
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.79 E-value=0.2 Score=45.16 Aligned_cols=43 Identities=19% Similarity=0.378 Sum_probs=27.0
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L 113 (404)
+..+.+++++|+||||||... -+++..+... .+++.+=.+.++
T Consensus 157 v~~~~nili~G~tgSGKTTll-~aL~~~ip~~---~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFT-NAALREIPAI---ERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHH-HHHHhhCCCC---CeEEEecCCCcc
Confidence 345789999999999999654 3344444333 345554344443
No 449
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.76 E-value=0.22 Score=43.11 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=22.9
Q ss_pred EEEcCCCCchhhHhHHHHHhhhhcCCCceeE
Q 015595 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQA 104 (404)
Q Consensus 74 iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~ 104 (404)
-+.|+||+||..++-+.+-+....+...+.|
T Consensus 114 SfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V 144 (344)
T KOG2170|consen 114 SFHGWTGTGKNYVAEIIAENLYRGGLRSPFV 144 (344)
T ss_pred EecCCCCCchhHHHHHHHHHHHhccccchhH
Confidence 4689999999999888776666555544433
No 450
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.75 E-value=0.6 Score=43.02 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
+..++.||+|+|||..+...
T Consensus 40 ~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35789999999999766554
No 451
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.70 E-value=0.047 Score=57.99 Aligned_cols=93 Identities=23% Similarity=0.357 Sum_probs=75.9
Q ss_pred eEEEEecchhhHHHHHHHHhhCC-CeEEEecCCCC-----------HHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCC
Q 015595 272 QAVIFCNTKRKVDWLTEKMRGYN-FTVSSMHGDMP-----------QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV 339 (404)
Q Consensus 272 k~lIf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~-----------~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~ 339 (404)
..++|++....+....+.++... ..+..+.|.+. ...+.+++..|.....++|++|.++.+|+|.+.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899999999998888887642 22333444322 2235688899999999999999999999999999
Q ss_pred CEEEEccCCCChhhhhhhccccCCC
Q 015595 340 SLVINYDLPNNRELYIHRIGRSGRF 364 (404)
Q Consensus 340 ~~vi~~~~p~s~~~~~Q~~GR~~R~ 364 (404)
+-++.++.|.....|+|..||+.+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999765
No 452
>PHA00350 putative assembly protein
Probab=93.68 E-value=0.43 Score=43.80 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=18.7
Q ss_pred EEEEcCCCCchhhHhHH-HHHhhhhcC
Q 015595 73 VIAQAQSGTGKTSMIAL-TVCQTVDTS 98 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~-~~~~~~~~~ 98 (404)
.++.|.+|||||+.++- .+...+.++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 47899999999987765 345555444
No 453
>PRK09087 hypothetical protein; Validated
Probab=93.68 E-value=0.24 Score=42.09 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..+++.||+|+|||...-.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 34589999999999966553
No 454
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.68 E-value=0.15 Score=44.51 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=38.7
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHcc
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 126 (404)
.|+.++|.+++|+|||..++..+...+..+. +++|++- .+...+..+.+.+++.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge---~vlyvs~-~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGE---PVLYVST-EESPEELLENARSFGW 75 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCC---cEEEEEe-cCCHHHHHHHHHHcCC
Confidence 4677899999999999888877777766644 4887776 3445556666655543
No 455
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.67 E-value=0.092 Score=53.90 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=74.3
Q ss_pred CeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCC
Q 015595 271 TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNN 350 (404)
Q Consensus 271 ~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s 350 (404)
.++|+|+.-....+.+...+.-.++......+ .++....+..|++ --..++-++..+.|+|+-.+.+|+..++-.+
T Consensus 1222 ekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN 1297 (1394)
T KOG0298|consen 1222 EKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPILN 1297 (1394)
T ss_pred ceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccccC
Confidence 57899998888888888887776655433332 3344556666755 2245577889999999999999999999999
Q ss_pred hhhhhhhccccCCCCCceeE
Q 015595 351 RELYIHRIGRSGRFGRKGVA 370 (404)
Q Consensus 351 ~~~~~Q~~GR~~R~g~~~~~ 370 (404)
+..-.|.+||+.|.||....
