BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015596
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GIN|A Chain A, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|B Chain B, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|C Chain C, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|D Chain D, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|E Chain E, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|F Chain F, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
Length = 188
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 10 SRIHHGAVEERHDVRHYLQVEVQPKAHI-ETEATNPQANYSNCFDDDGRLKRTGNFWTTS 68
++++ G +++R + L V ++ H+ E + +A YS F D G L G + T
Sbjct: 53 NKLYTGDLKKRVGITAGLCVVIE---HVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYE 109
Query: 69 SHIITAVIGSGVLSLAWAIAQLGWVAGPTVL 99
+ G+G+ A+ +L + PT L
Sbjct: 110 DSFLAITGGAGIFEGAYGQVKLQQLVYPTKL 140
>pdb|2DIO|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 2 With Bound
Inhibitor Vernolic Acid
pdb|2DIO|B Chain B, Crystal Structure Of The Allene Oxide Cyclase 2 With Bound
Inhibitor Vernolic Acid
pdb|2DIO|C Chain C, Crystal Structure Of The Allene Oxide Cyclase 2 With Bound
Inhibitor Vernolic Acid
Length = 188
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 10 SRIHHGAVEERHDVRHYLQVEVQPKAHI-ETEATNPQANYSNCFDDDGRLKRTGNFWTTS 68
++++ G +++R + L V ++ H+ E + +A YS F D G L G + T
Sbjct: 53 NKLYTGDLKKRVGITAGLCVVIE---HVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYE 109
Query: 69 SHIITAVIGSGVLSLAWAIAQLGWVAGPTVL 99
+ G+G+ A+ +L + PT L
Sbjct: 110 DSFLAITGGAGIFEGAYGQVKLQQLVYPTKL 140
>pdb|2BRJ|A Chain A, X-Ray Structure Of The Allene Oxide Cyclase From
Arabidopsis Thaliana
pdb|2BRJ|B Chain B, X-Ray Structure Of The Allene Oxide Cyclase From
Arabidopsis Thaliana
pdb|2BRJ|C Chain C, X-Ray Structure Of The Allene Oxide Cyclase From
Arabidopsis Thaliana
Length = 188
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 10 SRIHHGAVEERHDVRHYLQVEVQPKAHI-ETEATNPQANYSNCFDDDGRLKRTGNFWTTS 68
++++ G +++R + L V ++ H+ E + +A YS F D G L G + T
Sbjct: 53 NKLYTGDLKKRVGITAGLCVVIE---HVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYE 109
Query: 69 SHIITAVIGSGVLSLAWAIAQLGWVAGPTVL 99
+ G+G+ A+ +L + PT L
Sbjct: 110 DSFLAITGGAGIFEGAYGQVKLQQLVYPTKL 140
>pdb|1SAT|A Chain A, Crystal Structure Of The 50 Kda Metallo Protease From S.
Marcescens
Length = 471
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 92 WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFC 147
+ A P + + A+ +LY ANL R+GD V G + T D + +KVIF
Sbjct: 230 YAAAPLLDDIAAIQHLYGANL---STRTGDTVYGFNSNTGRDFLSTTSNSQKVIFA 282
>pdb|1SRP|A Chain A, Structural Analysis Of Serratia Protease
Length = 471
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 92 WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFC 147
+ A P + + A+ +LY ANL R+GD V G + T D + +KVIF
Sbjct: 230 YAAAPLLDDIAAIQHLYGANL---STRTGDTVYGFNSNTGRDFLSTTSNSQKVIFA 282
>pdb|1AF0|A Chain A, Serratia Protease In Complex With Inhibitor
Length = 471
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 92 WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFC 147
+ A P + + A+ +LY ANL R+GD V G + T D + +KVIF
Sbjct: 230 YAAAPLLDDIAAIQHLYGANL---STRTGDTVYGFNSNTGRDFLSTTSNSQKVIFA 282
>pdb|1SMP|A Chain A, Crystal Structure Of A Complex Between Serratia Marcescens
Metallo-Protease And An Inhibitor From Erwinia
Chrysanthemi
Length = 471
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 92 WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFC 147
+ A P + + A+ +LY ANL R+GD V G + T D + +KVIF
Sbjct: 230 YAAAPLLDDIAAIQHLYGANL---STRTGDTVYGFNSNTGRDFLSTTSNSQKVIFA 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,109,828
Number of Sequences: 62578
Number of extensions: 488883
Number of successful extensions: 1167
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 9
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)