Query 015596
Match_columns 404
No_of_seqs 218 out of 1402
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:47:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 6.9E-52 1.5E-56 407.0 23.5 318 55-393 31-437 (437)
2 KOG1304 Amino acid transporter 100.0 4.4E-47 9.5E-52 367.1 22.1 308 59-390 44-449 (449)
3 PTZ00206 amino acid transporte 100.0 2.5E-45 5.4E-50 369.6 24.2 305 60-391 58-465 (467)
4 PLN03074 auxin influx permease 100.0 6.1E-43 1.3E-47 351.0 25.5 319 59-403 43-464 (473)
5 PF01490 Aa_trans: Transmembra 100.0 1.6E-44 3.5E-49 359.7 4.6 313 60-386 1-407 (409)
6 KOG1305 Amino acid transporter 100.0 1.6E-36 3.6E-41 296.9 26.1 309 60-393 4-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 1.1E-38 2.4E-43 292.0 -1.7 332 53-400 108-524 (524)
8 COG0814 SdaC Amino acid permea 99.9 4.6E-26 1E-30 225.8 25.4 302 59-381 6-406 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.9 1.8E-19 3.8E-24 177.7 25.5 268 61-360 2-367 (394)
10 PRK10483 tryptophan permease; 99.8 4.1E-19 8.8E-24 174.0 22.8 271 57-358 6-373 (414)
11 PRK09664 tryptophan permease T 99.8 1.3E-18 2.8E-23 170.3 21.8 267 62-358 9-374 (415)
12 PRK13629 threonine/serine tran 99.8 2.4E-18 5.1E-23 168.6 22.6 304 63-389 20-441 (443)
13 PRK15132 tyrosine transporter 99.8 2.5E-18 5.5E-23 169.0 21.7 267 63-359 4-363 (403)
14 TIGR00837 araaP aromatic amino 99.8 4.3E-18 9.4E-23 168.2 17.1 262 67-358 2-359 (381)
15 TIGR00814 stp serine transport 99.7 1.6E-16 3.5E-21 156.5 19.5 285 63-364 4-385 (397)
16 PRK10655 potE putrescine trans 99.4 2.1E-10 4.5E-15 115.6 23.7 158 58-224 4-246 (438)
17 KOG1287 Amino acid transporter 99.3 6.4E-12 1.4E-16 123.8 9.5 279 56-360 8-388 (479)
18 PRK10644 arginine:agmatin anti 99.3 1.4E-09 3.1E-14 109.7 25.3 161 57-226 5-250 (445)
19 PRK10435 cadB lysine/cadaverin 99.2 2.6E-09 5.7E-14 107.5 23.6 160 57-226 2-246 (435)
20 PRK10249 phenylalanine transpo 99.2 5.9E-09 1.3E-13 105.7 23.0 280 57-357 18-394 (458)
21 PRK15049 L-asparagine permease 99.2 1E-08 2.2E-13 104.9 24.5 279 58-357 26-405 (499)
22 TIGR03810 arg_ornith_anti argi 99.1 1.3E-08 2.8E-13 103.5 23.9 276 60-358 1-380 (468)
23 PRK11021 putative transporter; 99.1 1.8E-08 4E-13 100.6 24.7 150 63-221 2-231 (410)
24 TIGR00905 2A0302 transporter, 99.1 2.5E-08 5.5E-13 101.5 24.6 160 59-226 6-257 (473)
25 PRK11387 S-methylmethionine tr 99.1 2.1E-08 4.6E-13 102.0 24.1 163 57-227 11-266 (471)
26 TIGR00930 2a30 K-Cl cotranspor 99.1 2.5E-08 5.3E-13 108.4 24.6 160 58-224 74-337 (953)
27 PRK11049 D-alanine/D-serine/gl 99.1 3.9E-08 8.4E-13 100.0 24.3 160 57-225 17-269 (469)
28 TIGR01773 GABAperm gamma-amino 99.1 3.2E-08 6.8E-13 100.2 22.5 162 57-227 9-261 (452)
29 PRK10836 lysine transporter; P 99.0 6.2E-08 1.3E-12 99.0 24.3 164 55-226 10-264 (489)
30 PRK10238 aromatic amino acid t 99.0 3.4E-08 7.4E-13 100.1 22.2 282 55-357 7-385 (456)
31 PRK10746 putative transport pr 99.0 7.6E-08 1.6E-12 97.6 24.4 283 57-358 7-388 (461)
32 TIGR00909 2A0306 amino acid tr 99.0 7.8E-08 1.7E-12 96.6 22.3 205 59-275 2-307 (429)
33 PRK10580 proY putative proline 99.0 1.8E-07 4E-12 94.8 25.1 157 57-222 6-254 (457)
34 PRK11357 frlA putative fructos 99.0 1.1E-07 2.4E-12 96.1 22.3 159 57-223 5-251 (445)
35 TIGR00913 2A0310 amino acid pe 99.0 1.7E-07 3.7E-12 95.5 23.4 156 59-221 1-251 (478)
36 TIGR00911 2A0308 L-type amino 98.9 6.8E-08 1.5E-12 99.1 20.2 163 56-226 38-294 (501)
37 TIGR00906 2A0303 cationic amin 98.9 3.2E-07 6.9E-12 95.1 23.1 276 57-357 25-410 (557)
38 TIGR00908 2A0305 ethanolamine 98.9 4.5E-07 9.8E-12 91.5 22.6 157 57-221 4-245 (442)
39 PRK10197 gamma-aminobutyrate t 98.8 5.3E-07 1.1E-11 91.1 21.7 262 72-357 4-367 (446)
40 TIGR00912 2A0309 spore germina 98.8 1.9E-07 4.1E-12 91.6 16.7 160 61-230 2-241 (359)
41 PF13520 AA_permease_2: Amino 98.7 9.5E-07 2.1E-11 88.6 18.8 273 63-359 2-376 (426)
42 COG0531 PotE Amino acid transp 98.6 1.5E-05 3.3E-10 80.7 23.7 162 58-228 10-262 (466)
43 TIGR00907 2A0304 amino acid pe 98.4 6.8E-05 1.5E-09 76.6 22.7 59 166-227 219-277 (482)
44 PRK15238 inner membrane transp 98.4 5.6E-05 1.2E-09 77.5 22.1 55 166-223 213-267 (496)
45 COG1113 AnsP Gamma-aminobutyra 98.3 2.1E-05 4.6E-10 77.2 16.4 279 57-357 10-388 (462)
46 TIGR03813 put_Glu_GABA_T putat 98.3 0.00013 2.8E-09 74.4 22.4 54 172-228 202-255 (474)
47 TIGR00910 2A0307_GadC glutamat 98.2 0.00035 7.6E-09 71.8 22.7 51 168-221 198-248 (507)
48 TIGR03428 ureacarb_perm permea 98.2 0.0016 3.4E-08 66.5 26.9 163 57-228 10-274 (475)
49 COG0833 LysP Amino acid transp 98.1 5.6E-05 1.2E-09 75.8 13.8 280 57-356 41-426 (541)
50 PF03845 Spore_permease: Spore 98.1 3E-05 6.6E-10 74.8 11.3 158 61-229 1-236 (320)
51 PF00324 AA_permease: Amino ac 97.5 0.00012 2.5E-09 74.8 5.6 151 72-230 7-263 (478)
52 KOG1286 Amino acid transporter 97.4 0.00053 1.1E-08 70.5 9.2 280 56-357 26-422 (554)
53 KOG1289 Amino acid transporter 97.0 0.024 5.2E-07 57.2 15.5 65 163-230 251-315 (550)
54 KOG3832 Predicted amino acid t 97.0 0.0013 2.9E-08 57.6 5.2 53 66-118 16-68 (319)
55 TIGR02358 thia_cytX probable h 96.0 0.8 1.7E-05 45.4 18.7 47 179-229 188-234 (386)
56 TIGR00800 ncs1 NCS1 nucleoside 95.9 0.87 1.9E-05 46.0 18.9 63 164-230 207-274 (442)
57 PRK11375 allantoin permease; P 95.8 2.6 5.6E-05 43.2 22.6 91 180-277 244-341 (484)
58 COG3949 Uncharacterized membra 95.5 0.69 1.5E-05 44.1 14.9 78 64-148 5-85 (349)
59 TIGR02119 panF sodium/pantothe 94.2 7.1 0.00015 39.7 22.6 83 54-143 34-121 (471)
60 COG1457 CodB Purine-cytosine p 94.2 7 0.00015 39.3 20.2 147 178-356 208-359 (442)
61 COG0591 PutP Na+/proline sympo 93.9 8.8 0.00019 39.4 19.8 88 54-147 32-124 (493)
62 KOG2082 K+/Cl- cotransporter K 93.8 1.1 2.3E-05 47.2 12.7 187 188-397 434-646 (1075)
63 PF02554 CstA: Carbon starvati 92.9 0.64 1.4E-05 45.1 9.0 90 55-149 45-134 (376)
64 TIGR00835 agcS amino acid carr 92.8 0.79 1.7E-05 45.8 9.9 48 61-109 46-94 (425)
65 PF00474 SSF: Sodium:solute sy 92.8 1.6 3.5E-05 43.4 12.3 78 59-143 5-83 (406)
66 PRK09442 panF sodium/panthothe 92.2 15 0.00033 37.5 23.7 84 54-143 35-122 (483)
67 PRK12488 acetate permease; Pro 90.6 24 0.00052 36.8 24.7 87 53-147 60-149 (549)
68 TIGR00813 sss transporter, SSS 89.8 22 0.00047 35.4 16.9 80 60-146 3-84 (407)
69 PRK11017 codB cytosine permeas 88.1 30 0.00065 34.5 22.3 52 90-148 39-90 (404)
70 COG0814 SdaC Amino acid permea 87.5 6.6 0.00014 39.3 11.3 182 199-388 222-409 (415)
71 COG1966 CstA Carbon starvation 86.8 1.4 3E-05 44.9 5.9 89 55-148 45-133 (575)
72 TIGR00796 livcs branched-chain 86.8 29 0.00062 34.3 15.1 57 166-225 186-243 (378)
73 PRK15015 carbon starvation pro 86.5 3.3 7.1E-05 43.3 8.5 81 65-150 86-166 (701)
74 PHA02764 hypothetical protein; 80.6 15 0.00034 35.0 9.6 83 59-148 11-96 (399)
75 PF02133 Transp_cyt_pur: Perme 78.9 1.7 3.7E-05 43.8 3.1 83 58-147 5-89 (440)
76 TIGR02711 symport_actP cation/ 77.8 93 0.002 32.4 23.7 81 54-142 61-143 (549)
77 TIGR02121 Na_Pro_sym sodium/pr 75.0 1E+02 0.0022 31.5 23.9 88 54-144 30-119 (487)
78 PRK15433 branched-chain amino 71.2 1.2E+02 0.0026 30.6 16.0 58 165-225 195-253 (439)
79 PRK09395 actP acetate permease 70.8 1.4E+02 0.003 31.1 23.6 86 54-146 63-150 (551)
80 PF05525 Branch_AA_trans: Bran 67.0 1.5E+02 0.0032 29.9 15.0 41 64-104 5-48 (427)
81 KOG1288 Amino acid transporter 65.8 1.9E+02 0.0042 30.9 15.4 53 167-222 297-349 (945)
82 PRK10484 putative transporter; 60.8 2.1E+02 0.0045 29.6 24.1 85 53-144 31-116 (523)
83 PRK15419 proline:sodium sympor 60.4 2.1E+02 0.0045 29.4 24.2 42 53-94 33-75 (502)
84 COG1914 MntH Mn2+ and Fe2+ tra 59.1 2E+02 0.0043 28.9 17.1 54 305-358 325-378 (416)
85 PRK13183 psbN photosystem II r 57.7 9.2 0.0002 25.2 2.0 31 200-230 4-34 (46)
86 PF02468 PsbN: Photosystem II 54.9 11 0.00023 24.6 1.9 28 203-230 4-31 (43)
87 CHL00020 psbN photosystem II p 53.9 9 0.00019 24.9 1.5 28 203-230 4-31 (43)
88 PF05805 L6_membrane: L6 membr 52.8 84 0.0018 27.9 7.8 65 328-392 43-117 (195)
89 KOG4812 Golgi-associated prote 52.7 47 0.001 30.3 6.3 78 314-395 162-255 (262)
90 PRK12768 CysZ-like protein; Re 47.8 2.2E+02 0.0048 26.2 10.2 28 187-219 9-36 (240)
91 COG5052 YOP1 Protein involved 46.4 1.5E+02 0.0033 25.8 8.2 21 338-358 61-81 (186)
92 COG5264 VTC1 Vacuolar transpor 42.5 35 0.00075 27.7 3.5 78 58-149 31-108 (126)
93 PF02447 GntP_permease: GntP f 35.9 4.8E+02 0.01 26.4 11.5 84 310-393 234-321 (441)
94 PRK05415 hypothetical protein; 30.2 3.1E+02 0.0068 26.7 8.5 51 64-115 70-120 (341)
95 COG4709 Predicted membrane pro 27.9 56 0.0012 28.7 2.7 51 63-117 77-128 (195)
96 PF01235 Na_Ala_symp: Sodium:a 27.8 6.4E+02 0.014 25.3 13.8 60 59-119 16-79 (416)
97 PLN02680 carbon-monoxide oxyge 27.7 3.6E+02 0.0078 24.7 8.0 67 198-268 76-142 (232)
98 COG1114 BrnQ Branched-chain am 27.5 6.4E+02 0.014 25.3 17.1 88 310-403 316-407 (431)
99 PF08006 DUF1700: Protein of u 27.1 52 0.0011 28.6 2.5 13 7-19 16-28 (181)
100 PRK11281 hypothetical protein; 26.4 1E+03 0.022 27.3 14.4 30 199-228 541-570 (1113)
101 PF07760 DUF1616: Protein of u 25.0 3.4E+02 0.0073 25.6 7.8 41 314-356 6-46 (287)
102 PHA02680 ORF090 IMV phosphoryl 24.7 3.2E+02 0.0069 20.8 5.9 61 166-230 13-73 (91)
103 PHA03048 IMV membrane protein; 24.6 3E+02 0.0065 21.0 5.7 61 166-232 13-73 (93)
104 PRK11026 ftsX cell division AB 23.3 3.2E+02 0.007 26.1 7.4 20 380-399 289-308 (309)
105 KOG4580 Component of vacuolar 22.9 3.1E+02 0.0067 21.7 5.7 69 58-133 16-84 (112)
106 COG3559 TnrB3 Putative exporte 22.7 8.1E+02 0.018 24.8 11.6 54 341-394 357-420 (536)
107 PF08019 DUF1705: Domain of un 22.5 4.7E+02 0.01 22.0 8.6 31 326-356 55-87 (156)
108 PF11286 DUF3087: Protein of u 22.5 5.1E+02 0.011 22.4 8.3 42 197-238 12-53 (165)
109 COG1953 FUI1 Cytosine/uracil/t 22.1 8.7E+02 0.019 25.0 20.3 60 178-239 255-318 (497)
110 PRK00701 manganese transport p 21.9 8.3E+02 0.018 24.6 24.0 16 130-145 95-110 (439)
111 KOG2174 Leptin receptor gene-r 21.9 2.5E+02 0.0054 23.0 5.1 52 65-116 66-119 (131)
112 PHA02680 ORF090 IMV phosphoryl 21.4 3.4E+02 0.0073 20.7 5.4 44 339-385 16-62 (91)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-52 Score=406.96 Aligned_cols=318 Identities=42% Similarity=0.754 Sum_probs=284.9
Q ss_pred CCCccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 015596 55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (404)
Q Consensus 55 ~~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l 134 (404)
...++|++|++++.+|.++.++|+|+|+||||++++||+.|++++++++++++||..+|.+|.+.++.+.++|.++|.|+
T Consensus 31 ~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 31 PITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcceeeeeeeeeeEe----------------------------------------------------------
Q 015596 135 VKANLGGKKVIFCGLIQYLNLF---------------------------------------------------------- 156 (404)
Q Consensus 135 ~~~~~G~~~~~l~~~~~~~~l~---------------------------------------------------------- 156 (404)
++++||+++++++...|+++++
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~ 190 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSL 190 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHH
Confidence 9999999998888776655432
Q ss_pred ------------------ec---C--c-h--hhh---HH-HHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHH
Q 015596 157 ------------------VT---G--T-Q--KLW---RS-LQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLF 206 (404)
Q Consensus 157 ------------------~~---~--~-~--~~~---~~-~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~ 206 (404)
.+ . . . ..+ .. ++++|+++|+|++|.++|+||++||+| ++|+|++.+
T Consensus 191 ~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~li 266 (437)
T KOG1303|consen 191 VGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLI 266 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHH
Confidence 00 0 0 0 000 12 799999999999999999999999999 779999999
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCCCcc
Q 015596 207 SIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDL 286 (404)
Q Consensus 207 a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~ 286 (404)
++.+++.+|+.+++.||++|||+++++++.|++ +|.|+...+|+++.+|++.+|+++.+|+.+.+|++...++++ +
T Consensus 267 s~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~ 342 (437)
T KOG1303|consen 267 SYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--F 342 (437)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--c
Confidence 999999999999999999999999999999996 589999999999999999999999999999999998654332 1
Q ss_pred ccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCCcchhHH
Q 015596 287 VTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWL 366 (404)
Q Consensus 287 ~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~~~~~~~ 366 (404)
++ +....|.+.|+.+++.++++|+.+|+|+++++++||+..+++++++|+++|++++|.+++..+|+
T Consensus 343 ------------~~-~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~ 409 (437)
T KOG1303|consen 343 ------------KK-RSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWL 409 (437)
T ss_pred ------------cc-cccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 00 11268999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 015596 367 GLQIL-NVSCFFITLVAAIGSVAGVVLD 393 (404)
Q Consensus 367 ~~~~~-~~~~~~~~v~~~~~si~~ii~~ 393 (404)
+.+.+ .++++++++.+.++++++++.+
T Consensus 410 ~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 410 LNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 99988 7999999999999999988753
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-47 Score=367.14 Aligned_cols=308 Identities=18% Similarity=0.268 Sum_probs=262.0
Q ss_pred cccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHH
Q 015596 59 KRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKAN 138 (404)
Q Consensus 59 ~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~ 138 (404)
++..|..++..|+.|+++|+|+|++|+||+++||+.|.+..++++.++.||++.|++|.+..+++.+....+|++.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999888777776678999999877
Q ss_pred cCC----------Ccceeeeeee----------eeeEe------------------------------------------
Q 015596 139 LGG----------KKVIFCGLIQ----------YLNLF------------------------------------------ 156 (404)
Q Consensus 139 ~G~----------~~~~l~~~~~----------~~~l~------------------------------------------ 156 (404)
+.. +++.++++.. |+-+.
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Ls 203 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKILS 203 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 533 3333332211 11000
Q ss_pred -------------------------ec-----CchhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhH---HH
Q 015596 157 -------------------------VT-----GTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMK---KA 203 (404)
Q Consensus 157 -------------------------~~-----~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~---~~ 203 (404)
.+ ...++-++...+|+.+|||+++.++.|++++||+| ++|. ++
T Consensus 204 p~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gV 279 (449)
T KOG1304|consen 204 PFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGV 279 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccCh----hhcCCccch
Confidence 00 01112358899999999999999999999999999 9999 99
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCC
Q 015596 204 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPK 283 (404)
Q Consensus 204 ~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~ 283 (404)
+..++.+++++|+.+|++||++|||++++.++.|+| + +|+.+.+++++++++.++||++++|..+.+|+.+.++...
T Consensus 280 Ln~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~ 356 (449)
T KOG1304|consen 280 LNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSE 356 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCc
Confidence 999999999999999999999999999999999997 3 8999999999999999999999999999999987654321
Q ss_pred CccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCC---
Q 015596 284 SDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGR--- 360 (404)
Q Consensus 284 ~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~--- 360 (404)
. + .++..+.+|+.+++++..+|.++|+++.+++++||++++.+.+++|+++++..++.+.
T Consensus 357 ~--------------~---~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~ 419 (449)
T KOG1304|consen 357 N--------------R---KKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGR 419 (449)
T ss_pred c--------------h---hHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCc
Confidence 1 0 1278899999999999999999999999999999999999999999999999876543
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015596 361 GTTRWLGLQILNVSCFFITLVAAIGSVAGV 390 (404)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~v~~~~~si~~i 390 (404)
+.++++.+..+.++|++..++|++.|+.++
T Consensus 420 ~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 420 FMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 456667788888888888899999888653
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=2.5e-45 Score=369.59 Aligned_cols=305 Identities=17% Similarity=0.246 Sum_probs=247.4
Q ss_pred ccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHc
Q 015596 60 RTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANL 139 (404)
Q Consensus 60 r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~ 139 (404)
++++..++++|++|+++|+|+|++|+||+++||+.|++++++++.++.||.++|.++.+. .+. .+|+|+++.++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~----~~~--~sY~~la~~~~ 131 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK----TNI--RTYEGVARVLL 131 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCC--CCHHHHHHHHh
Confidence 467789999999999999999999999999999999999999999999999999999873 333 49999999999
Q ss_pred CCCcceeeeeeeeee--------------------------------------Ee-------------------------
Q 015596 140 GGKKVIFCGLIQYLN--------------------------------------LF------------------------- 156 (404)
Q Consensus 140 G~~~~~l~~~~~~~~--------------------------------------l~------------------------- 156 (404)
|+++++++++.+.+. +.
T Consensus 132 G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i 211 (467)
T PTZ00206 132 GPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTI 211 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHH
Confidence 999887653211100 00
Q ss_pred ------------e-----c--Cc------------h--hh----hHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhh
Q 015596 157 ------------V-----T--GT------------Q--KL----WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKT 199 (404)
Q Consensus 157 ------------~-----~--~~------------~--~~----~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~ 199 (404)
+ . ++ . .. .+.+.++|+++|||.||.+++++++|||+|++ ++
T Consensus 212 ~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~--~~ 289 (467)
T PTZ00206 212 AVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSV--GK 289 (467)
T ss_pred HHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccch--hH
Confidence 0 0 00 0 01 24788999999999999999999999998743 88
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc
Q 015596 200 MKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK 279 (404)
Q Consensus 200 ~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~ 279 (404)
+.+++..++.+++++|.++|++||+.||++++++++.|++.. .+....+++++.++.++.+||++.+|+|+.+++.+..
T Consensus 290 ~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~-~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~ 368 (467)
T PTZ00206 290 FVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPV-NEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGW 368 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCC-CCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999321 2344677888999999999999999999999987632
Q ss_pred cCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhcc--
Q 015596 280 KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKK-- 357 (404)
Q Consensus 280 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~-- 357 (404)
+.. +.+ . +++...+..++++++++|+++|+++.+++++||++++.++|++|+++|++...
