Query 015595
Match_columns 404
No_of_seqs 178 out of 2143
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 15:21:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0s_A ATP-dependent RNA helic 100.0 4.1E-62 1.4E-66 455.3 41.3 388 17-404 21-410 (410)
2 2db3_A ATP-dependent RNA helic 100.0 1.5E-61 5E-66 452.5 44.2 380 22-403 45-434 (434)
3 3eiq_A Eukaryotic initiation f 100.0 2E-60 6.8E-65 444.7 37.6 379 26-404 33-414 (414)
4 2i4i_A ATP-dependent RNA helic 100.0 2.9E-59 9.9E-64 437.2 39.4 378 25-403 7-409 (417)
5 1s2m_A Putative ATP-dependent 100.0 1.1E-58 3.6E-63 431.0 41.8 371 31-403 19-391 (400)
6 1xti_A Probable ATP-dependent 100.0 7.2E-57 2.5E-61 417.5 41.3 368 33-401 8-382 (391)
7 1fuu_A Yeast initiation factor 100.0 5.4E-59 1.9E-63 432.2 22.0 375 29-404 17-393 (394)
8 3fht_A ATP-dependent RNA helic 100.0 3.9E-56 1.3E-60 415.5 38.7 372 26-400 18-403 (412)
9 3pey_A ATP-dependent RNA helic 100.0 1.1E-55 3.6E-60 410.3 39.6 364 31-398 3-379 (395)
10 1hv8_A Putative ATP-dependent 100.0 5.8E-55 2E-59 401.3 41.7 359 32-398 5-366 (367)
11 3sqw_A ATP-dependent RNA helic 100.0 1.8E-53 6.2E-58 412.3 38.5 367 29-395 13-416 (579)
12 3fmp_B ATP-dependent RNA helic 100.0 1.1E-55 3.7E-60 419.4 21.8 367 31-400 90-470 (479)
13 3i5x_A ATP-dependent RNA helic 100.0 1.7E-52 5.9E-57 405.5 38.8 356 40-395 79-467 (563)
14 2z0m_A 337AA long hypothetical 100.0 1E-51 3.5E-56 375.2 36.1 334 40-391 1-336 (337)
15 3fho_A ATP-dependent RNA helic 100.0 5.8E-54 2E-58 408.5 20.3 366 31-400 117-494 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 2.2E-50 7.5E-55 387.2 34.6 340 33-384 21-381 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 8.4E-49 2.9E-53 372.7 34.3 337 33-386 2-352 (523)
18 3oiy_A Reverse gyrase helicase 100.0 4.2E-49 1.4E-53 367.5 24.1 332 44-397 10-385 (414)
19 2zj8_A DNA helicase, putative 100.0 3.7E-46 1.3E-50 369.7 28.2 349 34-398 2-406 (720)
20 2va8_A SSO2462, SKI2-type heli 100.0 2.1E-45 7E-50 364.7 32.8 334 31-379 6-410 (715)
21 2ykg_A Probable ATP-dependent 100.0 1E-46 3.5E-51 374.1 20.6 352 45-398 3-541 (696)
22 2p6r_A Afuhel308 helicase; pro 100.0 7.3E-46 2.5E-50 366.7 22.7 331 34-379 2-390 (702)
23 4a2p_A RIG-I, retinoic acid in 100.0 2E-45 6.9E-50 356.2 24.0 329 52-382 4-513 (556)
24 3tbk_A RIG-I helicase domain; 100.0 1.6E-44 5.4E-49 349.9 29.2 327 55-385 4-515 (555)
25 3l9o_A ATP-dependent RNA helic 100.0 7.1E-45 2.4E-49 369.9 26.5 346 33-396 162-614 (1108)
26 1wp9_A ATP-dependent RNA helic 100.0 7.9E-44 2.7E-48 339.7 31.4 322 55-381 9-479 (494)
27 4a2q_A RIG-I, retinoic acid in 100.0 5.9E-44 2E-48 357.3 29.2 330 50-381 243-753 (797)
28 2xgj_A ATP-dependent RNA helic 100.0 5.2E-43 1.8E-47 353.4 34.2 318 49-383 81-506 (1010)
29 4ddu_A Reverse gyrase; topoiso 100.0 8.8E-44 3E-48 361.8 25.6 320 51-390 75-503 (1104)
30 1gku_B Reverse gyrase, TOP-RG; 100.0 1.3E-44 4.6E-49 368.2 19.0 320 50-391 53-468 (1054)
31 4a2w_A RIG-I, retinoic acid in 100.0 4.2E-43 1.4E-47 354.5 27.6 329 51-381 244-753 (936)
32 4a4z_A Antiviral helicase SKI2 100.0 2.3E-41 7.8E-46 341.4 29.4 309 51-375 36-490 (997)
33 1gm5_A RECG; helicase, replica 100.0 3.6E-42 1.2E-46 336.9 22.5 326 42-385 356-705 (780)
34 4gl2_A Interferon-induced heli 100.0 3E-42 1E-46 342.3 19.7 321 55-378 7-520 (699)
35 4f92_B U5 small nuclear ribonu 100.0 2.5E-40 8.7E-45 347.6 33.1 340 40-385 911-1316(1724)
36 2oca_A DAR protein, ATP-depend 100.0 2E-42 6.8E-47 331.0 15.2 309 55-375 113-453 (510)
37 2eyq_A TRCF, transcription-rep 100.0 9.1E-40 3.1E-44 334.5 33.9 323 39-378 587-923 (1151)
38 4f92_B U5 small nuclear ribonu 100.0 1.1E-40 3.7E-45 350.3 25.2 339 40-385 66-481 (1724)
39 1tf5_A Preprotein translocase 100.0 1E-39 3.6E-44 313.5 29.2 320 50-379 79-547 (844)
40 2fwr_A DNA repair protein RAD2 100.0 3.1E-40 1.1E-44 312.8 18.1 296 55-380 93-457 (472)
41 2xau_A PRE-mRNA-splicing facto 100.0 3.7E-39 1.3E-43 317.8 20.2 336 29-379 68-445 (773)
42 2whx_A Serine protease/ntpase/ 100.0 5.8E-40 2E-44 315.9 13.9 322 38-398 155-502 (618)
43 2fsf_A Preprotein translocase 100.0 1.1E-37 3.6E-42 298.8 26.8 319 51-379 71-585 (853)
44 1nkt_A Preprotein translocase 100.0 1.2E-36 4E-41 291.9 31.4 322 50-381 107-621 (922)
45 2jlq_A Serine protease subunit 100.0 2.2E-38 7.5E-43 296.5 18.4 286 52-376 1-310 (451)
46 1yks_A Genome polyprotein [con 100.0 9.2E-40 3.1E-44 304.3 8.1 287 66-399 4-324 (440)
47 2wv9_A Flavivirin protease NS2 100.0 4.9E-38 1.7E-42 304.2 17.2 316 47-400 202-559 (673)
48 3h1t_A Type I site-specific re 100.0 1.6E-37 5.6E-42 301.6 18.1 308 55-377 178-558 (590)
49 3o8b_A HCV NS3 protease/helica 100.0 9.4E-38 3.2E-42 297.6 15.1 292 55-396 217-537 (666)
50 3dmq_A RNA polymerase-associat 100.0 1.6E-36 5.6E-41 306.8 22.7 333 55-392 153-628 (968)
51 2z83_A Helicase/nucleoside tri 100.0 5.5E-37 1.9E-41 287.4 17.0 275 64-377 15-313 (459)
52 2v6i_A RNA helicase; membrane, 100.0 4.2E-36 1.4E-40 279.2 22.5 268 69-374 1-288 (431)
53 3fe2_A Probable ATP-dependent 100.0 2.6E-35 8.9E-40 253.6 23.5 215 23-237 19-240 (242)
54 1z63_A Helicase of the SNF2/RA 100.0 1.2E-34 4E-39 276.5 25.7 312 55-380 37-456 (500)
55 3ber_A Probable ATP-dependent 100.0 1.2E-34 4.1E-39 249.9 22.3 206 29-234 39-247 (249)
56 3bor_A Human initiation factor 100.0 6.6E-35 2.3E-39 250.1 20.3 210 25-234 22-234 (237)
57 1vec_A ATP-dependent RNA helic 100.0 3.1E-34 1.1E-38 241.1 23.8 200 33-232 3-205 (206)
58 1qde_A EIF4A, translation init 100.0 2.5E-34 8.7E-39 244.8 21.8 210 27-237 8-219 (224)
59 1wrb_A DJVLGB; RNA helicase, D 100.0 2.5E-34 8.5E-39 249.4 20.7 217 30-246 20-251 (253)
60 1q0u_A Bstdead; DEAD protein, 100.0 1.9E-34 6.3E-39 244.6 19.3 204 32-235 3-212 (219)
61 3iuy_A Probable ATP-dependent 100.0 3.6E-34 1.2E-38 244.4 21.1 208 25-233 11-227 (228)
62 2oxc_A Probable ATP-dependent 100.0 1.1E-33 3.9E-38 241.4 22.7 205 28-233 19-227 (230)
63 1z3i_X Similar to RAD54-like; 100.0 2.8E-32 9.7E-37 265.6 35.2 321 55-380 55-531 (644)
64 3mwy_W Chromo domain-containin 100.0 3.5E-33 1.2E-37 278.7 28.3 327 55-387 236-696 (800)
65 3rc3_A ATP-dependent RNA helic 100.0 7.2E-34 2.5E-38 274.2 22.1 282 66-385 151-452 (677)
66 2pl3_A Probable ATP-dependent 100.0 4.8E-33 1.6E-37 238.8 23.4 206 29-235 21-233 (236)
67 2gxq_A Heat resistant RNA depe 100.0 6.2E-33 2.1E-37 233.3 23.2 199 34-234 2-205 (207)
68 1t6n_A Probable ATP-dependent 100.0 5.1E-33 1.8E-37 236.0 22.5 201 33-233 14-219 (220)
69 3fmo_B ATP-dependent RNA helic 100.0 6.4E-33 2.2E-37 245.2 21.3 203 30-235 89-298 (300)
70 3ly5_A ATP-dependent RNA helic 100.0 1.4E-32 4.9E-37 238.8 21.0 198 33-230 52-258 (262)
71 3jux_A Protein translocase sub 100.0 4.5E-31 1.5E-35 248.1 32.0 317 51-380 72-590 (822)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.2E-32 7.4E-37 274.6 22.2 309 55-375 271-707 (1038)
73 3dkp_A Probable ATP-dependent 100.0 3E-32 1E-36 235.2 18.9 215 23-237 15-243 (245)
74 1fuk_A Eukaryotic initiation f 100.0 5.3E-29 1.8E-33 200.7 19.8 163 242-404 2-164 (165)
75 2rb4_A ATP-dependent RNA helic 100.0 2.6E-28 8.9E-33 198.7 19.2 164 239-402 3-172 (175)
76 2hjv_A ATP-dependent RNA helic 100.0 4.1E-28 1.4E-32 195.0 19.6 158 239-397 5-162 (163)
77 2p6n_A ATP-dependent RNA helic 100.0 1.4E-28 4.7E-33 202.3 16.7 179 223-403 9-188 (191)
78 1t5i_A C_terminal domain of A 100.0 2.8E-28 9.5E-33 197.5 16.7 160 241-401 3-163 (172)
79 2jgn_A DBX, DDX3, ATP-dependen 100.0 3E-28 1E-32 199.5 15.1 165 238-403 14-179 (185)
80 2ipc_A Preprotein translocase 100.0 9.8E-26 3.4E-30 216.0 32.0 315 51-379 76-700 (997)
81 1c4o_A DNA nucleotide excision 100.0 7.3E-27 2.5E-31 227.2 23.4 118 269-387 438-560 (664)
82 3eaq_A Heat resistant RNA depe 99.9 1.5E-26 5E-31 193.9 17.8 153 246-399 8-160 (212)
83 2d7d_A Uvrabc system protein B 99.9 4.4E-25 1.5E-29 214.6 27.6 131 269-400 444-588 (661)
84 3i32_A Heat resistant RNA depe 99.9 1.1E-25 3.9E-30 197.0 18.6 155 244-399 3-157 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 1.5E-27 5.3E-32 193.0 0.0 156 243-398 3-158 (170)
86 3b6e_A Interferon-induced heli 99.9 2.2E-24 7.4E-29 182.4 10.8 162 51-213 29-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 7.9E-23 2.7E-27 195.1 17.4 111 260-377 375-521 (540)
88 3crv_A XPD/RAD3 related DNA he 99.9 1.6E-20 5.6E-25 179.8 26.7 305 55-377 3-531 (551)
89 1rif_A DAR protein, DNA helica 99.9 1.2E-22 4.2E-27 178.5 9.4 153 55-217 113-265 (282)
90 3llm_A ATP-dependent RNA helic 99.9 1.1E-20 3.8E-25 161.2 15.4 160 52-218 58-222 (235)
91 2fz4_A DNA repair protein RAD2 99.8 4.4E-20 1.5E-24 157.2 15.2 138 55-217 93-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 5.7E-19 1.9E-23 170.3 21.1 111 261-376 440-583 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 7.8E-19 2.7E-23 151.9 12.9 127 254-380 94-227 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 2.4E-08 8.1E-13 96.4 9.8 145 57-213 151-298 (608)
95 3e1s_A Exodeoxyribonuclease V, 98.5 8.8E-07 3E-11 84.6 12.5 127 55-213 189-315 (574)
96 3upu_A ATP-dependent DNA helic 98.5 8.4E-07 2.9E-11 82.9 11.7 71 49-121 19-94 (459)
97 3lfu_A DNA helicase II; SF1 he 98.5 2E-05 6.9E-10 77.1 21.6 70 54-125 8-78 (647)
98 4b3f_X DNA-binding protein smu 98.4 5E-07 1.7E-11 88.2 8.3 67 55-124 189-256 (646)
99 2xzl_A ATP-dependent helicase 98.4 3.4E-06 1.1E-10 83.7 13.8 68 55-124 360-427 (802)
100 2gk6_A Regulator of nonsense t 98.4 3.7E-06 1.3E-10 81.6 13.7 69 54-124 179-247 (624)
101 2wjy_A Regulator of nonsense t 98.2 9.2E-06 3.1E-10 80.5 12.5 68 55-124 356-423 (800)
102 3hgt_A HDA1 complex subunit 3; 98.1 4.7E-05 1.6E-09 66.0 12.9 121 255-380 108-240 (328)
103 2o0j_A Terminase, DNA packagin 97.7 0.0011 3.8E-08 59.6 14.9 70 55-125 163-232 (385)
104 3vkw_A Replicase large subunit 97.5 0.00032 1.1E-08 63.9 8.9 107 72-213 163-269 (446)
105 3ec2_A DNA replication protein 97.4 0.00081 2.8E-08 53.9 8.7 23 69-91 37-59 (180)
106 3cpe_A Terminase, DNA packagin 97.3 0.0017 5.9E-08 62.5 12.2 72 55-127 163-234 (592)
107 2orw_A Thymidine kinase; TMTK, 97.3 0.00095 3.2E-08 53.6 8.5 39 70-111 3-41 (184)
108 1a5t_A Delta prime, HOLB; zinc 97.3 0.00066 2.3E-08 60.4 8.3 39 56-94 3-48 (334)
109 1xx6_A Thymidine kinase; NESG, 97.3 0.00083 2.8E-08 54.2 7.9 39 70-111 8-46 (191)
110 1uaa_A REP helicase, protein ( 97.3 0.00047 1.6E-08 67.6 7.7 69 55-125 2-71 (673)
111 1pjr_A PCRA; DNA repair, DNA r 97.2 0.00088 3E-08 66.2 8.5 70 54-125 10-80 (724)
112 2b8t_A Thymidine kinase; deoxy 97.2 0.0011 3.8E-08 54.8 7.6 111 70-211 12-123 (223)
113 2kjq_A DNAA-related protein; s 97.1 0.00047 1.6E-08 53.3 4.4 23 69-91 35-57 (149)
114 3te6_A Regulatory protein SIR3 97.1 0.0057 2E-07 53.4 11.7 22 70-91 45-66 (318)
115 1l8q_A Chromosomal replication 97.1 0.0042 1.4E-07 54.9 11.0 21 70-90 37-57 (324)
116 3u4q_A ATP-dependent helicase/ 97.0 0.0012 4.1E-08 69.1 8.2 68 55-124 10-80 (1232)
117 2j9r_A Thymidine kinase; TK1, 97.0 0.0016 5.4E-08 53.1 6.9 40 70-112 28-67 (214)
118 2chg_A Replication factor C sm 97.0 0.0081 2.8E-07 49.5 11.6 41 172-213 101-141 (226)
119 3h4m_A Proteasome-activating n 96.9 0.0015 5.1E-08 56.6 6.5 56 32-89 13-70 (285)
120 3n70_A Transport activator; si 96.8 0.0085 2.9E-07 45.8 9.4 38 175-213 78-115 (145)
121 4b4t_J 26S protease regulatory 96.8 0.0013 4.6E-08 59.1 5.3 55 31-88 143-200 (405)
122 1w4r_A Thymidine kinase; type 96.8 0.0056 1.9E-07 49.0 8.2 38 70-110 20-57 (195)
123 3kl4_A SRP54, signal recogniti 96.7 0.013 4.6E-07 53.4 11.5 130 72-225 99-234 (433)
124 2orv_A Thymidine kinase; TP4A 96.7 0.0049 1.7E-07 50.7 7.5 40 70-112 19-58 (234)
125 2z4s_A Chromosomal replication 96.6 0.0054 1.8E-07 56.6 8.3 39 70-109 130-168 (440)
126 3e2i_A Thymidine kinase; Zn-bi 96.6 0.0038 1.3E-07 50.7 6.3 40 70-112 28-67 (219)
127 3co5_A Putative two-component 96.6 0.013 4.6E-07 44.6 9.2 20 68-87 25-44 (143)
128 3syl_A Protein CBBX; photosynt 96.5 0.0049 1.7E-07 54.0 7.1 19 71-89 68-86 (309)
129 3cf0_A Transitional endoplasmi 96.5 0.0056 1.9E-07 53.4 7.4 58 31-89 10-68 (301)
130 3eie_A Vacuolar protein sortin 96.5 0.004 1.4E-07 54.9 6.5 55 32-89 14-70 (322)
131 1d2n_A N-ethylmaleimide-sensit 96.5 0.012 4.1E-07 50.4 9.3 20 71-90 65-84 (272)
132 3u61_B DNA polymerase accessor 96.5 0.016 5.5E-07 51.1 10.2 39 173-211 105-143 (324)
133 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0054 1.9E-07 54.1 6.8 56 31-89 7-64 (322)
134 4b4t_M 26S protease regulatory 96.4 0.0011 3.6E-08 60.6 2.0 57 29-88 174-233 (434)
135 2w58_A DNAI, primosome compone 96.4 0.021 7.2E-07 46.3 9.7 21 71-91 55-75 (202)
136 2zpa_A Uncharacterized protein 96.4 0.013 4.6E-07 56.2 9.5 112 55-214 175-288 (671)
137 4b4t_I 26S protease regulatory 96.3 0.005 1.7E-07 55.7 5.9 58 29-89 175-235 (437)
138 4b4t_K 26S protease regulatory 96.3 0.0087 3E-07 54.5 7.5 57 30-89 166-225 (428)
139 1jbk_A CLPB protein; beta barr 96.3 0.059 2E-06 42.9 12.0 20 71-90 44-63 (195)
140 2qby_B CDC6 homolog 3, cell di 96.3 0.012 4.2E-07 53.2 8.5 22 70-91 45-66 (384)
141 4b4t_L 26S protease subunit RP 96.2 0.0019 6.6E-08 59.0 2.8 57 30-89 175-234 (437)
142 4b4t_H 26S protease regulatory 96.2 0.0034 1.2E-07 57.4 4.4 56 30-88 203-261 (467)
143 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.016 5.5E-07 49.2 8.4 54 33-89 3-58 (262)
144 3dm5_A SRP54, signal recogniti 96.2 0.04 1.4E-06 50.3 10.9 128 72-223 102-233 (443)
145 2v1u_A Cell division control p 96.0 0.026 9E-07 50.9 9.4 22 70-91 44-65 (387)
146 2qp9_X Vacuolar protein sortin 96.0 0.013 4.3E-07 52.5 7.0 21 70-90 84-104 (355)
147 1iqp_A RFCS; clamp loader, ext 96.0 0.027 9.1E-07 49.6 9.1 38 173-211 110-147 (327)
148 3bos_A Putative DNA replicatio 96.0 0.011 3.6E-07 49.5 6.1 23 69-91 51-73 (242)
149 2gno_A DNA polymerase III, gam 96.0 0.037 1.3E-06 48.2 9.5 40 171-211 80-119 (305)
150 1sxj_D Activator 1 41 kDa subu 96.0 0.011 3.7E-07 52.8 6.3 40 172-212 132-171 (353)
151 2p65_A Hypothetical protein PF 96.0 0.018 6.2E-07 45.8 7.1 22 70-91 43-64 (187)
152 2zan_A Vacuolar protein sortin 95.9 0.016 5.5E-07 53.6 7.4 57 30-89 128-186 (444)
153 2dr3_A UPF0273 protein PH0284; 95.9 0.025 8.7E-07 47.4 8.1 51 68-122 21-71 (247)
154 3vfd_A Spastin; ATPase, microt 95.9 0.019 6.4E-07 52.2 7.7 20 70-89 148-167 (389)
155 1sxj_E Activator 1 40 kDa subu 95.9 0.033 1.1E-06 49.7 9.1 41 173-214 134-174 (354)
156 3b9p_A CG5977-PA, isoform A; A 95.8 0.028 9.7E-07 48.8 8.2 55 32-89 17-73 (297)
157 1g5t_A COB(I)alamin adenosyltr 95.7 0.051 1.7E-06 43.5 8.5 136 70-222 28-171 (196)
158 1fnn_A CDC6P, cell division co 95.6 0.021 7.1E-07 51.7 6.9 18 72-89 46-63 (389)
159 2qby_A CDC6 homolog 1, cell di 95.6 0.042 1.4E-06 49.5 8.9 21 70-90 45-65 (386)
160 1njg_A DNA polymerase III subu 95.6 0.098 3.4E-06 43.4 10.6 19 72-90 47-65 (250)
161 3hu3_A Transitional endoplasmi 95.6 0.022 7.6E-07 53.1 6.9 42 175-216 299-350 (489)
162 1sxj_B Activator 1 37 kDa subu 95.3 0.024 8.3E-07 49.7 6.0 37 174-211 108-144 (323)
163 2bjv_A PSP operon transcriptio 95.2 0.089 3E-06 44.7 9.1 21 69-89 28-48 (265)
164 2w0m_A SSO2452; RECA, SSPF, un 95.2 0.063 2.2E-06 44.5 8.1 40 67-109 20-59 (235)
165 3pvs_A Replication-associated 95.2 0.046 1.6E-06 50.4 7.5 19 71-89 51-69 (447)
166 1lv7_A FTSH; alpha/beta domain 95.1 0.19 6.4E-06 42.4 10.9 55 32-89 8-64 (257)
167 3uk6_A RUVB-like 2; hexameric 94.9 0.73 2.5E-05 41.0 14.8 21 70-90 70-90 (368)
168 1sxj_C Activator 1 40 kDa subu 94.9 0.075 2.6E-06 47.1 7.9 38 173-211 110-147 (340)
169 3cf2_A TER ATPase, transitiona 94.8 0.015 5E-07 57.4 3.3 18 71-88 239-256 (806)
170 1gm5_A RECG; helicase, replica 94.8 0.086 2.9E-06 52.2 8.7 75 270-344 417-496 (780)
171 1jr3_A DNA polymerase III subu 94.5 0.075 2.5E-06 47.7 7.1 39 172-211 118-156 (373)
172 3cf2_A TER ATPase, transitiona 94.4 0.08 2.7E-06 52.3 7.4 55 31-88 472-529 (806)
173 3d8b_A Fidgetin-like protein 1 94.4 0.056 1.9E-06 48.3 5.8 21 70-90 117-137 (357)
174 3pfi_A Holliday junction ATP-d 94.3 0.13 4.5E-06 45.4 8.1 20 71-90 56-75 (338)
175 1sxj_A Activator 1 95 kDa subu 94.3 0.13 4.4E-06 48.5 8.4 40 173-214 148-189 (516)
176 2chq_A Replication factor C sm 94.3 0.031 1E-06 49.0 3.9 19 72-90 40-58 (319)
177 2ce7_A Cell division protein F 94.2 0.076 2.6E-06 49.2 6.5 56 31-89 11-68 (476)
178 1ls1_A Signal recognition part 94.2 0.65 2.2E-05 40.1 12.1 36 70-108 98-133 (295)
179 2q6t_A DNAB replication FORK h 94.2 0.16 5.4E-06 46.9 8.6 40 68-109 198-237 (444)
180 1ojl_A Transcriptional regulat 94.2 0.17 5.9E-06 44.0 8.3 21 69-89 24-44 (304)
181 2px0_A Flagellar biosynthesis 94.0 0.25 8.6E-06 42.7 9.0 25 70-94 105-129 (296)
182 1w5s_A Origin recognition comp 94.0 0.34 1.2E-05 43.9 10.4 21 71-91 51-73 (412)
183 2r6a_A DNAB helicase, replicat 93.9 0.26 9E-06 45.5 9.5 41 67-109 200-240 (454)
184 4a1f_A DNAB helicase, replicat 93.8 0.084 2.9E-06 46.5 5.7 40 67-109 43-82 (338)
185 1hqc_A RUVB; extended AAA-ATPa 93.5 0.16 5.5E-06 44.5 7.0 20 70-89 38-57 (324)
186 3hr8_A Protein RECA; alpha and 93.4 0.092 3.1E-06 46.6 5.2 41 70-113 61-101 (356)
187 1n0w_A DNA repair protein RAD5 93.3 0.37 1.3E-05 40.0 8.7 42 68-109 22-66 (243)
188 3oiy_A Reverse gyrase helicase 93.2 0.21 7.2E-06 45.5 7.6 77 268-344 62-145 (414)
189 1vma_A Cell division protein F 92.5 0.45 1.5E-05 41.3 8.1 22 72-93 106-127 (306)
190 2fna_A Conserved hypothetical 92.4 4.6 0.00016 35.4 15.1 20 71-90 31-50 (357)
191 3e70_C DPA, signal recognition 91.8 1.1 3.9E-05 39.2 10.0 53 173-225 211-264 (328)
192 2ffh_A Protein (FFH); SRP54, s 91.2 3.2 0.00011 37.7 12.5 34 72-108 100-133 (425)
193 1qvr_A CLPB protein; coiled co 91.0 0.55 1.9E-05 47.3 8.1 21 71-91 192-212 (854)
194 3m6a_A ATP-dependent protease 90.9 0.43 1.5E-05 45.2 6.9 21 69-89 107-127 (543)
195 2qgz_A Helicase loader, putati 90.9 0.24 8.1E-06 43.1 4.7 26 70-95 152-177 (308)
196 2eyq_A TRCF, transcription-rep 90.8 0.83 2.8E-05 47.5 9.3 76 269-344 651-731 (1151)
197 1j8m_F SRP54, signal recogniti 90.7 2.9 9.9E-05 36.0 11.4 34 72-108 100-133 (297)
198 3pxi_A Negative regulator of g 90.6 0.19 6.3E-06 50.0 4.2 19 72-90 523-541 (758)
199 2xxa_A Signal recognition part 90.5 2.2 7.4E-05 39.0 10.9 35 72-108 102-136 (433)
200 3ber_A Probable ATP-dependent 90.5 1.9 6.4E-05 36.0 9.8 76 265-344 106-192 (249)
201 1r6b_X CLPA protein; AAA+, N-t 90.3 0.62 2.1E-05 46.2 7.7 21 70-90 207-227 (758)
202 3io5_A Recombination and repai 90.1 0.25 8.6E-06 42.8 4.0 42 72-114 30-71 (333)
203 1t6n_A Probable ATP-dependent 90.0 2 6.8E-05 34.9 9.5 72 270-344 82-164 (220)
204 4ddu_A Reverse gyrase; topoiso 89.5 0.69 2.4E-05 47.8 7.4 77 268-344 119-202 (1104)
205 1ypw_A Transitional endoplasmi 89.5 0.28 9.5E-06 49.0 4.4 21 69-89 237-257 (806)
206 2oap_1 GSPE-2, type II secreti 89.3 0.85 2.9E-05 42.7 7.4 47 46-95 237-284 (511)
207 2l8b_A Protein TRAI, DNA helic 89.1 0.38 1.3E-05 37.7 4.0 121 56-213 35-158 (189)
208 3b85_A Phosphate starvation-in 89.1 0.44 1.5E-05 38.7 4.6 35 56-90 8-42 (208)
209 2j37_W Signal recognition part 89.0 4.4 0.00015 37.7 11.8 35 72-109 103-137 (504)
210 1oyw_A RECQ helicase, ATP-depe 88.8 1.1 3.7E-05 42.3 7.7 59 270-328 65-123 (523)
211 2hjv_A ATP-dependent RNA helic 88.7 1.5 5.1E-05 33.8 7.4 69 102-179 36-109 (163)
212 2x8a_A Nuclear valosin-contain 88.7 0.13 4.6E-06 43.9 1.4 55 31-88 5-62 (274)
213 2zts_A Putative uncharacterize 88.6 0.28 9.6E-06 40.9 3.3 50 70-122 30-79 (251)
214 2dhr_A FTSH; AAA+ protein, hex 88.5 0.56 1.9E-05 43.7 5.5 56 31-89 26-83 (499)
215 1w36_B RECB, exodeoxyribonucle 88.4 0.82 2.8E-05 47.8 7.2 54 71-124 17-79 (1180)
216 2p6n_A ATP-dependent RNA helic 88.1 6.1 0.00021 31.3 10.8 69 102-179 55-128 (191)
217 3bh0_A DNAB-like replicative h 87.9 0.44 1.5E-05 41.6 4.2 52 67-122 65-116 (315)
218 1p9r_A General secretion pathw 87.8 0.73 2.5E-05 41.9 5.7 32 58-89 153-186 (418)
219 2yhs_A FTSY, cell division pro 87.6 4.4 0.00015 37.5 10.6 19 72-90 295-313 (503)
220 1e9r_A Conjugal transfer prote 87.6 0.45 1.5E-05 43.7 4.3 44 69-115 52-95 (437)
221 3u4q_B ATP-dependent helicase/ 87.6 0.36 1.2E-05 50.4 4.0 39 73-111 4-42 (1166)
222 1fuk_A Eukaryotic initiation f 87.6 2.2 7.6E-05 32.8 7.7 70 101-179 30-104 (165)
223 3hws_A ATP-dependent CLP prote 87.5 0.91 3.1E-05 40.4 6.1 20 70-89 51-70 (363)
224 2qmh_A HPR kinase/phosphorylas 87.4 0.29 9.8E-06 39.2 2.4 22 70-91 34-55 (205)
225 2v1x_A ATP-dependent DNA helic 87.4 1.2 4E-05 42.7 7.1 59 270-328 84-144 (591)
226 1t5i_A C_terminal domain of A 87.3 4 0.00014 31.7 9.1 69 102-179 32-105 (172)
227 2i1q_A DNA repair and recombin 87.1 0.75 2.6E-05 40.2 5.2 54 71-124 99-166 (322)
228 1u94_A RECA protein, recombina 86.8 0.62 2.1E-05 41.4 4.5 39 69-110 62-100 (356)
229 2zr9_A Protein RECA, recombina 86.7 0.59 2E-05 41.4 4.3 39 69-110 60-98 (349)
230 1kgd_A CASK, peripheral plasma 86.7 0.39 1.3E-05 37.9 2.9 21 69-89 4-24 (180)
231 4ag6_A VIRB4 ATPase, type IV s 86.5 0.75 2.5E-05 41.5 5.0 41 69-112 34-74 (392)
232 2cvh_A DNA repair and recombin 86.3 0.42 1.4E-05 38.9 3.0 36 68-109 18-53 (220)
233 4akg_A Glutathione S-transfera 86.2 1.3 4.6E-05 49.8 7.5 50 41-91 891-944 (2695)
234 3eaq_A Heat resistant RNA depe 86.1 2.2 7.5E-05 34.6 7.2 68 102-178 32-104 (212)
235 2eyu_A Twitching motility prot 86.1 0.37 1.3E-05 40.7 2.6 23 67-89 22-44 (261)
236 3vaa_A Shikimate kinase, SK; s 86.0 0.44 1.5E-05 38.3 2.9 23 69-91 24-46 (199)
237 2r2a_A Uncharacterized protein 86.0 0.57 2E-05 37.7 3.5 23 72-94 7-29 (199)
238 2l82_A Designed protein OR32; 85.9 4.7 0.00016 27.9 7.4 115 273-392 5-128 (162)
239 1ixz_A ATP-dependent metallopr 85.9 0.41 1.4E-05 40.2 2.8 56 31-89 11-68 (254)
240 3nbx_X ATPase RAVA; AAA+ ATPas 85.9 0.92 3.1E-05 42.3 5.3 32 57-88 28-59 (500)
241 3fe2_A Probable ATP-dependent 85.8 3.6 0.00012 34.0 8.6 72 269-344 101-182 (242)
242 3i5x_A ATP-dependent RNA helic 85.8 4.8 0.00016 38.1 10.5 87 87-179 325-416 (563)
243 2z43_A DNA repair and recombin 85.8 0.82 2.8E-05 40.0 4.7 42 70-111 107-151 (324)
244 2qor_A Guanylate kinase; phosp 85.8 0.46 1.6E-05 38.3 2.9 24 67-90 9-32 (204)
245 1vec_A ATP-dependent RNA helic 85.7 4.2 0.00014 32.4 8.8 72 269-344 70-152 (206)
246 2rb4_A ATP-dependent RNA helic 85.7 3.7 0.00013 31.9 8.2 70 101-179 34-108 (175)
247 2jgn_A DBX, DDX3, ATP-dependen 85.7 2.1 7.3E-05 33.8 6.8 71 100-179 45-120 (185)
248 2ius_A DNA translocase FTSK; n 85.4 1.1 3.6E-05 41.9 5.4 29 68-96 165-193 (512)
249 3a8t_A Adenylate isopentenyltr 85.3 0.44 1.5E-05 41.7 2.7 21 71-91 41-61 (339)
250 3tau_A Guanylate kinase, GMP k 85.3 0.5 1.7E-05 38.3 2.9 21 69-89 7-27 (208)
251 1ofh_A ATP-dependent HSL prote 85.2 2.1 7E-05 36.9 7.1 20 70-89 50-69 (310)
252 1zp6_A Hypothetical protein AT 85.1 0.39 1.3E-05 38.2 2.2 23 67-89 6-28 (191)
253 2r8r_A Sensor protein; KDPD, P 85.1 0.97 3.3E-05 37.0 4.5 27 72-98 8-34 (228)
254 3iij_A Coilin-interacting nucl 85.1 0.56 1.9E-05 36.9 3.0 23 68-90 9-31 (180)
255 4f4c_A Multidrug resistance pr 85.1 2.2 7.4E-05 45.2 8.2 43 170-212 1232-1274(1321)
256 3trf_A Shikimate kinase, SK; a 85.1 0.52 1.8E-05 37.2 2.9 22 70-91 5-26 (185)
257 3hjh_A Transcription-repair-co 85.0 1.7 5.8E-05 40.3 6.6 75 258-345 371-445 (483)
258 2oxc_A Probable ATP-dependent 85.0 2.7 9.3E-05 34.4 7.4 71 269-344 91-172 (230)
259 1xti_A Probable ATP-dependent 85.0 4.6 0.00016 36.0 9.5 72 270-344 76-158 (391)
260 1xp8_A RECA protein, recombina 85.0 0.81 2.8E-05 40.8 4.3 39 70-111 74-112 (366)
261 3lw7_A Adenylate kinase relate 84.7 0.41 1.4E-05 37.3 2.1 19 72-90 3-21 (179)
262 3bgw_A DNAB-like replicative h 84.6 0.7 2.4E-05 42.4 3.9 40 67-109 194-233 (444)
263 3exa_A TRNA delta(2)-isopenten 84.4 0.51 1.8E-05 40.8 2.7 20 72-91 5-24 (322)
264 2ehv_A Hypothetical protein PH 84.4 0.88 3E-05 37.8 4.2 25 67-91 27-51 (251)
265 2gza_A Type IV secretion syste 84.4 0.56 1.9E-05 41.8 3.1 23 67-89 172-194 (361)
266 3foz_A TRNA delta(2)-isopenten 84.3 0.53 1.8E-05 40.7 2.7 20 72-91 12-31 (316)
267 1lvg_A Guanylate kinase, GMP k 84.3 0.59 2E-05 37.6 2.9 22 69-90 3-24 (198)
268 3bor_A Human initiation factor 84.2 2.9 0.0001 34.4 7.3 73 269-344 97-179 (237)
269 2ze6_A Isopentenyl transferase 84.2 0.53 1.8E-05 39.6 2.7 18 73-90 4-21 (253)
270 1v5w_A DMC1, meiotic recombina 84.1 0.94 3.2E-05 40.0 4.4 41 71-111 123-166 (343)
271 2pt7_A CAG-ALFA; ATPase, prote 84.1 0.91 3.1E-05 39.9 4.2 22 67-88 168-189 (330)
272 2j41_A Guanylate kinase; GMP, 84.0 0.61 2.1E-05 37.5 2.9 22 68-89 4-25 (207)
273 2c9o_A RUVB-like 1; hexameric 84.0 1.6 5.3E-05 40.3 5.9 21 69-89 62-82 (456)
274 1tue_A Replication protein E1; 83.9 0.48 1.6E-05 38.2 2.1 19 71-89 59-77 (212)
275 3vkg_A Dynein heavy chain, cyt 83.9 2.7 9.3E-05 48.0 8.6 69 41-110 874-946 (3245)
276 1qhx_A CPT, protein (chloramph 83.9 0.63 2.1E-05 36.4 2.8 20 70-89 3-22 (178)
277 2r44_A Uncharacterized protein 83.8 0.58 2E-05 41.1 2.9 27 63-89 39-65 (331)
278 1iy2_A ATP-dependent metallopr 83.7 0.6 2E-05 39.8 2.9 56 31-89 35-92 (278)
279 2i4i_A ATP-dependent RNA helic 83.6 6.8 0.00023 35.2 10.1 72 99-179 274-350 (417)
280 1nlf_A Regulatory protein REPA 83.6 1.7 5.8E-05 37.0 5.7 27 66-92 26-52 (279)
281 1y63_A LMAJ004144AAA protein; 83.3 0.7 2.4E-05 36.5 2.9 22 69-90 9-30 (184)
282 3ney_A 55 kDa erythrocyte memb 83.2 0.73 2.5E-05 36.9 2.9 21 69-89 18-38 (197)
283 1ex7_A Guanylate kinase; subst 83.1 0.85 2.9E-05 36.2 3.3 17 71-87 2-18 (186)
284 1kag_A SKI, shikimate kinase I 83.0 0.77 2.6E-05 35.7 3.0 20 70-89 4-23 (173)
285 1um8_A ATP-dependent CLP prote 82.8 2.5 8.7E-05 37.7 6.8 20 70-89 72-91 (376)
286 1cr0_A DNA primase/helicase; R 82.8 1.2 4.2E-05 38.2 4.5 41 67-109 32-72 (296)
287 1u0j_A DNA replication protein 82.6 1 3.6E-05 37.9 3.7 45 43-90 74-124 (267)
288 1ly1_A Polynucleotide kinase; 82.5 0.71 2.4E-05 36.1 2.7 18 72-89 4-21 (181)
289 3tr0_A Guanylate kinase, GMP k 82.4 0.79 2.7E-05 36.8 2.9 21 69-89 6-26 (205)
290 2pl3_A Probable ATP-dependent 82.3 3 0.0001 34.2 6.6 71 269-344 96-177 (236)
291 2iut_A DNA translocase FTSK; n 82.3 1.6 5.6E-05 41.1 5.3 41 70-110 214-255 (574)
292 3kb2_A SPBC2 prophage-derived 82.3 0.72 2.5E-05 35.8 2.6 18 72-89 3-20 (173)
293 1qde_A EIF4A, translation init 82.3 2.5 8.4E-05 34.4 6.0 72 268-344 80-161 (224)
294 3t15_A Ribulose bisphosphate c 82.3 0.74 2.5E-05 39.7 2.9 19 71-89 37-55 (293)
295 4f4c_A Multidrug resistance pr 82.2 1.5 5.1E-05 46.4 5.6 44 168-211 567-610 (1321)
296 4gp7_A Metallophosphoesterase; 82.2 0.51 1.7E-05 36.9 1.6 21 69-89 8-28 (171)
297 2gxq_A Heat resistant RNA depe 81.9 5.2 0.00018 31.8 7.8 72 269-344 71-150 (207)
298 1c9k_A COBU, adenosylcobinamid 81.6 0.96 3.3E-05 35.6 3.0 45 73-124 2-46 (180)
299 2ewv_A Twitching motility prot 81.6 0.69 2.4E-05 41.4 2.5 22 68-89 134-155 (372)
300 1sky_E F1-ATPase, F1-ATP synth 81.4 8.4 0.00029 35.4 9.5 31 63-93 144-174 (473)
301 3crm_A TRNA delta(2)-isopenten 81.3 0.87 3E-05 39.6 2.9 20 72-91 7-26 (323)
302 3jvv_A Twitching mobility prot 81.2 0.75 2.6E-05 40.8 2.5 21 69-89 122-142 (356)
303 1kht_A Adenylate kinase; phosp 81.1 0.9 3.1E-05 35.9 2.8 20 70-89 3-22 (192)
304 1z6g_A Guanylate kinase; struc 81.1 1 3.4E-05 36.8 3.1 22 68-89 21-42 (218)
305 3a00_A Guanylate kinase, GMP k 81.1 0.98 3.3E-05 35.7 3.0 19 71-89 2-20 (186)
306 2yvu_A Probable adenylyl-sulfa 80.8 1.7 6E-05 34.2 4.4 22 70-91 13-34 (186)
307 3d3q_A TRNA delta(2)-isopenten 80.7 0.96 3.3E-05 39.7 3.0 20 72-91 9-28 (340)
308 3cm0_A Adenylate kinase; ATP-b 80.5 0.73 2.5E-05 36.4 2.0 21 70-90 4-24 (186)
309 4eun_A Thermoresistant glucoki 80.2 1 3.6E-05 36.1 2.9 21 69-89 28-48 (200)
310 3sqw_A ATP-dependent RNA helic 80.2 11 0.00039 35.7 10.6 85 91-181 278-367 (579)
311 3iuy_A Probable ATP-dependent 80.2 6.1 0.00021 32.1 7.8 72 269-344 93-173 (228)
312 1z6t_A APAF-1, apoptotic prote 80.0 3 0.0001 39.8 6.6 21 71-91 148-168 (591)
313 1knq_A Gluconate kinase; ALFA/ 80.0 0.94 3.2E-05 35.3 2.5 20 70-89 8-27 (175)
314 2qt1_A Nicotinamide riboside k 79.9 0.67 2.3E-05 37.4 1.7 27 63-89 14-40 (207)
315 1wrb_A DJVLGB; RNA helicase, D 79.9 19 0.00064 29.7 10.8 71 270-344 100-180 (253)
316 1q57_A DNA primase/helicase; d 79.8 1.3 4.3E-05 41.6 3.7 41 67-109 239-279 (503)
317 1zu4_A FTSY; GTPase, signal re 79.8 1.8 6.1E-05 37.7 4.4 34 72-108 107-140 (320)
318 1zuh_A Shikimate kinase; alpha 79.0 1.1 3.9E-05 34.6 2.7 20 71-90 8-27 (168)
319 1znw_A Guanylate kinase, GMP k 78.9 1.2 4.2E-05 35.9 3.0 23 66-88 16-38 (207)
320 3t61_A Gluconokinase; PSI-biol 78.9 1.1 3.8E-05 35.9 2.7 19 71-89 19-37 (202)
321 3fb4_A Adenylate kinase; psych 78.7 1.3 4.3E-05 36.0 3.0 19 72-90 2-20 (216)
322 1rj9_A FTSY, signal recognitio 78.5 2.4 8.3E-05 36.6 4.8 22 70-91 102-123 (304)
323 1s96_A Guanylate kinase, GMP k 78.4 1.3 4.4E-05 36.2 2.9 23 67-89 13-35 (219)
324 3lnc_A Guanylate kinase, GMP k 78.3 0.87 3E-05 37.5 1.9 23 67-89 24-46 (231)
325 1via_A Shikimate kinase; struc 78.3 1.3 4.5E-05 34.5 2.9 19 72-90 6-24 (175)
326 4fcw_A Chaperone protein CLPB; 78.3 1.5 5.1E-05 37.9 3.5 19 71-89 48-66 (311)
327 3nwj_A ATSK2; P loop, shikimat 78.3 1.5 5.1E-05 36.7 3.3 22 69-90 47-68 (250)
328 2v54_A DTMP kinase, thymidylat 78.2 1.2 4.2E-05 35.6 2.8 22 69-90 3-24 (204)
329 3umf_A Adenylate kinase; rossm 78.1 1.3 4.4E-05 36.2 2.8 22 70-91 29-50 (217)
330 2c95_A Adenylate kinase 1; tra 78.0 1.3 4.4E-05 35.2 2.8 22 69-90 8-29 (196)
331 3eph_A TRNA isopentenyltransfe 78.0 1.2 4.1E-05 40.0 2.8 20 72-91 4-23 (409)
332 2rhm_A Putative kinase; P-loop 78.0 1.1 3.9E-05 35.4 2.5 21 70-90 5-25 (193)
333 1gvn_B Zeta; postsegregational 78.0 1.2 4E-05 38.3 2.6 20 71-90 34-53 (287)
334 3sr0_A Adenylate kinase; phosp 77.9 1.4 4.8E-05 35.6 3.0 20 72-91 2-21 (206)
335 3uie_A Adenylyl-sulfate kinase 77.8 1.2 4.1E-05 35.7 2.6 22 69-90 24-45 (200)
336 2iyv_A Shikimate kinase, SK; t 77.8 1.5 5E-05 34.5 3.0 20 71-90 3-22 (184)
337 1zd8_A GTP:AMP phosphotransfer 77.8 1.2 4.2E-05 36.5 2.7 21 70-90 7-27 (227)
338 3b9q_A Chloroplast SRP recepto 77.7 2.3 7.8E-05 36.7 4.4 22 70-91 100-121 (302)
339 3ly5_A ATP-dependent RNA helic 77.6 9.4 0.00032 31.9 8.3 72 269-344 125-207 (262)
340 3dl0_A Adenylate kinase; phosp 77.5 1.3 4.4E-05 36.0 2.7 19 72-90 2-20 (216)
341 1wp9_A ATP-dependent RNA helic 77.4 11 0.00037 34.5 9.4 71 269-344 51-131 (494)
342 1aky_A Adenylate kinase; ATP:A 77.3 1.6 5.5E-05 35.5 3.3 21 70-90 4-24 (220)
343 2r62_A Cell division protease 77.2 0.77 2.6E-05 38.8 1.3 21 70-90 44-64 (268)
344 1nks_A Adenylate kinase; therm 77.0 1.4 4.9E-05 34.8 2.8 19 72-90 3-21 (194)
345 1tev_A UMP-CMP kinase; ploop, 76.8 1.4 4.7E-05 34.9 2.7 19 71-89 4-22 (196)
346 2bdt_A BH3686; alpha-beta prot 76.8 1.4 4.8E-05 34.8 2.7 19 72-90 4-22 (189)
347 2l82_A Designed protein OR32; 76.8 16 0.00054 25.3 9.7 73 252-324 59-133 (162)
348 2bwj_A Adenylate kinase 5; pho 76.7 1.5 5.1E-05 34.9 2.9 22 69-90 11-32 (199)
349 1e6c_A Shikimate kinase; phosp 76.5 1.6 5.4E-05 33.8 2.9 19 72-90 4-22 (173)
350 3i32_A Heat resistant RNA depe 76.1 5.1 0.00017 34.5 6.2 70 101-179 28-102 (300)
351 3ice_A Transcription terminati 76.0 2.4 8.2E-05 37.9 4.1 24 66-89 170-193 (422)
352 1zak_A Adenylate kinase; ATP:A 75.9 1.8 6.1E-05 35.3 3.2 20 71-90 6-25 (222)
353 3c8u_A Fructokinase; YP_612366 75.9 1.4 4.9E-05 35.5 2.5 20 69-88 21-40 (208)
354 3cmu_A Protein RECA, recombina 75.9 2.3 7.9E-05 46.4 4.6 41 69-112 1426-1466(2050)
355 1qf9_A UMP/CMP kinase, protein 75.8 1.4 4.9E-05 34.7 2.5 19 72-90 8-26 (194)
356 1ak2_A Adenylate kinase isoenz 75.8 1.8 6.2E-05 35.6 3.2 22 70-91 16-37 (233)
357 3tqf_A HPR(Ser) kinase; transf 75.7 1.4 4.8E-05 34.4 2.2 24 69-92 15-38 (181)
358 1xjc_A MOBB protein homolog; s 75.7 3.4 0.00012 32.1 4.5 19 72-90 6-24 (169)
359 3gk5_A Uncharacterized rhodane 75.5 2.6 8.8E-05 29.8 3.5 37 269-305 54-90 (108)
360 3tlx_A Adenylate kinase 2; str 75.5 1.8 6.2E-05 36.0 3.1 22 70-91 29-50 (243)
361 2plr_A DTMP kinase, probable t 75.4 1.7 5.8E-05 35.0 2.9 22 70-91 4-25 (213)
362 1fuu_A Yeast initiation factor 75.2 12 0.00039 33.3 8.7 71 269-344 88-168 (394)
363 3foj_A Uncharacterized protein 75.2 2.9 9.8E-05 29.0 3.7 36 269-304 55-90 (100)
364 2v9p_A Replication protein E1; 75.1 1.7 5.8E-05 37.5 2.9 23 67-89 123-145 (305)
365 1ye8_A Protein THEP1, hypothet 75.0 1.7 5.8E-05 34.1 2.7 17 72-88 2-18 (178)
366 4a74_A DNA repair and recombin 75.0 1.3 4.4E-05 36.3 2.1 24 68-91 23-46 (231)
367 2cdn_A Adenylate kinase; phosp 74.9 1.6 5.6E-05 34.8 2.7 20 71-90 21-40 (201)
368 1in4_A RUVB, holliday junction 74.9 1.7 5.7E-05 38.2 2.9 19 71-89 52-70 (334)
369 2wwf_A Thymidilate kinase, put 74.6 1.7 5.9E-05 35.0 2.7 23 69-91 9-31 (212)
370 2v3c_C SRP54, signal recogniti 74.5 2.3 7.8E-05 38.8 3.7 34 72-108 101-134 (432)
371 1pzn_A RAD51, DNA repair and r 74.5 2 6.9E-05 37.9 3.3 38 72-109 133-173 (349)
372 2jaq_A Deoxyguanosine kinase; 74.4 1.7 5.9E-05 34.7 2.7 19 72-90 2-20 (205)
373 1cke_A CK, MSSA, protein (cyti 74.3 1.7 5.8E-05 35.5 2.7 20 71-90 6-25 (227)
374 3fmo_B ATP-dependent RNA helic 74.2 3.4 0.00012 35.5 4.7 69 269-344 161-241 (300)
375 2pez_A Bifunctional 3'-phospho 74.2 1.7 5.9E-05 33.9 2.6 21 70-90 5-25 (179)
376 2pt5_A Shikimate kinase, SK; a 74.1 1.8 6.3E-05 33.3 2.7 19 72-90 2-20 (168)
377 1m7g_A Adenylylsulfate kinase; 74.1 2.2 7.7E-05 34.4 3.3 23 67-89 22-44 (211)
378 1ukz_A Uridylate kinase; trans 74.0 1.8 6.2E-05 34.6 2.7 18 72-89 17-34 (203)
379 3iwh_A Rhodanese-like domain p 73.9 2.9 9.8E-05 29.4 3.4 36 269-304 55-90 (103)
380 1jjv_A Dephospho-COA kinase; P 73.9 1.8 6.3E-05 34.7 2.7 18 73-90 5-22 (206)
381 2og2_A Putative signal recogni 73.7 3.2 0.00011 36.7 4.4 21 71-91 158-178 (359)
382 3be4_A Adenylate kinase; malar 73.7 2.1 7.2E-05 34.8 3.0 21 70-90 5-25 (217)
383 2pbr_A DTMP kinase, thymidylat 73.7 1.9 6.4E-05 34.1 2.7 18 73-90 3-20 (195)
384 2vli_A Antibiotic resistance p 73.6 1.6 5.6E-05 34.1 2.3 21 70-90 5-25 (183)
385 3eme_A Rhodanese-like domain p 73.6 2.9 9.9E-05 29.2 3.4 36 269-304 55-90 (103)
386 1gku_B Reverse gyrase, TOP-RG; 73.4 5.7 0.0002 40.9 6.8 74 269-344 98-181 (1054)
387 1nn5_A Similar to deoxythymidy 73.4 2 6.7E-05 34.7 2.8 23 69-91 8-30 (215)
388 1f2t_A RAD50 ABC-ATPase; DNA d 73.3 2.2 7.4E-05 32.4 2.8 17 72-88 25-41 (149)
389 1e4v_A Adenylate kinase; trans 73.2 1.8 6.1E-05 35.1 2.5 19 72-90 2-20 (214)
390 2vhj_A Ntpase P4, P4; non- hyd 73.1 1.7 5.7E-05 37.8 2.3 25 69-93 122-146 (331)
391 2z0h_A DTMP kinase, thymidylat 72.8 2 6.9E-05 34.0 2.7 18 73-90 3-20 (197)
392 3asz_A Uridine kinase; cytidin 72.7 1.8 6.2E-05 34.9 2.4 20 70-89 6-25 (211)
393 3lda_A DNA repair protein RAD5 72.6 2.7 9.2E-05 37.9 3.7 25 30-54 81-105 (400)
394 3tif_A Uncharacterized ABC tra 72.6 1.6 5.6E-05 36.1 2.1 18 69-86 30-47 (235)
395 3a4m_A L-seryl-tRNA(SEC) kinas 72.6 2 6.7E-05 36.2 2.7 20 71-90 5-24 (260)
396 2xb4_A Adenylate kinase; ATP-b 72.2 2.4 8E-05 34.7 3.0 19 72-90 2-20 (223)
397 2i3b_A HCR-ntpase, human cance 72.1 2.5 8.6E-05 33.5 3.0 41 171-214 103-145 (189)
398 1g8p_A Magnesium-chelatase 38 71.8 1.6 5.4E-05 38.5 1.9 20 70-89 45-64 (350)
399 2if2_A Dephospho-COA kinase; a 71.7 2 7E-05 34.3 2.5 18 72-89 3-20 (204)
400 3tqc_A Pantothenate kinase; bi 71.6 6.2 0.00021 34.3 5.6 17 73-89 95-111 (321)
401 3nwn_A Kinesin-like protein KI 71.5 2.5 8.4E-05 37.4 3.1 26 63-88 96-123 (359)
402 3pxg_A Negative regulator of g 71.2 3.1 0.00011 38.5 3.8 20 70-89 201-220 (468)
403 3bs4_A Uncharacterized protein 71.1 4.2 0.00014 34.1 4.3 52 70-125 21-72 (260)
404 4anj_A Unconventional myosin-V 71.1 4 0.00014 41.6 4.8 62 32-93 97-167 (1052)
405 1rz3_A Hypothetical protein rb 70.9 4.4 0.00015 32.3 4.3 19 71-89 23-41 (201)
406 2grj_A Dephospho-COA kinase; T 70.8 2.4 8.3E-05 33.7 2.7 19 72-90 14-32 (192)
407 1uf9_A TT1252 protein; P-loop, 70.5 2.3 7.7E-05 33.9 2.5 19 72-90 10-28 (203)
408 1g41_A Heat shock protein HSLU 70.4 2.7 9.3E-05 38.4 3.2 20 70-89 50-69 (444)
409 3kta_A Chromosome segregation 70.1 2.5 8.5E-05 33.1 2.6 17 72-88 28-44 (182)
410 1bg2_A Kinesin; motor protein, 69.9 3 0.0001 36.3 3.3 26 63-88 69-96 (325)
411 3cmu_A Protein RECA, recombina 69.8 3.8 0.00013 44.8 4.5 48 67-118 1078-1125(2050)
412 2bbw_A Adenylate kinase 4, AK4 69.8 2.5 8.5E-05 35.1 2.7 20 70-89 27-46 (246)
413 3f9v_A Minichromosome maintena 69.7 2.6 9E-05 40.3 3.1 15 72-86 329-343 (595)
414 3qf7_A RAD50; ABC-ATPase, ATPa 69.6 3.2 0.00011 37.0 3.4 17 72-88 25-41 (365)
415 1hv8_A Putative ATP-dependent 69.5 25 0.00086 30.6 9.5 72 268-344 72-153 (367)
416 2p5t_B PEZT; postsegregational 69.5 1.9 6.3E-05 36.1 1.8 20 71-90 33-52 (253)
417 3cmw_A Protein RECA, recombina 69.4 3.9 0.00014 44.0 4.5 41 68-111 32-72 (1706)
418 1nij_A Hypothetical protein YJ 69.3 3.5 0.00012 35.8 3.6 17 73-89 7-23 (318)
419 4e22_A Cytidylate kinase; P-lo 69.3 2.8 9.6E-05 35.0 2.9 21 69-89 26-46 (252)
420 1q0u_A Bstdead; DEAD protein, 69.1 4.4 0.00015 32.8 4.0 72 269-344 71-156 (219)
421 1htw_A HI0065; nucleotide-bind 69.1 2.6 9E-05 32.3 2.4 22 68-89 31-52 (158)
422 3fht_A ATP-dependent RNA helic 69.1 8.8 0.0003 34.3 6.4 69 102-179 267-340 (412)
423 2cbz_A Multidrug resistance-as 68.7 2.5 8.5E-05 35.0 2.4 20 68-87 29-48 (237)
424 1wv9_A Rhodanese homolog TT165 68.3 3.9 0.00013 27.9 3.0 35 271-305 54-88 (94)
425 1goj_A Kinesin, kinesin heavy 68.2 3.4 0.00012 36.5 3.3 25 64-88 73-99 (355)
426 1np6_A Molybdopterin-guanine d 68.0 7 0.00024 30.4 4.7 19 72-90 8-26 (174)
427 2f1r_A Molybdopterin-guanine d 67.8 1.7 5.7E-05 34.0 1.1 20 72-91 4-23 (171)
428 2pcj_A ABC transporter, lipopr 67.8 2.2 7.4E-05 35.0 1.8 18 69-86 29-46 (224)
429 3qf4_A ABC transporter, ATP-bi 67.8 4.7 0.00016 38.5 4.4 41 171-211 495-535 (587)
430 1tf7_A KAIC; homohexamer, hexa 67.8 4.8 0.00016 37.8 4.4 42 67-111 278-319 (525)
431 3dc4_A Kinesin-like protein NO 67.6 3.3 0.00011 36.4 3.0 24 64-87 87-112 (344)
432 3l0o_A Transcription terminati 67.6 4.6 0.00016 36.1 3.9 29 66-95 171-199 (427)
433 1sgw_A Putative ABC transporte 67.5 2.8 9.7E-05 34.0 2.5 20 68-87 33-52 (214)
434 1f9v_A Kinesin-like protein KA 67.5 4 0.00014 35.9 3.6 26 63-88 76-103 (347)
435 2vvg_A Kinesin-2; motor protei 67.4 3.6 0.00012 36.2 3.3 24 64-87 82-107 (350)
436 3lre_A Kinesin-like protein KI 67.4 3.6 0.00012 36.4 3.2 25 64-88 98-124 (355)
437 2h58_A Kinesin-like protein KI 67.3 3.7 0.00013 35.9 3.3 26 63-88 72-99 (330)
438 3b6u_A Kinesin-like protein KI 67.2 3.4 0.00012 36.7 3.1 26 63-88 93-120 (372)
439 1t5c_A CENP-E protein, centrom 67.1 3.5 0.00012 36.3 3.1 25 64-88 70-96 (349)
440 2y65_A Kinesin, kinesin heavy 67.0 3.7 0.00013 36.4 3.3 25 64-88 77-103 (365)
441 2zfi_A Kinesin-like protein KI 66.8 3.7 0.00013 36.4 3.3 26 63-88 81-108 (366)
442 3pey_A ATP-dependent RNA helic 66.8 66 0.0022 28.2 12.8 75 100-183 242-321 (395)
443 2db3_A ATP-dependent RNA helic 66.7 20 0.00068 32.6 8.3 67 104-179 303-374 (434)
444 3dmn_A Putative DNA helicase; 66.7 32 0.0011 26.5 8.4 64 270-348 61-124 (174)
445 3k1j_A LON protease, ATP-depen 66.6 4.3 0.00015 38.9 3.9 24 66-89 56-79 (604)
446 3t0q_A AGR253WP; kinesin, alph 66.6 4.2 0.00014 35.8 3.5 26 63-88 77-104 (349)
447 1g6h_A High-affinity branched- 66.6 2.5 8.7E-05 35.4 2.0 19 69-87 32-50 (257)
448 3gbj_A KIF13B protein; kinesin 66.5 3.6 0.00012 36.3 3.1 26 63-88 84-111 (354)
449 2nr8_A Kinesin-like protein KI 66.4 3.6 0.00012 36.3 3.1 26 63-88 95-122 (358)
450 1vht_A Dephospho-COA kinase; s 66.4 3.3 0.00011 33.5 2.7 18 72-89 6-23 (218)
451 4a14_A Kinesin, kinesin-like p 66.4 4 0.00014 35.9 3.3 24 64-87 76-101 (344)
452 3sfz_A APAF-1, apoptotic pepti 66.3 18 0.00061 37.9 8.9 20 72-91 149-168 (1249)
453 3zq6_A Putative arsenical pump 66.3 5.7 0.0002 34.6 4.4 34 73-109 17-50 (324)
454 3hix_A ALR3790 protein; rhodan 66.2 5.3 0.00018 28.0 3.4 36 269-304 51-87 (106)
455 2pze_A Cystic fibrosis transme 66.2 2.9 9.9E-05 34.4 2.3 19 69-87 33-51 (229)
456 2ghi_A Transport protein; mult 66.2 2.9 0.0001 35.1 2.4 21 68-88 44-64 (260)
457 1v8k_A Kinesin-like protein KI 66.1 3.7 0.00013 36.9 3.1 26 63-88 146-173 (410)
458 3gfo_A Cobalt import ATP-bindi 66.1 2.9 9.8E-05 35.5 2.3 19 69-87 33-51 (275)
459 1ko7_A HPR kinase/phosphatase; 66.1 9.6 0.00033 32.9 5.6 22 70-91 144-165 (314)
460 2woo_A ATPase GET3; tail-ancho 66.0 6.2 0.00021 34.5 4.5 33 73-108 22-54 (329)
461 1ji0_A ABC transporter; ATP bi 65.9 2.7 9.1E-05 34.9 2.0 19 69-87 31-49 (240)
462 3nh6_A ATP-binding cassette SU 65.9 2.2 7.7E-05 36.8 1.6 20 69-88 79-98 (306)
463 1b0u_A Histidine permease; ABC 65.9 2.7 9.2E-05 35.4 2.1 19 69-87 31-49 (262)
464 2ff7_A Alpha-hemolysin translo 65.8 3 0.0001 34.8 2.3 20 69-88 34-53 (247)
465 1x88_A Kinesin-like protein KI 65.8 3.5 0.00012 36.5 2.9 26 63-88 80-107 (359)
466 1w7j_A Myosin VA; motor protei 65.6 11 0.00039 37.1 6.6 24 70-93 156-179 (795)
467 1uj2_A Uridine-cytidine kinase 65.6 3.4 0.00012 34.4 2.7 18 72-89 24-41 (252)
468 2v6i_A RNA helicase; membrane, 65.5 11 0.00037 34.3 6.2 54 102-159 172-225 (431)
469 2dfs_A Myosin-5A; myosin-V, in 65.3 12 0.00042 38.4 7.0 24 70-93 156-179 (1080)
470 2jeo_A Uridine-cytidine kinase 65.3 3.2 0.00011 34.4 2.5 20 70-89 25-44 (245)
471 4etp_A Kinesin-like protein KA 65.1 4.2 0.00014 36.6 3.3 26 63-88 132-159 (403)
472 1odf_A YGR205W, hypothetical 3 65.1 3.5 0.00012 35.3 2.7 18 72-89 33-50 (290)
473 2wbe_C Bipolar kinesin KRP-130 65.0 3.8 0.00013 36.5 2.9 25 64-88 93-119 (373)
474 1ltq_A Polynucleotide kinase; 65.0 3.4 0.00012 35.4 2.7 18 72-89 4-21 (301)
475 2olj_A Amino acid ABC transpor 64.9 2.9 9.9E-05 35.2 2.1 19 69-87 49-67 (263)
476 4g1u_C Hemin import ATP-bindin 64.9 3.1 0.00011 35.1 2.3 19 69-87 36-54 (266)
477 1svm_A Large T antigen; AAA+ f 64.8 3.8 0.00013 36.6 2.9 21 69-89 168-188 (377)
478 2yz2_A Putative ABC transporte 64.8 2.9 0.0001 35.3 2.1 19 69-87 32-50 (266)
479 3auy_A DNA double-strand break 64.5 3.8 0.00013 36.5 2.9 18 71-88 26-43 (371)
480 3p32_A Probable GTPase RV1496/ 64.5 8.2 0.00028 34.1 5.1 23 72-94 81-103 (355)
481 4db1_A Myosin-7; S1DC, cardiac 64.4 5.8 0.0002 39.0 4.3 60 32-91 125-192 (783)
482 3eiq_A Eukaryotic initiation f 64.4 29 0.00097 30.9 8.9 73 269-344 107-189 (414)
483 1mv5_A LMRA, multidrug resista 64.4 2.9 9.9E-05 34.7 2.0 20 69-88 27-46 (243)
484 2zu0_C Probable ATP-dependent 64.3 3.7 0.00013 34.6 2.7 20 69-88 45-64 (267)
485 3ug7_A Arsenical pump-driving 64.2 6.9 0.00024 34.5 4.5 33 73-108 29-61 (349)
486 3bfn_A Kinesin-like protein KI 64.2 4 0.00014 36.5 2.9 33 56-88 75-117 (388)
487 1tf7_A KAIC; homohexamer, hexa 64.1 5.5 0.00019 37.4 4.1 24 67-90 36-59 (525)
488 3qks_A DNA double-strand break 64.1 4.4 0.00015 32.5 3.0 17 72-88 25-41 (203)
489 2q5c_A NTRC family transcripti 64.0 52 0.0018 26.0 9.5 112 271-393 5-120 (196)
490 2nq2_C Hypothetical ABC transp 64.0 3 0.0001 34.9 2.0 19 69-87 30-48 (253)
491 1gtv_A TMK, thymidylate kinase 63.8 2.1 7.3E-05 34.5 1.0 18 73-90 3-20 (214)
492 2d2e_A SUFC protein; ABC-ATPas 63.8 3.8 0.00013 34.2 2.6 20 69-88 28-47 (250)
493 1ypw_A Transitional endoplasmi 63.8 1.6 5.6E-05 43.4 0.4 56 33-89 474-530 (806)
494 1lkx_A Myosin IE heavy chain; 63.6 5.6 0.00019 38.6 4.0 63 31-93 47-117 (697)
495 3cmw_A Protein RECA, recombina 63.5 5.4 0.00018 43.0 4.1 44 71-117 1432-1475(1706)
496 3ipz_A Monothiol glutaredoxin- 63.4 29 0.00098 24.3 6.9 55 259-316 9-69 (109)
497 4eaq_A DTMP kinase, thymidylat 63.4 3.9 0.00013 33.6 2.6 22 69-90 25-46 (229)
498 2heh_A KIF2C protein; kinesin, 63.4 4.6 0.00016 36.1 3.1 27 63-89 126-154 (387)
499 2yjt_D ATP-dependent RNA helic 67.2 1.5 5.1E-05 34.1 0.0 70 101-179 30-104 (170)
500 3cob_A Kinesin heavy chain-lik 63.3 3.7 0.00013 36.4 2.5 26 63-88 71-98 (369)
No 1
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.1e-62 Score=455.31 Aligned_cols=388 Identities=79% Similarity=1.229 Sum_probs=356.3
Q ss_pred CCCcceeeccCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhh
Q 015595 17 DDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (404)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~ 96 (404)
+......+.+..++...+|+++++++.+.+++...||..|+++|.++++.+++++++++.+|||+|||++++++++..+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~ 100 (410)
T 2j0s_A 21 DMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD 100 (410)
T ss_dssp CSSSCCCCCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCC
T ss_pred cCcccccCCCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHh
Confidence 33444455566667788999999999999999999999999999999999999999999999999999999999998886
Q ss_pred cCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcc
Q 015595 97 TSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTR 174 (404)
Q Consensus 97 ~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~ 174 (404)
....+.++||++|+++|+.|+.+.+++++...++.+..+.|+.........+..+++|+|+||+++..++.+. .+..+
T Consensus 101 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~ 180 (410)
T 2j0s_A 101 IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAI 180 (410)
T ss_dssp TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred hccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhhe
Confidence 6556678999999999999999999999888889999999998887777777778999999999999998875 45668
Q ss_pred cceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCc
Q 015595 175 AIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE 254 (404)
Q Consensus 175 ~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (404)
+++|+||+|++.+.++...+..++..+++..+++++|||+++....+...++.+|..+...........+.+.+......
T Consensus 181 ~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (410)
T 2j0s_A 181 KMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE 260 (410)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST
T ss_pred eEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH
Confidence 99999999999999999999999999999999999999999998888888888888887777777778888888888887
Q ss_pred hhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCC
Q 015595 255 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 334 (404)
Q Consensus 255 ~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gi 334 (404)
..+...+..++.....+++||||++.+.++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+
T Consensus 261 ~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 340 (410)
T 2j0s_A 261 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGL 340 (410)
T ss_dssp THHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSC
T ss_pred HhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcC
Confidence 77899999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccccC
Q 015595 335 DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 404 (404)
Q Consensus 335 d~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (404)
|+|++++||++++|.+...|.||+||+||.|+.|.+++++++.+...++.++++++..++++|.++.+++
T Consensus 341 di~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (410)
T 2j0s_A 341 DVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410 (410)
T ss_dssp CCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCTTTC
T ss_pred CcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998875
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-61 Score=452.49 Aligned_cols=380 Identities=30% Similarity=0.487 Sum_probs=341.6
Q ss_pred eeeccCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCC--
Q 015595 22 VFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-- 99 (404)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~-- 99 (404)
.......+.++.+|+++++++.+.+++..+||..|+++|.++++.+++++++++++|||||||++++++++..+....
T Consensus 45 ~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~ 124 (434)
T 2db3_A 45 KVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE 124 (434)
T ss_dssp EEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC
T ss_pred EecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc
Confidence 334455667888999999999999999999999999999999999999999999999999999999999988775432