T Consensus 1298 ~~~E~QAigRvhRiGQ~~pT 1317 (1394)
T KOG0298|consen 1298 PGDEAQAIGRVHRIGQKRPT 1317 (1394)
T ss_pred chHHHhhhhhhhhcccccch
Confidence 99999999999999987543
No 456
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.051 Score=47.30 Aligned_cols=58 Identities=10% Similarity=0.143 Sum_probs=34.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCC----------CCcHHHHHhhhh------hhcCCcEEEEcCCCCchhhHhHH
Q 015595 32 ITSFDAMGIKDDLLRGIYQYGFE----------KPSAIQQRAVMP------IIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~----------~~~~~Q~~~~~~------~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.....++|.+..+.+.|.+.-+. ..+.|=.+.-.. =+...++++.+|||||||+.+..
T Consensus 43 ~~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 43 EKELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred chhhccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHH
Confidence 34566788888888887653221 122222222111 02235789999999999977654
No 457
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.62 E-value=0.19 Score=43.81 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=26.6
Q ss_pred HHHHCCCCCCcHHHHHhhhhhhc--CCcEEEEcCCCCchhhHhHH
Q 015595 47 GIYQYGFEKPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~--~~~~iv~a~tGsGKT~~~~~ 89 (404)
.+.+.|+ .+.|.+.+..++. +..+++.++||||||.....
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 3445554 5556666665544 34588999999999976543
No 458
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.33 Score=44.70 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=41.4
Q ss_pred cccceEEeccccccccC-------cHH-----HHHHHHhhCCCCceEEEEeeecchH-HHHHHHhccCCCeEEEecCCcc
Q 015595 173 TRAIKLLDESDEMLSRG-------FKD-----QIYDVYRYLPPDLQVVLISATLPHE-ILEMTTKFMTDPVKILVKRDEL 239 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~~-------~~~-----~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~ 239 (404)
...++++||+|.++..- ..+ .+.........+-++++++||-.+. +.+.+.+.+.
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~------------ 312 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFV------------ 312 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhh------------
Confidence 34566788888765331 111 1111222223456899999996554 3333333222
Q ss_pred ccCCceEEEEEecCchhHHHHHHhhhhcC
Q 015595 240 TLEGIKQFFVAVEREEWKFDTLCDLYDTL 268 (404)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 268 (404)
...|...++.+.....+..++...
T Consensus 313 -----kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 313 -----KRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred -----ceeeecCCCHHHHHHHHHHHHHhC
Confidence 223344455555677777777764
No 459
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.57 Score=41.18 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=35.4
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhh--cCCC-ceeEEEEcccHH-----------HHHHHHHHHHHHccccCeeEEEEE
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVD--TSSR-EVQALILSPTRE-----------LATQTEKVILAIGDFINIQAHACV 136 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~--~~~~-~~~~lil~p~~~-----------L~~q~~~~~~~~~~~~~~~~~~~~ 136 (404)
+-+++.||+|+|||.. .-++++++. ...+ ..-.++=....+ |+.+++..+.++....+.-+.++.
T Consensus 178 RliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4478999999999932 333444441 1111 122444444444 445555556665555555555554
Q ss_pred c
Q 015595 137 G 137 (404)
Q Consensus 137 ~ 137 (404)
+
T Consensus 257 D 257 (423)
T KOG0744|consen 257 D 257 (423)
T ss_pred H
Confidence 4
No 460
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.54 E-value=0.34 Score=51.24 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=62.0
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-cccCCCCCCCCEEE
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WARGLDVQQVSLVI 343 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~~~Gid~p~~~~vi 343 (404)
.+.+++|.+++...|.++++.++.. ++.+..+++..+..++..+++.+.+|..+|+|+|.. +...+++.++..+|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999999888753 457788999999999999999999999999999964 44456666777666
Q ss_pred E
Q 015595 344 N 344 (404)
Q Consensus 344 ~ 344 (404)
+
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 3
No 461
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.46 E-value=0.18 Score=43.37 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=21.7
Q ss_pred hhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc
Q 015595 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (404)
Q Consensus 66 ~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~ 97 (404)
.+-.|+.+++.+|.|+|||... -.+...+..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLl-r~I~n~l~~ 42 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLL-QSIANAITK 42 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHH-HHHHhcccc
Confidence 3456889999999999999653 334444433
No 462
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.45 E-value=0.62 Score=47.86 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=17.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVC 92 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~ 92 (404)
++.++.||+|+|||.++-..+.