T Consensus 369 --~~~---------~~~---~----~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~ 430 (467)
T PTZ00206 369 --DAR---------KVA---F----WKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFT 430 (467)
T ss_pred --Ccc---------cCc---h----hhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCcc
Confidence 211 111 1 44556667777788999999999999999999999999999999999998421
Q ss_pred CCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015596 358 IGR-GTTRWLGLQILNVSCFFITLVAAIGSVAGVV 391 (404)
Q Consensus 358 ~~~-~~~~~~~~~~~~~~~~~~~v~~~~~si~~ii 391 (404)
+++ ...+|+..+.+.++|++..++|+++|+++++
T Consensus 431 ~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 431 WQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 112 2223456778888999999999999999876
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=6.1e-43 Score=350.99 Aligned_cols=319 Identities=18% Similarity=0.205 Sum_probs=251.1
Q ss_pred cccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC---Cc--c--cccH
Q 015596 59 KRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVT---GQ--R--NYTY 131 (404)
Q Consensus 59 ~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~---g~--~--~~~y 131 (404)
.++++..++.+|+++..+|+|+|+||+||+++||++|++.+++.++++.||.++|.+++....++. +. + ..+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 446789999999999999999999999999999999999999999999999999998754322121 21 1 1378
Q ss_pred HHHHHHHcCCCcceeeeeeeeee------------------------------Ee-------------------------
Q 015596 132 MDAVKANLGGKKVIFCGLIQYLN------------------------------LF------------------------- 156 (404)
Q Consensus 132 ~~l~~~~~G~~~~~l~~~~~~~~------------------------------l~------------------------- 156 (404)
.|+++..+||+++.+......+. ++
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~ 202 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLL 202 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999998765432111100 00
Q ss_pred -------------e---cC-------chhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHH
Q 015596 157 -------------V---TG-------TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTT 213 (404)
Q Consensus 157 -------------~---~~-------~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~ 213 (404)
+ .+ ..+...++.++++++|+|++|.++|+++++||+| ++|+++..++...+++
T Consensus 203 ~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~ 278 (473)
T PLN03074 203 MTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLT 278 (473)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHH
Confidence 0 00 0123357778889999999999999999999999 8999999999999999
Q ss_pred HHHHHHhHHHhhcCCCCc--hhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCCCccccccc
Q 015596 214 FYLLCGCMGYAAFGDLAP--NNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEY 291 (404)
Q Consensus 214 ~y~~~g~~gy~~fG~~~~--~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~ 291 (404)
+|+.+|+.||++|||+++ ++.+.|+|. +. ...++++++++++..+|+++++|+.+.+|+.+..+ +. +
T Consensus 279 ~y~~~~~~gY~~fG~~~~~~s~~l~~lp~--~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~----k-- 347 (473)
T PLN03074 279 LTLPSAAAVYWAFGDELLTHSNAFSLLPR--SG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DT----K-- 347 (473)
T ss_pred HHHHHHHeeeeeechhhhhchhHHhcCCC--ch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--cc----c--
Confidence 999999999999999975 355666752 23 36799999999999999999999999998876321 10 0
Q ss_pred cCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCC------------
Q 015596 292 EIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIG------------ 359 (404)
Q Consensus 292 ~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~------------ 359 (404)
. ...|++.|+.++++++++|+.+|+|+.+++++||++++.++|++|+++|++.++++
T Consensus 348 --------~---~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~ 416 (473)
T PLN03074 348 --------S---ICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPF 416 (473)
T ss_pred --------c---HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcc
Confidence 0 16789999999999999999999999999999999999999999999999854332
Q ss_pred -Ccchh--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccCCCCCC
Q 015596 360 -RGTTR--WLGLQILNVSCFFIT-LVAAIGSVAGVVLDLKTYKPFKTR 403 (404)
Q Consensus 360 -~~~~~--~~~~~~~~~~~~~~~-v~~~~~si~~ii~~~~~~~~f~~~ 403 (404)
.++++ .+.+..+.+++.+++ ++|+++|+.++++++++++-|++-
T Consensus 417 ~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~~ 464 (473)
T PLN03074 417 FLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAKC 464 (473)
T ss_pred cCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhhh
Confidence 11122 255556665555554 699999999999999997766553
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.6e-44 Score=359.73 Aligned_cols=313 Identities=29% Similarity=0.434 Sum_probs=253.1
Q ss_pred ccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHc
Q 015596 60 RTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANL 139 (404)
Q Consensus 60 r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~ 139 (404)
||+|++++++|++|+++|+|+|++|++|+++||+.|++++++++.++.||.++|+++++..+ .+++..+|+|+++.++
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999987643 2333569999999999
Q ss_pred CCCcceeeeeeeeeeEe---------------------------------------------------------------
Q 015596 140 GGKKVIFCGLIQYLNLF--------------------------------------------------------------- 156 (404)
Q Consensus 140 G~~~~~l~~~~~~~~l~--------------------------------------------------------------- 156 (404)
|+++++++++++.++++
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~ 158 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI 158 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence 99999887665443221
Q ss_pred ---------------------e-c----CchhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHH
Q 015596 157 ---------------------V-T----GTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIV 210 (404)
Q Consensus 157 ---------------------~-~----~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~ 210 (404)
. . ...+.++++.++|+++|||.||.+++++++|||+|+ +.++++++...++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~-~~~~~~~~~~~s~~~ 237 (409)
T PF01490_consen 159 FYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPS-KFKKMKKVLSISMII 237 (409)
T ss_pred ceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCc-cccccceeeeehhhh
Confidence 0 0 012345799999999999999999999999999982 113455999999999
Q ss_pred HHHHHHHHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCCCcccccc
Q 015596 211 TTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAE 290 (404)
Q Consensus 211 ~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~ 290 (404)
++++|+++|+.||++||+++++|++.|++. .++...++++++.++++.+||++.+|.++.+++.+.++.+..+...+
T Consensus 238 ~~~~y~~~g~~gy~~fg~~~~~~il~n~~~--~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~- 314 (409)
T PF01490_consen 238 CFIIYLLFGIFGYLAFGDSVQGNILLNLPN--DDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK- 314 (409)
T ss_pred hhHHhhhhhhcccceeeeeecchhhhcCCC--cccccccccccchhhhhhccccccchhHhhhhhheeccccccccccc-
Confidence 999999999999999999999999999973 34678899999999999999999999999999988542000000000
Q ss_pred ccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCCcchhHHH---
Q 015596 291 YEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLG--- 367 (404)
Q Consensus 291 ~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~~~~~~~~--- 367 (404)
..++.++.|+..|+.++++++++|+.+|+++++++++|++++.+++|++|+++|++.+++++++.+++.
T Consensus 315 --------~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~ 386 (409)
T PF01490_consen 315 --------NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILS 386 (409)
T ss_pred --------cccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhh
Confidence 011123778999999999999999999999999999999999999999999999999887765444332
Q ss_pred --HHHHHHHHHHHHHHHHHHH
Q 015596 368 --LQILNVSCFFITLVAAIGS 386 (404)
Q Consensus 368 --~~~~~~~~~~~~v~~~~~s 386 (404)
.+.+.+++++..+.+++++
T Consensus 387 ~~~~~~~~~g~~~~~~~~~~~ 407 (409)
T PF01490_consen 387 ILNWIIIVFGVVLMVFGTYQS 407 (409)
T ss_pred ccceEEEEEeeehhHHhHHHH
Confidence 2333344444444554443
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-36 Score=296.85 Aligned_cols=309 Identities=19% Similarity=0.343 Sum_probs=252.3
Q ss_pred ccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHc
Q 015596 60 RTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANL 139 (404)
Q Consensus 60 r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~ 139 (404)
++.|.+++++|+.|+++|+|++++|+||++.|++.|+++++++++++.++.+++.+|... .+++ +|+++++.++
T Consensus 4 ~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~----~~~~--ty~~l~~~~~ 77 (411)
T KOG1305|consen 4 GKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKK----SGER--TYSSLGDLIF 77 (411)
T ss_pred CccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhh----cCCC--CHHHHHHHHc
Confidence 345789999999999999999999999999999999999999999999999999999984 4444 9999999999
Q ss_pred CCCcceeeeee----------eeee----------------------------Ee-------------------------
Q 015596 140 GGKKVIFCGLI----------QYLN----------------------------LF------------------------- 156 (404)
Q Consensus 140 G~~~~~l~~~~----------~~~~----------------------------l~------------------------- 156 (404)
|+.++....+. .++. +.
T Consensus 78 g~~g~~~~~v~~~~~~~g~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~ 157 (411)
T KOG1305|consen 78 GKLGKVDAAVAVKCFGVGMVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSAL 157 (411)
T ss_pred CCCceeeehhhHHhhhccceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99986433211 0000 00
Q ss_pred ----------------ec-------------CchhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHH
Q 015596 157 ----------------VT-------------GTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFS 207 (404)
Q Consensus 157 ----------------~~-------------~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a 207 (404)
.. .....++.+.++++++|||.||.|..++++|||+| +.++++++...+
T Consensus 158 s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~ 235 (411)
T KOG1305|consen 158 SLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDR--SVKKIQRVSNIA 235 (411)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCc--hHHHHHHHHHHH
Confidence 00 01112578999999999999999999999999998 448899999999
Q ss_pred HHHHHHHHHHHHhHHHhhcCCCCchhhhcccCCCCCh----HHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCC
Q 015596 208 IIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPY----WLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPK 283 (404)
Q Consensus 208 ~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~----~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~ 283 (404)
...++++|..+|.+||+.|||++.+|++.+++..... +....++..+.++++..+|+..+|+|..+++.+....|+
T Consensus 236 ~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~ 315 (411)
T KOG1305|consen 236 IILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPG 315 (411)
T ss_pred HHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCC
Confidence 9999999999999999999999999999998754332 235789999999999999999999999998877443333
Q ss_pred CccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCCcch
Q 015596 284 SDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTT 363 (404)
Q Consensus 284 ~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~~~~ 363 (404)
. ++ ..| .++......+++.+.+.|+.+|+++.+++++||+++..++|++|+++|++..|. .++
T Consensus 316 ~----~~--------~s~---~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~ 378 (411)
T KOG1305|consen 316 L----TS--------FSG---KRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSR 378 (411)
T ss_pred C----CC--------ccc---eehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccc
Confidence 1 00 111 556778888889999999999999999999999999999999999999998876 222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015596 364 RWLGLQILNVSCFFITLVAAIGSVAGVVLD 393 (404)
Q Consensus 364 ~~~~~~~~~~~~~~~~v~~~~~si~~ii~~ 393 (404)
.....+...++++.+.+++++.-+.++..+
T Consensus 379 ~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 379 EPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334556677778888888877777766543
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-38 Score=291.99 Aligned_cols=332 Identities=17% Similarity=0.241 Sum_probs=271.6
Q ss_pred CCCCCccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc---ccc
Q 015596 53 DDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQ---RNY 129 (404)
Q Consensus 53 ~~~~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~---~~~ 129 (404)
+.+++.+.+.+.|+|.+|++|++-|.=|++||+|....||+ ++..++.++.+++||..+|++|....++ +|+ ...
T Consensus 108 ~G~Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRd 185 (524)
T KOG4303|consen 108 DGHGEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRD 185 (524)
T ss_pred cCCCCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCC-CCcEEEeeh
Confidence 33466778889999999999999999999999999999998 8999999999999999999999976554 443 236
Q ss_pred cHHHHHHHHcCCC-cceeeeeeeeeeE------------------e-----------------------------ec---
Q 015596 130 TYMDAVKANLGGK-KVIFCGLIQYLNL------------------F-----------------------------VT--- 158 (404)
Q Consensus 130 ~y~~l~~~~~G~~-~~~l~~~~~~~~l------------------~-----------------------------~~--- 158 (404)
+|.+++..++++. |...+.++|.+.+ | ++
T Consensus 186 sYvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lS 265 (524)
T KOG4303|consen 186 SYVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFLKDLKIVSRLS 265 (524)
T ss_pred hHHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHHHHHHHHHHHH
Confidence 9999999998776 4344444433221 1 00
Q ss_pred --------------------C-chhhh----------HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHH
Q 015596 159 --------------------G-TQKLW----------RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFS 207 (404)
Q Consensus 159 --------------------~-~~~~~----------~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a 207 (404)
. .+..| +++.++|+++|+|..|..+|.++.+|++| .+|...+.++
T Consensus 266 f~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~Ws 341 (524)
T KOG4303|consen 266 FFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWS 341 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCCh----hHheeeeehH
Confidence 0 01111 36789999999999999999999999999 8899999999
Q ss_pred HHHHHHHHHHHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCCCccc
Q 015596 208 IIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLV 287 (404)
Q Consensus 208 ~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~~ 287 (404)
-+...++-.++|..||+.||+.+++.|++|+|. .....++|+++++..+.|||+-.+...+.+|+-+-+..|...|
T Consensus 342 HIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~---qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~F- 417 (524)
T KOG4303|consen 342 HIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN---QSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPF- 417 (524)
T ss_pred HHHHHHHHHHHHHheeeeechhhHHHHhcCCCc---cchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCC-
Confidence 999999999999999999999999999999962 2446799999999999999999988999898877555555433
Q ss_pred cccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCCcchhHHH
Q 015596 288 TAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLG 367 (404)
Q Consensus 288 ~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~~~~~~~~ 367 (404)
.+.|+.+ -+++ -+.+.+|..+++.+.++|+.+|.|..+++++|++.++.++|+.|++||++++.+.........
T Consensus 418 pscys~D-g~Lk-----~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~f 491 (524)
T KOG4303|consen 418 PSCYSPD-GSLK-----EWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRF 491 (524)
T ss_pred ceeeCCC-cchh-----hheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 2222211 1122 345678999999999999999999999999999999999999999999999876654445567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 015596 368 LQILNVSCFFITLVAAIGSVAGVVLDLKTYKPF 400 (404)
Q Consensus 368 ~~~~~~~~~~~~v~~~~~si~~ii~~~~~~~~f 400 (404)
...+.+.|.++++.|.+-|-..++++++...||
T Consensus 492 D~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~~ 524 (524)
T KOG4303|consen 492 DQGIIIMGCSVCVSGVYFSSMELIRAINSADSD 524 (524)
T ss_pred heeEEEEeeeEEEEeEehhhHHHHHHHhccCCC
Confidence 778888889999999999999999999987664
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.95 E-value=4.6e-26 Score=225.80 Aligned_cols=302 Identities=18% Similarity=0.180 Sum_probs=219.7
Q ss_pred cccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHH
Q 015596 59 KRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKAN 138 (404)
Q Consensus 59 ~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~ 138 (404)
+.+.+..++++++.+++||+|+|++|++++..|++.+++++++.+.+++++.++++|+..+.+. +..+|.+++++.
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~----~~~~~~~~~~~~ 81 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN----GKASITSLVEDY 81 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CcccHHHHHHHH
Confidence 4455799999999999999999999999999999999999999999999999999999985432 224899999999
Q ss_pred cCCCcceeeeeeeeeeEe--------------------------------------------------------------
Q 015596 139 LGGKKVIFCGLIQYLNLF-------------------------------------------------------------- 156 (404)
Q Consensus 139 ~G~~~~~l~~~~~~~~l~-------------------------------------------------------------- 156 (404)
+|++++++.+....+.++
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 999999877654333221
Q ss_pred ------------ec-------C-----chhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHH
Q 015596 157 ------------VT-------G-----TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTT 212 (404)
Q Consensus 157 ------------~~-------~-----~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~ 212 (404)
+. . .........++|+++|||+||+++++++++||++++ ++.+|+...+..+..
T Consensus 162 v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~--~~~~k~~~~~~~~~~ 239 (415)
T COG0814 162 VIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK--KAVRKAILIGSLIAL 239 (415)
T ss_pred HHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh--HHHHHHHHHHHHHHH
Confidence 00 0 122235789999999999999999999999998742 359999999999999
Q ss_pred HHHHHHHhHHHhhcCCCCchhhhcccCCCC-----------ChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccC
Q 015596 213 TFYLLCGCMGYAAFGDLAPNNLLTGFGFYN-----------PYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKW 281 (404)
Q Consensus 213 ~~y~~~g~~gy~~fG~~~~~~il~~~~~~~-----------~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~ 281 (404)
++|+.+++++|..+|+.+.++++.+.+..+ ........+++..+++..||--+....++.+++.+.+
T Consensus 240 vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~-- 317 (415)
T COG0814 240 VLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK-- 317 (415)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh--
Confidence 999999999999999999999999985311 1113334444555555555544445555555555532
Q ss_pred CCCccccccccCCCCCccccccchhhHH--HHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCC
Q 015596 282 PKSDLVTAEYEIPIPFWGVYQLNLFRLV--WRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIG 359 (404)
Q Consensus 282 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~ 359 (404)
.++ +. +++..+.+.. .....++....++...|..+.+++.+|+..+..+.++.|...+.+....+
T Consensus 318 ~~~------~~-------~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~ 384 (415)
T COG0814 318 SNS------KP-------GRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALK 384 (415)
T ss_pred ccC------cc-------cchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcee
Confidence 010 00 0111122333 33445556777788889999999999999999999999999998876655
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 015596 360 RGTTRWLGLQILNVSCFFITLV 381 (404)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~v~ 381 (404)
+++.++.....+.++|++..+.
T Consensus 385 ~~~g~~~~~~~v~~~Gi~~~~~ 406 (415)
T COG0814 385 VYGGNFLLLLLVLLFGILVILS 406 (415)
T ss_pred ecCCCchhHHHHHHHHHHHHHH
Confidence 5443222333444444444433
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.85 E-value=1.8e-19 Score=177.72 Aligned_cols=268 Identities=19% Similarity=0.240 Sum_probs=203.2
Q ss_pred cccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcC
Q 015596 61 TGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLG 140 (404)
Q Consensus 61 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G 140 (404)
+.+.+++++.+..+.||+|+|+||.+.+..|++++++++++...+++++..++.|...+.++ ..+|.+++++.+|
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-----~~~~~~~a~~~lG 76 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-----GSSLTSMAEKYLG 76 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHhC
Confidence 34689999999999999999999999999999999999999999999999999999874332 4699999999999
Q ss_pred CCcceeeeeeeeeeEe----------------------------------------------------------------
Q 015596 141 GKKVIFCGLIQYLNLF---------------------------------------------------------------- 156 (404)
Q Consensus 141 ~~~~~l~~~~~~~~l~---------------------------------------------------------------- 156 (404)
|+++++..+...+.++
T Consensus 77 ~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~ 156 (394)
T PF03222_consen 77 KKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIIS 156 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999876554322111
Q ss_pred -----------ec-----C----chhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHH
Q 015596 157 -----------VT-----G----TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216 (404)
Q Consensus 157 -----------~~-----~----~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~ 216 (404)
.+ . ..++-..+.++|++++||+.|.++|++.+.+++. .|+.+|++.++..+..++|+
T Consensus 157 ~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl 233 (394)
T PF03222_consen 157 FIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAIIIGSLIPLVMYL 233 (394)
T ss_pred HHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHHHHHHHHHHHHH
Confidence 00 0 1122246789999999999999999999999965 28899999999998888888
Q ss_pred HHHhHHHh-----------hcCCCCch--hhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCC
Q 015596 217 LCGCMGYA-----------AFGDLAPN--NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPK 283 (404)
Q Consensus 217 ~~g~~gy~-----------~fG~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~ 283 (404)
+.-...-. .-|++..+ ..+.+. .+..+...+..++..+++.+||--....++|.+++.+.. ++
T Consensus 234 ~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~ 309 (394)
T PF03222_consen 234 LWVFSILGSLPREQFAEAIAQGGNVSALVSALANV--SGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KN 309 (394)
T ss_pred HHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhh--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Cc
Confidence 65333322 22222211 112221 123456678899999999999999998999999888732 22
Q ss_pred CccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCC-hHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCC
Q 015596 284 SDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGR 360 (404)
Q Consensus 284 ~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~-~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~ 360 (404)
. + ..|...-.+..+..+++|...|+ |-..+++.| .+..++..++|+++.+|.|++++
T Consensus 310 ~----~---------------~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 310 N----S---------------SGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred c----c---------------cchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 1 0 22333444455678888998885 789999999 89999999999999999876554
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.84 E-value=4.1e-19 Score=173.98 Aligned_cols=271 Identities=15% Similarity=0.123 Sum_probs=204.1
Q ss_pred CccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~ 136 (404)
.++++++.+++++.+..+.||+|+|++|.+.++.|+++++++++++..+..||..+++|...+.++ ..++..+++
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-----g~~~~tma~ 80 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-----GSSFDTITK 80 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHH
Confidence 345678899999999999999999999999999999999999999999999999999999864322 468999999
Q ss_pred HHcCCCcceeeeeeeeeeEe------------------------------------------------------------
Q 015596 137 ANLGGKKVIFCGLIQYLNLF------------------------------------------------------------ 156 (404)
Q Consensus 137 ~~~G~~~~~l~~~~~~~~l~------------------------------------------------------------ 156 (404)
+.+||.|+.+..++..+.++
T Consensus 81 ~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~ 160 (414)
T PRK10483 81 DLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK 160 (414)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 99999988764332211000
Q ss_pred --------------ec------Cc-h--hhh-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHH
Q 015596 157 --------------VT------GT-Q--KLW-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTT 212 (404)
Q Consensus 157 --------------~~------~~-~--~~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~ 212 (404)
++ .. . ..| ..+.++|++++||++|.++|++.+.+++.+ ++.+|++.++..+..
T Consensus 161 i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~---~kir~~I~iGs~Ipl 237 (414)
T PRK10483 161 VITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDP---KTIVKCLVYGTLMAL 237 (414)
T ss_pred HHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCH---HHHHHHHHHHHHHHH
Confidence 00 00 0 011 266899999999999999999999998642 789999999999999
Q ss_pred HHHHHHHhHHHhh-----------cCCCCchhhhcccCC-CCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhcc
Q 015596 213 TFYLLCGCMGYAA-----------FGDLAPNNLLTGFGF-YNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKK 280 (404)
Q Consensus 213 ~~y~~~g~~gy~~-----------fG~~~~~~il~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~ 280 (404)
++|++.-...... -|++. +.++..+.. .+..+...+..++..+++.+||--+...++|.+.+.+..
T Consensus 238 v~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~- 315 (414)
T PRK10483 238 ALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGF- 315 (414)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 9999744433332 23332 112222211 123455567888889999999999999999999988732
Q ss_pred CCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCC-hHHHHHHHhhhhhhhHHHHhhHHhHHhhccC
Q 015596 281 WPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKI 358 (404)
Q Consensus 281 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~-~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~ 358 (404)
+++ . ..|...-.+..+..++++...|+ |-..++..|.. ..++..++|+++.++.||+
T Consensus 316 -~~~----~---------------~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 316 -DDS----A---------------MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred -CCc----c---------------ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 221 0 12333344566789999999996 88899999976 6788899999999998875
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.82 E-value=1.3e-18 Score=170.25 Aligned_cols=267 Identities=16% Similarity=0.142 Sum_probs=199.9
Q ss_pred ccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCC
Q 015596 62 GNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGG 141 (404)
Q Consensus 62 ~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~ 141 (404)
.+...+++.+..+.||+|+|++|.+.++.|+.+++++++++.....||..++.|...+.++ ..++..++++.+|+
T Consensus 9 ~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-----g~~l~tma~~~LG~ 83 (415)
T PRK09664 9 HSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-----GSSFNTITKDLIGN 83 (415)
T ss_pred cchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHcCh
Confidence 3678899999999999999999999999999999999999999999999999999875432 56899999999999
Q ss_pred CcceeeeeeeeeeEe-----------------------------------------------------------------
Q 015596 142 KKVIFCGLIQYLNLF----------------------------------------------------------------- 156 (404)
Q Consensus 142 ~~~~l~~~~~~~~l~----------------------------------------------------------------- 156 (404)
+|+++..+..++.++
T Consensus 84 ~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f 163 (415)
T PRK09664 84 TWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISF 163 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 988765443211100
Q ss_pred ----------e------cCc-hh----hh-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHH
Q 015596 157 ----------V------TGT-QK----LW-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTF 214 (404)
Q Consensus 157 ----------~------~~~-~~----~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~ 214 (404)
+ +.+ .. .+ ..+.++|++++||++|.++|++.+.+++.+ ++.+|++..+..+..++
T Consensus 164 ~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~---~~~~kaIl~Gs~IpLvi 240 (415)
T PRK09664 164 VIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRK---DKLIKSVVFGSLLALVI 240 (415)
T ss_pred HHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccH---HHHHHHHHHHHHHHHHH
Confidence 0 000 00 01 266799999999999999999999998642 78888888888888888
Q ss_pred HHH--HHhHH---------HhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCC
Q 015596 215 YLL--CGCMG---------YAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPK 283 (404)
Q Consensus 215 y~~--~g~~g---------y~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~ 283 (404)
|.+ ..+.| -..-|+++.+-+..-....+..+...+.+++..+++.+||--+...++|.+.+.+.. ++
T Consensus 241 Y~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~--~~ 318 (415)
T PRK09664 241 YLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKI--DN 318 (415)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CC
Confidence 853 23333 123444443322221111134567778889999999999999999999999988732 22
Q ss_pred CccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCC-hHHHHHHHhhhhhhhHHHHhhHHhHHhhccC
Q 015596 284 SDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKI 358 (404)
Q Consensus 284 ~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~-~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~ 358 (404)
++ ..|...-.+..+..++++...|+ |-..++..|.. ..++..++|+++-+|.||+
T Consensus 319 ~~-------------------~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 319 SH-------------------GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred cc-------------------ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 10 12333344566789999999997 88899999986 6799999999999999875
No 12
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.82 E-value=2.4e-18 Score=168.60 Aligned_cols=304 Identities=13% Similarity=0.143 Sum_probs=221.4
Q ss_pred cHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCC
Q 015596 63 NFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGK 142 (404)
Q Consensus 63 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~ 142 (404)
..+.....+..+.||+|+|+||-..+..|.+++++++++...+++++.+.|.|.....+ ++..+|.+++++.||++
T Consensus 20 ~d~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~----~~~~~i~~v~~~~lG~~ 95 (443)
T PRK13629 20 SDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS----NPSGNITETVEEHFGKT 95 (443)
T ss_pred ccchHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----CCCCCHHHHHHHHcChh
Confidence 45677799999999999999999999999999999999999999999999999886432 12458999999999999
Q ss_pred cceeeeeeeeeeEe------------------------------------------------------------------
Q 015596 143 KVIFCGLIQYLNLF------------------------------------------------------------------ 156 (404)
Q Consensus 143 ~~~l~~~~~~~~l~------------------------------------------------------------------ 156 (404)
++.+.++..++.++
T Consensus 96 g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l 175 (443)
T PRK13629 96 GGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASL 175 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 88765432211000
Q ss_pred ---------------ecC-c--------h-hh-hHHHHHHHHHHHhhhhhhhHHHHHHHhcCC-----Chh--hhhhHHH
Q 015596 157 ---------------VTG-T--------Q-KL-WRSLQALGAIAFAYSFSIILLEIQDTIRSP-----PAE--YKTMKKA 203 (404)
Q Consensus 157 ---------------~~~-~--------~-~~-~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-----~~~--~~~~~~~ 203 (404)
... + . .. -..+.++|+++|||+.|+++|++...+|+. .+| .+|.+++
T Consensus 176 ~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~ri 255 (443)
T PRK13629 176 VLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQI 255 (443)
T ss_pred HHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHH
Confidence 000 0 0 00 126788999999999999999999985432 013 5889999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcCCCC-----chhh------hcccCCC-CC-----hHHHHHHHHHHHHHHHhhhhccc
Q 015596 204 TLFSIIVTTTFYLLCGCMGYAAFGDLA-----PNNL------LTGFGFY-NP-----YWLIDIANAAIVVHLVGAYQVFC 266 (404)
Q Consensus 204 ~~~a~~~~~~~y~~~g~~gy~~fG~~~-----~~~i------l~~~~~~-~~-----~~~~~~~~~~~~i~~~~s~pl~~ 266 (404)
+..+..+..++|++.-+.+-..-+++. ++|+ .+.++.. +. .++..+..+...+++..||--+.
