Query 015598
Match_columns 404
No_of_seqs 118 out of 283
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04177 TAP42: TAP42-like fam 100.0 9E-76 1.9E-80 587.1 16.2 323 10-392 1-340 (340)
2 KOG2830 Protein phosphatase 2A 100.0 1.9E-59 4.1E-64 452.1 23.9 309 1-402 1-324 (324)
3 PF12309 KBP_C: KIF-1 binding 51.1 72 0.0016 32.8 8.4 78 31-113 261-344 (371)
4 TIGR00256 D-tyrosyl-tRNA(Tyr) 37.1 22 0.00047 31.8 1.8 67 41-112 41-117 (145)
5 PF13355 DUF4101: Protein of u 36.9 49 0.0011 28.2 3.9 41 306-350 6-46 (117)
6 KOG2830 Protein phosphatase 2A 20.0 1.6E+02 0.0035 29.7 4.6 31 126-156 120-150 (324)
7 PF08599 Nbs1_C: DNA damage re 18.9 2.6E+02 0.0057 21.5 4.4 12 326-337 37-48 (65)
8 PRK05273 D-tyrosyl-tRNA(Tyr) d 17.6 90 0.002 28.0 2.0 68 40-112 40-117 (147)
9 COG2188 PhnF Transcriptional r 16.7 89 0.0019 29.7 2.0 18 307-324 16-33 (236)
10 PRK15422 septal ring assembly 14.9 3.5E+02 0.0076 21.7 4.5 29 193-221 5-33 (79)
No 1
>PF04177 TAP42: TAP42-like family; InterPro: IPR007304 The TOR signalling pathway activates a cell-growth program in response to nutrients []. TIP41 interacts with TAP42 and negatively regulates the TOR signalling pathway [].; GO: 0009966 regulation of signal transduction; PDB: 3QC1_A 2V0P_A.
Probab=100.00 E-value=9e-76 Score=587.06 Aligned_cols=323 Identities=35% Similarity=0.523 Sum_probs=172.3
Q ss_pred CHHHHHHHHHHHhh------hhccCCCchHHHHHHHHHHHHHHHHhhhhCCCCCCCCCccccccchhhhhHHHHhhhhcc
Q 015598 10 PLPSLFERGRKIHQ------IATESGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGELIE 83 (404)
Q Consensus 10 sL~~lf~~~~~~~~------~~~~s~~~q~~l~~~i~~l~~~~~~v~~l~lFS~NE~leDIsT~~L~yLllpy~lg~L~~ 83 (404)
||++||..|+++|. .+.+|+.||+.|.++|..|+.|+.+|+++||||+||+||||+|++|+||+||||||.|++
T Consensus 1 ~L~~lf~~~~~~~~~le~~~~~~~s~~~q~~v~~~i~~l~~~~~~v~~l~lFS~NE~ledIsT~~LkyLllpy~Lg~L~~ 80 (340)
T PF04177_consen 1 SLSELFDEALKLYDELENSSLPSSSPEYQEKVKSAIADLEKAQKMVSQLSLFSSNEELEDISTSDLKYLLLPYYLGELTL 80 (340)
T ss_dssp -HHHHHHHHHHHHHHCCC-SS-TTSHHHHHHHHHHHHHHHHHHHHHCCCTCCHCSSSCCCS-CCCHGGGGHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCcccccccchhHHHHHHHHHHHHH
Confidence 69999999999996 356788899999999999999999999999999999999999999999999999999999
Q ss_pred c-ccchhHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHhhhc----------CCcchHHHHHHHHHHHHHHHHHHHHHH
Q 015598 84 K-IAQDDRLQILKASQAKLKEFISFCEIMELVPEEELEAVAQA----------KPTAFTDQRARKIARFKRQRAAESKLQ 152 (404)
Q Consensus 84 k-~~~~~R~~~L~~A~~~~~~FL~~l~~Y~ll~~~~~~~~~~~----------~~~~~a~~R~~KI~rfK~eKelk~kL~ 152 (404)
+ ....+|+.+|+.|+.||..||++|++|+||++++...+... ...+|+.+|+.||+|||++|+|+++|.
