Query 015596
Match_columns 404
No_of_seqs 218 out of 1402
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 15:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015596.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015596hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 15.9 83 0.006 19.3 3.6 33 188-226 13-45 (56)
2 d1v54d_ f.23.1.1 (D:) Mitochon 8.2 2.2E+02 0.016 20.8 4.6 39 187-228 65-103 (144)
3 d1mv8a2 c.2.1.6 (A:1-202) GDP- 6.5 54 0.004 25.5 0.2 18 74-91 4-23 (202)
4 d1xmeb2 f.17.2.1 (B:3-36) Bact 5.4 2.3E+02 0.017 14.5 2.4 6 89-94 13-18 (34)
5 d1wdka3 c.2.1.6 (A:311-496) Fa 5.2 81 0.0059 24.1 0.5 19 74-92 8-28 (186)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.2 4.8E+02 0.035 20.6 4.9 29 79-107 15-43 (248)
7 d3cx5c1 f.32.1.1 (C:262-385) M 4.0 5.1E+02 0.037 18.0 4.4 13 325-337 24-37 (124)
8 d1iwga8 f.35.1.1 (A:513-566,A: 3.7 3.7E+02 0.027 20.6 3.7 18 129-146 13-30 (222)
9 d1ppjc1 f.32.1.1 (C:261-379) M 3.7 5.4E+02 0.039 17.7 4.2 13 325-337 24-37 (119)
10 d1bg6a2 c.2.1.6 (A:4-187) N-(1 3.4 1.3E+02 0.0095 22.1 0.4 18 74-91 5-24 (184)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=15.90 E-value=83 Score=19.27 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=17.9
Q ss_pred HHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhc
Q 015596 188 DTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAF 226 (404)
Q Consensus 188 ~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~f 226 (404)
.--++| +++.|+++...+ .+=..++|..||..+
T Consensus 13 k~~~KP--~~~Ef~~ia~v~----~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 13 LVLKKP--TKDEYLAVAKVT----ALGISLLGIIGYIIH 45 (56)
T ss_dssp HSEECC--CHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHhcCC--CHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 334566 446777765543 233445666666543
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.16 E-value=2.2e+02 Score=20.81 Aligned_cols=39 Identities=10% Similarity=-0.028 Sum_probs=19.7
Q ss_pred HHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Q 015596 187 QDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 228 (404)
Q Consensus 187 ~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~ 228 (404)
..||+.|+. ..+.++..++..+.+-..++...-..++++
T Consensus 65 ~ae~~~p~g---ewK~v~g~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 65 FAEMNRSTN---EWKTVVGAAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp HHHHTCCCS---HHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cccccCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 567888753 455555444443433333444444445554
No 3
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.48 E-value=54 Score=25.50 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=12.8
Q ss_pred hhhhHhhhHHHHH--HHHhC
Q 015596 74 AVIGSGVLSLAWA--IAQLG 91 (404)
Q Consensus 74 ~~iG~GiL~lP~a--f~~~G 91 (404)
+++|.|-+++|.| |+..|
T Consensus 4 ~ViGlG~vGl~~a~~la~~g 23 (202)
T d1mv8a2 4 SIFGLGYVGAVCAGCLSARG 23 (202)
T ss_dssp EEECCSTTHHHHHHHHHHTT
T ss_pred EEECCCHhHHHHHHHHHhCC
Confidence 4678888888887 44444
No 4
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=5.37 E-value=2.3e+02 Score=14.47 Aligned_cols=6 Identities=50% Similarity=1.365 Sum_probs=3.1
Q ss_pred HhChhH
Q 015596 89 QLGWVA 94 (404)
Q Consensus 89 ~~G~~~ 94 (404)
.-||+.