T Consensus 256 i~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~ 335 (443)
T PRK13629 256 ISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHY 335 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988887777666542 1121 1112110 01 33566777778889999999999
Q ss_pred ccHHHHHHHHhhc-cC-CCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHH
Q 015596 267 QPLFAFVEKWSAK-KW-PKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLT 344 (404)
Q Consensus 267 ~p~~~~~e~~~~~-~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~ 344 (404)
..++|.+++++.+ .. ++. + + .+.+..+.....++.+.+++++..-|++-.+++-+|+...+.+.
T Consensus 336 LGl~E~l~gl~~~~~~~~~~----~----~------~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il 401 (443)
T PRK13629 336 LGTLEGLNGLILKFGYKGDK----T----K------VSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLL 401 (443)
T ss_pred HHHHHHHHHHHHHHHhhccc----c----c------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHH
Confidence 9999999998842 11 111 0 0 11124556666777889999999999999999999999999999
Q ss_pred HHhhHHhHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015596 345 VYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAG 389 (404)
Q Consensus 345 fi~P~l~yl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~si~~ 389 (404)
|++|....+|...-++.+.+. .+++.+++|+++..+.+++
T Consensus 402 ~l~P~y~i~kvp~l~~yr~~~-----~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 402 CLLPMYAIRKAPSLAKYRGRL-----DNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred HHHHHHHHHccHHHHHhCCCc-----hhHHHHHHHHHHHHHHHHh
Confidence 999999999976555544332 1344456666666666655
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.81 E-value=2.5e-18 Score=168.98 Aligned_cols=267 Identities=15% Similarity=0.169 Sum_probs=203.1
Q ss_pred cHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCC
Q 015596 63 NFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGK 142 (404)
Q Consensus 63 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~ 142 (404)
+.+.+++.+..+.||+|+|+||.+.+..|+++++++++++..+..|+.++++|+..+.+ +..++.+++++.+|++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~-----~~~~~~~~a~~~LG~~ 78 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP-----ADTGLGTLAKRYLGRY 78 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCCCHHHHHHHHhChH
Confidence 67899999999999999999999999999999999999999988888888999765322 1358999999999999
Q ss_pred cceeeeeeeeeeEe------------------------------------------------------------------
Q 015596 143 KVIFCGLIQYLNLF------------------------------------------------------------------ 156 (404)
Q Consensus 143 ~~~l~~~~~~~~l~------------------------------------------------------------------ 156 (404)
|+++..+...+.++
T Consensus 79 g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~ 158 (403)
T PRK15132 79 GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLV 158 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 98765443221110
Q ss_pred -------ec-Cchh----hhH---HHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhH
Q 015596 157 -------VT-GTQK----LWR---SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 221 (404)
Q Consensus 157 -------~~-~~~~----~~~---~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~ 221 (404)
.+ +... .|+ .+.++|++++||+.|.++|++.+.+++.+ ++.+|++.++..+..++|++.-..
T Consensus 159 ~~~~~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~---~~~~k~i~~Gs~i~li~yl~W~~~ 235 (403)
T PRK15132 159 VMLALMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNI---RKLRWVFIIGSAIPLVAYIFWQLA 235 (403)
T ss_pred HHHHHHHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 011 67999999999999999999999998642 789999999999999999977666
Q ss_pred HHhhcCCCC-----c-----hhhhcccCC-CCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCCCcccccc
Q 015596 222 GYAAFGDLA-----P-----NNLLTGFGF-YNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAE 290 (404)
Q Consensus 222 gy~~fG~~~-----~-----~~il~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~ 290 (404)
....-+.+. + ++++..+.. .+..+...++.++..+++.+||--+...++|.+.+.+.++ +. +
T Consensus 236 ~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~~----~- 308 (403)
T PRK15132 236 TLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--NT----V- 308 (403)
T ss_pred HHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--cc----c-
Confidence 665544331 1 122222211 1235667788889999999999999999999999887321 10 0
Q ss_pred ccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCC-hHHHHHHHhhhhhhhHHHHhhHHhHHhhccCC
Q 015596 291 YEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIG 359 (404)
Q Consensus 291 ~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~-~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~ 359 (404)
..|.....+..+.++++|...|+ |....++.|. ..+++.+++|+++.+|.|+.+
T Consensus 309 --------------~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~ 363 (403)
T PRK15132 309 --------------GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQN 363 (403)
T ss_pred --------------cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence 22445556677789999999996 7788888886 578999999999999988654
No 14
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.78 E-value=4.3e-18 Score=168.25 Aligned_cols=262 Identities=16% Similarity=0.130 Sum_probs=194.7
Q ss_pred HHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCCccee
Q 015596 67 TSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIF 146 (404)
Q Consensus 67 a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~l 146 (404)
+++.++++++|+|++++|.++++.|...+++.+++.++++.++..++.|+..+.++ ..+|.+.+++++||++.++
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-----~~~~~~~~~~~~G~~~g~~ 76 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-----GASFNTIAKDLLGKTGNII 76 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHhCHHHHHH
Confidence 34567899999999999999999999999999999999999999999999865432 3489999999999998776
Q ss_pred eeeeeeeeEe----------------------------------------------------------------------
Q 015596 147 CGLIQYLNLF---------------------------------------------------------------------- 156 (404)
Q Consensus 147 ~~~~~~~~l~---------------------------------------------------------------------- 156 (404)
++...++.++
T Consensus 77 ~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii 156 (381)
T TIGR00837 77 AGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFS 156 (381)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432111000
Q ss_pred -----ec-----Cc----hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 015596 157 -----VT-----GT----QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG 222 (404)
Q Consensus 157 -----~~-----~~----~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g 222 (404)
.+ +. ....+...+++...++|++|.+++++..++++++ |+.+|+..++..+++++|+++....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~---k~i~raii~g~~i~~~lY~l~~~~~ 233 (381)
T TIGR00837 157 GLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNV---KKVKKSILIGSAIALVLYILWQLAT 233 (381)
T ss_pred HHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 0122467888999999999999999999998652 8999999999999999999887776
Q ss_pred HhhcCCCCchhhh----------cccCC-CCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCCCccccccc
Q 015596 223 YAAFGDLAPNNLL----------TGFGF-YNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEY 291 (404)
Q Consensus 223 y~~fG~~~~~~il----------~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~ 291 (404)
....+.+.-.+.. ..+.. ....|...++.++..++++.|+.......++.+.+.+.+. + ++
T Consensus 234 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~--~----~~-- 305 (381)
T TIGR00837 234 MGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFD--D----SK-- 305 (381)
T ss_pred hCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--c----cc--
Confidence 6665544211111 11100 1234556788889999999999999888898887776321 1 00
Q ss_pred cCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChH-HHHHHHhhhhhhhHHHHhhHHhHHhhccC
Q 015596 292 EIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFN-DVVGILGAMGFWPLTVYFPIEMYKAQKKI 358 (404)
Q Consensus 292 ~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~-~i~~liGa~~~~~l~fi~P~l~yl~~~~~ 358 (404)
..|.....+..+...++|.+.|+.. ..++..| ++..++.+++|++++++.||+
T Consensus 306 -------------~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 306 -------------KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred -------------CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 1133445555577888899999766 8999999 888999999999999998765
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.73 E-value=1.6e-16 Score=156.51 Aligned_cols=285 Identities=11% Similarity=0.082 Sum_probs=208.6
Q ss_pred cHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCC
Q 015596 63 NFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGK 142 (404)
Q Consensus 63 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~ 142 (404)
.++...+.+..+++|+|+|++|...++.||+..++..++...+++++.+++.|.....+ .+..++.|++++.|||+
T Consensus 4 ~d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~----~p~~~i~~~~~~~fGk~ 79 (397)
T TIGR00814 4 TDTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK----NPCEDITEVVEEHFGKN 79 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHcCHH
Confidence 46788999999999999999999999999999999999999999999999999864322 11358999999999999
Q ss_pred cceeeeeeeeeeEe------------------------------------------------------------------
Q 015596 143 KVIFCGLIQYLNLF------------------------------------------------------------------ 156 (404)
Q Consensus 143 ~~~l~~~~~~~~l~------------------------------------------------------------------ 156 (404)
++.+.++...+.++
T Consensus 80 ~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l 159 (397)
T TIGR00814 80 WGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLIL 159 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 87655443221100
Q ss_pred ----------e-------cC-c-hhhhHHHHHHHHHHHhhhhhhhHHHHHHHh----cCCChhhhhhHHHHHHHHHHHHH
Q 015596 157 ----------V-------TG-T-QKLWRSLQALGAIAFAYSFSIILLEIQDTI----RSPPAEYKTMKKATLFSIIVTTT 213 (404)
Q Consensus 157 ----------~-------~~-~-~~~~~~~~~~~~~~faf~~~~~i~~i~~~m----~~p~~~~~~~~~~~~~a~~~~~~ 213 (404)
. .+ . ...-++..+++..++||.+|.+++++.... ++|..+.+|.+|+...+..+.++
T Consensus 160 ~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~ 239 (397)
T TIGR00814 160 VLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVA 239 (397)
T ss_pred HHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 112247799999999999999999998333 32322358899999999999999
Q ss_pred HHHHHHhHHHhhcCCCCc-----hhh--hcccC-CCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCCCc
Q 015596 214 FYLLCGCMGYAAFGDLAP-----NNL--LTGFG-FYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSD 285 (404)
Q Consensus 214 ~y~~~g~~gy~~fG~~~~-----~~i--l~~~~-~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~ 285 (404)
+|++.-+.+....+++.- +|+ +..+. ..+..+...+..+...+++..|+--+...++|.+++++.+..+.
T Consensus 240 ~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~-- 317 (397)
T TIGR00814 240 TVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKM-- 317 (397)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc--
Confidence 999888888887776531 121 11110 01223555677778888999999999999999999988322111
Q ss_pred cccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCCcchh
Q 015596 286 LVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTR 364 (404)
Q Consensus 286 ~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~~~~~ 364 (404)
++. +. +.+........++.+.+++++..-|++-.+++-+|+...+.+.|++|...-+|...-++.+.+
T Consensus 318 ---~~~--~~------~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~~ 385 (397)
T TIGR00814 318 ---KGK--KI------NIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYRGR 385 (397)
T ss_pred ---ccc--cc------CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhCCC
Confidence 000 01 111445556667778899999999999999999999999999999999999997655555443
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.35 E-value=2.1e-10 Score=115.59 Aligned_cols=158 Identities=13% Similarity=0.115 Sum_probs=115.3
Q ss_pred ccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596 58 LKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (404)
Q Consensus 58 ~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~ 137 (404)
++|+.+.++++...+++++|+|++.+|..+++.|- .+++.+++.+++.......+.|.....+...| .+.|. ++
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG--~y~y~---~~ 77 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSGG--MGGYA---EY 77 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc--hHHHH---HH
Confidence 46678899999999999999999999999888887 57888888998888888888887765543333 23444 47
Q ss_pred HcCCCcceeeeeee-----------------ee---------------------------eEe-----------------
Q 015596 138 NLGGKKVIFCGLIQ-----------------YL---------------------------NLF----------------- 156 (404)
Q Consensus 138 ~~G~~~~~l~~~~~-----------------~~---------------------------~l~----------------- 156 (404)
.+|+...++++... +. |+.
T Consensus 78 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l 157 (438)
T PRK10655 78 AFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVI 157 (438)
T ss_pred HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 78876543322110 00 000
Q ss_pred -------------ecC--c-----hh----hhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHH
Q 015596 157 -------------VTG--T-----QK----LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTT 212 (404)
Q Consensus 157 -------------~~~--~-----~~----~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~ 212 (404)
.+. . .. ..++..++....|+|.|...+..+-.|+|+|+ |+.+|++..+..+++
T Consensus 158 ~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~ 234 (438)
T PRK10655 158 IPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAA 234 (438)
T ss_pred HHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHH
Confidence 000 0 00 12355667788999999999999999999994 789999999999999
Q ss_pred HHHHHHHhHHHh
Q 015596 213 TFYLLCGCMGYA 224 (404)
Q Consensus 213 ~~y~~~g~~gy~ 224 (404)
++|++.......
T Consensus 235 ~~Y~l~~~~~~~ 246 (438)
T PRK10655 235 VIYIVSTNVIAG 246 (438)
T ss_pred HHHHHHHHHHHh
Confidence 999987665443
No 17
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.31 E-value=6.4e-12 Score=123.82 Aligned_cols=279 Identities=17% Similarity=0.208 Sum_probs=177.6
Q ss_pred CCccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 015596 56 GRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVA-GPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD 133 (404)
Q Consensus 56 ~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~-g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~ 133 (404)
.+.+|+.+.+.++..+++++||+|++..|.. .+++|-++ +++++++.++++..+.....|.....+...| .+.|-+
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg--d~ayi~ 85 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG--DYAYIS 85 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc--chhhHH
Confidence 4457788999999999999999999999998 66776665 8888999999999999999999887665444 245554
Q ss_pred HHHHHcCCCcceeee------------------eeee-----------------------------eeEe----------
Q 015596 134 AVKANLGGKKVIFCG------------------LIQY-----------------------------LNLF---------- 156 (404)
Q Consensus 134 l~~~~~G~~~~~l~~------------------~~~~-----------------------------~~l~---------- 156 (404)
++||+....+.. +..| +|++
T Consensus 86 ---~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~ 162 (479)
T KOG1287|consen 86 ---EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQI 162 (479)
T ss_pred ---HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 567765432110 0011 0111
Q ss_pred -------------------------ecC---c------hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHH
Q 015596 157 -------------------------VTG---T------QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKK 202 (404)
Q Consensus 157 -------------------------~~~---~------~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~ 202 (404)
.++ + .+.-++..++-...|||.++.++..+-.|+|||. |++++
T Consensus 163 ~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~---ktLP~ 239 (479)
T KOG1287|consen 163 VFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR---RTLPR 239 (479)
T ss_pred HHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCcc---ccchH
Confidence 010 1 1122477899999999999999999999999995 89999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcc------cCCC-CChHHHHHHHHHHHHHHHhhhhcccccHHHHHHH
Q 015596 203 ATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTG------FGFY-NPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEK 275 (404)
Q Consensus 203 ~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~------~~~~-~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~ 275 (404)
+..+|+.+++++|+++.+.++.+-- ++.++.+ |... -+.+. ..+-++..++.+.+.--.++.....+..
T Consensus 240 Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~ 315 (479)
T KOG1287|consen 240 AILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYA 315 (479)
T ss_pred HHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999998877553 2333222 1000 01121 2333444444444433322222222222
Q ss_pred Hhhc-cCCCCccccccccC-CCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHH
Q 015596 276 WSAK-KWPKSDLVTAEYEI-PIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYK 353 (404)
Q Consensus 276 ~~~~-~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl 353 (404)
..++ +-|+. .+..+.. ..| +. ..++.++..++..+..|+..+++.++-.-.....+.+=+++++
T Consensus 316 ~areG~LP~~--~s~i~~~~~TP--------~~----allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~l 381 (479)
T KOG1287|consen 316 GAREGHLPAF--FSMISVRRFTP--------RP----ALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWL 381 (479)
T ss_pred HHHccCccHH--HHhhcCCCCCC--------hH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11321 1110000 122 11 2223334444455567999999999988888888999999999
Q ss_pred hhccCCC
Q 015596 354 AQKKIGR 360 (404)
Q Consensus 354 ~~~~~~~ 360 (404)
|.++++.
T Consensus 382 R~k~p~~ 388 (479)
T KOG1287|consen 382 RWKHPPL 388 (479)
T ss_pred HhhCCCC
Confidence 9887763
No 18
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.28 E-value=1.4e-09 Score=109.74 Aligned_cols=161 Identities=13% Similarity=0.162 Sum_probs=113.7
Q ss_pred CccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~ 136 (404)
+++|+.+.++++...+++++|+|++.+|...++.|. ..+..+++.++........+.|.....+...| .+.| ++
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG--~y~~---~~ 78 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGG--SYAY---AR 78 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--hhHH---HH
Confidence 456788999999999999999999999998888774 35566777777777777777887766554333 2345 56
Q ss_pred HHcCCCcceeeeeeee--------------------------------------------eeEe----------------
Q 015596 137 ANLGGKKVIFCGLIQY--------------------------------------------LNLF---------------- 156 (404)
Q Consensus 137 ~~~G~~~~~l~~~~~~--------------------------------------------~~l~---------------- 156 (404)
+.+|+...++++...+ +|++
T Consensus 79 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~ 158 (445)
T PRK10644 79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA 158 (445)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 7778764432211100 0000
Q ss_pred --------------ecCc--h---------hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHH
Q 015596 157 --------------VTGT--Q---------KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVT 211 (404)
Q Consensus 157 --------------~~~~--~---------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~ 211 (404)
.+.. . ....+..++....|+|.|......+-+|+|+|+ |+.+|++..++.++
T Consensus 159 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~ 235 (445)
T PRK10644 159 LIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIA 235 (445)
T ss_pred HHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHH
Confidence 0000 0 011244567788999999999999999999994 78999999999999
Q ss_pred HHHHHHHHhHHHhhc
Q 015596 212 TTFYLLCGCMGYAAF 226 (404)
Q Consensus 212 ~~~y~~~g~~gy~~f 226 (404)
+++|+++.+.....-
T Consensus 236 ~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 236 AVCYVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999998887754433
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.23 E-value=2.6e-09 Score=107.53 Aligned_cols=160 Identities=13% Similarity=0.174 Sum_probs=115.1
Q ss_pred CccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~ 136 (404)
+++|+.+.++.+...++++||+|++.+|...++.|-. .+..+++.++........+.|.....+...| .++|.+
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG--~y~y~~--- 75 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGG--PIAYAG--- 75 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--hhHHHH---
Confidence 3577889999999999999999999999999988864 6777788888877777888888766554333 245543
Q ss_pred HHcCCCcceeeeeee-----------------e---------------------------eeEe----------------
Q 015596 137 ANLGGKKVIFCGLIQ-----------------Y---------------------------LNLF---------------- 156 (404)
Q Consensus 137 ~~~G~~~~~l~~~~~-----------------~---------------------------~~l~---------------- 156 (404)
+ +|+...++++... + +|+.
T Consensus 76 ~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~ 154 (435)
T PRK10435 76 E-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLV 154 (435)
T ss_pred H-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3 3443322111100 0 0000
Q ss_pred --------------ecC-----------chhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHH
Q 015596 157 --------------VTG-----------TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVT 211 (404)
Q Consensus 157 --------------~~~-----------~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~ 211 (404)
.+. .....++..++....|+|.+...+...-.|+|||+ |+.+|++..++.++
T Consensus 155 li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv 231 (435)
T PRK10435 155 LIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLA 231 (435)
T ss_pred HHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHH
Confidence 000 01123567788899999999999999999999994 78999999999999
Q ss_pred HHHHHHHHhHHHhhc
Q 015596 212 TTFYLLCGCMGYAAF 226 (404)
Q Consensus 212 ~~~y~~~g~~gy~~f 226 (404)
+++|++..+......
T Consensus 232 ~ilYil~~~~~~~~~ 246 (435)
T PRK10435 232 GIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999998887655443
No 20
>PRK10249 phenylalanine transporter; Provisional
Probab=99.17 E-value=5.9e-09 Score=105.66 Aligned_cols=280 Identities=16% Similarity=0.135 Sum_probs=164.0
Q ss_pred CccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~ 135 (404)
+.+|+.+.++..+..+..+||+|++..|.. .++.|- ..++.+++.+++.......+.|.....+. .| ..-..+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~G----g~~~y~ 91 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SG----SFAHFA 91 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHH
Confidence 466788899999999999999999998775 666676 47888899999999999999998876554 33 333456
Q ss_pred HHHcCCCcceeeeeeee-----------------e-----------------------eEe-------------------
Q 015596 136 KANLGGKKVIFCGLIQY-----------------L-----------------------NLF------------------- 156 (404)
Q Consensus 136 ~~~~G~~~~~l~~~~~~-----------------~-----------------------~l~------------------- 156 (404)
++.+|+...++++...+ + |++
T Consensus 92 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~ 171 (458)
T PRK10249 92 YKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLA 171 (458)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 67778764433221110 0 000
Q ss_pred -------------e-c--C---chh----------hh-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHH
Q 015596 157 -------------V-T--G---TQK----------LW-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLF 206 (404)
Q Consensus 157 -------------~-~--~---~~~----------~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~ 206 (404)
. . . ... .| ++..++....|+|.+...+...-.|+|+|+ |+.+|++..
T Consensus 172 i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~ 248 (458)
T PRK10249 172 IIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQ 248 (458)
T ss_pred HHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHH
Confidence 0 0 0 001 12 357888999999999999999999999984 789999999
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCCc----hhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc-cC
Q 015596 207 SIIVTTTFYLLCGCMGYAAFGDLAP----NNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-KW 281 (404)
Q Consensus 207 a~~~~~~~y~~~g~~gy~~fG~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~-~~ 281 (404)
++...+++|++.........++... +.+..-+......+...+.++..+++.+.+.--.....-+.+...-.+ ..
T Consensus 249 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~l 328 (458)
T PRK10249 249 VVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNA 328 (458)
T ss_pred HHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999998765554444332210 111111100011233344444544554444432222222222222211 11
Q ss_pred CCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcC--ChHHHHHHHhhhhhhhHHHHhhHHhHHhhcc
Q 015596 282 PKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP--FFNDVVGILGAMGFWPLTVYFPIEMYKAQKK 357 (404)
Q Consensus 282 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp--~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~ 357 (404)
|+ +..+.++.+.| ...+.+..++.++..++....| .++.++++.+. ...+.|++|++.+++.++
T Consensus 329 P~--~~~kv~~~~~P--------~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~--~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 329 PK--FLTRVSRRGVP--------INSLMLSGAITSLVVLINYLLPQKAFGLLMALVVA--TLLLNWIMICLAHLRFRA 394 (458)
T ss_pred CH--HHHHhCCCCCC--------HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 21 11111112334 3344444444433333333333 35555555443 467899999999998763
No 21
>PRK15049 L-asparagine permease; Provisional
Probab=99.16 E-value=1e-08 Score=104.87 Aligned_cols=279 Identities=15% Similarity=0.140 Sum_probs=163.7
Q ss_pred ccccccHHHHHHHHHhhhhhHhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596 58 LKRTGNFWTTSSHIITAVIGSGVLSLAW-AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (404)
Q Consensus 58 ~~r~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~ 136 (404)
.+|+.+.++..+..+..+||+|++..|. ++++.|- .+++.+++.+++.......+.|.....+. .| ..-.-++
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~-aG----g~y~y~~ 99 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS-SG----SFVSYAR 99 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHHH
Confidence 5677889999999999999999998877 5788886 46888888999999888889998876554 33 2233445
Q ss_pred HHcCCCcceeeeeeee-----------------e-------------------------eEe------------------
Q 015596 137 ANLGGKKVIFCGLIQY-----------------L-------------------------NLF------------------ 156 (404)
Q Consensus 137 ~~~G~~~~~l~~~~~~-----------------~-------------------------~l~------------------ 156 (404)
+.+|++..++++...+ . |++
T Consensus 100 ~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~ 179 (499)
T PRK15049 100 EFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVL 179 (499)
T ss_pred HHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777764433221100 0 000
Q ss_pred -------------e--cCc-------------hh-----hhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHH
Q 015596 157 -------------V--TGT-------------QK-----LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 203 (404)
Q Consensus 157 -------------~--~~~-------------~~-----~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~ 203 (404)
. ... .. ....+.++....|+|.+...+...-.|+|+|+ |+.+|+
T Consensus 180 ~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrA 256 (499)
T PRK15049 180 AIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKA 256 (499)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHH
Confidence 0 000 00 11244556678999999999999999999994 789999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcCCCCc----hhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc
Q 015596 204 TLFSIIVTTTFYLLCGCMGYAAFGDLAP----NNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK 279 (404)
Q Consensus 204 ~~~a~~~~~~~y~~~g~~gy~~fG~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~ 279 (404)
+..++..+.++|+..........+.+.. +.+..-+....-.+...+.++..+++.+.+.--......+.+...-.+
T Consensus 257 i~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ard 336 (499)
T PRK15049 257 INSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMG 336 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999876655544332211 111111100011233345555555555555433333333333333211
Q ss_pred -cCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcC--ChHHHHHHHhhhhhhhHHHHhhHHhHHhhc
Q 015596 280 -KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP--FFNDVVGILGAMGFWPLTVYFPIEMYKAQK 356 (404)
Q Consensus 280 -~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp--~~~~i~~liGa~~~~~l~fi~P~l~yl~~~ 356 (404)
..|+ +..+-.+.+.| ...++...++.++..++....| .++.++++.+ .+..+.|+++.+.+++.|
T Consensus 337 g~lP~--~f~kv~k~~~P--------~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R 404 (499)
T PRK15049 337 GSAPS--FMAKMSRQHVP--------YAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLR 404 (499)
T ss_pred CCcCH--HHHHhCCCCCC--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 1131 12221122344 3333333333333222332333 2566666665 456889999999998876
Q ss_pred c
Q 015596 357 K 357 (404)
Q Consensus 357 ~ 357 (404)
|
T Consensus 405 ~ 405 (499)
T PRK15049 405 K 405 (499)
T ss_pred H
Confidence 4
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.14 E-value=1.3e-08 Score=103.51 Aligned_cols=276 Identities=14% Similarity=0.123 Sum_probs=160.3
Q ss_pred ccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHH
Q 015596 60 RTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKAN 138 (404)
Q Consensus 60 r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~ 138 (404)
|+.+.++.+...++++||+|++.+|.. .+..|....++.+++.++........+.|.....++..|- .+.| +++.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG-~y~y---~~~~ 76 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGG-VYSY---AKAG 76 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-hhhh---HHhH
Confidence 456789999999999999999999987 4555644456678888888888888888887665543321 3455 5577
Q ss_pred cCCCcceeeeeeee---------------------e-------------------------eEe----------------
Q 015596 139 LGGKKVIFCGLIQY---------------------L-------------------------NLF---------------- 156 (404)
Q Consensus 139 ~G~~~~~l~~~~~~---------------------~-------------------------~l~---------------- 156 (404)
||+...++++...+ . ++.