Q ss_pred ---CceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcc
Q 015595 100 ---REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTR 174 (404)
Q Consensus 100 ---~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~ 174 (404)
.++++||++|+++|+.|+.+.++++....++.+..++|+.........+..+++|+|+||+++.+++.+. .+..+
T Consensus 125 ~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 125 LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 3568999999999999999999999888888999999999887777777888999999999999998875 46778
Q ss_pred cceEEeccccccccCcHHHHHHHHhhC--CCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEec
Q 015595 175 AIKLLDESDEMLSRGFKDQIYDVYRYL--PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE 252 (404)
Q Consensus 175 ~~vIiDE~h~~~~~~~~~~~~~~~~~~--~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (404)
+++|+||+|++.+.++...+..++..+ ++..|++++|||+++.+..+...++.++..+...........+.+.+..+.
T Consensus 205 ~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~ 284 (434)
T 2db3_A 205 RFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN 284 (434)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECC
T ss_pred CeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeC
Confidence 999999999999999999999998875 567899999999999999999999998888877766666677777777766
Q ss_pred CchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccc
Q 015595 253 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWAR 332 (404)
Q Consensus 253 ~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 332 (404)
... +...+.+++.....+ +||||++++.++.+++.|...++.+..+||+++..+|.++++.|++|+.+|||||+++++
T Consensus 285 ~~~-k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~r 362 (434)
T 2db3_A 285 KYA-KRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASR 362 (434)
T ss_dssp GGG-HHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTS
T ss_pred cHH-HHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhC
Confidence 554 788888888876544 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEecc-CcHHHHHHHHHHHccccccCCcccccc
Q 015595 333 GLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKN-DDIKILRDIEQYYSTQIDEMPMNVADL 403 (404)
Q Consensus 333 Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
|+|+|++++||++++|.+..+|+||+||+||.|+.|.+++|+++ ++......+.+.++....++|.||.++
T Consensus 363 GlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 363 GLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp SCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred CCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 99999999999999999999999999999999999999999994 578889999999999999999998763
No 3
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2e-60 Score=444.73 Aligned_cols=379 Identities=65% Similarity=1.063 Sum_probs=331.6
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEE
Q 015595 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (404)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~l 105 (404)
+...+...+|+++++++.+.+.+.+.|+..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.+++
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~l 112 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQAL 112 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEE
Confidence 44455667899999999999999999999999999999999999999999999999999999999998887666677899
Q ss_pred EEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh-cCCCeEEeChHHHHHHHHcc--CCCcccceEEecc
Q 015595 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDES 182 (404)
Q Consensus 106 il~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~ 182 (404)
|++|+++|+.|+.+.+++++...+..+..+.|+........... .+++|+|+||+++.+.+... .+..++++|+||+
T Consensus 113 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEa 192 (414)
T 3eiq_A 113 VLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA 192 (414)
T ss_dssp EECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSH
T ss_pred EEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECH
Confidence 99999999999999999998888888888888887776666655 67899999999999988775 3566899999999
Q ss_pred ccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHH
Q 015595 183 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLC 262 (404)
Q Consensus 183 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 262 (404)
|++.+.++...+..++..+++..++++||||+++........++.++..+...........+.+.+........+...+.
T Consensus 193 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 272 (414)
T 3eiq_A 193 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC 272 (414)
T ss_dssp HHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHH
T ss_pred HHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHH
Confidence 99998889999999999999999999999999999999999999999888887777788888888888888888999999
Q ss_pred hhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEE
Q 015595 263 DLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLV 342 (404)
Q Consensus 263 ~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~v 342 (404)
.+++....+++||||++.+.++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++|
T Consensus 273 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 273 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccccC
Q 015595 343 INYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 404 (404)
Q Consensus 343 i~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (404)
|+++.|.|...|.||+||+||.|+.|.+++++++.+...++.++++++..+.++|.++.+||
T Consensus 353 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (414)
T 3eiq_A 353 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 414 (414)
T ss_dssp EESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC------
T ss_pred EEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999886
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.9e-59 Score=437.22 Aligned_cols=378 Identities=33% Similarity=0.521 Sum_probs=332.7
Q ss_pred ccCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCC-----
Q 015595 25 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----- 99 (404)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~----- 99 (404)
....+.+..+|+++++++.+.+++...||..|+++|.++++.+++++++++.+|||+|||++++++++..+....
T Consensus 7 ~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~ 86 (417)
T 2i4i_A 7 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEAL 86 (417)
T ss_dssp STTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHH
T ss_pred CCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchh
Confidence 344567778899999999999999999999999999999999999999999999999999999999987764322
Q ss_pred -------------CceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHH
Q 015595 100 -------------REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI 166 (404)
Q Consensus 100 -------------~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l 166 (404)
.++++||++|+++|+.|+.+.++++....++.+..++|+.........+..+++|+|+||+++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l 166 (417)
T 2i4i_A 87 RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM 166 (417)
T ss_dssp HHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHH
T ss_pred hccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHH
Confidence 2257999999999999999999999888889999999998887777777788999999999999998
Q ss_pred Hcc--CCCcccceEEeccccccccCcHHHHHHHHhhC--CC--CceEEEEeeecchHHHHHHHhccCCCeEEEecCCccc
Q 015595 167 KRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYL--PP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELT 240 (404)
Q Consensus 167 ~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~--~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (404)
... .+..++++|+||+|.+.+.++...+..+.... +. ..+++++|||+++....+...++.++..+........
T Consensus 167 ~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (417)
T 2i4i_A 167 ERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST 246 (417)
T ss_dssp HTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----C
T ss_pred HcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 875 36678999999999999988899998888743 32 5789999999999988888888888877776666566
Q ss_pred cCCceEEEEEecCchhHHHHHHhhhhcC-CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcC
Q 015595 241 LEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSG 319 (404)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 319 (404)
...+.+.+...... .+...+..+++.. .++++||||+++++++.+++.|+..++.+..+||+++..+|.++++.|++|
T Consensus 247 ~~~i~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 325 (417)
T 2i4i_A 247 SENITQKVVWVEES-DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 325 (417)
T ss_dssp CSSEEEEEEECCGG-GHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT
T ss_pred ccCceEEEEEeccH-hHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcC
Confidence 66777777666554 4788888888876 567899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcc
Q 015595 320 TTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMN 399 (404)
Q Consensus 320 ~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (404)
+.+|||||+++++|+|+|++++||++++|.|...|+||+||+||.|+.|.+++++++.+...+..+.+.++....++|.+
T Consensus 326 ~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 405 (417)
T 2i4i_A 326 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSW 405 (417)
T ss_dssp SSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHH
T ss_pred CCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccc
Q 015595 400 VADL 403 (404)
Q Consensus 400 ~~~~ 403 (404)
+.++
T Consensus 406 l~~~ 409 (417)
T 2i4i_A 406 LENM 409 (417)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.1e-58 Score=430.96 Aligned_cols=371 Identities=41% Similarity=0.701 Sum_probs=333.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEccc
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (404)
...+|+++++++.+.+++.+.||..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.+++|++|+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 45679999999999999999999999999999999999999999999999999999999999887665566689999999
Q ss_pred HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEecccccccc
Q 015595 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSR 188 (404)
Q Consensus 111 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~ 188 (404)
++|+.|+.+.++++....++.+....|+.............++|+|+||+.+.+++... .+..++++|+||+|++.+.
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~ 178 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR 178 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhh
Confidence 99999999999999888888999999988877766666778999999999999888764 4677899999999999888
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcC
Q 015595 189 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 268 (404)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 268 (404)
.+...+..+...+++..+++++|||++......+...+..+..+.... ......+.+.+...... .+...+..++...
T Consensus 179 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~k~~~l~~~~~~~ 256 (400)
T 1s2m_A 179 DFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEER-QKLHCLNTLFSKL 256 (400)
T ss_dssp HHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCGG-GHHHHHHHHHHHS
T ss_pred chHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEechh-hHHHHHHHHHhhc
Confidence 888888999998888999999999999998888888888777655433 34455566666555544 4888888888888
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP 348 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p 348 (404)
..+++||||++.+.++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p 336 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFP 336 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCC
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcccccc
Q 015595 349 NNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADL 403 (404)
Q Consensus 349 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
.|...|.||+||+||.|+.|.+++++++.+...++.+++.++..++++|.++.+.
T Consensus 337 ~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 391 (400)
T 1s2m_A 337 KTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKS 391 (400)
T ss_dssp SSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCGG
T ss_pred CCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccccccc
Confidence 9999999999999999999999999999999999999999999999999888653
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7.2e-57 Score=417.49 Aligned_cols=368 Identities=36% Similarity=0.646 Sum_probs=325.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
..|+++++++.+.++|.+.||..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.++||++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 46999999999999999999999999999999999999999999999999999999999988776666678999999999
Q ss_pred HHHHHHHHHHHHcccc-CeeEEEEEcCcchHHHHHHHhc-CCCeEEeChHHHHHHHHcc--CCCcccceEEecccccccc
Q 015595 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSR 188 (404)
Q Consensus 113 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~ 188 (404)
|+.|+.+.++++.... ++.+..+.|+.........+.. .++|+|+||+.+..++... .+..++++|+||+|++.+.
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 9999999999987665 7888888988876655555543 4799999999999988775 4577899999999998774
Q ss_pred -CcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCc-cccCCceEEEEEecCchhHHHHHHhhhh
Q 015595 189 -GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE-LTLEGIKQFFVAVEREEWKFDTLCDLYD 266 (404)
Q Consensus 189 -~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 266 (404)
.+...+..++...++..+++++|||+++........++..+..+...... .....+.+.+...... .+...+..+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGG-GHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCch-hHHHHHHHHHH
Confidence 66777888888888899999999999999888888888888877765543 3345556665555444 48888888888
Q ss_pred cCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEcc
Q 015595 267 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD 346 (404)
Q Consensus 267 ~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~ 346 (404)
....+++||||++.++++.+++.|...++.+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++
T Consensus 247 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 326 (391)
T 1xti_A 247 VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 326 (391)
T ss_dssp HSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESS
T ss_pred hcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhccccCCCCCceeEEEEeccC-cHHHHHHHHHHHccccccCCcccc
Q 015595 347 LPNNRELYIHRIGRSGRFGRKGVAINFVKND-DIKILRDIEQYYSTQIDEMPMNVA 401 (404)
Q Consensus 347 ~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
+|.|...|.||+||+||.|+.|.+++++++. +...++.+++.++..+.++|.++.
T Consensus 327 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (391)
T 1xti_A 327 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 382 (391)
T ss_dssp CCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCCC
T ss_pred CCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcccc
Confidence 9999999999999999999999999999876 667889999999999999997753
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=5.4e-59 Score=432.21 Aligned_cols=375 Identities=60% Similarity=0.996 Sum_probs=184.5
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
.+...+|+++++++.+.+++...|+..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.++||++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 96 (394)
T 1fuu_A 17 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 96 (394)
T ss_dssp CCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc
Confidence 34557799999999999999999999999999999999999999999999999999999999998887766677899999
Q ss_pred ccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEecccccc
Q 015595 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEML 186 (404)
Q Consensus 109 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~ 186 (404)
|+++|+.|+.+.+.++....++.+..+.|+.........+. +++|+|+||+.+...+.+. .+..++++|+||+|.+.
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 175 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhh
Confidence 99999999999999998888889999998887655544443 5899999999999988765 35678999999999998
Q ss_pred ccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhh
Q 015595 187 SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 266 (404)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 266 (404)
+..+...+..+...+++..+++++|||+++........++..+..+...........+.+.+........+...+..+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (394)
T 1fuu_A 176 SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYD 255 (394)
T ss_dssp HTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------------
T ss_pred CCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHh
Confidence 88889999999999999999999999999998888888888888888777666666677776666666667778888888
Q ss_pred cCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEcc
Q 015595 267 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD 346 (404)
Q Consensus 267 ~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~ 346 (404)
....+++||||+++++++.+++.|+..++.+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++
T Consensus 256 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~ 335 (394)
T 1fuu_A 256 SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYD 335 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCccccccC
Q 015595 347 LPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 404 (404)
Q Consensus 347 ~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (404)
+|.|...|.||+||+||.|+.|.+++++++++...++.++++++..++++|.++.+++
T Consensus 336 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 393 (394)
T 1fuu_A 336 LPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 393 (394)
T ss_dssp ----------------------------------------------------------
T ss_pred CCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhhc
Confidence 9999999999999999999999999999999999999999999999999999887764
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.9e-56 Score=415.48 Aligned_cols=372 Identities=38% Similarity=0.682 Sum_probs=328.2
Q ss_pred cCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcC--CcEEEEcCCCCchhhHhHHHHHhhhhcCCCcee
Q 015595 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ 103 (404)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~ 103 (404)
+.+..+..+|+++++++.+.+++.+.||..|+++|.++++.++++ +++++.+|||+|||++++++++..+.....+.+
T Consensus 18 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~ 97 (412)
T 3fht_A 18 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ 97 (412)
T ss_dssp TSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCC
T ss_pred CCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCC
Confidence 334456778999999999999999999999999999999999987 899999999999999999999988877777778
Q ss_pred EEEEcccHHHHHHHHHHHHHHcccc-CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEE
Q 015595 104 ALILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLL 179 (404)
Q Consensus 104 ~lil~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIi 179 (404)
+||++|+++|+.|+.+.++++.... +..+....++...... ....++|+|+||+++..++.+. .+..++++|+
T Consensus 98 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 98 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 9999999999999999999987654 5677777766543322 1345799999999999988653 3467899999
Q ss_pred eccccccc-cCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHH
Q 015595 180 DESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF 258 (404)
Q Consensus 180 DE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (404)
||+|.+.+ ..+...+..+...+++..+++++|||+++........++.++..+...........+.+.+........+.
T Consensus 175 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (412)
T 3fht_A 175 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKF 254 (412)
T ss_dssp ETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHH
T ss_pred eCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHH
Confidence 99999876 57778888888988889999999999999999999999988888877777777788888888888877899
Q ss_pred HHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCC
Q 015595 259 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 338 (404)
Q Consensus 259 ~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~ 338 (404)
..+..++.....+++||||++.++++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 255 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 334 (412)
T 3fht_A 255 QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQ 334 (412)
T ss_dssp HHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTT
T ss_pred HHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccC
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCC------CChhhhhhhccccCCCCCceeEEEEeccC-cHHHHHHHHHHHccccccCCccc
Q 015595 339 VSLVINYDLP------NNRELYIHRIGRSGRFGRKGVAINFVKND-DIKILRDIEQYYSTQIDEMPMNV 400 (404)
Q Consensus 339 ~~~vi~~~~p------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
+++||+++.| .+...|+||+||+||.|+.|.+++++++. +...+..+++.++..+..++.+-
T Consensus 335 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 335 VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp EEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC----
T ss_pred CCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCcc
Confidence 9999999999 46789999999999999999999999977 48899999999999999888543
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.1e-55 Score=410.27 Aligned_cols=364 Identities=41% Similarity=0.718 Sum_probs=325.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcC--CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
...+|+++++++.+.+++.+.|+..|+++|.++++.++++ +++++.+|||+|||++++++++..+.....+.++||++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 3468999999999999999999999999999999999998 89999999999999999999998887666677899999
Q ss_pred ccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEecccccc
Q 015595 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEML 186 (404)
Q Consensus 109 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~ 186 (404)
|+++|+.|+.+.+++++...++.+....++...... ..+++|+|+||+.+...+... .+..++++|+||+|++.
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhc
Confidence 999999999999999988888888777766543221 236899999999999988765 46678999999999987
Q ss_pred c-cCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhh
Q 015595 187 S-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 265 (404)
Q Consensus 187 ~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 265 (404)
+ ..+...+..+...+++..+++++|||+++........++.++..+...........+.+.+........+...+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 159 DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp HSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHH
Confidence 7 567788888889888899999999999999899988888888888777777777788888888877777889999999
Q ss_pred hcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEc
Q 015595 266 DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINY 345 (404)
Q Consensus 266 ~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~ 345 (404)
.....+++||||+++++++.+++.|+..++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 239 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~ 318 (395)
T 3pey_A 239 GLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNY 318 (395)
T ss_dssp TTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEES
T ss_pred HhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEc
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC------ChhhhhhhccccCCCCCceeEEEEeccC-cHHHHHHHHHHHc-cccccCCc
Q 015595 346 DLPN------NRELYIHRIGRSGRFGRKGVAINFVKND-DIKILRDIEQYYS-TQIDEMPM 398 (404)
Q Consensus 346 ~~p~------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~ 398 (404)
+.|. |...|+||+||+||.|+.|.+++++.+. +...+..++++++ ..+..+|.
T Consensus 319 ~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 379 (395)
T 3pey_A 319 DLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPT 379 (395)
T ss_dssp SCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCS
T ss_pred CCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCCh
Confidence 9998 9999999999999999999999999865 6677888888888 66666664
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.8e-55 Score=401.26 Aligned_cols=359 Identities=36% Similarity=0.625 Sum_probs=315.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcC-CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEccc
Q 015595 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (404)
..+|+++++++.+.+++.+.|+..|+++|.++++.++++ +++++.+|||+|||++++.+++..+... .+.+++|++|+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~ 83 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPT 83 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCC
Confidence 357999999999999999999999999999999999988 6999999999999999999888776543 34679999999
Q ss_pred HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEecccccccc
Q 015595 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSR 188 (404)
Q Consensus 111 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~ 188 (404)
++|+.|+.+.++++....+..+....|+........... .++|+|+||+.+.+.+... .+..++++|+||+|.+.+.
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~ 162 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM 162 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhh
Confidence 999999999999988777888888888887766555544 6899999999999988775 3577899999999999998
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcC
Q 015595 189 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 268 (404)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 268 (404)
.+...+..++..+++..+++++|||+++........++.++..+.... ...+.+.+...... .+...+..++. .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~l~~~l~-~ 236 (367)
T 1hv8_A 163 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNEN-ERFEALCRLLK-N 236 (367)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGG-GHHHHHHHHHC-S
T ss_pred chHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChH-HHHHHHHHHHh-c
Confidence 888899999999888999999999999998888888777655443322 22455555554443 47788888777 4
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP 348 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p 348 (404)
.+.++||||++.++++.+++.|+..++.+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 316 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLP 316 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCC
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCc
Q 015595 349 NNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPM 398 (404)
Q Consensus 349 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (404)
.|..+|.||+||+||.|++|.+++++++.+...++.+++.++..+++++.
T Consensus 317 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 366 (367)
T 1hv8_A 317 QNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLKF 366 (367)
T ss_dssp SCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC-
T ss_pred CCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceecc
Confidence 99999999999999999999999999999999999999999999988764
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.8e-53 Score=412.29 Aligned_cols=367 Identities=27% Similarity=0.463 Sum_probs=304.3
Q ss_pred cccccccccCC----CCHHHHHHHHHCCCCCCcHHHHHhhhhhh--cCCcEEEEcCCCCchhhHhHHHHHhhhhcCC---
Q 015595 29 VEAITSFDAMG----IKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS--- 99 (404)
Q Consensus 29 ~~~~~~~~~~~----l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~--- 99 (404)
.....+|+++. +++++.+++..+||..|+|+|.++++.++ .++++++.+|||+|||++++++++..+....
T Consensus 13 ~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~ 92 (579)
T 3sqw_A 13 NSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS 92 (579)
T ss_dssp SCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccc
Confidence 34444565554 99999999999999999999999999999 6789999999999999999999998875543
Q ss_pred -CceeEEEEcccHHHHHHHHHHHHHHcc----ccCeeEEEEEcCcchHHHHHHHh-cCCCeEEeChHHHHHHHHcc---C
Q 015595 100 -REVQALILSPTRELATQTEKVILAIGD----FINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK---T 170 (404)
Q Consensus 100 -~~~~~lil~p~~~L~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~l~~~---~ 170 (404)
.+.++||++|+++|+.|+.+.++++.. .....+..+.|+.........+. .+++|+|+||+++..++.+. .
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 345799999999999999999998752 23466777888877666665553 47999999999999888753 5
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCC-------CCceEEEEeeecchHHHHHHHhccCCCeEEEecCCc----c
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLP-------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE----L 239 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~ 239 (404)
+..++++|+||||++.++++...+..+...++ ...+++++|||+++.+..+...++..+..+...... .
T Consensus 173 ~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 252 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252 (579)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccc
Confidence 67789999999999999988888777766542 367999999999999999988888887766654322 2
Q ss_pred ccCCceEEEEEecCchhH----HHHHHhhhhc-CCCCeEEEEecchhhHHHHHHHHhhC---CCeEEEecCCCCHHHHHH
Q 015595 240 TLEGIKQFFVAVEREEWK----FDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGY---NFTVSSMHGDMPQKERDA 311 (404)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~----~~~l~~~l~~-~~~~k~lIf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~ 311 (404)
....+.+.+......... ...+...+.. ..+.++||||+++..++.+++.|+.. ++.+..+||+++..+|..
T Consensus 253 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 253 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 332 (579)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred cccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHH
Confidence 234455555555443222 2333333332 55679999999999999999999886 889999999999999999
Q ss_pred HHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHcc
Q 015595 312 IMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYST 391 (404)
Q Consensus 312 ~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (404)
+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++++.+.+...+..+++..+.
T Consensus 333 ~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 412 (579)
T 3sqw_A 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 412 (579)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred HHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred cccc
Q 015595 392 QIDE 395 (404)
Q Consensus 392 ~~~~ 395 (404)
.+..
T Consensus 413 ~~~~ 416 (579)
T 3sqw_A 413 VIAK 416 (579)
T ss_dssp CCCE
T ss_pred Cccc
Confidence 6543
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.1e-55 Score=419.42 Aligned_cols=367 Identities=39% Similarity=0.692 Sum_probs=173.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcC--CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
+..+|.++++++.+.+++..+||..|+++|.++++.++.+ +++++++|||||||++++++++..+.....++++||++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 169 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEEC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEe
Confidence 4568999999999999999999999999999999999987 89999999999999999999999887777777899999
Q ss_pred ccHHHHHHHHHHHHHHcccc-CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEecccc
Q 015595 109 PTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDESDE 184 (404)
Q Consensus 109 p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE~h~ 184 (404)
|+++|+.|+.+.++++.... ++.+....++...... .....+|+|+||+++.+++.+. .+..++++|+||+|.
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 99999999999999887653 5666666665543222 1235789999999999998653 347889999999999
Q ss_pred ccc-cCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHh
Q 015595 185 MLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 263 (404)
Q Consensus 185 ~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 263 (404)
+.+ ..+...+..+...++...|++++|||+++....+...++.++..+...........+.+.+..+.....+...+..
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 326 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 326 (479)
T ss_dssp HHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------
T ss_pred HhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHH
Confidence 876 5677788888888888999999999999999999988998888888777766777777777777776678888888
Q ss_pred hhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEE
Q 015595 264 LYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVI 343 (404)
Q Consensus 264 ~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi 343 (404)
++.....+++||||+++..++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 327 ~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI 406 (479)
T 3fmp_B 327 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI 406 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEE
Confidence 88887888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCC------ChhhhhhhccccCCCCCceeEEEEeccCc-HHHHHHHHHHHccccccCCccc
Q 015595 344 NYDLPN------NRELYIHRIGRSGRFGRKGVAINFVKNDD-IKILRDIEQYYSTQIDEMPMNV 400 (404)
Q Consensus 344 ~~~~p~------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
++++|. +...|+||+||+||.|+.|.+++++++.+ ...++.++++++..+..++.+-
T Consensus 407 ~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 470 (479)
T 3fmp_B 407 NFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 470 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred EecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCcc
Confidence 999994 66899999999999999999999998764 8888999999999888887553
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.7e-52 Score=405.46 Aligned_cols=356 Identities=27% Similarity=0.477 Sum_probs=297.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhhhhh--cCCcEEEEcCCCCchhhHhHHHHHhhhhcCC----CceeEEEEcccHHH
Q 015595 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQALILSPTREL 113 (404)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~----~~~~~lil~p~~~L 113 (404)
+++++.+++...||..|+++|.++++.++ .++++++++|||+|||++++++++..+.... .+.++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 6789999999999999999999998876543 23579999999999
Q ss_pred HHHHHHHHHHHcc----ccCeeEEEEEcCcchHHHHHHH-hcCCCeEEeChHHHHHHHHcc---CCCcccceEEeccccc
Q 015595 114 ATQTEKVILAIGD----FINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDESDEM 185 (404)
Q Consensus 114 ~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE~h~~ 185 (404)
+.|+.+.++++.. .....+..+.|+.........+ ..+++|+|+||+++..++.+. .+..++++|+||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 9999999998643 2245677778887766665555 457999999999999888753 4677899999999999
Q ss_pred cccCcHHHHHHHHhhC-------CCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCc----cccCCceEEEEEecCc
Q 015595 186 LSRGFKDQIYDVYRYL-------PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE----LTLEGIKQFFVAVERE 254 (404)
Q Consensus 186 ~~~~~~~~~~~~~~~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 254 (404)
.+.++...+..+...+ +...|++++|||+++.+..+...++..+..+...... .....+.+.+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 9988888777776554 2367899999999999899988888887766654322 2234455555555443
Q ss_pred hhH----HHHHHhhhhc-CCCCeEEEEecchhhHHHHHHHHhhC---CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 015595 255 EWK----FDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGY---NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT 326 (404)
Q Consensus 255 ~~~----~~~l~~~l~~-~~~~k~lIf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 326 (404)
..+ ...+...+.. ..+.++||||+++..++.+++.|+.. ++.+..+||+++..+|..+++.|++|+.+||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 322 2223333332 56779999999999999999999886 889999999999999999999999999999999
Q ss_pred cCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHcccccc
Q 015595 327 TDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDE 395 (404)
Q Consensus 327 t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (404)
|+++++|+|+|++++||++++|.|...|+||+||+||.|+.|.+++++.+.+...++.+++..+..+..
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred cchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999887765543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-51 Score=375.18 Aligned_cols=334 Identities=30% Similarity=0.529 Sum_probs=285.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHH
Q 015595 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (404)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~ 119 (404)
+++.+.++++++|+..|+++|.++++.+++++++++.+|||+|||++++++++.. +.+++|++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999998888763 3469999999999999999
Q ss_pred HHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHH
Q 015595 120 VILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDV 197 (404)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 197 (404)
.++++....+..+..+.|+.........+. .++|+|+||+.+.+.+... .+..++++|+||+|.+.+..+...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999998888888988998887766555544 4899999999999988765 3567899999999999999889999999
Q ss_pred HhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEe
Q 015595 198 YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFC 277 (404)
Q Consensus 198 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~ 277 (404)
+...+...+++++|||+++........++.++..+... .....+.+.+....... ......+....++++||||
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lvf~ 227 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW---RSKVQALRENKDKGVIVFV 227 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS---HHHHHHHHTCCCSSEEEEC
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH---HHHHHHHHhCCCCcEEEEE
Confidence 99998899999999999999888888888776655322 23344555555544432 1223555666788999999
Q ss_pred cchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhh
Q 015595 278 NTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR 357 (404)
Q Consensus 278 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~ 357 (404)
++.++++.+++.|+ .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.|...|.||
T Consensus 228 ~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~ 303 (337)
T 2z0m_A 228 RTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHR 303 (337)
T ss_dssp SCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHH
T ss_pred cCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHh
Confidence 99999999999887 47899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCceeEEEEeccCcHHHHHHHHHHHcc
Q 015595 358 IGRSGRFGRKGVAINFVKNDDIKILRDIEQYYST 391 (404)
Q Consensus 358 ~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (404)
+||+||.|+.|.+++++. .+...++.+++.++.
T Consensus 304 ~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 304 IGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred cCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 999999999999999999 888888888777653
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.8e-54 Score=408.49 Aligned_cols=366 Identities=36% Similarity=0.625 Sum_probs=270.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcC--CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
+...|...++++.+.+.+.+.|+..|+++|.++++.++++ +++++.+|||+|||++++++++..+..+..+.++||++
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~ 196 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLA 196 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEEC
T ss_pred ccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 3444666778889999999999999999999999999998 89999999999999999999999887777677899999
Q ss_pred ccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEecccccc
Q 015595 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEML 186 (404)
Q Consensus 109 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~ 186 (404)
|+++|+.|+.+.+++++...+..+....++..... ...+++|+|+||+.+...+... .+..++++|+||+|.+.
T Consensus 197 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~ 272 (508)
T 3fho_A 197 PSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNML 272 (508)
T ss_dssp SCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHT
T ss_pred CcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhc
Confidence 99999999999999988776666655544433211 2236899999999999888765 46778999999999987
Q ss_pred c-cCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhh
Q 015595 187 S-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 265 (404)
Q Consensus 187 ~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 265 (404)
+ ..+...+..+...+++..+++++|||+++........+..++..+...........+.+.+........+...+..++
T Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 273 DQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELY 352 (508)
T ss_dssp TC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHH
Confidence 7 567888889999998899999999999998889888888888887777777777777777777777777888899999
Q ss_pred hcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEc
Q 015595 266 DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINY 345 (404)
Q Consensus 266 ~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~ 345 (404)
.....+++||||+++++++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 353 ~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~ 432 (508)
T 3fho_A 353 GLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNY 432 (508)
T ss_dssp C---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC-
T ss_pred HhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEE
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC------CChhhhhhhccccCCCCCceeEEEEecc-CcHHHHHHHHHHHccccccCCccc
Q 015595 346 DLP------NNRELYIHRIGRSGRFGRKGVAINFVKN-DDIKILRDIEQYYSTQIDEMPMNV 400 (404)
Q Consensus 346 ~~p------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
+.| .|...|.||+||+||.|+.|.+++++.+ ++...+..++++++..+.++|.+-
T Consensus 433 ~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~ 494 (508)
T 3fho_A 433 DMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDD 494 (508)
T ss_dssp ---CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC------
T ss_pred CCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCcc
Confidence 999 8899999999999999999999999984 577888999999999999988653
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.2e-50 Score=387.16 Aligned_cols=340 Identities=15% Similarity=0.230 Sum_probs=272.5
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccH
Q 015595 33 TSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (404)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (404)
..+.++++++.+.+.|++ +||..|+|+|.++++.+++++++++.+|||+|||++|+++++.. ..++||++|++
T Consensus 21 w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~ 94 (591)
T 2v1x_A 21 WNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLI 94 (591)
T ss_dssp GCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCH
T ss_pred cccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHH
Confidence 334568899999999998 79999999999999999999999999999999999999888752 24799999999
Q ss_pred HHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHH---H---hcCCCeEEeChHHHH------HHHHc-cCCCcccceE
Q 015595 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---L---EHGVHVVSGTPGRVC------DMIKR-KTLRTRAIKL 178 (404)
Q Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~iiv~T~~~l~------~~l~~-~~~~~~~~vI 178 (404)
+|+.|+.+.+.++ ++.+..+.++......... + ....+|+|+||+++. +.+.. ..+..++++|
T Consensus 95 ~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iV 170 (591)
T 2v1x_A 95 SLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIA 170 (591)
T ss_dssp HHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEE
Confidence 9999999999886 4777788887765443222 2 356899999999774 22322 2356789999
Q ss_pred EeccccccccC--cHHHHH---HHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecC
Q 015595 179 LDESDEMLSRG--FKDQIY---DVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER 253 (404)
Q Consensus 179 iDE~h~~~~~~--~~~~~~---~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (404)
|||||.+.+++ |...+. .+...+ +..+++++|||+++.....+..++..+....... ....+++.........
T Consensus 171 iDEAH~is~~g~dfr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~ 248 (591)
T 2v1x_A 171 VDEVHCCSQWGHDFRPDYKALGILKRQF-PNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPS 248 (591)
T ss_dssp EETGGGGSTTCTTCCGGGGGGGHHHHHC-TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCS
T ss_pred EECcccccccccccHHHHHHHHHHHHhC-CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCC
Confidence 99999988765 433332 333333 4788999999999988777777666543333322 2333444333332222
Q ss_pred -chhHHHHHHhhhhc-CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Q 015595 254 -EEWKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWA 331 (404)
Q Consensus 254 -~~~~~~~l~~~l~~-~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 331 (404)
...+...+..++.. ..++++||||++++.++.+++.|...++.+..+||+++..+|..+++.|.+|+.+|||||++++
T Consensus 249 ~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~ 328 (591)
T 2v1x_A 249 NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFG 328 (591)
T ss_dssp SHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSC
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 23356667777754 3678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHH
Q 015595 332 RGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRD 384 (404)
Q Consensus 332 ~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~ 384 (404)
+|+|+|++++||++++|.|...|+|++||+||.|++|.|++++.+.|...+..
T Consensus 329 ~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~ 381 (591)
T 2v1x_A 329 MGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISS 381 (591)
T ss_dssp TTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHH
T ss_pred cCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887665443
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=8.4e-49 Score=372.74 Aligned_cols=337 Identities=17% Similarity=0.318 Sum_probs=270.8
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccH
Q 015595 33 TSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (404)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (404)
..|+++++++.+.+.|++ +|+..|+++|.++++.+++++++++.+|||+|||++++++++.. ..++||++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChH
Confidence 468999999999999998 89999999999999999999999999999999999999887743 23699999999
Q ss_pred HHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHH---H-HhcCCCeEEeChHHHHHH--HHccCCCcccceEEeccccc
Q 015595 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---K-LEHGVHVVSGTPGRVCDM--IKRKTLRTRAIKLLDESDEM 185 (404)
Q Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~iiv~T~~~l~~~--l~~~~~~~~~~vIiDE~h~~ 185 (404)
+|+.|+.+.++++ ++.+..+.++........ . .....+|+++||+++... ........++++||||+|.+
T Consensus 76 aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 76 SLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp HHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred HHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 9999999999875 467777777765443321 2 234689999999998521 11122367789999999999
Q ss_pred cccC--cHHH---HHHHHhhCCCCceEEEEeeecchHHHHHHHhcc--CCCeEEEecCCccccCCceEEEEEecCchhHH
Q 015595 186 LSRG--FKDQ---IYDVYRYLPPDLQVVLISATLPHEILEMTTKFM--TDPVKILVKRDELTLEGIKQFFVAVEREEWKF 258 (404)
Q Consensus 186 ~~~~--~~~~---~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (404)
.+++ +... +..+...++ ..+++++|||+++.....+...+ .++..+. . ....+++... .... ..+.