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 5899999999999977654443
No 463
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.41 E-value=0.11 Score=50.60 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=58.2
Q ss_pred HHHHhcCCCcEEEEcCccccCCCCCCCCEE--------EEccCCCChhhhhhhccccCCCCCc-eeEEEEeccC---cHH
Q 015595 313 MGEFRSGTTRVLITTDVWARGLDVQQVSLV--------INYDLPNNRELYIHRIGRSGRFGRK-GVAINFVKND---DIK 380 (404)
Q Consensus 313 ~~~f~~~~~~vlv~t~~~~~Gid~p~~~~v--------i~~~~p~s~~~~~Q~~GR~~R~g~~-~~~~~~~~~~---~~~ 380 (404)
-++|.+|+..|-|-+.+++.||.+..-+.| |-+.+|||.+..+|.+||..|.++- +.-|+|+-.+ +..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 467889999999999999999999854433 4577899999999999999998765 4445554433 555
Q ss_pred HHHHHHHHHc
Q 015595 381 ILRDIEQYYS 390 (404)
Q Consensus 381 ~~~~~~~~~~ 390 (404)
+...+.+-++
T Consensus 930 FAS~VAKRLE 939 (1300)
T KOG1513|consen 930 FASIVAKRLE 939 (1300)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 464
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.35 E-value=0.08 Score=44.87 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchhhHhH
Q 015595 71 RDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~ 88 (404)
.-+++.++|||||+...+
T Consensus 128 GLviiVGaTGSGKSTtmA 145 (375)
T COG5008 128 GLVIIVGATGSGKSTTMA 145 (375)
T ss_pred ceEEEECCCCCCchhhHH
Confidence 347899999999996533
No 465
>COG1485 Predicted ATPase [General function prediction only]
Probab=93.34 E-value=1.3 Score=39.62 Aligned_cols=108 Identities=14% Similarity=0.163 Sum_probs=57.2
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhc
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (404)
+.+-+.|+.|.|||...-.. .+.+ ...++.+ ++.-.-..++.+.+..+. |..+.
T Consensus 66 ~GlYl~GgVGrGKT~LMD~F-y~~l-p~~~k~R----~HFh~FM~~vH~~l~~l~-----------g~~dp--------- 119 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLF-YESL-PGERKRR----LHFHRFMARVHQRLHTLQ-----------GQTDP--------- 119 (367)
T ss_pred ceEEEECCCCccHHHHHHHH-HhhC-Ccccccc----ccHHHHHHHHHHHHHHHc-----------CCCCc---------
Confidence 56789999999999553332 2222 2222122 444555666666665532 11110
Q ss_pred CCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhh-CCCCceEEEEeeecchH
Q 015595 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRY-LPPDLQVVLISATLPHE 217 (404)
Q Consensus 151 ~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~ 217 (404)
+ ..+.........+++|||+|- .+-.-.-.+.++++. +...+.+++.|-|.|++
T Consensus 120 ----l--------~~iA~~~~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~ 174 (367)
T COG1485 120 ----L--------PPIADELAAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPDN 174 (367)
T ss_pred ----c--------HHHHHHHHhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHH
Confidence 0 111111233456788999994 333222333333332 24588888888888765
No 466
>PF12846 AAA_10: AAA-like domain
Probab=93.20 E-value=0.12 Score=46.01 Aligned_cols=39 Identities=18% Similarity=0.421 Sum_probs=28.2
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
+++++.|+||+|||......+...+..+. .++++=|..+
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~---~~~i~D~~g~ 40 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGP---RVVIFDPKGD 40 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCC---CEEEEcCCch
Confidence 57899999999999887766655555553 3777756544
No 467
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.14 E-value=0.75 Score=43.30 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=29.4
Q ss_pred HhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 62 RAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 62 ~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
+.+.-+..|.-+++.|+||+|||..++-.+.+..... +.+++|++
T Consensus 186 ~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~--g~~v~~fS 230 (421)
T TIGR03600 186 RLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALRE--GKPVLFFS 230 (421)
T ss_pred HHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 3333445566789999999999977776655554222 23477776
No 468
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=93.09 E-value=0.16 Score=53.82 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=46.9
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcC--CCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTS--SREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~--~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
.+.+++|.|..|||||.+....++..+... -.-.++|+++-|++-+.++..++..-
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 466899999999999999888888888774 34457999999999999988887653
No 469
>PRK10436 hypothetical protein; Provisional
Probab=93.06 E-value=0.21 Score=47.09 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=25.2
Q ss_pred cHHHHHhhhhhhc--CCcEEEEcCCCCchhhHhHHHHHhhh
Q 015595 57 SAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 57 ~~~Q~~~~~~~~~--~~~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
.+.|...+..+.. +.-++++||||||||+.... ++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a-~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYS-ALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHH-HHHhh
Confidence 5556666655543 45688999999999976543 34444
No 470
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.06 E-value=0.13 Score=44.73 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=27.9
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
.|.-++|.|++|+|||..++..+.+.+..+. +++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge---~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGN---PVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCC---cEEEEEe
Confidence 3456799999999999887776666554433 4777773
No 471
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.69 Score=44.60 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=30.3
Q ss_pred ccccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 30 EAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.+...|.+.+-.....+.+.+. ....+..++.. .+...+.+++.||+|+|||+.+-.