T Consensus 77 fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~k 156 (468)
T TIGR03810 77 FGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAK 156 (468)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 78764332211000 0 000
Q ss_pred --------------e-----cCc-----------hh-hhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHH
Q 015596 157 --------------V-----TGT-----------QK-LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATL 205 (404)
Q Consensus 157 --------------~-----~~~-----------~~-~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~ 205 (404)
. +.. .. ...+..++....|+|.+......+-.|.|++ |+.+|++.
T Consensus 157 i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~ 232 (468)
T TIGR03810 157 LVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATV 232 (468)
T ss_pred HHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHH
Confidence 0 000 00 1124467778999999999999999999875 89999999
Q ss_pred HHHHHHHHHHHHHHhHHHhhcCCCC----ch----hhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHh
Q 015596 206 FSIIVTTTFYLLCGCMGYAAFGDLA----PN----NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWS 277 (404)
Q Consensus 206 ~a~~~~~~~y~~~g~~gy~~fG~~~----~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~ 277 (404)
.++..++++|+++.+..+...+++. ++ .+..+. -..|...+.+++.+++.+.+.--.....-+.+...-
T Consensus 233 ~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~---~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~a 309 (468)
T TIGR03810 233 IGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHM---VGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMA 309 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHH---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877665443221 11 111111 123444566666666666555443333333332222
Q ss_pred hc-cCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhh-cCChHHHHHHHhhhhhhhHHHHhhHHhHHhh
Q 015596 278 AK-KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISML-LPFFNDVVGILGAMGFWPLTVYFPIEMYKAQ 355 (404)
Q Consensus 278 ~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~-vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~ 355 (404)
++ ..|+ +..+.++.+.| ..-+.....+..+..++... -+.++.+.++.+. ...+.|+++++.+++.
T Consensus 310 rdg~lP~--~f~k~~~~~tP--------~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l 377 (468)
T TIGR03810 310 KDKLMPK--YFGKENANGAP--------TNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYLWSAAYQVKL 377 (468)
T ss_pred hCCCccH--HHHhhCCCCCC--------HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 11 1232 12221122344 23333333332222222111 1346666665543 4578889999988887
Q ss_pred ccC
Q 015596 356 KKI 358 (404)
Q Consensus 356 ~~~ 358 (404)
+++
T Consensus 378 ~~~ 380 (468)
T TIGR03810 378 SWR 380 (468)
T ss_pred HHh
Confidence 543
No 23
>PRK11021 putative transporter; Provisional
Probab=99.14 E-value=1.8e-08 Score=100.60 Aligned_cols=150 Identities=15% Similarity=0.219 Sum_probs=110.6
Q ss_pred cHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCC
Q 015596 63 NFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGG 141 (404)
Q Consensus 63 s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~ 141 (404)
+.|+++...++++||+|++.+|.. .+..|- ..++.+++.++........+.|.....+...| .+. -+++.+|+
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG--~y~---y~~~~~G~ 75 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAGG--PAH---FVGMAFGP 75 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--HHH---hHHHHhCc
Confidence 578999999999999999999886 555664 57888888888888888889998877664333 233 34467787
Q ss_pred Ccceeeeeeeee------------------------------------------eEe-----------------------
Q 015596 142 KKVIFCGLIQYL------------------------------------------NLF----------------------- 156 (404)
Q Consensus 142 ~~~~l~~~~~~~------------------------------------------~l~----------------------- 156 (404)
...++++...++ |+.
T Consensus 76 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~ 155 (410)
T PRK11021 76 RLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGWSSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAI 155 (410)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 754332211100 000
Q ss_pred ---ec--C---------chhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhH
Q 015596 157 ---VT--G---------TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 221 (404)
Q Consensus 157 ---~~--~---------~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~ 221 (404)
.. . .....++..++....|+|.+...+...-+|+|||+ |+++|++..++.+++++|++....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 156 WWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 01122467888999999999999999999999995 789999999999999999987755
No 24
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.11 E-value=2.5e-08 Score=101.48 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=113.3
Q ss_pred cccccHHHHHHHHHhhhhhHhhhHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596 59 KRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLG-WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (404)
Q Consensus 59 ~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G-~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~ 137 (404)
+|+.+.+++++..+++++|+|++.+|...++.| -...++.+++.++........+.|.....+.+.|- .++|. ++
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG-~y~y~---~~ 81 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGG-IYAYA---RE 81 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-hhhhH---Hh
Confidence 567899999999999999999999999976555 33346677888888888888888888765541332 23444 57
Q ss_pred HcCCCcceeeeeeeee----------------------------------------------eEe---------------
Q 015596 138 NLGGKKVIFCGLIQYL----------------------------------------------NLF--------------- 156 (404)
Q Consensus 138 ~~G~~~~~l~~~~~~~----------------------------------------------~l~--------------- 156 (404)
.+|+...++++..+++ ++.
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~ 161 (473)
T TIGR00905 82 GFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIA 161 (473)
T ss_pred HcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 7888754432211100 000
Q ss_pred -----------------ec-------Cch------hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHH
Q 015596 157 -----------------VT-------GTQ------KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLF 206 (404)
Q Consensus 157 -----------------~~-------~~~------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~ 206 (404)
.+ +.. ....+..++....|+|.+......+-.|+|| + |+.+|++..
T Consensus 162 ~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~---r~iPrai~~ 237 (473)
T TIGR00905 162 KLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K---SDVGKATVL 237 (473)
T ss_pred HHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c---ccchHHHHH
Confidence 00 000 1123566778899999999999999999999 3 899999999
Q ss_pred HHHHHHHHHHHHHhHHHhhc
Q 015596 207 SIIVTTTFYLLCGCMGYAAF 226 (404)
Q Consensus 207 a~~~~~~~y~~~g~~gy~~f 226 (404)
++.+++++|++.........
T Consensus 238 ~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 238 GTLGALVIYILITLLSLGVL 257 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 99999999998877644433
No 25
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.11 E-value=2.1e-08 Score=101.96 Aligned_cols=163 Identities=18% Similarity=0.140 Sum_probs=116.5
Q ss_pred CccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~ 135 (404)
+.+|+.+.++..+..++++||+|++..|.. .+..|-...++.+++.+++.......+.|.....+...| +-.-+
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG-----~y~y~ 85 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGA-----FHVYA 85 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----HHHHH
Confidence 357888999999999999999999988776 677786556778888888888888888888876654322 22345
Q ss_pred HHHcCCCcceeeeeeeee----------------------------------------eEe-------------------
Q 015596 136 KANLGGKKVIFCGLIQYL----------------------------------------NLF------------------- 156 (404)
Q Consensus 136 ~~~~G~~~~~l~~~~~~~----------------------------------------~l~------------------- 156 (404)
++.+|+...++++...++ |++
T Consensus 86 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ki~~ 165 (471)
T PRK11387 86 ARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVPVWPWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVVT 165 (471)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 567777644322111100 000
Q ss_pred -----------e-------cCc---------------hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHH
Q 015596 157 -----------V-------TGT---------------QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 203 (404)
Q Consensus 157 -----------~-------~~~---------------~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~ 203 (404)
. +.. ....++..++....|+|.+...+...-.|+|||+ |+++++
T Consensus 166 l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrA 242 (471)
T PRK11387 166 ILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVA 242 (471)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHH
Confidence 0 000 0112366777788999999999999999999994 789999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcC
Q 015596 204 TLFSIIVTTTFYLLCGCMGYAAFG 227 (404)
Q Consensus 204 ~~~a~~~~~~~y~~~g~~gy~~fG 227 (404)
+..++..++++|++..+......+
T Consensus 243 i~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 243 IRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHheecC
Confidence 999999999999988765544443
No 26
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.09 E-value=2.5e-08 Score=108.43 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=108.4
Q ss_pred ccccccHHHHHHHH-HhhhhhHhhhH-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596 58 LKRTGNFWTTSSHI-ITAVIGSGVLS-LAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (404)
Q Consensus 58 ~~r~~s~~~a~~~l-~~~~iG~GiL~-lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~ 135 (404)
+.++.++++.++.- +.+|+|+|++- +++...++|...+++.+++.++++..+..-+.+......++.|- .|. ..
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG---~Y~-yi 149 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG---AYY-LI 149 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH---HHH-HH
Confidence 34566677777777 99999999985 67889999988889999999999999999898887652223332 222 22
Q ss_pred HHHcCCCcceeeeee--------------------------------------------------eeeeEe---------
Q 015596 136 KANLGGKKVIFCGLI--------------------------------------------------QYLNLF--------- 156 (404)
Q Consensus 136 ~~~~G~~~~~l~~~~--------------------------------------------------~~~~l~--------- 156 (404)
.++||+.....++++ ..++++
T Consensus 150 sralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q 229 (953)
T TIGR00930 150 SRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQ 229 (953)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344444321100000 000000
Q ss_pred -------------------ecCc----------------h-------hhhH-HHHHHHHHHHhhhhhhhHHHHHHHhcCC
Q 015596 157 -------------------VTGT----------------Q-------KLWR-SLQALGAIAFAYSFSIILLEIQDTIRSP 193 (404)
Q Consensus 157 -------------------~~~~----------------~-------~~~~-~~~~~~~~~faf~~~~~i~~i~~~m~~p 193 (404)
.... . .... ++..++++.+||.|......+-.|+|+|
T Consensus 230 ~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP 309 (953)
T TIGR00930 230 VLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDP 309 (953)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 0000 0 0111 5667777888999999999999999999
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 015596 194 PAEYKTMKKATLFSIIVTTTFYLLCGCMGYA 224 (404)
Q Consensus 194 ~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~ 224 (404)
. |..++++..++.+++++|+++.+....
T Consensus 310 ~---r~IPratl~ai~i~~vlYllv~~~~~~ 337 (953)
T TIGR00930 310 Q---KAIPKGTLLAILTTTVVYLGSVVLFGA 337 (953)
T ss_pred h---hhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4 789999999999999999999764333
No 27
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.08 E-value=3.9e-08 Score=100.02 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=114.0
Q ss_pred CccccccHHHHHHHHHhhhhhHhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAW-AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~ 135 (404)
+.+|+.+.++..+..++++||+|++-.|. ++++.|. ..+..+++.+++.......+.|.....++ ...+.+.+
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-----~~~~~~ya 90 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLE-----YKSFSDFA 90 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCcHHHHH
Confidence 36778899999999999999999999766 6888887 46777778888777777777776543221 12455678
Q ss_pred HHHcCCCcceeeeeeeee----------------------------------------eEe-------------------
Q 015596 136 KANLGGKKVIFCGLIQYL----------------------------------------NLF------------------- 156 (404)
Q Consensus 136 ~~~~G~~~~~l~~~~~~~----------------------------------------~l~------------------- 156 (404)
++.+|+...++++..+++ |++
T Consensus 91 ~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl~~ 170 (469)
T PRK11049 91 SDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVA 170 (469)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 888888754433221110 000
Q ss_pred -----------e-----cCch----------------hhh-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHH
Q 015596 157 -----------V-----TGTQ----------------KLW-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 203 (404)
Q Consensus 157 -----------~-----~~~~----------------~~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~ 203 (404)
. ++.. +.| ++..++....|+|.|...+...-+|+|+|+ |+++|+
T Consensus 171 l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPra 247 (469)
T PRK11049 171 IVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRA 247 (469)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHH
Confidence 0 0000 011 377889999999999999999999999984 789999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhh
Q 015596 204 TLFSIIVTTTFYLLCGCMGYAA 225 (404)
Q Consensus 204 ~~~a~~~~~~~y~~~g~~gy~~ 225 (404)
+..+...+.++|++.....+..
T Consensus 248 i~~~~~~~~~~y~l~~~~~~~~ 269 (469)
T PRK11049 248 INSIPIRIIMFYVFALIVIMSV 269 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHeee
Confidence 9877777888888777665443
No 28
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.06 E-value=3.2e-08 Score=100.20 Aligned_cols=162 Identities=20% Similarity=0.214 Sum_probs=118.3
Q ss_pred CccccccHHHHHHHHHhhhhhHhhhHHH-HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAVIGSGVLSLA-WAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP-~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~ 135 (404)
+.+|+.+.++..+..++++||+|++.+| .+.+..|- .+++.+++.+++.......+.|.....+.. | ..-+.+
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~-G----g~~~~~ 82 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDT-G----SFSTYA 82 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C----CHHHHH
Confidence 4678889999999999999999999999 55888886 477888888898888888888887665532 2 334556
Q ss_pred HHHcCCCcceeeeeeeee----------------------------------------eEe-------------------
Q 015596 136 KANLGGKKVIFCGLIQYL----------------------------------------NLF------------------- 156 (404)
Q Consensus 136 ~~~~G~~~~~l~~~~~~~----------------------------------------~l~------------------- 156 (404)
++.+|+...++++...++ |++
T Consensus 83 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~ 162 (452)
T TIGR01773 83 DDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIA 162 (452)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 688888755443221110 000
Q ss_pred ------------e---cC-c--------------hhhh-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHH
Q 015596 157 ------------V---TG-T--------------QKLW-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATL 205 (404)
Q Consensus 157 ------------~---~~-~--------------~~~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~ 205 (404)
. .. . .+.+ ++..++....|+|.+...+..+-.|+|||+ |+.+|++.
T Consensus 163 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~ 239 (452)
T TIGR01773 163 IIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATN 239 (452)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHH
Confidence 0 00 0 0111 377888899999999999999999999994 78999998
Q ss_pred HHHHHHHHHHHHHHhHHHhhcC
Q 015596 206 FSIIVTTTFYLLCGCMGYAAFG 227 (404)
Q Consensus 206 ~a~~~~~~~y~~~g~~gy~~fG 227 (404)
.++....++|++.........+
T Consensus 240 ~~~~~~~~~y~l~~~~~~~~~p 261 (452)
T TIGR01773 240 SVIWRIIVFYLGSIFIVVALLP 261 (452)
T ss_pred HHHHHHHHHHHHHHHHHeeEeC
Confidence 8888889999986554444333
No 29
>PRK10836 lysine transporter; Provisional
Probab=99.05 E-value=6.2e-08 Score=99.05 Aligned_cols=164 Identities=15% Similarity=0.093 Sum_probs=113.0
Q ss_pred CCCccccccHHHHHHHHHhhhhhHhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 015596 55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLAW-AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD 133 (404)
Q Consensus 55 ~~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~ 133 (404)
+++.+|+.+.++..+..++++||+|++.+|. +.++.|-...++.+++.+++.......+.|.....+...|. +.|.+
T Consensus 10 ~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~--y~y~~ 87 (489)
T PRK10836 10 APGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSF--ATYGQ 87 (489)
T ss_pred cccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHH
Confidence 3456788899999999999999999999997 57788875578889999999999999999988776643332 22222
Q ss_pred HHHHHcCCCcceeeeee----------------------------------------eeeeEe-----------------
Q 015596 134 AVKANLGGKKVIFCGLI----------------------------------------QYLNLF----------------- 156 (404)
Q Consensus 134 l~~~~~G~~~~~l~~~~----------------------------------------~~~~l~----------------- 156 (404)
+.+|+...++++.. ..+|++
T Consensus 88 ---~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki 164 (489)
T PRK10836 88 ---NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKV 164 (489)
T ss_pred ---HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 33333221111000 000100
Q ss_pred -----------------ecCc-----h-----------hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHH
Q 015596 157 -----------------VTGT-----Q-----------KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 203 (404)
Q Consensus 157 -----------------~~~~-----~-----------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~ 203 (404)
.... . ....+..+.....|+|.+...+..+-.|+|||+ |+.+|+
T Consensus 165 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrA 241 (489)
T PRK10836 165 TTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRA 241 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHH
Confidence 0000 0 011233445556799999999999999999994 789999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhc
Q 015596 204 TLFSIIVTTTFYLLCGCMGYAAF 226 (404)
Q Consensus 204 ~~~a~~~~~~~y~~~g~~gy~~f 226 (404)
+..++..++++|++.........
T Consensus 242 i~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 242 VRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHheec
Confidence 99999999999998876654444
No 30
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.04 E-value=3.4e-08 Score=100.06 Aligned_cols=282 Identities=13% Similarity=0.118 Sum_probs=160.2
Q ss_pred CCCccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 015596 55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD 133 (404)
Q Consensus 55 ~~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~ 133 (404)
+++.+|+.+.++..+..++++||+|++..|.. .++.|- ..++.+++.+++.......+.|.....+. .| .+-+
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-aG----g~y~ 80 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPV-AG----SFSH 80 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC----CHHH
Confidence 34568889999999999999999999988876 666675 56777888888888888888888766553 33 2333
Q ss_pred HHHHHcCCCcceeeeeeeee----------------------------------------eEe-----------------
Q 015596 134 AVKANLGGKKVIFCGLIQYL----------------------------------------NLF----------------- 156 (404)
Q Consensus 134 l~~~~~G~~~~~l~~~~~~~----------------------------------------~l~----------------- 156 (404)
-+++.+|+...++++...++ |++
T Consensus 81 ~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki 160 (456)
T PRK10238 81 FAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKV 160 (456)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35567888654433221110 000
Q ss_pred ---------------ec-Cc-----hh-----hh------HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHH
Q 015596 157 ---------------VT-GT-----QK-----LW------RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKAT 204 (404)
Q Consensus 157 ---------------~~-~~-----~~-----~~------~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~ 204 (404)
.. .. .. .| .+..+++...|+|.|-..+...-.|+|+|+ |+.+|++
T Consensus 161 ~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi 237 (456)
T PRK10238 161 IAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKAT 237 (456)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHH
Confidence 00 00 00 01 345677889999999999999999999994 7899999
Q ss_pred HHHHHHHHHHHHHHHhHHH--hhcCCCC--chhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc-
Q 015596 205 LFSIIVTTTFYLLCGCMGY--AAFGDLA--PNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK- 279 (404)
Q Consensus 205 ~~a~~~~~~~y~~~g~~gy--~~fG~~~--~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~- 279 (404)
..++....++|+..-.... .-+.+-. .+.+...+......+...+.++..++..+.+..-......+.+...-++
T Consensus 238 ~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg 317 (456)
T PRK10238 238 NQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQG 317 (456)
T ss_pred HHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888888875433321 1111110 1111110100011233444555555555544433333333333333211
Q ss_pred cCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcC--ChHHHHHHHhhhhhhhHHHHhhHHhHHhhcc
Q 015596 280 KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP--FFNDVVGILGAMGFWPLTVYFPIEMYKAQKK 357 (404)
Q Consensus 280 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp--~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~ 357 (404)
..|+ +..+-++.+.| ...+.+...+.++..++....| .++.++++.+ .+..+.|.+|.+.+++.+|
T Consensus 318 ~lP~--~f~kv~~~~~P--------~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~ 385 (456)
T PRK10238 318 NAPK--ALASVDKRGVP--------VNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALVINWAMISLAHMKFRR 385 (456)
T ss_pred CccH--HHHhhCcCCCc--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 1131 12221112334 3333333333333332222233 3566666644 3457899999999998765
No 31
>PRK10746 putative transport protein YifK; Provisional
Probab=99.04 E-value=7.6e-08 Score=97.61 Aligned_cols=283 Identities=11% Similarity=0.031 Sum_probs=164.5
Q ss_pred CccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~ 135 (404)
+.+|+.+.++..+..+.++||+|++..|.. .+..|- ..++.+++.+++.+.....+.|.....+. .| .+.+-+
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-sG----g~~~y~ 80 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV-TG----SFAVYA 80 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC----CHHHHH
Confidence 456788899999999999999999987765 777887 46778888888888888888888766543 33 345556
Q ss_pred HHHcCCCcceeeeeeee-----------------e-----------------------eEe-------------------
Q 015596 136 KANLGGKKVIFCGLIQY-----------------L-----------------------NLF------------------- 156 (404)
Q Consensus 136 ~~~~G~~~~~l~~~~~~-----------------~-----------------------~l~------------------- 156 (404)
++.+|+...++++...+ + |++
T Consensus 81 ~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~~ 160 (461)
T PRK10746 81 HRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTT 160 (461)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 67788765433221110 0 000
Q ss_pred ---------------ecC--c----h-----------hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHH
Q 015596 157 ---------------VTG--T----Q-----------KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKAT 204 (404)
Q Consensus 157 ---------------~~~--~----~-----------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~ 204 (404)
..+ . . ...++..++....|+|.+...+...-.|+|||+ |+.+|++
T Consensus 161 i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~---k~iP~Ai 237 (461)
T PRK10746 161 IIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQ---VTLRSAV 237 (461)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh---hHHHHHH
Confidence 000 0 0 011356899999999999999999999999994 8999999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcCCCCch----hhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc-
Q 015596 205 LFSIIVTTTFYLLCGCMGYAAFGDLAPN----NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK- 279 (404)
Q Consensus 205 ~~a~~~~~~~y~~~g~~gy~~fG~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~- 279 (404)
..++....++|++...........+..+ .+...+..........+.++...++.+.+.--.+....+.+...-.+
T Consensus 238 ~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g 317 (461)
T PRK10746 238 GKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNR 317 (461)
T ss_pred HHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9888888899987655544443332111 11111100011222344555555555555433333333333333221
Q ss_pred cCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhh--hhhhHHHHhhHHhHHhhcc
Q 015596 280 KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAM--GFWPLTVYFPIEMYKAQKK 357 (404)
Q Consensus 280 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~--~~~~l~fi~P~l~yl~~~~ 357 (404)
..|+ +..+..+.+.| ...+.......++...+....|+-+.+++.+-++ .+..+.++++++.|++.+|
T Consensus 318 ~lP~--~~~~~~~~g~P--------~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~ 387 (461)
T PRK10746 318 QLPA--AMAKVSRHGVP--------VAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRR 387 (461)
T ss_pred CcCH--HHHHhCCCCCc--------HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 11111112334 2333332222233333444456555554444322 2357888888888888765
Q ss_pred C
Q 015596 358 I 358 (404)
Q Consensus 358 ~ 358 (404)
+
T Consensus 388 ~ 388 (461)
T PRK10746 388 A 388 (461)
T ss_pred h
Confidence 4
No 32
>TIGR00909 2A0306 amino acid transporter.
Probab=98.99 E-value=7.8e-08 Score=96.63 Aligned_cols=205 Identities=18% Similarity=0.135 Sum_probs=129.0
Q ss_pred cccccHHHHHHHHHhhhhhHhhhHHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596 59 KRTGNFWTTSSHIITAVIGSGVLSLAWAIA-QLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (404)
Q Consensus 59 ~r~~s~~~a~~~l~~~~iG~GiL~lP~af~-~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~ 137 (404)
+|+.+.++.++..+++++|+|++.+|.... ..|. ..++.+++.+++.......+.|.....+...| .++|.+ +
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg--~y~~~~---~ 75 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAGS--PYTYAY---E 75 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc--ceeeHH---H
Confidence 467889999999999999999999997644 4454 45667777788887788888888766554323 234443 5
Q ss_pred HcCCCcceeeeee----------------------------------e----------------------eeeEe-----
Q 015596 138 NLGGKKVIFCGLI----------------------------------Q----------------------YLNLF----- 156 (404)
Q Consensus 138 ~~G~~~~~l~~~~----------------------------------~----------------------~~~l~----- 156 (404)
.+||+..++++.. . ++++.
T Consensus 76 ~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~ 155 (429)
T TIGR00909 76 AMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKES 155 (429)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHH
Confidence 6676543221100 0 00000
Q ss_pred -------------------------ec-----C--chhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHH
Q 015596 157 -------------------------VT-----G--TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKAT 204 (404)
Q Consensus 157 -------------------------~~-----~--~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~ 204 (404)
.+ + +....++..++....|+|.+......+..|+|+|+ |+.+|++
T Consensus 156 ~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai 232 (429)
T TIGR00909 156 GKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAI 232 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHH
Confidence 00 0 01122467888899999999999999999999984 7899999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcCCC--C--ch---hhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHH
Q 015596 205 LFSIIVTTTFYLLCGCMGYAAFGDL--A--PN---NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEK 275 (404)
Q Consensus 205 ~~a~~~~~~~y~~~g~~gy~~fG~~--~--~~---~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~ 275 (404)
..++.++.++|++...........+ . ++ .+.... ...+...+..++.++....+.--......+.+..