T Consensus 81 k~~~~~~R~~~L~~A~~~~~~FL~~~~~y~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~KI~r~K~eKel~~~L~ 160 (340)
T PF04177_consen 81 KLSNPEDRLEILKRAKEYYIEFLKRCEDYGLLDKDDPKLLESYQDNPSSSSSSSLSDPAARRNEKIARFKREKELEQKLK 160 (340)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHCCHHHTT-S-HHHHHHHHT-HHS---SSCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred hhcCchhHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 56788999999999999999999999999999987765432 356899999999999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhCCCcc
Q 015598 153 EIKERKERRGRSTRAAAPSAPVEAGEEDVLDDDGEEEREAWLTTISLAVCKALDLLEMLKKEEDMLSAVKERQLKGGEEE 232 (404)
Q Consensus 153 ~L~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~DEE~~Re~~l~~L~l~~~~a~~~L~si~~El~iL~~~~~~~~~~~~~~ 232 (404)
.|++.... +.+++|||++|++||++|++|+++|+++|+||.+|++||++++++........
T Consensus 161 ~l~~~~~~-------------------~~~~~DEE~~Re~~l~~L~~~~~~s~~~l~si~~El~mL~~~~~~~~~~~~~~ 221 (340)
T PF04177_consen 161 ELEKRRES-------------------DDDDDDEEIEREYYLLLLKLWVLKSLEELESIEQELEMLEMRPKMKEAPESEP 221 (340)
T ss_dssp HHHHHHHT-------------------TTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----------
T ss_pred HHHHhhcc-------------------cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcc
Confidence 99986531 12356999999999999999999999999999999999999988765332211
Q ss_pred hhhHHhHhhhhhhhhhhhhhHhhhhcCCCCCCccccchhhhhhhhcccccccccccCCCccccCccccCCCCchHHHHHH
Q 015598 233 FSEVVLDERSKKAESWHRDAAIRAQYTKPAQPITCATFAQDVLEGRAKVSQAHEHKHQPMIFGPASLVGGGLTSERERMA 312 (404)
Q Consensus 233 ~~~~~~d~r~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~~~p~~~~~~~it~~R~~lq 312 (404)
......+.....+.+|+.+.+ .+.|. ....++| ++|||| ++.|+++|
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~~----~~~pl----------------------~~~~~~~--l~pfti-----~~~R~~~~ 268 (340)
T PF04177_consen 222 SQDERDDEPDADGYSDRLESP----KPGPL----------------------LSKPGKP--LKPFTI-----TSTREQLQ 268 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc----CCCCC----------------------CCCCCCC--CCCccc-----HHHHHHHH
Confidence 000000000011233332220 00010 1112345 388875 45699999
Q ss_pred hhcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCcHHHHHHHHhhhccccCCC
Q 015598 313 AQVFQPMHRLPTMSIEEAGLKEMEMMNKWQEMNVKLMEEANSAWYKDNRKLGTSENDNEDDDDDAVQKARAFDDWKDDNP 392 (404)
Q Consensus 313 ~~VFgpg~~LPTMTveE~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~dee~~~k~R~WDd~KD~np 392 (404)
++||||||+||||||||||++||+ +|.++.++..........+.+..+++++++|++++|+|+||||||+||
T Consensus 269 ~~VFgpg~~LPTMTveE~~e~E~~--------~g~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~e~~k~R~WDdwKD~np 340 (340)
T PF04177_consen 269 KKVFGPGHPLPTMTVEEFLEQEMR--------EGNIPQGGGAKAEAKEEEEEEDDEDDDEEDDEETLKAREWDDWKDDNP 340 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCCCCCcCcHHHHHHHHHH--------hccCccccccccccccccccchhhhhhhhhcHHHHHHHhhhcccccCC
Confidence 999999999999999999999983 456666553221000011112233355667888999999999999998
No 2
>KOG2830 consensus Protein phosphatase 2A-associated protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-59 Score=452.12 Aligned_cols=309 Identities=35% Similarity=0.500 Sum_probs=244.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHHHHHHhhhhCCCCCCCCCccccccchhhhhHHHHhhh
Q 015598 1 MGEVSREELPLPSLFERGRKIHQIATESGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGE 80 (404)
Q Consensus 1 ~~~~~~~~~sL~~lf~~~~~~~~~~~~s~~~q~~l~~~i~~l~~~~~~v~~l~lFS~NE~leDIsT~~L~yLllpy~lg~ 80 (404)
|+.+.+...+|..||+..++.+.....+..++..+...|..+..|+.+|++|+|||+||+||||+|++||||+||||||.