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~---~~~~~~giLl~GpPGtGKT~lAka 295 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKL---GLRPPKGVLLYGPPGTGKTLLAKA 295 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhc---CCCCCCeeEEECCCCCCHHHHHHH
Confidence 4445666655344444444432 22222222221 122335789999999999966443
No 472
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.04 E-value=0.67 Score=40.34 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=29.0
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
..|.-+++.|.||.|||..++-.+.+.+.... ..++|++.
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~Sl 56 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSL 56 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEES
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcC
Confidence 44556899999999999887777776665532 35888886
No 473
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.00 E-value=0.41 Score=37.06 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=26.4
Q ss_pred cccceEEeccccccccCcHHHHHHHHhhC-CCCceEEEEeeecchH
Q 015595 173 TRAIKLLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATLPHE 217 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~ 217 (404)
.-+.++++|++.+...... .+...+... ..+.++|+.|.+....
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~-~L~~~l~~~~~~~~RlI~ss~~~l~~ 113 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQR-RLLDLLKRQERSNVRLIASSSQDLEE 113 (138)
T ss_dssp TTSEEEEECGCCS-HHHHH-HHHHHHHHCTTTTSEEEEEECC-CCC
T ss_pred CCCEEEECChHHCCHHHHH-HHHHHHHhcCCCCeEEEEEeCCCHHH
Confidence 3467789999987665533 344444433 4567888777775443
No 474
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.96 E-value=1.8 Score=38.43 Aligned_cols=55 Identities=15% Similarity=0.309 Sum_probs=30.3
Q ss_pred HHHHHHHHccCCC-ccc-ceEEeccccccccCcHHHHHHHHhhCC---CCceEEEEeeec
Q 015595 160 GRVCDMIKRKTLR-TRA-IKLLDESDEMLSRGFKDQIYDVYRYLP---PDLQVVLISATL 214 (404)
Q Consensus 160 ~~l~~~l~~~~~~-~~~-~vIiDE~h~~~~~~~~~~~~~~~~~~~---~~~~~i~~SAT~ 214 (404)
+.++..++...-. ... +.|+||+|.+........+..++...+ .++-++++|...
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 3444555554322 222 335799998877765666666655443 344455555554
No 475
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.91 E-value=0.24 Score=47.23 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=28.5
Q ss_pred HHHCCCCCCcHHHHHhhhhhhcC-C-cEEEEcCCCCchhhHhHHHHHhhh
Q 015595 48 IYQYGFEKPSAIQQRAVMPIIKG-R-DVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 48 l~~~~~~~~~~~Q~~~~~~~~~~-~-~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
+.+.|+ .+.|.+.+..+... + -++++||||||||..... ++..+
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a-~L~~l 266 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYA-ALSRL 266 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH-HHhcc
Confidence 344454 56677777666553 3 368999999999976543 34444
No 476
>PRK06904 replicative DNA helicase; Validated
Probab=92.85 E-value=1.3 Score=42.22 Aligned_cols=116 Identities=17% Similarity=0.114 Sum_probs=57.8
Q ss_pred hhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcC-cchHHH
Q 015595 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGG-KSVGED 144 (404)
Q Consensus 66 ~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 144 (404)
-+..|.-+++.|.||.|||..++-.+.+.+... +..++|++.- --..|+..++-.... ++....+..+ .-...+
T Consensus 217 Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~--g~~Vl~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~g~~l~~~e 291 (472)
T PRK06904 217 GLQPSDLIIVAARPSMGKTTFAMNLCENAAMAS--EKPVLVFSLE-MPAEQIMMRMLASLS--RVDQTKIRTGQNLDQQD 291 (472)
T ss_pred ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHhccCCCCCHHH
Confidence 344456678899999999976654444443322 2347776542 334555544433221 1222112112 111222
Q ss_pred HH-------HHhcCCCeEEe-----ChHHHHHHHHcc--CCCcccceEEecccccc
Q 015595 145 IR-------KLEHGVHVVSG-----TPGRVCDMIKRK--TLRTRAIKLLDESDEML 186 (404)
Q Consensus 145 ~~-------~~~~~~~iiv~-----T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~ 186 (404)
+. .+....++.|- |...+.....+. .....+++|||=.+.+.
