Query 015596
Match_columns 404
No_of_seqs 218 out of 1402
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 15:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.5 1.8E-12 6.1E-17 129.0 19.8 281 58-360 6-380 (445)
2 3gia_A Uncharacterized protein 99.0 1.1E-08 3.9E-13 101.5 20.2 161 58-228 4-249 (444)
3 4djk_A Probable glutamate/gamm 98.8 2.5E-07 8.5E-12 93.4 18.7 60 167-229 204-263 (511)
4 2jln_A MHP1; hydantoin, transp 97.0 0.062 2.1E-06 53.8 20.3 82 58-146 23-105 (501)
5 3dh4_A Sodium/glucose cotransp 88.9 20 0.00067 35.7 19.0 82 59-147 19-101 (530)
6 2xq2_A Sodium/glucose cotransp 74.5 75 0.0026 31.9 18.0 85 55-147 44-130 (593)
7 1rh5_B Preprotein translocase 12.0 2.4E+02 0.0083 19.7 3.7 30 190-225 26-55 (74)
8 2l2t_A Receptor tyrosine-prote 10.8 3.3E+02 0.011 17.0 4.0 27 330-357 12-38 (44)
9 3aa1_C 23MER peptide from plec 9.9 1.2E+02 0.0041 16.2 1.1 12 2-13 13-24 (26)
10 2wwb_B SEC61gamma, protein tra 9.7 2.3E+02 0.0078 19.5 2.9 31 188-224 23-53 (68)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.47 E-value=1.8e-12 Score=129.04 Aligned_cols=281 Identities=10% Similarity=0.044 Sum_probs=170.0
Q ss_pred ccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596 58 LKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (404)
Q Consensus 58 ~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~ 137 (404)
++|+.+.++.++..+.+++|+|++.+|...++.|.. +++.+++.+++.......+.|.....+. .| .+-+.+++
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~-~G----g~y~~~~~ 79 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS-PG----GSYAYARR 79 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-TT----THHHHHHH
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC-CC----CchhhHHh
Confidence 467788999999999999999999999998889974 7888888888888888888888876553 22 34445567
Q ss_pred HcCCCcceeeeeeeeee--------------------------------------------Ee-----------------
Q 015596 138 NLGGKKVIFCGLIQYLN--------------------------------------------LF----------------- 156 (404)
Q Consensus 138 ~~G~~~~~l~~~~~~~~--------------------------------------------l~----------------- 156 (404)
.+|+...++++...++. +.
T Consensus 80 ~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i 159 (445)
T 3l1l_A 80 CFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLAL 159 (445)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 88876543322111100 00
Q ss_pred -------------ecCc-------h----hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHH
Q 015596 157 -------------VTGT-------Q----KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTT 212 (404)
Q Consensus 157 -------------~~~~-------~----~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~ 212 (404)
.+.. . ...++..++....|+|.+...+..+..|+|+|+ |+.+|++..++.+++
T Consensus 160 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~---r~ip~a~~~~~~~~~ 236 (445)
T 3l1l_A 160 IPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAA 236 (445)
T ss_dssp HHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc---ccccHHHHHHHHHHH
Confidence 0000 0 123477889999999999999999999999983 789999999999999
Q ss_pred HHHHHHHhHHHhhcCCCCch----hhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc-cCCCCccc
Q 015596 213 TFYLLCGCMGYAAFGDLAPN----NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-KWPKSDLV 287 (404)
Q Consensus 213 ~~y~~~g~~gy~~fG~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~-~~~~~~~~ 287 (404)
++|++..+......+.+... .+..-+......+...+..++..+....+.--......+.+...-.+ ..|+ +.
T Consensus 237 ~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~--~~ 314 (445)
T 3l1l_A 237 VCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPP--IF 314 (445)
T ss_dssp HHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCG--GG
T ss_pred HHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcH--HH
Confidence 99999998887777654211 11110000001233344555555555555433333333333332221 1231 12
Q ss_pred cccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhc----CChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCC
Q 015596 288 TAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLL----PFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGR 360 (404)
Q Consensus 288 ~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~v----p~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~ 360 (404)
.+.++.+.| ...+.+..++..+ ..+.... ..++.+.++.+ .+..+.|.++.+.+++.+++++
T Consensus 315 ~~~~~~~~P--------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 315 ARVNKAGTP--------VAGLIIVGILMTI-FQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp GCCCTTCCC--------HHHHHHHHHHHHH-HHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred HhcCCCCCC--------HHHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence 221122333 2222222222211 1111112 34677777665 3467889999999988876544
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.05 E-value=1.1e-08 Score=101.46 Aligned_cols=161 Identities=15% Similarity=0.227 Sum_probs=117.4
Q ss_pred ccccccHHHHHHHHHhhhhhHhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596 58 LKRTGNFWTTSSHIITAVIGSGVLSLAW-AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (404)
Q Consensus 58 ~~r~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~ 136 (404)
++|+.+.++..+..+++++|+|++.+|. +....|. ..++.+++.+++.......+.|.....+. .| ..-+.++
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~-~G----g~y~~~~ 77 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS-NA----GPIAFIH 77 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC-TT----THHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC----cHHHhHH
Confidence 4677899999999999999999998765 4666776 57888888888888888899998876654 22 2335666
Q ss_pred HHcCCC--cceeeeeee-----------------ee---------------------------eEe--------------
Q 015596 137 ANLGGK--KVIFCGLIQ-----------------YL---------------------------NLF-------------- 156 (404)
Q Consensus 137 ~~~G~~--~~~l~~~~~-----------------~~---------------------------~l~-------------- 156 (404)
+.+|++ +.++ +... ++ ++.