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~--~~~r~~l~~~--v~~~-~~~~ 224 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQI-S--SFDRPNIRYM--LMEK-FKPL 224 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-C--CCCCTTEEEE--EEEC-SSHH
T ss_pred CcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-C--CCCCCceEEE--EEeC-CCHH
Confidence 8765 4333 333444554 67899999999987666544433 2333222 2 2223333322 2222 3467
Q ss_pred HHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCC
Q 015595 259 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 338 (404)
Q Consensus 259 ~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~ 338 (404)
..+..++....++++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 225 ~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~ 304 (523)
T 1oyw_A 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPN 304 (523)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccC
Confidence 77888888778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHH
Q 015595 339 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 386 (404)
Q Consensus 339 ~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 386 (404)
+++||+++.|.|...|.|++||+||.|++|.+++++++.|....+.+.
T Consensus 305 v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred ccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988776555443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.2e-49 Score=367.53 Aligned_cols=332 Identities=20% Similarity=0.284 Sum_probs=263.2
Q ss_pred HHHHHHH-CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHH
Q 015595 44 LLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (404)
Q Consensus 44 ~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~ 122 (404)
+.+.+++ .++ +|+++|.++++.+++++++++.+|||+|||+++++++..... .+.+++|++|+++|+.|+.+.++
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHHHHHHHH
Confidence 4455554 466 899999999999999999999999999999988888777663 34579999999999999999999
Q ss_pred HHccccCeeEEEEEcCcch---HHHHHHHhcC-CCeEEeChHHHHHHHHccCCCcccceEEeccccccc-----------
Q 015595 123 AIGDFINIQAHACVGGKSV---GEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLS----------- 187 (404)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~----------- 187 (404)
+++. .++.+..++|+... ......+..+ ++|+|+||+++.+++.......++++|+||+|++..
T Consensus 86 ~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 86 KLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp HHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred HHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhh
Confidence 9887 78899999999877 4445555555 999999999999888776777899999999997653
Q ss_pred cCcHHH-HHHHHhhCC-----------CCceEEEEeee-cchHHH-HHHHhccCCCeEEEecCCccccCCceEEEEEecC
Q 015595 188 RGFKDQ-IYDVYRYLP-----------PDLQVVLISAT-LPHEIL-EMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER 253 (404)
Q Consensus 188 ~~~~~~-~~~~~~~~~-----------~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (404)
.++... +..++..++ ...|++++||| ++.... .+...... +...........+.+.+...
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~-- 238 (414)
T 3oiy_A 165 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS-- 238 (414)
T ss_dssp TTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS--
T ss_pred cCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc--
Confidence 344445 666666654 78899999999 454333 22222221 11222233344555555443
Q ss_pred chhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEE-EecCCCCHHHHHHHHHHHhcCCCcEEEE----cC
Q 015595 254 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVS-SMHGDMPQKERDAIMGEFRSGTTRVLIT----TD 328 (404)
Q Consensus 254 ~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vlv~----t~ 328 (404)
.+...+..+++. .++++||||+++..++.+++.|+..++.+. .+||. +|+ ++.|++|+.+|||| |+
T Consensus 239 --~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~ 309 (414)
T 3oiy_A 239 --RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYG 309 (414)
T ss_dssp --CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTC
T ss_pred --CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCc
Confidence 255566666666 448999999999999999999999999998 88884 333 99999999999999 99
Q ss_pred ccccCCCCCC-CCEEEEccCC--CChhhhhhhccccCCCC----CceeEEEEeccCcHHHHHHHHHHHc--cccccCC
Q 015595 329 VWARGLDVQQ-VSLVINYDLP--NNRELYIHRIGRSGRFG----RKGVAINFVKNDDIKILRDIEQYYS--TQIDEMP 397 (404)
Q Consensus 329 ~~~~Gid~p~-~~~vi~~~~p--~s~~~~~Q~~GR~~R~g----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 397 (404)
++++|+|+|+ +++||+++.| .|...|+||+||+||.| +.|.+++++ ++...+..+++.++ ..++..+
T Consensus 310 ~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~~~~~ 385 (414)
T 3oiy_A 310 KLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIE 385 (414)
T ss_dssp CCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEE
T ss_pred hhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccccccc
Confidence 9999999999 9999999999 99999999999999987 479999998 67888888888888 5544433
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.7e-46 Score=369.75 Aligned_cols=349 Identities=16% Similarity=0.228 Sum_probs=270.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhh-hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
+|+++++++++.+.+++.||..|+++|.++++. +.+++++++++|||||||+++.++++..+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 589999999999999999999999999999998 88899999999999999999999988776533 357999999999
Q ss_pred HHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCc
Q 015595 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGF 190 (404)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~ 190 (404)
|+.|+.+.++++. ..++.+..++|+...... ....++|+|+||+++..++.+. .+..++++|+||+|.+.+...
T Consensus 80 La~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 80 LAEEKFQEFQDWE-KIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GHHHHHHHTGGGG-GGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHH-hcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 9999999996544 347888888887654332 1236899999999999888764 367889999999999988777
Q ss_pred HHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEE-----EecC-----chhHHHH
Q 015595 191 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFV-----AVER-----EEWKFDT 260 (404)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~ 260 (404)
...+..++..++++.++|+||||+++. ..+. .+++.+. +... ..+..+...+. .... ...+...
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~-~~l~~~~-~~~~---~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGNP-EELA-EWLNAEL-IVSD---WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEEL 229 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSCH-HHHH-HHTTEEE-EECC---CCSSEEEEEEEETTEEEETTSCEEECSSTTHH
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHH-HHhCCcc-cCCC---CCCCcceEEEEeCCeeeccccchhhhhHHHHH
Confidence 888888877776689999999999763 3333 3333211 1111 11111111111 0111 2234455
Q ss_pred HHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCC---------------------------------CeEEEecCCCCHH
Q 015595 261 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN---------------------------------FTVSSMHGDMPQK 307 (404)
Q Consensus 261 l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~ 307 (404)
+.+.+. .++++||||++++.++.++..|.+.. ..+..+||+++..
T Consensus 230 ~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~ 307 (720)
T 2zj8_A 230 VYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRD 307 (720)
T ss_dssp HHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred HHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHH
Confidence 555554 36899999999999999999887531 2389999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE----cc----CCCChhhhhhhccccCCCC--CceeEEEEeccC
Q 015595 308 ERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YD----LPNNRELYIHRIGRSGRFG--RKGVAINFVKND 377 (404)
Q Consensus 308 ~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~----~~----~p~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~ 377 (404)
+|..+++.|++|..+|||||+++++|+|+|++++||. |+ .|.|..+|.||+||+||.| ..|.|++++++.
T Consensus 308 ~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 387 (720)
T 2zj8_A 308 ERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD 387 (720)
T ss_dssp HHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSS
T ss_pred HHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCc
Confidence 9999999999999999999999999999999999998 55 5899999999999999998 469999999988
Q ss_pred cHHHHHHHHHHHccccccCCc
Q 015595 378 DIKILRDIEQYYSTQIDEMPM 398 (404)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~ 398 (404)
+.. ..+++++....+.+..
T Consensus 388 ~~~--~~~~~~~~~~~~~i~s 406 (720)
T 2zj8_A 388 DPR--EVMNHYIFGKPEKLFS 406 (720)
T ss_dssp CHH--HHHHHHTTSCCCCCCC
T ss_pred cHH--HHHHHHhcCCCCCcEe
Confidence 732 2334555544444443
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.1e-45 Score=364.67 Aligned_cols=334 Identities=16% Similarity=0.221 Sum_probs=259.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhh-hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
+..+|+++++++++.+.+...||..|+++|.++++. +.+++++++++|||||||+++.++++..+... +.+++|++|
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P 83 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTP 83 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECS
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 345799999999999999999999999999999999 78899999999999999999999998776533 357999999
Q ss_pred cHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccC--CCcccceEEeccccccc
Q 015595 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLDESDEMLS 187 (404)
Q Consensus 110 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~~vIiDE~h~~~~ 187 (404)
+++|+.|+.+.++.+. ..++.+...+|+....... ...++|+|+||+++..++.+.. +..++++|+||+|.+.+
T Consensus 84 ~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~ 159 (715)
T 2va8_A 84 LRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND 159 (715)
T ss_dssp CHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGC
T ss_pred cHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCC
Confidence 9999999999996443 4578888888876543321 2368999999999999887652 67889999999999887
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEE------------EEe----
Q 015595 188 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFF------------VAV---- 251 (404)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~---- 251 (404)
..+...+..+...++ +.++|+||||+++. ..+.. +++.+. +..... +..+...+ ...
T Consensus 160 ~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~r---~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (715)
T 2va8_A 160 PERGPVVESVTIRAK-RRNLLALSATISNY-KQIAK-WLGAEP-VATNWR---PVPLIEGVIYPERKKKEYNVIFKDNTT 232 (715)
T ss_dssp TTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHH-HHTCEE-EECCCC---SSCEEEEEEEECSSTTEEEEEETTSCE
T ss_pred cccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHH-HhCCCc-cCCCCC---CCCceEEEEecCCcccceeeecCcchh
Confidence 777777777776665 78999999999753 33333 333211 111111 11111111 111
Q ss_pred ---cCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCC----------------------------------
Q 015595 252 ---EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN---------------------------------- 294 (404)
Q Consensus 252 ---~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~---------------------------------- 294 (404)
.........+.+.+. .++++||||+++++++.+++.|.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 233 KKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp EEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 112334555555554 46899999999999999999997642
Q ss_pred --CeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE----cc-------CCCChhhhhhhcccc
Q 015595 295 --FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YD-------LPNNRELYIHRIGRS 361 (404)
Q Consensus 295 --~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~----~~-------~p~s~~~~~Q~~GR~ 361 (404)
..+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||. |+ .|.|..+|.||+||+
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 24889999999999999999999999999999999999999999999998 88 789999999999999
Q ss_pred CCCCC--ceeEEEEeccCcH
Q 015595 362 GRFGR--KGVAINFVKNDDI 379 (404)
Q Consensus 362 ~R~g~--~~~~~~~~~~~~~ 379 (404)
||.|. .|.|++++++.+.
T Consensus 391 GR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp CCTTTCSCEEEEEECSCGGG
T ss_pred CCCCCCCCceEEEEeCCchH
Confidence 99984 6999999987663
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1e-46 Score=374.06 Aligned_cols=352 Identities=20% Similarity=0.287 Sum_probs=230.7
Q ss_pred HHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCC--ceeEEEEcccHHHHHHHHHHHH
Q 015595 45 LRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVIL 122 (404)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~L~~q~~~~~~ 122 (404)
.+++..+|+..|+++|.++++.+++++++++++|||+|||+++++++...+..... +.++||++|+++|+.|+.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999887765432 2579999999999999999999
Q ss_pred HHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEeccccccccCc-HHHHHHHH
Q 015595 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDESDEMLSRGF-KDQIYDVY 198 (404)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE~h~~~~~~~-~~~~~~~~ 198 (404)
++....++.+..++|+.........+..+++|+|+||+.+.+.+... .+..++++||||||++.+... ...+...+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l 162 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 162 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHH
Confidence 99877789999999988665555555567999999999999998875 456789999999999876542 22222222
Q ss_pred hh-----CCCCceEEEEeeecc-------hHHHHHHHhc----------------------cCCCeEEEecCCcccc---
Q 015595 199 RY-----LPPDLQVVLISATLP-------HEILEMTTKF----------------------MTDPVKILVKRDELTL--- 241 (404)
Q Consensus 199 ~~-----~~~~~~~i~~SAT~~-------~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~--- 241 (404)
.. .++.+++++||||+. .+....+... ...|............
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~f 242 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 242 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHH
T ss_pred HHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChH
Confidence 22 246789999999996 1211111111 1112111100000000
Q ss_pred --------------------------------------------------------------------------------
Q 015595 242 -------------------------------------------------------------------------------- 241 (404)
Q Consensus 242 -------------------------------------------------------------------------------- 241 (404)
T Consensus 243 s~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 322 (696)
T 2ykg_A 243 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 322 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHH
Confidence
Q ss_pred ----------------------------CCceEEEE---------------EecCchhHHHHHHhhhhcC----CCCeEE
Q 015595 242 ----------------------------EGIKQFFV---------------AVEREEWKFDTLCDLYDTL----TITQAV 274 (404)
Q Consensus 242 ----------------------------~~~~~~~~---------------~~~~~~~~~~~l~~~l~~~----~~~k~l 274 (404)
..+.+.+. .......+...+..++... .++++|
T Consensus 323 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~I 402 (696)
T 2ykg_A 323 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 402 (696)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred HhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEE
Confidence 00000000 0001234666677777654 667999
Q ss_pred EEecchhhHHHHHHHHhhCC----CeEEEe--------cCCCCHHHHHHHHHHHhc-CCCcEEEEcCccccCCCCCCCCE
Q 015595 275 IFCNTKRKVDWLTEKMRGYN----FTVSSM--------HGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQVSL 341 (404)
Q Consensus 275 If~~~~~~~~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-~~~~vlv~t~~~~~Gid~p~~~~ 341 (404)
|||+++..++.+++.|+..+ +.+..+ |++++..+|.++++.|++ |+.+|||||+++++|+|+|++++
T Consensus 403 IF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~ 482 (696)
T 2ykg_A 403 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 482 (696)
T ss_dssp EECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSE
T ss_pred EEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCE
Confidence 99999999999999999987 788877 559999999999999998 99999999999999999999999
Q ss_pred EEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHH----HHHHccccccCCc
Q 015595 342 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI----EQYYSTQIDEMPM 398 (404)
Q Consensus 342 vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 398 (404)
||++++|.|...|+||+|| ||. +.|.++++++..+......+ ++.++....+++.
T Consensus 483 VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 541 (696)
T 2ykg_A 483 VILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQT 541 (696)
T ss_dssp EEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999 998 78999999998887666665 5566666655554
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=7.3e-46 Score=366.65 Aligned_cols=331 Identities=16% Similarity=0.236 Sum_probs=256.4
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccH
Q 015595 34 SFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (404)
Q Consensus 34 ~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (404)
+|++++ +++.+.+.+++.||..|+++|.++++.+.+++++++++|||||||+++.++++..+..+ .+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG---GKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT---CCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CcEEEEeCcH
Confidence 588888 99999999999999999999999999999999999999999999999999998877643 4699999999
Q ss_pred HHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccC--CCcccceEEeccccccccC
Q 015595 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLDESDEMLSRG 189 (404)
Q Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~~vIiDE~h~~~~~~ 189 (404)
+|+.|+.+.++++. ..++.+..++|+...... ....++|+|+||+++..++.+.. +..++++|+||+|.+.+..
T Consensus 79 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 79 ALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 99999999996443 447888888887654332 12368999999999999887752 6788999999999988776
Q ss_pred cHHHHHHHHhhC---CCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEE------EecC------c
Q 015595 190 FKDQIYDVYRYL---PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFV------AVER------E 254 (404)
Q Consensus 190 ~~~~~~~~~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~------~ 254 (404)
....+..++..+ +++.|+|+||||+++ ...+. .+++.+. +..... +..+...+. .... .
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~-~~l~~~~-~~~~~r---~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIA-EWLDADY-YVSDWR---PVPLVEGVLCEGTLELFDGAFSTSRR 228 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTTCEE-EECCCC---SSCEEEEEECSSEEEEEETTEEEEEE
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHH-HHhCCCc-ccCCCC---CccceEEEeeCCeeeccCcchhhhhh
Confidence 666555554433 568999999999986 23333 3444221 111111 111111110 1111 0
Q ss_pred hhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhC------------------------------CCeEEEecCCC
Q 015595 255 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY------------------------------NFTVSSMHGDM 304 (404)
Q Consensus 255 ~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~------------------------------~~~~~~~~~~~ 304 (404)
..+...+.+.+. .++++||||+++++++.+++.|.+. +..+..+||++
T Consensus 229 ~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l 306 (702)
T 2p6r_A 229 VKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGL 306 (702)
T ss_dssp CCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTS
T ss_pred hhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCC
Confidence 114555555554 4689999999999999999888652 12477899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE----cc---CCCChhhhhhhccccCCCC--CceeEEEEec
Q 015595 305 PQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YD---LPNNRELYIHRIGRSGRFG--RKGVAINFVK 375 (404)
Q Consensus 305 ~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~----~~---~p~s~~~~~Q~~GR~~R~g--~~~~~~~~~~ 375 (404)
+..+|..+++.|++|..+|||||+++++|+|+|++++||. |+ .|.|..+|.||+||+||.| ..|.|+++++
T Consensus 307 ~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 386 (702)
T 2p6r_A 307 LNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVG 386 (702)
T ss_dssp CHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECC
T ss_pred CHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEec
Confidence 9999999999999999999999999999999999999998 54 6899999999999999998 4699999999
Q ss_pred cCcH
Q 015595 376 NDDI 379 (404)
Q Consensus 376 ~~~~ 379 (404)
+.+.
T Consensus 387 ~~~~ 390 (702)
T 2p6r_A 387 KRDR 390 (702)
T ss_dssp GGGH
T ss_pred CccH
Confidence 8773
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2e-45 Score=356.17 Aligned_cols=329 Identities=17% Similarity=0.207 Sum_probs=199.9
Q ss_pred CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCC--ceeEEEEcccHHHHHHHHHHHHHHccccC
Q 015595 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFIN 129 (404)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 129 (404)
+..+|+++|.++++.+++++++++.+|||+|||+++++++...+..... +.++||++|+++|+.|+.+.++++....+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3458999999999999999999999999999999999999888766432 56799999999999999999999988778
Q ss_pred eeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEeccccccccCcHHHH-HHHHhh----C
Q 015595 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDESDEMLSRGFKDQI-YDVYRY----L 201 (404)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE~h~~~~~~~~~~~-~~~~~~----~ 201 (404)
+.+..++|+......+.....+++|+|+||+++.+.+... .+..++++|+||+|++.+......+ ...+.. .
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhccc
Confidence 9999999988766666666667999999999999998874 4567899999999999876533332 222221 1
Q ss_pred CCCceEEEEeeecch-----------HHHHHHHhc------------------cCCCeEEEecCCccccCC---------
Q 015595 202 PPDLQVVLISATLPH-----------EILEMTTKF------------------MTDPVKILVKRDELTLEG--------- 243 (404)
Q Consensus 202 ~~~~~~i~~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~--------- 243 (404)
.+.+++++||||++. .+..+...+ ...+..............
T Consensus 164 ~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (556)
T 4a2p_A 164 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 243 (556)
T ss_dssp --CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHH
Confidence 356899999999943 111111111 111111111000000000
Q ss_pred ------------ceEEEE-------------E------------------------------------------------
Q 015595 244 ------------IKQFFV-------------A------------------------------------------------ 250 (404)
Q Consensus 244 ------------~~~~~~-------------~------------------------------------------------ 250 (404)
...... +
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (556)
T 4a2p_A 244 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 323 (556)
T ss_dssp HHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 000000 0
Q ss_pred -------------------------------------------ecCchhHHHHHHhhhhc----CCCCeEEEEecchhhH
Q 015595 251 -------------------------------------------VEREEWKFDTLCDLYDT----LTITQAVIFCNTKRKV 283 (404)
Q Consensus 251 -------------------------------------------~~~~~~~~~~l~~~l~~----~~~~k~lIf~~~~~~~ 283 (404)
......|...+.+++.. ..+.++||||+++..+
T Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~ 403 (556)
T 4a2p_A 324 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 403 (556)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHH
Confidence 00012245555555543 4678999999999999
Q ss_pred HHHHHHHhhC------------CCeEEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCccccCCCCCCCCEEEEccCCCC
Q 015595 284 DWLTEKMRGY------------NFTVSSMHGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQVSLVINYDLPNN 350 (404)
Q Consensus 284 ~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s 350 (404)
+.+++.|+.. |.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||++++|+|
T Consensus 404 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s 483 (556)
T 4a2p_A 404 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGN 483 (556)
T ss_dssp HHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCSC
T ss_pred HHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCC
Confidence 9999999876 4455566788999999999999999 99999999999999999999999999999999
Q ss_pred hhhhhhhccccCCCCCceeEEEEeccCcHHHH
Q 015595 351 RELYIHRIGRSGRFGRKGVAINFVKNDDIKIL 382 (404)
Q Consensus 351 ~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~ 382 (404)
+..|+||+|| ||. +.|.+++++.+.+....
T Consensus 484 ~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 484 VTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp HHHHHHC----------CCEEEEESCHHHHHH
T ss_pred HHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 9999999999 998 78999999998866443
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.6e-44 Score=349.90 Aligned_cols=327 Identities=19% Similarity=0.255 Sum_probs=228.5
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCC--ceeEEEEcccHHHHHHHHHHHHHHccccCeeE
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFINIQA 132 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~ 132 (404)
+|+++|.++++.+++++++++.+|||+|||+++++++...+..... +.++||++|+++|+.|+.+.++++....++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 7999999999999999999999999999999999999888866432 56799999999999999999999988778999
Q ss_pred EEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEeccccccccC-cHHHHHHHHhhC-----CC
Q 015595 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDESDEMLSRG-FKDQIYDVYRYL-----PP 203 (404)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~-----~~ 203 (404)
..++|+......+.....+++|+|+||+.+...+... .+..++++|+||||++.+.. +...+...+... ..
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 9999998776666666667999999999999998875 45678999999999988764 333333333321 24
Q ss_pred CceEEEEeeecchH-----------HHHHHHhccCCCeEEEecCC-----ccccCCceEEEEEec---------------
Q 015595 204 DLQVVLISATLPHE-----------ILEMTTKFMTDPVKILVKRD-----ELTLEGIKQFFVAVE--------------- 252 (404)
Q Consensus 204 ~~~~i~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--------------- 252 (404)
.++++++|||+... +..+.. .+........... .... .....+....
T Consensus 164 ~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 164 LPQVVGLTASVGVGDAKTAEEAMQHICKLCA-ALDASVIATVRDNVAELEQVVY-KPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp CCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HTTCSEEECCCSCHHHHHTTCC-CCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCeEEEEecCcccCccccHHHHHHHHHHHHH-hcCCeeeeccccCHHHHHhhcC-CCceEEEEecCcccChHHHHHHHHH
Confidence 57899999999542 111111 1111111110000 0000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015595 253 -------------------------------------------------------------------------------- 252 (404)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (404)
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence
Q ss_pred ----------------------------------------------CchhHHHHHHhhhhc----CCCCeEEEEecchhh
Q 015595 253 ----------------------------------------------REEWKFDTLCDLYDT----LTITQAVIFCNTKRK 282 (404)
Q Consensus 253 ----------------------------------------------~~~~~~~~l~~~l~~----~~~~k~lIf~~~~~~ 282 (404)
....|...+.+++.. ..++++||||++..+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 012244555555543 456899999999999
Q ss_pred HHHHHHHHhhCC------------CeEEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCccccCCCCCCCCEEEEccCCC
Q 015595 283 VDWLTEKMRGYN------------FTVSSMHGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQVSLVINYDLPN 349 (404)
Q Consensus 283 ~~~l~~~l~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~ 349 (404)
++.+++.|...+ .....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||++++|+
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~ 481 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG 481 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCS
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCC
Confidence 999999998763 234455669999999999999999 9999999999999999999999999999999
Q ss_pred ChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHH
Q 015595 350 NRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI 385 (404)
Q Consensus 350 s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 385 (404)
|+..|+||+|| ||. +.|.+++++.+.+......+
T Consensus 482 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 482 NVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999 898 88999999999877666555
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-45 Score=369.93 Aligned_cols=346 Identities=19% Similarity=0.260 Sum_probs=265.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
..|...++++.+...+...++..|+++|.++++.+.++++++++||||||||+++.+++...+..+ .+++|++|+++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g---~rvlvl~Ptra 238 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPIKA 238 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT---CEEEEEESSHH
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC---CeEEEEcCcHH
Confidence 356667777666666655666689999999999999999999999999999999999998887543 46999999999
Q ss_pred HHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccC--CCcccceEEeccccccccCc
Q 015595 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLDESDEMLSRGF 190 (404)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~~vIiDE~h~~~~~~~ 190 (404)
|+.|+++.+.+... .+..++|+.... .+++|+|+||+++.+++.+.. +..++++||||+|++.+..+
T Consensus 239 La~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~r 307 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKER 307 (1108)
T ss_dssp HHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHH
T ss_pred HHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccch
Confidence 99999999998764 566677776632 458999999999999887653 56789999999999998888
Q ss_pred HHHHHHHHhhCCCCceEEEEeeecchH--HHHHHHhccCCCeEEEecCCccccCCceEEEEEec---------Cc-----
Q 015595 191 KDQIYDVYRYLPPDLQVVLISATLPHE--ILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE---------RE----- 254 (404)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----- 254 (404)
...+..++..++...++++||||+++. +..++......+..+...... +..+.+++.... ..
T Consensus 308 g~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~~~~~~~ 385 (1108)
T 3l9o_A 308 GVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFRE 385 (1108)
T ss_dssp HHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEETTTEECH
T ss_pred HHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeeccccchhh
Confidence 889999999999999999999998764 445555555555555443221 122222221100 00
Q ss_pred ----------------------------------------hhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCC
Q 015595 255 ----------------------------------------EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN 294 (404)
Q Consensus 255 ----------------------------------------~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~ 294 (404)
......+...+.....+++||||+++..|+.++..|...+
T Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~ 465 (1108)
T 3l9o_A 386 ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD 465 (1108)
T ss_dssp HHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHH
T ss_pred hhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhcc
Confidence 1123334444555567799999999999999999986533
Q ss_pred Ce---------------------------------------EEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCC
Q 015595 295 FT---------------------------------------VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLD 335 (404)
Q Consensus 295 ~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid 335 (404)
+. +..+||++++..|..+++.|++|..+|||||+++++|+|
T Consensus 466 ~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GID 545 (1108)
T 3l9o_A 466 FNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLN 545 (1108)
T ss_dssp HHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCC
T ss_pred CCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCC
Confidence 22 789999999999999999999999999999999999999
Q ss_pred CCCCCEEEEccC--------CCChhhhhhhccccCCCC--CceeEEEEeccCcHHHHHHHHHHHccccccC
Q 015595 336 VQQVSLVINYDL--------PNNRELYIHRIGRSGRFG--RKGVAINFVKNDDIKILRDIEQYYSTQIDEM 396 (404)
Q Consensus 336 ~p~~~~vi~~~~--------p~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (404)
+|++++||+++. |.|..+|+||+||+||.| ..|.+++++++.... ..+.+++......+
T Consensus 546 iP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~--~~~~~l~~~~~~~L 614 (1108)
T 3l9o_A 546 MPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP--QVAKGMVKGQADRL 614 (1108)
T ss_dssp C--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCH--HHHHHHHHCCCCCC
T ss_pred CCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCH--HHHHHHhcCCCccc
Confidence 999999997655 346778999999999999 569999998876322 23444454444333
No 26
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.9e-44 Score=339.75 Aligned_cols=322 Identities=20% Similarity=0.266 Sum_probs=246.9
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEE
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~ 134 (404)
+|++||.++++.++++ ++++.+|||+|||++++.++...+. ..+.++||++|+++|+.||.+++.++.......+..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 7999999999999998 9999999999999999998887765 234579999999999999999999987545557888
Q ss_pred EEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEee
Q 015595 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 212 (404)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 212 (404)
++|+....... .....++|+|+||+.+...+... ....++++|+||+|++.+......+...+....+..++++|||
T Consensus 86 ~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 88877655433 23345899999999999988754 4667899999999998866544455555555556788999999
Q ss_pred ecchH---HHHHHHhccCCCeEEEecCCccc---cCCceEEEEEec----------------------------------
Q 015595 213 TLPHE---ILEMTTKFMTDPVKILVKRDELT---LEGIKQFFVAVE---------------------------------- 252 (404)
Q Consensus 213 T~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------------------------------- 252 (404)
|+... +..++.................. .......+....
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 99743 33333332221111111100000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015595 253 -------------------------------------------------------------------------------- 252 (404)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (404)
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence
Q ss_pred ---------------CchhHHHHHHhhhhc----CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecC--------CCC
Q 015595 253 ---------------REEWKFDTLCDLYDT----LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHG--------DMP 305 (404)
Q Consensus 253 ---------------~~~~~~~~l~~~l~~----~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~--------~~~ 305 (404)
....|...+.+++.. ..++++||||++...++.+++.|+..++.+..+|| +++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~ 404 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLS 404 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCC
Confidence 122355556666655 56889999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHH
Q 015595 306 QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKI 381 (404)
Q Consensus 306 ~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 381 (404)
..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|+|+..|.||+||+||.|+ |.++.++.+++...
T Consensus 405 ~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 405 QREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 99999999987664
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5.9e-44 Score=357.27 Aligned_cols=330 Identities=18% Similarity=0.226 Sum_probs=207.6
Q ss_pred HCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCC--ceeEEEEcccHHHHHHHHHHHHHHccc
Q 015595 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDF 127 (404)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~L~~q~~~~~~~~~~~ 127 (404)
.+|+..|+++|.++++.++.++++++++|||+|||+++++++...+..... +.++||++|+++|+.|+.+.++++...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 356889999999999999999999999999999999999999888866432 567999999999999999999999877
Q ss_pred cCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEeccccccccCcHHH-HHHHHhh---
Q 015595 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDESDEMLSRGFKDQ-IYDVYRY--- 200 (404)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE~h~~~~~~~~~~-~~~~~~~--- 200 (404)
.++.+..++|+............+++|+|+||+++.+.+... .+..++++|+||||++........ +......
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 789999999998776666667778999999999999998875 355789999999999887643332 2233222
Q ss_pred -CCCCceEEEEeeecch-----------HHHHHHHh------------------ccCCCeEEEecCCccccCC-------
Q 015595 201 -LPPDLQVVLISATLPH-----------EILEMTTK------------------FMTDPVKILVKRDELTLEG------- 243 (404)
Q Consensus 201 -~~~~~~~i~~SAT~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~------- 243 (404)
..+.++++++|||+.. .+..+... +...+..............
T Consensus 403 ~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (797)
T 4a2q_A 403 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 482 (797)
T ss_dssp TCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHH
T ss_pred cCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHH
Confidence 1456899999999952 22222111 1111111111000000000
Q ss_pred -----------------ceEEEEE----------e---------------------------------------------
Q 015595 244 -----------------IKQFFVA----------V--------------------------------------------- 251 (404)
Q Consensus 244 -----------------~~~~~~~----------~--------------------------------------------- 251 (404)
+...... +
T Consensus 483 l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 562 (797)
T 4a2q_A 483 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (797)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 0000000 0
Q ss_pred ----------------------------------------------cCchhHHHHHHhhhhc----CCCCeEEEEecchh
Q 015595 252 ----------------------------------------------EREEWKFDTLCDLYDT----LTITQAVIFCNTKR 281 (404)
Q Consensus 252 ----------------------------------------------~~~~~~~~~l~~~l~~----~~~~k~lIf~~~~~ 281 (404)
.....|...+..++.. ..+.++||||+++.
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~ 642 (797)
T 4a2q_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 642 (797)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHH
T ss_pred cHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHH
Confidence 0012244455555543 56689999999999
Q ss_pred hHHHHHHHHhhC------------CCeEEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCccccCCCCCCCCEEEEccCC
Q 015595 282 KVDWLTEKMRGY------------NFTVSSMHGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQVSLVINYDLP 348 (404)
Q Consensus 282 ~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p 348 (404)
.++.+++.|+.. |.....+||+++..+|..+++.|++ |+.+|||||+++++|+|+|++++||++++|
T Consensus 643 ~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p 722 (797)
T 4a2q_A 643 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 722 (797)
T ss_dssp HHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCC
T ss_pred HHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999873 4556677889999999999999999 999999999999999999999999999999
Q ss_pred CChhhhhhhccccCCCCCceeEEEEeccCcHHH
Q 015595 349 NNRELYIHRIGRSGRFGRKGVAINFVKNDDIKI 381 (404)
Q Consensus 349 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 381 (404)
+|+..|+||+|| ||. +.|.+++++.+.+...
T Consensus 723 ~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 723 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp SCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 999999999999 998 7899999998876643
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-43 Score=353.35 Aligned_cols=318 Identities=20% Similarity=0.319 Sum_probs=251.7
Q ss_pred HHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHcccc
Q 015595 49 YQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (404)
Q Consensus 49 ~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 128 (404)
...+| +|+++|.++++.+.+++++++++|||+|||+++.+++...+.. +.+++|++|+++|+.|+++.+.+...
T Consensus 81 ~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 81 RTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp CCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred HhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 34566 6999999999999999999999999999999999888877754 35799999999999999999998764
Q ss_pred CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHHHhhCCCCce
Q 015595 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQ 206 (404)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 206 (404)
.+..++|+.... ...+|+|+||+.+.+++.+. .+..++++||||+|.+.+...+..+..++..++...+
T Consensus 155 --~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~ 225 (1010)
T 2xgj_A 155 --DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR 225 (1010)
T ss_dssp --CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCE
T ss_pred --CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCe
Confidence 566777776543 24899999999999887754 4678899999999999988888888899999999999
Q ss_pred EEEEeeecchHH--HHHHHhccCCCeEEEecCCccccCCceEEEEEec---------Cc---------------------
Q 015595 207 VVLISATLPHEI--LEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE---------RE--------------------- 254 (404)
Q Consensus 207 ~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------------- 254 (404)
+++||||+++.. ..++......+..+...... +..+.+++.... ..
T Consensus 226 il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (1010)
T 2xgj_A 226 YVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGD 303 (1010)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-----
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcc
Confidence 999999998742 23443334445444433221 222333322110 00
Q ss_pred ------------------------hhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCC---------------
Q 015595 255 ------------------------EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNF--------------- 295 (404)
Q Consensus 255 ------------------------~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~--------------- 295 (404)
......+...+......++||||+++..++.++..|...++
T Consensus 304 ~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~ 383 (1010)
T 2xgj_A 304 DPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNN 383 (1010)
T ss_dssp -------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 11223344444444566899999999999999999977543
Q ss_pred ------------------------eEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE----ccC
Q 015595 296 ------------------------TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YDL 347 (404)
Q Consensus 296 ------------------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~----~~~ 347 (404)
.+..+||+++..+|..+++.|++|.++|||||+++++|+|+|++++||. |+.
T Consensus 384 ~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~ 463 (1010)
T 2xgj_A 384 AIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDG 463 (1010)
T ss_dssp HHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECS
T ss_pred HHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCC
Confidence 2788999999999999999999999999999999999999999999998 888
Q ss_pred ----CCChhhhhhhccccCCCCCc--eeEEEEeccC-cHHHHH
Q 015595 348 ----PNNRELYIHRIGRSGRFGRK--GVAINFVKND-DIKILR 383 (404)
Q Consensus 348 ----p~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~-~~~~~~ 383 (404)
|.|..+|.||+||+||.|++ |.+++++++. +...+.
T Consensus 464 ~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~ 506 (1010)
T 2xgj_A 464 QQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAK 506 (1010)
T ss_dssp SCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHH
T ss_pred cCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHH
Confidence 88999999999999999974 9999999876 444333
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=8.8e-44 Score=361.82 Aligned_cols=320 Identities=18% Similarity=0.267 Sum_probs=256.0
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|| +|+++|.++++.++++++++++||||||||+++++++...+. .+.++||++|+++|+.|+.+.++++. ..++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i 149 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQKLA-DEKV 149 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHHTTS-CTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHHHHHhh-CCCC
Confidence 678 799999999999999999999999999999988888777663 34569999999999999999999977 6788
Q ss_pred eEEEEEcCcch---HHHHHHHhcC-CCeEEeChHHHHHHHHccCCCcccceEEeccccccc-----------cCcHHH-H
Q 015595 131 QAHACVGGKSV---GEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLS-----------RGFKDQ-I 194 (404)
Q Consensus 131 ~~~~~~~~~~~---~~~~~~~~~~-~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~-----------~~~~~~-~ 194 (404)
.+..++|+... ......+..+ ++|+|+||+++.+++....+..++++|+||+|++.. .++... +
T Consensus 150 ~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i 229 (1104)
T 4ddu_A 150 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEII 229 (1104)
T ss_dssp CEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHH
T ss_pred eEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHH
Confidence 99999999877 4555666655 999999999998887766677889999999997654 455555 6
Q ss_pred HHHHhhCC-----------CCceEEEEeeec-chHHHH-HHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHH
Q 015595 195 YDVYRYLP-----------PDLQVVLISATL-PHEILE-MTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTL 261 (404)
Q Consensus 195 ~~~~~~~~-----------~~~~~i~~SAT~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (404)
..+++.++ ...|++++|||+ +..+.. +....+. +..........++.+.+... .+...+
T Consensus 230 ~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~----~k~~~L 301 (1104)
T 4ddu_A 230 RKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS----RSKEKL 301 (1104)
T ss_dssp HHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC----CCHHHH
T ss_pred HHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec----CHHHHH
Confidence 77777665 788999999994 443332 2222222 22233334455666666544 255566
Q ss_pred HhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEE-EecCCCCHHHHHHHHHHHhcCCCcEEEE----cCccccCCCC
Q 015595 262 CDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVS-SMHGDMPQKERDAIMGEFRSGTTRVLIT----TDVWARGLDV 336 (404)
Q Consensus 262 ~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vlv~----t~~~~~Gid~ 336 (404)
..++.. .++++||||++++.++.++..|+..++.+. .+||. |++ ++.|++|+.+|||| |+++++|+|+
T Consensus 302 ~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDi 374 (1104)
T 4ddu_A 302 VELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDL 374 (1104)
T ss_dssp HHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCC
T ss_pred HHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcC
Confidence 666666 348999999999999999999999999998 99982 555 99999999999999 9999999999
Q ss_pred CC-CCEEEEccCCC------------------------------------------------------------------
Q 015595 337 QQ-VSLVINYDLPN------------------------------------------------------------------ 349 (404)
Q Consensus 337 p~-~~~vi~~~~p~------------------------------------------------------------------ 349 (404)
|+ +++||++++|.
T Consensus 375 p~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~ 454 (1104)
T 4ddu_A 375 PERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDED 454 (1104)
T ss_dssp TTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTT
T ss_pred CCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCe
Confidence 99 99999999998
Q ss_pred ------ChhhhhhhccccCCCCCce--eEEEEeccCcHHHHHHHHHHHc
Q 015595 350 ------NRELYIHRIGRSGRFGRKG--VAINFVKNDDIKILRDIEQYYS 390 (404)
Q Consensus 350 ------s~~~~~Q~~GR~~R~g~~~--~~~~~~~~~~~~~~~~~~~~~~ 390 (404)
+..+|+||.||+||.|..| .++.++-.+|...++.+++.++
T Consensus 455 ~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 455 LELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp TEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred eEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7789999999999976432 3344444478888889998887
No 30
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.3e-44 Score=368.15 Aligned_cols=320 Identities=18% Similarity=0.265 Sum_probs=253.9
Q ss_pred HCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccC
Q 015595 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (404)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 129 (404)
.+||. | ++|.++++.+++|+++++++|||||||+ +.++++..+... +.+++|++|+++|+.|+.+.+++++...+
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~~l~~~~~ 127 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRKYAEKAG 127 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 37997 9 9999999999999999999999999998 666666655433 45799999999999999999999988777
Q ss_pred e----eEEEEEcCcchHHH---HHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhC-
Q 015595 130 I----QAHACVGGKSVGED---IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYL- 201 (404)
Q Consensus 130 ~----~~~~~~~~~~~~~~---~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~- 201 (404)
+ .+..++|+.....+ ...+.+ ++|+|+||+++.+++.+ +..++++|+||+|++.+ +...+..++..+
T Consensus 128 i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~--L~~l~~lViDEah~~l~--~~~~~~~i~~~lg 202 (1054)
T 1gku_B 128 VGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE--LGHFDFIFVDDVDAILK--ASKNVDKLLHLLG 202 (1054)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT--SCCCSEEEESCHHHHHT--STHHHHHHHHHTT
T ss_pred CCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH--hccCCEEEEeChhhhhh--ccccHHHHHHHhC
Confidence 7 88889998877653 233345 99999999999988776 67889999999999887 456777776665
Q ss_pred ----------CCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCC
Q 015595 202 ----------PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 271 (404)
Q Consensus 202 ----------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 271 (404)
+...|.+++|||+++. ......++.++..+...........+.+.+. ...+...+..+++.. ++
T Consensus 203 f~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~----~~~k~~~L~~ll~~~-~~ 276 (1054)
T 1gku_B 203 FHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV----NDESISTLSSILEKL-GT 276 (1054)
T ss_dssp EEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE----SCCCTTTTHHHHTTS-CS
T ss_pred cchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe----chhHHHHHHHHHhhc-CC
Confidence 3467899999999876 4222223222333333333344455555554 133556666777664 57
Q ss_pred eEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEE----cCccccCCCCCCC-CEEEEcc
Q 015595 272 QAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT----TDVWARGLDVQQV-SLVINYD 346 (404)
Q Consensus 272 k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~----t~~~~~Gid~p~~-~~vi~~~ 346 (404)
++||||++++.++.+++.|+.. +.+..+||++ ..+++.|++|+.+|||| |+++++|+|+|++ ++||+++
T Consensus 277 ~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~ 350 (1054)
T 1gku_B 277 GGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVG 350 (1054)
T ss_dssp CEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEES
T ss_pred CEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeC
Confidence 8999999999999999999988 9999999997 47889999999999999 8999999999995 9999999
Q ss_pred CC-----------------------------------------------------------------------CChhhhh
Q 015595 347 LP-----------------------------------------------------------------------NNRELYI 355 (404)
Q Consensus 347 ~p-----------------------------------------------------------------------~s~~~~~ 355 (404)
.| .|..+|+
T Consensus 351 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yi 430 (1054)
T 1gku_B 351 CPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYI 430 (1054)
T ss_dssp CCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHH
T ss_pred CCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHh
Confidence 99 7899999
Q ss_pred hhccccCCCCCce--eEEEEeccCcHHHHHHHHHHHcc
Q 015595 356 HRIGRSGRFGRKG--VAINFVKNDDIKILRDIEQYYST 391 (404)
Q Consensus 356 Q~~GR~~R~g~~~--~~~~~~~~~~~~~~~~~~~~~~~ 391 (404)
||+||+||.|..| .+++++..++...+..+++.++.
T Consensus 431 Qr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 431 QGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred hhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 9999999987775 48888888899999999999886
No 31
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=4.2e-43 Score=354.45 Aligned_cols=329 Identities=18% Similarity=0.230 Sum_probs=206.6
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCC--ceeEEEEcccHHHHHHHHHHHHHHcccc
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFI 128 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~L~~q~~~~~~~~~~~~ 128 (404)
.|+..|+++|.++++.+++|+++++.+|||+|||+++++++...+..... +.++||++|+++|+.|+.+.++++....
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 46779999999999999999999999999999999999999888766432 5679999999999999999999988777
Q ss_pred CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEeccccccccCc-HHHHHHHHhh----
Q 015595 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDESDEMLSRGF-KDQIYDVYRY---- 200 (404)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE~h~~~~~~~-~~~~~~~~~~---- 200 (404)
++.+..++|+............+++|+|+||+++.+.+... .+..++++|+||||++..... ...+..+...
T Consensus 324 ~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~ 403 (936)
T 4a2w_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 403 (936)
T ss_dssp TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTT
T ss_pred CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhcc
Confidence 89999999988665555555566999999999999998875 355689999999999887642 2333333322
Q ss_pred CCCCceEEEEeeecch-----------HHHHHHH------------------hccCCCeEEEecCCccccCC--------
Q 015595 201 LPPDLQVVLISATLPH-----------EILEMTT------------------KFMTDPVKILVKRDELTLEG-------- 243 (404)
Q Consensus 201 ~~~~~~~i~~SAT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~-------- 243 (404)
..+.++++++|||+.. .+..+.. .+...|..............
T Consensus 404 ~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l 483 (936)
T 4a2w_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 483 (936)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHH
Confidence 1456889999999942 1111111 11122221111111000000
Q ss_pred ----------------ceEEEEE----------e----------------------------------------------
Q 015595 244 ----------------IKQFFVA----------V---------------------------------------------- 251 (404)
Q Consensus 244 ----------------~~~~~~~----------~---------------------------------------------- 251 (404)
+...... +
T Consensus 484 ~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~ 563 (936)
T 4a2w_A 484 MSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 563 (936)
T ss_dssp HHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 0000000 0
Q ss_pred ---------------------------------------------cCchhHHHHHHhhhhc----CCCCeEEEEecchhh
Q 015595 252 ---------------------------------------------EREEWKFDTLCDLYDT----LTITQAVIFCNTKRK 282 (404)
Q Consensus 252 ---------------------------------------------~~~~~~~~~l~~~l~~----~~~~k~lIf~~~~~~ 282 (404)
.....|...+.+++.. ..+.++||||+++..
T Consensus 564 ~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ 643 (936)
T 4a2w_A 564 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 643 (936)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHH
Confidence 0012244445555544 356899999999999
Q ss_pred HHHHHHHHhhC------------CCeEEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCccccCCCCCCCCEEEEccCCC
Q 015595 283 VDWLTEKMRGY------------NFTVSSMHGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQVSLVINYDLPN 349 (404)
Q Consensus 283 ~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~ 349 (404)
++.+++.|... |.....+||+++..+|.++++.|++ |..+|||||+++++|+|+|++++||++++|+
T Consensus 644 ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~ 723 (936)
T 4a2w_A 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG 723 (936)
T ss_dssp HHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCCS
T ss_pred HHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCC
Confidence 99999999876 4455667889999999999999998 9999999999999999999999999999999
Q ss_pred ChhhhhhhccccCCCCCceeEEEEeccCcHHH
Q 015595 350 NRELYIHRIGRSGRFGRKGVAINFVKNDDIKI 381 (404)
Q Consensus 350 s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 381 (404)
|+..|+||+|| ||. +.|.+++++...+...
T Consensus 724 s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 724 NVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp CSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred CHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 99999999999 998 7899999998876543
No 32
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.3e-41 Score=341.44 Aligned_cols=309 Identities=18% Similarity=0.273 Sum_probs=240.5
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.+| +|+++|.++++.+++++++++.+|||+|||+++++++...... +.+++|++|+++|+.|+++.+.+... ++
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~--~~ 109 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD--DV 109 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC----C
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC--CC
Confidence 456 6999999999999999999999999999999988888776543 34699999999999999999988543 56
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEE
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 208 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 208 (404)
.+..++|+.... ...+|+|+||+.+.+.+... .+..++++||||+|.+.+..+...+..++..+++..++|
T Consensus 110 ~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iI 182 (997)
T 4a4z_A 110 NIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFI 182 (997)
T ss_dssp CEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEE
T ss_pred eEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEE
Confidence 778888877543 34899999999999888765 467889999999999998888888889999999999999
Q ss_pred EEeeecchHH--HHHHHhccCCCeEEEecCCccccCCceEEEE-------------------------------------
Q 015595 209 LISATLPHEI--LEMTTKFMTDPVKILVKRDELTLEGIKQFFV------------------------------------- 249 (404)
Q Consensus 209 ~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 249 (404)
++|||+++.. ..++......+..+..... .+..+.+++.
T Consensus 183 lLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~--r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 260 (997)
T 4a4z_A 183 LLSATVPNTYEFANWIGRTKQKNIYVISTPK--RPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPS 260 (997)
T ss_dssp EEECCCTTHHHHHHHHHHHHTCCEEEEECSS--CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---------
T ss_pred EEcCCCCChHHHHHHHhcccCCceEEEecCC--CCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccc
Confidence 9999987642 2222211112222211111 0111111110
Q ss_pred -------------------------------------------------------EecCchhHHHHHHhhhhcCCCCeEE
Q 015595 250 -------------------------------------------------------AVEREEWKFDTLCDLYDTLTITQAV 274 (404)
Q Consensus 250 -------------------------------------------------------~~~~~~~~~~~l~~~l~~~~~~k~l 274 (404)
.......+...+...+......++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~I 340 (997)
T 4a4z_A 261 KTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMV 340 (997)
T ss_dssp --------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEE
Confidence 0001122455667777777778999
Q ss_pred EEecchhhHHHHHHHHhhCCC---------------------------------------eEEEecCCCCHHHHHHHHHH
Q 015595 275 IFCNTKRKVDWLTEKMRGYNF---------------------------------------TVSSMHGDMPQKERDAIMGE 315 (404)
Q Consensus 275 If~~~~~~~~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~~~ 315 (404)
|||++++.++.++..|...++ .+..+||++++.+|..+++.
T Consensus 341 VF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~ 420 (997)
T 4a4z_A 341 VFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEIL 420 (997)
T ss_dssp EECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHH
Confidence 999999999999999977655 47899999999999999999
Q ss_pred HhcCCCcEEEEcCccccCCCCCCCCEEEEccCCC---------ChhhhhhhccccCCCC--CceeEEEEec
Q 015595 316 FRSGTTRVLITTDVWARGLDVQQVSLVINYDLPN---------NRELYIHRIGRSGRFG--RKGVAINFVK 375 (404)
Q Consensus 316 f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~---------s~~~~~Q~~GR~~R~g--~~~~~~~~~~ 375 (404)
|++|..+|||||+++++|+|+|+ ..||+.+.+. |..+|+|++||+||.| ..|.+++++.
T Consensus 421 F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 421 FSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 99999999999999999999999 7777666555 9999999999999998 4578888874
No 33
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.6e-42 Score=336.88 Aligned_cols=326 Identities=19% Similarity=0.238 Sum_probs=240.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHhhhhhhcC------CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHH
Q 015595 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (404)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~ 115 (404)
+.+.+.+...+| .|+++|.++++.++++ +++++++|||||||++++++++..+..+ .+++|++|+++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHH
Confidence 445556677899 9999999999998875 5899999999999999999999887654 45999999999999
Q ss_pred HHHHHHHHHccccCeeEEEEEcCcchHHHH---HHHhc-CCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcH
Q 015595 116 QTEKVILAIGDFINIQAHACVGGKSVGEDI---RKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFK 191 (404)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~ 191 (404)
|+++.+.++....++++..++|+....... ..+.+ .++|+|+||+.+.+ ...+..++++|+||+|++....
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~---~~~~~~l~lVVIDEaHr~g~~q-- 506 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE---DVHFKNLGLVIIDEQHRFGVKQ-- 506 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH---CCCCSCCCEEEEESCCCC------
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh---hhhccCCceEEecccchhhHHH--
Confidence 999999998888889999999988765443 23333 48999999987753 3467888999999999963222
Q ss_pred HHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhh-c-CC
Q 015595 192 DQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-T-LT 269 (404)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~-~~ 269 (404)
...+......+++++||||+.+....+.. .++...............+...+. ... ....+...+. . ..
T Consensus 507 ---r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~---~~~-~~~~l~~~i~~~l~~ 577 (780)
T 1gm5_A 507 ---REALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQTMLV---PMD-RVNEVYEFVRQEVMR 577 (780)
T ss_dssp ----CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCEECCC---CSS-THHHHHHHHHHHTTT
T ss_pred ---HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceEEEEe---ccc-hHHHHHHHHHHHHhc
Confidence 11122223468899999999876555432 222211111111111112222211 111 2222333332 2 24
Q ss_pred CCeEEEEecchh--------hHHHHHHHHhh---CCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCC
Q 015595 270 ITQAVIFCNTKR--------KVDWLTEKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 338 (404)
Q Consensus 270 ~~k~lIf~~~~~--------~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~ 338 (404)
+.+++|||+..+ .++.+++.|+. .++.+..+||+++..+|+.+++.|++|+.+|||||+++++|+|+|+
T Consensus 578 g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~ 657 (780)
T 1gm5_A 578 GGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPR 657 (780)
T ss_dssp SCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTT
T ss_pred CCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCC
Confidence 578999999764 47788888887 3678999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCC-ChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHH
Q 015595 339 VSLVINYDLPN-NRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI 385 (404)
Q Consensus 339 ~~~vi~~~~p~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 385 (404)
+++||+++.|. +...+.||+||+||.|+.|.|++++++.+......+
T Consensus 658 v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 658 ANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp CCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred CCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 99999999985 788899999999999999999999985544443333
No 34
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3e-42 Score=342.26 Aligned_cols=321 Identities=17% Similarity=0.271 Sum_probs=222.1
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCC---CceeEEEEcccHHHHHHH-HHHHHHHccccCe
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILSPTRELATQT-EKVILAIGDFINI 130 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~p~~~L~~q~-~~~~~~~~~~~~~ 130 (404)
.|+++|.++++.+++++++++.+|||+|||+++++++...+..+. .+.++||++|+++|+.|| .+.+++++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 799999999999999999999999999999999999988765431 225699999999999999 9999998754 47
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHH------c--cCCCcccceEEeccccccccC-cHHHHHHHHhh-
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK------R--KTLRTRAIKLLDESDEMLSRG-FKDQIYDVYRY- 200 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~------~--~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~- 200 (404)
.+..++|+.........+....+|+|+||+.+.+.+. . ..+..++++||||||++.... +...+..++..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 8888888877665556666789999999999998773 2 245678999999999876543 22222222221
Q ss_pred ------------CCCCceEEEEeeecchH-----------HHHHHHhccCCCeEEEecC-Ccc--ccCCceEEEEEecC-
Q 015595 201 ------------LPPDLQVVLISATLPHE-----------ILEMTTKFMTDPVKILVKR-DEL--TLEGIKQFFVAVER- 253 (404)
Q Consensus 201 ------------~~~~~~~i~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~- 253 (404)
..+.+++++||||+... +..+...+....+...... ... ........+.....