T Consensus 292 ~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 292 WAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 22 22223445552 445554433321 12246899999988775
No 477
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=92.82 E-value=3.2 Score=33.49 Aligned_cols=134 Identities=13% Similarity=0.153 Sum_probs=71.6
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHH-HHHHHccccCeeEEEEEcCc-----chH-HH
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK-VILAIGDFINIQAHACVGGK-----SVG-ED 144 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~-~~~~~~~~~~~~~~~~~~~~-----~~~-~~ 144 (404)
-+.|--..|-|||.+++-.++..+..+.+ ++++==.+.-...-.. .++.. .++.......+. ... ..
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G~r---V~iiQFlKg~~~~GE~~~l~~~---~~v~~~~~g~~~~~~~~~~~~~~ 96 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQGTP---VLIVQFLKGGIQQGPDRPIQLG---QNLDWVRCDLPRCLDTPHLDESE 96 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCCCE---EEEEEEecCCCcchHHHHHHhC---CCcEEEECCCCCeeeCCCcCHHH
Confidence 35677888999999999888888766544 6655422221111111 12221 123322211110 000 00
Q ss_pred HHHHhcCCCeEEeChHHHHHHHHcc-CCCcccceEEeccccccccCc--HHHHHHHHhhCCCCceEEEEeeecchHHHHH
Q 015595 145 IRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEM 221 (404)
Q Consensus 145 ~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~ 221 (404)
.. .....++..... .-..++++|+||+-...+.++ ...+..+++..|...-+|+..-.+++++.++
T Consensus 97 ~~-----------~~~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~ 165 (178)
T PRK07414 97 KK-----------ALQELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAI 165 (178)
T ss_pred HH-----------HHHHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 00 011112222211 235679999999988766653 3556677777777777777777777776665
Q ss_pred H
Q 015595 222 T 222 (404)
Q Consensus 222 ~ 222 (404)
.
T Consensus 166 A 166 (178)
T PRK07414 166 A 166 (178)
T ss_pred C
Confidence 4
No 478
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.81 E-value=0.52 Score=42.59 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=22.4
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCC
Q 015595 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFE 54 (404)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 54 (404)
....+++......++++...+.|++.||.
T Consensus 25 ~~~~~~~~~l~~~g~~~~~~~kL~~~g~~ 53 (344)
T PLN03187 25 EDLFESIDKLISQGINAGDVKKLQDAGIY 53 (344)
T ss_pred hhcccCHHHHhhCCCCHHHHHHHHHcCCC
Confidence 33466667777788999999999988885
No 479
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=1.1 Score=40.84 Aligned_cols=87 Identities=11% Similarity=0.147 Sum_probs=54.0
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhc
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (404)
.-+++.+.+|.|||+..+-.+.... ... ++||++-- +-..|+.-+..+++-..
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA-~~~---~vLYVsGE-ES~~QiklRA~RL~~~~---------------------- 146 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLA-KRG---KVLYVSGE-ESLQQIKLRADRLGLPT---------------------- 146 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHH-hcC---cEEEEeCC-cCHHHHHHHHHHhCCCc----------------------
Confidence 4578999999999977665544443 332 59999884 55777777777654111
Q ss_pred CCCeEEe---ChHHHHHHHHccCCCcccceEEecccccccc
Q 015595 151 GVHVVSG---TPGRVCDMIKRKTLRTRAIKLLDESDEMLSR 188 (404)
Q Consensus 151 ~~~iiv~---T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~ 188 (404)
.++.+. .-+.+...++. ...+++|+|-++.+...