T Consensus 13 ekgwla 18 (34)
T d1xmeb2 13 EKGWLA 18 (34)
T ss_dssp HHHHHH
T ss_pred HhhHHH
Confidence 345654
No 5
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}
Probab=5.24 E-value=81 Score=24.13 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=13.2
Q ss_pred hhhhHhhhHHHHH--HHHhCh
Q 015596 74 AVIGSGVLSLAWA--IAQLGW 92 (404)
Q Consensus 74 ~~iG~GiL~lP~a--f~~~G~ 92 (404)
++||+|.++..+| +++.|+
T Consensus 8 aViGaG~mG~~iA~~~a~~G~ 28 (186)
T d1wdka3 8 AVLGAGIMGGGIAYQSASKGT 28 (186)
T ss_dssp EEECCHHHHHHHHHHHHHTTC
T ss_pred EEECcCHHHHHHHHHHHhCCC
Confidence 4688888877654 666664
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.18 E-value=4.8e+02 Score=20.60 Aligned_cols=29 Identities=21% Similarity=-0.023 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHhChhHHHHHHHHHHHHHH
Q 015596 79 GVLSLAWAIAQLGWVAGPTVLILFALVNL 107 (404)
Q Consensus 79 GiL~lP~af~~~G~~~g~~~l~~~~~~~~ 107 (404)
++.+.|.++++.-|+.+++++++.+++.+
T Consensus 15 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 43 (248)
T d2r6gf1 15 VGYLVVLMYAQGEYLFAITTLILSSAGLY 43 (248)
T ss_dssp HHHTHHHHHGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHheEE
Confidence 45567888888888887777666655543
No 7
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.01 E-value=5.1e+02 Score=17.97 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=6.0
Q ss_pred cCC-hHHHHHHHhh
Q 015596 325 LPF-FNDVVGILGA 337 (404)
Q Consensus 325 vp~-~~~i~~liGa 337 (404)
+|| ++-++.+.+|
T Consensus 24 iP~k~~Gvl~~~~s 37 (124)
T d3cx5c1 24 IPDKLLGVITMFAA 37 (124)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CCcchhhhHHHHHH
Confidence 563 4444444443
No 8
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.69 E-value=3.7e+02 Score=20.59 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=11.9
Q ss_pred ccHHHHHHHHcCCCccee
Q 015596 129 YTYMDAVKANLGGKKVIF 146 (404)
Q Consensus 129 ~~y~~l~~~~~G~~~~~l 146 (404)
..|.+-+.+..+|.++++
T Consensus 13 ~~y~~~v~~~~~r~~r~~ 30 (222)
T d1iwga8 13 HHYTDSVGGILRSTGRYL 30 (222)
T ss_dssp THHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 367777777777776643
No 9
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.68 E-value=5.4e+02 Score=17.72 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=6.6
Q ss_pred cCC-hHHHHHHHhh
Q 015596 325 LPF-FNDVVGILGA 337 (404)
Q Consensus 325 vp~-~~~i~~liGa 337 (404)
+|| ++-++.+++|
T Consensus 24 ipnK~gGvl~m~~s 37 (119)
T d1ppjc1 24 IPNKLGGVLALAFS 37 (119)
T ss_dssp CSSHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHH
Confidence 664 5555555444
No 10
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Probab=3.36 E-value=1.3e+02 Score=22.07 Aligned_cols=18 Identities=44% Similarity=0.521 Sum_probs=10.2
Q ss_pred hhhhHhhhHHHHH--HHHhC
Q 015596 74 AVIGSGVLSLAWA--IAQLG 91 (404)
Q Consensus 74 ~~iG~GiL~lP~a--f~~~G 91 (404)
++||+|-.+.++| +++.|
T Consensus 5 aIiGaG~~G~~~A~~l~~~G 24 (184)
T d1bg6a2 5 AVLGLGNGGHAFAAYLALKG 24 (184)
T ss_dssp EEECCSHHHHHHHHHHHHTT
T ss_pred EEECccHHHHHHHHHHHHCC
Confidence 4566666666555 44444
Done!