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 245 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 245 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC--
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccc
Confidence 11567899999999862 1222211111000000000 000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015595 254 -------------------------------------------------------------------------------- 253 (404)
Q Consensus 254 -------------------------------------------------------------------------------- 253 (404)
T Consensus 246 ~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (699)
T 4gl2_A 246 REDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTH 325 (699)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------chhHH----HHHHhhhhcCC-CCeEEE
Q 015595 254 -----------------------------------------------------EEWKF----DTLCDLYDTLT-ITQAVI 275 (404)
Q Consensus 254 -----------------------------------------------------~~~~~----~~l~~~l~~~~-~~k~lI 275 (404)
...+. ..+...+...+ ++++||
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IV 405 (699)
T 4gl2_A 326 LETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGII 405 (699)
T ss_dssp HHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEE
T ss_pred HHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 00111 12222222223 789999
Q ss_pred EecchhhHHHHHHHHhhC------CCeEEEecCC--------CCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCE
Q 015595 276 FCNTKRKVDWLTEKMRGY------NFTVSSMHGD--------MPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSL 341 (404)
Q Consensus 276 f~~~~~~~~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~ 341 (404)
||+++..++.+++.|+.. |+.+..+||+ ++..+|.++++.|++|+.+|||||+++++|+|+|++++
T Consensus 406 F~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~ 485 (699)
T 4gl2_A 406 FTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNI 485 (699)
T ss_dssp ECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCC
T ss_pred EECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCE
Confidence 999999999999999987 8999999999 99999999999999999999999999999999999999
Q ss_pred EEEccCCCChhhhhhhccccCCCCCceeEEEEeccCc
Q 015595 342 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDD 378 (404)
Q Consensus 342 vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 378 (404)
||++++|+|+..|+||+||+||.| +.++++...++
T Consensus 486 VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 486 VIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred EEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 999999999999999999987765 44444444443
No 35
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.5e-40 Score=347.59 Aligned_cols=340 Identities=14% Similarity=0.188 Sum_probs=256.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhhhhhc-CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHH
Q 015595 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (404)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~ 118 (404)
+.+...+++...+|..++|.|.++++.++. +++++++||||||||+++.++++..+...+ +.+++|++|+++|+.|.+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHH
Confidence 445567777788899999999999999976 467999999999999999999998886643 356999999999999999
Q ss_pred HHHHH-HccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc----CCCcccceEEeccccccccCcHHH
Q 015595 119 KVILA-IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLDESDEMLSRGFKDQ 193 (404)
Q Consensus 119 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~----~~~~~~~vIiDE~h~~~~~~~~~~ 193 (404)
+.+.+ ++...+.++..++|+.....+. ..+++|+|+||+++..++.+. .++.++++|+||+|.+.+. .+..
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~ 1065 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPV 1065 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHH
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCcc
Confidence 99876 5666788999888886643332 234899999999998877653 3567899999999987664 3433
Q ss_pred HHH-------HHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhH------HHH
Q 015595 194 IYD-------VYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK------FDT 260 (404)
Q Consensus 194 ~~~-------~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 260 (404)
+.. +....+++.|+|+||||+++. .++..+....+...........+..+............. ...
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~ 1144 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKP 1144 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcch
Confidence 332 333456789999999999763 455544433333333333344444555555544433211 111
Q ss_pred HHh-hhhcCCCCeEEEEecchhhHHHHHHHHhhC----------------------------------CCeEEEecCCCC
Q 015595 261 LCD-LYDTLTITQAVIFCNTKRKVDWLTEKMRGY----------------------------------NFTVSSMHGDMP 305 (404)
Q Consensus 261 l~~-~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~----------------------------------~~~~~~~~~~~~ 305 (404)
+.. +.+...+++++|||++++.++.++..|... ...+..+|++++
T Consensus 1145 ~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~ 1224 (1724)
T 4f92_B 1145 VYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLS 1224 (1724)
T ss_dssp HHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSC
T ss_pred HHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCC
Confidence 222 223445678999999999998887766321 124889999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE----c------cCCCChhhhhhhccccCCCCC--ceeEEEE
Q 015595 306 QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----Y------DLPNNRELYIHRIGRSGRFGR--KGVAINF 373 (404)
Q Consensus 306 ~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~----~------~~p~s~~~~~Q~~GR~~R~g~--~~~~~~~ 373 (404)
..+|..+++.|++|.++|||||+++++|+|+|+..+||. + ..|.+..+|.||+||+||.|. .|.++++
T Consensus 1225 ~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll 1304 (1724)
T 4f92_B 1225 PMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1304 (1724)
T ss_dssp HHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEE
Confidence 999999999999999999999999999999999888873 2 235789999999999999987 4999999
Q ss_pred eccCcHHHHHHH
Q 015595 374 VKNDDIKILRDI 385 (404)
Q Consensus 374 ~~~~~~~~~~~~ 385 (404)
+.+.+...++.+
T Consensus 1305 ~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1305 CQGSKKDFFKKF 1316 (1724)
T ss_dssp EEGGGHHHHHHH
T ss_pred ecchHHHHHHHH
Confidence 998887765543
No 36
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2e-42 Score=330.99 Aligned_cols=309 Identities=17% Similarity=0.166 Sum_probs=230.9
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEE
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~ 134 (404)
+|+++|.++++.+++++++++++|||+|||++++.++...+...+ .++||++|+++|+.||.+.++++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS--SEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC--CeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 899999999999999999999999999999999888877765432 379999999999999999999887666677888
Q ss_pred EEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeec
Q 015595 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 214 (404)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 214 (404)
+.++...... .....+|+|+|++.+.... ...+..++++|+||+|++.. ..+..++..+++..++++||||+
T Consensus 191 ~~~~~~~~~~---~~~~~~I~i~T~~~l~~~~-~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp 262 (510)
T 2oca_A 191 IGGGASKDDK---YKNDAPVVVGTWQTVVKQP-KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSL 262 (510)
T ss_dssp CGGGCCTTGG---GCTTCSEEEEEHHHHTTSC-GGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEESCG
T ss_pred EecCCccccc---cccCCcEEEEeHHHHhhch-hhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEeCC
Confidence 8877665443 3456899999999765331 13466789999999999865 44666777777788999999999
Q ss_pred chHHHHHH--HhccCCCeEEEecCC------ccccCCceEEEEEecC--------------------chhHHHHHHhhhh
Q 015595 215 PHEILEMT--TKFMTDPVKILVKRD------ELTLEGIKQFFVAVER--------------------EEWKFDTLCDLYD 266 (404)
Q Consensus 215 ~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~l~ 266 (404)
++...... ...++ +..+..... ...+..+.......+. ...+...+..++.
T Consensus 263 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 341 (510)
T 2oca_A 263 RDGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAI 341 (510)
T ss_dssp GGCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHH
Confidence 76532211 11222 211111111 1111111111111110 0112333444444
Q ss_pred cC---CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-CccccCCCCCCCCEE
Q 015595 267 TL---TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT-DVWARGLDVQQVSLV 342 (404)
Q Consensus 267 ~~---~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t-~~~~~Gid~p~~~~v 342 (404)
.. .+.++|||++ .++++.+++.|...+..+..+||+++..+|+++++.|++|+.+||||| +++++|+|+|++++|
T Consensus 342 ~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~v 420 (510)
T 2oca_A 342 KLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHV 420 (510)
T ss_dssp HHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEE
T ss_pred HHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEE
Confidence 33 3445666666 899999999999988899999999999999999999999999999999 999999999999999
Q ss_pred EEccCCCChhhhhhhccccCCCCCceeEEEEec
Q 015595 343 INYDLPNNRELYIHRIGRSGRFGRKGVAINFVK 375 (404)
Q Consensus 343 i~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 375 (404)
|++++|+|...|.|++||+||.|+.+..+.+++
T Consensus 421 i~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 421 VLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999998774444444
No 37
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=9.1e-40 Score=334.50 Aligned_cols=323 Identities=16% Similarity=0.186 Sum_probs=246.1
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHHhhhhhhc----CC--cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccH
Q 015595 39 GIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIK----GR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (404)
Q Consensus 39 ~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~----~~--~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (404)
+.+....+.+.+ ++| +++++|.++++.+++ ++ ++++++|||+|||.+++.++...+..+ .+++|++|++
T Consensus 587 ~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g---~~vlvlvPt~ 662 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH---KQVAVLVPTT 662 (1151)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT---CEEEEECSSH
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC---CeEEEEechH
Confidence 455555555544 577 689999999999886 55 899999999999999988777665433 4799999999
Q ss_pred HHHHHHHHHHHHHccccCeeEEEEEcCcchHHH---HHHHhc-CCCeEEeChHHHHHHHHccCCCcccceEEeccccccc
Q 015595 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLS 187 (404)
Q Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~ 187 (404)
+|+.|+++.+.+.....++.+..+++....... +..+.. .++|+|+||+.+.. ...+..++++|+||+|++.
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~---~~~~~~l~lvIiDEaH~~g- 738 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS---DVKFKDLGLLIVDEEHRFG- 738 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS---CCCCSSEEEEEEESGGGSC-
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC---CccccccceEEEechHhcC-
Confidence 999999999998877778888888776544332 233333 58999999976532 2357788999999999953
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhc
Q 015595 188 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 267 (404)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 267 (404)
......+..++...++++||||+.+....+....+.++..+ .........+...+....... ....+...+
T Consensus 739 ----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i--~~~~~~r~~i~~~~~~~~~~~-i~~~il~~l-- 809 (1151)
T 2eyq_A 739 ----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII--ATPPARRLAVKTFVREYDSMV-VREAILREI-- 809 (1151)
T ss_dssp ----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEEC--CCCCCBCBCEEEEEEECCHHH-HHHHHHHHH--
T ss_pred ----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEE--ecCCCCccccEEEEecCCHHH-HHHHHHHHH--
Confidence 33344445555678999999999887666655544432221 111222223333333322211 222222222
Q ss_pred CCCCeEEEEecchhhHHHHHHHHhhC--CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEc
Q 015595 268 LTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINY 345 (404)
Q Consensus 268 ~~~~k~lIf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~ 345 (404)
..+++++|||++++.++.+++.|++. +..+..+||+++..+|+++++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 810 ~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~ 889 (1151)
T 2eyq_A 810 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 889 (1151)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEET
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEe
Confidence 24689999999999999999999887 7889999999999999999999999999999999999999999999999999
Q ss_pred cC-CCChhhhhhhccccCCCCCceeEEEEeccCc
Q 015595 346 DL-PNNRELYIHRIGRSGRFGRKGVAINFVKNDD 378 (404)
Q Consensus 346 ~~-p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 378 (404)
+. +.+..+|.||+||+||.|+.|.|++++.+.+
T Consensus 890 ~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 890 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 88 5789999999999999999999999988653
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.1e-40 Score=350.34 Aligned_cols=339 Identities=16% Similarity=0.277 Sum_probs=250.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHhhhhhhc-CCcEEEEcCCCCchhhHhHHHHHhhhhcC--------CCceeEEEEccc
Q 015595 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTS--------SREVQALILSPT 110 (404)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~iv~a~tGsGKT~~~~~~~~~~~~~~--------~~~~~~lil~p~ 110 (404)
|+++...++ .||..+++.|..+++.++. +++++++||||||||+++.++++..+... ..+.+++|++|+
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 444443332 2788999999999998775 67999999999999999999999887542 235689999999
Q ss_pred HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc----CCCcccceEEecccccc
Q 015595 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLDESDEML 186 (404)
Q Consensus 111 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~----~~~~~~~vIiDE~h~~~ 186 (404)
++|+.|..+.+++.....++.+..++|+.....+. ..+++|+|+|||++..++.+. .+..++++|+||+|.+.
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC
Confidence 99999999999998888899999999987653321 245899999999997766543 25678999999999776
Q ss_pred ccCcHHHHHHH-------HhhCCCCceEEEEeeecchHHHHHHHhccCCC-eEEEecCCccccCCceEEEEEecCch--h
Q 015595 187 SRGFKDQIYDV-------YRYLPPDLQVVLISATLPHEILEMTTKFMTDP-VKILVKRDELTLEGIKQFFVAVEREE--W 256 (404)
Q Consensus 187 ~~~~~~~~~~~-------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 256 (404)
+ ..+..+..+ ....++..|+|+||||+++. .+...+....+ ...........+..+.+.+....... .
T Consensus 221 d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~ 298 (1724)
T 4f92_B 221 D-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIK 298 (1724)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHH
T ss_pred C-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhh
Confidence 5 334433322 23456789999999999763 44443332221 11222233333444555444433321 1
Q ss_pred HH----HHHHh-hhhcCCCCeEEEEecchhhHHHHHHHHhhC-------------------------------------C
Q 015595 257 KF----DTLCD-LYDTLTITQAVIFCNTKRKVDWLTEKMRGY-------------------------------------N 294 (404)
Q Consensus 257 ~~----~~l~~-~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~-------------------------------------~ 294 (404)
.. ..+.. +.+...++++||||++++.++.+++.|.+. .
T Consensus 299 ~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 378 (1724)
T 4f92_B 299 RFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLP 378 (1724)
T ss_dssp HHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhh
Confidence 11 12222 233345578999999999998888877531 1
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE----cc------CCCChhhhhhhccccCCC
Q 015595 295 FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----YD------LPNNRELYIHRIGRSGRF 364 (404)
Q Consensus 295 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~----~~------~p~s~~~~~Q~~GR~~R~ 364 (404)
..+..+||+++..+|..+++.|++|.++|||||++++.|+|+|..+.||. ++ .|.+..+|.||+|||||.
T Consensus 379 ~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~ 458 (1724)
T 4f92_B 379 YGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRP 458 (1724)
T ss_dssp TTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCT
T ss_pred cCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCC
Confidence 23789999999999999999999999999999999999999999998884 33 356899999999999998
Q ss_pred CC--ceeEEEEeccCcHHHHHHH
Q 015595 365 GR--KGVAINFVKNDDIKILRDI 385 (404)
Q Consensus 365 g~--~~~~~~~~~~~~~~~~~~~ 385 (404)
|. .|.+++++.+++...+..+
T Consensus 459 g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 459 QYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCccEEEEEecchhHHHHHHH
Confidence 75 5999999998877655444
No 39
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1e-39 Score=313.48 Aligned_cols=320 Identities=18% Similarity=0.207 Sum_probs=241.1
Q ss_pred HCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccC
Q 015595 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (404)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 129 (404)
..|+ +|++.|..+++.+++|+ +..++||+|||+++.++++.....+ ..++|++|+++|+.|..+++..+...++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g---~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTG---KGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTS---SCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4799 99999999999999998 9999999999999999998443333 3599999999999999999999999999
Q ss_pred eeEEEEEcCcchHHHHHHHhcCCCeEEeChHHH-HHHHHcc--------CCCcccceEEecccccc-ccC----------
Q 015595 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK--------TLRTRAIKLLDESDEML-SRG---------- 189 (404)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~--------~~~~~~~vIiDE~h~~~-~~~---------- 189 (404)
+++..+.||.+...+. ...+++|+|+||++| .+++..+ .+..+.++|+||+|.++ +..
T Consensus 153 l~v~~i~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 9999999998764433 334689999999999 5555432 34677899999999987 442
Q ss_pred -----cHHHHHHHHhhCCC---------CceEE-----------------EEeeecch---HHHHHHH--hccCCCeEEE
Q 015595 190 -----FKDQIYDVYRYLPP---------DLQVV-----------------LISATLPH---EILEMTT--KFMTDPVKIL 233 (404)
Q Consensus 190 -----~~~~~~~~~~~~~~---------~~~~i-----------------~~SAT~~~---~~~~~~~--~~~~~~~~~~ 233 (404)
+...+..+...+++ ..|++ ++|||.+. .+...+. .++.....+.
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 56778888888863 45665 77888653 2222111 1111100000
Q ss_pred --------ec----------------------------------------------------------------------
Q 015595 234 --------VK---------------------------------------------------------------------- 235 (404)
Q Consensus 234 --------~~---------------------------------------------------------------------- 235 (404)
++
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 00
Q ss_pred -----CCccccCCceEEEEEecCchhHHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHH
Q 015595 236 -----RDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKE 308 (404)
Q Consensus 236 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 308 (404)
+.........+..........|...+...+.. ..+.++||||+|++.++.+++.|+..|+.+..+||++...+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 00000000001111223345577777776654 24678999999999999999999999999999999987666
Q ss_pred HHHHHHHHhcCCCcEEEEcCccccCCCCC--------CCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcH
Q 015595 309 RDAIMGEFRSGTTRVLITTDVWARGLDVQ--------QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 379 (404)
Q Consensus 309 r~~~~~~f~~~~~~vlv~t~~~~~Gid~p--------~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 379 (404)
+..+.+.|+.| .|+|||+++++|+|++ ++.+||.++.|.|...|.||+||+||.|++|.+++|++.+|.
T Consensus 471 r~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 471 AQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 65555555444 6999999999999999 788999999999999999999999999999999999998764
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.1e-40 Score=312.78 Aligned_cols=296 Identities=16% Similarity=0.193 Sum_probs=223.7
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCee-EE
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ-AH 133 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~-~~ 133 (404)
.|+++|.++++.+++++++++++|||+|||++++.++... +.++||+||+++|+.||.+.+.++ +.. +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 6999999999999999999999999999999998887654 346999999999999999999884 566 77
Q ss_pred EEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeee
Q 015595 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 213 (404)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 213 (404)
.++|+... ..+|+|+|++.+...+... ...++++|+||+|++.+..+.. +...+ +..+++++|||
T Consensus 163 ~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~-~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSAT 227 (472)
T 2fwr_A 163 EFSGRIKE---------LKPLTVSTYDSAYVNAEKL-GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTAT 227 (472)
T ss_dssp EBSSSCBC---------CCSEEEEEHHHHHHTHHHH-TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESC
T ss_pred EECCCcCC---------cCCEEEEEcHHHHHHHHHh-cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEecC
Confidence 77776543 4789999999988766532 2458999999999998877654 44444 46789999999
Q ss_pred cchH-------------------HHHHHHhccCCCeEEE--ecCCcc------------------------ccCCceEEE
Q 015595 214 LPHE-------------------ILEMTTKFMTDPVKIL--VKRDEL------------------------TLEGIKQFF 248 (404)
Q Consensus 214 ~~~~-------------------~~~~~~~~~~~~~~~~--~~~~~~------------------------~~~~~~~~~ 248 (404)
+... ...+...++..+.... ...... ....+...+
T Consensus 228 p~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 307 (472)
T 2fwr_A 228 FEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIV 307 (472)
T ss_dssp CCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTT
T ss_pred ccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHH
Confidence 9731 2222222222211110 000000 000000000
Q ss_pred E--------------------EecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHH
Q 015595 249 V--------------------AVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKE 308 (404)
Q Consensus 249 ~--------------------~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 308 (404)
. .......+...+.+++....++++||||++.+.++.+++.|. +..+||+++..+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~ 382 (472)
T 2fwr_A 308 MASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREE 382 (472)
T ss_dssp TTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHH
Confidence 0 001123367788888888788999999999999999999984 567899999999
Q ss_pred HHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCc---eeEEEEeccCcHH
Q 015595 309 RDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK---GVAINFVKNDDIK 380 (404)
Q Consensus 309 r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~---~~~~~~~~~~~~~ 380 (404)
|+++++.|++|+.+|||+|+++++|+|+|++++||+++.|+|...|.|++||+||.|+. ..++.++..+...
T Consensus 383 R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 383 REEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGE 457 (472)
T ss_dssp HHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-
T ss_pred HHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCch
Confidence 99999999999999999999999999999999999999999999999999999999854 4566677766443
No 41
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=3.7e-39 Score=317.84 Aligned_cols=336 Identities=17% Similarity=0.243 Sum_probs=244.9
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhc-CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEE
Q 015595 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (404)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (404)
..+..+|.++++++.+.+.+...+ ..|.+.|+..+..++. +++++++||||||||+.....+.........+.+++++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEE
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEec
Confidence 345678999999999999999888 5788888888877665 56799999999999984333333322222224569999
Q ss_pred cccHHHHHHHHHHHHHHcc-ccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHc-cCCCcccceEEecccc-
Q 015595 108 SPTRELATQTEKVILAIGD-FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLDESDE- 184 (404)
Q Consensus 108 ~p~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~vIiDE~h~- 184 (404)
+|+++|+.|+.+.+.+... ..+..+......... .....+|+++|++.+.+.+.. ..+..++++|+||+|.
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R 220 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHER 220 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGC
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCcccc
Confidence 9999999999887765431 222222221111110 123588999999999876654 4678889999999996
Q ss_pred ccccC-cHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchh---HHHH
Q 015595 185 MLSRG-FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEW---KFDT 260 (404)
Q Consensus 185 ~~~~~-~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 260 (404)
..+.. ....+..+.... +..++++||||++.+ .+ ..++.....+...... ..+..++........ ....
T Consensus 221 ~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~ 293 (773)
T 2xau_A 221 TLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAIRT 293 (773)
T ss_dssp CHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--HH-HHHhcCCCcccccCcc---cceEEEEecCCchhHHHHHHHH
Confidence 44332 233444454443 478999999999653 22 3444444334433332 223444333333221 2334
Q ss_pred HHhhhhcCCCCeEEEEecchhhHHHHHHHHhh-----------CCCeEEEecCCCCHHHHHHHHHHHh-----cCCCcEE
Q 015595 261 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRG-----------YNFTVSSMHGDMPQKERDAIMGEFR-----SGTTRVL 324 (404)
Q Consensus 261 l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~~~~~vl 324 (404)
+..+.....++++||||+++++++.+++.|.+ .++.+..+||+++..+|..+++.|. +|..+||
T Consensus 294 l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVl 373 (773)
T 2xau_A 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVV 373 (773)
T ss_dssp HHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEE
T ss_pred HHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEE
Confidence 44555555678999999999999999999975 5778999999999999999999999 9999999
Q ss_pred EEcCccccCCCCCCCCEEEEccC------------------CCChhhhhhhccccCCCCCceeEEEEeccCcH
Q 015595 325 ITTDVWARGLDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 379 (404)
Q Consensus 325 v~t~~~~~Gid~p~~~~vi~~~~------------------p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 379 (404)
|||+++++|+|+|++++||+++. |.|..+|.||+||+||. +.|.|+.++++.+.
T Consensus 374 VAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 374 ISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999877 88999999999999999 78999999987544
No 42
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.8e-40 Score=315.86 Aligned_cols=322 Identities=15% Similarity=0.097 Sum_probs=228.9
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHH
Q 015595 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (404)
Q Consensus 38 ~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~ 117 (404)
+++++.+.+++.+. ...++|.|+.+++.+++++++++.+|||||||++++++++..+... +.++||++|+++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHH
Confidence 44565555544442 3567888877899999999999999999999999988888776553 35799999999999999
Q ss_pred HHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHH-ccCCCcccceEEeccccccccCcHHHHHH
Q 015595 118 EKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK-RKTLRTRAIKLLDESDEMLSRGFKDQIYD 196 (404)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~-~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 196 (404)
.+.++. ..+. ....... .....+..+.++|.+.+...+. ...+..++++|+||||++ +..+...+..
T Consensus 232 ~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~ 299 (618)
T 2whx_A 232 EEALRG------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGY 299 (618)
T ss_dssp HHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHH
T ss_pred HHHhcC------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHH
Confidence 988752 2222 1111100 0011234566778777765444 346788999999999997 4445555555
Q ss_pred HHhhCC-CCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEE
Q 015595 197 VYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVI 275 (404)
Q Consensus 197 ~~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lI 275 (404)
+...++ ++.|+++||||++.....+.. .++..+..... . +.. ....+...+.. ..+++||
T Consensus 300 i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-~------------~~~--~~~~ll~~l~~-~~~~~LV 360 (618)
T 2whx_A 300 ISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-I------------PER--SWNTGFDWITD-YQGKTVW 360 (618)
T ss_dssp HHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-C------------CSS--CCSSSCHHHHH-CCSCEEE
T ss_pred HHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-C------------CHH--HHHHHHHHHHh-CCCCEEE
Confidence 555553 578999999999876432211 12222222111 0 000 00111122222 3678999
Q ss_pred EecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEE-------------
Q 015595 276 FCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLV------------- 342 (404)
Q Consensus 276 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~v------------- 342 (404)
||++++.++.+++.|+..++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 361 F~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~ 435 (618)
T 2whx_A 361 FVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILT 435 (618)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEEC
T ss_pred EECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecc
Confidence 9999999999999999999999999985 678899999999999999999999999998 8888
Q ss_pred -------EEccCCCChhhhhhhccccCCCCC-ceeEEEEec---cCcHHHHHHHHHHHccccccCCc
Q 015595 343 -------INYDLPNNRELYIHRIGRSGRFGR-KGVAINFVK---NDDIKILRDIEQYYSTQIDEMPM 398 (404)
Q Consensus 343 -------i~~~~p~s~~~~~Q~~GR~~R~g~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 398 (404)
++++.|.|..+|+||+||+||.|. .|.+++++. +++...+..++..+.....++|.
T Consensus 436 ~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 436 DGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp SSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred cCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 667779999999999999999964 899999997 77888888888877554444443
No 43
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.1e-37 Score=298.78 Aligned_cols=319 Identities=16% Similarity=0.183 Sum_probs=222.4
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|. +|++.|..+++.++.|+ +..++||+|||+++.++++.....+ ..++|++||++|+.|..+++..+...+++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g---~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTG---KGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTS---SCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcC---CcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 566 89999999999999997 9999999999999999998544433 35999999999999999999999999999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHH-HHHHHcc--------CCCcccceEEecccccc-ccC-----------
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK--------TLRTRAIKLLDESDEML-SRG----------- 189 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~--------~~~~~~~vIiDE~h~~~-~~~----------- 189 (404)
++..+.||.+... +....+++|+|+||++| .+++..+ ....+.++|+||+|.++ +..
T Consensus 145 ~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 145 TVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp CEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred eEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 9999999987543 33344699999999998 6766543 34678899999999987 322
Q ss_pred ----cHHHHHHHHhhCCC--------------------CceEE------------------------EEeeecchH---H
Q 015595 190 ----FKDQIYDVYRYLPP--------------------DLQVV------------------------LISATLPHE---I 218 (404)
Q Consensus 190 ----~~~~~~~~~~~~~~--------------------~~~~i------------------------~~SAT~~~~---~ 218 (404)
+...+..+...+++ ..++. ++|||.+.. +
T Consensus 223 ~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i 302 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHV 302 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHH
Confidence 34455566655543 23332 678875431 1
Q ss_pred HHHH--HhccCC-------------------------------------CeEEEecCCccccC-----------------
Q 015595 219 LEMT--TKFMTD-------------------------------------PVKILVKRDELTLE----------------- 242 (404)
Q Consensus 219 ~~~~--~~~~~~-------------------------------------~~~~~~~~~~~~~~----------------- 242 (404)
...+ ..++.. +..+.+..+.....
T Consensus 303 ~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~Gm 382 (853)
T 2fsf_A 303 TAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGM 382 (853)
T ss_dssp ------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcC
Confidence 1100 000000 00111111110000
Q ss_pred -----------------------------CceEEEEEecCchhHHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHh
Q 015595 243 -----------------------------GIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMR 291 (404)
Q Consensus 243 -----------------------------~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~ 291 (404)
...+..........|...+...+.. ..+.++||||+|++.++.+++.|+
T Consensus 383 TGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 383 TGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp ECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 0111112223445588888877754 356789999999999999999999
Q ss_pred hCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCC--------------------------------
Q 015595 292 GYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQV-------------------------------- 339 (404)
Q Consensus 292 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~-------------------------------- 339 (404)
..|+++..+||+....++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 463 ~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 540 (853)
T 2fsf_A 463 KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAV 540 (853)
T ss_dssp HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHH
Confidence 9999999999998777777777778777 699999999999999974
Q ss_pred -----CEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcH
Q 015595 340 -----SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 379 (404)
Q Consensus 340 -----~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 379 (404)
.+||.++.|.|...|.|+.||+||.|.+|.+.+|++.+|.
T Consensus 541 ~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 541 LEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999998764
No 44
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.2e-36 Score=291.87 Aligned_cols=322 Identities=17% Similarity=0.207 Sum_probs=243.7
Q ss_pred HCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccC
Q 015595 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (404)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 129 (404)
..|+ +|++.|..+++.++.|+ +..++||+|||+++.++++.....+. .++|++|++.|+.|..+++..+...++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~---~v~VvTpTreLA~Qdae~m~~l~~~lG 180 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGN---GVHIVTVNDYLAKRDSEWMGRVHRFLG 180 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTS---CEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 3688 99999999999999987 99999999999999999965444433 599999999999999999999999999
Q ss_pred eeEEEEEcCcchHHHHHHHhcCCCeEEeChHHH-HHHHHcc--------CCCcccceEEeccccccc-c-----------
Q 015595 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK--------TLRTRAIKLLDESDEMLS-R----------- 188 (404)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~--------~~~~~~~vIiDE~h~~~~-~----------- 188 (404)
+++.++.||.+...+. ...+++|+|+||+.| .+++..+ .+..+.++|+||+|.++. .
T Consensus 181 Lsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 181 LQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp CCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred CeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 9999999998754333 333589999999998 6666543 346778999999999873 2
Q ss_pred ----CcHHHHHHHHhhCC---------CCceEE-----------------EEeeecch---HHHHHHH--hccCC-----
Q 015595 189 ----GFKDQIYDVYRYLP---------PDLQVV-----------------LISATLPH---EILEMTT--KFMTD----- 228 (404)
Q Consensus 189 ----~~~~~~~~~~~~~~---------~~~~~i-----------------~~SAT~~~---~~~~~~~--~~~~~----- 228 (404)
.+...+..+...++ +..+++ ++|||.+. .+...+. .++..
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYi 338 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYI 338 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEE
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccccee
Confidence 36678888888887 567777 78898764 2222111 11111
Q ss_pred ---CeEEEecC-----------------------------Cccc------------------------------------
Q 015595 229 ---PVKILVKR-----------------------------DELT------------------------------------ 240 (404)
Q Consensus 229 ---~~~~~~~~-----------------------------~~~~------------------------------------ 240 (404)
+..+.+.. +...
T Consensus 339 V~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l 418 (922)
T 1nkt_A 339 VRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL 418 (922)
T ss_dssp ECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred eecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC
Confidence 11111110 0000
Q ss_pred ----------cCCceEEEEEecCchhHHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHH
Q 015595 241 ----------LEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKE 308 (404)
Q Consensus 241 ----------~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 308 (404)
.....+..........|...+...+.. ..+.++||||+|++.++.+++.|+..|+++..+||+....+
T Consensus 419 ~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rE 498 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQE 498 (922)
T ss_dssp EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHH
T ss_pred CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHH
Confidence 000001011223344578777776653 24668999999999999999999999999999999976666
Q ss_pred HHHHHHHHhcCCCcEEEEcCccccCCCCCCC-------------------------------------------------
Q 015595 309 RDAIMGEFRSGTTRVLITTDVWARGLDVQQV------------------------------------------------- 339 (404)
Q Consensus 309 r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~------------------------------------------------- 339 (404)
+..+.+.|+.| .|+|||+++++|+|++..
T Consensus 499 a~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 576 (922)
T 1nkt_A 499 ATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIE 576 (922)
T ss_dssp HHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 65666667666 699999999999999975
Q ss_pred ---CEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHH
Q 015595 340 ---SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKI 381 (404)
Q Consensus 340 ---~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 381 (404)
.+||.++.|.|...|.|+.||+||.|.+|.+..|++.+|.-.
T Consensus 577 ~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 577 AGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp TTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred cCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 499999999999999999999999999999999999887643
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.2e-38 Score=296.47 Aligned_cols=286 Identities=15% Similarity=0.115 Sum_probs=206.9
Q ss_pred CCCCCcHHHHHhhhhhhcCCcE-EEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 52 GFEKPSAIQQRAVMPIIKGRDV-IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~-iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
|+.+++|.|+ +++.+++++++ ++++|||||||++++++++..+... +.+++|++|+++|+.|+.+.+.. .
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~g------~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALRG------L 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTT------S
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhcC------c
Confidence 5678999985 79999998877 8999999999999888887665443 35799999999999999988742 2
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc-CCCcccceEEeccccccccCcHHHHHHHH-hhCCCCceEE
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDEMLSRGFKDQIYDVY-RYLPPDLQVV 208 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~~~~~~~~~~~~~~~-~~~~~~~~~i 208 (404)
.+......... ....+..+.++|++.+.+.+.+. .+..++++|+||+|.+ +..+......+. ...+++.+++
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i 145 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAI 145 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEE
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEE
Confidence 22221111110 11234578899999887666543 5778899999999986 222222221121 1224578999
Q ss_pred EEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHH
Q 015595 209 LISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE 288 (404)
Q Consensus 209 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~ 288 (404)
+||||++...... ....+..+... ........ ... ...+.. ..+++||||++++.++.+++
T Consensus 146 ~~SAT~~~~~~~~---~~~~~~~~~~~-~~~p~~~~----------~~~----~~~l~~-~~~~~lVF~~s~~~a~~l~~ 206 (451)
T 2jlq_A 146 FMTATPPGSTDPF---PQSNSPIEDIE-REIPERSW----------NTG----FDWITD-YQGKTVWFVPSIKAGNDIAN 206 (451)
T ss_dssp EECSSCTTCCCSS---CCCSSCEEEEE-CCCCSSCC----------SSS----CHHHHH-CCSCEEEECSSHHHHHHHHH
T ss_pred EEccCCCccchhh---hcCCCceEecC-ccCCchhh----------HHH----HHHHHh-CCCCEEEEcCCHHHHHHHHH
Confidence 9999997743322 22222222221 11100000 001 122222 25689999999999999999
Q ss_pred HHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEcc--------------------CC
Q 015595 289 KMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYD--------------------LP 348 (404)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~--------------------~p 348 (404)
.|+..++.+..+|+++. +++++.|++|+.+|||||+++++|+|+|+ ++||+++ .|
T Consensus 207 ~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p 281 (451)
T 2jlq_A 207 CLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIP 281 (451)
T ss_dssp HHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEE
T ss_pred HHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeeccccc
Confidence 99999999999999753 57899999999999999999999999999 9999988 89
Q ss_pred CChhhhhhhccccCCCCC-ceeEEEEecc
Q 015595 349 NNRELYIHRIGRSGRFGR-KGVAINFVKN 376 (404)
Q Consensus 349 ~s~~~~~Q~~GR~~R~g~-~~~~~~~~~~ 376 (404)
.|..+|+||+||+||.|+ .|.+++++..
T Consensus 282 ~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 282 VTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 999999999999999998 7888888754
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=9.2e-40 Score=304.33 Aligned_cols=287 Identities=14% Similarity=0.146 Sum_probs=196.0
Q ss_pred hhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHH
Q 015595 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI 145 (404)
Q Consensus 66 ~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (404)
.+++++++++++|||||||++++++++..+... +.+++|++|+++|+.|+++.++.+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~----- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS----- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC-----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce-----
Confidence 467899999999999999999988888766544 357999999999999999888643 2221111100
Q ss_pred HHHhcCCCeEEeChH---------HHHHHHHc-cCCCcccceEEeccccccccCcHHHHHHHHhhC-CCCceEEEEeeec
Q 015595 146 RKLEHGVHVVSGTPG---------RVCDMIKR-KTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATL 214 (404)
Q Consensus 146 ~~~~~~~~iiv~T~~---------~l~~~l~~-~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~ 214 (404)
.++||+ .+...+.. ..+..++++|+||+|.+ +..+...+..+.... +.+.++++||||+
T Consensus 71 ---------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~ 140 (440)
T 1yks_A 71 ---------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATP 140 (440)
T ss_dssp ---------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred ---------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCC
Confidence 244443 33322222 24778899999999997 322222222222222 3578999999999
Q ss_pred chHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCC
Q 015595 215 PHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN 294 (404)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~ 294 (404)
++....+... ..+.... ....+... ....+..+.+ .+++++|||++++.++.+++.|+..+
T Consensus 141 ~~~~~~~~~~--~~~~~~~--------------~~~~~~~~-~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~ 201 (440)
T 1yks_A 141 PGTSDEFPHS--NGEIEDV--------------QTDIPSEP-WNTGHDWILA--DKRPTAWFLPSIRAANVMAASLRKAG 201 (440)
T ss_dssp TTCCCSSCCC--SSCEEEE--------------ECCCCSSC-CSSSCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTT
T ss_pred Cchhhhhhhc--CCCeeEe--------------eeccChHH-HHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHcC
Confidence 8764332211 1111110 00011110 1111122222 25799999999999999999999999
Q ss_pred CeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE-------------------ccCCCChhhhh
Q 015595 295 FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN-------------------YDLPNNRELYI 355 (404)
Q Consensus 295 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~-------------------~~~p~s~~~~~ 355 (404)
+.+..+|| .+|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|.
T Consensus 202 ~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~ 276 (440)
T 1yks_A 202 KSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAA 276 (440)
T ss_dssp CCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred CCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHH
Confidence 99999999 3578899999999999999999999999999 999986 88899999999
Q ss_pred hhccccCCC-CCceeEEEEe---ccCcHHHHHHHHHHHccccccCCcc
Q 015595 356 HRIGRSGRF-GRKGVAINFV---KNDDIKILRDIEQYYSTQIDEMPMN 399 (404)
Q Consensus 356 Q~~GR~~R~-g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (404)
||+||+||. |+.|.|++++ ++.+...+..++..+.....++|..
T Consensus 277 Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 324 (440)
T 1yks_A 277 QRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGG 324 (440)
T ss_dssp HHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGG
T ss_pred HhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccc
Confidence 999999998 6889999996 6778888888888775555555443
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.9e-38 Score=304.20 Aligned_cols=316 Identities=16% Similarity=0.157 Sum_probs=216.8
Q ss_pred HHHHCCCC-----CCcHHHH-----Hhhhhhh------cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEccc
Q 015595 47 GIYQYGFE-----KPSAIQQ-----RAVMPII------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (404)
Q Consensus 47 ~l~~~~~~-----~~~~~Q~-----~~~~~~~------~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (404)
++...||. .|++.|+ .+++.++ +++++++++|||||||++++++++..+... +.+++|++|+
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccH
Confidence 34445665 7999999 9999888 899999999999999999988888776543 3579999999
Q ss_pred HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHH-HccCCCcccceEEeccccccccC
Q 015595 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI-KRKTLRTRAIKLLDESDEMLSRG 189 (404)
Q Consensus 111 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l-~~~~~~~~~~vIiDE~h~~~~~~ 189 (404)
++|+.|+.+.++.+. +. ...+.... ....+.-+-+.+.+.+.+.+ ....+..++++|+||+|++ +..
T Consensus 280 r~La~Q~~~~l~~~~----i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~-~~~ 347 (673)
T 2wv9_A 280 RVVAAEMAEALRGLP----VR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFT-DPA 347 (673)
T ss_dssp HHHHHHHHHHTTTSC----CE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCC-CHH
T ss_pred HHHHHHHHHHHhcCC----ee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCccc-Ccc
Confidence 999999998886432 21 11110000 00111223344445444333 3336788999999999997 211
Q ss_pred cHHHHHHHHhhC-CCCceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcC
Q 015595 190 FKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 268 (404)
Q Consensus 190 ~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 268 (404)
+...+..+.... +...++++||||+++.+..+... ..+.... . ...+... ....+..+.+
T Consensus 348 ~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v-~-------------~~~~~~~-~~~~l~~l~~-- 408 (673)
T 2wv9_A 348 SIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDV-S-------------SEIPDRA-WSSGFEWITD-- 408 (673)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEE-E-------------CCCCSSC-CSSCCHHHHS--
T ss_pred HHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEE-e-------------eecCHHH-HHHHHHHHHh--
Confidence 112222222222 25789999999998653322111 1111110 0 0011110 1111222222
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE----
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN---- 344 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~---- 344 (404)
.++++||||++++.++.+++.|+..++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~ 483 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKS 483 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCc
Confidence 46799999999999999999999999999999994 788999999999999999999999999999 999997
Q ss_pred ----------------ccCCCChhhhhhhccccCCC-CCceeEEEEe---ccCcHHHHHHHHHHHccccccCCccc
Q 015595 345 ----------------YDLPNNRELYIHRIGRSGRF-GRKGVAINFV---KNDDIKILRDIEQYYSTQIDEMPMNV 400 (404)
Q Consensus 345 ----------------~~~p~s~~~~~Q~~GR~~R~-g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
++.|.|..+|.||+||+||. |+.|.+++++ ++.+...+..++..++....+++.++
T Consensus 484 ~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~~g~ 559 (673)
T 2wv9_A 484 VKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLPNGL 559 (673)
T ss_dssp CCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBTTTB
T ss_pred ccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCCchh
Confidence 56889999999999999999 7899999996 56777777777776644444444433
No 48
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.6e-37 Score=301.61 Aligned_cols=308 Identities=17% Similarity=0.219 Sum_probs=191.1
Q ss_pred CCcHHHHHhhhhhhc----C-CcEEEEcCCCCchhhHhHHHHHhhhhcC------CCceeEEEEcccHHHHHHHH-HHHH
Q 015595 55 KPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALILSPTRELATQTE-KVIL 122 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~-~~~iv~a~tGsGKT~~~~~~~~~~~~~~------~~~~~~lil~p~~~L~~q~~-~~~~ 122 (404)
.|+++|.++++.+++ + +++++++|||+|||++++..+...+..+ ..+.++||++|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999998876 4 6689999999999999766555544332 14568999999999999998 7676
Q ss_pred HHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHH------ccCCCcccceEEeccccccccCcHHHHHH
Q 015595 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK------RKTLRTRAIKLLDESDEMLSRGFKDQIYD 196 (404)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~------~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 196 (404)
.++ ..+..+.++. ...+.+|+|+|++.+..... ......++++|+||||++.... ...+..
T Consensus 258 ~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 554 2333333221 23458999999999987653 2234568999999999986542 234455
Q ss_pred HHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEE-----------------ecCCccccCCce--------------
Q 015595 197 VYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKIL-----------------VKRDELTLEGIK-------------- 245 (404)
Q Consensus 197 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~-------------- 245 (404)
++..++ ..++++|||||..........+++.+.... ............
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 666665 467999999987543322333333332221 110000000000
Q ss_pred EEEEEecCc------hhH----HHHHHhhhhc-CCCCeEEEEecchhhHHHHHHHHhhCCC--------eEEEecCCCCH
Q 015595 246 QFFVAVERE------EWK----FDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGYNF--------TVSSMHGDMPQ 306 (404)
Q Consensus 246 ~~~~~~~~~------~~~----~~~l~~~l~~-~~~~k~lIf~~~~~~~~~l~~~l~~~~~--------~~~~~~~~~~~ 306 (404)
......... ..+ ...+...++. ...+++||||+++++++.+++.|...+. .+..+||.++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~- 482 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG- 482 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-
Confidence 000000000 001 1223333333 3457999999999999999999977543 2778899875
Q ss_pred HHHHHHHHHHhcCCCc---EEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCC--ceeEEEEeccC
Q 015595 307 KERDAIMGEFRSGTTR---VLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR--KGVAINFVKND 377 (404)
Q Consensus 307 ~~r~~~~~~f~~~~~~---vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~--~~~~~~~~~~~ 377 (404)
++|+++++.|++++.. |+|+|+++++|+|+|++++||++++|.|...|.|++||++|.+. .+..+++++..
T Consensus 483 ~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 483 KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 3799999999998765 88899999999999999999999999999999999999999875 44444455544
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=9.4e-38 Score=297.57 Aligned_cols=292 Identities=19% Similarity=0.228 Sum_probs=213.8
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEE
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~ 134 (404)
.++++|+.+++.+.++++++++||||||||.++.++++.. +.+++|++|+++|+.|+.+.+.+.. +..+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeE
Confidence 5677888888888888999999999999999988877652 3469999999999999998876643 344555
Q ss_pred EEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccCcHHHHHHHHhhCCCCce--EEEE
Q 015595 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQ--VVLI 210 (404)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~--~i~~ 210 (404)
..|+.. ...+.+|+|+||++|. ... .+..++++||||+|. .+..+...+..+++.++...+ +++|
T Consensus 288 ~vG~~~-------~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp ECSSCE-------ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred EECcEe-------ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCceEEEE
Confidence 566543 2356899999999973 333 455689999999975 455566677778888876655 7888
Q ss_pred eeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHH
Q 015595 211 SATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM 290 (404)
Q Consensus 211 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l 290 (404)
|||++.... ...+......... ...... . ..... ++...++++||||++++.++.+++.|
T Consensus 357 SAT~~~~i~------~~~p~i~~v~~~~---~~~i~~---~-~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L 416 (666)
T 3o8b_A 357 TATPPGSVT------VPHPNIEEVALSN---TGEIPF---Y-GKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKL 416 (666)
T ss_dssp ESSCTTCCC------CCCTTEEEEECBS---CSSEEE---T-TEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCcccc------cCCcceEEEeecc---cchhHH---H-Hhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHH
Confidence 999987311 1111111110000 000000 0 00000 22336789999999999999999999
Q ss_pred hhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE----------cc-----------CCC
Q 015595 291 RGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN----------YD-----------LPN 349 (404)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~----------~~-----------~p~ 349 (404)
++.++.+..+||+++..+ |.++..+|||||+++++|+|+| +++||+ || .|.
T Consensus 417 ~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~ 488 (666)
T 3o8b_A 417 SGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQ 488 (666)
T ss_dssp HTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEEC
T ss_pred HhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcC
Confidence 999999999999998764 4556679999999999999997 999884 55 799
Q ss_pred ChhhhhhhccccCCCCCceeEEEEeccCcHHH--H--HHHHHHHccccccC
Q 015595 350 NRELYIHRIGRSGRFGRKGVAINFVKNDDIKI--L--RDIEQYYSTQIDEM 396 (404)
Q Consensus 350 s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~ 396 (404)
|..+|+||+||+|| |+.|. +.|+.+.+... + ..+.+.++....++
T Consensus 489 s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~ 537 (666)
T 3o8b_A 489 DAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWY 537 (666)
T ss_dssp BHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCcccc
Confidence 99999999999999 88999 89988876544 3 45555555444443
No 50
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.6e-36 Score=306.78 Aligned_cols=333 Identities=16% Similarity=0.149 Sum_probs=227.3
Q ss_pred CCcHHHHHhhhhhhcC--CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeE
Q 015595 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~ 132 (404)
.|+|||.+++..++.. .+++++++||+|||.+++..+...+..+. ..++||+||+ +|+.||..++.+.. ++.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-AERVLIIVPE-TLQHQWLVEMLRRF---NLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-CCCEEEECCT-TTHHHHHHHHHHHS---CCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEeCH-HHHHHHHHHHHHHh---CCCE
Confidence 7999999999988864 47899999999999998887776665443 3469999999 99999999997654 4555
Q ss_pred EEEEcCcchHHHHH--HHhcCCCeEEeChHHHHHHHHc---cCCCcccceEEeccccccccCcH--HHHHHHHhhCCCCc
Q 015595 133 HACVGGKSVGEDIR--KLEHGVHVVSGTPGRVCDMIKR---KTLRTRAIKLLDESDEMLSRGFK--DQIYDVYRYLPPDL 205 (404)
Q Consensus 133 ~~~~~~~~~~~~~~--~~~~~~~iiv~T~~~l~~~l~~---~~~~~~~~vIiDE~h~~~~~~~~--~~~~~~~~~~~~~~ 205 (404)
..+.++........ ......+|+|+|++.+...... .....++++|+||+|++.+.... .....+.....+..
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~ 307 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVP 307 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCS
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCC
Confidence 44444332211100 1112478999999888542111 12346799999999999765422 11222222222456
Q ss_pred eEEEEeeecch----HHHHHH----------------------------HhccCC-C-----------------------
Q 015595 206 QVVLISATLPH----EILEMT----------------------------TKFMTD-P----------------------- 229 (404)
Q Consensus 206 ~~i~~SAT~~~----~~~~~~----------------------------~~~~~~-~----------------------- 229 (404)
++++|||||.+ ++..++ ...... +
T Consensus 308 ~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~ 387 (968)
T 3dmq_A 308 GVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQ 387 (968)
T ss_dssp SEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGG
T ss_pred cEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHh
Confidence 79999999842 011100 000000 0
Q ss_pred ----------------------------eEEEecCC---ccccCCceEEEE-----------------------------
Q 015595 230 ----------------------------VKILVKRD---ELTLEGIKQFFV----------------------------- 249 (404)
Q Consensus 230 ----------------------------~~~~~~~~---~~~~~~~~~~~~----------------------------- 249 (404)
..+..... ............
T Consensus 388 ~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (968)
T 3dmq_A 388 AANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDM 467 (968)
T ss_dssp GTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhh
Confidence 00000000 000000001100
Q ss_pred ---------------EecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhh-CCCeEEEecCCCCHHHHHHHH
Q 015595 250 ---------------AVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRG-YNFTVSSMHGDMPQKERDAIM 313 (404)
Q Consensus 250 ---------------~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~ 313 (404)
.......|...+..++....++++||||++...++.+++.|.. .++.+..+||+++..+|..++
T Consensus 468 l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l 547 (968)
T 3dmq_A 468 LYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAA 547 (968)
T ss_dssp HCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHH
T ss_pred cChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 0112234788888888887889999999999999999999995 599999999999999999999
Q ss_pred HHHhcCC--CcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHcc
Q 015595 314 GEFRSGT--TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYST 391 (404)
Q Consensus 314 ~~f~~~~--~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (404)
+.|++|+ .+|||||+++++|+|+|++++||++++|+++..|.|++||++|.|+.+.++++....+...-..+.+.+.+
T Consensus 548 ~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~ 627 (968)
T 3dmq_A 548 AWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHE 627 (968)
T ss_dssp HHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHH
T ss_pred HHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHh
Confidence 9999998 99999999999999999999999999999999999999999999998865555433222222445555533
Q ss_pred c
Q 015595 392 Q 392 (404)
Q Consensus 392 ~ 392 (404)
.
T Consensus 628 k 628 (968)
T 3dmq_A 628 G 628 (968)
T ss_dssp T
T ss_pred C
Confidence 3
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5.5e-37 Score=287.41 Aligned_cols=275 Identities=15% Similarity=0.150 Sum_probs=190.4
Q ss_pred hhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHH
Q 015595 64 VMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGE 143 (404)
Q Consensus 64 ~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (404)
-..+.+++++++++|||||||++++++++..+... +.++||++|+++|+.|+.+.+.. ..+....+....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~-- 84 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAVQR-- 84 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTTT------SCEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhcC------ceEeEEeccccc--
Confidence 34456688999999999999999999888766543 35799999999999999988862 222221111110
Q ss_pred HHHHHhcCCCeEEeChHHHHHHHHc-cCCCcccceEEeccccccccC-cH-HHHHHHHhhCCCCceEEEEeeecchHHHH
Q 015595 144 DIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLDESDEMLSRG-FK-DQIYDVYRYLPPDLQVVLISATLPHEILE 220 (404)
Q Consensus 144 ~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~vIiDE~h~~~~~~-~~-~~~~~~~~~~~~~~~~i~~SAT~~~~~~~ 220 (404)
....+..+.++|.+.+...+.. ..+..++++|+||+|...... .. ..+.... .++..|+++||||++.....