T Consensus 147 -~~l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 147 -NNLYLLAETNLEDIIAELEQ---EKPDLVVIDSIQTLYSE 183 (456)
T ss_pred -cceEEehhcCHHHHHHHHHh---cCCCEEEEeccceeecc
Confidence 122222 22333444443 45588899999987544
No 480
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.77 E-value=0.92 Score=40.76 Aligned_cols=40 Identities=10% Similarity=0.282 Sum_probs=24.9
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
.....++|||++|.+.... .+.+...++.-|....+|++|
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 4567899999999875544 445555555544444444443
No 481
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.74 E-value=0.49 Score=39.01 Aligned_cols=46 Identities=9% Similarity=0.219 Sum_probs=29.4
Q ss_pred CCCcccceEEeccccccccCcHHHHHHHHhh---CCCCceEEEEeeecc
Q 015595 170 TLRTRAIKLLDESDEMLSRGFKDQIYDVYRY---LPPDLQVVLISATLP 215 (404)
Q Consensus 170 ~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~---~~~~~~~i~~SAT~~ 215 (404)
.....+++|+|-...+...+-...+..++.. +...-++|++|+-+.
T Consensus 120 k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~ 168 (235)
T COG2874 120 KRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPS 168 (235)
T ss_pred HhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChh
Confidence 4556689999998876554433344433333 334567999999864
No 482
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.95 Score=44.63 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=28.5
Q ss_pred cccccccCCCCHHHHHHHHH-CCCCCCcHHHHHhhhh-hhcCCcEEEEcCCCCchhhHh
Q 015595 31 AITSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~-~~~~~~~iv~a~tGsGKT~~~ 87 (404)
|..+|++.|=-+.+...+.+ -+. |-.|- +.+-. +.....+++-||+|+|||+.+
T Consensus 667 PnV~WdDVGGLeevK~eIldTIql--PL~hp-eLfssglrkRSGILLYGPPGTGKTLlA 722 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQL--PLKHP-ELFSSGLRKRSGILLYGPPGTGKTLLA 722 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcC--cccCh-hhhhccccccceeEEECCCCCchHHHH
Confidence 34567777655555544433 111 11111 22222 222446899999999999653
No 483
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.59 E-value=0.58 Score=44.92 Aligned_cols=125 Identities=10% Similarity=0.068 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccc-cCee-EEEEEcCcchHHHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF-INIQ-AHACVGGKSVGEDIRKL 148 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~ 148 (404)
+..+...|---|||+... +++..+.+.-.+-++-|++..+-.++-..+++..-... ++-+ +....+
T Consensus 203 kaTVFLVPRRHGKTWf~V-piIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~----------- 270 (668)
T PHA03372 203 KATVFLVPRRHGKTWFII-PIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD----------- 270 (668)
T ss_pred cceEEEecccCCceehHH-HHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC-----------
Confidence 456888999999996544 45555555566678999999987776666665432111 1111 111111
Q ss_pred hcCCCeEEeChH-----HHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHHHhhC-CCCceEEEEeeec
Q 015595 149 EHGVHVVSGTPG-----RVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATL 214 (404)
Q Consensus 149 ~~~~~iiv~T~~-----~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~ 214 (404)
..|.+.-|+ .+......+ .-+.++++++||+|-+.... +..++..+ .++.++|++|.|-
T Consensus 271 ---~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~~a----~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 271 ---NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKKDA----FNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred ---cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCHHH----HHHhhhhhcccCceEEEEeCCC
Confidence 112222211 111111111 35677999999999654333 33333333 3678899999884
No 484
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.54 E-value=0.36 Score=43.71 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=39.0
Q ss_pred HHHHHHCCCCCCcHHHHHhhhhhhc-CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHH
Q 015595 45 LRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (404)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L 113 (404)
.+.+.+.|+ +.+.+...+..+.+ +.+++++++||+|||..... ++..+... .+++++-...++
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~a-l~~~i~~~---~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSA-LLALVAPD---ERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH-HHccCCCC---CcEEEECCccee
Confidence 445555565 45666666665544 57899999999999965432 33333322 346666665554
No 485
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.43 E-value=0.31 Score=52.09 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=47.0
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
..++++|.|+.|||||.+...-++..+..+.....+++++-|+.-+.++.+++.+..