T Consensus 233 ~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~ 307 (429)
T TIGR00909 233 ILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDL---GQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFA 307 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHh---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876655332211 0 00 111111 1234444566666666666654444433343333
No 33
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.99 E-value=1.8e-07 Score=94.80 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=111.7
Q ss_pred CccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~ 135 (404)
+.+|+.+.++..+..+.+++|+|++.+|.. .+..|- ..++.+++.+++.......+.|.....+...| .++ .+
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg--~y~---y~ 79 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAASS--FSR---YA 79 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HHH---HH
Confidence 456778999999999999999999999876 667776 46888888888888888889998866553322 123 44
Q ss_pred HHHcCCCcceeeeeeeee----------------------------------------eEe-------------------
Q 015596 136 KANLGGKKVIFCGLIQYL----------------------------------------NLF------------------- 156 (404)
Q Consensus 136 ~~~~G~~~~~l~~~~~~~----------------------------------------~l~------------------- 156 (404)
++.+|+...++++...++ |++
T Consensus 80 ~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~ 159 (457)
T PRK10580 80 QENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVAT 159 (457)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 677787654332211100 000
Q ss_pred ---------------e--c-Cch---h------h----h-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHH
Q 015596 157 ---------------V--T-GTQ---K------L----W-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKAT 204 (404)
Q Consensus 157 ---------------~--~-~~~---~------~----~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~ 204 (404)
. . ... . . + ++..++....|+|.+.......-.|+|+|+ |+.+|++
T Consensus 160 l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrAi 236 (457)
T PRK10580 160 IIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRAI 236 (457)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHHH
Confidence 0 0 000 0 1 1 456788889999999999999999999994 6799999
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 015596 205 LFSIIVTTTFYLLCGCMG 222 (404)
Q Consensus 205 ~~a~~~~~~~y~~~g~~g 222 (404)
..+.....++|+......
T Consensus 237 ~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 237 NSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 988888888888775443
No 34
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.97 E-value=1.1e-07 Score=96.06 Aligned_cols=159 Identities=16% Similarity=0.248 Sum_probs=112.9
Q ss_pred CccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChh-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWV-AGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~-~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l 134 (404)
+.+|+.+.++++...+..++|+|++..|.. ....|-. ..++.+++.+++.......+.|.....+...| .+.|.+
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG--~y~y~~- 81 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA--DYVYLK- 81 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--ceeeHH-
Confidence 357788999999999999999999999886 4455643 35667778888888888888888876665444 345544
Q ss_pred HHHHcCCCcceeeeeeee------------------e-------------------------eEe---------------
Q 015596 135 VKANLGGKKVIFCGLIQY------------------L-------------------------NLF--------------- 156 (404)
Q Consensus 135 ~~~~~G~~~~~l~~~~~~------------------~-------------------------~l~--------------- 156 (404)
+.+|+...++++...+ + +..
T Consensus 82 --~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~ 159 (445)
T PRK11357 82 --NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIA 159 (445)
T ss_pred --HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5667654322211100 0 000
Q ss_pred ---------------ecC-----c--------hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHH
Q 015596 157 ---------------VTG-----T--------QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSI 208 (404)
Q Consensus 157 ---------------~~~-----~--------~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~ 208 (404)
... . ....++..++....|+|.+......+-+|+|||+ |+.+|++..++
T Consensus 160 ~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~ 236 (445)
T PRK11357 160 KIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSC 236 (445)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHH
Confidence 000 0 0122456778888999999999999999999994 78999999999
Q ss_pred HHHHHHHHHHHhHHH
Q 015596 209 IVTTTFYLLCGCMGY 223 (404)
Q Consensus 209 ~~~~~~y~~~g~~gy 223 (404)
.+++++|++......
T Consensus 237 ~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 237 LLVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998776544
No 35
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.96 E-value=1.7e-07 Score=95.52 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=114.6
Q ss_pred cccccHHHHHHHHHhhhhhHhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596 59 KRTGNFWTTSSHIITAVIGSGVLSLAW-AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (404)
Q Consensus 59 ~r~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~ 137 (404)
+|+.+.++..+..+..+||+|++..|. +.++.|....++.+++.+++.......+.|.....+...| .|...+++
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG----~~~~~~~~ 76 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG----SFATYASR 76 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CHHHHHHH
Confidence 366788999999999999999998765 5778886545777888888888888888998876553333 46667778
Q ss_pred HcCCCcceeeeeeeee----------------------------------------eEe---------------------
Q 015596 138 NLGGKKVIFCGLIQYL----------------------------------------NLF--------------------- 156 (404)
Q Consensus 138 ~~G~~~~~l~~~~~~~----------------------------------------~l~--------------------- 156 (404)
.+|+...++++..+++ |+.
T Consensus 77 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l~ 156 (478)
T TIGR00913 77 FVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAII 156 (478)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 8888755433221110 000
Q ss_pred -----------e-c-Cc-----------h---------hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHH
Q 015596 157 -----------V-T-GT-----------Q---------KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA 203 (404)
Q Consensus 157 -----------~-~-~~-----------~---------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~ 203 (404)
. . .. . ...++..++....|+|.|......+-+|+|+|+ |+.+|+
T Consensus 157 ~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPra 233 (478)
T TIGR00913 157 GFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRA 233 (478)
T ss_pred HHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHH
Confidence 0 0 00 0 023466788888999999999999999999984 789999
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 015596 204 TLFSIIVTTTFYLLCGCM 221 (404)
Q Consensus 204 ~~~a~~~~~~~y~~~g~~ 221 (404)
+..++.++.++|++..+.
T Consensus 234 i~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 234 AKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999987654
No 36
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.95 E-value=6.8e-08 Score=99.07 Aligned_cols=163 Identities=17% Similarity=0.220 Sum_probs=112.7
Q ss_pred CCccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 015596 56 GRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVA-GPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD 133 (404)
Q Consensus 56 ~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~-g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~ 133 (404)
.+.+|+.+.++++...+++++|+|++..|.. ..+.|-.. .++.+++.+++.......+.|.....+...| .+.|.+
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG--~y~~~~ 115 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGG--EYNYIL 115 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc--hhhhHH
Confidence 4467888999999999999999999998876 56677542 3355677777777778888888776554333 234433
Q ss_pred HHHHHcCCCcceeeeee------------------eee-----------------------------eEe----------
Q 015596 134 AVKANLGGKKVIFCGLI------------------QYL-----------------------------NLF---------- 156 (404)
Q Consensus 134 l~~~~~G~~~~~l~~~~------------------~~~-----------------------------~l~---------- 156 (404)
+.+|+...++.... .++ |++
T Consensus 116 ---~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~ 192 (501)
T TIGR00911 116 ---EVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQD 192 (501)
T ss_pred ---hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45666533211100 000 000
Q ss_pred --------------------ecC--------c-------hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhH
Q 015596 157 --------------------VTG--------T-------QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMK 201 (404)
Q Consensus 157 --------------------~~~--------~-------~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~ 201 (404)
... . ....++..++....|+|.|...+..+..|+|+|+ |+.+
T Consensus 193 i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iP 269 (501)
T TIGR00911 193 IFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLP 269 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhH
Confidence 000 0 0122466788899999999999999999999994 7899
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhc
Q 015596 202 KATLFSIIVTTTFYLLCGCMGYAAF 226 (404)
Q Consensus 202 ~~~~~a~~~~~~~y~~~g~~gy~~f 226 (404)
|++..++.+++++|++..+......
T Consensus 270 rAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 270 IAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999876655444
No 37
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.90 E-value=3.2e-07 Score=95.07 Aligned_cols=276 Identities=13% Similarity=0.093 Sum_probs=156.0
Q ss_pred CccccccHHHHHHHHHhhhhhHhhhHHHHHH--HHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWAI--AQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af--~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l 134 (404)
+.+|+.+.++.++.-+.+++|+|++.+|... ...|-. .++.+++.++.+......+.|.....+...| .+.|..
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg--~Y~y~~- 100 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGS--AYLYSY- 100 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc--ceeeHH-
Confidence 4678899999999999999999999998653 346754 5667778888888888888888776654333 244433
Q ss_pred HHHHcCCCcceeeeee--------------------------------------------ee--------------eeEe
Q 015596 135 VKANLGGKKVIFCGLI--------------------------------------------QY--------------LNLF 156 (404)
Q Consensus 135 ~~~~~G~~~~~l~~~~--------------------------------------------~~--------------~~l~ 156 (404)
..+|+...++++.. .. ++++
T Consensus 101 --~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~ 178 (557)
T TIGR00906 101 --VTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSF 178 (557)
T ss_pred --HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHh
Confidence 23344322111000 00 0000
Q ss_pred ------------------------------ec--Cc---------h----hhhHHHHHHHHHHHhhhhhhhHHHHHHHhc
Q 015596 157 ------------------------------VT--GT---------Q----KLWRSLQALGAIAFAYSFSIILLEIQDTIR 191 (404)
Q Consensus 157 ------------------------------~~--~~---------~----~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 191 (404)
.+ +. + ...+++.++....|+|.|...+...-.|+|
T Consensus 179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k 258 (557)
T TIGR00906 179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVK 258 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence 00 00 0 012467888899999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCC---CchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhccccc
Q 015596 192 SPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL---APNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQP 268 (404)
Q Consensus 192 ~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~---~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 268 (404)
+|+ |+.++++..++.+++++|+++.+.-...-..+ ..+.+...+......+...+..++.++.+..+....+..
T Consensus 259 nP~---r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~ 335 (557)
T TIGR00906 259 NPQ---RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFP 335 (557)
T ss_pred Ccc---ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 994 78999999999999999998876644333221 111111111111223444455555555555444333333
Q ss_pred HHHHHHHHhhc-cCCCCccccccc-cCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHH
Q 015596 269 LFAFVEKWSAK-KWPKSDLVTAEY-EIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVY 346 (404)
Q Consensus 269 ~~~~~e~~~~~-~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi 346 (404)
.-+.+...-.+ ..|+ +..+-+ +.+.| ...+.. ..+++.+++.. .+++.+.++... +..+.|.
T Consensus 336 ~sRil~amarDGlLP~--~fakv~~r~~tP--------~~Ail~---~~iv~~il~~~-~~~~~l~~l~si--g~ll~y~ 399 (557)
T TIGR00906 336 LPRVIYAMARDGLLFK--WLAQINSKTKTP--------INATVV---SGAIAALMAFL-FDLKALVDLLSI--GTLLAYS 399 (557)
T ss_pred HHHHHHHHHcCCCccH--HHhccCCCCCCc--------HHHHHH---HHHHHHHHHHH-cCHHHHHHHHHH--HHHHHHH
Confidence 33333332211 1121 111111 11233 111111 12223333333 356777776543 3578888
Q ss_pred hhHHhHHhhcc
Q 015596 347 FPIEMYKAQKK 357 (404)
Q Consensus 347 ~P~l~yl~~~~ 357 (404)
+++...+..|+
T Consensus 400 lv~~~~l~lR~ 410 (557)
T TIGR00906 400 LVAACVLILRY 410 (557)
T ss_pred HHHHHHHHhhc
Confidence 88777766653
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.87 E-value=4.5e-07 Score=91.50 Aligned_cols=157 Identities=14% Similarity=0.125 Sum_probs=108.0
Q ss_pred CccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~ 136 (404)
+.+|+.+.++.....+..++|....+.+.+.++.|+..-++..++.+++.......+.|.....+...| .+. -++
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg--~y~---~~~ 78 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGG--GYG---FAR 78 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HHH---HHH
Confidence 356778899999999999998555566888999999765666666776666667778888766554333 123 446
Q ss_pred HHcCCCcceeeeeeee-----------------e-----------------------eEe--------------------
Q 015596 137 ANLGGKKVIFCGLIQY-----------------L-----------------------NLF-------------------- 156 (404)
Q Consensus 137 ~~~G~~~~~l~~~~~~-----------------~-----------------------~l~-------------------- 156 (404)
+.+|+...++++...+ + |++
T Consensus 79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~~l 158 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIAL 158 (442)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7888865443221110 0 000
Q ss_pred --------ec-Cch----------------hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHH
Q 015596 157 --------VT-GTQ----------------KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVT 211 (404)
Q Consensus 157 --------~~-~~~----------------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~ 211 (404)
.. +.. ...+++.++....|+|.+......+-+|+|||+ |+.+|++..++.++
T Consensus 159 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~~~~ 235 (442)
T TIGR00908 159 GVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAILTL 235 (442)
T ss_pred HHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHHHHH
Confidence 00 000 012456777788999999999999999999994 78999999999998
Q ss_pred HHHHHHHHhH
Q 015596 212 TTFYLLCGCM 221 (404)
Q Consensus 212 ~~~y~~~g~~ 221 (404)
.++|+.....
T Consensus 236 ~~~~~~~~~~ 245 (442)
T TIGR00908 236 LALAAGILVV 245 (442)
T ss_pred HHHHHHHHHH
Confidence 8888876443
No 39
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.84 E-value=5.3e-07 Score=91.14 Aligned_cols=262 Identities=18% Similarity=0.166 Sum_probs=155.6
Q ss_pred HhhhhhHhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCCcceeeeee
Q 015596 72 ITAVIGSGVLSLAW-AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLI 150 (404)
Q Consensus 72 ~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~l~~~~ 150 (404)
++++||+|++-.|. +.++.|. ..++.+++.+++.......+.|.....+. .| ..-+-+++.+|+...++++..
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~-~G----g~y~y~~~~~G~~~gf~~gw~ 77 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPD-TG----SFSTYADKAIGRWAGYTIGWL 77 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHHHHHcChHHHHHHHHH
Confidence 57899999999887 6888896 58888999999999999999998876553 33 333445588887654332211
Q ss_pred eee----------------------------------------eEe------------------------------ec--
Q 015596 151 QYL----------------------------------------NLF------------------------------VT-- 158 (404)
Q Consensus 151 ~~~----------------------------------------~l~------------------------------~~-- 158 (404)
.++ |++ ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~g~ 157 (446)
T PRK10197 78 YWWFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGF 157 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 100 000 00
Q ss_pred -C--c--------------hhhh-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 015596 159 -G--T--------------QKLW-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 220 (404)
Q Consensus 159 -~--~--------------~~~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~ 220 (404)
. . +..| ++..++....|+|.|...+...-.|+|||+ |+.+|++..++..+.++|++..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai~~~~~~i~i~Yil~~~ 234 (446)
T PRK10197 158 YPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRATNSVIWRISIFYLCSIF 234 (446)
T ss_pred CCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0011 577889999999999999999999999984 78999999999999999998666
Q ss_pred HHHhhcCCCCc-----h---hhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc-cCCCCccccccc
Q 015596 221 MGYAAFGDLAP-----N---NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-KWPKSDLVTAEY 291 (404)
Q Consensus 221 ~gy~~fG~~~~-----~---~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~-~~~~~~~~~~~~ 291 (404)
..-.....+.. + ......+ ..+...+.++..+++.+.+.--.+....+.+...-.+ ..|+ +..+..
T Consensus 235 ~~~~~~p~~~~~~~~~~~~~~~~~~~g---~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~--~~~~~~ 309 (446)
T PRK10197 235 VVVALIPWNMPGLKAVGSYRSVLELLN---IPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA--VMGKIN 309 (446)
T ss_pred HHheecCcCcccccccCcHHHHHHHcC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH--HHHhhC
Confidence 64333222211 1 1122221 2334455566666665555544444444444333321 1221 122211
Q ss_pred cCCCCCccccccchhhHHHHHHHHHHHHHHHhhcC--ChHHHHHHHhhhhhhhHHHHhhHHhHHhhcc
Q 015596 292 EIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP--FFNDVVGILGAMGFWPLTVYFPIEMYKAQKK 357 (404)
Q Consensus 292 ~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp--~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~ 357 (404)
+.+.| ...+.....+.++..+.....| .++.++++.+... .+.++++++.+++.+|
T Consensus 310 ~~~~P--------~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 310 RSKTP--------YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred cCCCc--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 22344 3333333333333333322223 4677777776554 4888888888887654
No 40
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.80 E-value=1.9e-07 Score=91.60 Aligned_cols=160 Identities=19% Similarity=0.229 Sum_probs=117.0
Q ss_pred cccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcC
Q 015596 61 TGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLG 140 (404)
Q Consensus 61 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G 140 (404)
+.|.+|..+.++.+++|+|++.+|...++.+--.+.+..++.+++......++.+..+..+. .+..|..++.+|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~------~~~~~~~~~~~G 75 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE------KNFSEILSKYLG 75 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHhh
Confidence 46789999999999999999999998766544446666777777777777888887765331 268888999999
Q ss_pred CCcceeeeeeeeeeEe----------------------------------------------------------------
Q 015596 141 GKKVIFCGLIQYLNLF---------------------------------------------------------------- 156 (404)
Q Consensus 141 ~~~~~l~~~~~~~~l~---------------------------------------------------------------- 156 (404)
|+...+.+....+++.
T Consensus 76 k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~i 155 (359)
T TIGR00912 76 KILGRLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILV 155 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9866554332111100
Q ss_pred ----ecCc-----------hhhhHHHHHH-HHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 015596 157 ----VTGT-----------QKLWRSLQAL-GAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 220 (404)
Q Consensus 157 ----~~~~-----------~~~~~~~~~~-~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~ 220 (404)
..+. ....+...+. ....++|.+...+..+..++|+| |+.+|+...+..+++++|++.-+
T Consensus 156 l~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~ 231 (359)
T TIGR00912 156 LILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTF 231 (359)
T ss_pred HHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0011233333 36788999888888888999987 88999999999999999999999
Q ss_pred HHHhhcCCCC
Q 015596 221 MGYAAFGDLA 230 (404)
Q Consensus 221 ~gy~~fG~~~ 230 (404)
.....+|.+.
T Consensus 232 ~~i~~lg~~~ 241 (359)
T TIGR00912 232 VSISVFGGNV 241 (359)
T ss_pred HHHheecHHH
Confidence 9999998763
No 41
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.71 E-value=9.5e-07 Score=88.60 Aligned_cols=273 Identities=18% Similarity=0.217 Sum_probs=156.1
Q ss_pred cHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCC
Q 015596 63 NFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVN-LYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGG 141 (404)
Q Consensus 63 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~-~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~ 141 (404)
++++++...+++++|+|++..| ..++.|.. .++..++.+++. ......+.|..+..++..| .-.-+++.+|+
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG-----~y~~~~~~~g~ 74 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGG-----IYVWVSRAFGP 74 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTT-----HHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCe-----eeehhhhcccc
Confidence 6889999999999999999999 77777775 666666666655 5666777787665443333 22344566777
Q ss_pred Ccceeeeeeeee-----------------------e-----------------------Ee-------------------
Q 015596 142 KKVIFCGLIQYL-----------------------N-----------------------LF------------------- 156 (404)
Q Consensus 142 ~~~~l~~~~~~~-----------------------~-----------------------l~------------------- 156 (404)
+..++.....++ . +.
T Consensus 75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~ 154 (426)
T PF13520_consen 75 FWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVI 154 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhh
Confidence 654332211100 0 00
Q ss_pred ------------ecCc-------------hhhh-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHH
Q 015596 157 ------------VTGT-------------QKLW-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIV 210 (404)
Q Consensus 157 ------------~~~~-------------~~~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~ 210 (404)
.+.+ .+.| .++.++....|+|.+......+.+|+|+ |+.+|++.+++.+
T Consensus 155 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~ 229 (426)
T PF13520_consen 155 PLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIII 229 (426)
T ss_dssp HHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHH
T ss_pred hhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-----hhheeecccchhH
Confidence 0000 0011 3678899999999999999999999775 6899999999999
Q ss_pred HHHHHHHHHhHHHhhcCCCCc---hhhh---ccc-CCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc-cCC
Q 015596 211 TTTFYLLCGCMGYAAFGDLAP---NNLL---TGF-GFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-KWP 282 (404)
Q Consensus 211 ~~~~y~~~g~~gy~~fG~~~~---~~il---~~~-~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~-~~~ 282 (404)
+.++|++.........+++.. ++.. ..+ ......+...+..++..+....+.........+.+...-++ ..|
T Consensus 230 ~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP 309 (426)
T PF13520_consen 230 VAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLP 309 (426)
T ss_dssp HHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchh
Confidence 999999998887777666421 1211 000 00011234455556666666666655555555555554432 224
Q ss_pred CCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcC--ChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCC
Q 015596 283 KSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP--FFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIG 359 (404)
Q Consensus 283 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp--~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~ 359 (404)
+ . ..+.++.+.| ..-+.+...+..+..++....| +++.+.+... ....+.++++.+.+++.++++
T Consensus 310 ~-~-~~~~~k~~~P--------~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 376 (426)
T PF13520_consen 310 K-W-FAKVNKFGTP--------YNAIILVAVISSILLLLFLFIPQSSFDILVSLSS--VGYLISYILVILAVLFLRRKR 376 (426)
T ss_dssp G-G-GGTTSSSSSC--------HHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHH--HHTHHHHHHHHHHHHHTHHHS
T ss_pred h-h-hhhccccCCc--------eeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc
Confidence 1 1 2222223333 2222222222111111112233 4555665443 345667777777776665443
No 42
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.59 E-value=1.5e-05 Score=80.67 Aligned_cols=162 Identities=18% Similarity=0.275 Sum_probs=110.0
Q ss_pred ccccccHHH-HHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596 58 LKRTGNFWT-TSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (404)
Q Consensus 58 ~~r~~s~~~-a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~ 136 (404)
.+++.+.++ .....+..++|.|++.+|......+ ....+.+++.+++.......+.|.....+...| .+.|. +
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG--~y~~~---~ 83 (466)
T COG0531 10 LKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAGG--AYAYA---K 83 (466)
T ss_pred cCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--eeeeh---h
Confidence 344555666 8888899999999999999887776 333333566666666666777777765443333 23444 4
Q ss_pred HHcCCCcceeeeeeee---------------------eeE--------e-------------------------------
Q 015596 137 ANLGGKKVIFCGLIQY---------------------LNL--------F------------------------------- 156 (404)
Q Consensus 137 ~~~G~~~~~l~~~~~~---------------------~~l--------~------------------------------- 156 (404)
+.+|++..++++...+ ... .
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~ 163 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINSII 163 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777654332211000 000 0
Q ss_pred ------------------ecC-----c-------hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHH
Q 015596 157 ------------------VTG-----T-------QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLF 206 (404)
Q Consensus 157 ------------------~~~-----~-------~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~ 206 (404)
.+. . .....+..++....++|.|-......-+|+|||. |+.+|++..
T Consensus 164 ~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii~ 240 (466)
T COG0531 164 TILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAIIL 240 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHHH
Confidence 000 0 0111367888889999999999999999999983 679999999
Q ss_pred HHHHHHHHHHHHHhHHHhhcCC
Q 015596 207 SIIVTTTFYLLCGCMGYAAFGD 228 (404)
Q Consensus 207 a~~~~~~~y~~~g~~gy~~fG~ 228 (404)
++.+++++|++.........++
T Consensus 241 ~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 241 SLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHHhCccH
Confidence 9999999999998888887775
No 43
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.40 E-value=6.8e-05 Score=76.59 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 015596 166 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 227 (404)
Q Consensus 166 ~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG 227 (404)
...++....|+|.+......+-+|+|+|+ |+.+|++..++.+..+++++..+.-+...+
T Consensus 219 ~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 219 FLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44455567799999999999999999994 789999999988777655544444444444
No 44
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.40 E-value=5.6e-05 Score=77.49 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 015596 166 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 223 (404)
Q Consensus 166 ~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy 223 (404)
...++....|+|.+.......-.|+|+|+ |+.+|++..++..+.++|++..++..
T Consensus 213 ~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 213 VLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778899999999999999999994 78999999999999999998654443
No 45
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.34 E-value=2.1e-05 Score=77.17 Aligned_cols=279 Identities=16% Similarity=0.172 Sum_probs=168.2
Q ss_pred CccccccHHHHHHHHHhhhhhHhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAVIGSGVL-SLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~iG~GiL-~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~ 135 (404)
+.+|..+.+.--+.-+...||+|.+ +-..+.+.+|-- -++..++.|++.+.=++.|.|...+.+ .. .++.+.+
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p-~~----gSF~~~a 83 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANP-VS----GSFSDYA 83 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCC-CC----CcHHHHH
Confidence 3456677888888899999999986 567788888864 466778888999999999999876533 32 3899999
Q ss_pred HHHcCCCcceeeeeeeeeeE----------------------------------------e-------------------
Q 015596 136 KANLGGKKVIFCGLIQYLNL----------------------------------------F------------------- 156 (404)
Q Consensus 136 ~~~~G~~~~~l~~~~~~~~l----------------------------------------~------------------- 156 (404)
++.+|++..++.+...+.+. .