T Consensus 85 ---~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~--~~~~~~~il~SAT~~~~~~~ 159 (459)
T 2z83_A 85 ---EHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKV--ELGEAAAIFMTATPPGTTDP 159 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH--HTTSCEEEEECSSCTTCCCS
T ss_pred ---CCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHh--ccCCccEEEEEcCCCcchhh
Confidence 0123345667888777655544 357889999999999842110 00 0111111 13578999999999875322
Q ss_pred HHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEe
Q 015595 221 MTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSM 300 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~ 300 (404)
+... ..|..... ..... ........ ++.. .++++||||++++.++.+++.|+..++.+..+
T Consensus 160 ~~~~--~~pi~~~~--~~~~~----------~~~~~~~~----~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~l 220 (459)
T 2z83_A 160 FPDS--NAPIHDLQ--DEIPD----------RAWSSGYE----WITE-YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQL 220 (459)
T ss_dssp SCCC--SSCEEEEE--CCCCS----------SCCSSCCH----HHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred hccC--CCCeEEec--ccCCc----------chhHHHHH----HHHh-cCCCEEEEeCChHHHHHHHHHHHhcCCcEEec
Confidence 2111 22222211 00000 00011112 2222 26789999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEE--------------------ccCCCChhhhhhhccc
Q 015595 301 HGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVIN--------------------YDLPNNRELYIHRIGR 360 (404)
Q Consensus 301 ~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~--------------------~~~p~s~~~~~Q~~GR 360 (404)
|++ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ ++.|.|..+|+||+||
T Consensus 221 h~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GR 295 (459)
T 2z83_A 221 NRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGR 295 (459)
T ss_dssp STT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTT
T ss_pred CHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccc
Confidence 985 6778899999999999999999999999999 99998 6699999999999999
Q ss_pred cCCCCC-ceeEEEEeccC
Q 015595 361 SGRFGR-KGVAINFVKND 377 (404)
Q Consensus 361 ~~R~g~-~~~~~~~~~~~ 377 (404)
+||.|+ .|.+++++.+.
T Consensus 296 aGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 296 VGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SSCCTTCCCEEEEECSCC
T ss_pred cCCCCCCCCeEEEEEccc
Confidence 999997 89999999875
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=4.2e-36 Score=279.17 Aligned_cols=268 Identities=13% Similarity=0.112 Sum_probs=184.8
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (404)
+++++++++|||||||++++++++..+... +.+++|++|+++|+.|+.+.+. +..+....++... ..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cC
Confidence 367899999999999999988888554433 3479999999999999887775 3344444433211 11
Q ss_pred hcCCCeEEeChHHHHHHHHc-cCCCcccceEEeccccccccCcHHHHHHHHhh-CCCCceEEEEeeecchHHHHHHHhcc
Q 015595 149 EHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLDESDEMLSRGFKDQIYDVYRY-LPPDLQVVLISATLPHEILEMTTKFM 226 (404)
Q Consensus 149 ~~~~~iiv~T~~~l~~~l~~-~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~~~~~~~ 226 (404)
..+..+.+.|.+.+.+.+.. ..+..++++|+||+|++ ...+......+... .+..+++++||||+++....+...
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~-- 144 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS-- 144 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC--
T ss_pred CCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC--
Confidence 12355667787777654443 35788999999999997 32222222222222 146789999999998743221110
Q ss_pred CCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCH
Q 015595 227 TDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 306 (404)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 306 (404)
..+.. .... ..+.. ....+...+.. .+++++|||+++++++.+++.|+..++.+..+||+
T Consensus 145 ~~~i~-~~~~-------------~~~~~--~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~--- 204 (431)
T 2v6i_A 145 NSPII-DEET-------------RIPDK--AWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK--- 204 (431)
T ss_dssp SSCCE-EEEC-------------CCCSS--CCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT---
T ss_pred CCcee-eccc-------------cCCHH--HHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc---
Confidence 11111 0000 00110 11112223333 25689999999999999999999999999999997
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCE-----------------EEEccCCCChhhhhhhccccCCCCCc-e
Q 015595 307 KERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSL-----------------VINYDLPNNRELYIHRIGRSGRFGRK-G 368 (404)
Q Consensus 307 ~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~-----------------vi~~~~p~s~~~~~Q~~GR~~R~g~~-~ 368 (404)
+|+++++.|++|+.+|||||+++++|+|+| +.+ +++++.|.+..+|.||+||+||.|.. +
T Consensus 205 -~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~ 282 (431)
T 2v6i_A 205 -TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLG 282 (431)
T ss_dssp -THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred -cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCC
Confidence 577899999999999999999999999999 655 56788899999999999999999854 5
Q ss_pred eEEEEe
Q 015595 369 VAINFV 374 (404)
Q Consensus 369 ~~~~~~ 374 (404)
.++++.
T Consensus 283 ~~~~~~ 288 (431)
T 2v6i_A 283 DIYAYS 288 (431)
T ss_dssp CEEEEC
T ss_pred eEEEEc
Confidence 555554
No 53
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.6e-35 Score=253.59 Aligned_cols=215 Identities=29% Similarity=0.463 Sum_probs=193.6
Q ss_pred eeccCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC----
Q 015595 23 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---- 98 (404)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~---- 98 (404)
......+++..+|+++++++.+.+++.+.||..|+++|.++++.+++++++++++|||+|||++++++++..+...
T Consensus 19 ~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~ 98 (242)
T 3fe2_A 19 VRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 98 (242)
T ss_dssp EESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCC
T ss_pred EeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccc
Confidence 3445567788999999999999999999999999999999999999999999999999999999999998877542
Q ss_pred -CCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCccc
Q 015595 99 -SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRA 175 (404)
Q Consensus 99 -~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~ 175 (404)
..++++||++|+++|+.|+.+.++++....++.+..+.|+.........+..+++|+|+||+++.+++... .+..++
T Consensus 99 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 178 (242)
T 3fe2_A 99 RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTT 178 (242)
T ss_dssp TTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCC
T ss_pred cCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCccccc
Confidence 34667999999999999999999999888889999999999888887778888999999999999988765 467789
Q ss_pred ceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCC
Q 015595 176 IKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 237 (404)
Q Consensus 176 ~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 237 (404)
++|+||+|.+.+.++...+..+++.+++..|++++|||+++.+..+...++.+|..+.+...
T Consensus 179 ~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 179 YLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp EEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999988877544
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.2e-34 Score=276.50 Aligned_cols=312 Identities=13% Similarity=0.146 Sum_probs=214.5
Q ss_pred CCcHHHHHhhhhhh----cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|+|||.++++.+. .+++.++.++||+|||.+++..+..... .....++||+|| .+|+.||.++++++... .
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~--~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICP-LSVLKNWEEELSKFAPH--L 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEEC-STTHHHHHHHHHHHCTT--S
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCCCCEEEEcc-HHHHHHHHHHHHHHCCC--c
Confidence 69999999988763 4678999999999999987765555443 333456999999 56999999999998643 4
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEE
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 210 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 210 (404)
.+..++|+... ......+|+|+|++.+..... .....++++|+||+|++.+... .....+..++ ..+.+++
T Consensus 113 ~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~-~~~~l~L 183 (500)
T 1z63_A 113 RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-SKYRIAL 183 (500)
T ss_dssp CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-EEEEEEE
T ss_pred eEEEEecCchh-----ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-cCcEEEE
Confidence 55555554421 112357999999998875433 1223568999999999876542 2334444443 4678999
Q ss_pred eeecchH-HHHH---H---------------------------------HhccCCCeEEEecCCc----cccCCceEEEE
Q 015595 211 SATLPHE-ILEM---T---------------------------------TKFMTDPVKILVKRDE----LTLEGIKQFFV 249 (404)
Q Consensus 211 SAT~~~~-~~~~---~---------------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 249 (404)
||||..+ ..++ + ...+ .+..+...... ...+.......
T Consensus 184 TaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~~~~~v 262 (500)
T 1z63_A 184 TGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPDKIETNV 262 (500)
T ss_dssp CSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCSEEEEEE
T ss_pred ecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCCCeEEEE
Confidence 9998432 1111 0 0111 12211111110 01111111212
Q ss_pred EecC--------------------------------------------------------chhHHHHHHhhhhcC--CCC
Q 015595 250 AVER--------------------------------------------------------EEWKFDTLCDLYDTL--TIT 271 (404)
Q Consensus 250 ~~~~--------------------------------------------------------~~~~~~~l~~~l~~~--~~~ 271 (404)
.++. ...|...+.+++... .+.
T Consensus 263 ~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~ 342 (500)
T 1z63_A 263 YCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGD 342 (500)
T ss_dssp EECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTC
T ss_pred EcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCC
Confidence 2211 112344444445432 567
Q ss_pred eEEEEecchhhHHHHHHHHhhC-CCeEEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEcCccccCCCCCCCCEEEEccCC
Q 015595 272 QAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFRSG-TTR-VLITTDVWARGLDVQQVSLVINYDLP 348 (404)
Q Consensus 272 k~lIf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vlv~t~~~~~Gid~p~~~~vi~~~~p 348 (404)
++||||++...++.+++.|... ++.+..+||+++..+|.++++.|+++ ... +|++|+++++|+|+|.+++||++++|
T Consensus 343 k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~ 422 (500)
T 1z63_A 343 KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRW 422 (500)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCC
T ss_pred cEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCC
Confidence 9999999999999999999885 88999999999999999999999988 454 78899999999999999999999999
Q ss_pred CChhhhhhhccccCCCCCcee--EEEEeccCcHH
Q 015595 349 NNRELYIHRIGRSGRFGRKGV--AINFVKNDDIK 380 (404)
Q Consensus 349 ~s~~~~~Q~~GR~~R~g~~~~--~~~~~~~~~~~ 380 (404)
+|+..|.|++||++|.|+.+. ++.++..+..+
T Consensus 423 ~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 423 WNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp SCC---CHHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred CCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 999999999999999998754 46667766554
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=249.89 Aligned_cols=206 Identities=31% Similarity=0.521 Sum_probs=187.4
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
.++..+|+++++++.+.+++..+||..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.++||++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~ 118 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLT 118 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEEC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEe
Confidence 45567899999999999999999999999999999999999999999999999999999999998887776677899999
Q ss_pred ccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEeccccc
Q 015595 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDESDEM 185 (404)
Q Consensus 109 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE~h~~ 185 (404)
|+++|+.|+.+.++++....++.+..+.|+.........+..+++|+|+||+++.+.+... .+..++++|+||+|++
T Consensus 119 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 198 (249)
T 3ber_A 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI 198 (249)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhh
Confidence 9999999999999999888889999999998877777777788999999999999988753 4677899999999999
Q ss_pred cccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEe
Q 015595 186 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 234 (404)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 234 (404)
.+.++...+..++..+++..|++++|||+++.+..+...++.+|..+.+
T Consensus 199 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 199 LNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999889999999999999999999999999887654
No 56
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=6.6e-35 Score=250.14 Aligned_cols=210 Identities=56% Similarity=0.931 Sum_probs=174.9
Q ss_pred ccCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeE
Q 015595 25 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA 104 (404)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~ 104 (404)
.+..+++..+|+++++++.+.+++...||..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.++
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~ 101 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQA 101 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCE
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceE
Confidence 34455677889999999999999999999999999999999999999999999999999999999999888766566789
Q ss_pred EEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcC-CCeEEeChHHHHHHHHcc--CCCcccceEEec
Q 015595 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG-VHVVSGTPGRVCDMIKRK--TLRTRAIKLLDE 181 (404)
Q Consensus 105 lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE 181 (404)
||++|+++|+.|+.+.++++....+..+..+.|+.........+..+ ++|+|+||+++.+++... .+..++++|+||
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDE 181 (237)
T 3bor_A 102 LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 181 (237)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEES
T ss_pred EEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECC
Confidence 99999999999999999999887788888888887766655555544 899999999999988765 456789999999
Q ss_pred cccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEe
Q 015595 182 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 234 (404)
Q Consensus 182 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 234 (404)
+|.+.+.++...+..+++.++...|++++|||+++++..+...++.+|..+.+
T Consensus 182 ah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 182 ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred chHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 99999888899999999999889999999999999999999999998877654
No 57
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-34 Score=241.07 Aligned_cols=200 Identities=34% Similarity=0.625 Sum_probs=181.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
.+|+++++++.+.+++.++||..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.+++|++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999988776666678999999999
Q ss_pred HHHHHHHHHHHHcccc-CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccccC
Q 015595 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSRG 189 (404)
Q Consensus 113 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~~ 189 (404)
|+.|+.+.++++.... +..+..+.|+............+++|+|+||+++.+.+.+. .+..++++|+||+|.+.+..
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 9999999999987766 78888889888877777777778999999999999988765 46678999999999999888
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEE
Q 015595 190 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKI 232 (404)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 232 (404)
+...+..+...+++..|++++|||+++....++..++.+|..+
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999998899999999999999999999999888654
No 58
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.5e-34 Score=244.84 Aligned_cols=210 Identities=54% Similarity=0.890 Sum_probs=177.6
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEE
Q 015595 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (404)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~li 106 (404)
.-++...+|+++++++.+.+.+...||..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.+++|
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~li 87 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALM 87 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEE
Confidence 33456678999999999999999999999999999999999999999999999999999999999988877666778999
Q ss_pred EcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEecccc
Q 015595 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDE 184 (404)
Q Consensus 107 l~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~ 184 (404)
++|+++|+.|+.+.++++....++.+..+.|+.........+. .++|+|+||+++...+.+. .+..++++|+||+|+
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 88 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 166 (224)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred EECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH
Confidence 9999999999999999998888888888888877655544443 3899999999999888765 456789999999999
Q ss_pred ccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEecCC
Q 015595 185 MLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 237 (404)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 237 (404)
+.+.++...+..+...+++..|++++|||+++++..+...++.+|..+.+..+
T Consensus 167 ~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 167 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred HhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99888999999999999889999999999999999999999999887765543
No 59
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.5e-34 Score=249.37 Aligned_cols=217 Identities=30% Similarity=0.495 Sum_probs=183.2
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCC---------C
Q 015595 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---------R 100 (404)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~---------~ 100 (404)
++..+|+++++++.+.+++...||..|+++|.++++.+++++++++++|||+|||++++++++..+.... .
T Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 20 NVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp SCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 3677899999999999999999999999999999999999999999999999999999999988775432 2
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceE
Q 015595 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKL 178 (404)
Q Consensus 101 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vI 178 (404)
++++||++|+++|+.|+.+.++++....++.+..+.|+.........+..+++|+|+||+++.+++... .+..++++|
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 358999999999999999999999888888888999998877777777788999999999999998775 456788999
Q ss_pred EeccccccccCcHHHHHHHHhhC--CC--CceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceE
Q 015595 179 LDESDEMLSRGFKDQIYDVYRYL--PP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQ 246 (404)
Q Consensus 179 iDE~h~~~~~~~~~~~~~~~~~~--~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (404)
+||+|++.+.++...+..++..+ +. ..|++++|||+++++..+...++.+|..+..........++.+
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q 251 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCcee
Confidence 99999999999999999998853 43 6789999999999999999999999988877665555444444
No 60
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.9e-34 Score=244.57 Aligned_cols=204 Identities=34% Similarity=0.551 Sum_probs=180.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccH
Q 015595 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (404)
..+|+++++++.+.+++.+.|+..|+++|.++++.+++++++++++|||+|||++++++++..+.....+.+++|++|++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 35799999999999999999999999999999999999999999999999999999999998887666667899999999
Q ss_pred HHHHHHHHHHHHHcccc----CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEeccccc
Q 015595 112 ELATQTEKVILAIGDFI----NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEM 185 (404)
Q Consensus 112 ~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~ 185 (404)
+|+.|+.+.++++.... +..+..+.|+.........+..+++|+|+||+++.+.+... .+..++++|+||+|.+
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 99999999999987665 67788888887665544444457899999999999988765 4567899999999999
Q ss_pred cccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEec
Q 015595 186 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 235 (404)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 235 (404)
.+.++...+..+...+++..|++++|||+++++.+++..++.+|..+...
T Consensus 163 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 163 LDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp HHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred hhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 99889999999999998899999999999999999999999999876543
No 61
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=244.42 Aligned_cols=208 Identities=30% Similarity=0.464 Sum_probs=179.3
Q ss_pred ccCCccccccccc-CCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC-----
Q 015595 25 TTEGVEAITSFDA-MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----- 98 (404)
Q Consensus 25 ~~~~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~----- 98 (404)
....+++..+|++ +++++.+.+++.+.||..|+++|.++++.+++++++++.+|||+|||++++++++..+...
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 3455677888999 7999999999999999999999999999999999999999999999999999988776432
Q ss_pred -CCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCccc
Q 015595 99 -SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRA 175 (404)
Q Consensus 99 -~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~ 175 (404)
..+.++||++|+++|+.|+.+.++++. ..+..+..+.|+.........+..+++|+|+||+++.+++... .+..++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 245679999999999999999999986 4577888888888877777777888999999999999988765 366789
Q ss_pred ceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEE
Q 015595 176 IKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKIL 233 (404)
Q Consensus 176 ~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 233 (404)
++|+||+|++.+.++...+..++..++++.|++++|||+++....+...++.+|..+.
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999999887664
No 62
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.1e-33 Score=241.38 Aligned_cols=205 Identities=34% Similarity=0.547 Sum_probs=177.5
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEE
Q 015595 28 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (404)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (404)
.+.+..+|+++++++.+.+++.+.||..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.++||+
T Consensus 19 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil 98 (230)
T 2oxc_A 19 LLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILIL 98 (230)
T ss_dssp -----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999998887666666789999
Q ss_pred cccHHHHHHHHHHHHHHcccc-CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEecccc
Q 015595 108 SPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDE 184 (404)
Q Consensus 108 ~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~ 184 (404)
+|+++|+.|+.+.++++.... ++.+..+.|+.........+ .+++|+|+||+++.+++... .+..++++|+||+|+
T Consensus 99 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 177 (230)
T 2oxc_A 99 APTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK 177 (230)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH
T ss_pred eCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH
Confidence 999999999999999987654 78888888888765554443 46899999999999988765 356778999999999
Q ss_pred ccccC-cHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEE
Q 015595 185 MLSRG-FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKIL 233 (404)
Q Consensus 185 ~~~~~-~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 233 (404)
+.+.+ +...+..+++.++...|++++|||+++++..++..++.+|..+.
T Consensus 178 ~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 178 LLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp HHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred hhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 98886 89999999999988999999999999999999999998887654
No 63
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.8e-32 Score=265.58 Aligned_cols=321 Identities=16% Similarity=0.137 Sum_probs=220.3
Q ss_pred CCcHHHHHhhhhhh---------cCCcEEEEcCCCCchhhHhHHHHHhhhhcCC----CceeEEEEcccHHHHHHHHHHH
Q 015595 55 KPSAIQQRAVMPII---------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQALILSPTRELATQTEKVI 121 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~---------~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~----~~~~~lil~p~~~L~~q~~~~~ 121 (404)
.|+|||.+++..+. .+++.|+..+||+|||+.++..+...+.... ...++|||||+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999998874 3467899999999999988877766654432 23469999996 8999999999
Q ss_pred HHHccccCeeEEEEEcCcchHH--HHHHHhc------CCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHH
Q 015595 122 LAIGDFINIQAHACVGGKSVGE--DIRKLEH------GVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQ 193 (404)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~ 193 (404)
.++... .+.+..+.++..... ....... ..+|+|+|++.+...........++++|+||+|++.+.. ...
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~-~~~ 211 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSD-NQT 211 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTC-HHH
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChh-hHH
Confidence 998644 455556666543321 1122211 378999999999876554444577899999999987654 222
Q ss_pred HHHHHhhCCCCceEEEEeeecchHH----HH---------------HHHhcc----------------------------
Q 015595 194 IYDVYRYLPPDLQVVLISATLPHEI----LE---------------MTTKFM---------------------------- 226 (404)
Q Consensus 194 ~~~~~~~~~~~~~~i~~SAT~~~~~----~~---------------~~~~~~---------------------------- 226 (404)
...+ ..+ ...+.+++||||-.+- .. +...+.
T Consensus 212 ~~al-~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~ 289 (644)
T 1z3i_X 212 YLAL-NSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELIS 289 (644)
T ss_dssp HHHH-HHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHH-Hhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHH
Confidence 2222 233 3557899999984320 00 000000
Q ss_pred -CCCeEEEecCCcc--ccCCceEEEEEec---------------------------------------------------
Q 015595 227 -TDPVKILVKRDEL--TLEGIKQFFVAVE--------------------------------------------------- 252 (404)
Q Consensus 227 -~~~~~~~~~~~~~--~~~~~~~~~~~~~--------------------------------------------------- 252 (404)
..|..+....... ..+........+.
T Consensus 290 ~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~ 369 (644)
T 1z3i_X 290 IVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEK 369 (644)
T ss_dssp HHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHH
T ss_pred HHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHH
Confidence 0000000000000 0000001111100
Q ss_pred --------------------------CchhHHHHHHhhhhc---CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCC
Q 015595 253 --------------------------REEWKFDTLCDLYDT---LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGD 303 (404)
Q Consensus 253 --------------------------~~~~~~~~l~~~l~~---~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 303 (404)
....|...+..++.. ..+.|+||||++...++.+...|...++.+..+||+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~ 449 (644)
T 1z3i_X 370 CLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGT 449 (644)
T ss_dssp HHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSS
T ss_pred HhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 011233344444432 356899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCC---cEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCce--eEEEEeccCc
Q 015595 304 MPQKERDAIMGEFRSGTT---RVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKNDD 378 (404)
Q Consensus 304 ~~~~~r~~~~~~f~~~~~---~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~--~~~~~~~~~~ 378 (404)
++..+|.++++.|+++.. .+|++|.++++|+|++++++||++++|+|+..+.|++||++|.|+.. .++.++..+.
T Consensus 450 ~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 450 MSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp CCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred CCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 999999999999998865 47899999999999999999999999999999999999999999874 5566777764
Q ss_pred HH
Q 015595 379 IK 380 (404)
Q Consensus 379 ~~ 380 (404)
..
T Consensus 530 iE 531 (644)
T 1z3i_X 530 IE 531 (644)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 64
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-33 Score=278.66 Aligned_cols=327 Identities=17% Similarity=0.222 Sum_probs=229.8
Q ss_pred CCcHHHHHhhhhhh----cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
+|+|||.+++..+. .+++.++..+||+|||++++..+...+.......++||||| .+++.||.+++.++.. +.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 68999999998665 67899999999999999888777666544444456999999 7889999999998763 45
Q ss_pred eEEEEEcCcchHHHHHHH------------hcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHH
Q 015595 131 QAHACVGGKSVGEDIRKL------------EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVY 198 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~------------~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~ 198 (404)
.+...+|+.......... ....+|+|+|++.+...........++++|+||+|++.+.. ......+
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~--s~~~~~l 390 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAE--SSLYESL 390 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSS--SHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCch--hHHHHHH
Confidence 666666666544433322 13478999999999865544334467899999999986654 2334444
Q ss_pred hhCCCCceEEEEeeecch----HHHHHHHhcc-----------------------------CCCeEEEecCCccc--cCC
Q 015595 199 RYLPPDLQVVLISATLPH----EILEMTTKFM-----------------------------TDPVKILVKRDELT--LEG 243 (404)
Q Consensus 199 ~~~~~~~~~i~~SAT~~~----~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~--~~~ 243 (404)
..++ ....+++||||.. ++..++.-.. ..|..+........ .+.
T Consensus 391 ~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~ 469 (800)
T 3mwy_W 391 NSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPS 469 (800)
T ss_dssp TTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCC
T ss_pred HHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCC
Confidence 4443 4567999999831 1111111100 01111111000000 111
Q ss_pred ceEEEEEecC----------------------------------------------------------------------
Q 015595 244 IKQFFVAVER---------------------------------------------------------------------- 253 (404)
Q Consensus 244 ~~~~~~~~~~---------------------------------------------------------------------- 253 (404)
.......+..
T Consensus 470 k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~ 549 (800)
T 3mwy_W 470 KTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLR 549 (800)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHH
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHH
Confidence 1111111100
Q ss_pred ----chhHHHHHHhhhhcC--CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCC---cEE
Q 015595 254 ----EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTT---RVL 324 (404)
Q Consensus 254 ----~~~~~~~l~~~l~~~--~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vl 324 (404)
...|...+..++... .+.++||||.....++.+...|...++.+..+||+++..+|..+++.|+++.. .+|
T Consensus 550 ~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~L 629 (800)
T 3mwy_W 550 GLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFL 629 (800)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEE
T ss_pred HhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEE
Confidence 122455555565543 45799999999999999999999999999999999999999999999998654 489
Q ss_pred EEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCc--eeEEEEeccCcH--HHHHHHHH
Q 015595 325 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK--GVAINFVKNDDI--KILRDIEQ 387 (404)
Q Consensus 325 v~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~~~--~~~~~~~~ 387 (404)
++|.+++.|+|++.+++||++++++|+..+.|++||++|.|+. ..++.++..+.+ ..+....+
T Consensus 630 lSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 630 LSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARK 696 (800)
T ss_dssp EEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred EecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 455667777743 44443333
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=7.2e-34 Score=274.21 Aligned_cols=282 Identities=17% Similarity=0.235 Sum_probs=205.2
Q ss_pred hhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHH
Q 015595 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI 145 (404)
Q Consensus 66 ~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (404)
..+++++++++||||||||..++..+. ..+. .+|++|+++|+.|+++.+++. ++.+..++|+......
T Consensus 151 r~l~rk~vlv~apTGSGKT~~al~~l~----~~~~---gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~- 218 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHAIQKYF----SAKS---GVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ- 218 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHHHHHH----HSSS---EEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS-
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHH----hcCC---eEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec-
Confidence 345788999999999999984443332 2332 599999999999999999875 5778888887654100
Q ss_pred HHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCC-CCceEEEEeeecchHHHHHHHh
Q 015595 146 RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISATLPHEILEMTTK 224 (404)
Q Consensus 146 ~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~~SAT~~~~~~~~~~~ 224 (404)
.-....+++++|++.+. ....++++|+||+|.+.+..+...+..++..++ ...+++++|||.+ ....+..
T Consensus 219 -TpGr~~~il~~T~e~~~------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~i~~l~~- 289 (677)
T 3rc3_A 219 -PNGKQASHVSCTVEMCS------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID-LVMELMY- 289 (677)
T ss_dssp -TTCCCCSEEEEEGGGCC------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-HHHHHHH-
T ss_pred -CCCcccceeEecHhHhh------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-HHHHHHH-
Confidence 00112678888875543 345679999999999988888888888888777 6788999999953 2333332
Q ss_pred ccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCC
Q 015595 225 FMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDM 304 (404)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 304 (404)
..+....+....... ... .... . + ..+.... ...+|||++++.++.+++.|.+.++.+..+||++
T Consensus 290 ~~~~~~~v~~~~r~~---~l~-----~~~~--~---l-~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L 354 (677)
T 3rc3_A 290 TTGEEVEVRDYKRLT---PIS-----VLDH--A---L-ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSL 354 (677)
T ss_dssp HHTCCEEEEECCCSS---CEE-----ECSS--C---C-CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTS
T ss_pred hcCCceEEEEeeecc---hHH-----HHHH--H---H-HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccC
Confidence 233444332211110 000 0000 0 0 1122222 3458889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhc--CCCcEEEEcCccccCCCCCCCCEEEEccC--------------CCChhhhhhhccccCCCCCc-
Q 015595 305 PQKERDAIMGEFRS--GTTRVLITTDVWARGLDVQQVSLVINYDL--------------PNNRELYIHRIGRSGRFGRK- 367 (404)
Q Consensus 305 ~~~~r~~~~~~f~~--~~~~vlv~t~~~~~Gid~p~~~~vi~~~~--------------p~s~~~~~Q~~GR~~R~g~~- 367 (404)
+..+|.++++.|++ |..+|||||+++++|+|+ ++++||+++. |.|..+|.||+||+||.|+.
T Consensus 355 ~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g 433 (677)
T 3rc3_A 355 PPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRF 433 (677)
T ss_dssp CHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSC
T ss_pred CHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCC
Confidence 99999999999998 889999999999999999 8999999998 77999999999999999864
Q ss_pred --eeEEEEeccCcHHHHHHH
Q 015595 368 --GVAINFVKNDDIKILRDI 385 (404)
Q Consensus 368 --~~~~~~~~~~~~~~~~~~ 385 (404)
|.|+.++.+ +...++.+
T Consensus 434 ~~G~v~~l~~~-d~~~~~~~ 452 (677)
T 3rc3_A 434 KEGEVTTMNHE-DLSLLKEI 452 (677)
T ss_dssp SSEEEEESSTT-HHHHHHHH
T ss_pred CCEEEEEEecc-hHHHHHHH
Confidence 666666444 44433333
No 66
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=238.78 Aligned_cols=206 Identities=27% Similarity=0.470 Sum_probs=179.7
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC----CCceeE
Q 015595 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQA 104 (404)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~----~~~~~~ 104 (404)
.++..+|+++++++.+.+.+.+.|+..|+++|.++++.+++++++++.+|||+|||++++++++..+... ..+.++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 4556789999999999999999999999999999999999999999999999999999999988776432 234679
Q ss_pred EEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEec
Q 015595 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDE 181 (404)
Q Consensus 105 lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE 181 (404)
||++|+++|+.|+.+.+++++...++.+..++|+.......... .+++|+|+||+++.+.+... .+..++++|+||
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 99999999999999999999888888898899888766555444 46899999999999888754 356788999999
Q ss_pred cccccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEec
Q 015595 182 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 235 (404)
Q Consensus 182 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 235 (404)
+|++.+.++...+..++..+++..|++++|||+++.+..+...++.+|..+.+.
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999988877653
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=6.2e-33 Score=233.34 Aligned_cols=199 Identities=35% Similarity=0.583 Sum_probs=176.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC---CCceeEEEEccc
Q 015595 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPT 110 (404)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~p~ 110 (404)
+|+++++++.+.+.+.+.|+..|+++|.++++.+++++++++.+|||+|||++++++++..+... ..+.+++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999998877542 345689999999
Q ss_pred HHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--CCCcccceEEecccccccc
Q 015595 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLSR 188 (404)
Q Consensus 111 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~~ 188 (404)
++|+.|+.+.++++... ..+..+.|+............+++|+|+||+.+.+++... .+..++++|+||+|++.+.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 99999999999998654 5677788888776666667778999999999999988764 4567899999999999988
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEe
Q 015595 189 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 234 (404)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 234 (404)
.+...+..++..+++..|++++|||+++....+...++.+|..+..
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 8999999999999889999999999999999999999998877653
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5.1e-33 Score=236.00 Aligned_cols=201 Identities=35% Similarity=0.592 Sum_probs=176.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
..|+++++++.+.+++.+.||..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.+++|++|+++
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 93 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 93 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHH
Confidence 56999999999999999999999999999999999999999999999999999999999988766655668999999999
Q ss_pred HHHHHHHHHHHHcccc-CeeEEEEEcCcchHHHHHHHhc-CCCeEEeChHHHHHHHHcc--CCCcccceEEeccccccc-
Q 015595 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRK--TLRTRAIKLLDESDEMLS- 187 (404)
Q Consensus 113 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~l~~~--~~~~~~~vIiDE~h~~~~- 187 (404)
|+.|+.+.++++.... ++.+..+.|+.........+.. .++|+|+||+.+..++... .+..++++|+||+|++.+
T Consensus 94 L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 173 (220)
T 1t6n_A 94 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 173 (220)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcc
Confidence 9999999999987665 7888888888876665555543 5799999999999988775 456789999999999876
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEE
Q 015595 188 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKIL 233 (404)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 233 (404)
..+...+..+++.+++..|++++|||+++....+...++.+|..+.
T Consensus 174 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 174 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 4677888888888888999999999999999999999999887654
No 69
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=6.4e-33 Score=245.22 Aligned_cols=203 Identities=35% Similarity=0.564 Sum_probs=178.8
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcC--CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEE
Q 015595 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (404)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (404)
....+|+++++++.+.+++..+||..|+++|.++++.++.+ +++++++|||||||++|+++++..+.....++++||+
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE
Confidence 34678999999999999999999999999999999999987 8999999999999999999999998777777789999
Q ss_pred cccHHHHHHHHHHHHHHcccc-CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEeccc
Q 015595 108 SPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDESD 183 (404)
Q Consensus 108 ~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE~h 183 (404)
+|+++|+.|+.+.++++.... ++.+....++....... ..+++|+|+||+++..++.+. .+..++++||||+|
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH
Confidence 999999999999999987654 67777777776543221 346899999999999999652 46788999999999
Q ss_pred cccc-cCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCeEEEec
Q 015595 184 EMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 235 (404)
Q Consensus 184 ~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 235 (404)
.+.+ ..+...+..+...+++..|++++|||+++.+..+...++.+|..+...
T Consensus 246 ~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 9987 678888999999999999999999999999999999999999887654
No 70
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=238.77 Aligned_cols=198 Identities=28% Similarity=0.496 Sum_probs=173.5
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCC----CceeEEE
Q 015595 33 TSFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQALI 106 (404)
Q Consensus 33 ~~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~----~~~~~li 106 (404)
..|.+++ +++.+.+++..+||..|+++|.++++.++.++++++++|||+|||++++++++..+.... .+.+++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 3466665 899999999999999999999999999999999999999999999999999988775421 3557999
Q ss_pred EcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc---CCCcccceEEeccc
Q 015595 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLDESD 183 (404)
Q Consensus 107 l~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~vIiDE~h 183 (404)
++|+++|+.|+.+.++++....+..+..+.|+.........+..+++|+|+||+++..++... .+..++++|+||+|
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 999999999999999999888888999999998887777777778999999999999888764 46778999999999
Q ss_pred cccccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhccCCCe
Q 015595 184 EMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPV 230 (404)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 230 (404)
++.+.++...+..++..++...|+++||||+++++..+.+.++.++.
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999888776543
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=4.5e-31 Score=248.09 Aligned_cols=317 Identities=15% Similarity=0.193 Sum_probs=230.2
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|+ +|++.|.-..-.+..|+ |..+.||+|||+++.++++-....+.. +.+++|+..|+.|-.+++..+...+|+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~---vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKG---VHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSC---EEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCc---eEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 577 79999998888787775 889999999999999998755555544 999999999999999999999999999
Q ss_pred eEEEEEcC--------------------------------------------------cchHHHHHHHhcCCCeEEeChH
Q 015595 131 QAHACVGG--------------------------------------------------KSVGEDIRKLEHGVHVVSGTPG 160 (404)
Q Consensus 131 ~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~iiv~T~~ 160 (404)
++.++... .+..++.... .++|.++|..
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DItYgTn~ 223 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVTYGTNN 223 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEEEEEHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCEEccCc
Confidence 99988872 1111222222 3899999987
Q ss_pred HHH-HHHHcc--------CCCcccceEEeccccccccC----------------cHHHHHHHHhhCC-------------
Q 015595 161 RVC-DMIKRK--------TLRTRAIKLLDESDEMLSRG----------------FKDQIYDVYRYLP------------- 202 (404)
Q Consensus 161 ~l~-~~l~~~--------~~~~~~~vIiDE~h~~~~~~----------------~~~~~~~~~~~~~------------- 202 (404)
.|- ++|..+ ......+.|+||++.++-.. ....+..+...+.
T Consensus 224 EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~ 303 (822)
T 3jux_A 224 EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKART 303 (822)
T ss_dssp HHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSC
T ss_pred chhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCe
Confidence 655 333322 23456788999999753110 0011111111110
Q ss_pred -------------------------------------------C------------------------------------
Q 015595 203 -------------------------------------------P------------------------------------ 203 (404)
Q Consensus 203 -------------------------------------------~------------------------------------ 203 (404)
+
T Consensus 304 v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiE 383 (822)
T 3jux_A 304 IILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIE 383 (822)
T ss_dssp EEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHH
T ss_pred EEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHH
Confidence 0
Q ss_pred -------------------------CceEEEEeeecchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHH
Q 015595 204 -------------------------DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF 258 (404)
Q Consensus 204 -------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (404)
-.++.+||||...+..++.+.+..+ +...+.........+..........|.
T Consensus 384 aKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~---vv~IPtnkp~~R~d~~d~vy~t~~eK~ 460 (822)
T 3jux_A 384 AKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME---VVVIPTHKPMIRKDHDDLVFRTQKEKY 460 (822)
T ss_dssp HHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC---EEECCCSSCCCCEECCCEEESSHHHHH
T ss_pred HHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe---EEEECCCCCcceeecCcEEEecHHHHH
Confidence 0589999999988776665555332 222222222233333223334555688
Q ss_pred HHHHhhhhcC--CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCC
Q 015595 259 DTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 336 (404)
Q Consensus 259 ~~l~~~l~~~--~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~ 336 (404)
..+...+... .+.++||||+|++.++.+++.|+..++.+..+||+....++..+.+.++.| .|+|||+++++|+|+
T Consensus 461 ~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI 538 (822)
T 3jux_A 461 EKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDI 538 (822)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCC
T ss_pred HHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCc
Confidence 8887777643 567899999999999999999999999999999995444444444555544 699999999999999
Q ss_pred C--------CCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHH
Q 015595 337 Q--------QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIK 380 (404)
Q Consensus 337 p--------~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 380 (404)
+ +..+||.++.|.|...|.||+||+||.|.+|.++.|++.+|..
T Consensus 539 ~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 539 KLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp CCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHH
T ss_pred cCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHH
Confidence 8 5669999999999999999999999999999999999988743
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=2.2e-32 Score=274.57 Aligned_cols=309 Identities=11% Similarity=0.111 Sum_probs=206.1
Q ss_pred CCcHHHHHhhhhhhc--------------CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIK--------------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKV 120 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~--------------~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~ 120 (404)
.||++|.++++.+++ +++.++.++||||||+++ ++++..+.......++||+||+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998875 367899999999999997 44555554433445899999999999999999
Q ss_pred HHHHccccCeeEEEEEcCcchHHHHHHHh-cCCCeEEeChHHHHHHHHcc----CCCcccceEEeccccccccCcHHHHH
Q 015595 121 ILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLDESDEMLSRGFKDQIY 195 (404)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~l~~~----~~~~~~~vIiDE~h~~~~~~~~~~~~ 195 (404)
+..+... .+.++.+.......+. .+.+|+|+|+++|...+... .+....++|+||||++... ....
T Consensus 350 f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~---~~~~ 420 (1038)
T 2w00_A 350 YQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG---EAQK 420 (1038)
T ss_dssp HHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH---HHHH
T ss_pred HHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch---HHHH
Confidence 9887532 1223333333334443 46899999999999887643 2456789999999996532 3345
Q ss_pred HHHhhCCCCceEEEEeeecchHHH----HHHHhccCCCeEEEecCCcc---ccCCceEEEEEe-----------c-----
Q 015595 196 DVYRYLPPDLQVVLISATLPHEIL----EMTTKFMTDPVKILVKRDEL---TLEGIKQFFVAV-----------E----- 252 (404)
Q Consensus 196 ~~~~~~~~~~~~i~~SAT~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----------~----- 252 (404)
.+...++ +.+++++||||..... ......++.+.......... ....+...+... +
T Consensus 421 ~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~ 499 (1038)
T 2w00_A 421 NLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLS 499 (1038)
T ss_dssp HHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHH
T ss_pred HHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHH
Confidence 5666665 5789999999964211 01112223322211100000 000000000000 0
Q ss_pred --------CchhHHHHHH-hhhhc-----------CCCCeEEEEecchhhHHHHHHHHhhCC------------CeE-EE
Q 015595 253 --------REEWKFDTLC-DLYDT-----------LTITQAVIFCNTKRKVDWLTEKMRGYN------------FTV-SS 299 (404)
Q Consensus 253 --------~~~~~~~~l~-~~l~~-----------~~~~k~lIf~~~~~~~~~l~~~l~~~~------------~~~-~~ 299 (404)
....+...+. .++.. ..+.++||||+++.+|..+++.|...+ +.+ ..
T Consensus 500 ~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv 579 (1038)
T 2w00_A 500 AAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATI 579 (1038)
T ss_dssp HTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEE
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEE
Confidence 0111222222 22221 134589999999999999999997653 444 45
Q ss_pred ecCC----------C----------CHH-----------------------------HHHHHHHHHhcCCCcEEEEcCcc
Q 015595 300 MHGD----------M----------PQK-----------------------------ERDAIMGEFRSGTTRVLITTDVW 330 (404)
Q Consensus 300 ~~~~----------~----------~~~-----------------------------~r~~~~~~f~~~~~~vlv~t~~~ 330 (404)
+|+. + +.. .|..++++|++|+.+|||+|+++
T Consensus 580 ~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~l 659 (1038)
T 2w00_A 580 FSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMF 659 (1038)
T ss_dssp CCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTT
T ss_pred EeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchH
Confidence 5543 1 211 37788899999999999999999
Q ss_pred ccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCc----eeEEEEec
Q 015595 331 ARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK----GVAINFVK 375 (404)
Q Consensus 331 ~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~----~~~~~~~~ 375 (404)
.+|+|+|.+ .++.++.|.+...|+|++||++|.+.. |.++.|+.
T Consensus 660 ltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 660 LTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999 667789999999999999999998653 66776665
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=235.22 Aligned_cols=215 Identities=24% Similarity=0.440 Sum_probs=177.6
Q ss_pred eeccCCcccccccccC----CCCHHHHHHHHHCCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc-
Q 015595 23 FETTEGVEAITSFDAM----GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT- 97 (404)
Q Consensus 23 ~~~~~~~~~~~~~~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~- 97 (404)
......+++..+|+++ ++++.+.+++.+.||..|+++|.++++.+++++++++.+|||+|||++++++++..+..
T Consensus 15 ~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~ 94 (245)
T 3dkp_A 15 VQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP 94 (245)
T ss_dssp EESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC
T ss_pred ecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc
Confidence 3445567778888887 89999999999999999999999999999999999999999999999999999887754
Q ss_pred CCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHH-HHhcCCCeEEeChHHHHHHHHcc----CCC
Q 015595 98 SSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR-KLEHGVHVVSGTPGRVCDMIKRK----TLR 172 (404)
Q Consensus 98 ~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~T~~~l~~~l~~~----~~~ 172 (404)
...+.+++|++|+++|+.|+.+.++++....+..+..+.++........ ....+++|+|+||+++..++... .+.
T Consensus 95 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 95 ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 2345689999999999999999999998887887777666543322211 12346899999999999998765 456
Q ss_pred cccceEEeccccccc---cCcHHHHHHHHhhC-CCCceEEEEeeecchHHHHHHHhccCCCeEEEecCC
Q 015595 173 TRAIKLLDESDEMLS---RGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 237 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~---~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 237 (404)
.++++|+||+|++.+ .++...+..++..+ +.+.|+++||||+++++..+...++.+|..+.+...
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 789999999999887 46777777777665 457899999999999999999999999988876543
No 74
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.97 E-value=5.3e-29 Score=200.74 Aligned_cols=163 Identities=66% Similarity=1.110 Sum_probs=148.8
Q ss_pred CCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCC
Q 015595 242 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTT 321 (404)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 321 (404)
.++.+.+..++....|...+..+++...++++||||++.+.++.++..|...++.+..+||+++..+|..+++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 35678888887776699999999998888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcccc
Q 015595 322 RVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVA 401 (404)
Q Consensus 322 ~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
+|||+|+++++|+|+|++++||++++|++...|.||+||+||.|+.|.+++++.+.+...+..++++++..++++|.++.
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccC
Q 015595 402 DLI 404 (404)
Q Consensus 402 ~~~ 404 (404)
+++
T Consensus 162 ~~~ 164 (165)
T 1fuk_A 162 TLL 164 (165)
T ss_dssp TTT
T ss_pred hhc
Confidence 764
No 75
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=198.70 Aligned_cols=164 Identities=43% Similarity=0.827 Sum_probs=150.5
Q ss_pred cccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhc
Q 015595 239 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS 318 (404)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 318 (404)
..+.++.+.+..++....|...+..+++....+++||||++...++.++..|...++.+..+||+++..+|..+++.|++
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34668889999888877799999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCccccCCCCCCCCEEEEccCC------CChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccc
Q 015595 319 GTTRVLITTDVWARGLDVQQVSLVINYDLP------NNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQ 392 (404)
Q Consensus 319 ~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (404)
|+.+|||||+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.+++++.+.+...+..+++.++..
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cccCCccccc
Q 015595 393 IDEMPMNVAD 402 (404)
Q Consensus 393 ~~~~~~~~~~ 402 (404)
++++|..-.+
T Consensus 163 ~~~~~~~~~~ 172 (175)
T 2rb4_A 163 IKQLNAEDMD 172 (175)
T ss_dssp CEEECSSCCC
T ss_pred ccccCCchhc
Confidence 9998876543
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=4.1e-28 Score=194.98 Aligned_cols=158 Identities=42% Similarity=0.711 Sum_probs=147.0
Q ss_pred cccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhc
Q 015595 239 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS 318 (404)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 318 (404)
....++.+.+..++... |...|..++....++++||||++...++.+++.|...++.+..+||+++..+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~~~-K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREEN-KFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCGGG-HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECChHH-HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 44567888888776554 99999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCC
Q 015595 319 GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMP 397 (404)
Q Consensus 319 ~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (404)
|+.+|||+|+++++|+|+|++++||++++|+|...|.||+||+||.|+.|.+++++.+.+...+..+++.++..+++++
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877653
No 77
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=202.27 Aligned_cols=179 Identities=28% Similarity=0.412 Sum_probs=146.3
Q ss_pred HhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecC
Q 015595 223 TKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHG 302 (404)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~ 302 (404)
+.++.+|..+.+........++.+.+..++.. .|...|.+++... ++++||||++...++.+++.|+..++.+..+||
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~-~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEE-AKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp -------------------CCSEEEEEECCGG-GHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChH-HHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 35667787777766666778888988887765 4899999988874 468999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccC-cHHH
Q 015595 303 DMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKND-DIKI 381 (404)
Q Consensus 303 ~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~ 381 (404)
+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|++...|+||+||+||.|+.|.+++|+++. +...
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~ 166 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESV 166 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999976 7889
Q ss_pred HHHHHHHHccccccCCcccccc
Q 015595 382 LRDIEQYYSTQIDEMPMNVADL 403 (404)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
+..+++.++.....+|.++.++
T Consensus 167 ~~~l~~~l~~~~~~~p~~l~~~ 188 (191)
T 2p6n_A 167 LMDLKALLLEAKQKVPPVLQVL 188 (191)
T ss_dssp HHHHHHHHHHTTCCCCHHHHST
T ss_pred HHHHHHHHHHccCcCCHHHHhh
Confidence 9999999999999999988764
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=2.8e-28 Score=197.47 Aligned_cols=160 Identities=36% Similarity=0.709 Sum_probs=145.8
Q ss_pred cCCceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCC
Q 015595 241 LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT 320 (404)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 320 (404)
+..+.+++..++.. .|...|..+++....+++||||++...++.+++.|...++.+..+||+++..+|..+++.|++|+
T Consensus 3 ~~~i~q~~~~~~~~-~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDN-EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGG-GHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChH-HHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 45677888777765 49999999999888899999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccC-cHHHHHHHHHHHccccccCCcc
Q 015595 321 TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKND-DIKILRDIEQYYSTQIDEMPMN 399 (404)
Q Consensus 321 ~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 399 (404)
.+|||||+++++|+|+|++++||++++|+|...|.||+||+||.|+.|.+++++.+. +...++.+++.++..++++|.+
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 999999999999999999999999999999999999999999999999999999876 6788999999999999999987
Q ss_pred cc
Q 015595 400 VA 401 (404)
Q Consensus 400 ~~ 401 (404)
++
T Consensus 162 ~~ 163 (172)
T 1t5i_A 162 ID 163 (172)
T ss_dssp --
T ss_pred hc
Confidence 64
No 79
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=3e-28 Score=199.47 Aligned_cols=165 Identities=36% Similarity=0.589 Sum_probs=138.6
Q ss_pred ccccCCceEEEEEecCchhHHHHHHhhhhcC-CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHH
Q 015595 238 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEF 316 (404)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 316 (404)
.....++.+.+..++... |...|.++++.. +++++||||++...++.+++.|...++.+..+||+++..+|..+++.|
T Consensus 14 ~~~~~~i~q~~~~v~~~~-K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESD-KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp --CCTTEEEEEEECCGGG-HHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCCceEEEEEeCcHH-HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 344677888888877654 899999998876 578999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccC
Q 015595 317 RSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEM 396 (404)
Q Consensus 317 ~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (404)
++|+.+|||+|+++++|+|+|++++||++++|+|...|.||+||+||.|+.|.+++++.+.+...++.+.+.++....++
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 172 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV 172 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccc
Q 015595 397 PMNVADL 403 (404)
Q Consensus 397 ~~~~~~~ 403 (404)
|.++.++
T Consensus 173 ~~~l~~~ 179 (185)
T 2jgn_A 173 PSWLENM 179 (185)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9887653
No 80
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=9.8e-26 Score=215.98 Aligned_cols=315 Identities=18% Similarity=0.191 Sum_probs=227.6
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
.|+ +|++.|..+++.++.|+ +..+.||+|||+++.++++.....+ ..++|++||+.|+.|..+++..+...+++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G---~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTG---KGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTC---SCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhC---CCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 688 99999999999999998 8999999999999999986444333 35999999999999999999999999999
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCeEEeChHHH-HHHHHcc--------CCC---cccceEEeccccccccC---------
Q 015595 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK--------TLR---TRAIKLLDESDEMLSRG--------- 189 (404)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~l~~~--------~~~---~~~~vIiDE~h~~~~~~--------- 189 (404)
++..+.||.+...+ ....+++|+|+||+.| .+++..+ .+. .+.++|+||+|.++...
T Consensus 150 sv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLIISg 227 (997)
T 2ipc_A 150 SVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISG 227 (997)
T ss_dssp CEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEEEE
T ss_pred eEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeeeeC
Confidence 99999999875433 3334699999999999 6777654 245 67899999999875221
Q ss_pred -------cHHHHHHHHhhCCC-----------------------------------------------------------
Q 015595 190 -------FKDQIYDVYRYLPP----------------------------------------------------------- 203 (404)
Q Consensus 190 -------~~~~~~~~~~~~~~----------------------------------------------------------- 203 (404)
....+..+...++.
T Consensus 228 p~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~~A 307 (997)
T 2ipc_A 228 PAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQA 307 (997)
T ss_dssp SCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHHHH
Confidence 11112222221110
Q ss_pred ----------------------------------------------------------------------CceEEEEeee
Q 015595 204 ----------------------------------------------------------------------DLQVVLISAT 213 (404)
Q Consensus 204 ----------------------------------------------------------------------~~~~i~~SAT 213 (404)
-.++.+||+|
T Consensus 308 LrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGT 387 (997)
T 2ipc_A 308 IRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGT 387 (997)
T ss_dssp HHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEESS
T ss_pred HHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecCCC
Confidence 0578999999
Q ss_pred cchHHHHHHHhccCCCeEEEecCCccccCCceEEEEEecCchhHHHHHHhhhhc--CCCCeEEEEecchhhHHHHHHHHh
Q 015595 214 LPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMR 291 (404)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~k~lIf~~~~~~~~~l~~~l~ 291 (404)
...+..++.+-+-.+ + ...+....................|...+.+-+.. ..+.++||+|.|++..+.+.+.|+
T Consensus 388 A~tE~~Ef~~iY~l~-V--v~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 388 AKTEEKEFQEIYGMD-V--VVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp CGGGHHHHHHHHCCC-E--EECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhCCC-E--EEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHh
Confidence 988766665544333 2 22233333333334444445555576665544332 246789999999999999999998
Q ss_pred ----------------------------------------------------------------------------hCCC
Q 015595 292 ----------------------------------------------------------------------------GYNF 295 (404)
Q Consensus 292 ----------------------------------------------------------------------------~~~~ 295 (404)
+.++
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI 544 (997)
T 2ipc_A 465 EPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGI 544 (997)
T ss_dssp CGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcCC
Confidence 4466
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCC-CcEEEEcCccccCCCCCCC-------------------C---------------
Q 015595 296 TVSSMHGDMPQKERDAIMGEFRSGT-TRVLITTDVWARGLDVQQV-------------------S--------------- 340 (404)
Q Consensus 296 ~~~~~~~~~~~~~r~~~~~~f~~~~-~~vlv~t~~~~~Gid~p~~-------------------~--------------- 340 (404)
+...+++..- +.-.+++. +.|. -.|-|||.++++|.|+.-- .
T Consensus 545 ~H~VLNAK~h-e~EAeIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (997)
T 2ipc_A 545 PHQVLNAKHH-AREAEIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKE 621 (997)
T ss_dssp CCCEECSSSH-HHHHHHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCH
T ss_pred Ceeeccccch-HHHHHHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccch
Confidence 6667776632 22123332 3444 4688999999999998622 1
Q ss_pred ----------------------------------------EEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcH
Q 015595 341 ----------------------------------------LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDI 379 (404)
Q Consensus 341 ----------------------------------------~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 379 (404)
+||-...+.|..-=.|..||+||.|.+|.+.++++-+|.