T Consensus 9 p~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L 65 (1141)
T TIGR02784 9 PKTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRL 65 (1141)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 356899999999999998887777777665555689999999999999988877644
No 486
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.41 E-value=0.33 Score=42.96 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=17.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHHh
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
+-+.|.|..|+|||..+...+..
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCH
T ss_pred EEEEEEcCCcCCcceeeeecccc
Confidence 34788999999999877665533
No 487
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.41 E-value=0.21 Score=43.76 Aligned_cols=43 Identities=14% Similarity=0.373 Sum_probs=28.3
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHH
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L 113 (404)
..+.+++++|+||||||.... +++..+... ..+++.+=...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~-all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLN-ALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHH-HHHHHCHTT--TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHHH-HHhhhcccc--ccceEEeccccce
Confidence 346789999999999997654 445555444 2356666665554
No 488
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.40 E-value=1.7 Score=38.17 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=28.5
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeec
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 214 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 214 (404)
....+++|||++|.+.... .+.+.++++.-|+...++++|..+
T Consensus 93 e~~~kv~ii~~ad~mt~~A-aNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLDA-ISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred CCCceEEEEechhhcCHHH-HHHHHHHhhcCCCCeEEEEEeCCh
Confidence 4567899999999876554 556666666645555555555543
No 489
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=92.33 E-value=0.23 Score=48.38 Aligned_cols=68 Identities=22% Similarity=0.081 Sum_probs=52.2
Q ss_pred CcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC---CCceeEEEEcccHHHHHHHHHHHHH
Q 015595 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTRELATQTEKVILA 123 (404)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q~~~~~~~ 123 (404)
+-.-|+.+....+..+-.++++|+|+|||++.+.++-..+... .....++++|-|..-++|....+..
T Consensus 379 ldsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 379 LDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred ecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 4556888888888888889999999999999888776666443 1233589999998888887666643
No 490
>PRK08506 replicative DNA helicase; Provisional
Probab=92.28 E-value=2 Score=41.07 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=57.0
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (404)
+..|.-+++.|.||.|||..++-.+.+.+..+ .+++|++.- .-..|+..++-... .++....+..+.-....+.
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~g---~~V~~fSlE-Ms~~ql~~Rlla~~--s~v~~~~i~~~~l~~~e~~ 262 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQD---KGVAFFSLE-MPAEQLMLRMLSAK--TSIPLQNLRTGDLDDDEWE 262 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhcC---CcEEEEeCc-CCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHHH
Confidence 33456678999999999987776666654332 347777542 23444444443221 1121111111111112221
Q ss_pred HH------hcCCCeEEe-----ChHHHHHHHHcc--CCCcccceEEecccccc
Q 015595 147 KL------EHGVHVVSG-----TPGRVCDMIKRK--TLRTRAIKLLDESDEML 186 (404)
Q Consensus 147 ~~------~~~~~iiv~-----T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~ 186 (404)
.+ .....+.|- |.+.+...+++. ....++++|||=.+.+.
T Consensus 263 ~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 263 RLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 11 122344442 444444433321 12347899999998775
No 491
>PRK12608 transcription termination factor Rho; Provisional
Probab=92.25 E-value=0.98 Score=41.09 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=26.0
Q ss_pred HHHHhhhhhh---cCCcEEEEcCCCCchhhHhHHHHHhhhhcC
Q 015595 59 IQQRAVMPII---KGRDVIAQAQSGTGKTSMIALTVCQTVDTS 98 (404)
Q Consensus 59 ~Q~~~~~~~~---~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~ 98 (404)
.-.+++..+. +|++.+|.|+.|+|||..... ++..+..+
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~-la~~i~~~ 160 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQ-IAAAVAAN 160 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHH-HHHHHHhc
Confidence 3344555544 578899999999999976554 34444443
No 492
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.19 E-value=0.31 Score=41.39 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=35.1
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
+.-+++.+++|+|||..++..+...+..+ .+++|++-.. -.++..+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g---~~~~y~s~e~-~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNG---EKAMYISLEE-REERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCC-CHHHHHHHHHHcC
Confidence 55678999999999987776666555443 3477776643 4566666665543
No 493
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.15 E-value=6.7 Score=37.47 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=75.2
Q ss_pred EEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHH---HH-h
Q 015595 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KL-E 149 (404)
Q Consensus 74 iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~ 149 (404)
+-+.-.+.||+..-++++.+.+..+-+ +.+||.+-+.+.+.|.+..+. .+.++++..++|..+..++.. .+ .