T Consensus 84 ~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~a 163 (462)
T COG1113 84 RKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAA 163 (462)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997655433221110 0
Q ss_pred ----------------e-c----Cchh-----------hhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHH
Q 015596 157 ----------------V-T----GTQK-----------LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKAT 204 (404)
Q Consensus 157 ----------------~-~----~~~~-----------~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~ 204 (404)
. + ..++ ..+++.++-+.+|||++...+----.|.|||. |..+|+.
T Consensus 164 Ii~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAi 240 (462)
T COG1113 164 IIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAI 240 (462)
T ss_pred HHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHH
Confidence 0 0 0111 23578999999999999999999999999994 5677775
Q ss_pred HHHHHHHHHHHH-----HHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc
Q 015596 205 LFSIIVTTTFYL-----LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK 279 (404)
Q Consensus 205 ~~a~~~~~~~y~-----~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~ 279 (404)
..-..=..++|+ +..+.-+-.++++.++ +..-|...+-.+...+.|.....+...++-=-.+..-+.+.++..+
T Consensus 241 n~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SP-FV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~ 319 (462)
T COG1113 241 NSVIWRILIFYVGSLFVILSLYPWNQIGEDGSP-FVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQ 319 (462)
T ss_pred hhhhHHHHHHHHHHHHHHheeccccccCCCCCc-HHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhc
Confidence 554444444444 5555555555554433 2222211111222334444333333333322222333344443321
Q ss_pred -cCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCC--hHHHHHHHhhhhhhhHHHHhhHHhHHhhc
Q 015596 280 -KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF--FNDVVGILGAMGFWPLTVYFPIEMYKAQK 356 (404)
Q Consensus 280 -~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~--~~~i~~liGa~~~~~l~fi~P~l~yl~~~ 356 (404)
.-|+. .++-.+..+| ...++..+....+..++....|. |+.+.+..+.. .+....+=.+.|+|.+
T Consensus 320 g~APk~--~~klsk~gVP--------~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~--~l~vW~~I~~s~l~~r 387 (462)
T COG1113 320 GDAPKA--FAKLSKRGVP--------VNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLG--LLFVWLMILLSQLKLR 387 (462)
T ss_pred CcccHh--HhhccccCCC--------HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 11221 1111111344 56677777777788888888883 55555555543 3445555567788876
Q ss_pred c
Q 015596 357 K 357 (404)
Q Consensus 357 ~ 357 (404)
|
T Consensus 388 k 388 (462)
T COG1113 388 K 388 (462)
T ss_pred h
Confidence 6
No 46
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.32 E-value=0.00013 Score=74.45 Aligned_cols=54 Identities=15% Similarity=0.066 Sum_probs=45.4
Q ss_pred HHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Q 015596 172 AIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 228 (404)
Q Consensus 172 ~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~ 228 (404)
.+.|+|.|...+...-+|+|||+ |+.+|++..++.++.++|++..+......++
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~ 255 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLAIAFIIPR 255 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 45689999999999999999994 7899999999999999999877665554443
No 47
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.20 E-value=0.00035 Score=71.80 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhH
Q 015596 168 QALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 221 (404)
Q Consensus 168 ~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~ 221 (404)
..+..+.|+|.|.......-+|+|+|+ |+++|++..++.++.++|.+..+.
T Consensus 198 ~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~~~ 248 (507)
T TIGR00910 198 VVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGGFS 248 (507)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 344456889999999999999999994 789999999999999999865543
No 48
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.18 E-value=0.0016 Score=66.49 Aligned_cols=163 Identities=13% Similarity=-0.036 Sum_probs=105.7
Q ss_pred CccccccHHHHHHHHHhhh-hhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAV-IGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~-iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l 134 (404)
+.+|+-+.++.+..-++.+ +|+|+.+++.. ..+.|- ..+..+++.++........+.|.....+...| .+.|
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG--~Y~~--- 83 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGA--IYQW--- 83 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--HHHH---
Confidence 3567788888887777764 89999987665 667776 46777777788888888888888776554333 2333
Q ss_pred HHHHcCCCcceeeeee--------------------------------------------------------eeeeEe--
Q 015596 135 VKANLGGKKVIFCGLI--------------------------------------------------------QYLNLF-- 156 (404)
Q Consensus 135 ~~~~~G~~~~~l~~~~--------------------------------------------------------~~~~l~-- 156 (404)
+++.+|+...++++.. ..+|++
T Consensus 84 ~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~ 163 (475)
T TIGR03428 84 SRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGV 163 (475)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhh
Confidence 3355566533221100 000000
Q ss_pred ----------------------------ecC--------c----hh--hhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCC
Q 015596 157 ----------------------------VTG--------T----QK--LWRSLQALGAIAFAYSFSIILLEIQDTIRSPP 194 (404)
Q Consensus 157 ----------------------------~~~--------~----~~--~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 194 (404)
.++ . .. .+.+..+.....|+|.|......+-+|+|||+
T Consensus 164 k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~ 243 (475)
T TIGR03428 164 EWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPR 243 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcc
Confidence 000 0 00 11244566667899999999999999999994
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Q 015596 195 AEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 228 (404)
Q Consensus 195 ~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~ 228 (404)
|+.+|++..++.+.+++|.++-+......++
T Consensus 244 ---r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~ 274 (475)
T TIGR03428 244 ---RVAPRTILTALSVSALGGGLMILGALMAAPS 274 (475)
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 7899999999998887776666555554443
No 49
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.11 E-value=5.6e-05 Score=75.77 Aligned_cols=280 Identities=19% Similarity=0.135 Sum_probs=169.9
Q ss_pred CccccccHHHHHHHHHhhhhhHhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596 57 RLKRTGNFWTTSSHIITAVIGSGVL-SLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (404)
Q Consensus 57 ~~~r~~s~~~a~~~l~~~~iG~GiL-~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~ 135 (404)
+.+|+...+.-.+.-+...||+|++ +.-.+.++.|-...++..++++.+.++.+.-|.|.+...+ ..| +|...+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sG----sF~~ya 115 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSG----SFSTYA 115 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC----chhhhh
Confidence 4678888888899999999999997 7899999999999999999999999999999999887766 444 455555
Q ss_pred HHHcCCCcce----------eee----------eee---------------------eeeEe------------------
Q 015596 136 KANLGGKKVI----------FCG----------LIQ---------------------YLNLF------------------ 156 (404)
Q Consensus 136 ~~~~G~~~~~----------l~~----------~~~---------------------~~~l~------------------ 156 (404)
.+..++.... ++. +++ .+|++
T Consensus 116 ~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~ 195 (541)
T COG0833 116 TRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVL 195 (541)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHH
Confidence 5554443211 110 000 01111
Q ss_pred -----------------ec---------Cc-----hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHH
Q 015596 157 -----------------VT---------GT-----QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATL 205 (404)
Q Consensus 157 -----------------~~---------~~-----~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~ 205 (404)
.+ .+ ..+-++...+-+..|||++...+----.|-++|. |..+|++.
T Consensus 196 ~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik 272 (541)
T COG0833 196 TIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIK 272 (541)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHH
Confidence 00 00 1122467788888999999988888889999984 78888888
Q ss_pred HHHHHHHHHHHHHHh-HHHh-hcCCC----------CchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHH
Q 015596 206 FSIIVTTTFYLLCGC-MGYA-AFGDL----------APNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFV 273 (404)
Q Consensus 206 ~a~~~~~~~y~~~g~-~gy~-~fG~~----------~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~ 273 (404)
-.+-=..++|++.-+ .|.+ -|.|. ..+.+...+....-..+..+.|+.+.++++.+-==-++..-+.+
T Consensus 273 ~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L 352 (541)
T COG0833 273 QVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRML 352 (541)
T ss_pred HHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHH
Confidence 887777788874332 2222 22220 11222222211111234567777777777655433344444555
Q ss_pred HHHhhcc-CCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcC--ChHHHHHHHhhhhhhhHHHHhhHH
Q 015596 274 EKWSAKK-WPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP--FFNDVVGILGAMGFWPLTVYFPIE 350 (404)
Q Consensus 274 e~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp--~~~~i~~liGa~~~~~l~fi~P~l 350 (404)
..+-.++ -|+ +.++--..-.| ...+....++-+++++.+..-. .++-++++.|-. ..++.+.=++
T Consensus 353 ~sLA~~g~APk--~f~~~~r~GvP--------~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s--~~i~W~~I~~ 420 (541)
T COG0833 353 YSLAKQGKAPK--IFAKVDRRGVP--------LVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS--GFIAWGSICL 420 (541)
T ss_pred HHHHhcCCCch--HHHhhCCCCCc--------hHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH--HHHHHHHHHH
Confidence 5544222 122 11111011122 4445555555555555555522 367778887754 4666677778
Q ss_pred hHHhhc
Q 015596 351 MYKAQK 356 (404)
Q Consensus 351 ~yl~~~ 356 (404)
.|++-|
T Consensus 421 shirFR 426 (541)
T COG0833 421 SHIRFR 426 (541)
T ss_pred HHHHHH
Confidence 887754
No 50
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.08 E-value=3e-05 Score=74.82 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=109.9
Q ss_pred cccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcC
Q 015596 61 TGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLG 140 (404)
Q Consensus 61 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G 140 (404)
|.|..|....++.+++|+|++.+|...++.+ -.|.+..++.++.......++.+..+..+ +.+..|..++.+|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p------~~~l~~~~~~~~G 73 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRFP------GKTLVEISEKLFG 73 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHhC
Confidence 3578899999999999999999999865553 12222333333333333344444443211 2489999999999
Q ss_pred CCcceeeeeeeeeeEe----------------------------------------------------------------
Q 015596 141 GKKVIFCGLIQYLNLF---------------------------------------------------------------- 156 (404)
Q Consensus 141 ~~~~~l~~~~~~~~l~---------------------------------------------------------------- 156 (404)
|+...+......+..+
T Consensus 74 k~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i 153 (320)
T PF03845_consen 74 KWLGKIINLLYILYFLLISALVLREFSEFIKTYLLPETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLI 153 (320)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9866544332211110
Q ss_pred ----ec----------CchhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 015596 157 ----VT----------GTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG 222 (404)
Q Consensus 157 ----~~----------~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g 222 (404)
.. -+....+.+.+.....+.|.+...+.-+...++++ ++.+|....+..+++++|+..-+..
T Consensus 154 ~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~ 229 (320)
T PF03845_consen 154 LLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFIT 229 (320)
T ss_pred HHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01123357777788888899888899999999988 8889999999999999999999999
Q ss_pred HhhcCCC
Q 015596 223 YAAFGDL 229 (404)
Q Consensus 223 y~~fG~~ 229 (404)
...||.+
T Consensus 230 i~vfG~~ 236 (320)
T PF03845_consen 230 IGVFGPE 236 (320)
T ss_pred HHhcCHH
Confidence 9999975
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.52 E-value=0.00012 Score=74.79 Aligned_cols=151 Identities=24% Similarity=0.285 Sum_probs=107.8
Q ss_pred HhhhhhHhhhH-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCCcceeeeee
Q 015596 72 ITAVIGSGVLS-LAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLI 150 (404)
Q Consensus 72 ~~~~iG~GiL~-lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~l~~~~ 150 (404)
+.+++|+|++. .+.+..+.|....++..++.+++......-+.+..+..+ +.| .+-..+++.+|+.....++..
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~G----g~y~y~~~~lg~~~Gf~~gw~ 81 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAG----GFYAYASRGLGPALGFAAGWA 81 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-ccc----chhhhhhhccCCcCCceeeHH
Confidence 56789999885 677899999987888888888888888888888887655 333 233344466666533221110
Q ss_pred --------------------e-----------ee----------------eEe--------------------------e
Q 015596 151 --------------------Q-----------YL----------------NLF--------------------------V 157 (404)
Q Consensus 151 --------------------~-----------~~----------------~l~--------------------------~ 157 (404)
+ .. +++ .
T Consensus 82 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~ 161 (478)
T PF00324_consen 82 YWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVG 161 (478)
T ss_pred HHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhc
Confidence 0 00 000 0
Q ss_pred ----------cCc--------------h--------hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHH
Q 015596 158 ----------TGT--------------Q--------KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATL 205 (404)
Q Consensus 158 ----------~~~--------------~--------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~ 205 (404)
.+. . ..-+++.++....++|.+-......-.|.|+|+ |+.+|+..
T Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~---k~IPra~~ 238 (478)
T PF00324_consen 162 VIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR---KTIPRATL 238 (478)
T ss_pred ccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch---hhhhhHhh
Confidence 001 0 023478899999999999999999999999994 79999999
Q ss_pred HHHHHHHHHHHHHHhHHHhhcCCCC
Q 015596 206 FSIIVTTTFYLLCGCMGYAAFGDLA 230 (404)
Q Consensus 206 ~a~~~~~~~y~~~g~~gy~~fG~~~ 230 (404)
.++...+++|++.....-...|.+.
T Consensus 239 ~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 239 LSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhhhhhhhhhhhhhhhcccccCccc
Confidence 9999999999988887777666553
No 52
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00053 Score=70.55 Aligned_cols=280 Identities=17% Similarity=0.121 Sum_probs=164.9
Q ss_pred CCccccccHHHHHHHHHhhhhhHhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 015596 56 GRLKRTGNFWTTSSHIITAVIGSGVL-SLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (404)
Q Consensus 56 ~~~~r~~s~~~a~~~l~~~~iG~GiL-~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l 134 (404)
.+.+|+.+.+.-.+.-+.++||+|++ ....+.++.|-..-++..++.+...+.+...+.|..-..+...|. .++|..
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs-~~~ya~- 103 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGS-FYTYAY- 103 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheeccccccc-ceeeee-
Confidence 45678888888888889999999998 567789999988888888899999999999999988655532121 122211
Q ss_pred HHHHcCCC----------------------------------------------cceeeee---eeeeeEe---------
Q 015596 135 VKANLGGK----------------------------------------------KVIFCGL---IQYLNLF--------- 156 (404)
Q Consensus 135 ~~~~~G~~----------------------------------------------~~~l~~~---~~~~~l~--------- 156 (404)
...|+. +.++... ...++++
T Consensus 104 --~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~e 181 (554)
T KOG1286|consen 104 --RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVE 181 (554)
T ss_pred --eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhcccee
Confidence 111111 1111000 0000000
Q ss_pred ---------------------------ecC----chh------------hhHHHHHHHHHHHhhhhhhhHHHHHHHhcCC
Q 015596 157 ---------------------------VTG----TQK------------LWRSLQALGAIAFAYSFSIILLEIQDTIRSP 193 (404)
Q Consensus 157 ---------------------------~~~----~~~------------~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 193 (404)
.+. ..+ +-++...+.+..|+|.+-..+-..-.|-|+|
T Consensus 182 f~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP 261 (554)
T KOG1286|consen 182 FSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNP 261 (554)
T ss_pred ehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCC
Confidence 010 001 1146788999999999999999999999999
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhc-CCC--CchhhhcccCC------CCChHHHHHHHHHHHHHHHhhhhc
Q 015596 194 PAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAF-GDL--APNNLLTGFGF------YNPYWLIDIANAAIVVHLVGAYQV 264 (404)
Q Consensus 194 ~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~f-G~~--~~~~il~~~~~------~~~~~~~~~~~~~~~i~~~~s~pl 264 (404)
+ |..++++..++..++++|++..+.-=+.- .++ ..++....-|+ ..-..+..+.|+..++.++.+---
T Consensus 262 ~---k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~ 338 (554)
T KOG1286|consen 262 R---KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNS 338 (554)
T ss_pred c---ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHH
Confidence 5 88999999999999999998776543321 111 11111111011 011122237777777777777666
Q ss_pred ccccHHHHHHHHhhccC-CCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcC-----ChHHHHHHHhhh
Q 015596 265 FCQPLFAFVEKWSAKKW-PKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP-----FFNDVVGILGAM 338 (404)
Q Consensus 265 ~~~p~~~~~e~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp-----~~~~i~~liGa~ 338 (404)
.+++.-+.+..+...+. |+ +.++-.+...| +...+.. .+...++++... .++.++++.|-
T Consensus 339 ~~y~~sR~l~amA~~G~~Pk--~f~~v~~~g~P--------~~a~~v~---~~~~~l~~~~~~~~~~~~f~~L~~~~si- 404 (554)
T KOG1286|consen 339 SLYAGSRVLYALAKDGLAPK--FFARVDRRGVP--------LVAVLVS---GLFGALAALNFSLGAATVFNWLVNLSSI- 404 (554)
T ss_pred HhHHhHHHHHHHHhcCCcch--HHhhcCCCCCc--------hhHHHHH---HHHHHHHHHHhccccchHHHHHHHHHhH-
Confidence 66666666666543211 22 11110001222 2222222 223333333333 36888888875
Q ss_pred hhhhHHHHhhHHhHHhhcc
Q 015596 339 GFWPLTVYFPIEMYKAQKK 357 (404)
Q Consensus 339 ~~~~l~fi~P~l~yl~~~~ 357 (404)
+..+++.+=++.|++.|+
T Consensus 405 -~tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 405 -GTLFAWTLVALSHLRFRY 422 (554)
T ss_pred -HHHHHHHHHHHHHeeeee
Confidence 456777777777777553
No 53
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.04 E-value=0.024 Score=57.25 Aligned_cols=65 Identities=11% Similarity=-0.019 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC
Q 015596 163 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA 230 (404)
Q Consensus 163 ~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 230 (404)
.|.+..++-.-++.+.|-.....+-+|.++++ ++-++++..+..+..++=..+-+.-...-+++.
T Consensus 251 G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 251 GWAFILGFFNPAWTMSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred hHHHHHhhccceeEEeccCchHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 34566677777788888899999999999984 778888888888887777766666666777543
No 54
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=96.97 E-value=0.0013 Score=57.64 Aligned_cols=53 Identities=23% Similarity=0.463 Sum_probs=47.7
Q ss_pred HHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015596 66 TTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYR 118 (404)
Q Consensus 66 ~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~ 118 (404)
-...-+.|-++|+|-|+||.||+..||+.++.++.+.+++++.+....+++..
T Consensus 16 vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfvieala 68 (319)
T KOG3832|consen 16 VGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALA 68 (319)
T ss_pred hhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999999999999999999999999999998888764
No 55
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=95.98 E-value=0.8 Score=45.43 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=35.1
Q ss_pred hhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCC
Q 015596 179 FSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL 229 (404)
Q Consensus 179 ~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~ 229 (404)
.....++..+-.|++ |+......++..+...+..++|.....+.|+.
T Consensus 188 wa~~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 188 WLPLIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred HHHHccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 334467777777766 66777778888888888889998888777764
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=95.90 E-value=0.87 Score=46.02 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=40.1
Q ss_pred hHHHHHHHHHH-HhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhh----cCCCC
Q 015596 164 WRSLQALGAIA-FAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA----FGDLA 230 (404)
Q Consensus 164 ~~~~~~~~~~~-faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~----fG~~~ 230 (404)
+.+..++...+ +.-....+.++..+.+|++ ++-.+...+++....+...++|+.+-.. +|+..
T Consensus 207 ~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 207 WAFLYALSLVIGSFATWATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred HHHHHHHHHHHHHHHHHHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 33444444322 2224556778888888887 4444557777777777777787777766 88763
No 57
>PRK11375 allantoin permease; Provisional
Probab=95.84 E-value=2.6 Score=43.18 Aligned_cols=91 Identities=7% Similarity=0.064 Sum_probs=45.0
Q ss_pred hhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHH----HhhcCCCCc--hhhhcccCCCCChHHHHHHHHH
Q 015596 180 SIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG----YAAFGDLAP--NNLLTGFGFYNPYWLIDIANAA 253 (404)
Q Consensus 180 ~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g----y~~fG~~~~--~~il~~~~~~~~~~~~~~~~~~ 253 (404)
..+.+..-+-.|++ |+-.+...+++.+..++..++|++. ...+|+... .+++..+ +......++-+.
T Consensus 244 ~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~---~~~~~~~~a~l~ 316 (484)
T PRK11375 244 AVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRW---DSLFASFFAVLV 316 (484)
T ss_pred HccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHh---cchHHHHHHHHH
Confidence 34667777777766 5455555566666666555455443 456666532 2333322 112222233344
Q ss_pred HHHHHHhh-hhcccccHHHHHHHHh
Q 015596 254 IVVHLVGA-YQVFCQPLFAFVEKWS 277 (404)
Q Consensus 254 ~~i~~~~s-~pl~~~p~~~~~e~~~ 277 (404)
.+++.... ......+.-..+..++
T Consensus 317 ~v~a~~~tN~~~N~ys~~~~l~~l~ 341 (484)
T PRK11375 317 ILMTTISTNATGNIIPAGYQIAALA 341 (484)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHhC
Confidence 44444444 2345555555555544
No 58
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=95.46 E-value=0.69 Score=44.08 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhhhhHhhhHH---HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcC
Q 015596 64 FWTTSSHIITAVIGSGVLSL---AWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLG 140 (404)
Q Consensus 64 ~~~a~~~l~~~~iG~GiL~l---P~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G 140 (404)
.....+-.+.+++|+|.=+= =.=|..-|+. |....++.+++-..+..++.+..++.+ ..+|.|..++.+|
T Consensus 5 ~~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~------a~~y~~~~~~v~~ 77 (349)
T COG3949 5 FMRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN------ATSYREILKYVSG 77 (349)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc------ccchHHHHHHHhh
Confidence 44566777789999997652 2235666776 677777777777777788887776433 2399999999999
Q ss_pred CCcceeee
Q 015596 141 GKKVIFCG 148 (404)
Q Consensus 141 ~~~~~l~~ 148 (404)
++...+.+
T Consensus 78 ~~~~ki~d 85 (349)
T COG3949 78 PKFAKIID 85 (349)
T ss_pred HHHHHHHH
Confidence 98665443
No 59
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=94.25 E-value=7.1 Score=39.71 Aligned_cols=83 Identities=11% Similarity=-0.039 Sum_probs=49.0
Q ss_pred CCCCccccccHHHHHHHHHhhhhhHhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHH----HHHHHhhhcCCCCCCccc
Q 015596 54 DDGRLKRTGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVAGPTVLILFALVNLYTA----NLLSQCYRSGDPVTGQRN 128 (404)
Q Consensus 54 ~~~~~~r~~s~~~a~~~l~~~~iG~Gi-L~lP~af~~~G~~~g~~~l~~~~~~~~~s~----~lL~~~~~~~~~~~g~~~ 128 (404)
|.....|+.+++...+.+..+.+|++. ++.|-...+.|+........ .....+.+. ..+.+..+ +.| .
T Consensus 34 dy~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~--~ 106 (471)
T TIGR02119 34 EYFLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMI-QVPTGYFVLGVLGKKFAIISR----KYN--A 106 (471)
T ss_pred ceeEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HcC--C
Confidence 345556777899999999999998655 47888888888642111110 001111111 12222233 223 4
Q ss_pred ccHHHHHHHHcCCCc
Q 015596 129 YTYMDAVKANLGGKK 143 (404)
Q Consensus 129 ~~y~~l~~~~~G~~~ 143 (404)
.|..|..+.-||++.
T Consensus 107 ~T~~e~l~~Ryg~~~ 121 (471)
T TIGR02119 107 ITINDVLKARYNNKF 121 (471)
T ss_pred ccHHHHHHHHcCCCc
Confidence 599999999999664
No 60
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=94.16 E-value=7 Score=39.27 Aligned_cols=147 Identities=18% Similarity=0.180 Sum_probs=83.1
Q ss_pred hhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC-chhhhcccCCCCChHHHHHHHHHHHH
Q 015596 178 SFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA-PNNLLTGFGFYNPYWLIDIANAAIVV 256 (404)
Q Consensus 178 ~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~-~~~il~~~~~~~~~~~~~~~~~~~~i 256 (404)
..-....+..+-+|+|++ ++.-.....+....+.+-+.+|.+...+=|+.. .......++. +-..+.+..++
T Consensus 208 sw~~~~aDysRy~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~-----~g~~~~lil~l 280 (442)
T COG1457 208 SWGPYAADYSRYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG-----FGLPAILILVL 280 (442)
T ss_pred hhhhhhhhhhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc-----HHHHHHHHHHH
Confidence 445667777788888733 356666777788888899999999999999887 5555555531 23344444444
Q ss_pred HHHhhhhcccccHHHHHHHHhhccCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHh----hcCChHHHH
Q 015596 257 HLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM----LLPFFNDVV 332 (404)
Q Consensus 257 ~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~----~vp~~~~i~ 332 (404)
..+.+--..+++..-.+.... ++. +| ..+.++..+. +.+++|+ +..+++.++
T Consensus 281 ~~~ttN~~nlYsa~ls~~~i~----~~l--------------~k----~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl 336 (442)
T COG1457 281 GTVTTNANNLYSAGLSFANII----PKL--------------SK----VTRVVIAGVG--IGTLLALAGPFFYNFFENFL 336 (442)
T ss_pred HHHhcCcHHHHHHHHHHHHhh----hhh--------------hh----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333333332 110 00 1222222221 3333333 356788899
Q ss_pred HHHhhhhhhhHHHHhhHHhHHhhc
Q 015596 333 GILGAMGFWPLTVYFPIEMYKAQK 356 (404)
Q Consensus 333 ~liGa~~~~~l~fi~P~l~yl~~~ 356 (404)
.++|+... +..-+.=+-.|+..|
T Consensus 337 ~~i~~~i~-P~~~I~iad~~~~rr 359 (442)
T COG1457 337 LLLGYFIP-PWGGVMIADYFIVRR 359 (442)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhc
Confidence 99998775 444444455554443
No 61
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=93.87 E-value=8.8 Score=39.40 Aligned_cols=88 Identities=17% Similarity=-0.034 Sum_probs=52.3
Q ss_pred CCCCccccccHHHHHHHHHhhhhh-HhhhHHHHHHHHhChhHHHHHHH---HHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 015596 54 DDGRLKRTGNFWTTSSHIITAVIG-SGVLSLAWAIAQLGWVAGPTVLI---LFALVNLYTANLLSQCYRSGDPVTGQRNY 129 (404)
Q Consensus 54 ~~~~~~r~~s~~~a~~~l~~~~iG-~GiL~lP~af~~~G~~~g~~~l~---~~~~~~~~s~~lL~~~~~~~~~~~g~~~~ 129 (404)
|.....|+.+.+-..+...-+.++ .-.+++|-...+.|+........ +..+...+-...+.+-.+ ..| ..