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 622 EEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDD 700 (997)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSH
T ss_pred hhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChH
Confidence 677777788888899999999999999999998887654
No 81
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=7.3e-27 Score=227.22 Aligned_cols=118 Identities=23% Similarity=0.324 Sum_probs=108.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccC-
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL- 347 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~- 347 (404)
.+.++||||+++..++.+++.|...++.+..+||+++..+|.++++.|+.|+.+|||||+++++|+|+|++++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHH
Q 015595 348 ----PNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQ 387 (404)
Q Consensus 348 ----p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 387 (404)
|.|..+|+||+||+||.+ .|.+++++++.+......+.+
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 889999999999999985 799999999877655444443
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=1.5e-26 Score=193.91 Aligned_cols=153 Identities=31% Similarity=0.538 Sum_probs=140.4
Q ss_pred EEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 015595 246 QFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLI 325 (404)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 325 (404)
+.....+. ..|...+..++....++++||||+++..++.+++.|...++.+..+||+++..+|..+++.|++|..+|||
T Consensus 8 ~~~~~~~~-~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 8 EEAVPAPV-RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp CEEEECCT-TSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred eeEEeCCH-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 33334443 44999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcc
Q 015595 326 TTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMN 399 (404)
Q Consensus 326 ~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (404)
||+++++|+|+|++++||++++|+|...|.||+||+||.|+.|.+++++++.+...+..+++.++..+..++..
T Consensus 87 aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (212)
T 3eaq_A 87 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 160 (212)
T ss_dssp ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCC
T ss_pred ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887753
No 83
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=4.4e-25 Score=214.60 Aligned_cols=131 Identities=22% Similarity=0.337 Sum_probs=115.7
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccC-
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDL- 347 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~- 347 (404)
.+.++||||++...++.+++.|+..++.+..+||+++..+|.++++.|++|+.+|||+|+.+++|+|+|++++||+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHH---------HHHHHccccccCCccc
Q 015595 348 ----PNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRD---------IEQYYSTQIDEMPMNV 400 (404)
Q Consensus 348 ----p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 400 (404)
|.|..+|+||+||+||. ..|.+++++++.+...... ++..++......|..+
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~ 588 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTI 588 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCch
Confidence 89999999999999998 6899999999876654443 4444555555555544
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=1.1e-25 Score=196.98 Aligned_cols=155 Identities=32% Similarity=0.543 Sum_probs=140.5
Q ss_pred ceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcE
Q 015595 244 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRV 323 (404)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 323 (404)
+.+++..++... |...+..+++...++++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|..+|
T Consensus 3 v~~~~i~~~~~~-K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRG-RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSS-HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHH-HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 456666666654 9999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCcc
Q 015595 324 LITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMN 399 (404)
Q Consensus 324 lv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (404)
||||+++++|+|+|++++||+++.|.|...|.||+||+||.|+.|.+++|+++.+...+..+++.++..+..++..
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887754
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.88 E-value=1.5e-27 Score=193.04 Aligned_cols=156 Identities=31% Similarity=0.551 Sum_probs=143.1
Q ss_pred CceEEEEEecCchhHHHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCc
Q 015595 243 GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTR 322 (404)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 322 (404)
++.+.+..++....|...|..+++...++++||||++...++.+++.|+..++.+..+||+++..+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 34566666666455888899999887788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccccccCCc
Q 015595 323 VLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPM 398 (404)
Q Consensus 323 vlv~t~~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (404)
|||||+++++|+|+|++++||++++|+|...|+||+||+||.|+.|.+++++.+.+...+..+++.++..++..+.
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888776553
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=182.37 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=117.0
Q ss_pred CCCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC---CCceeEEEEcccHHHHHH-HHHHHHHHcc
Q 015595 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTRELATQ-TEKVILAIGD 126 (404)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q-~~~~~~~~~~ 126 (404)
.....|+++|.++++.+++++++++.+|||+|||++++.++...+... ..+.+++|++|+++|+.| +.+.+.++..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 344589999999999999999999999999999999998888766432 224579999999999999 7888888764
Q ss_pred ccCeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc--------CCCcccceEEeccccccccCcHHHH-HHH
Q 015595 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--------TLRTRAIKLLDESDEMLSRGFKDQI-YDV 197 (404)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--------~~~~~~~vIiDE~h~~~~~~~~~~~-~~~ 197 (404)
. ++.+..+.|+............+++|+|+||+.+...+... .+..++++|+||+|++....+...+ ..+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 4 56777777776554444444456999999999999888763 3567899999999998776444433 333
Q ss_pred HhhC-------------CCCceEEEEeee
Q 015595 198 YRYL-------------PPDLQVVLISAT 213 (404)
Q Consensus 198 ~~~~-------------~~~~~~i~~SAT 213 (404)
.... .+.+++++||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2211 157899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=7.9e-23 Score=195.08 Aligned_cols=111 Identities=13% Similarity=0.237 Sum_probs=70.6
Q ss_pred HHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEE--EcCccccCCCCC
Q 015595 260 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLI--TTDVWARGLDVQ 337 (404)
Q Consensus 260 ~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv--~t~~~~~Gid~p 337 (404)
.+..++.. .++++|||++|...++.+++.++.. . ...++.. ..+.++++.|+++. .|++ +|..+++|+|+|
T Consensus 375 ~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~~--~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~ 447 (540)
T 2vl7_A 375 LLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSGI--P-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFR 447 (540)
T ss_dssp HHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTTS--C-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-----------
T ss_pred HHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhccC--c-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecC
Confidence 34444443 5678999999999999999888752 2 3445543 46788999998864 6776 789999999999
Q ss_pred C----CCEEEEccCCCCh------------------------------hhhhhhccccCCCCCceeEEEEeccC
Q 015595 338 Q----VSLVINYDLPNNR------------------------------ELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 338 ~----~~~vi~~~~p~s~------------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
+ +++||++++|... ..+.|.+||+.|...+.-+++++++.
T Consensus 448 ~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 448 EKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp ----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred CCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 7 7899999988322 23459999999986664455566654
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=1.6e-20 Score=179.82 Aligned_cols=305 Identities=15% Similarity=0.135 Sum_probs=194.1
Q ss_pred CCcHHHHHhhhh----hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCe
Q 015595 55 KPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (404)
Q Consensus 55 ~~~~~Q~~~~~~----~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 130 (404)
++||+|.+++.. +..++++++.+|||+|||++++++++. .+.+++|++||++|+.|+.+++..+....++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 799999997764 456899999999999999999999886 2357999999999999999999887666677
Q ss_pred eEEEEEcCcch---------------------------------HHH------------------HHHHhcCCCeEEeCh
Q 015595 131 QAHACVGGKSV---------------------------------GED------------------IRKLEHGVHVVSGTP 159 (404)
Q Consensus 131 ~~~~~~~~~~~---------------------------------~~~------------------~~~~~~~~~iiv~T~ 159 (404)
++..+.|+... ... .+.....++|+|+|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 77776663321 011 122234689999999
Q ss_pred HHHHHHHHccC---CCcccceEEeccccccccCc----------------------------------------------
Q 015595 160 GRVCDMIKRKT---LRTRAIKLLDESDEMLSRGF---------------------------------------------- 190 (404)
Q Consensus 160 ~~l~~~l~~~~---~~~~~~vIiDE~h~~~~~~~---------------------------------------------- 190 (404)
..+.....+.. .....++||||||.+.+ ..
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99987654332 23567899999998765 20
Q ss_pred ---------HHHHH----------------------------HHH----------------------------hhCCCC-
Q 015595 191 ---------KDQIY----------------------------DVY----------------------------RYLPPD- 204 (404)
Q Consensus 191 ---------~~~~~----------------------------~~~----------------------------~~~~~~- 204 (404)
...+. ..+ +.+...
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 00000 000 001122
Q ss_pred ceEEEEeeecchHHHHHHHhccCCC--eEE---Ee-cCCccccCCceEEEEEe--cC--c---hhHHHH----HHhhhhc
Q 015595 205 LQVVLISATLPHEILEMTTKFMTDP--VKI---LV-KRDELTLEGIKQFFVAV--ER--E---EWKFDT----LCDLYDT 267 (404)
Q Consensus 205 ~~~i~~SAT~~~~~~~~~~~~~~~~--~~~---~~-~~~~~~~~~~~~~~~~~--~~--~---~~~~~~----l~~~l~~ 267 (404)
..+|++|||+.+ ...+. ..++-+ ... .. ..... ..-...+... +. . ...... +.++++.
T Consensus 316 ~svIltSaTL~~-~~~~~-~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~ 391 (551)
T 3crv_A 316 LSIILMSGTLPP-REYME-KVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ 391 (551)
T ss_dssp CEEEEEESSCCC-HHHHH-HTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeCCCc-HHHHH-HHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 578999999987 23333 333332 211 11 11111 2222222221 11 0 111223 3333333
Q ss_pred CCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEc--CccccCCCCC-----CCC
Q 015595 268 LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT--DVWARGLDVQ-----QVS 340 (404)
Q Consensus 268 ~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t--~~~~~Gid~p-----~~~ 340 (404)
.++.++||++|....+.+++. .+..+..-..+++ +.+.++.|+.....||+++ ...++|+|+| .++
T Consensus 392 -~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~ 464 (551)
T 3crv_A 392 -AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLIS 464 (551)
T ss_dssp -CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEE
T ss_pred -CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCccee
Confidence 457899999999999999873 3334433223333 4567888864445899998 6999999999 477
Q ss_pred EEEEccCCCC---------------------h---------hhhhhhccccCCCCCceeEEEEeccC
Q 015595 341 LVINYDLPNN---------------------R---------ELYIHRIGRSGRFGRKGVAINFVKND 377 (404)
Q Consensus 341 ~vi~~~~p~s---------------------~---------~~~~Q~~GR~~R~g~~~~~~~~~~~~ 377 (404)
.||+.++|.. . ..+.|.+||+-|..++.-+++++++.
T Consensus 465 ~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 465 DVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 8999887631 1 11349999999987776666777765
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=1.2e-22 Score=178.47 Aligned_cols=153 Identities=22% Similarity=0.207 Sum_probs=121.9
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEE
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~ 134 (404)
+|+++|.++++.++++++.++++|||+|||.+++.++...+..+ ..++||++|+++|+.||.+++++++......+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 89999999999999888899999999999999988777665533 2369999999999999999999987666667777
Q ss_pred EEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeec
Q 015595 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 214 (404)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 214 (404)
+.++..... ......+|+|+|++.+.+... ..+..++++|+||||++.+ ..+..++..+.+..+++++|||+
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~-~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQPK-EWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTSCG-GGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECSSC
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhhHH-HHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeCCC
Confidence 777654432 122458999999987754322 2456779999999999864 36667777777789999999999
Q ss_pred chH
Q 015595 215 PHE 217 (404)
Q Consensus 215 ~~~ 217 (404)
++.
T Consensus 263 ~~~ 265 (282)
T 1rif_A 263 RDG 265 (282)
T ss_dssp CTT
T ss_pred CCc
Confidence 765
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=161.20 Aligned_cols=160 Identities=18% Similarity=0.213 Sum_probs=118.7
Q ss_pred CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCC--ceeEEEEcccHHHHHHHHHHHHHHcc-cc
Q 015595 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGD-FI 128 (404)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~L~~q~~~~~~~~~~-~~ 128 (404)
....++++|.++++.+.+++++++.||||||||+.+..+++........ ..++++++|+++++.|..+.+..... ..
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 3446899999999999999999999999999998877777765544332 45799999999999999888876432 23
Q ss_pred CeeEEEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccc-cccCcH-HHHHHHHhhCCCCce
Q 015595 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEM-LSRGFK-DQIYDVYRYLPPDLQ 206 (404)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~-~~~~~~-~~~~~~~~~~~~~~~ 206 (404)
+..+......... ....+.+|+|+||+++.+.+.. .+..++++|+||+|.. .+.++. ..+..+.... ++.|
T Consensus 138 ~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~ 210 (235)
T 3llm_A 138 GKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVR 210 (235)
T ss_dssp TSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSE
T ss_pred CceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCe
Confidence 3333322211110 0013478999999999998876 5888999999999985 454444 4556666655 4789
Q ss_pred EEEEeeecchHH
Q 015595 207 VVLISATLPHEI 218 (404)
Q Consensus 207 ~i~~SAT~~~~~ 218 (404)
++++|||++.+.
T Consensus 211 ~il~SAT~~~~~ 222 (235)
T 3llm_A 211 IVLMSATIDTSM 222 (235)
T ss_dssp EEEEECSSCCHH
T ss_pred EEEEecCCCHHH
Confidence 999999999875
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.84 E-value=4.4e-20 Score=157.20 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=108.9
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCee-EE
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ-AH 133 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~-~~ 133 (404)
.|+++|.++++.+++++++++++|||+|||.+++.++... +.+++|++|+++|+.||.+.+.++ +.. +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEE
Confidence 7899999999999999899999999999999988776553 346999999999999999998873 456 66
Q ss_pred EEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeee
Q 015595 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 213 (404)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 213 (404)
.+.|+... ..+|+|+|++.+....... ...++++|+||+|.+.+..+. .+...++ ..+++++|||
T Consensus 163 ~~~g~~~~---------~~~i~v~T~~~l~~~~~~~-~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LSAT 227 (237)
T 2fz4_A 163 EFSGRIKE---------LKPLTVSTYDSAYVNAEKL-GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLTAT 227 (237)
T ss_dssp EESSSCBC---------CCSEEEEEHHHHHHTHHHH-TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEEEES
T ss_pred EEeCCCCC---------cCCEEEEeHHHHHhhHHHh-cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEEecC
Confidence 66666542 4789999999987665532 245799999999999776644 3444444 6788999999
Q ss_pred cchH
Q 015595 214 LPHE 217 (404)
Q Consensus 214 ~~~~ 217 (404)
+.+.
T Consensus 228 p~r~ 231 (237)
T 2fz4_A 228 FERE 231 (237)
T ss_dssp CC--
T ss_pred CCCC
Confidence 9764
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.82 E-value=5.7e-19 Score=170.34 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=75.4
Q ss_pred HHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC--ccccCCCCCC
Q 015595 261 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD--VWARGLDVQQ 338 (404)
Q Consensus 261 l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~--~~~~Gid~p~ 338 (404)
+..+++. .++.++||++|....+.+++.++.. ... ...+++...+..++++|+ ++..||+++. .+++|+|+|+
T Consensus 440 i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~~~--~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g 514 (620)
T 4a15_A 440 IEDIILK-VKKNTIVYFPSYSLMDRVENRVSFE--HMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPG 514 (620)
T ss_dssp HHHHHHH-HCSCEEEEESCHHHHHHHTSSCCSC--CEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------
T ss_pred HHHHHHh-CCCCEEEEeCCHHHHHHHHHHHHhc--chh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCC
Confidence 3444443 3567999999999999999888732 222 444555668899999999 8889999984 8999999995
Q ss_pred --CCEEEEccCCCCh-----------------------------hhhhhhccccCCCCCceeEEEEecc
Q 015595 339 --VSLVINYDLPNNR-----------------------------ELYIHRIGRSGRFGRKGVAINFVKN 376 (404)
Q Consensus 339 --~~~vi~~~~p~s~-----------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~ 376 (404)
++.||+.++|... ....|.+||+-|...+.-+++++++
T Consensus 515 ~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 515 NELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 6799999987421 1235999999998766555666655
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.79 E-value=7.8e-19 Score=151.92 Aligned_cols=127 Identities=16% Similarity=0.243 Sum_probs=99.9
Q ss_pred chhHHHHHHhhhhcC--CCCeEEEEecchhhHHHHHHHHhhC-CCeEEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEcC
Q 015595 254 EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFRSG-TTR-VLITTD 328 (404)
Q Consensus 254 ~~~~~~~l~~~l~~~--~~~k~lIf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vlv~t~ 328 (404)
...|...+.+++... .+.++||||++...++.+...|... ++.+..+||+++..+|.++++.|+++ ... +|++|+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 445888888888765 6789999999999999999999884 89999999999999999999999988 666 688999
Q ss_pred ccccCCCCCCCCEEEEccCCCChhhhhhhccccCCCCCcee--EEEEeccCcHH
Q 015595 329 VWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV--AINFVKNDDIK 380 (404)
Q Consensus 329 ~~~~Gid~p~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~~~--~~~~~~~~~~~ 380 (404)
++++|+|++.+++||++++|+++..|.|++||++|.|+.+. ++.++..+..+
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiE 227 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 227 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHH
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHH
Confidence 99999999999999999999999999999999999998764 46677776443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.75 E-value=2.4e-08 Score=96.39 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=86.1
Q ss_pred cHHHHHhhhhhhcCCcEEEEcCCCCchhhHhH--HHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEE
Q 015595 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA--LTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (404)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~--~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~ 134 (404)
.+.|+.+++.++.++.+++.|++|+|||++.. +..+..+.. ..+.++++++||...+.++.+.+.......++....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHH
Confidence 68899999999999999999999999995543 333332211 234579999999999999888877654433321100
Q ss_pred EEcCcchHHHHHHHhcC-CCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeee
Q 015595 135 CVGGKSVGEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 213 (404)
Q Consensus 135 ~~~~~~~~~~~~~~~~~-~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 213 (404)
.. +... . ... ..++-.+++...-..........+++|+||++.+. ...+..++..++...++|++.-.
T Consensus 230 ~~-~~~~--~----~~Tih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 230 KK-RIPE--D----ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp CC-SCSC--C----CBTTTSCC-----------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEECT
T ss_pred Hh-ccch--h----hhhhHhhhccCCCchHHHhccCCCCCCCEEEEechhhCC----HHHHHHHHHhCCCCCEEEEEcch
Confidence 00 0000 0 000 01111122111000011122367899999999543 45667778888888888887655
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.50 E-value=8.8e-07 Score=84.61 Aligned_cols=127 Identities=20% Similarity=0.188 Sum_probs=78.8
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEE
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~ 134 (404)
.+++.|..++..++.++.+++.|++|+|||.++...+...... +.++++++||...+..+.+.+. .....
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~L~e~~~-------~~a~T 258 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARRLGEVTG-------RTAST 258 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHT-------SCEEE
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHHhHhhhc-------ccHHH
Confidence 6899999999999988899999999999997755433333222 3469999999988876655431 11000
Q ss_pred EEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeee
Q 015595 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 213 (404)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 213 (404)
.. ..+..... .+. .........+++|+||++.+. ...+..++..++...+++++.-.
T Consensus 259 ------ih---~ll~~~~~-------~~~--~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvGD~ 315 (574)
T 3e1s_A 259 ------VH---RLLGYGPQ-------GFR--HNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVGDT 315 (574)
T ss_dssp ------HH---HHTTEETT-------EES--CSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEECT
T ss_pred ------HH---HHHcCCcc-------hhh--hhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEecc
Confidence 00 00000000 000 001123456899999999763 34566677777767777665544
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.48 E-value=8.4e-07 Score=82.90 Aligned_cols=71 Identities=18% Similarity=0.285 Sum_probs=51.2
Q ss_pred HHCCCCCCcHHHHHhhhhhhcC-----CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHH
Q 015595 49 YQYGFEKPSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (404)
Q Consensus 49 ~~~~~~~~~~~Q~~~~~~~~~~-----~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~ 121 (404)
.-+.|..|++.|++++..++.. ..++|.|++|||||.++...+......+. ..+++++||...+..+.+.+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHHHHHHhhh
Confidence 3456778999999999876542 37899999999999776554444443332 35999999988777665544
No 97
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.46 E-value=2e-05 Score=77.13 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=57.6
Q ss_pred CCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcC-CCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
..+++.|.+++.. ....++|.|++|||||.+...-+.+.+... ....++|++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 3689999999983 356799999999999998887777777553 234579999999999999999998763
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.40 E-value=5e-07 Score=88.19 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=56.0
Q ss_pred CCcHHHHHhhhhhhcCC-cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~-~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
.|++.|.+|+..++..+ -.+|.||+|||||.+....+.+.+..+ .++|+++||..-++++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhc
Confidence 58999999999988765 468999999999998887777766554 35999999999999998888654
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=3.4e-06 Score=83.74 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=55.3
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
.+++.|.+++..++.+.-.+|.||+|+|||.+....+...+.. .+.++++++||...++++.+.+.+.
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 5789999999999887778999999999998876655444432 2346999999999999999888764
No 100
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.38 E-value=3.7e-06 Score=81.57 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=55.2
Q ss_pred CCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
..+++.|.+++..++.+...+|.||+|+|||.+....+...+.. .+.++++++|+...++++.+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 35799999999998887788999999999998866555444432 2346999999999999988887654
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.22 E-value=9.2e-06 Score=80.54 Aligned_cols=68 Identities=22% Similarity=0.190 Sum_probs=54.3
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
.+++.|.+++..++.+.-.+|.||+|+|||.+....+...+.. .+.++++++||...++++.+.+.+.
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 5789999999998888778999999999998766555444332 2346999999999999988887654
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.10 E-value=4.7e-05 Score=66.01 Aligned_cols=121 Identities=19% Similarity=0.213 Sum_probs=87.8
Q ss_pred hhHHHHHHhhhhcC--CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccc
Q 015595 255 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWAR 332 (404)
Q Consensus 255 ~~~~~~l~~~l~~~--~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 332 (404)
..|+..|..++... .+.+++||++.....+-+.+++...++.+..+.|.....+ .+ -.++...+.+.|...+-
T Consensus 108 SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~~ 182 (328)
T 3hgt_A 108 SGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGIN 182 (328)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCC
T ss_pred CccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCCC
Confidence 44887777777643 4679999999999999999999999999999999854432 11 12345556566776666
Q ss_pred CCC-----CCCCCEEEEccCCCChhhh-hhhccccCCC--C--CceeEEEEeccCcHH
Q 015595 333 GLD-----VQQVSLVINYDLPNNRELY-IHRIGRSGRF--G--RKGVAINFVKNDDIK 380 (404)
Q Consensus 333 Gid-----~p~~~~vi~~~~p~s~~~~-~Q~~GR~~R~--g--~~~~~~~~~~~~~~~ 380 (404)
|+| +..++.||.+|..+++..= +|.+-|+.|. | +...++.++....+.
T Consensus 183 gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 183 FTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp TTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 776 6789999999999999884 8988888887 3 346788888877654
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.69 E-value=0.0011 Score=59.58 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=55.2
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
.|+|+|..++..+...+.+++..+-+.|||.+....++..+.. .++..++++.|+...+..+.+.+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 7899999999877555678999999999998877766654433 234579999999998888877776654
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.51 E-value=0.00032 Score=63.86 Aligned_cols=107 Identities=19% Similarity=0.071 Sum_probs=62.3
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcC
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (404)
-.++.|+.|+|||....-.+ .. .+.++++|+++++.++.+.+.+.+ . ...
T Consensus 163 v~~I~G~aGsGKTt~I~~~~----~~----~~~lVlTpT~~aa~~l~~kl~~~~----~------------------~~~ 212 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRV----NF----EEDLILVPGRQAAEMIRRRANASG----I------------------IVA 212 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHC----CT----TTCEEEESCHHHHHHHHHHHTTTS----C------------------CCC
T ss_pred EEEEEcCCCCCHHHHHHHHh----cc----CCeEEEeCCHHHHHHHHHHhhhcC----c------------------ccc
Confidence 35899999999997654332 11 247999999999998888774321 0 001
Q ss_pred CCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeee
Q 015595 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 213 (404)
Q Consensus 152 ~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 213 (404)
...-+.|.+.++-.-........+++||||+-.+ . ...+..++...+. .+++++.-+
T Consensus 213 ~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 213 TKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEECT
T ss_pred ccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEecCc
Confidence 2334666665542211111123789999999854 2 2233344444433 555555444
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.35 E-value=0.00081 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCCchhhHhHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.++.+++.||+|+|||..+...+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 36789999999999997765433
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.33 E-value=0.0017 Score=62.47 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=57.2
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccc
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 127 (404)
.|+++|..++..+...+..++..+-|+|||.+....++..+... ++..++++.|+...+....+.++.+...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 58999999998775567789999999999988776665555443 3457999999999998888888776544
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.30 E-value=0.00095 Score=53.62 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (404)
+.-.++.||+|+|||..++-.+......+ .+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeecc
Confidence 45578999999999988766555444333 3588888874
No 108
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.30 E-value=0.00066 Score=60.35 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=27.6
Q ss_pred CcHHHHHhhhhhhc----CC---cEEEEcCCCCchhhHhHHHHHhh
Q 015595 56 PSAIQQRAVMPIIK----GR---DVIAQAQSGTGKTSMIALTVCQT 94 (404)
Q Consensus 56 ~~~~Q~~~~~~~~~----~~---~~iv~a~tGsGKT~~~~~~~~~~ 94 (404)
++|||.+.+..+.. ++ ..++.||.|+|||..+...+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 46888887766543 32 37999999999997766544433
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.28 E-value=0.00083 Score=54.15 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (404)
|+-.++.|++|+|||..++-.+.+....+. +++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~---kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQ---KIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEecc
Confidence 455688999999999887766655544443 599998874
No 110
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.27 E-value=0.00047 Score=67.64 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=56.8
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc-CCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
.+++-|++++.. .+..++|.|+.|||||.+...-+.+.+.. +-...++|+++.|+..+.++.+.+.+..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 579999999985 36689999999999999888777776654 3344579999999999999999998764
No 111
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.18 E-value=0.00088 Score=66.17 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=57.3
Q ss_pred CCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhc-CCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
..+++.|++++.+ ....++|.|+.|||||.+...-+.+.+.. +-...++|+++.|+..+.++.+.+.+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 3689999999986 35689999999999999888777777754 3344579999999999999999887753
No 112
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.16 E-value=0.0011 Score=54.76 Aligned_cols=111 Identities=13% Similarity=0.084 Sum_probs=60.2
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (404)
|.-.++.|++|+|||+.++-.+......+. +++++.|...-. . ...+....++..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~---kVli~~~~~d~r--~---~~~i~srlG~~~----------------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV---KYLVFKPKIDTR--S---IRNIQSRTGTSL----------------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEEECCCGG--G---CSSCCCCCCCSS-----------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC---EEEEEEeccCch--H---HHHHHHhcCCCc-----------------
Confidence 445688999999999887766655554443 488888764210 0 001111111110
Q ss_pred cCCCeEEeChHHHHHHHHccC-CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 150 HGVHVVSGTPGRVCDMIKRKT-LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 150 ~~~~iiv~T~~~l~~~l~~~~-~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
..+-+.+.+.+...+.... -...++||+||++.+... ....+..+.. ....+++..
T Consensus 67 --~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~-~ve~l~~L~~---~gi~Vil~G 123 (223)
T 2b8t_A 67 --PSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDR-ICEVANILAE---NGFVVIISG 123 (223)
T ss_dssp --CCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTH-HHHHHHHHHH---TTCEEEEEC
T ss_pred --cccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHH-HHHHHHHHHh---CCCeEEEEe
Confidence 1223455566666665432 234789999999975432 2334444333 245444433
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.09 E-value=0.00047 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCCchhhHhHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.++.+++.||+|+|||..+-..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 67789999999999997655433
No 114
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0057 Score=53.42 Aligned_cols=22 Identities=5% Similarity=0.042 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
+.++++.||+|+|||.++-..+
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~ 66 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVM 66 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4678999999999997655443
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.06 E-value=0.0042 Score=54.91 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
++.+++.||+|+|||..+-..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i 57 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAA 57 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 467999999999999765543
No 116
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.03 E-value=0.0012 Score=69.13 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=57.5
Q ss_pred CCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCC---CceeEEEEcccHHHHHHHHHHHHHH
Q 015595 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
.+++-|..++.. .+++++|.|+.|||||.+.+.-++..+..+. ...+++++++|++.+.++.+.+...
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 689999999985 3789999999999999998877777776643 4457999999999999999888774
No 117
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.00 E-value=0.0016 Score=53.08 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=29.1
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
|.-.++.+++|+|||..++-.+......+. +++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~---kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQ---HAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEeccC
Confidence 344578999999999887777666655554 4999999764
No 118
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.98 E-value=0.0081 Score=49.48 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=25.2
Q ss_pred CcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeee
Q 015595 172 RTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 213 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 213 (404)
....++++||+|.+.... ...+..++...+....+|+.|..
T Consensus 101 ~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTADA-QAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence 345688899999875443 34555566655555555555433
No 119
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.90 E-value=0.0015 Score=56.61 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=33.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhh--hhcCCcEEEEcCCCCchhhHhHH
Q 015595 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP--IIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~--~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
...|+++.-.+...+.+.+.-.. + ....+.+.. +...+.+++.||+|+|||..+-.
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVEL-P-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHH-H-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-H-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 35688887777777777652210 0 001112222 23457799999999999966543
No 120
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.80 E-value=0.0085 Score=45.85 Aligned_cols=38 Identities=8% Similarity=0.129 Sum_probs=23.7
Q ss_pred cceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeee
Q 015595 175 AIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 213 (404)
Q Consensus 175 ~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 213 (404)
+++++||+|.+.... ...+..++...+.+.++|+.|..
T Consensus 78 g~l~ldei~~l~~~~-q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTREQ-QYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCHHH-HHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCHHH-HHHHHHHHhhcCCCEEEEEECCc
Confidence 577899999876543 34444555555556666655544
No 121
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.0013 Score=59.08 Aligned_cols=55 Identities=20% Similarity=0.319 Sum_probs=36.9
Q ss_pred cccccccCCCCHHHHHHHHHCC---CCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhH
Q 015595 31 AITSFDAMGIKDDLLRGIYQYG---FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~ 88 (404)
|..+|++.+=-+.+.+.+++.= +..|-.++...+ ..-+.+++.||+|+|||+.+-
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHHH
Confidence 5578999987778888887632 223333333332 234689999999999996644
No 122
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.77 E-value=0.0056 Score=48.98 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEccc
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (404)
++-.++.||+|+|||.-.+-.+.+....+ .+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 45568899999999977666666655554 359999886
No 123
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.73 E-value=0.013 Score=53.42 Aligned_cols=130 Identities=15% Similarity=0.245 Sum_probs=70.0
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc-c-cHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS-P-TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-p-~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (404)
-+++.|++|+|||+.+...+......+ .+++++. + .+.-+ .+.+..+....++.+.....+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~---------- 162 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ---------- 162 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS----------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC----------
Confidence 367899999999987766554443332 3465554 3 22212 2233333333343332211111
Q ss_pred cCCCeEEeChHHH-HHHHHccCCCcccceEEecccccc---ccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhc
Q 015595 150 HGVHVVSGTPGRV-CDMIKRKTLRTRAIKLLDESDEML---SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 225 (404)
Q Consensus 150 ~~~~iiv~T~~~l-~~~l~~~~~~~~~~vIiDE~h~~~---~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 225 (404)
.|..+ ...+........+++|+|++-... +..+...+..+.....+..-+++++|+...+.......+
T Consensus 163 --------dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 163 --------NPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp --------CHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 11111 123333344577999999997643 333445566666665566677888998766555554443
No 124
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.69 E-value=0.0049 Score=50.71 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
|.-.++.|++|+|||..++-.+......+. +++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~---kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQY---KCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTC---CEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCC---eEEEEeecCC
Confidence 455688999999999887776666655443 4999988753
No 125
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.62 E-value=0.0054 Score=56.64 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
.+.+++.||+|+|||..+-. +...+.....+.+++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a-ia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS-IGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH-HHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHhCCCCeEEEeeH
Confidence 35799999999999976554 3333322222334555543
No 126
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.61 E-value=0.0038 Score=50.71 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
|.-.++.+++|+|||...+-.+......+ .+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g---~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAK---QKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC---CceEEEEeccC
Confidence 44568899999999977666655444443 35899999754
No 127
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.61 E-value=0.013 Score=44.63 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCCchhhHh
Q 015595 68 IKGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~ 87 (404)
....++++.|++|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 34578999999999999553
No 128
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.53 E-value=0.0049 Score=53.97 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 015595 71 RDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~ 89 (404)
.++++.||+|+|||.++-.
T Consensus 68 ~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999977654
No 129
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.52 E-value=0.0056 Score=53.44 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=33.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhh-hhhcCCcEEEEcCCCCchhhHhHH
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVM-PIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~-~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..+|+++.-.+.+.+.+.+.-. .|..+...... .+..++.+++.||+|+|||+.+-.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHH
Confidence 34568888777777776655211 01011111111 123467799999999999976543
No 130
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.51 E-value=0.004 Score=54.94 Aligned_cols=55 Identities=7% Similarity=0.055 Sum_probs=33.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHH-hhhh-hhcCCcEEEEcCCCCchhhHhHH
Q 015595 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQR-AVMP-IIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~-~~~~-~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
...|+++.-.+.+.+.+...-. ++.... .+.. ....+.+++.||+|+|||..+-.
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 3568888777788777765321 111100 0111 11235799999999999976554
No 131
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.50 E-value=0.012 Score=50.43 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
+.+++.||+|+|||..+-..
T Consensus 65 ~~vLl~G~~GtGKT~la~~i 84 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKI 84 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 56899999999999775543
No 132
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.49 E-value=0.016 Score=51.07 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=24.2
Q ss_pred cccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 173 TRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
..+++++||+|.+........+..+++..+...++|+.|
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 567889999999862223445555555544455555533
No 133
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.44 E-value=0.0054 Score=54.06 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=33.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHH-Hhhhh-hhcCCcEEEEcCCCCchhhHhHH
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQ-RAVMP-IIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~-~~~~~-~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..+|++++-.+.+.+.+.+.-. +|.+. +.+.. ....+.+++.||+|+|||..+-.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHH
Confidence 34578888877777777765211 11110 01111 12236799999999999976554
No 134
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0011 Score=60.60 Aligned_cols=57 Identities=12% Similarity=0.265 Sum_probs=39.4
Q ss_pred cccccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhH
Q 015595 29 VEAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~ 88 (404)
..+..+|++.+-.+.+.+.+.+. .+..|-.++...++ ..+.+++.||+|+|||+.+-
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHHH
Confidence 35667899999888888888763 22234444443332 24689999999999996644
No 135
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.39 E-value=0.021 Score=46.34 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCchhhHhHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~ 91 (404)
+.+++.||+|+|||..+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 679999999999997755433
No 136
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.39 E-value=0.013 Score=56.16 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=72.0
Q ss_pred CCcHHHHHhhhhhhc--CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeE
Q 015595 55 KPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (404)
Q Consensus 55 ~~~~~Q~~~~~~~~~--~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~ 132 (404)
.++.-|.+++..+.. ....++.|+-|.|||.+.-+.+.... . .+++..|+.+-+....+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~-~-----~~~vtAP~~~a~~~l~~~~~~--------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA-G-----RAIVTAPAKASTDVLAQFAGE--------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS-S-----CEEEECSSCCSCHHHHHHHGG---------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH-h-----CcEEECCCHHHHHHHHHHhhC---------
Confidence 578999999988776 34578999999999965555444332 1 269999998755433322110
Q ss_pred EEEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEee
Q 015595 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 212 (404)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 212 (404)
.+-+..|+.+. ......+++|||||=.+ -...+..++... ..++||.
T Consensus 240 --------------------~i~~~~Pd~~~-----~~~~~~dlliVDEAAaI----p~pll~~ll~~~----~~v~~~t 286 (671)
T 2zpa_A 240 --------------------KFRFIAPDALL-----ASDEQADWLVVDEAAAI----PAPLLHQLVSRF----PRTLLTT 286 (671)
T ss_dssp --------------------GCCBCCHHHHH-----HSCCCCSEEEEETGGGS----CHHHHHHHHTTS----SEEEEEE
T ss_pred --------------------CeEEeCchhhh-----hCcccCCEEEEEchhcC----CHHHHHHHHhhC----CeEEEEe
Confidence 13344565533 12345799999999875 345566665532 2577888
Q ss_pred ec
Q 015595 213 TL 214 (404)
Q Consensus 213 T~ 214 (404)
|.
T Consensus 287 Tv 288 (671)
T 2zpa_A 287 TV 288 (671)
T ss_dssp EB
T ss_pred cC
Confidence 85
No 137
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.005 Score=55.71 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=38.6
Q ss_pred cccccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 29 VEAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
..+..+|++.+=-+.+.+.+.+. .+..|-.++...++ ..+.+++.||+|+|||+.+-.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLAkA 235 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLAKA 235 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHHHH
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHHHH
Confidence 34567899998777777777653 22334444444332 346799999999999966443
No 138
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0087 Score=54.54 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=36.5
Q ss_pred ccccccccCCCCHHHHHHHHHC---CCCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 30 EAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.+..+|++.+--+.+.+.+.+. .+..|-.++...+ ...+.+++.||+|+|||+.+-.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHHHH
Confidence 4556899988777777777653 1222333333222 2346799999999999966443
No 139
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.32 E-value=0.059 Score=42.89 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
+.+++.||+|+|||..+-..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 57899999999999765543
No 140
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.29 E-value=0.012 Score=53.16 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.+.+++.||+|+|||..+-..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~ 66 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIF 66 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 3568999999999997765433
No 141
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.0019 Score=58.98 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=36.6
Q ss_pred ccccccccCCCCHHHHHHHHHCC---CCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 30 EAITSFDAMGIKDDLLRGIYQYG---FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.+..+|++.+--+.+.+.+.+.- +..|-.|+...+ ..-+.+++.||+|+|||+.+-.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHHHH
Confidence 45567999987777777776532 222333333222 2347899999999999966443
No 142
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0034 Score=57.35 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=37.1
Q ss_pred ccccccccCCCCHHHHHHHHHCCC---CCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhH
Q 015595 30 EAITSFDAMGIKDDLLRGIYQYGF---EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~~~---~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~ 88 (404)
.|..+|++.+--+.+.+.|++.=. ..|-.++... +..-+.+++.||+|+|||+.+-
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHHH
Confidence 455789999888888888876322 1222222222 1235789999999999996644
No 143
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.21 E-value=0.016 Score=49.20 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=29.1
Q ss_pred cccccCCCCHHHHHHHHHCC--CCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 33 TSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
..|+++.-.+.+.+.+.+.- +..+..+.... +...+.+++.||+|+|||..+-.
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHHHHH
Confidence 45667665666666664421 11111111111 12346789999999999976554
No 144
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.15 E-value=0.04 Score=50.34 Aligned_cols=128 Identities=12% Similarity=0.119 Sum_probs=61.2
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc--ccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHh
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~--p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (404)
-+++.+++|+|||+++...+...... +.+++++. |.+.-+ .++++.+....++.+.....+..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~---G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~d--------- 166 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKR---GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEKD--------- 166 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCCC---------
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCCC---------
Confidence 36789999999998877655444332 23466555 233322 34444444444554432211111
Q ss_pred cCCCeEEeChHHH-HHHHHccCCCcccceEEecccccccc-CcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHH
Q 015595 150 HGVHVVSGTPGRV-CDMIKRKTLRTRAIKLLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 223 (404)
Q Consensus 150 ~~~~iiv~T~~~l-~~~l~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 223 (404)
|..+ ...+.......++++|+|.+=..... .....+..+.....+..-++.+.|+...+......
T Consensus 167 ---------p~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~ 233 (443)
T 3dm5_A 167 ---------AIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQAL 233 (443)
T ss_dssp ---------HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHH
T ss_pred ---------HHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHH
Confidence 1111 11122211223577777776433211 22233444444444455566677776544444433
No 145
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.04 E-value=0.026 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
++.+++.||+|+|||..+-..+
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 4679999999999997655433
No 146
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.03 E-value=0.013 Score=52.49 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
.+.+++.||+|+|||..+-..
T Consensus 84 ~~~iLL~GppGtGKT~la~al 104 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAV 104 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHH
Confidence 357999999999999765543
No 147
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.01 E-value=0.027 Score=49.57 Aligned_cols=38 Identities=16% Similarity=0.339 Sum_probs=24.3
Q ss_pred cccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 173 TRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
...++|+||+|.+.... ...+...++..+....+|+.+
T Consensus 110 ~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 110 SFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp SCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEe
Confidence 45788999999875443 345556666655555555544
No 148
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.99 E-value=0.011 Score=49.52 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCchhhHhHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.++.+++.||+|+|||..+...+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 35789999999999997655433
No 149
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.98 E-value=0.037 Score=48.21 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=25.5
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
.....++|+||+|.+.... .+.+...++.-++...+|+.|
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3457899999999986544 345556666544455445444
No 150
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.95 E-value=0.011 Score=52.84 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=25.5
Q ss_pred CcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEee
Q 015595 172 RTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 212 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 212 (404)
....++++||+|.+.... ...+...++..+....+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEeC
Confidence 345788999999875443 3455566666555555665443
No 151
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.95 E-value=0.018 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.+.+++.||+|+|||..+...+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 4578999999999997765443
No 152
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.92 E-value=0.016 Score=53.56 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=32.9
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHH-Hhhhh-hhcCCcEEEEcCCCCchhhHhHH
Q 015595 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQ-RAVMP-IIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~-~~~~~-~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.+...|+++.-.+.+.+.+.+.-. +|.+. +.+.. ....+.+++.||+|+|||..+-.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHH
Confidence 344568887766777676654211 11110 01111 12346799999999999976554
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.90 E-value=0.025 Score=47.43 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=32.3
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHH
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~ 122 (404)
..|.-+++.|++|+|||..+...+...+..+. +++|+.-.. -..+..+.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~---~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE---PGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTC---CEEEEESSS-CHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEEccC-CHHHHHHHHH
Confidence 34667899999999999876665555544332 477776432 2344444444
No 154
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.90 E-value=0.019 Score=52.15 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
.+++++.||+|+|||.++-.
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46899999999999976544
No 155
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.87 E-value=0.033 Score=49.66 Aligned_cols=41 Identities=2% Similarity=0.290 Sum_probs=27.6
Q ss_pred cccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEeeec
Q 015595 173 TRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 214 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 214 (404)
...++|+||+|.+ +......+...++..+....+|+.|..+
T Consensus 134 ~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 134 RYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 5678999999984 4444566667777666666666655544
No 156
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.81 E-value=0.028 Score=48.75 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=31.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHH-HHhhhhh-hcCCcEEEEcCCCCchhhHhHH
Q 015595 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQ-QRAVMPI-IKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~~~~~-~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
...|+++.-.+.+.+.+.+.-. .+.. .+.+..+ ...+.+++.||+|+|||..+-.
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHH
Confidence 3567777666777776654211 0100 0011111 1356899999999999976543
No 157
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.70 E-value=0.051 Score=43.50 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH-HHHHHHHHHHHHccccCeeEEEEEcC----cchHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE-LATQTEKVILAIGDFINIQAHACVGG----KSVGED 144 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (404)
...+++..++|.|||.+++..++..+..+.+ ++++-=.+. ....=...+.++ ++.......+ ....+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~r---V~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKN---VGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCC---EEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCe---EEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHH
Confidence 3578999999999999999888888877654 887732221 000001112222 2222211111 000000
Q ss_pred -HHHHhcCCCeEEeChHHHHHHHHccCCCcccceEEeccccccccC--cHHHHHHHHhhCCCCceEEEEeeecchHHHHH
Q 015595 145 -IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATLPHEILEM 221 (404)
Q Consensus 145 -~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~ 221 (404)
.... -..+....+...-..++++|+||+-...... -...+..++...+...-+|+.+--+++++.+.
T Consensus 101 ~~~~a----------~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 101 DTAAC----------MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp HHHHH----------HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred HHHHH----------HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 0000 1112222222223568999999997543222 23456667777676776776666667766665
Q ss_pred H
Q 015595 222 T 222 (404)
Q Consensus 222 ~ 222 (404)
.
T Consensus 171 A 171 (196)
T 1g5t_A 171 A 171 (196)
T ss_dssp C
T ss_pred C
Confidence 4
No 158
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.64 E-value=0.021 Score=51.70 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.4
Q ss_pred cEEEEcCCCCchhhHhHH
Q 015595 72 DVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~ 89 (404)
.+++.||+|+|||..+-.
T Consensus 46 ~~li~G~~G~GKTtl~~~ 63 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK 63 (389)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999976554
No 159
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.61 E-value=0.042 Score=49.48 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
++.+++.||+|+|||..+-..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l 65 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFV 65 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 467999999999999765543
No 160
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.60 E-value=0.098 Score=43.41 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=15.5
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
.+++.||+|+|||..+-..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999765543
No 161
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.57 E-value=0.022 Score=53.13 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=27.1
Q ss_pred cceEEeccccccccC----------cHHHHHHHHhhCCCCceEEEEeeecch
Q 015595 175 AIKLLDESDEMLSRG----------FKDQIYDVYRYLPPDLQVVLISATLPH 216 (404)
Q Consensus 175 ~~vIiDE~h~~~~~~----------~~~~~~~~~~~~~~~~~~i~~SAT~~~ 216 (404)
.++++||+|.+.... ....+...++.......++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 577899999876421 223445555555556677888888655
No 162
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.32 E-value=0.024 Score=49.73 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=23.2
Q ss_pred ccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 174 RAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 174 ~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
..++|+||+|.+.... ...+...+...+....+|+.|
T Consensus 108 ~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 108 HKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred ceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 5788999999875433 334455555555555555554
No 163
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.23 E-value=0.089 Score=44.70 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.+..+++.|++|+|||..+-.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~ 48 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASR 48 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHH
Confidence 357899999999999966543
No 164
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.22 E-value=0.063 Score=44.45 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=25.9
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
+..|.-+++.||+|+|||..+...+......+. +++++..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~---~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGD---PCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTC---CEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC---eEEEEEc
Confidence 334667889999999999776654444433332 3666653
No 165
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.15 E-value=0.046 Score=50.44 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 015595 71 RDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~ 89 (404)
.++++.||+|+|||..+-.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 4689999999999976554
No 166
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.14 E-value=0.19 Score=42.41 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=30.1
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 32 ITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
...|+++.-.+.+.+.+...- +..+..++... ....+.+++.||+|+|||..+-.
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAKA 64 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHHHH
Confidence 456888876777766654410 10111111100 01135689999999999966543
No 167
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.94 E-value=0.73 Score=41.04 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
++.+++.||+|+|||..+-..
T Consensus 70 ~~~vLl~GppGtGKT~la~~l 90 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGM 90 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357999999999999765543
No 168
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.88 E-value=0.075 Score=47.11 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=25.5
Q ss_pred cccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 173 TRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
...++|+||+|.+.... ...+...++..+....+++.+
T Consensus 110 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp SCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 46888999999875443 455666667666666555543
No 169
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.83 E-value=0.015 Score=57.44 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCchhhHhH
Q 015595 71 RDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~ 88 (404)
+.+++.||+|+|||+.+-
T Consensus 239 ~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999996543
No 170
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.82 E-value=0.086 Score=52.16 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=63.4
Q ss_pred CCeEEEEecchhhHHHHHHHHhh----CCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-cccCCCCCCCCEEEE
Q 015595 270 ITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WARGLDVQQVSLVIN 344 (404)
Q Consensus 270 ~~k~lIf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~~~Gid~p~~~~vi~ 344 (404)
+.+++|.++++.-+...++.+++ .++.+..++|+++..++...++.+.+|..+|+|+|.. +...+++.+++.||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 56899999999988888877755 3789999999999999999999999999999999964 445678888887764
No 171
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.54 E-value=0.075 Score=47.69 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=23.1
Q ss_pred CcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 172 RTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 172 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
....++||||+|.+.... ...+...++..+....+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 345788899999875443 344555555544444444443
No 172
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.43 E-value=0.08 Score=52.27 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=34.4
Q ss_pred cccccccCCCCHHHHHHHHHCCC---CCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhH
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGF---EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~---~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~ 88 (404)
+...|++.+..+.+.+.|.+.-. ..|..++... +...+.+++.||+|+|||+.+-
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHHH
Confidence 44578888888888888876422 1121111111 1224679999999999995543
No 173
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.36 E-value=0.056 Score=48.33 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
.+.+++.||+|+|||..+-..
T Consensus 117 ~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 467999999999999765543
No 174
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.33 E-value=0.13 Score=45.43 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
.++++.||+|+|||..+-..
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 57999999999999765543
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.32 E-value=0.13 Score=48.53 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=25.2
Q ss_pred cccceEEeccccccccC--cHHHHHHHHhhCCCCceEEEEeeec
Q 015595 173 TRAIKLLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATL 214 (404)
Q Consensus 173 ~~~~vIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SAT~ 214 (404)
...+++|||+|.+.... ....+..+++. ...++|+++++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 44678899999986543 22445555544 345577777764
No 176
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.28 E-value=0.031 Score=48.97 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.6
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
++++.||+|+|||..+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l 58 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIAL 58 (319)
T ss_dssp CEEEESSSSSSHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHH
Confidence 5899999999999765543
No 177
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.24 E-value=0.076 Score=49.20 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=31.5
Q ss_pred cccccccCCCCHHHHHHHHHCC--CCCCcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 31 AITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..+|+++.-.+...+.+.+.- +..+..++... +.-.+.+++.||+|+|||+.+-.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~Lara 68 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLARA 68 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHHHH
Confidence 3457888776666666665421 11121111100 01135699999999999976543
No 178
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.22 E-value=0.65 Score=40.07 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
++-+.+.++.|+|||+.+...+......+ .+++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~---~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEec
Confidence 34466789999999977665444333222 2355554
No 179
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.20 E-value=0.16 Score=46.86 Aligned_cols=40 Identities=23% Similarity=0.086 Sum_probs=27.3
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
..|.-++|.|++|+|||..++..+....... +.+++|+..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEC
Confidence 3456679999999999977766655554332 234777765
No 180
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.15 E-value=0.17 Score=43.97 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~ 89 (404)
....+++.|++|+|||.++-.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHH
Confidence 356899999999999966543
No 181
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.98 E-value=0.25 Score=42.68 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=18.6
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhh
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQT 94 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~ 94 (404)
++-+.+.+++|+|||+.+...+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4457889999999998766554443
No 182
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.96 E-value=0.34 Score=43.92 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=16.0
Q ss_pred CcEEE--EcCCCCchhhHhHHHH
Q 015595 71 RDVIA--QAQSGTGKTSMIALTV 91 (404)
Q Consensus 71 ~~~iv--~a~tGsGKT~~~~~~~ 91 (404)
..++| .|++|+|||..+-..+
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~ 73 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTV 73 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHH
Confidence 45788 8999999997655433
No 183
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.91 E-value=0.26 Score=45.54 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=28.1
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
+..|.-+++.|++|+|||..++..+....... +.+++|+..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEEC
Confidence 44456789999999999977766655554432 224777764
No 184
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.84 E-value=0.084 Score=46.49 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=28.2
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
+..|.-+++.|++|+|||..++-.+...... +.+++|+..
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeC
Confidence 4456678999999999997776655555442 335777765
No 185
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.48 E-value=0.16 Score=44.48 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
...+++.||+|+|||..+-.
T Consensus 38 ~~~vll~G~~GtGKT~la~~ 57 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHV 57 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 36799999999999976544
No 186
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.39 E-value=0.092 Score=46.61 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L 113 (404)
|.-++|.+|+|+|||..+...+......+ .+++|+..-..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g---g~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG---GVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEeccccc
Confidence 45678999999999977666555444333 348887765433
No 187
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.27 E-value=0.37 Score=39.98 Aligned_cols=42 Identities=17% Similarity=0.057 Sum_probs=26.4
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHHhhhhcC---CCceeEEEEcc
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSP 109 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~p 109 (404)
..|.-+.+.+|+|+|||..+...+...+... ..+..++++.-
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 3466789999999999987766555433211 01234666654
No 188
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.21 E-value=0.21 Score=45.48 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=62.5
Q ss_pred CCCCeEEEEecchhhHHHHHHHHhh---CCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-cc---cCCCCCCCC
Q 015595 268 LTITQAVIFCNTKRKVDWLTEKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WA---RGLDVQQVS 340 (404)
Q Consensus 268 ~~~~k~lIf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~~---~Gid~p~~~ 340 (404)
..+.++||.+++++-+..+++.++. .++.+..++|+.+..++....+.+..+..+|+|+|+- +. .-++...++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3567899999999999999999988 5789999999999988888888888898999999953 21 124555677
Q ss_pred EEEE
Q 015595 341 LVIN 344 (404)
Q Consensus 341 ~vi~ 344 (404)
.+|+
T Consensus 142 ~iVi 145 (414)
T 3oiy_A 142 FVFV 145 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 189
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.45 E-value=0.45 Score=41.27 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=16.7
Q ss_pred cEEEEcCCCCchhhHhHHHHHh
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
-+.+.+++|+|||+.+...+..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHH
Confidence 4678999999999776654433
No 190
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.36 E-value=4.6 Score=35.37 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
+.++|.|+.|+|||......