T Consensus 78 ~~~G~~~~~g~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~ 156 (444)
T 3gia_A 78 KAIGDNIITGAL-SILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVL 156 (444)
T ss_dssp HHHCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHhCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 788885 2211 0000 00 000
Q ss_pred ----------------ec-----C--c-hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHH
Q 015596 157 ----------------VT-----G--T-QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTT 212 (404)
Q Consensus 157 ----------------~~-----~--~-~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~ 212 (404)
.+ + . ....+++.++....|+|.+...+.....|+|+|+ |+.+|++..++.+++
T Consensus 157 ~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~---r~ip~ai~~~~~~~~ 233 (444)
T 3gia_A 157 VKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPK---KNVPRAIFISILIVM 233 (444)
T ss_dssp HHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc---cchhHHHHHHHHHHH
Confidence 00 0 1 1123577888888999999999999999999983 679999999999999
Q ss_pred HHHHHHHhHHHhhcCC
Q 015596 213 TFYLLCGCMGYAAFGD 228 (404)
Q Consensus 213 ~~y~~~g~~gy~~fG~ 228 (404)
++|++..+......+.
T Consensus 234 ~~y~~~~~~~~~~~~~ 249 (444)
T 3gia_A 234 FVYVGVAISAIGNLPI 249 (444)
T ss_dssp HHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHhCCCH
Confidence 9999988776665543
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.77 E-value=2.5e-07 Score=93.43 Aligned_cols=60 Identities=12% Similarity=0.054 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCC
Q 015596 167 LQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL 229 (404)
Q Consensus 167 ~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~ 229 (404)
+.++....|+|.|......+..|+|+|+ |+.+|++..++.+++++|++..+......+++
T Consensus 204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 204 LVVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 3456678899999999999999999994 78999999999999999999998888777765
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.00 E-value=0.062 Score=53.77 Aligned_cols=82 Identities=7% Similarity=0.015 Sum_probs=48.1
Q ss_pred ccccccHHHHHHHHHhhhhhHhhhHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596 58 LKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQ-LGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (404)
Q Consensus 58 ~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~-~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~ 136 (404)
++|+.++++-+..-+...++.+.+.+...+.. .++.-+++.+++..++...-+.+...... +.| .+|.++.+
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~----~~G---l~~~v~~R 95 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAI----RWG---INFTVAAR 95 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHH----HHC---CCHHHHTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHh----hcC---CChhhhhH
Confidence 34555666666555665555555555444333 33455666666665555544444444433 223 46999999
Q ss_pred HHcCCCccee
Q 015596 137 ANLGGKKVIF 146 (404)
Q Consensus 137 ~~~G~~~~~l 146 (404)
..||++|..+
T Consensus 96 ~~FG~~Gs~i 105 (501)
T 2jln_A 96 MPFGIRGSLI 105 (501)
T ss_dssp TTSCTTTTHH
T ss_pred hhcchhHHHH
Confidence 9999998754
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=88.92 E-value=20 Score=35.69 Aligned_cols=82 Identities=12% Similarity=0.205 Sum_probs=49.2
Q ss_pred cccccHHHHHHHHHhhhhhH-hhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596 59 KRTGNFWTTSSHIITAVIGS-GVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (404)
Q Consensus 59 ~r~~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~ 137 (404)
.|+.++|...+.+..+.+++ .++++|-...+.|+......+.....+ ......+..-.++ .+ ..|..|..++
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~-~i~~~~~~p~~~~----~~--~~T~~e~l~~ 91 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITL-IIVGKYFLPIFIE----KG--IYTIPEFVEK 91 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHH-HHHHHHTHHHHHH----TT--CCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH-HHHHHHHHHHHHH----cC--CccHHHHHHH
Confidence 45667888888888888775 456899998889976432221111111 1112222232331 22 4699999999
Q ss_pred HcCCCcceee
Q 015596 138 NLGGKKVIFC 147 (404)
Q Consensus 138 ~~G~~~~~l~ 147 (404)
-||++.+.+.