T Consensus 32 dy~~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~----~~~--~~ 105 (493)
T COG0591 32 DYFLGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK----ARG--AT 105 (493)
T ss_pred HHhccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccC--Cc
Confidence 334445555556677777777776 88889999999999875333333 222222222333333322 223 45
Q ss_pred cHHHHHHHHcC-CCcceee
Q 015596 130 TYMDAVKANLG-GKKVIFC 147 (404)
Q Consensus 130 ~y~~l~~~~~G-~~~~~l~ 147 (404)
|..|..+.-|| +..+.+.
T Consensus 106 T~~d~l~~Rf~s~~lr~l~ 124 (493)
T COG0591 106 TIPDFLEARFGSKILRILS 124 (493)
T ss_pred cHHHHHHHHcCChHHHHHH
Confidence 99999999999 5444443
No 62
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=93.83 E-value=1.1 Score=47.19 Aligned_cols=187 Identities=17% Similarity=0.224 Sum_probs=92.3
Q ss_pred HHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHh-HHHh--------hcCCCCchhhhcccCCCCChHHHH----HHHHHH
Q 015596 188 DTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC-MGYA--------AFGDLAPNNLLTGFGFYNPYWLID----IANAAI 254 (404)
Q Consensus 188 ~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~-~gy~--------~fG~~~~~~il~~~~~~~~~~~~~----~~~~~~ 254 (404)
.++|++. |..+.-...|...++.+|+...+ +|.. .||+++.+++....-.+...|.+. +.-.+.
T Consensus 434 GDLkDaQ---kSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~IGsFlST~GA 510 (1075)
T KOG2082|consen 434 GDLKDAQ---KSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIVIGSFLSTCGA 510 (1075)
T ss_pred ccccchh---hcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceeeehhHHHHHhHH
Confidence 5566652 55666677788888888874433 3332 688888887755432223345333 333455
Q ss_pred HHHHHhhhhcccccHHHHHHHHhhccCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHH
Q 015596 255 VVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGI 334 (404)
Q Consensus 255 ~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~l 334 (404)
.++.+++-|.++|.+.+ ++++....|..+ .++ ..-| .+.+++.++.+-+++++-+++.+-.+
T Consensus 511 gLQsLtgAPRLLQAIAk--D~IiPfL~~F~~-~~~---ngEP------------t~aLlLT~~Ice~gILigslD~iApi 572 (1075)
T KOG2082|consen 511 GLQSLTGAPRLLQAIAK--DDIIPFLAPFGH-GKA---NGEP------------TWALLLTAIICECGILIGSLDLIAPI 572 (1075)
T ss_pred HHhhhcCcHHHHHHHhh--cCccchhhhhcc-ccC---CCCc------------cHHHHHHHHHHHhhheeechhHHHHH
Confidence 66777777877665433 232211111110 001 0112 22334444455566677777776666
Q ss_pred HhhhhhhhHHHHhhHHhHHh--hccCCCcchh-----HHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhcc
Q 015596 335 LGAMGFWPLTVYFPIEMYKA--QKKIGRGTTR-----WLGLQILNVSCFFITLVAAI------GSVAGVVLDLKTY 397 (404)
Q Consensus 335 iGa~~~~~l~fi~P~l~yl~--~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~------~si~~ii~~~~~~ 397 (404)
+.-++ .+||.|--+.--. +-+.+.|++| |.+..+=..+|+.+++...+ ..+.++|-++-+|
T Consensus 573 lsmFF--LMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SWyyAlvAm~~a~~IYKYiEy 646 (1075)
T KOG2082|consen 573 LSMFF--LMCYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSWYYALVAMLIAGVIYKYIEY 646 (1075)
T ss_pred HHHHH--HHHHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 65433 5555544433322 2233444443 32323333445555544322 3445666655554
No 63
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=92.88 E-value=0.64 Score=45.11 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=66.5
Q ss_pred CCCccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 015596 55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (404)
Q Consensus 55 ~~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l 134 (404)
|+.++-..+.+..+-+=..++-|+|-+-=|-.-++.||+++.+++++.+++.---.....-.... |.+ ..+.+|+
T Consensus 45 DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~Sv---R~~--G~Si~~i 119 (376)
T PF02554_consen 45 DGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASV---RHK--GKSIGEI 119 (376)
T ss_pred CCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhh---cCC--CccHHHH
Confidence 44444444567778888899999999999999999999999999888777665555555443321 222 2389999
Q ss_pred HHHHcCCCcceeeee
Q 015596 135 VKANLGGKKVIFCGL 149 (404)
Q Consensus 135 ~~~~~G~~~~~l~~~ 149 (404)
+++..|++++.+..+
T Consensus 120 ~~~~lG~~~~~lf~~ 134 (376)
T PF02554_consen 120 AGKYLGKRAKKLFLI 134 (376)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999876544
No 64
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=92.81 E-value=0.79 Score=45.83 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHhhhhhHh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHH
Q 015596 61 TGNFWTTSSHIITAVIGSG-VLSLAWAIAQLGWVAGPTVLILFALVNLYT 109 (404)
Q Consensus 61 ~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~s 109 (404)
+.|-+++.+..+.+.+|+| |+++|.|.+..| ..+++++-+.+++..-+
T Consensus 46 ~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~ 94 (425)
T TIGR00835 46 GVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMAT 94 (425)
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHH
Confidence 4688999999999999998 999999977776 45666655555444433
No 65
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=92.76 E-value=1.6 Score=43.42 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=45.6
Q ss_pred cccccHHHHHHHHHhhhhhH-hhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596 59 KRTGNFWTTSSHIITAVIGS-GVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (404)
Q Consensus 59 ~r~~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~ 137 (404)
.|+.+++...+++..+.+|+ .+++.|-...+.|+.. ....+...........++.+-.++ .+ ..|..|.-++
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~----~~--~~T~~e~~~~ 77 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRR----SG--AVTIPEYLEK 77 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHH----TT----SHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcc----cc--hhhhhhhhhh
Confidence 35567888888888888886 5668899988889863 222222222223333444444442 22 4599999999
Q ss_pred HcCCCc
Q 015596 138 NLGGKK 143 (404)
Q Consensus 138 ~~G~~~ 143 (404)
-||++.
T Consensus 78 Ryg~~~ 83 (406)
T PF00474_consen 78 RYGSKA 83 (406)
T ss_dssp HT-HHH
T ss_pred hcCCch
Confidence 999988
No 66
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=92.19 E-value=15 Score=37.50 Aligned_cols=84 Identities=11% Similarity=-0.010 Sum_probs=47.7
Q ss_pred CCCCccccccHHHHHHHHHhhhhhH-hhhHHHHHHHHhChhHHHHHH--HHHHHHH-HHHHHHHHHhhhcCCCCCCcccc
Q 015596 54 DDGRLKRTGNFWTTSSHIITAVIGS-GVLSLAWAIAQLGWVAGPTVL--ILFALVN-LYTANLLSQCYRSGDPVTGQRNY 129 (404)
Q Consensus 54 ~~~~~~r~~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~g~~~l--~~~~~~~-~~s~~lL~~~~~~~~~~~g~~~~ 129 (404)
|.-...|+.+++...+.+..+.+|+ ..++.|....+.|+....... .....+. .+-...+.+..++ .+ ..
T Consensus 35 dy~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~----~~--~~ 108 (483)
T PRK09442 35 EYFLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK----YN--AV 108 (483)
T ss_pred ceeeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC--Cc
Confidence 3444566677888888888887775 556788877777864211110 1111111 1112222233332 22 46
Q ss_pred cHHHHHHHHcCCCc
Q 015596 130 TYMDAVKANLGGKK 143 (404)
Q Consensus 130 ~y~~l~~~~~G~~~ 143 (404)
|..|..+.-||++.
T Consensus 109 T~~e~l~~Ryg~~~ 122 (483)
T PRK09442 109 TLNDMLRARYQSRL 122 (483)
T ss_pred cHHHHHHHHhCChH
Confidence 99999999998764
No 67
>PRK12488 acetate permease; Provisional
Probab=90.62 E-value=24 Score=36.79 Aligned_cols=87 Identities=17% Similarity=0.099 Sum_probs=51.7
Q ss_pred CCCCCccccccHHHHHHHHHhhhhhHh-hhHHHHHHHHhChhHHHHHHHHHHHHHHH-HHHHHHHhhhcCCCCCCccccc
Q 015596 53 DDDGRLKRTGNFWTTSSHIITAVIGSG-VLSLAWAIAQLGWVAGPTVLILFALVNLY-TANLLSQCYRSGDPVTGQRNYT 130 (404)
Q Consensus 53 ~~~~~~~r~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~-s~~lL~~~~~~~~~~~g~~~~~ 130 (404)
+|..--.|+.++|...+.+..+.++++ .++.|-...+.|+-. .. ..+...+.+. ...++.+-.+ +.| ..|
T Consensus 60 ~df~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~-~~~g~~~g~~~~~~~~a~~lr----~~g--~~T 131 (549)
T PRK12488 60 SDFYTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LL-YALGVLAGWPIILFLIAERLR----NLG--KYT 131 (549)
T ss_pred HHHeeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HH-HHHHHHHHHHHHHHHHHHHHH----HCC--Ccc
Confidence 445556777888888999988888766 468999888888753 21 1111111111 1223333333 233 368
Q ss_pred HHHHHHHHcCCC-cceee
Q 015596 131 YMDAVKANLGGK-KVIFC 147 (404)
Q Consensus 131 y~~l~~~~~G~~-~~~l~ 147 (404)
..|..+.=||.+ .+.+.
T Consensus 132 ~~d~l~~Rf~s~~~r~la 149 (549)
T PRK12488 132 FADVVSYRLAQGPVRLTA 149 (549)
T ss_pred hHHHHHHHcCCCcchHHH
Confidence 999888888743 44443
No 68
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=89.78 E-value=22 Score=35.35 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=48.4
Q ss_pred ccccHHHHHHHHHhhhhhH-hhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHH
Q 015596 60 RTGNFWTTSSHIITAVIGS-GVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKAN 138 (404)
Q Consensus 60 r~~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~ 138 (404)
|+.+++...+.+..+.+|+ ..++.|....+.|+.. ....+...........+..+..+ +.| ..|..|..+.-
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~T~~e~l~~R 75 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAI-GFYELGALVLLIILGWLFVPIFI----NNG--AYTMPEYLEKR 75 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----HcC--CCchhHHHHHH
Confidence 5566788888887777775 4557888888888642 22222222222333444444443 223 46999999999
Q ss_pred cCCC-ccee
Q 015596 139 LGGK-KVIF 146 (404)
Q Consensus 139 ~G~~-~~~l 146 (404)
||++ .+.+
T Consensus 76 yg~~~~~~~ 84 (407)
T TIGR00813 76 FGKRILRGL 84 (407)
T ss_pred hCchHHHHH
Confidence 9984 4443
No 69
>PRK11017 codB cytosine permease; Provisional
Probab=88.10 E-value=30 Score=34.49 Aligned_cols=52 Identities=15% Similarity=0.031 Sum_probs=29.8
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCCcceeee
Q 015596 90 LGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCG 148 (404)
Q Consensus 90 ~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~l~~ 148 (404)
+++.-+++..++...+...-..+...... ++| .++..+.|..||.+|.++..
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~----k~G---~~~~v~sR~~FG~~Gs~l~~ 90 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGA----KTG---LSTHLLARFSFGEKGSWLPS 90 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccC---cCHHHHHHHHhchhHHHHHH
Confidence 44555555555554443333333333322 333 57999999999999876543
No 70
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=87.45 E-value=6.6 Score=39.34 Aligned_cols=182 Identities=13% Similarity=0.055 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHh
Q 015596 199 TMKKATLFSIIVT-TTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWS 277 (404)
Q Consensus 199 ~~~~~~~~a~~~~-~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~ 277 (404)
+-+++...+..+. .+-.++....++..||.--+...-+-....+.......+..........+++...+++++..-..+
T Consensus 222 ~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFl 301 (415)
T COG0814 222 NSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFL 301 (415)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence 4444344444444 444557777788888764443333333333334444444445555556899999999887765544
Q ss_pred hccCCCCccccccccCCCCCcccc-ccchhhHHHHHHHHHHHHHHHhhcC-ChHHHHHHHhhhhhhhHHHHhhHHhHHhh
Q 015596 278 AKKWPKSDLVTAEYEIPIPFWGVY-QLNLFRLVWRTLFVVLTTLISMLLP-FFNDVVGILGAMGFWPLTVYFPIEMYKAQ 355 (404)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~r~~~v~~~~~ia~~vp-~~~~i~~liGa~~~~~l~fi~P~l~yl~~ 355 (404)
+..-.-.+..++. -+| +.+..|..........+++.++..| -+....+..|++...+.+-++|.+++++-
T Consensus 302 gv~lg~~~~~~~~--------~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p 373 (415)
T COG0814 302 GVYLGLFEGLADL--------FKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKP 373 (415)
T ss_pred CchhhHHHhhhHH--------HHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2110000001110 111 2223355555555566777777777 57788888998999999999999999996
Q ss_pred ccCCC---cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015596 356 KKIGR---GTTRWLGLQILNVSCFFITLVAAIGSVA 388 (404)
Q Consensus 356 ~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~si~ 388 (404)
++... ..+++........+-+++|+......+.
T Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~ 409 (415)
T COG0814 374 RKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFL 409 (415)
T ss_pred HHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHH
Confidence 54331 2222222223555656666666555544
No 71
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=86.79 E-value=1.4 Score=44.89 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=65.9
Q ss_pred CCCccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 015596 55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (404)
Q Consensus 55 ~~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l 134 (404)
||.++-..+.+-.+-|=.-++-|+|-+-=|---+|.||.++.+++++.+++.---...++-.... |.+ ..|.+|+
T Consensus 45 DG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~Sv---R~~--G~Si~~i 119 (575)
T COG1966 45 DGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSV---RHG--GKSIGEI 119 (575)
T ss_pred CCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeee---ccC--CccHHHH
Confidence 44444334456677777888999999999999999999999999988887766555555443321 222 2389999
Q ss_pred HHHHcCCCcceeee
Q 015596 135 VKANLGGKKVIFCG 148 (404)
Q Consensus 135 ~~~~~G~~~~~l~~ 148 (404)
+++.+|+..+.+..
T Consensus 120 a~~~lG~~a~~~~~ 133 (575)
T COG1966 120 AGKYLGRTAKVFFL 133 (575)
T ss_pred HHHHhhhhHHHHHH
Confidence 99999999886543
No 72
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=86.78 E-value=29 Score=34.35 Aligned_cols=57 Identities=25% Similarity=0.362 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHH-HhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhh
Q 015596 166 SLQALGAIAFAYSFSIILLEIQD-TIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA 225 (404)
Q Consensus 166 ~~~~~~~~~faf~~~~~i~~i~~-~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~ 225 (404)
.+.+++-++|+ ..++..+.. ++|+|++..++.-++-.++......+|...+..|...
T Consensus 186 TmD~laal~fg---~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~ 243 (378)
T TIGR00796 186 TMDALAALVFG---IIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATS 243 (378)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34455555554 456666666 8888742222222333334555566666666666544
No 73
>PRK15015 carbon starvation protein A; Provisional
Probab=86.53 E-value=3.3 Score=43.29 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCCcc
Q 015596 65 WTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKV 144 (404)
Q Consensus 65 ~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~ 144 (404)
+--+-|=..++-|+|-+-=|..-++.||+++.+++++.+++.---.....-.... |.+ ..|.+|++++..|++++
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~---R~~--GrSig~ia~~~iG~~~~ 160 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVST---RRD--GRSLGELVKEEMGPTAG 160 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeee---cCC--CccHHHHHHHHhhHHHH
Confidence 4556677889999999999999999999999999888776554444444332211 222 23899999999999988
Q ss_pred eeeeee
Q 015596 145 IFCGLI 150 (404)
Q Consensus 145 ~l~~~~ 150 (404)
.+..+.
T Consensus 161 ~lfli~ 166 (701)
T PRK15015 161 VIALVA 166 (701)
T ss_pred HHHHHH
Confidence 765443
No 74
>PHA02764 hypothetical protein; Provisional
Probab=80.60 E-value=15 Score=35.04 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=53.5
Q ss_pred cccccHHHHHH-HHHhhhhhHhhhHHHHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596 59 KRTGNFWTTSS-HIITAVIGSGVLSLAWAIAQL--GWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (404)
Q Consensus 59 ~r~~s~~~a~~-~l~~~~iG~GiL~lP~af~~~--G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~ 135 (404)
-|..+.+.+++ |+.+...|.++ +.|+-++.. |.- .+..+++.++++........+.+...++..| .+.|-+
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAGG--dYVYIS-- 84 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNGG--DYAYIR-- 84 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc--eEEEhH--
Confidence 34556777776 88777777765 556533333 443 5567777777777777777887777665444 356655
Q ss_pred HHHcCCCcceeee
Q 015596 136 KANLGGKKVIFCG 148 (404)
Q Consensus 136 ~~~~G~~~~~l~~ 148 (404)
+++|+....+.+
T Consensus 85 -RAFGP~~GFLvG 96 (399)
T PHA02764 85 -TAFSSKFYTIFG 96 (399)
T ss_pred -HhhCccHHHHHH
Confidence 778886655443
No 75
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=78.93 E-value=1.7 Score=43.75 Aligned_cols=83 Identities=16% Similarity=0.071 Sum_probs=37.2
Q ss_pred ccccccHHHHHHHHHhhhhhHhhhHHHHHHHH--hChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596 58 LKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQ--LGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (404)
Q Consensus 58 ~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~--~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~ 135 (404)
++|+.+.++-+..-....+....+.+-..... .++.-+++.+++..++...-..+...... ++| .++..+.
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~----r~G---l~~~v~s 77 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP----RTG---LPTMVLS 77 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH----CC------HHHHT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc----ccC---CCchhcc
Confidence 34555555554444444433333333222222 33444555555555555444444444333 344 3678888
Q ss_pred HHHcCCCcceee
Q 015596 136 KANLGGKKVIFC 147 (404)
Q Consensus 136 ~~~~G~~~~~l~ 147 (404)
|..||.+|..+.
T Consensus 78 R~~FG~~Gs~l~ 89 (440)
T PF02133_consen 78 RASFGYRGSKLP 89 (440)
T ss_dssp TTTS-TTTTHHH
T ss_pred hhccCcchHHHH
Confidence 889998887543
No 76
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=77.83 E-value=93 Score=32.40 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=47.3
Q ss_pred CCCCccccccHHHHHHHHHhhhhh-HhhhHHHHHHHHhChhHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCCCcccccH
Q 015596 54 DDGRLKRTGNFWTTSSHIITAVIG-SGVLSLAWAIAQLGWVAGPTVLILFALVNL-YTANLLSQCYRSGDPVTGQRNYTY 131 (404)
Q Consensus 54 ~~~~~~r~~s~~~a~~~l~~~~iG-~GiL~lP~af~~~G~~~g~~~l~~~~~~~~-~s~~lL~~~~~~~~~~~g~~~~~y 131 (404)
|.---.|+.++|...+.+..+.++ +..++.|-...+.|+-. ....+ ...+.+ ....++.+-.+ +.| .+|.
T Consensus 61 dy~laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~-~~~~~-g~~~~~~i~~~~~a~~lr----r~g--~~T~ 132 (549)
T TIGR02711 61 DYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDG-LIYSL-GFLVGWPIILFLIAERLR----NLG--RYTF 132 (549)
T ss_pred hheeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHHH-HHHHHHHHHHHHHHHHHH----HcC--CccH
Confidence 444456666777777777777776 56789998888888753 22111 111111 22233344333 233 3689
Q ss_pred HHHHHHHcCCC
Q 015596 132 MDAVKANLGGK 142 (404)
Q Consensus 132 ~~l~~~~~G~~ 142 (404)
.|..+.=||.+
T Consensus 133 ~d~l~~Rf~s~ 143 (549)
T TIGR02711 133 ADVASYRLKQR 143 (549)
T ss_pred HHHHHHHcCCc
Confidence 99888877754
No 77
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=75.04 E-value=1e+02 Score=31.48 Aligned_cols=88 Identities=13% Similarity=0.000 Sum_probs=49.1
Q ss_pred CCCCccccccHHHHHHHHHhhhhhHh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCcccccH
Q 015596 54 DDGRLKRTGNFWTTSSHIITAVIGSG-VLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDP-VTGQRNYTY 131 (404)
Q Consensus 54 ~~~~~~r~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~-~~g~~~~~y 131 (404)
|.--..|+.+++...+.+..+.+++. .++.|....+.|+... ...+...+.......++.+-.+...+ +. +..|-
T Consensus 30 df~lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~-~~~~g~~~~~~~~~~~~~~~~r~~~~~~~--~~~T~ 106 (487)
T TIGR02121 30 DYVLGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSEL-WIAIGLTIGAYINWKFVAPRLRVYTEAAH--NSITL 106 (487)
T ss_pred HHeeeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhc--CCccH
Confidence 34445667778888888888877754 5678888778887532 11111111122223333332221110 11 24588
Q ss_pred HHHHHHHcCCCcc
Q 015596 132 MDAVKANLGGKKV 144 (404)
Q Consensus 132 ~~l~~~~~G~~~~ 144 (404)
.|..+.=||++.+
T Consensus 107 ~e~l~~Ryg~~~~ 119 (487)
T TIGR02121 107 PDFFENRFNDKSR 119 (487)
T ss_pred HHHHHHHhCCCCc
Confidence 8998888987544
No 78
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=71.24 E-value=1.2e+02 Score=30.61 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHH-hcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhh
Q 015596 165 RSLQALGAIAFAYSFSIILLEIQDT-IRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA 225 (404)
Q Consensus 165 ~~~~~~~~~~faf~~~~~i~~i~~~-m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~ 225 (404)
+.+.+++-++|+- .++..+.+. .++++.-.|...++-.++.....++|...+..|...
T Consensus 195 ~TMDalaal~Fg~---iii~~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s 253 (439)
T PRK15433 195 LTMDTLGAMVFGI---VIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDS 253 (439)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3567777777775 344444432 444422223344456667777788888888888754
No 79
>PRK09395 actP acetate permease; Provisional
Probab=70.75 E-value=1.4e+02 Score=31.12 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=49.5
Q ss_pred CCCCccccccHHHHHHHHHhhhhhH-hhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHH
Q 015596 54 DDGRLKRTGNFWTTSSHIITAVIGS-GVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYM 132 (404)
Q Consensus 54 ~~~~~~r~~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~ 132 (404)
|.---.|+.++|...+.+..+.+|+ ..++.|-.....|+.. ....+...+.......++.+-.+ +.| .+|+.
T Consensus 63 df~~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r----~~g--~~T~~ 135 (551)
T PRK09395 63 DFYTAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLR----NLG--KYTFA 135 (551)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHh----hCC--CccHH
Confidence 3444566677888888888888875 4568998888888753 21111111111111222333223 233 36999
Q ss_pred HHHHHHcCCC-ccee
Q 015596 133 DAVKANLGGK-KVIF 146 (404)
Q Consensus 133 ~l~~~~~G~~-~~~l 146 (404)
|..+.=||.+ .+.+
T Consensus 136 d~l~~Rygs~~~r~l 150 (551)
T PRK09395 136 DVASYRLKQGPIRTL 150 (551)
T ss_pred HHHHHHcCCchHHHH
Confidence 9998888854 4444
No 80
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=66.96 E-value=1.5e+02 Score=29.92 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhhhHhhhHHHHHH-HHhC--hhHHHHHHHHHHH
Q 015596 64 FWTTSSHIITAVIGSGVLSLAWAI-AQLG--WVAGPTVLILFAL 104 (404)
Q Consensus 64 ~~~a~~~l~~~~iG~GiL~lP~af-~~~G--~~~g~~~l~~~~~ 104 (404)
.....+.+..-..|+|=|=.|-.. .++| |+.+.+.+++.++
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV 48 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGV 48 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHH
Confidence 566677778888888888887653 2333 6666666655553
No 81
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=65.78 E-value=1.9e+02 Score=30.92 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 015596 167 LQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG 222 (404)
Q Consensus 167 ~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g 222 (404)
-..+|++.=+-.+...=-.+-.|+|+|+ |..++-...++..++++|+++.++-
T Consensus 297 ~~~FgV~F~g~tGimAGAnMSgELk~PS---kSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 297 ASTFGVFFPGTTGIMAGANMSGELKAPS---KSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred hhhheeeeccchhhhcCCCcCccccCcc---ccCCccchHHHHHHHHHHHHHHHHh
Confidence 3444444333333333334568999996 7899999999999999999887654
No 82
>PRK10484 putative transporter; Provisional
Probab=60.82 E-value=2.1e+02 Score=29.57 Aligned_cols=85 Identities=12% Similarity=-0.006 Sum_probs=48.3
Q ss_pred CCCCCccccccHHHHHHHHHhhhhhHh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccH
Q 015596 53 DDDGRLKRTGNFWTTSSHIITAVIGSG-VLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTY 131 (404)
Q Consensus 53 ~~~~~~~r~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y 131 (404)
+|..-..|+.+++-..+.+..+.++++ .++.|-...+.|+.... ..............++..-.+ +.| ..|.