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~ 50 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIG 50 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 57899999999999765543
No 191
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.77 E-value=1.1 Score=39.15 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=32.1
Q ss_pred cccceEEecccccc-ccCcHHHHHHHHhhCCCCceEEEEeeecchHHHHHHHhc
Q 015595 173 TRAIKLLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 225 (404)
Q Consensus 173 ~~~~vIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 225 (404)
..+++++|.+-... .......+..+.+.+.++..++.+.++...+.......+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 34677788876543 223444555555555566677788888776655555443
No 192
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.16 E-value=3.2 Score=37.71 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=21.6
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
-+.+.++.|+|||+.+...+...... +.+++++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEee
Confidence 46678999999998766554443322 23455554
No 193
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.04 E-value=0.55 Score=47.28 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCchhhHhHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~ 91 (404)
+++++.||+|+|||..+-..+
T Consensus 192 ~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHH
Confidence 578999999999997655433
No 194
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.92 E-value=0.43 Score=45.19 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.+..+++.||+|+|||..+-.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 356789999999999966543
No 195
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.88 E-value=0.24 Score=43.14 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhh
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
++++++.||+|+|||..+...+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999977665444443
No 196
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.79 E-value=0.83 Score=47.51 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=62.5
Q ss_pred CCCeEEEEecchhhHHHHHHHHhh----CCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-ccccCCCCCCCCEEE
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWARGLDVQQVSLVI 343 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-~~~~Gid~p~~~~vi 343 (404)
.+.+++|.+++..-+.+.++.+++ .++.+..+++..+..++...++.+..|..+|+|+|. .+...+.+.+++.||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 456899999999999888888764 357889999999999999999999999999999995 455557777777666
Q ss_pred E
Q 015595 344 N 344 (404)
Q Consensus 344 ~ 344 (404)
+
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 3
No 197
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.74 E-value=2.9 Score=35.97 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=21.6
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
-+.+.+++|+|||+.+...+......+ .+++++.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~ 133 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVG 133 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 456789999999987665544433332 2355554
No 198
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.60 E-value=0.19 Score=49.98 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
++++.||||+|||..+-..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~al 541 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARAL 541 (758)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999776543
No 199
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.55 E-value=2.2 Score=39.01 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=23.2
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
.+++.++.|+|||+++...+....... +.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~--G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKH--KKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTS--CCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEEe
Confidence 466789999999988776665544431 23466655
No 200
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.46 E-value=1.9 Score=36.01 Aligned_cols=76 Identities=11% Similarity=0.239 Sum_probs=53.9
Q ss_pred hhcCCCCeEEEEecchhhHHHHHHHHhhC----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-----c--ccC
Q 015595 265 YDTLTITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----W--ARG 333 (404)
Q Consensus 265 l~~~~~~k~lIf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-----~--~~G 333 (404)
.....+.++||.+++++.+..+++.++.. ++.+..++|+.+...+...+ .+..+|+|+|+- + ..+
T Consensus 106 ~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~ 181 (249)
T 3ber_A 106 LETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKG 181 (249)
T ss_dssp HHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTT
T ss_pred hcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCC
Confidence 33334567999999999998888777654 77888999988765543332 246789999942 1 145
Q ss_pred CCCCCCCEEEE
Q 015595 334 LDVQQVSLVIN 344 (404)
Q Consensus 334 id~p~~~~vi~ 344 (404)
+++..++.+|+
T Consensus 182 ~~l~~~~~lVi 192 (249)
T 3ber_A 182 FNLRALKYLVM 192 (249)
T ss_dssp CCCTTCCEEEE
T ss_pred cCccccCEEEE
Confidence 67778887775
No 201
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.32 E-value=0.62 Score=46.24 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
..++++.||+|+|||.++-..
T Consensus 207 ~~~vlL~G~~GtGKT~la~~l 227 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGL 227 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHH
Confidence 467999999999999765543
No 202
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.09 E-value=0.25 Score=42.79 Aligned_cols=42 Identities=12% Similarity=0.042 Sum_probs=30.2
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHH
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~ 114 (404)
.+.+.+|+|+|||..++..+...... ..+.+++|+..-.++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhh
Confidence 57899999999998877776665543 1234688888765554
No 203
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.00 E-value=2 Score=34.85 Aligned_cols=72 Identities=13% Similarity=0.334 Sum_probs=52.8
Q ss_pred CCeEEEEecchhhHHHHHHHHhhC-----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-c-----ccCCCCCC
Q 015595 270 ITQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W-----ARGLDVQQ 338 (404)
Q Consensus 270 ~~k~lIf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~-----~~Gid~p~ 338 (404)
..++||.+++++-+..+++.++.. +..+..++|+.+...+.. .+.++..+|+|+|.- + ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999988887664 678899999987665443 344567799999942 1 23466777
Q ss_pred CCEEEE
Q 015595 339 VSLVIN 344 (404)
Q Consensus 339 ~~~vi~ 344 (404)
++.+|+
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777764
No 204
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.50 E-value=0.69 Score=47.81 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=62.8
Q ss_pred CCCCeEEEEecchhhHHHHHHHHhh---CCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-ccc---CCCCCCCC
Q 015595 268 LTITQAVIFCNTKRKVDWLTEKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-WAR---GLDVQQVS 340 (404)
Q Consensus 268 ~~~~k~lIf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~~~---Gid~p~~~ 340 (404)
..+.++||.+++++-+.++++.++. .++.+..++|+.+..++....+.+.++..+|+|+|+- +.. -+++.+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 3467899999999999999999998 4678999999999888888888999999999999942 211 14556778
Q ss_pred EEEE
Q 015595 341 LVIN 344 (404)
Q Consensus 341 ~vi~ 344 (404)
++|+
T Consensus 199 ~lVi 202 (1104)
T 4ddu_A 199 FVFV 202 (1104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 205
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.46 E-value=0.28 Score=48.95 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.++.+++.||+|+|||+.+-.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLara 257 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHH
Confidence 457799999999999966443
No 206
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.33 E-value=0.85 Score=42.69 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=28.5
Q ss_pred HHHHHCCCCCCcHHHHHhhh-hhhcCCcEEEEcCCCCchhhHhHHHHHhhh
Q 015595 46 RGIYQYGFEKPSAIQQRAVM-PIIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 46 ~~l~~~~~~~~~~~Q~~~~~-~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
..+.+.|. +.+.+...+. .+..+..+++.||||||||+..-. ++..+
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~a-L~~~i 284 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNA-IMMFI 284 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHH-HGGGS
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHH-HHhhC
Confidence 44445553 3344444333 345677899999999999966433 34444
No 207
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=89.06 E-value=0.38 Score=37.70 Aligned_cols=121 Identities=11% Similarity=0.102 Sum_probs=72.2
Q ss_pred CcHHHHHhhhhhhcCC--cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEE
Q 015595 56 PSAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (404)
Q Consensus 56 ~~~~Q~~~~~~~~~~~--~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~ 133 (404)
..+-|..++..++... -.+|.+.-|++|+...+..++...... +.++.+++|+..-.....+.... .
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~--Gr~V~vLAp~~~s~~~l~~~~~l----~----- 103 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ--GREVQIIAADRRSQMNMKQDERL----S----- 103 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT--TCCEEEECSTTHHHHHHSCTTTC----S-----
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc--CeEEEEEcCchHHHHHHHhhcCc----C-----
Confidence 4467888888876543 457899999999977544444444333 44799999997755443322211 0
Q ss_pred EEEcCcchHHHHHHHhcCCCeEEeChHHHHHHHHcc-CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEee
Q 015595 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 212 (404)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 212 (404)
..++ +.. .++... .+.+-+++||||+..+........+....+ .+.|+|++--
T Consensus 104 ------------------~~t~-t~~----~ll~~~~~~tp~s~lIVD~AekLS~kE~~~Lld~A~~---~naqvvll~~ 157 (189)
T 2l8b_A 104 ------------------GELI-TGR----RQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAAR---HNVQVLITDS 157 (189)
T ss_dssp ------------------SCSS-STT----TTTTTSCCCCCCCEEEEEESSSHHHHHHHHHHHHHHH---TTCCEEEEES
T ss_pred ------------------ccee-ehh----hhhcCCCCCCCCCEEEEechhhcCHHHHHHHHHHHHh---cCCEEEEeCC
Confidence 0010 110 111122 245667899999999866665555544444 3578887766
Q ss_pred e
Q 015595 213 T 213 (404)
Q Consensus 213 T 213 (404)
+
T Consensus 158 ~ 158 (189)
T 2l8b_A 158 G 158 (189)
T ss_dssp S
T ss_pred c
Confidence 5
No 208
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.06 E-value=0.44 Score=38.72 Aligned_cols=35 Identities=23% Similarity=0.179 Sum_probs=27.3
Q ss_pred CcHHHHHhhhhhhcCCcEEEEcCCCCchhhHhHHH
Q 015595 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~~~ 90 (404)
-+..|..++..+..|.-+.+.||.|+|||+..-+.
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l 42 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAK 42 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHH
Confidence 34456678888888888999999999999764443
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.97 E-value=4.4 Score=37.72 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=23.1
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
.+++.+++|+|||+.+...+......+ .+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G---~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKG---WKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEec
Confidence 467899999999987666554443322 34666654
No 210
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.76 E-value=1.1 Score=42.27 Aligned_cols=59 Identities=10% Similarity=0.182 Sum_probs=54.4
Q ss_pred CCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 015595 270 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD 328 (404)
Q Consensus 270 ~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 328 (404)
.+++||.++.+.-+....+.|+..++.+..+++..+..++..+...+..+..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46899999999999999999999999999999999999888888888899999999994
No 211
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=88.74 E-value=1.5 Score=33.79 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=48.6
Q ss_pred eeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHH---H-hcCCCeEEeChHHHHHHHHcc-CCCcccc
Q 015595 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---L-EHGVHVVSGTPGRVCDMIKRK-TLRTRAI 176 (404)
Q Consensus 102 ~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~iiv~T~~~l~~~l~~~-~~~~~~~ 176 (404)
.++||.|+++.-+....+.+.+. +..+..++|+.+..++... + .....|+|+|. .+... .++..++
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~Gld~~~~~~ 106 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAARGIDIENISL 106 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTTTCCCSCCSE
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcCCchhcCCE
Confidence 46999999999999888888764 4788888988766544332 2 24578999993 33333 4666777
Q ss_pred eEE
Q 015595 177 KLL 179 (404)
Q Consensus 177 vIi 179 (404)
||.
T Consensus 107 Vi~ 109 (163)
T 2hjv_A 107 VIN 109 (163)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 212
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.74 E-value=0.13 Score=43.89 Aligned_cols=55 Identities=13% Similarity=0.260 Sum_probs=28.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHH-HHhhhhh--hcCCcEEEEcCCCCchhhHhH
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQ-QRAVMPI--IKGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~~~~~--~~~~~~iv~a~tGsGKT~~~~ 88 (404)
+..+|++++-.+.+.+.+.+.-. +|+. .+++..+ .-.+.+++.||+|+|||+.+-
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34678888877778777765322 2221 1223221 113459999999999996544
No 213
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.58 E-value=0.28 Score=40.94 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=30.2
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~ 122 (404)
|.-+++.|++|+|||..++-.+.+.+..... .++|++-. .-..+....+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~--~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE--PGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCC--CEEEEESS-SCHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC--Cceeeccc-CCHHHHHHHHH
Confidence 4568999999999997776655554433222 37776643 22344444443
No 214
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.53 E-value=0.56 Score=43.72 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=31.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhh--cCCcEEEEcCCCCchhhHhHH
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..+|+++.-.+.....+.+.-.. +. ....+..+- -.+.+++.+|+|+|||+.+-.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~--~~~~~~~lg~~ip~GvLL~GppGtGKTtLara 83 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LK--NPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 83 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HH--CGGGTTTTSCCCCSEEEEECSSSSSHHHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hh--chhhhhhccCCCCceEEEECCCCCCHHHHHHH
Confidence 456788887666766666542110 00 001111111 124589999999999966543
No 215
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=88.38 E-value=0.82 Score=47.80 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=43.5
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcC---------CCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS---------SREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~---------~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
...+|.|+.|||||.+...-++..+... -...++|+|+=|++-+.++.+++.+.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 3559999999999999888888877532 12347999999999999999888764
No 216
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=88.05 E-value=6.1 Score=31.26 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=49.7
Q ss_pred eeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH----hcCCCeEEeChHHHHHHHHcc-CCCcccc
Q 015595 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRK-TLRTRAI 176 (404)
Q Consensus 102 ~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~-~~~~~~~ 176 (404)
.++||.|+++.-+......+... ++.+..++|+.+..++...+ .....|+|+| +.+... .++..++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~Gldi~~v~~ 125 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASKGLDFPAIQH 125 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHTTCCCCCCSE
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----CchhcCCCcccCCE
Confidence 36999999999999888888765 47788889887665443322 2468899999 344443 5667777
Q ss_pred eEE
Q 015595 177 KLL 179 (404)
Q Consensus 177 vIi 179 (404)
||.
T Consensus 126 VI~ 128 (191)
T 2p6n_A 126 VIN 128 (191)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 217
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.88 E-value=0.44 Score=41.59 Aligned_cols=52 Identities=15% Similarity=0.066 Sum_probs=32.8
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~ 122 (404)
+..|.-++|.|++|+|||..++..+...+..+ .+++|++-- .-..|+...+.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS-SCHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC-CCHHHHHHHHH
Confidence 44566789999999999977666555554433 357877743 22344444443
No 218
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.81 E-value=0.73 Score=41.89 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=20.8
Q ss_pred HHHHHhhhhhh--cCCcEEEEcCCCCchhhHhHH
Q 015595 58 AIQQRAVMPII--KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 58 ~~Q~~~~~~~~--~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+-+...+..++ .+.-++|.||||||||+..-.
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~a 186 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYA 186 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 33444554443 344578999999999966443
No 219
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.62 E-value=4.4 Score=37.53 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.0
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
-+.+.|++|+|||+..-..
T Consensus 295 VI~LVGpNGSGKTTLl~~L 313 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKL 313 (503)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHH
Confidence 4678999999999765543
No 220
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.60 E-value=0.45 Score=43.68 Aligned_cols=44 Identities=16% Similarity=0.362 Sum_probs=30.4
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~ 115 (404)
...++++.|+||+|||......+.+.+..+ ..++++=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g---~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRG---DRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTT---CEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCC---CcEEEEeCCCchhH
Confidence 356899999999999987543444444332 35788888777653
No 221
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=87.58 E-value=0.36 Score=50.43 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=31.9
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccH
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (404)
-+|.|..|||||.+.+.-+.+.+..+..+.++|++||..
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q 42 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCc
Confidence 378999999999998888887776655556799999965
No 222
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.57 E-value=2.2 Score=32.83 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=48.5
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH----hcCCCeEEeChHHHHHHHHcc-CCCccc
Q 015595 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRK-TLRTRA 175 (404)
Q Consensus 101 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~-~~~~~~ 175 (404)
+.++||.|+++.-+......+.+. +..+..++|+.+..++...+ .....|+|+|. .+... .++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G~d~~~~~ 100 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARGIDVQQVS 100 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTTTCCCCSCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhcCCCcccCC
Confidence 346999999999998888888764 47788888887765443322 24578999993 33333 456677
Q ss_pred ceEE
Q 015595 176 IKLL 179 (404)
Q Consensus 176 ~vIi 179 (404)
+||.
T Consensus 101 ~Vi~ 104 (165)
T 1fuk_A 101 LVIN 104 (165)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 223
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.49 E-value=0.91 Score=40.42 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
..++++.||+|+|||.++-.
T Consensus 51 ~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999976554
No 224
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.43 E-value=0.29 Score=39.23 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
++.+++.||||+|||..++.++
T Consensus 34 g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999996655443
No 225
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=87.42 E-value=1.2 Score=42.72 Aligned_cols=59 Identities=5% Similarity=0.141 Sum_probs=53.3
Q ss_pred CCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHH--hcCCCcEEEEcC
Q 015595 270 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEF--RSGTTRVLITTD 328 (404)
Q Consensus 270 ~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~~~~~vlv~t~ 328 (404)
.+++||.+++++-+....+.|+..++.+..++|+.+..++..+...+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 46899999999999999999999999999999999999888888877 467889999996
No 226
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.28 E-value=4 Score=31.66 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=48.2
Q ss_pred eeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHH---H-hcCCCeEEeChHHHHHHHHcc-CCCcccc
Q 015595 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---L-EHGVHVVSGTPGRVCDMIKRK-TLRTRAI 176 (404)
Q Consensus 102 ~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~iiv~T~~~l~~~l~~~-~~~~~~~ 176 (404)
.++||.|+++.-+....+.+... ++.+..++|+....++... + .....|+|+|. .+... .++..++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~Gldi~~~~~ 102 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRGMDIERVNI 102 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCSTTCCGGGCSE
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chhcCcchhhCCE
Confidence 46999999999999888888764 4778888888766554332 2 24578999994 22222 4566677
Q ss_pred eEE
Q 015595 177 KLL 179 (404)
Q Consensus 177 vIi 179 (404)
||.
T Consensus 103 Vi~ 105 (172)
T 1t5i_A 103 AFN 105 (172)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 227
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.11 E-value=0.75 Score=40.21 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=31.9
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcC---------CCc----eeEEEEcccHHH-HHHHHHHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS---------SRE----VQALILSPTREL-ATQTEKVILAI 124 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~---------~~~----~~~lil~p~~~L-~~q~~~~~~~~ 124 (404)
.-+++.|++|+|||..++..+....... ..+ .+++|+.-...+ ..+....++.+
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 4578999999999987776655432211 111 568888754332 34444444443
No 228
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.83 E-value=0.62 Score=41.37 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=28.2
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEccc
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (404)
.++-+++.+++|+|||..++..+......+. +++|+..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~---~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEeCC
Confidence 3466899999999999887776665554433 47777763
No 229
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.70 E-value=0.59 Score=41.39 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=27.9
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEccc
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (404)
.|+-+++.+++|+|||..++..+......+ .+++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG---GIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECC
Confidence 456689999999999988777665555443 347777654
No 230
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.70 E-value=0.39 Score=37.94 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.|+-+++.||+|+|||+..-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 466788999999999976544
No 231
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.46 E-value=0.75 Score=41.52 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=29.0
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
.+.++++.|+||+|||...-..+...... +.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~---~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ---GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC---CCEEEEEeCCcC
Confidence 56789999999999997766555444433 345777777654
No 232
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.31 E-value=0.42 Score=38.92 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=24.6
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
..|.-+++.+++|+|||..+...+. .. +.+++++.-
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~---~~~v~~i~~ 53 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LS---GKKVAYVDT 53 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HH---CSEEEEEES
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---Hc---CCcEEEEEC
Confidence 3456789999999999977665544 22 234676654
No 233
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=86.25 E-value=1.3 Score=49.82 Aligned_cols=50 Identities=18% Similarity=0.107 Sum_probs=33.8
Q ss_pred CHHHHHHHHHCCCCCCcHHHHH----hhhhhhcCCcEEEEcCCCCchhhHhHHHH
Q 015595 41 KDDLLRGIYQYGFEKPSAIQQR----AVMPIIKGRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~Q~~----~~~~~~~~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.+.+.+.+.+.++ .+.+.+.. ..+.+...+.+++.||||+|||.++-..+
T Consensus 891 ~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La 944 (2695)
T 4akg_A 891 VQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVI 944 (2695)
T ss_dssp HHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHH
Confidence 3445666667777 56666632 23334456789999999999998765443
No 234
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=86.08 E-value=2.2 Score=34.57 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=48.4
Q ss_pred eeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH---h-cCCCeEEeChHHHHHHHHcc-CCCcccc
Q 015595 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRK-TLRTRAI 176 (404)
Q Consensus 102 ~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~T~~~l~~~l~~~-~~~~~~~ 176 (404)
.++||.|+++.-+....+.+.+. +..+..++|+.+...+...+ . ...+|+|+| +.+... .++..++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~Gidi~~v~~ 102 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAARGLDIPQVDL 102 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTCSSSCCCBSE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----ChhhcCCCCccCcE
Confidence 46999999999998888888765 47788889987765543332 2 457899999 333433 4566677
Q ss_pred eE
Q 015595 177 KL 178 (404)
Q Consensus 177 vI 178 (404)
||
T Consensus 103 Vi 104 (212)
T 3eaq_A 103 VV 104 (212)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 235
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.06 E-value=0.37 Score=40.72 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=18.2
Q ss_pred hhcCCcEEEEcCCCCchhhHhHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..|.-+.+.||+|||||+..-.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~ 44 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIAS 44 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHH
Confidence 45677789999999999976444
No 236
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.04 E-value=0.44 Score=38.29 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCCchhhHhHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.++.+++.|++|||||+++-...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 46678999999999997765433
No 237
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=86.00 E-value=0.57 Score=37.69 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=17.2
Q ss_pred cEEEEcCCCCchhhHhHHHHHhh
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQT 94 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~ 94 (404)
-.++.|++|||||..+...+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 36899999999998765544443
No 238
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=85.93 E-value=4.7 Score=27.89 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=72.5
Q ss_pred EEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc--ccCC-----CCCCCCEEEEc
Q 015595 273 AVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVW--ARGL-----DVQQVSLVINY 345 (404)
Q Consensus 273 ~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~--~~Gi-----d~p~~~~vi~~ 345 (404)
.++|.+..+....+.+.++..|..+..+.++.+.+.|.+-++.|.....++--.-+.- -..+ -.|.++.|++.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvviv 84 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIV 84 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 4677777888888999999999999999999999999999999976554433221110 0000 14666766665
Q ss_pred cCCC--ChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHccc
Q 015595 346 DLPN--NRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQ 392 (404)
Q Consensus 346 ~~p~--s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (404)
.... =...|+.-.- . +.-.+++++...+.+--+.-++.++..
T Consensus 85 ttddkewikdfieeak---e--rgvevfvvynnkdddrrkeaqqefrsd 128 (162)
T 2l82_A 85 TTDDKEWIKDFIEEAK---E--RGVEVFVVYNNKDDDRRKEAQQEFRSD 128 (162)
T ss_dssp ECCCHHHHHHHHHHHH---H--TTCEEEEEEECSCHHHHHHHHHHHCCS
T ss_pred ecCcHHHHHHHHHHHH---h--cCcEEEEEecCCCchhHHHHHHHhhhc
Confidence 4221 0122332221 1 125677777777777767777777654
No 239
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.91 E-value=0.41 Score=40.21 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=32.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhh--cCCcEEEEcCCCCchhhHhHH
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..+|+++.-.+.+...+++.... .. ....+..+. -.+.+++.||+|+|||..+-.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 68 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHHHH
Confidence 445788887677776666553210 00 112222221 124589999999999966443
No 240
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.88 E-value=0.92 Score=42.31 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=23.5
Q ss_pred cHHHHHhhhhhhcCCcEEEEcCCCCchhhHhH
Q 015595 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~iv~a~tGsGKT~~~~ 88 (404)
...-..+...+..+.++++.||+|+|||..+-
T Consensus 28 ~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 28 SHAIRLCLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHHHHhcCCeeEeecCchHHHHHHHH
Confidence 33334455556678899999999999996544
No 241
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.81 E-value=3.6 Score=34.00 Aligned_cols=72 Identities=8% Similarity=0.170 Sum_probs=52.5
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc-cCCCCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VWA-RGLDVQQ 338 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-----~~~-~Gid~p~ 338 (404)
.+.++||.+++++-+.++++.++.. ++.+..++|+.+.......+.. ..+|+|+|+ .+. ..+++..
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 3567999999999998887777653 7888999999887765544432 478999994 222 2457778
Q ss_pred CCEEEE
Q 015595 339 VSLVIN 344 (404)
Q Consensus 339 ~~~vi~ 344 (404)
++++|+
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888774
No 242
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=85.80 E-value=4.8 Score=38.11 Aligned_cols=87 Identities=9% Similarity=0.071 Sum_probs=58.2
Q ss_pred hHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH----hcCCCeEEeChHHH
Q 015595 87 IALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRV 162 (404)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l 162 (404)
.+..+...+.....+.++||.|+++.-+..+.+.+.+... .+..+..++++.....+...+ ....+|+|+|.
T Consensus 325 ~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~--- 400 (563)
T 3i5x_A 325 AVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD--- 400 (563)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG---
T ss_pred HHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc---
Confidence 3333444444444556799999999999999988887532 256788888887765443322 24688999994
Q ss_pred HHHHHcc-CCCcccceEE
Q 015595 163 CDMIKRK-TLRTRAIKLL 179 (404)
Q Consensus 163 ~~~l~~~-~~~~~~~vIi 179 (404)
.+... .++.+++||.
T Consensus 401 --~~~~GiDip~v~~VI~ 416 (563)
T 3i5x_A 401 --VGARGMDFPNVHEVLQ 416 (563)
T ss_dssp --GGTSSCCCTTCCEEEE
T ss_pred --hhhcCCCcccCCEEEE
Confidence 44443 5666788774
No 243
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.79 E-value=0.82 Score=40.02 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhc---CCCceeEEEEcccH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDT---SSREVQALILSPTR 111 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~---~~~~~~~lil~p~~ 111 (404)
|.-+++.|++|+|||..++..+...... +..+.+++|+.-..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4567899999999998777665554322 11134577776543
No 244
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=85.79 E-value=0.46 Score=38.34 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=19.0
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~ 90 (404)
+..++-+++.||+|+|||+.+-..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHH
Confidence 456778899999999999765543
No 245
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=85.71 E-value=4.2 Score=32.40 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=49.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC-----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-----ccc-CCCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----WAR-GLDVQ 337 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-----~~~-Gid~p 337 (404)
.+.++||.+++++.+..+++.++.. +..+..++|+.+...... .+ .+..+|+|+|+- +.. .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3457999999999999888877653 567888898877554322 22 356789999952 222 34666
Q ss_pred CCCEEEE
Q 015595 338 QVSLVIN 344 (404)
Q Consensus 338 ~~~~vi~ 344 (404)
.++.+|+
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777764
No 246
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=85.69 E-value=3.7 Score=31.91 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=48.5
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH----hcCCCeEEeChHHHHHHHHcc-CCCccc
Q 015595 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRK-TLRTRA 175 (404)
Q Consensus 101 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~-~~~~~~ 175 (404)
+.++||.|+++..+......+.+. +..+..++|+.+..++...+ .....|+|+|. .+... .++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~Gid~~~~~ 104 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCARGIDVKQVT 104 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCTTTCCTTEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhcCCCcccCC
Confidence 457999999999998888877653 57788889887765543332 24578999993 22322 455667
Q ss_pred ceEE
Q 015595 176 IKLL 179 (404)
Q Consensus 176 ~vIi 179 (404)
+||.
T Consensus 105 ~Vi~ 108 (175)
T 2rb4_A 105 IVVN 108 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7763
No 247
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=85.67 E-value=2.1 Score=33.76 Aligned_cols=71 Identities=11% Similarity=0.151 Sum_probs=41.6
Q ss_pred CceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHH---HHH-hcCCCeEEeChHHHHHHHHcc-CCCcc
Q 015595 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI---RKL-EHGVHVVSGTPGRVCDMIKRK-TLRTR 174 (404)
Q Consensus 100 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iiv~T~~~l~~~l~~~-~~~~~ 174 (404)
.+.++||.|+++.-+......++.. ++.+..++|+.+..++. ..+ .....|+|+|. .+... .++..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~Gldi~~~ 115 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARGLDISNV 115 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC-----------CCCSB
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhhcCCCcccC
Confidence 3456999999999998888888764 47788888876544332 222 24678999993 23332 45666
Q ss_pred cceEE
Q 015595 175 AIKLL 179 (404)
Q Consensus 175 ~~vIi 179 (404)
++||.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77664
No 248
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=85.42 E-value=1.1 Score=41.90 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=20.8
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHHhhhh
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~~~~~~ 96 (404)
.++.+++|.|+||||||...-..+...+.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34568999999999999765554444443
No 249
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.29 E-value=0.44 Score=41.71 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCchhhHhHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~ 91 (404)
+-++|.||||+|||.++...+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458899999999997665433
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=85.28 E-value=0.5 Score=38.29 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.|.-+++.||+|+|||...-.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~ 27 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREA 27 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHH
Confidence 356688999999999976544
No 251
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=85.22 E-value=2.1 Score=36.88 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
..++++.||+|+|||..+-.
T Consensus 50 ~~~vll~G~~GtGKT~la~~ 69 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARR 69 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 56799999999999976554
No 252
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=85.14 E-value=0.39 Score=38.18 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=17.9
Q ss_pred hhcCCcEEEEcCCCCchhhHhHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..|.-+++.|++|||||+.+-.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~ 28 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHH
Confidence 34566789999999999976443
No 253
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.07 E-value=0.97 Score=37.01 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=20.7
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcC
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTS 98 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~ 98 (404)
++++.++.|+|||..++..+......+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 578999999999988776665555443
No 254
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.07 E-value=0.56 Score=36.89 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=18.1
Q ss_pred hcCCcEEEEcCCCCchhhHhHHH
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~ 90 (404)
..++.+++.|++|+|||.++-..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHH
Confidence 34567999999999999775543
No 255
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.06 E-value=2.2 Score=45.20 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=31.5
Q ss_pred CCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEee
Q 015595 170 TLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 212 (404)
Q Consensus 170 ~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 212 (404)
.+.+.+++|+||+-.-.+......+.+.++...+++-+|.++-
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAH 1274 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAH 1274 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECS
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 3456678999999988888777888887777666655555543
No 256
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=85.06 E-value=0.52 Score=37.24 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.+.+++.|++|||||.++-...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999997766543
No 257
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=85.01 E-value=1.7 Score=40.27 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=53.6
Q ss_pred HHHHHhhhhcCCCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCC
Q 015595 258 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 337 (404)
Q Consensus 258 ~~~l~~~l~~~~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p 337 (404)
...+...++. .+.+++|.|.+...++.+.+.|.+.++.+...... . .+. ...+.|+...+..|+.+|
T Consensus 371 ~~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~--~g~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 371 LDALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EAS--DRGRYLMIGAAEHGFVDT 437 (483)
T ss_dssp THHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCC--TTCEEEEESCCCSCEEET
T ss_pred HHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcC--CCcEEEEEcccccCcccC
Confidence 3556666643 24689999999999999999999988765543221 0 112 235667778899999999
Q ss_pred CCCEEEEc
Q 015595 338 QVSLVINY 345 (404)
Q Consensus 338 ~~~~vi~~ 345 (404)
....+++.
T Consensus 438 ~~klaVIT 445 (483)
T 3hjh_A 438 VRNLALIC 445 (483)
T ss_dssp TTTEEEEE
T ss_pred CCCEEEEE
Confidence 98887764
No 258
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.00 E-value=2.7 Score=34.40 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=51.1
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC-----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-c-----ccCCCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W-----ARGLDVQ 337 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~-----~~Gid~p 337 (404)
.+.++||.+++++.+..+++.++.. ++.+..++|+.+...+...+ ...+|+|+|+- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 4568999999999999998888764 56788899988766544332 35789999952 2 1345666
Q ss_pred CCCEEEE
Q 015595 338 QVSLVIN 344 (404)
Q Consensus 338 ~~~~vi~ 344 (404)
.++.+|.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 7777664
No 259
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=84.97 E-value=4.6 Score=35.98 Aligned_cols=72 Identities=13% Similarity=0.357 Sum_probs=53.2
Q ss_pred CCeEEEEecchhhHHHHHHHHhhC-----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-c-----ccCCCCCC
Q 015595 270 ITQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W-----ARGLDVQQ 338 (404)
Q Consensus 270 ~~k~lIf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~-----~~Gid~p~ 338 (404)
+.++||.|+++..+..+++.++.. +..+..++|+.+....... +..+..+|+|+|.- + ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999988887664 6788999999876655443 34567789999942 2 23456777
Q ss_pred CCEEEE
Q 015595 339 VSLVIN 344 (404)
Q Consensus 339 ~~~vi~ 344 (404)
++.||+
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 787774
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.95 E-value=0.81 Score=40.76 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (404)
+.-++|.+++|+|||..++..+......+ .+++|+..-.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g---~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAG---GTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCC---CeEEEEECCC
Confidence 45678999999999987776666554433 2477777543
No 261
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=84.70 E-value=0.41 Score=37.29 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=15.1
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
-+++.|++|||||+++-..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3688999999999765543
No 262
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.63 E-value=0.7 Score=42.44 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=29.0
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
+..|.-++|.|++|+|||..++-.+.+.+.. +.+++|++-
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSl 233 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSL 233 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 3445668999999999998777666665544 335888765
No 263
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.45 E-value=0.51 Score=40.81 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=15.6
Q ss_pred cEEEEcCCCCchhhHhHHHH
Q 015595 72 DVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~ 91 (404)
-++|.||||+|||..+...+
T Consensus 5 ~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 46889999999997655443
No 264
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=84.43 E-value=0.88 Score=37.84 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=19.2
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
+-.|.-+.+.||+|+|||+.....+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3456778999999999997665544
No 265
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.42 E-value=0.56 Score=41.79 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=18.5
Q ss_pred hhcCCcEEEEcCCCCchhhHhHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..|..+++.||||||||+..-.
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~ 194 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKA 194 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHHHH
Confidence 44678899999999999965443
No 266
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.30 E-value=0.53 Score=40.66 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchhhHhHHHH
Q 015595 72 DVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~ 91 (404)
-++|.||||+|||..+...+
T Consensus 12 ~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 46889999999997765443
No 267
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=84.28 E-value=0.59 Score=37.57 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCchhhHhHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~ 90 (404)
.++-+.+.||+|+|||+..-+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKL 24 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4667899999999999765543
No 268
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=84.20 E-value=2.9 Score=34.42 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=44.7
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cccc-CCCCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VWAR-GLDVQQ 338 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-----~~~~-Gid~p~ 338 (404)
.+.++||.+++++.+..+++.++.. +..+..++|+.+... ..+.+..+..+|+|+|+ .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999998888764 456777777654332 23344556689999993 2233 356667
Q ss_pred CCEEEE
Q 015595 339 VSLVIN 344 (404)
Q Consensus 339 ~~~vi~ 344 (404)
++.+|+
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777764
No 269
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.16 E-value=0.53 Score=39.56 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=14.7
Q ss_pred EEEEcCCCCchhhHhHHH
Q 015595 73 VIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~ 90 (404)
+++.||+|||||..+...
T Consensus 4 i~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHH
Confidence 688999999999765543
No 270
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=84.14 E-value=0.94 Score=40.02 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=26.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcC---CCceeEEEEcccH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTR 111 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~p~~ 111 (404)
.-+++.|++|+|||..+...+....... ..+.+++|+.-..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3468999999999987766555533321 1234577777543
No 271
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=84.07 E-value=0.91 Score=39.85 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=17.7
Q ss_pred hhcCCcEEEEcCCCCchhhHhH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~ 88 (404)
+..|..+.+.||||||||+..-
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIK 189 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHH
Confidence 3457889999999999996533
No 272
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=83.99 E-value=0.61 Score=37.55 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCchhhHhHH
Q 015595 68 IKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
..|.-+.+.||+|||||+.+-.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3566788999999999976554
No 273
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=83.96 E-value=1.6 Score=40.34 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.++++++.||+|+|||..+-.
T Consensus 62 ~~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHH
Confidence 346799999999999976654
No 274
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.94 E-value=0.48 Score=38.16 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 015595 71 RDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~ 89 (404)
+.+++.||+|+|||..+..
T Consensus 59 n~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp SEEEEESCGGGCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3589999999999976543
No 275
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.88 E-value=2.7 Score=48.05 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=41.4
Q ss_pred CHHHHHHHHHCCCCCCcHHHHH----hhhhhhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEccc
Q 015595 41 KDDLLRGIYQYGFEKPSAIQQR----AVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (404)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~Q~~----~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (404)
.+.+.+.+.+.|+ ++.+.+.. .++.+...+.+++.||||+|||.++-......-.-.+......++-|.
T Consensus 874 ~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPK 946 (3245)
T 3vkg_A 874 RKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPK 946 (3245)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTT
T ss_pred HHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCC
Confidence 3455666667787 67776643 233344467899999999999987664433221111223345556664
No 276
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=83.85 E-value=0.63 Score=36.44 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
+.-+++.|++|||||+++-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34588999999999976554
No 277
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=83.80 E-value=0.58 Score=41.05 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=20.5
Q ss_pred hhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 63 AVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 63 ~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+...+..++++++.||+|+|||..+-.
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHHHH
Confidence 334455678999999999999966543
No 278
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=83.74 E-value=0.6 Score=39.82 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=32.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHhhhhhh--cCCcEEEEcCCCCchhhHhHH
Q 015595 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..+|+++.-.+.+.+.+.+.... .. ....+..+. -.+.+++.+|+|+|||..+-.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~ 92 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 92 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHHHH
Confidence 456788887777777776653210 00 012222211 124489999999999966443
No 279
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.62 E-value=6.8 Score=35.20 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=51.3
Q ss_pred CCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH----hcCCCeEEeChHHHHHHHHcc-CCCc
Q 015595 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRK-TLRT 173 (404)
Q Consensus 99 ~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~-~~~~ 173 (404)
..+.++||.|+++.-+....+.+.+. +..+..++|+....++...+ ....+|+|+| +.+... +++.
T Consensus 274 ~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~Gidip~ 344 (417)
T 2i4i_A 274 GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAARGLDISN 344 (417)
T ss_dssp CTTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHTTSCCCC
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----ChhhcCCCccc
Confidence 34567999999999999888888764 47788888887765443322 2467899999 445544 5667
Q ss_pred ccceEE
Q 015595 174 RAIKLL 179 (404)
Q Consensus 174 ~~~vIi 179 (404)
.++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 777764
No 280
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=83.59 E-value=1.7 Score=36.97 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=21.2
Q ss_pred hhhcCCcEEEEcCCCCchhhHhHHHHH
Q 015595 66 PIIKGRDVIAQAQSGTGKTSMIALTVC 92 (404)
Q Consensus 66 ~~~~~~~~iv~a~tGsGKT~~~~~~~~ 92 (404)
-+..|.-+++.||+|+|||+.+...+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 355677889999999999987665554
No 281
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=83.27 E-value=0.7 Score=36.54 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCchhhHhHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~ 90 (404)
.+..+++.|++|||||.++-..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3567899999999999775543
No 282
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=83.15 E-value=0.73 Score=36.94 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.++-+++.||+|+|||...-.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHH
Confidence 567789999999999976444
No 283
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=83.11 E-value=0.85 Score=36.20 Aligned_cols=17 Identities=35% Similarity=0.776 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchhhHh
Q 015595 71 RDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~ 87 (404)
+-++++||.|+|||.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999653
No 284
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=82.99 E-value=0.77 Score=35.70 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..+++.|++|||||+++-.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45689999999999976544
No 285
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=82.84 E-value=2.5 Score=37.70 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
..++++.||+|+|||.++-.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 45799999999999976554
No 286
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=82.78 E-value=1.2 Score=38.24 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=26.4
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
+..|.-+++.|++|+|||..+...+....... +.+++++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeC
Confidence 44577789999999999977665444433332 223666653
No 287
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=82.56 E-value=1 Score=37.90 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=29.4
Q ss_pred HHHHHHHHCCCCCCcHHHH-HhhhhhhcCC-----cEEEEcCCCCchhhHhHHH
Q 015595 43 DLLRGIYQYGFEKPSAIQQ-RAVMPIIKGR-----DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 43 ~~~~~l~~~~~~~~~~~Q~-~~~~~~~~~~-----~~iv~a~tGsGKT~~~~~~ 90 (404)
.+.+-|+-.|+ .+.+- .++..+++++ .+++.||+|+|||+.+...
T Consensus 74 ~i~~~l~~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~al 124 (267)
T 1u0j_A 74 RIYKILELNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAI 124 (267)
T ss_dssp HHHHHHHHTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 45677766776 34442 2344555543 5899999999999776643
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=82.47 E-value=0.71 Score=36.12 Aligned_cols=18 Identities=17% Similarity=0.280 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchhhHhHH
Q 015595 72 DVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~ 89 (404)
-+++.|++|||||+.+-.
T Consensus 4 ~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 368999999999976554
No 289
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=82.35 E-value=0.79 Score=36.81 Aligned_cols=21 Identities=43% Similarity=0.536 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.|.-+.+.||+|+|||+..-.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHH
Confidence 466678999999999976544
No 290
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=82.34 E-value=3 Score=34.20 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=48.5
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-c----cc--CCCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W----AR--GLDVQ 337 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~----~~--Gid~p 337 (404)
.+.++||.+++++.+..+++.++.. ++.+..++|+.+.......+ +..+|+|+|.- + .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3567999999999999988888764 46788888886544433222 46789999942 2 12 36667
Q ss_pred CCCEEEE
Q 015595 338 QVSLVIN 344 (404)
Q Consensus 338 ~~~~vi~ 344 (404)
.++.+|+
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777764
No 291
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=82.32 E-value=1.6 Score=41.10 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCC-CceeEEEEccc
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPT 110 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~p~ 110 (404)
..+++|.|.||||||.+.-..+...+.... ...+++++=|.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 457899999999999776665655554433 23444444443
No 292
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=82.32 E-value=0.72 Score=35.75 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchhhHhHH
Q 015595 72 DVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~ 89 (404)
.+++.|++|||||+++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999977554
No 293
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=82.32 E-value=2.5 Score=34.39 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=44.8
Q ss_pred CCCCeEEEEecchhhHHHHHHHHhhC----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc------ccCCCCC
Q 015595 268 LTITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVW------ARGLDVQ 337 (404)
Q Consensus 268 ~~~~k~lIf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~------~~Gid~p 337 (404)
..+.++||.++++..+..+++.++.. +..+..++|+.+...... .+. ..+|+|+|.-. ...+++.
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~~~iiv~Tp~~l~~~~~~~~~~~~ 154 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLR--DAQIVVGTPGRVFDNIQRRRFRTD 154 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCC--CCCEEEECHHHHHHHHHhCCcchh
Confidence 34568999999999999888877653 667888888865443322 222 37899999421 2346666
Q ss_pred CCCEEEE
Q 015595 338 QVSLVIN 344 (404)
Q Consensus 338 ~~~~vi~ 344 (404)
.++.+|+
T Consensus 155 ~~~~iVi 161 (224)
T 1qde_A 155 KIKMFIL 161 (224)
T ss_dssp TCCEEEE
T ss_pred hCcEEEE
Confidence 7777764
No 294
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.30 E-value=0.74 Score=39.65 Aligned_cols=19 Identities=21% Similarity=0.080 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 015595 71 RDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~ 89 (404)
+.+++.||+|+|||..+-.
T Consensus 37 ~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp SEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4678899999999976554
No 295
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=82.24 E-value=1.5 Score=46.41 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=29.7
Q ss_pred ccCCCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 168 RKTLRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 168 ~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
+..+.+.+++|+||+-..++......+...+..+.++.-+|+.|
T Consensus 567 RAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 567 RALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp HHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 34466778999999998888876777766665544444344443
No 296
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=82.19 E-value=0.51 Score=36.90 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+|.-+.+.||+|||||+.+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456678999999999966443
No 297
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=81.93 E-value=5.2 Score=31.83 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=50.7
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC--CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc-cCCCCCCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VWA-RGLDVQQVS 340 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-----~~~-~Gid~p~~~ 340 (404)
.+.+++|.++++..+..+++.++.. +..+..++|+.+.......+. ...+|+|+|. .+. ..+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3567999999999999999998875 457788888876554433332 2578999994 122 246677788
Q ss_pred EEEE
Q 015595 341 LVIN 344 (404)
Q Consensus 341 ~vi~ 344 (404)
.+|.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 298
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=81.57 E-value=0.96 Score=35.60 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=24.9
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHH
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 124 (404)
++|.|++|||||..+...+. . +.+++|+......-.++.+.+..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~----~---~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG----D---APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC----S---CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHh----c---CCCeEEEecCCCCCHHHHHHHHHH
Confidence 58999999999966554332 1 234778777554444555545443
No 299
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=81.57 E-value=0.69 Score=41.39 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCchhhHhHH
Q 015595 68 IKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
..+..+++.||||||||+..-.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~ 155 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIAS 155 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3566789999999999976544
No 300
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=81.41 E-value=8.4 Score=35.36 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=23.3
Q ss_pred hhhhhhcCCcEEEEcCCCCchhhHhHHHHHh
Q 015595 63 AVMPIIKGRDVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 63 ~~~~~~~~~~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
.+..+.+|+..++.++.|+|||..+...+.+
T Consensus 144 ~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 144 LLAPYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHSCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHhhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 3445567888999999999999776654443
No 301
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=81.34 E-value=0.87 Score=39.65 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=15.9
Q ss_pred cEEEEcCCCCchhhHhHHHH
Q 015595 72 DVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~ 91 (404)
.++|.||||+|||..+...+
T Consensus 7 ~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999997765433
No 302
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=81.24 E-value=0.75 Score=40.84 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.+..+++.||||||||+..-.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~ 142 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAA 142 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 455689999999999966443
No 303
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.15 E-value=0.9 Score=35.91 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..+++.|++|||||+.+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999977554
No 304
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=81.07 E-value=1 Score=36.82 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCCchhhHhHH
Q 015595 68 IKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
..|+-+.+.||+|+|||+..-+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~ 42 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKK 42 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4577789999999999966544
No 305
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=81.05 E-value=0.98 Score=35.75 Aligned_cols=19 Identities=32% Similarity=0.651 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 015595 71 RDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~ 89 (404)
+-+.+.||+|+|||+..-.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~ 20 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CCEEEESSSSSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3478999999999976443
No 306
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=80.78 E-value=1.7 Score=34.17 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
+..+++.|++|||||+.+-...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 4567899999999997765533
No 307
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=80.68 E-value=0.96 Score=39.68 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=15.8
Q ss_pred cEEEEcCCCCchhhHhHHHH
Q 015595 72 DVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~ 91 (404)
-++|.||||||||..+...+
T Consensus 9 lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHH
Confidence 47899999999997765433
No 308
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=80.46 E-value=0.73 Score=36.35 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
+..+++.|++|||||+.+-..
T Consensus 4 g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 446889999999999776543
No 309
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=80.24 E-value=1 Score=36.06 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.+.-+++.|++|||||+.+-.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456788999999999976554
No 310
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=80.20 E-value=11 Score=35.70 Aligned_cols=85 Identities=9% Similarity=0.069 Sum_probs=57.1
Q ss_pred HHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH----hcCCCeEEeChHHHHHHH
Q 015595 91 VCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMI 166 (404)
Q Consensus 91 ~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l 166 (404)
+...+.....+.++||.|+++.-+..+.+.+.+... .+..+..++|+.....+...+ ....+|+|+|. .+
T Consensus 278 l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~ 351 (579)
T 3sqw_A 278 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG 351 (579)
T ss_dssp HHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG
T ss_pred HHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh
Confidence 334444434456799999999999999998887532 256788888887765443322 24678999994 44
Q ss_pred Hcc-CCCcccceEEec
Q 015595 167 KRK-TLRTRAIKLLDE 181 (404)
Q Consensus 167 ~~~-~~~~~~~vIiDE 181 (404)
... .++.+++||.-.
T Consensus 352 ~~GiDip~v~~VI~~~ 367 (579)
T 3sqw_A 352 ARGMDFPNVHEVLQIG 367 (579)
T ss_dssp TSSCCCTTCCEEEEES
T ss_pred hcCCCcccCCEEEEcC
Confidence 443 566778887433
No 311
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=80.17 E-value=6.1 Score=32.09 Aligned_cols=72 Identities=7% Similarity=0.132 Sum_probs=47.3
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC---CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-c-----ccCCCCCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY---NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W-----ARGLDVQQV 339 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~-----~~Gid~p~~ 339 (404)
.+.++||.+++++-+..+++.++.. +..+..++|+.+...+... +. ...+|+|+|+- + ...+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999999888774 6678888887655443322 22 35789999941 1 235677778
Q ss_pred CEEEE
Q 015595 340 SLVIN 344 (404)
Q Consensus 340 ~~vi~ 344 (404)
+.+|+
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87764
No 312
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=80.00 E-value=3 Score=39.82 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=16.7
Q ss_pred CcEEEEcCCCCchhhHhHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~ 91 (404)
+-+.|.|+.|.|||..+..++
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 457899999999997766544
No 313
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=79.96 E-value=0.94 Score=35.31 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..+++.|++|||||+.+-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45688999999999976554
No 314
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=79.93 E-value=0.67 Score=37.40 Aligned_cols=27 Identities=19% Similarity=0.009 Sum_probs=19.6
Q ss_pred hhhhhhcCCcEEEEcCCCCchhhHhHH
Q 015595 63 AVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 63 ~~~~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.++.+..+.-+.+.|++|||||+.+-.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHH
Confidence 344555566678999999999976544
No 315
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=79.87 E-value=19 Score=29.67 Aligned_cols=71 Identities=7% Similarity=0.111 Sum_probs=48.9
Q ss_pred CCeEEEEecchhhHHHHHHHHhhC----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-c----c-cCCCCCCC
Q 015595 270 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W----A-RGLDVQQV 339 (404)
Q Consensus 270 ~~k~lIf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~----~-~Gid~p~~ 339 (404)
+.++||.+++++.+..+++.++.. ++.+..++|+.+.......+ ....+|+|+|+- + . ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 458999999999999888887653 46777888887654433222 346789999942 2 1 23567777
Q ss_pred CEEEE
Q 015595 340 SLVIN 344 (404)
Q Consensus 340 ~~vi~ 344 (404)
+.+|+
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77764
No 316
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=79.79 E-value=1.3 Score=41.58 Aligned_cols=41 Identities=10% Similarity=0.010 Sum_probs=28.4
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
+..|.-++|.|++|+|||..++-.+.+..... +.+++|+.-
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~ 279 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAML 279 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEES
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEec
Confidence 34456689999999999987776666555431 234777764
No 317
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=79.76 E-value=1.8 Score=37.73 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=21.6
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
-+.+.+++|+|||+.+...+......+ .+++++-
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELG---YKVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 467899999999987665444333322 3466553
No 318
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=78.97 E-value=1.1 Score=34.57 Aligned_cols=20 Identities=20% Similarity=0.327 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
+.+++.|+.|||||+++-..
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46889999999999876653
No 319
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=78.92 E-value=1.2 Score=35.90 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=17.0
Q ss_pred hhhcCCcEEEEcCCCCchhhHhH
Q 015595 66 PIIKGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 66 ~~~~~~~~iv~a~tGsGKT~~~~ 88 (404)
.+.+|.-+.+.||+|+|||+..-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 45678888999999999996544
No 320
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=78.85 E-value=1.1 Score=35.90 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 015595 71 RDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~ 89 (404)
.-+++.|++|||||+++-.
T Consensus 19 ~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SCEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999977554
No 321
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=78.67 E-value=1.3 Score=35.97 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=15.4
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
.+++.|++|||||+++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999776553
No 322
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=78.46 E-value=2.4 Score=36.59 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
+.-+.+.||+|+|||+.....+
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4457789999999997655433
No 323
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=78.36 E-value=1.3 Score=36.22 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=17.1
Q ss_pred hhcCCcEEEEcCCCCchhhHhHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+-.|.-+++.||.|+|||+..-.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 34577789999999999966443
No 324
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=78.34 E-value=0.87 Score=37.52 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=13.7
Q ss_pred hhcCCcEEEEcCCCCchhhHhHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..|.-+.+.||+|+|||++.-.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANK 46 (231)
T ss_dssp EECCCEEEEECSCC----CHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 34566788999999999976544
No 325
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=78.31 E-value=1.3 Score=34.52 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=15.6
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
.+++.+++|||||+++-..
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5889999999999775543
No 326
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=78.28 E-value=1.5 Score=37.90 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 015595 71 RDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~ 89 (404)
..+++.||+|+|||.++-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 3689999999999976554
No 327
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=78.26 E-value=1.5 Score=36.70 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCCchhhHhHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~ 90 (404)
.+..+++.|++|+|||++.-..
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4889999999999999775543
No 328
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=78.16 E-value=1.2 Score=35.59 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCchhhHhHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~ 90 (404)
.+..+++.|+.|||||+++-..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 3566899999999999776543
No 329
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=78.05 E-value=1.3 Score=36.18 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.+-+++.||+||||++.+-..+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4457889999999997765533
No 330
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=78.03 E-value=1.3 Score=35.20 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCchhhHhHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~ 90 (404)
.+..+++.|++|||||+++-..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4556899999999999776543
No 331
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=77.98 E-value=1.2 Score=40.05 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=15.5
Q ss_pred cEEEEcCCCCchhhHhHHHH
Q 015595 72 DVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~ 91 (404)
-++|.||||+|||..+...+
T Consensus 4 ~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHH
Confidence 36789999999997765443
No 332
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=77.97 E-value=1.1 Score=35.37 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
+.-+++.|++|||||+.+-..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 345789999999999776543
No 333
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=77.96 E-value=1.2 Score=38.28 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
.-++++||+|||||+.+-..