T Consensus 92 Rfg~~~~~~~ 101 (530)
T 3dh4_A 92 RFNKKLKTIL 101 (530)
T ss_dssp HTCHHHHHHH
T ss_pred HcCcHHHHHH
Confidence 9998766543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=74.51 E-value=75 Score=31.93 Aligned_cols=85 Identities=13% Similarity=0.182 Sum_probs=45.6
Q ss_pred CCCccccccHHHHHHHHHhhhhhHh-hhHHHHHHHHhChhHHHHHHH-HHHHHHHHHHHHHHHhhhcCCCCCCcccccHH
Q 015596 55 DGRLKRTGNFWTTSSHIITAVIGSG-VLSLAWAIAQLGWVAGPTVLI-LFALVNLYTANLLSQCYRSGDPVTGQRNYTYM 132 (404)
Q Consensus 55 ~~~~~r~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~-~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~ 132 (404)
.--..|+.+++...+.+..+.+++. .++.|-...+.|+......+. ..+. ......+..-.+ +.| ..|..
T Consensus 44 y~laGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~--~~~~~~~~p~~~----r~~--~~T~~ 115 (593)
T 2xq2_A 44 YFLAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITL--IIVGKYFLPIFI----EKG--IYTIP 115 (593)
T ss_dssp -------CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHH--HHHHHTHHHHHH----HTT--CCSHH
T ss_pred HhcCCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHHHHHH--HHHHHHHHHHHH----hCC--CCCcH
Confidence 3334566678888888887777654 568999888889753211111 1111 111122222222 222 45899
Q ss_pred HHHHHHcCCCcceee
Q 015596 133 DAVKANLGGKKVIFC 147 (404)
Q Consensus 133 ~l~~~~~G~~~~~l~ 147 (404)
|..+.-||++.+.+.
T Consensus 116 e~l~~Rfg~~~~~~~ 130 (593)
T 2xq2_A 116 EFVEKRFNKKLKTIL 130 (593)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHHccCchHHHH
Confidence 999988987765443
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=11.95 E-value=2.4e+02 Score=19.74 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=16.8
Q ss_pred hcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhh
Q 015596 190 IRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA 225 (404)
Q Consensus 190 m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~ 225 (404)
-++| +++.|.+++..+. +-..++|+.||..
T Consensus 26 ~~KP--dr~EF~~iak~~~----iG~~imG~IGfiI 55 (74)
T 1rh5_B 26 LKKP--TKDEYLAVAKVTA----LGISLLGIIGYII 55 (74)
T ss_dssp EECC--CHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred hcCC--CHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3455 5577877665542 3334556666654
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.81 E-value=3.3e+02 Score=16.97 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=12.1
Q ss_pred HHHHHHhhhhhhhHHHHhhHHhHHhhcc
Q 015596 330 DVVGILGAMGFWPLTVYFPIEMYKAQKK 357 (404)
Q Consensus 330 ~i~~liGa~~~~~l~fi~P~l~yl~~~~ 357 (404)
...+++|++....+. .+-..+|++.++
T Consensus 12 IA~gVVgGv~~v~ii-~~~~~~~~RRRr 38 (44)
T 2l2t_A 12 IAAGVIGGLFILVIV-GLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred EEEeehHHHHHHHHH-HHHHHHHhhhhh
Confidence 344566665543222 233445555443
No 9
>3aa1_C 23MER peptide from pleckstrin homology domain-CON family O member 1; actin capping protein, barbed END regulation; HET: MES; 1.90A {Homo sapiens}
Probab=9.85 E-value=1.2e+02 Score=16.24 Aligned_cols=12 Identities=33% Similarity=0.445 Sum_probs=7.9
Q ss_pred CCCCCCCccccc
Q 015596 2 LPRSRTMPSRIH 13 (404)
Q Consensus 2 ~~~~~~~~~~~~ 13 (404)
||-+|+.|-+=+
T Consensus 13 ip~~rr~ptrgh 24 (26)
T 3aa1_C 13 IQHSRRPPTRGX 24 (26)
T ss_dssp CCSCCCCCCC--
T ss_pred CcccccCCCCCC
Confidence 788888886643
No 10
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=9.69 E-value=2.3e+02 Score=19.52 Aligned_cols=31 Identities=16% Similarity=0.400 Sum_probs=17.7
Q ss_pred HHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 015596 188 DTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYA 224 (404)
Q Consensus 188 ~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~ 224 (404)
+--++| +++.|.+++..+ .+-..++|+.||.
T Consensus 23 k~~~KP--dr~Ef~~iak~~----~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 23 KRCTKP--DRKEFQKIAMAT----AIGFAIMGFIGFF 53 (68)
T ss_dssp HHCCCC--CTHHHHHHHHHS----SHHHHHHHHHHHH
T ss_pred HHhcCC--CHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 344556 457777766553 2334556666666
Done!