T Consensus 31 ~dyflagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~----r~~--~~T~ 103 (523)
T PRK10484 31 DGYFLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEVTAAIALIILALIFLPRYL----KSG--ITTI 103 (523)
T ss_pred hhheecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHH----hcC--CccH
Confidence 445566777888888888888877755 45788887778865311 111111111112222332222 222 4577
Q ss_pred HHHHHHHcCCCcc
Q 015596 132 MDAVKANLGGKKV 144 (404)
Q Consensus 132 ~~l~~~~~G~~~~ 144 (404)
.|..+.-||++.+
T Consensus 104 ~e~l~~Ryg~~~~ 116 (523)
T PRK10484 104 PDFLEERYDKTTR 116 (523)
T ss_pred HHHHHHhcCchhH
Confidence 8888877777644
No 83
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=60.36 E-value=2.1e+02 Score=29.40 Aligned_cols=42 Identities=17% Similarity=-0.005 Sum_probs=31.7
Q ss_pred CCCCCccccccHHHHHHHHHhhhhhHhh-hHHHHHHHHhChhH
Q 015596 53 DDDGRLKRTGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVA 94 (404)
Q Consensus 53 ~~~~~~~r~~s~~~a~~~l~~~~iG~Gi-L~lP~af~~~G~~~ 94 (404)
+|.--..|+.++|...+.+.-+.+++.. ++.|....+.|+-.
T Consensus 33 ~dy~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~ 75 (502)
T PRK15419 33 DDYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE 75 (502)
T ss_pred hHheeeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH
Confidence 3455557777888889988888888665 47899888889753
No 84
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=59.14 E-value=2e+02 Score=28.86 Aligned_cols=54 Identities=17% Similarity=-0.007 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccC
Q 015596 305 LFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKI 358 (404)
Q Consensus 305 ~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~ 358 (404)
.+|..+|.+..+.++++.+.+-+...++.+.+.+.+..+-+..++++++-.+|+
T Consensus 325 ~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 325 RRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 567788877777766666666699999999999988888888888888877665
No 85
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=57.68 E-value=9.2 Score=25.16 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC
Q 015596 200 MKKATLFSIIVTTTFYLLCGCMGYAAFGDLA 230 (404)
Q Consensus 200 ~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 230 (404)
|..+..+++.+.+++..+.|..-|.+||+..
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4556777888888888888888888999864
No 86
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=54.89 E-value=11 Score=24.57 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCCCC
Q 015596 203 ATLFSIIVTTTFYLLCGCMGYAAFGDLA 230 (404)
Q Consensus 203 ~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 230 (404)
+..+++.+.+++-.+.|..-|.+||+..
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 4566777778888888888899999754
No 87
>CHL00020 psbN photosystem II protein N
Probab=53.87 E-value=9 Score=24.86 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCCCC
Q 015596 203 ATLFSIIVTTTFYLLCGCMGYAAFGDLA 230 (404)
Q Consensus 203 ~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 230 (404)
+..+++.+.+++..+.|..-|.+||+..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 5667777777777788888888999864
No 88
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=52.83 E-value=84 Score=27.87 Aligned_cols=65 Identities=14% Similarity=-0.061 Sum_probs=40.7
Q ss_pred hHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCCc--------ch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015596 328 FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRG--------TT--RWLGLQILNVSCFFITLVAAIGSVAGVVL 392 (404)
Q Consensus 328 ~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~~--------~~--~~~~~~~~~~~~~~~~v~~~~~si~~ii~ 392 (404)
+....=+.|++.+.-+..++|+...+..+++.-- .. .-....+.+.++++-++++++.|..++.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445667888888999999999999998876321 11 11233344455555555555556655554
No 89
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=52.67 E-value=47 Score=30.29 Aligned_cols=78 Identities=12% Similarity=0.131 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHH---------hhhhhhhHHHHhhHHhHHhhccCC-C----cchhHHHHHHHHHHHHHHH
Q 015596 314 FVVLTTLISMLLPFFNDVVGIL---------GAMGFWPLTVYFPIEMYKAQKKIG-R----GTTRWLGLQILNVSCFFIT 379 (404)
Q Consensus 314 ~v~~~~~ia~~vp~~~~i~~li---------Ga~~~~~l~fi~P~l~yl~~~~~~-~----~~~~~~~~~~~~~~~~~~~ 379 (404)
+.+.++++|..++.++.++..+ ||.++--|.++= |+.+-+.. . .....|+.|+++++|+++.
T Consensus 162 ~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~ 237 (262)
T KOG4812|consen 162 IFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLF 237 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHHH
Confidence 3445666677777777766654 777777777775 33332221 1 1112455667777777777
Q ss_pred HHHHHH--HHHHHHHhhh
Q 015596 380 LVAAIG--SVAGVVLDLK 395 (404)
Q Consensus 380 v~~~~~--si~~ii~~~~ 395 (404)
+-+++. .|+..-+.++
T Consensus 238 lr~~i~YikVrrm~~~~s 255 (262)
T KOG4812|consen 238 LRGFINYIKVRRMEEKYS 255 (262)
T ss_pred HHHHHhHHHHhhHHHHHh
Confidence 766653 4444444443
No 90
>PRK12768 CysZ-like protein; Reviewed
Probab=47.82 E-value=2.2e+02 Score=26.21 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=20.6
Q ss_pred HHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 015596 187 QDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCG 219 (404)
Q Consensus 187 ~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g 219 (404)
..++.+| ++++++..++..+..+++...
T Consensus 9 ~~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 9 LARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4566665 688888888888887777654
No 91
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=46.45 E-value=1.5e+02 Score=25.77 Aligned_cols=21 Identities=5% Similarity=-0.162 Sum_probs=14.1
Q ss_pred hhhhhHHHHhhHHhHHhhccC
Q 015596 338 MGFWPLTVYFPIEMYKAQKKI 358 (404)
Q Consensus 338 ~~~~~l~fi~P~l~yl~~~~~ 358 (404)
+....+.+.+|+-+-++..+.
T Consensus 61 ilt~~~~~~lP~~~~l~a~~~ 81 (186)
T COG5052 61 ILTNVAGFSLPAQLSLVAFYT 81 (186)
T ss_pred HHHHHHHHHccHHHHHHHHHc
Confidence 455677788887777665543
No 92
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=42.50 E-value=35 Score=27.67 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=46.7
Q ss_pred ccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596 58 LKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (404)
Q Consensus 58 ~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~ 137 (404)
++||=.-|-. +.++-..+|.+++...- +.|-+.+...+++.-....|+..+..+=.....++++ ..|.|
T Consensus 31 nERTfl~wl~-~~vllg~l~~~l~n~~~---~~g~~~a~vftivaif~~~ya~~lY~kRa~~Ir~R~~---~pyDD---- 99 (126)
T COG5264 31 NERTFLSWLS-VTVLLGGLGFALYNSGD---RLGMISAYVFTIVAIFCGFYALMLYLKRAVNIRQRSA---GPYDD---- 99 (126)
T ss_pred chHHHHHHHH-HHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCcc----
Confidence 4554322333 33344567777777665 8888888888777777888888877653332222332 36777
Q ss_pred HcCCCcceeeee
Q 015596 138 NLGGKKVIFCGL 149 (404)
Q Consensus 138 ~~G~~~~~l~~~ 149 (404)
+.|..++++
T Consensus 100 ---~~GP~lv~v 108 (126)
T COG5264 100 ---RLGPTLVCV 108 (126)
T ss_pred ---ccCCchhHH
Confidence 555555443
No 93
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=35.89 E-value=4.8e+02 Score=26.42 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhhcCC---hHHHHHHHhhhhhhhHHHHhhHHhHHhhccC-CCcchhHHHHHHHHHHHHHHHHHHHHH
Q 015596 310 WRTLFVVLTTLISMLLPF---FNDVVGILGAMGFWPLTVYFPIEMYKAQKKI-GRGTTRWLGLQILNVSCFFITLVAAIG 385 (404)
Q Consensus 310 ~r~~~v~~~~~ia~~vp~---~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~ 385 (404)
+-.+++....+.....|. ...+++++|....+.+.=.+=+++-+..+|+ ++.+...+....+--.+.++.+.|..+
T Consensus 234 lPiiLI~~~t~~~~~~~~~~~~~~~~~flG~p~iALlig~l~a~~~l~~~~~~~~~~~~~~~~~al~~~g~IlLItgaGG 313 (441)
T PF02447_consen 234 LPIILILLGTVADLFLPKGSPLRSILSFLGDPNIALLIGVLIALYLLGRRRGMSREEVMKWLEKALKPAGMILLITGAGG 313 (441)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHhCCcHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHhhhcchH
Confidence 334444555566666654 5678888888766665555544444433332 222222344556667777788888888
Q ss_pred HHHHHHHh
Q 015596 386 SVAGVVLD 393 (404)
Q Consensus 386 si~~ii~~ 393 (404)
+..+++++
T Consensus 314 afg~vl~~ 321 (441)
T PF02447_consen 314 AFGQVLKD 321 (441)
T ss_pred HHHHHHHh
Confidence 88877765
No 94
>PRK05415 hypothetical protein; Provisional
Probab=30.25 E-value=3.1e+02 Score=26.66 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHH
Q 015596 64 FWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQ 115 (404)
Q Consensus 64 ~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~ 115 (404)
++.+...++...+|.++..+=-+|.+.-|+. .....+++++.......+.+
T Consensus 70 ~~~~l~~l~~~~~~~~~~~i~~~~~~~~wlg-~~~~~~~~~~~~~~~~~~~r 120 (341)
T PRK05415 70 LWGGLGLLGSLVVGQAVQWLRDAFQRSDWLG-LGAAVVGALIVLAGLGIVVR 120 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777888899998885 44445555555555544443
No 95
>COG4709 Predicted membrane protein [Function unknown]
Probab=27.88 E-value=56 Score=28.68 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=24.0
Q ss_pred cHHHHHHHHHhhhhhHhhhHHHHHH-HHhChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 015596 63 NFWTTSSHIITAVIGSGVLSLAWAI-AQLGWVAGPTVLILFALVNLYTANLLSQCY 117 (404)
Q Consensus 63 s~~~a~~~l~~~~iG~GiL~lP~af-~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~ 117 (404)
+..+++.++ +|.|+++.|... --.|.+..++.+++.++...++...++-+.
T Consensus 77 n~~~aii~~----~~L~~~~v~i~Lpl~~~vi~~viailv~~lt~if~~~a~~~ag 128 (195)
T COG4709 77 NVRRAIIAL----IGLGLLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALVAAG 128 (195)
T ss_pred chHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666554 455666666552 122333344444444444444444444443
No 96
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=27.76 E-value=6.4e+02 Score=25.34 Aligned_cols=60 Identities=23% Similarity=0.237 Sum_probs=42.5
Q ss_pred cccccHHHHHHHHHhhhhhHhhh-HHHHHHHHhChhHHHHHHHHHHH---HHHHHHHHHHHhhhc
Q 015596 59 KRTGNFWTTSSHIITAVIGSGVL-SLAWAIAQLGWVAGPTVLILFAL---VNLYTANLLSQCYRS 119 (404)
Q Consensus 59 ~r~~s~~~a~~~l~~~~iG~GiL-~lP~af~~~G~~~g~~~l~~~~~---~~~~s~~lL~~~~~~ 119 (404)
+++.|-++|++.-+.+.+|+|-+ +..-|.+-.|- ++++++-+.++ .+-|+=..|..-+|.
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmatk~~E~~La~~yR~ 79 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMATKYAEVTLAQKYRE 79 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHHHHHHHHheE
Confidence 33678899999999999999966 58888876665 36666655544 455555556555553
No 97
>PLN02680 carbon-monoxide oxygenase
Probab=27.73 E-value=3.6e+02 Score=24.67 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhccccc
Q 015596 198 KTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQP 268 (404)
Q Consensus 198 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 268 (404)
|+.+|.+.+..-...++..++|+..-..+-++. + ..|+.+ -+.|+=...-+++.++.+..+..+..|
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~-~~nfyS-lHSWlGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--G-IDNFYS-LHSWLGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--C-cccccc-HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 677888888888888888888886655554433 2 234421 247876677777777777776555544
No 98
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=27.47 E-value=6.4e+02 Score=25.31 Aligned_cols=88 Identities=11% Similarity=0.202 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhc--cCCCcchhHHHHHHHHHHHHHHHHHHHHHH-
Q 015596 310 WRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQK--KIGRGTTRWLGLQILNVSCFFITLVAAIGS- 386 (404)
Q Consensus 310 ~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s- 386 (404)
+.++..+.++++|.. .++.++. .....+.++.|..+-+..- -++.|+.+.+......++..++++.-...+
T Consensus 316 ~v~if~i~sflvan~--GL~~Ii~----isvPvL~~iYPiaI~Lv~l~~~~k~~~~~~~~y~~~l~~t~i~~i~d~l~~~ 389 (431)
T COG1114 316 WVIIFTLISFLVANL--GLEQIIK----ISVPVLTAIYPIAIALVLLSFARKLWKNSKRVYRLTLLVTLIISILDGLKAS 389 (431)
T ss_pred HHHHHHHHHHHHHHh--hHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhh
Confidence 344444455555443 3444443 4568889999988876631 112222222233333344444444433222
Q ss_pred -HHHHHHhhhccCCCCCC
Q 015596 387 -VAGVVLDLKTYKPFKTR 403 (404)
Q Consensus 387 -i~~ii~~~~~~~~f~~~ 403 (404)
+.....++-+.=|+++.
T Consensus 390 ~~~~~~~~~~~~LPl~~~ 407 (431)
T COG1114 390 GFKMILPNFFQHLPLAEY 407 (431)
T ss_pred hhhhhHHHHHHhCCHHhc
Confidence 33344555556666553
No 99
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=27.07 E-value=52 Score=28.64 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=7.8
Q ss_pred CCccccchhhhhh
Q 015596 7 TMPSRIHHGAVEE 19 (404)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (404)
++|.+..++.+++
T Consensus 16 ~lp~~e~~e~l~~ 28 (181)
T PF08006_consen 16 KLPEEEREEILEY 28 (181)
T ss_pred cCCHHHHHHHHHH
Confidence 4666666666653
No 100
>PRK11281 hypothetical protein; Provisional
Probab=26.43 E-value=1e+03 Score=27.34 Aligned_cols=30 Identities=20% Similarity=0.322 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Q 015596 199 TMKKATLFSIIVTTTFYLLCGCMGYAAFGD 228 (404)
Q Consensus 199 ~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~ 228 (404)
.-.+++.+++..+....+++..+||+.+..
T Consensus 541 ~T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 541 HTPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345567788777777888888899987753
No 101
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=24.95 E-value=3.4e+02 Score=25.60 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhc
Q 015596 314 FVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQK 356 (404)
Q Consensus 314 ~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~ 356 (404)
+....+++++.+|+++ ...+-.+.+.++.+.+|+..-++.-
T Consensus 6 ~~~~~~~~~~~~~~~~--~~~lr~~~g~~~vlf~PGy~l~~~l 46 (287)
T PF07760_consen 6 LLVLLALLAILVPDLN--IPPLRVILGFPFVLFLPGYALVAAL 46 (287)
T ss_pred HHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHhccHHHHHHH
Confidence 3445556666677765 5666677777888889999998865
No 102
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=24.73 E-value=3.2e+02 Score=20.81 Aligned_cols=61 Identities=7% Similarity=0.141 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC
Q 015596 166 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA 230 (404)
Q Consensus 166 ~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 230 (404)
-....|++..+-.|.....+..+.-.+|. ...++....+++ ..-+-++.|++.|..||.-.
T Consensus 13 ~vli~GIiLL~~ACIFAfidFSK~~s~~~--~~~wRalSii~F--IlG~vl~lGilifs~y~~C~ 73 (91)
T PHA02680 13 GVLICGVLLLTAACVFAFVDFSKNTSNVT--DYVWRALSVTCF--IVGAVLLLGLFVFSMYRKCS 73 (91)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCc--chhHHHHHHHHH--HHHHHHHHHHHHHHHhcccC
Confidence 34456777777777777778777665552 133443333333 34445677899999998333
No 103
>PHA03048 IMV membrane protein; Provisional
Probab=24.59 E-value=3e+02 Score=21.02 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCch
Q 015596 166 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPN 232 (404)
Q Consensus 166 ~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~ 232 (404)
.....|++..+-.|.....+..+. +.+ .+.+|++.+ +.+..-+-+++|++-|..||....+
T Consensus 13 ~vli~GIiLL~~aCIfAfidfsK~-k~~----~~~wRalsi-i~FIlgivl~lG~~ifsmy~r~C~~ 73 (93)
T PHA03048 13 TALIGGIILLAASCIFAFVDFSKN-KAT----VTVWRALSG-IAFVLGIVMTIGMLIYSMWGRYCTP 73 (93)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcC-CCc----chhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCC
Confidence 445667777777777777777776 322 234444333 3334445678899999999966443
No 104
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=23.27 E-value=3.2e+02 Score=26.09 Aligned_cols=20 Identities=15% Similarity=0.429 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhhccCC
Q 015596 380 LVAAIGSVAGVVLDLKTYKP 399 (404)
Q Consensus 380 v~~~~~si~~ii~~~~~~~~ 399 (404)
++|..+|...+.+.++..+|
T Consensus 289 ~ig~l~s~~s~~r~L~~~~~ 308 (309)
T PRK11026 289 MIGWVAAWLATVQHLRRFTP 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 34444555555555554433
No 105
>KOG4580 consensus Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=22.93 E-value=3.1e+02 Score=21.73 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=40.3
Q ss_pred ccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 015596 58 LKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD 133 (404)
Q Consensus 58 ~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~ 133 (404)
++||=.-|-. +.++-+.+|.+++...- +.|-..+.+..++.-....|+..+...=.....++++. .|.|
T Consensus 16 NERTFl~WL~-~tvlLg~l~~~l~n~~~---~~g~~~a~v~t~vaif~~~ya~~lYlwRa~~I~~R~~~---pyDd 84 (112)
T KOG4580|consen 16 NERTFLSWLS-VTVLLGGLGFALYNSGD---RLGILSAYVYTLVAIFCGFYALFLYLWRASMIRQRSPG---PYDD 84 (112)
T ss_pred chHHHHHHHH-HHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCC
Confidence 3454322322 33344567777777665 78888777777777777788887775433332223333 4665
No 106
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=22.70 E-value=8.1e+02 Score=24.82 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=34.1
Q ss_pred hhHHHHhhHHhHHhhccCCCcc----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015596 341 WPLTVYFPIEMYKAQKKIGRGT----------TRWLGLQILNVSCFFITLVAAIGSVAGVVLDL 394 (404)
Q Consensus 341 ~~l~fi~P~l~yl~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~si~~ii~~~ 394 (404)
++++-++|.++.+|.+.+|+.. .||...+.....|+..+..++.-++.++..++
T Consensus 357 sil~a~~~V~~vlkl~geEr~nr~eal~a~~vsR~~vl~syl~~all~~~l~tllAl~ga~L~~ 420 (536)
T COG3559 357 SILAAAFAVSLVLKLHGEERGNRAEALLAGAVSRTHVLASYLAMALLGSALATLLALVGAGLAY 420 (536)
T ss_pred HHHHHHHHHHHHHHHhhHhhcchHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788899999987555421 24445555556666666666666666655443
No 107
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=22.48 E-value=4.7e+02 Score=21.98 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=15.9
Q ss_pred CChHHHHHHHhh--hhhhhHHHHhhHHhHHhhc
Q 015596 326 PFFNDVVGILGA--MGFWPLTVYFPIEMYKAQK 356 (404)
Q Consensus 326 p~~~~i~~liGa--~~~~~l~fi~P~l~yl~~~ 356 (404)
-|.+...++++. ..-..+.-++|+++.++.+
T Consensus 55 Tn~~Ea~ells~~~~~~~l~~~vlP~~~l~~~~ 87 (156)
T PF08019_consen 55 TNTAEASELLSWKLILWLLLLGVLPALLLWRVR 87 (156)
T ss_pred cCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444432 3334445566777776654
No 108
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.46 E-value=5.1e+02 Score=22.35 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=29.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhccc
Q 015596 197 YKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGF 238 (404)
Q Consensus 197 ~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~ 238 (404)
||+.+++....+..-.++-+.+|-.-...||+...+|+-.|+
T Consensus 12 Rk~~n~v~~~~v~~lai~sl~~s~llI~lFg~~~~~nf~~Nl 53 (165)
T PF11286_consen 12 RKHLNRVIVACVASLAILSLAFSQLLIALFGGESGGNFHWNL 53 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeeH
Confidence 355566555555555666677777788899988888888776
No 109
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=22.13 E-value=8.7e+02 Score=24.98 Aligned_cols=60 Identities=10% Similarity=0.216 Sum_probs=38.1
Q ss_pred hhhhhHHHHHHHhcCCChhhhhhH--HHHHHHHHHHHHHHHHHHhHHHhhcCCC--CchhhhcccC
Q 015596 178 SFSIILLEIQDTIRSPPAEYKTMK--KATLFSIIVTTTFYLLCGCMGYAAFGDL--APNNLLTGFG 239 (404)
Q Consensus 178 ~~~~~i~~i~~~m~~p~~~~~~~~--~~~~~a~~~~~~~y~~~g~~gy~~fG~~--~~~~il~~~~ 239 (404)
....|+|..-+.-|+|.. .... ..+.+.+.+..++=++.+..++..||+. -+.++...+.
T Consensus 255 tl~lN~~DFsRfa~s~~~--~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~ 318 (497)
T COG1953 255 TLALNIPDFTRFAKSQKA--QIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFL 318 (497)
T ss_pred HHhcCCchhhcccCChhh--hhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhc
Confidence 445678888888887621 2222 2244445555556666677788899999 4567777773
No 110
>PRK00701 manganese transport protein MntH; Reviewed
Probab=21.91 E-value=8.3e+02 Score=24.62 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=11.9
Q ss_pred cHHHHHHHHcCCCcce
Q 015596 130 TYMDAVKANLGGKKVI 145 (404)
Q Consensus 130 ~y~~l~~~~~G~~~~~ 145 (404)
+..|+.++-+|++..+
T Consensus 95 ~l~~~ir~~~~~~~~~ 110 (439)
T PRK00701 95 DLAQACRDRYPRPVVW 110 (439)
T ss_pred CHHHHHHHHCCchHHH
Confidence 5888888888876543
No 111
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=21.86 E-value=2.5e+02 Score=22.96 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhhhHhhhHHHHHHHHhChhH-HHHHHHHHH-HHHHHHHHHHHHh
Q 015596 65 WTTSSHIITAVIGSGVLSLAWAIAQLGWVA-GPTVLILFA-LVNLYTANLLSQC 116 (404)
Q Consensus 65 ~~a~~~l~~~~iG~GiL~lP~af~~~G~~~-g~~~l~~~~-~~~~~s~~lL~~~ 116 (404)
+.-....+++.+=.|-+++|..+++.|.+. |...+...+ .+.+.+..+.-.+
T Consensus 66 ~idlA~FlTg~~vvs~falPiVl~ha~lI~~gAc~l~~tg~~iIF~~ii~~f~~ 119 (131)
T KOG2174|consen 66 CIDLAKFLTGAIVVSAFALPIVLAHAGLIGWGACALVLTGNSIIFLVIILFFLI 119 (131)
T ss_pred HHHHHHHHhcchhhhhhhhHHHHHHhhHhhhhhhhhhhcCCchhHHHHHHHHHH
Confidence 333444444455566799999999999997 555555555 4444444444343
No 112
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=21.38 E-value=3.4e+02 Score=20.68 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=21.6
Q ss_pred hhhhHHHHhhHHhHHhhccCC---CcchhHHHHHHHHHHHHHHHHHHHHH
Q 015596 339 GFWPLTVYFPIEMYKAQKKIG---RGTTRWLGLQILNVSCFFITLVAAIG 385 (404)
Q Consensus 339 ~~~~l~fi~P~l~yl~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~ 385 (404)
.+.++..+.-++|-..-+.+. .....|. ++++.|++++++.+.+
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~s~~~~~~wR---alSii~FIlG~vl~lG 62 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNTSNVTDYVWR---ALSVTCFIVGAVLLLG 62 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCCcchhHH---HHHHHHHHHHHHHHHH
Confidence 333444444444444433221 2233443 4566777777776655
Done!