T Consensus 34 ~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35789999999999765543
No 334
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=77.94 E-value=1.4 Score=35.59 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchhhHhHHHH
Q 015595 72 DVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~ 91 (404)
.+++.||+||||++.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36889999999997766543
No 335
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=77.80 E-value=1.2 Score=35.69 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCchhhHhHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~ 90 (404)
.+.-+.+.|++|||||+++-..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4566789999999999775543
No 336
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=77.79 E-value=1.5 Score=34.52 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
..+++.|++|||||.++-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 35889999999999776543
No 337
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=77.77 E-value=1.2 Score=36.49 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
...+++.|++|||||+.+-..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 356899999999999775543
No 338
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=77.67 E-value=2.3 Score=36.73 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
+.-+.+.||+|+|||+..-..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 3446799999999997655433
No 339
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=77.63 E-value=9.4 Score=31.91 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=50.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VWA--RGLDVQ 337 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-----~~~--~Gid~p 337 (404)
.+.++||.+++++-+..+++.++.. +..+..+.|+.+.......+ ..+ .+|+|+|+ .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3567999999999999988888763 56778888887765543332 233 78999993 121 246777
Q ss_pred CCCEEEE
Q 015595 338 QVSLVIN 344 (404)
Q Consensus 338 ~~~~vi~ 344 (404)
.++.+|+
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8887764
No 340
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=77.48 E-value=1.3 Score=35.98 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=15.4
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
.+++.|++|||||+++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999776543
No 341
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=77.42 E-value=11 Score=34.45 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=51.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC-CC---eEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-ccc-----cCCCCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY-NF---TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWA-----RGLDVQQ 338 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-~~~-----~Gid~p~ 338 (404)
.+.++||.|++..-+...++.+.+. +. .+..++|+....++..... ..+|+|+|. .+. ..+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5679999999999999888888775 54 8899999988776554432 357999993 222 1356667
Q ss_pred CCEEEE
Q 015595 339 VSLVIN 344 (404)
Q Consensus 339 ~~~vi~ 344 (404)
++.||+
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 777664
No 342
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=77.27 E-value=1.6 Score=35.51 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
+..+++.|++|||||+.+-..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 346889999999999776543
No 343
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=77.22 E-value=0.77 Score=38.78 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
.+.+++.||+|+|||..+-..
T Consensus 44 ~~~vll~G~~GtGKT~la~~l 64 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAV 64 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHH
Confidence 456899999999999765543
No 344
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=77.04 E-value=1.4 Score=34.75 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.3
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
.+++.|++|||||+.+-..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L 21 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKV 21 (194)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999776543
No 345
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=76.82 E-value=1.4 Score=34.93 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 015595 71 RDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~ 89 (404)
..+++.|++|||||+.+-.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578999999999977654
No 346
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=76.79 E-value=1.4 Score=34.83 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=15.0
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
-+++.||+|+|||+.+-..
T Consensus 4 ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4678999999999765543
No 347
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=76.75 E-value=16 Score=25.27 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=55.0
Q ss_pred cCchhHHHHHHhhhhcCCCCeEEEEec--chhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 015595 252 EREEWKFDTLCDLYDTLTITQAVIFCN--TKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVL 324 (404)
Q Consensus 252 ~~~~~~~~~l~~~l~~~~~~k~lIf~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 324 (404)
.+.......+.++++..+.-.+++.+. ..++.....+..+..|..+......-+...|.+..+.|++...++-
T Consensus 59 edkedfrenireiwerypqldvvvivttddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdvr 133 (162)
T 2l82_A 59 EDKEDFRENIREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVR 133 (162)
T ss_dssp CSHHHHHHHHHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEEE
T ss_pred ccHHHHHHHHHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCceee
Confidence 444556778888999887766555544 4566677777778889999988888888899999999987665543
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=76.67 E-value=1.5 Score=34.88 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCchhhHhHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~ 90 (404)
.+.-+++.|++|||||+++-..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3456889999999999775543
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=76.49 E-value=1.6 Score=33.83 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=15.5
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
.+++.|++|||||.++-..
T Consensus 4 ~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CEEEESCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5789999999999775543
No 350
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=76.06 E-value=5.1 Score=34.48 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=48.7
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH----hcCCCeEEeChHHHHHHHHcc-CCCccc
Q 015595 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRK-TLRTRA 175 (404)
Q Consensus 101 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~-~~~~~~ 175 (404)
+.++||.|+++.-++...+.+... ++.+..++|+.....+...+ ....+|+|+| +.+... .++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~Gidi~~v~ 98 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAARGLDIPQVD 98 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTCSTTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhcCcccccee
Confidence 346999999999888877777553 57888899987765443322 2458899999 334443 566777
Q ss_pred ceEE
Q 015595 176 IKLL 179 (404)
Q Consensus 176 ~vIi 179 (404)
+||.
T Consensus 99 ~VI~ 102 (300)
T 3i32_A 99 LVVH 102 (300)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7763
No 351
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=76.02 E-value=2.4 Score=37.88 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=19.6
Q ss_pred hhhcCCcEEEEcCCCCchhhHhHH
Q 015595 66 PIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 66 ~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.+-+|+.+.+.+|+|+|||.....
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHH
Confidence 345688999999999999977654
No 352
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=75.93 E-value=1.8 Score=35.31 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
..+++.|++|||||+.+-..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999776543
No 353
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=75.90 E-value=1.4 Score=35.51 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 015595 69 KGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~ 88 (404)
.+.-+.|.||+|||||+.+-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34557899999999996644
No 354
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.89 E-value=2.3 Score=46.44 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=30.6
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (404)
.++.+++.+|+|+|||..+...+.+....+ .+++|+.....
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G---~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEEcccc
Confidence 367899999999999988877766655443 34888876543
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=75.81 E-value=1.4 Score=34.75 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.4
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
.+++.|++|||||+++-..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999775543
No 356
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=75.76 E-value=1.8 Score=35.63 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
...+++.|++|||||+.+-...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999997766543
No 357
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=75.73 E-value=1.4 Score=34.36 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVC 92 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~ 92 (404)
.|+.+++.++.|+|||..++.++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 366789999999999977665553
No 358
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=75.69 E-value=3.4 Score=32.06 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
-+.+.++.|||||......
T Consensus 6 ~i~i~G~sGsGKTTl~~~L 24 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKW 24 (169)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999765543
No 359
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=75.49 E-value=2.6 Score=29.81 Aligned_cols=37 Identities=8% Similarity=0.224 Sum_probs=32.5
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMP 305 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 305 (404)
+..++++||.+-..+...+..|+..|+++..+.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4568999999999999999999999999999999853
No 360
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=75.45 E-value=1.8 Score=35.97 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
...+++.|++|||||+++-...
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999997765543
No 361
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=75.44 E-value=1.7 Score=34.97 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
+.-+++.|++|||||+.+-...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4567899999999997766543
No 362
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=75.18 E-value=12 Score=33.29 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=49.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHhh----CCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-c----c-cCCCCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W----A-RGLDVQQ 338 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~----~-~Gid~p~ 338 (404)
.+.++||.++++..+.++++.+.. .+..+..++|+.+.......+. ..+|+|+|.- + . ..+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999999888887765 3678889999987765544433 4679999932 1 1 2355566
Q ss_pred CCEEEE
Q 015595 339 VSLVIN 344 (404)
Q Consensus 339 ~~~vi~ 344 (404)
++.||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 776664
No 363
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=75.17 E-value=2.9 Score=29.00 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=31.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDM 304 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 304 (404)
+..++++||.+-..+...+..|+..|+++..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 456899999999999999999999999888888874
No 364
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=75.13 E-value=1.7 Score=37.51 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=18.1
Q ss_pred hhcCCcEEEEcCCCCchhhHhHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+-.|+.+.|.||+|+|||+..-+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~l 145 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNS 145 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHH
Confidence 33577889999999999966554
No 365
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=75.02 E-value=1.7 Score=34.13 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhhHhH
Q 015595 72 DVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~ 88 (404)
.+.+.||+|+|||+..-
T Consensus 2 ~i~l~G~nGsGKTTLl~ 18 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVK 18 (178)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999996643
No 366
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=75.00 E-value=1.3 Score=36.26 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=18.5
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHH
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
..|.-+.+.+|+|+|||+.....+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345668899999999997765544
No 367
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=74.95 E-value=1.6 Score=34.84 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
..+++.|++|||||+++-..
T Consensus 21 ~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35789999999999775543
No 368
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=74.94 E-value=1.7 Score=38.20 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 015595 71 RDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~ 89 (404)
..+++.||+|+|||..+-.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5689999999999966544
No 369
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=74.59 E-value=1.7 Score=34.96 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCCchhhHhHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.+.-+++.|+.|||||+++-...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 35668999999999998766543
No 370
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=74.51 E-value=2.3 Score=38.83 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=23.4
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
.+++.+++|+|||+.+...+......+ .+++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G---~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRG---LKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHH---CCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEe
Confidence 578999999999987766555444333 3466665
No 371
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=74.50 E-value=2 Score=37.94 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=23.3
Q ss_pred cEEEEcCCCCchhhHhHHHHHhhhhc---CCCceeEEEEcc
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQTVDT---SSREVQALILSP 109 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~~~~---~~~~~~~lil~p 109 (404)
-+.+.||+|+|||......+...... +..+.+++++.-
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 46899999999997766554433211 111235677754
No 372
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=74.43 E-value=1.7 Score=34.66 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
.+++.|++|||||+.+-..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 3689999999999775543
No 373
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=74.33 E-value=1.7 Score=35.47 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
..+.+.|++|||||+++-..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35789999999999775543
No 374
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=74.24 E-value=3.4 Score=35.53 Aligned_cols=69 Identities=7% Similarity=0.031 Sum_probs=47.0
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC-----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc------c-cCCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVW------A-RGLDV 336 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~------~-~Gid~ 336 (404)
...++||.+++++-+..+++.++.. +..+....|+.+...+ .....+|+|+|+-- . ..+++
T Consensus 161 ~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l 233 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDP 233 (300)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCG
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCCh
Confidence 3447999999999999988877653 4566677766542211 13456899999532 1 35677
Q ss_pred CCCCEEEE
Q 015595 337 QQVSLVIN 344 (404)
Q Consensus 337 p~~~~vi~ 344 (404)
..++++|+
T Consensus 234 ~~l~~lVl 241 (300)
T 3fmo_B 234 KKIKVFVL 241 (300)
T ss_dssp GGCSEEEE
T ss_pred hhceEEEE
Confidence 78888875
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=74.22 E-value=1.7 Score=33.95 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
|..+++.|+.|||||+++-..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 456789999999999765543
No 376
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=74.12 E-value=1.8 Score=33.26 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
.+++.|++|||||+++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4789999999999775543
No 377
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=74.11 E-value=2.2 Score=34.39 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=17.8
Q ss_pred hhcCCcEEEEcCCCCchhhHhHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
+..+.-+++.|++|+|||+.+-.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH
Confidence 34566788999999999976554
No 378
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=73.99 E-value=1.8 Score=34.62 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchhhHhHH
Q 015595 72 DVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~ 89 (404)
.+++.|++|||||+++-.
T Consensus 17 ~I~l~G~~GsGKsT~~~~ 34 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999976543
No 379
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=73.90 E-value=2.9 Score=29.35 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=31.3
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDM 304 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 304 (404)
+.++++++|.+-..+...+..|++.|+.+..+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 456899999999999999999999999888888874
No 380
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=73.87 E-value=1.8 Score=34.70 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=14.5
Q ss_pred EEEEcCCCCchhhHhHHH
Q 015595 73 VIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~ 90 (404)
+.+.|+.|||||+++-..
T Consensus 5 i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEECSTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999765543
No 381
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=73.69 E-value=3.2 Score=36.75 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCchhhHhHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.-+.+.||+|+|||+..-..+
T Consensus 158 ~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 346789999999997655433
No 382
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=73.67 E-value=2.1 Score=34.75 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
+..+++.|++|||||+.+-..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 346889999999999776543
No 383
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=73.66 E-value=1.9 Score=34.10 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=14.8
Q ss_pred EEEEcCCCCchhhHhHHH
Q 015595 73 VIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~ 90 (404)
+++.|+.|||||+++-..
T Consensus 3 I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEECSTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999776543
No 384
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=73.60 E-value=1.6 Score=34.13 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=12.6
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~ 90 (404)
+.-+++.|++|||||+++-..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp CCEEEEECCC----CHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 345889999999999776543
No 385
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=73.55 E-value=2.9 Score=29.16 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=31.7
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDM 304 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 304 (404)
+..++++||.+-..+...+..|+..|+++..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 456899999999899999999999999888888874
No 386
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=73.44 E-value=5.7 Score=40.91 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=55.5
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC----CC----eEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-ccccCCC-CCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY----NF----TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWARGLD-VQQ 338 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-~~~~Gid-~p~ 338 (404)
.+.++||.+++++-+.++++.++.. ++ .+..++|+.+...+.+..+.+.+ .+|+|+|+ .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3568999999999999888888653 55 78999999998887777777766 89999994 2222222 556
Q ss_pred CCEEEE
Q 015595 339 VSLVIN 344 (404)
Q Consensus 339 ~~~vi~ 344 (404)
++++|+
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777764
No 387
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=73.36 E-value=2 Score=34.69 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCCchhhHhHHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.+.-+++.|+.|||||+++-...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35568999999999997766543
No 388
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=73.30 E-value=2.2 Score=32.38 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchhhHhH
Q 015595 72 DVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~ 88 (404)
-.++.||+|+|||.+.-
T Consensus 25 ~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLD 41 (149)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46899999999997643
No 389
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=73.25 E-value=1.8 Score=35.07 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=15.4
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
.+++.|++|||||+.+-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999776543
No 390
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=73.15 E-value=1.7 Score=37.81 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHHh
Q 015595 69 KGRDVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
.+..+++.||+|+|||..+...+..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3455799999999999776665443
No 391
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=72.75 E-value=2 Score=34.02 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=14.9
Q ss_pred EEEEcCCCCchhhHhHHH
Q 015595 73 VIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~ 90 (404)
+++.|+.|||||+++-..
T Consensus 3 I~l~G~~GsGKsT~~~~L 20 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999776653
No 392
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=72.73 E-value=1.8 Score=34.87 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
+.-+.+.||+|||||+.+-.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~ 25 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQA 25 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHH
Confidence 44577999999999976543
No 393
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=72.64 E-value=2.7 Score=37.91 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=19.3
Q ss_pred ccccccccCCCCHHHHHHHHHCCCC
Q 015595 30 EAITSFDAMGIKDDLLRGIYQYGFE 54 (404)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~~~~ 54 (404)
.++......++++...+.|.+.||.
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~ 105 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLH 105 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCC
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCC
Confidence 4455666678999999999988874
No 394
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=72.59 E-value=1.6 Score=36.06 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCchhhH
Q 015595 69 KGRDVIAQAQSGTGKTSM 86 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~ 86 (404)
.|.-+.+.||.|||||+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 466788999999999954
No 395
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=72.57 E-value=2 Score=36.16 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
.-+++.|++|||||+.+-..
T Consensus 5 ~lIvl~G~pGSGKSTla~~L 24 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNL 24 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999776553
No 396
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=72.20 E-value=2.4 Score=34.67 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=15.3
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
.+++.|++|||||+.+-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999776554
No 397
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=72.10 E-value=2.5 Score=33.54 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=24.5
Q ss_pred CCcccceEEeccccc--cccCcHHHHHHHHhhCCCCceEEEEeeec
Q 015595 171 LRTRAIKLLDESDEM--LSRGFKDQIYDVYRYLPPDLQVVLISATL 214 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~--~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 214 (404)
....+++|+||+..+ .+..+...+..++.. ...+|+-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 456789999997555 333455666666553 22345445664
No 398
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=71.77 E-value=1.6 Score=38.48 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
..++++.||+|+|||..+-.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 34699999999999976543
No 399
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=71.66 E-value=2 Score=34.32 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchhhHhHH
Q 015595 72 DVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~ 89 (404)
.+.+.|++|||||+.+-.
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 478999999999976544
No 400
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=71.57 E-value=6.2 Score=34.29 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=13.8
Q ss_pred EEEEcCCCCchhhHhHH
Q 015595 73 VIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~ 89 (404)
+.+.||+|||||+.+-.
T Consensus 95 igI~GpsGSGKSTl~~~ 111 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRV 111 (321)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999976543
No 401
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=71.52 E-value=2.5 Score=37.44 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=18.6
Q ss_pred hhhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 63 ~~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
+++.+++|.+ ++.-|.||||||....
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 3445566755 5679999999997643
No 402
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=71.17 E-value=3.1 Score=38.49 Aligned_cols=20 Identities=20% Similarity=0.327 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
..++++.||+|+|||.++-.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 45789999999999976554
No 403
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=71.13 E-value=4.2 Score=34.13 Aligned_cols=52 Identities=6% Similarity=0.109 Sum_probs=32.5
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHHHHHHHHc
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 125 (404)
|..+++.+++|+|||..++..+.+.+..+. +++|++-. +-..+..+.++.++
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge---~~~~~~~~-e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDN---LVGMFSIS-YPLQLIIRILSRFG 72 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTC---EEEEEECS-SCHHHHHHHHHHTT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCC---cEEEEEEe-CCHHHHHHHHHHcC
Confidence 456788888888888666666666665543 37776643 33445555565554
No 404
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=71.05 E-value=4 Score=41.61 Aligned_cols=62 Identities=13% Similarity=0.270 Sum_probs=37.4
Q ss_pred ccccccCC--CCHHHHHHHHHCCCCC--CcHHH--HHhhhhhhc---CCcEEEEcCCCCchhhHhHHHHHh
Q 015595 32 ITSFDAMG--IKDDLLRGIYQYGFEK--PSAIQ--QRAVMPIIK---GRDVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 32 ~~~~~~~~--l~~~~~~~l~~~~~~~--~~~~Q--~~~~~~~~~---~~~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
.++|..+| +++...+......... |..+. ..|+..++. .+.+++.|..|+|||...=..+-.
T Consensus 97 VNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~y 167 (1052)
T 4anj_A 97 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRY 167 (1052)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHH
Confidence 45566665 3666666665543332 33332 344444443 467999999999999776554433
No 405
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=70.92 E-value=4.4 Score=32.32 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 015595 71 RDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~ 89 (404)
.-+.+.|+.|||||+.+-.
T Consensus 23 ~~i~i~G~~GsGKstl~~~ 41 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQ 41 (201)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3478899999999976554
No 406
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=70.83 E-value=2.4 Score=33.73 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=15.1
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
.+.+.|++|||||+++-..
T Consensus 14 iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999776554
No 407
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=70.46 E-value=2.3 Score=33.92 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
.+.|.+++|||||+++-..
T Consensus 10 ~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4688999999999775543
No 408
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=70.35 E-value=2.7 Score=38.37 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
.+++++.||+|+|||..+-.
T Consensus 50 ~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 36799999999999976543
No 409
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=70.13 E-value=2.5 Score=33.06 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchhhHhH
Q 015595 72 DVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~ 88 (404)
-.+|.|++|+|||...-
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 56899999999996644
No 410
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=69.88 E-value=3 Score=36.31 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=18.7
Q ss_pred hhhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 63 ~~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
++..+++|.+ ++.-|.||||||....
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 3445566765 5679999999997744
No 411
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=69.81 E-value=3.8 Score=44.82 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=34.2
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~ 118 (404)
+-.++.+++.+++|+|||..+...+.+.+..+. +++|+.-. ++.++..
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge---~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEECTT-SCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEEcc-ccHHHHH
Confidence 335678999999999999988887777765544 47777653 3334433
No 412
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=69.77 E-value=2.5 Score=35.11 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
...+++.|++|||||+.+-.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999966544
No 413
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=69.67 E-value=2.6 Score=40.30 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchhhH
Q 015595 72 DVIAQAQSGTGKTSM 86 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~ 86 (404)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 799999999999954
No 414
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=69.60 E-value=3.2 Score=36.96 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchhhHhH
Q 015595 72 DVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~ 88 (404)
-.+|.||+|+|||...-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46799999999997654
No 415
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=69.54 E-value=25 Score=30.58 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=49.5
Q ss_pred CCCCeEEEEecchhhHHHHHHHHhhC----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-c----c-cCCCCC
Q 015595 268 LTITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W----A-RGLDVQ 337 (404)
Q Consensus 268 ~~~~k~lIf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~----~-~Gid~p 337 (404)
..+.+++|.++++.-+..+++.++.. +..+..++|+.........+. ..+|+|+|.- + . ..+++.
T Consensus 72 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~ 146 (367)
T 1hv8_A 72 NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLK 146 (367)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTT
T ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCcccc
Confidence 34668999999999998888888763 567888888876654433322 4689999942 1 1 235566
Q ss_pred CCCEEEE
Q 015595 338 QVSLVIN 344 (404)
Q Consensus 338 ~~~~vi~ 344 (404)
.++.+|+
T Consensus 147 ~~~~iIi 153 (367)
T 1hv8_A 147 NVKYFIL 153 (367)
T ss_dssp SCCEEEE
T ss_pred cCCEEEE
Confidence 7776664
No 416
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=69.51 E-value=1.9 Score=36.14 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~ 90 (404)
..+++.|++|||||+.+-..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45789999999999765543
No 417
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=69.38 E-value=3.9 Score=43.97 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=30.8
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccH
Q 015595 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (404)
-.+..+++.+++|+|||..++..+...+..+. +++|+.-..
T Consensus 32 ~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~---~vlYI~te~ 72 (1706)
T 3cmw_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEH 72 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEECTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhCCC---ceEEEEecC
Confidence 34678999999999999887777766665543 488887644
No 418
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=69.31 E-value=3.5 Score=35.82 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=13.8
Q ss_pred EEEEcCCCCchhhHhHH
Q 015595 73 VIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~ 89 (404)
++|.|+.|+|||+..-.
T Consensus 7 ~~i~G~~GaGKTTll~~ 23 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRH 23 (318)
T ss_dssp EEEEESSSSSCHHHHHH
T ss_pred EEEEecCCCCHHHHHHH
Confidence 68899999999966443
No 419
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=69.26 E-value=2.8 Score=35.01 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.+..+.+.||+|||||+++-+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 355688999999999966544
No 420
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=69.14 E-value=4.4 Score=32.76 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=47.1
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC--------CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cccc-CC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY--------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VWAR-GL 334 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-----~~~~-Gi 334 (404)
.+.++||.+++++.+..+++.+++. +..+..++|+.+..... +.+ .+..+|+|+|+ .+.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 3468999999999998888877653 56777888876433211 111 23568999994 2222 35
Q ss_pred CCCCCCEEEE
Q 015595 335 DVQQVSLVIN 344 (404)
Q Consensus 335 d~p~~~~vi~ 344 (404)
++..++.+|.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 6667777664
No 421
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=69.07 E-value=2.6 Score=32.28 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCCchhhHhHH
Q 015595 68 IKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
..|.-+.+.+|.|+|||+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~ 52 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRG 52 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3466678999999999965443
No 422
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=69.05 E-value=8.8 Score=34.32 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=49.3
Q ss_pred eeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHH---H-hcCCCeEEeChHHHHHHHHcc-CCCcccc
Q 015595 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---L-EHGVHVVSGTPGRVCDMIKRK-TLRTRAI 176 (404)
Q Consensus 102 ~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~iiv~T~~~l~~~l~~~-~~~~~~~ 176 (404)
.++||.|+++.-+....+.+.+. +..+..++|+....++... + ....+|+|+|. .+... .++..++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~Gidip~~~~ 337 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARGIDVEQVSV 337 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTSSCCCTTEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccccCCCccCCCE
Confidence 47999999999999888888765 4677888888766554332 2 24578999993 44443 5667777
Q ss_pred eEE
Q 015595 177 KLL 179 (404)
Q Consensus 177 vIi 179 (404)
||.
T Consensus 338 Vi~ 340 (412)
T 3fht_A 338 VIN 340 (412)
T ss_dssp EEE
T ss_pred EEE
Confidence 773
No 423
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=68.66 E-value=2.5 Score=35.00 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCCchhhHh
Q 015595 68 IKGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~ 87 (404)
.+|.-+.+.||.|+|||+..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34667889999999999553
No 424
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=68.30 E-value=3.9 Score=27.86 Aligned_cols=35 Identities=9% Similarity=0.210 Sum_probs=30.7
Q ss_pred CeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCC
Q 015595 271 TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMP 305 (404)
Q Consensus 271 ~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 305 (404)
+++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999998999999999999988778888754
No 425
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=68.21 E-value=3.4 Score=36.49 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=18.1
Q ss_pred hhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 64 ~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
+..+++|.+ ++.-|.||||||....
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCcceEEEECCCCCCcceEee
Confidence 445566765 4679999999997643
No 426
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=67.98 E-value=7 Score=30.43 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 015595 72 DVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~ 90 (404)
-+++.|+.|+|||......
T Consensus 8 ~i~i~G~sGsGKTTl~~~l 26 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKL 26 (174)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 4678999999999665443
No 427
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=67.85 E-value=1.7 Score=33.97 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=15.3
Q ss_pred cEEEEcCCCCchhhHhHHHH
Q 015595 72 DVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~ 91 (404)
-+.+.+++|||||+.....+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36789999999997765533
No 428
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=67.83 E-value=2.2 Score=34.99 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCchhhH
Q 015595 69 KGRDVIAQAQSGTGKTSM 86 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~ 86 (404)
+|.-+.+.||.|+|||+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466678999999999955
No 429
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=67.76 E-value=4.7 Score=38.47 Aligned_cols=41 Identities=12% Similarity=0.230 Sum_probs=27.3
Q ss_pred CCcccceEEeccccccccCcHHHHHHHHhhCCCCceEEEEe
Q 015595 171 LRTRAIKLLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 211 (404)
Q Consensus 171 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 211 (404)
+...+++++||.-.-.+......+...++.+.++.-+|+.|
T Consensus 495 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 535 (587)
T 3qf4_A 495 VKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT 535 (587)
T ss_dssp HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 45567889999998887776777766666554444444433
No 430
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=67.75 E-value=4.8 Score=37.82 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=27.3
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (404)
+..|.-+++.+++|+|||......+...... +.+++++++..
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~~vi~~~~ee 319 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACAN---KERAILFAYEE 319 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TCCEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CCCEEEEEEeC
Confidence 3456678899999999997665544333222 33477777643
No 431
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=67.61 E-value=3.3 Score=36.38 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=17.2
Q ss_pred hhhhhcCCc--EEEEcCCCCchhhHh
Q 015595 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (404)
Q Consensus 64 ~~~~~~~~~--~iv~a~tGsGKT~~~ 87 (404)
+..+++|.+ ++.-|.||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344456655 467899999999774
No 432
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=67.57 E-value=4.6 Score=36.06 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=21.3
Q ss_pred hhhcCCcEEEEcCCCCchhhHhHHHHHhhh
Q 015595 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (404)
Q Consensus 66 ~~~~~~~~iv~a~tGsGKT~~~~~~~~~~~ 95 (404)
.+-+|+...|.++.|+|||..+.. +...+
T Consensus 171 PigrGQR~lIfg~~g~GKT~Ll~~-Ia~~i 199 (427)
T 3l0o_A 171 PIGKGQRGMIVAPPKAGKTTILKE-IANGI 199 (427)
T ss_dssp CCBTTCEEEEEECTTCCHHHHHHH-HHHHH
T ss_pred cccCCceEEEecCCCCChhHHHHH-HHHHH
Confidence 345688999999999999977633 44433
No 433
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=67.52 E-value=2.8 Score=34.00 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCCchhhHh
Q 015595 68 IKGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~ 87 (404)
.+|.-+.+.||.|+|||+..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999653
No 434
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=67.48 E-value=4 Score=35.91 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=19.9
Q ss_pred hhhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 63 ~~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
.+..+++|.+ ++.-|.||||||....
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 5667777766 4669999999997753
No 435
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=67.41 E-value=3.6 Score=36.21 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=17.3
Q ss_pred hhhhhcCCc--EEEEcCCCCchhhHh
Q 015595 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (404)
Q Consensus 64 ~~~~~~~~~--~iv~a~tGsGKT~~~ 87 (404)
+..+++|.+ ++.-|.||||||...
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 334556655 467999999999764
No 436
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=67.36 E-value=3.6 Score=36.35 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=17.6
Q ss_pred hhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 64 ~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
+..+++|.+ ++.-|.||||||....
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred HHHHhCCCceEEEEeCCCCCCceeeec
Confidence 334556655 4678999999997643
No 437
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=67.30 E-value=3.7 Score=35.86 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=19.5
Q ss_pred hhhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 63 ~~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
.+..+++|.+ ++.-|.||||||....
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 5566677765 4679999999997643
No 438
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=67.18 E-value=3.4 Score=36.67 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=18.4
Q ss_pred hhhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 63 ~~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
++..+++|.+ ++.-|.||||||....
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 3445566765 4678999999997643
No 439
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=67.10 E-value=3.5 Score=36.33 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=17.9
Q ss_pred hhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 64 ~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
+..+++|.+ ++.-|.||||||....
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHcCCccceeeecCCCCCCCeEEe
Confidence 444566755 4679999999997643
No 440
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=67.03 E-value=3.7 Score=36.39 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=18.1
Q ss_pred hhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 64 ~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
+..+++|.+ ++.-|.||||||....
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCceEEEeecCCCCCCceEEe
Confidence 444566765 4679999999997643
No 441
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=66.84 E-value=3.7 Score=36.41 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=18.5
Q ss_pred hhhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 63 ~~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
++..+++|.+ ++..|.||||||....
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 3445567765 4669999999996643
No 442
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=66.83 E-value=66 Score=28.15 Aligned_cols=75 Identities=13% Similarity=0.068 Sum_probs=51.8
Q ss_pred CceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHH---Hh-cCCCeEEeChHHHHHHHHcc-CCCcc
Q 015595 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---LE-HGVHVVSGTPGRVCDMIKRK-TLRTR 174 (404)
Q Consensus 100 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~T~~~l~~~l~~~-~~~~~ 174 (404)
.+.++|+.|+++.-+....+.+++. +..+..++++....++... +. ...+|+|+|. .+... +++..
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~Gidip~~ 312 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLARGIDIPTV 312 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSSSCCCTTE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhcCCCcccC
Confidence 3457999999999998888888764 4677888888765544332 22 4578999994 33433 56677
Q ss_pred cceEEeccc
Q 015595 175 AIKLLDESD 183 (404)
Q Consensus 175 ~~vIiDE~h 183 (404)
++||.-+.-
T Consensus 313 ~~Vi~~~~p 321 (395)
T 3pey_A 313 SMVVNYDLP 321 (395)
T ss_dssp EEEEESSCC
T ss_pred CEEEEcCCC
Confidence 887754443
No 443
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=66.67 E-value=20 Score=32.56 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=48.1
Q ss_pred EEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH----hcCCCeEEeChHHHHHHHHcc-CCCcccceE
Q 015595 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRK-TLRTRAIKL 178 (404)
Q Consensus 104 ~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~-~~~~~~~vI 178 (404)
+||.|+++.-++...+.+.+. +..+..++|+....++...+ .....|+|+|. .+.+. .++.+++||
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~rGlDi~~v~~VI 373 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASRGLDIKNIKHVI 373 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTSSCCCTTCCEEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhCCCCcccCCEEE
Confidence 999999999998888888764 47788889887765544332 24578999994 34433 566677776
Q ss_pred E
Q 015595 179 L 179 (404)
Q Consensus 179 i 179 (404)
.
T Consensus 374 ~ 374 (434)
T 2db3_A 374 N 374 (434)
T ss_dssp E
T ss_pred E
Confidence 4
No 444
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=66.66 E-value=32 Score=26.53 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=50.6
Q ss_pred CCeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCCCCCCEEEEccCC
Q 015595 270 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLP 348 (404)
Q Consensus 270 ~~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~Gid~p~~~~vi~~~~p 348 (404)
.+.+.|.|++..++..+.+.|...++.+..+.++.. .....|.|.|--...|+.+ +.|+.++..
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETCB
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecCC
Confidence 567899999999999999999999888877765431 1234689999888999998 778777654
No 445
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=66.65 E-value=4.3 Score=38.94 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.3
Q ss_pred hhhcCCcEEEEcCCCCchhhHhHH
Q 015595 66 PIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 66 ~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.+..+..+++.||+|+|||..+-.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHHH
Confidence 345678999999999999976544
No 446
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=66.61 E-value=4.2 Score=35.81 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=20.1
Q ss_pred hhhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 63 ~~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
.+..+++|.+ ++.-|.||||||....
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 5677778866 4668999999997753
No 447
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=66.56 E-value=2.5 Score=35.44 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchhhHh
Q 015595 69 KGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~ 87 (404)
+|.-+.+.||.|+|||+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999553
No 448
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=66.49 E-value=3.6 Score=36.33 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=18.7
Q ss_pred hhhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 63 ~~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
++..+++|.+ ++.-|.||||||....
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 3455667765 4678999999997643
No 449
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=66.44 E-value=3.6 Score=36.33 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=18.4
Q ss_pred hhhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 63 ~~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
++..+++|.+ ++.-|.||||||.+..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEec
Confidence 3445566765 4668999999997643
No 450
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=66.38 E-value=3.3 Score=33.54 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchhhHhHH
Q 015595 72 DVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~ 89 (404)
-+.+.|+.|||||+++-.
T Consensus 6 ~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANA 23 (218)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976554
No 451
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=66.37 E-value=4 Score=35.88 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=17.6
Q ss_pred hhhhhcCCc--EEEEcCCCCchhhHh
Q 015595 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (404)
Q Consensus 64 ~~~~~~~~~--~iv~a~tGsGKT~~~ 87 (404)
+..+++|.+ ++.-|.||||||...
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 444566765 467899999999764
No 452
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=66.35 E-value=18 Score=37.89 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchhhHhHHHH
Q 015595 72 DVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~ 91 (404)
-+.|.|+.|.|||..+...+
T Consensus 149 ~v~i~G~gG~GKTtLa~~~~ 168 (1249)
T 3sfz_A 149 WVTIYGMAGCGKSVLAAEAV 168 (1249)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHh
Confidence 36789999999997765544
No 453
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=66.26 E-value=5.7 Score=34.56 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=24.1
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcc
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (404)
+++.+..|.|||+++...+......+ .+++++-.
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~G---~rVLlvD~ 50 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARSG---KKTLVIST 50 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCC---CcEEEEeC
Confidence 46788999999988877666655443 34776654
No 454
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=66.21 E-value=5.3 Score=27.99 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=31.1
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhCCC-eEEEecCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGYNF-TVSSMHGDM 304 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 304 (404)
+..++++||.+-..+...+..|+..|+ .+..+.|++
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 356799999999999999999999998 488888884
No 455
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=66.19 E-value=2.9 Score=34.37 Aligned_cols=19 Identities=32% Similarity=0.653 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCchhhHh
Q 015595 69 KGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~ 87 (404)
+|.-+.+.||.|+|||+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999553
No 456
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=66.17 E-value=2.9 Score=35.11 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCCchhhHhH
Q 015595 68 IKGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 68 ~~~~~~iv~a~tGsGKT~~~~ 88 (404)
..|.-+.+.||.|+|||+..-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~ 64 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAK 64 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 346778899999999996543
No 457
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=66.14 E-value=3.7 Score=36.93 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=18.4
Q ss_pred hhhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 63 ~~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
++..+++|.+ ++.-|.||||||.+..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 3445566755 4668999999997744
No 458
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=66.13 E-value=2.9 Score=35.51 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCchhhHh
Q 015595 69 KGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~ 87 (404)
+|.-+.+.||.|+|||+..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999653
No 459
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=66.13 E-value=9.6 Score=32.91 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 015595 70 GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
|+.+++.|+.|+|||..++.++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~ 165 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELI 165 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHH
Confidence 6678999999999997766554
No 460
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=65.97 E-value=6.2 Score=34.45 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=23.6
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
+++.+..|.|||+++...+......+ .+++++-
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~G---~rVllvD 54 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKVR---SSVLLIS 54 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTSS---SCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC---CeEEEEE
Confidence 56788999999988877666555443 3577764
No 461
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=65.94 E-value=2.7 Score=34.88 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchhhHh
Q 015595 69 KGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~ 87 (404)
+|.-+.+.||.|+|||+..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666789999999999653
No 462
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=65.94 E-value=2.2 Score=36.82 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 015595 69 KGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~ 88 (404)
.|.-+.+.||+|+|||+..-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHH
Confidence 46778899999999996543
No 463
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=65.93 E-value=2.7 Score=35.41 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCchhhHh
Q 015595 69 KGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~ 87 (404)
.|.-+.+.||.|+|||+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666789999999999653
No 464
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=65.81 E-value=3 Score=34.77 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 015595 69 KGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~ 88 (404)
.|.-+.+.||.|+|||+..-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678899999999996533
No 465
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=65.76 E-value=3.5 Score=36.45 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=18.8
Q ss_pred hhhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 63 ~~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
++..+++|.+ ++.-|.||||||....
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 4455667765 4679999999997644
No 466
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=65.60 E-value=11 Score=37.14 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHh
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
.+.+++.|..|+|||...=..+-.
T Consensus 156 nQsIiisGESGAGKTe~tK~i~~y 179 (795)
T 1w7j_A 156 NQSIIVSGESGAGKTVSAKYAMRY 179 (795)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCcchHHHHHHHH
Confidence 457899999999999775554433
No 467
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=65.58 E-value=3.4 Score=34.42 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.9
Q ss_pred cEEEEcCCCCchhhHhHH
Q 015595 72 DVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~ 89 (404)
-+.|.|++|||||+++-.
T Consensus 24 iI~I~G~~GSGKST~a~~ 41 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAK 41 (252)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999977654
No 468
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=65.51 E-value=11 Score=34.33 Aligned_cols=54 Identities=6% Similarity=-0.118 Sum_probs=39.1
Q ss_pred eeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHHhcCCCeEEeCh
Q 015595 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTP 159 (404)
Q Consensus 102 ~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~ 159 (404)
.++||+||++.-++...+.+++. +..+..++|+..............+|+|+|.
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 46999999999999888888775 5778888877433222222335689999993
No 469
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=65.30 E-value=12 Score=38.45 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCCchhhHhHHHHHh
Q 015595 70 GRDVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
.+.++|.|..|+|||...=..+-+
T Consensus 156 ~QsIiisGESGAGKTe~~K~i~~y 179 (1080)
T 2dfs_A 156 NQSIIVSGESGAGKTVSAKYAMRY 179 (1080)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCCCccchHHHHHHH
Confidence 457899999999999775554433
No 470
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=65.26 E-value=3.2 Score=34.40 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 015595 70 GRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 70 ~~~~iv~a~tGsGKT~~~~~ 89 (404)
+.-+.+.||.|||||+.+-.
T Consensus 25 g~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 44567899999999977554
No 471
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.10 E-value=4.2 Score=36.61 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=19.8
Q ss_pred hhhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 63 ~~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
.+..+++|.+ ++.-|.||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 5666778866 4668999999997753
No 472
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=65.09 E-value=3.5 Score=35.31 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchhhHhHH
Q 015595 72 DVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~ 89 (404)
-+.|.|++|||||+.+-.
T Consensus 33 ii~I~G~sGsGKSTla~~ 50 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQ 50 (290)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 357899999999976543
No 473
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=65.02 E-value=3.8 Score=36.46 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=17.7
Q ss_pred hhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 64 ~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
+..+++|.+ ++.-|.||||||....
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCceEEEEeecCCCCCcceecc
Confidence 334556655 4679999999997643
No 474
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=65.00 E-value=3.4 Score=35.41 Aligned_cols=18 Identities=17% Similarity=0.280 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchhhHhHH
Q 015595 72 DVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~ 89 (404)
-+++.|++|||||+.+-.
T Consensus 4 ~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999976554
No 475
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=64.93 E-value=2.9 Score=35.23 Aligned_cols=19 Identities=32% Similarity=0.664 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCchhhHh
Q 015595 69 KGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~ 87 (404)
+|.-+.+.||.|+|||+..
T Consensus 49 ~Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEcCCCCcHHHHH
Confidence 4666789999999999653
No 476
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=64.90 E-value=3.1 Score=35.09 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchhhHh
Q 015595 69 KGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~ 87 (404)
+|.-+.+.||.|+|||+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp TTCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4667789999999999653
No 477
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=64.83 E-value=3.8 Score=36.60 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~ 89 (404)
.++.+++.||+|+|||+.+-.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~ 188 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAA 188 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456789999999999966544
No 478
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=64.77 E-value=2.9 Score=35.26 Aligned_cols=19 Identities=21% Similarity=0.679 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchhhHh
Q 015595 69 KGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~ 87 (404)
.|.-+.+.||.|+|||+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4667789999999999653
No 479
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=64.54 E-value=3.8 Score=36.51 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchhhHhH
Q 015595 71 RDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~ 88 (404)
.-.++.|+||+|||.+.-
T Consensus 26 gl~vi~G~NGaGKT~ile 43 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFE 43 (371)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 346899999999997644
No 480
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=64.46 E-value=8.2 Score=34.06 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=17.4
Q ss_pred cEEEEcCCCCchhhHhHHHHHhh
Q 015595 72 DVIAQAQSGTGKTSMIALTVCQT 94 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~~~~~~~ 94 (404)
.+.+.|++|+|||..+...+...
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999997766544443
No 481
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=64.38 E-value=5.8 Score=39.03 Aligned_cols=60 Identities=12% Similarity=0.253 Sum_probs=33.6
Q ss_pred ccccccCCC-CHHHHHHHHHCCCC--CCcHHH--HHhhhhhhc---CCcEEEEcCCCCchhhHhHHHH
Q 015595 32 ITSFDAMGI-KDDLLRGIYQYGFE--KPSAIQ--QRAVMPIIK---GRDVIAQAQSGTGKTSMIALTV 91 (404)
Q Consensus 32 ~~~~~~~~l-~~~~~~~l~~~~~~--~~~~~Q--~~~~~~~~~---~~~~iv~a~tGsGKT~~~~~~~ 91 (404)
.++|..+|+ ++...+........ .|..+. ..++..++. .+.+++.|..|+|||...=..+
T Consensus 125 vNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im 192 (783)
T 4db1_A 125 VNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVI 192 (783)
T ss_dssp ECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHH
Confidence 345555553 45555555433222 232222 344444443 4578999999999997755544
No 482
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=64.37 E-value=29 Score=30.93 Aligned_cols=73 Identities=11% Similarity=0.213 Sum_probs=50.2
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhC----CCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cccc-CCCCCC
Q 015595 269 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VWAR-GLDVQQ 338 (404)
Q Consensus 269 ~~~k~lIf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-----~~~~-Gid~p~ 338 (404)
.+.+++|.++++..+..+++.++.. +..+....|+.+.... .+.+..+..+|+|+|. .+.. .+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 5568999999999999888888664 5667777777654433 3445557789999993 2222 345666
Q ss_pred CCEEEE
Q 015595 339 VSLVIN 344 (404)
Q Consensus 339 ~~~vi~ 344 (404)
++.||+
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 676654
No 483
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=64.36 E-value=2.9 Score=34.72 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 015595 69 KGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~ 88 (404)
.|.-+.+.||.|+|||+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~ 46 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFS 46 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46668899999999996533
No 484
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=64.30 E-value=3.7 Score=34.63 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 015595 69 KGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~ 88 (404)
+|.-+.+.||.|+|||+..-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk 64 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSA 64 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46677899999999996543
No 485
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=64.19 E-value=6.9 Score=34.49 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=23.5
Q ss_pred EEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEc
Q 015595 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (404)
+++.+..|.|||+++...+......+ .+++++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G---~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKG---LKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSS---CCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 46788899999988877666555443 3477666
No 486
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=64.18 E-value=4 Score=36.47 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=21.8
Q ss_pred CcHHHHHhhh--------hhhcCCc--EEEEcCCCCchhhHhH
Q 015595 56 PSAIQQRAVM--------PIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 56 ~~~~Q~~~~~--------~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
+..-|.+++. .+++|.+ ++.-|.||||||....
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 4445655554 3455655 4679999999997643
No 487
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=64.14 E-value=5.5 Score=37.42 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=19.4
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHH
Q 015595 67 IIKGRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 67 ~~~~~~~iv~a~tGsGKT~~~~~~ 90 (404)
+..|.-+.+.+|+|+|||+.....
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Confidence 446778899999999999776654
No 488
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=64.08 E-value=4.4 Score=32.47 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchhhHhH
Q 015595 72 DVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 72 ~~iv~a~tGsGKT~~~~ 88 (404)
-.+|.||+|+|||.+.-
T Consensus 25 ~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLD 41 (203)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46889999999997644
No 489
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=63.98 E-value=52 Score=25.98 Aligned_cols=112 Identities=13% Similarity=0.192 Sum_probs=69.9
Q ss_pred CeEEEEecchhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHhcCCCcEEEEc----CccccCCCCCCCCEEEEcc
Q 015595 271 TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT----DVWARGLDVQQVSLVINYD 346 (404)
Q Consensus 271 ~k~lIf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t----~~~~~Gid~p~~~~vi~~~ 346 (404)
.++++++++....+.+.+.+.+.+..+..+.+.+... -...+.. +...+|+|+- ..+..-+++| ...
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~--v~~a~~~-~~~~dVIISRGgta~~lr~~~~iP------VV~ 75 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTRA--SKIAFGL-QDEVDAIISRGATSDYIKKSVSIP------SIS 75 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHH--HHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC------EEE
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHH--HHHHHHh-cCCCeEEEECChHHHHHHHhCCCC------EEE
Confidence 4788888888887777776666666777777775333 3334445 5667899876 3444556665 234
Q ss_pred CCCChhhhhhhccccCCCCCceeEEEEeccCcHHHHHHHHHHHcccc
Q 015595 347 LPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQI 393 (404)
Q Consensus 347 ~p~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (404)
.+.|.-++++.+-++.+.+. ..+++ -.+.-...+..+.+.+...+
T Consensus 76 I~~s~~Dil~al~~a~~~~~-kIavv-g~~~~~~~~~~~~~ll~~~i 120 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGN-ELALI-AYKHSIVDKHEIEAMLGVKI 120 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCS-EEEEE-EESSCSSCHHHHHHHHTCEE
T ss_pred EcCCHhHHHHHHHHHHhhCC-cEEEE-eCcchhhHHHHHHHHhCCce
Confidence 46888888888888877653 22222 22333334455666665543
No 490
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=63.97 E-value=3 Score=34.93 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchhhHh
Q 015595 69 KGRDVIAQAQSGTGKTSMI 87 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~ 87 (404)
.|.-+.+.||.|+|||+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp TTCEEEEECCSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666789999999999553
No 491
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=63.82 E-value=2.1 Score=34.45 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=14.6
Q ss_pred EEEEcCCCCchhhHhHHH
Q 015595 73 VIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 73 ~iv~a~tGsGKT~~~~~~ 90 (404)
+++.|+.|||||+.+-..
T Consensus 3 I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 678999999999776543
No 492
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=63.82 E-value=3.8 Score=34.16 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 015595 69 KGRDVIAQAQSGTGKTSMIA 88 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~ 88 (404)
.|.-+.+.||.|+|||+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGK 47 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46677899999999996543
No 493
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=63.78 E-value=1.6 Score=43.43 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=29.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHhhh-hhhcCCcEEEEcCCCCchhhHhHH
Q 015595 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVM-PIIKGRDVIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~-~~~~~~~~iv~a~tGsGKT~~~~~ 89 (404)
..|++..-.+.+.+.+.+.-...... ...... .+..++.+++.||+|+|||+.+-.
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~-~~~~~~~~~~~~~~vLL~GppGtGKT~Laka 530 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEH-PDKFLKFGMTPSKGVLFYGPPGCGKTLLAKA 530 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSS-CTTTTCCCCCCCCCCCCBCCTTSSHHHHHHH
T ss_pred ccccccccchhhhhhHHHHHHhhhhc-hHHHHhcCCCCCceeEEECCCCCCHHHHHHH
Confidence 45666555555666665532110000 000000 123456799999999999976443
No 494
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=63.57 E-value=5.6 Score=38.63 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=38.1
Q ss_pred cccccccCCC-CHHHHHHHHHCCCC--CCcHHH--HHhhhhhhc---CCcEEEEcCCCCchhhHhHHHHHh
Q 015595 31 AITSFDAMGI-KDDLLRGIYQYGFE--KPSAIQ--QRAVMPIIK---GRDVIAQAQSGTGKTSMIALTVCQ 93 (404)
Q Consensus 31 ~~~~~~~~~l-~~~~~~~l~~~~~~--~~~~~Q--~~~~~~~~~---~~~~iv~a~tGsGKT~~~~~~~~~ 93 (404)
..++|..+++ ++...+........ .|..+. ..++..++. .+.+++.|..|+|||...=..+-.
T Consensus 47 avNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~y 117 (697)
T 1lkx_A 47 STNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQF 117 (697)
T ss_dssp EECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHH
Confidence 3456777774 56666665543322 343333 345555443 457899999999999775554433
No 495
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=63.51 E-value=5.4 Score=42.97 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=33.7
Q ss_pred CcEEEEcCCCCchhhHhHHHHHhhhhcCCCceeEEEEcccHHHHHHH
Q 015595 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (404)
Q Consensus 71 ~~~iv~a~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~ 117 (404)
+-+.+.+|.|||||+.++..+.+....+. .++|+.+-.+|-...
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~---~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHALDPIY 1475 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEECTTSCCCHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCC---eEEEEecCCCCCHHH
Confidence 55789999999999998888777655544 488888866665554
No 496
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=63.45 E-value=29 Score=24.28 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=37.6
Q ss_pred HHHHhhhhcCCCCeEEEEec------chhhHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHH
Q 015595 259 DTLCDLYDTLTITQAVIFCN------TKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEF 316 (404)
Q Consensus 259 ~~l~~~l~~~~~~k~lIf~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 316 (404)
..+..+++ ..+++||.. ....|.+..+.|.+.++....++=..+...++++.+..
T Consensus 9 ~~v~~~i~---~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~ 69 (109)
T 3ipz_A 9 DTLEKLVN---SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYS 69 (109)
T ss_dssp HHHHHHHT---SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHHc---cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHH
Confidence 34444444 468999988 48999999999999988766555444455555555443
No 497
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=63.44 E-value=3.9 Score=33.57 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCchhhHhHHH
Q 015595 69 KGRDVIAQAQSGTGKTSMIALT 90 (404)
Q Consensus 69 ~~~~~iv~a~tGsGKT~~~~~~ 90 (404)
.+.-+++.|+.|+|||+.+-..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l 46 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEV 46 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4566889999999999776543
No 498
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=63.41 E-value=4.6 Score=36.06 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=18.6
Q ss_pred hhhhhhcCCc--EEEEcCCCCchhhHhHH
Q 015595 63 AVMPIIKGRD--VIAQAQSGTGKTSMIAL 89 (404)
Q Consensus 63 ~~~~~~~~~~--~iv~a~tGsGKT~~~~~ 89 (404)
++..+++|.+ ++.-|.||||||.+..-
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 3445566755 56789999999977543
No 499
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=67.23 E-value=1.5 Score=34.06 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=44.2
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHHccccCeeEEEEEcCcchHHHHHHH----hcCCCeEEeChHHHHHHHHcc-CCCccc
Q 015595 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRK-TLRTRA 175 (404)
Q Consensus 101 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~-~~~~~~ 175 (404)
+.++||.|+++.-+....+.++.. +..+..++|+....++...+ .....|+|+|. .+... .++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~Gid~~~~~ 100 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAARGIDIPDVS 100 (170)
Confidence 456999999998888877777654 46677777776544332222 23467888882 33332 355566
Q ss_pred ceEE
Q 015595 176 IKLL 179 (404)
Q Consensus 176 ~vIi 179 (404)
+||.
T Consensus 101 ~Vi~ 104 (170)
T 2yjt_D 101 HVFN 104 (170)
Confidence 6663
No 500
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=63.25 E-value=3.7 Score=36.43 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=19.2
Q ss_pred hhhhhhcCCc--EEEEcCCCCchhhHhH
Q 015595 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (404)
Q Consensus 63 ~~~~~~~~~~--~iv~a~tGsGKT~~~~ 88 (404)
.+..+++|.+ ++..|.||||||....
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 4556677765 4668999999997643
Done!