T Consensus 361 V~QelvF~gse~~K~lA~rq~v~~g~~-PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~ 436 (593)
T KOG0344|consen 361 VDQELVFCGSEKGKLLALRQLVASGFK-PPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRI 436 (593)
T ss_pred hhhhheeeecchhHHHHHHHHHhccCC-CCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhc
Confidence 334445788888888888888776644 569999999999999998886 355788889998866544322 22 2
Q ss_pred cCCCeEEeChHHHHHHHHcc-CCCcccceEEecccc
Q 015595 150 HGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDE 184 (404)
Q Consensus 150 ~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~ 184 (404)
....++||| +++.+. .+...++||-+++-.
T Consensus 437 g~IwvLicT-----dll~RGiDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 437 GKIWVLICT-----DLLARGIDFKGVNLVINYDFPQ 467 (593)
T ss_pred cCeeEEEeh-----hhhhccccccCcceEEecCCCc
Confidence 457899999 777776 688889999866654
No 494
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=91.95 E-value=0.62 Score=35.01 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=32.7
Q ss_pred EEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc-----ccHHHHHHHHHHHHH
Q 015595 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS-----PTRELATQTEKVILA 123 (404)
Q Consensus 74 iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-----p~~~L~~q~~~~~~~ 123 (404)
-+.|+||+|||.++-+.+-+....+.+...+-... |....+.+..+++++
T Consensus 57 SfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~ 111 (127)
T PF06309_consen 57 SFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKS 111 (127)
T ss_pred EeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHH
Confidence 37999999999998887777666655544444433 444555555555554
No 495
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.95 E-value=0.26 Score=39.58 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=16.8
Q ss_pred CcccceEEecccccc--ccCcHHHHHHHHh
Q 015595 172 RTRAIKLLDESDEML--SRGFKDQIYDVYR 199 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~--~~~~~~~~~~~~~ 199 (404)
...+++|+||+=.+- ...|...+..++.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 456799999998653 4456777777766
No 496
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.93 E-value=0.4 Score=39.48 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=34.9
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcC-------CCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTS-------SREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~-------~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
.|.-.++.|++|+|||...+-.+...+... ..+.+++|+..-.. ..++.+.+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 466689999999999987776666555311 13457888876544 556666666654
No 497
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.87 E-value=0.41 Score=47.28 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=31.8
Q ss_pred cCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeec
Q 015595 169 KTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 214 (404)
Q Consensus 169 ~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 214 (404)
..+.+.+++|+||+-.-++......+...+....++.-+|..|--+
T Consensus 499 All~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl 544 (588)
T PRK11174 499 ALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQL 544 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 3456678999999999888877777776666654455455555443
No 498
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.85 E-value=0.31 Score=46.70 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=38.0
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhc-CCCceeEEEEcccHHHHHHHHHHHHHHcc
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIGD 126 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 126 (404)
+++.++|.+++|+|||..++..+.+-+.. +. +++|++-- +-..+..+....++.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge---~~lyvs~e-E~~~~l~~~~~~~G~ 74 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE---PGVFVTFE-ESPQDIIKNARSFGW 74 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEe-cCHHHHHHHHHHcCC
Confidence 45678999999999998887776665544 33 37777753 556666666666653
No 499
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=91.79 E-value=1.3 Score=36.32 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=43.6
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhc
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 225 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 225 (404)
..+.+++|+||--.=++-.....+..++..+++.-+.+.+|.-.-+++..++...
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheE
Confidence 5677899999998877777788888888888887778888888777777766553
No 500
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=0.81 Score=44.22 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=35.6
Q ss_pred ccccccccCCCCHHHHHHHHHC-C-CCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHh
Q 015595 30 EAITSFDAMGIKDDLLRGIYQY-G-FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~-~-~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~ 87 (404)
....+|.+..=.+...+.+.+. . ...|..||.-.- . --+.+++.+|+|+|||+.+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa-k--iPkGvlLvGpPGTGKTLLA 200 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGA-K--IPKGVLLVGPPGTGKTLLA 200 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhccc-c--cccceeEecCCCCCcHHHH
Confidence 5567787765545555555542 2 335788876543 1 2356999999999999543
Done!