T Consensus 1 Ma~~~e~~~~~~~L~d~~~~~~~~~~E~~~~~~~~~~~i~q~~~~t~m~~ql~lFSsNE~iedIsT~sLkyLlVpyflg~ 80 (324)
T KOG2830|consen 1 MASLDELELPLQKLYDLSLKGKQLRDESEVATEPVLKRIKQLKVATEMVNQLALFSSNETIEDISTNSLKYLLVPYFLGK 80 (324)
T ss_pred CcchhhhccchhhhHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhccccccchhhhHHHHHH
Confidence 78888888898888888887766666788899999999999999999999999999999999999999999999999999
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHhcCCCChHHH---------HHh----hhcCCcchHHHHHHHHHHHHHHHHH
Q 015598 81 LIEKIAQDDRLQILKASQAKLKEFISFCEIMELVPEEEL---------EAV----AQAKPTAFTDQRARKIARFKRQRAA 147 (404)
Q Consensus 81 L~~k~~~~~R~~~L~~A~~~~~~FL~~l~~Y~ll~~~~~---------~~~----~~~~~~~~a~~R~~KI~rfK~eKel 147 (404)
|+.++...+|+.+|+.|..||..||.+|..|+|++.... ... .......++..|..||+|||++|++
T Consensus 81 Lt~k~~~~~~~~~lk~a~~~f~~~ls~c~~y~L~~~~~~k~~~~~~~~~~~~s~~~~~~l~~~~~~r~~Kier~~r~kEl 160 (324)
T KOG2830|consen 81 LTEKQINEDRLDHLKLAEEHFINFLSRCQDYHLAPFELPKTKNNAADRALKISRMAEKSLVEAALKRQKKIERYKRKKEL 160 (324)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHHHHHHhccCccchhhccccCchhHHHHHHhhhccchhHHHHHHHHhHHHHHHHHHHH
Confidence 999987778899999999999999999999999654321 111 2234567899999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCcccCCCCCCCCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 015598 148 ESKLQEIKERKERRGRSTRAAAPSAPVEAGEEDVLDDDGEEEREAWLTTISL-AVCKALDLLEMLKKEEDMLSAVKERQL 226 (404)
Q Consensus 148 k~kL~~L~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~DEE~~Re~~l~~L~l-~~~~a~~~L~si~~El~iL~~~~~~~~ 226 (404)
+..|..++.. ++++ .+||+.+|++|+.+++. |+-.+++.+++|.+|+.+|+....
T Consensus 161 ~~~l~~~~~a----------------ve~~-----~~Dde~lrelyl~~l~~~~~d~~lee~E~i~~e~r~lkE~~s--- 216 (324)
T KOG2830|consen 161 KHRLTRMQSA----------------VEDG-----QDDDEHLRELYLLQLQRGWIDISLEEEESIDQEERLLKEGES--- 216 (324)
T ss_pred HHHHHHHHHh----------------hhcC-----CCchHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHhcccc---
Confidence 9999998862 5544 34777799999999999 998999999999999999982110
Q ss_pred hCCCcchhhHHhHhhhhhhhhhhhhhHhhhhcCCCCCCccccchhhhhhhhcccccccccccCCCccccCccccCCCCch
Q 015598 227 KGGEEEFSEVVLDERSKKAESWHRDAAIRAQYTKPAQPITCATFAQDVLEGRAKVSQAHEHKHQPMIFGPASLVGGGLTS 306 (404)
Q Consensus 227 ~~~~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~~~p~~~~~~~it~ 306 (404)
|+ +.. +.++. ++ ..+| ...||++
T Consensus 217 ---------------------~r-~~s-------t~~t~------------~~--------e~~p-~~~~fi~------- 239 (324)
T KOG2830|consen 217 ---------------------SR-DPS-------TSNTS------------RG--------ETRP-PLFPFII------- 239 (324)
T ss_pred ---------------------cc-ccc-------cCccc------------cc--------cCCC-CcchHHH-------
Confidence 00 000 00000 00 0144 4467763
Q ss_pred HHHHHHhhcCCCCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCCCCcHHHHHHHHhhh
Q 015598 307 ERERMAAQVFQPMHR-LPTMSIEEAGLKEMEMMNKWQEMNVKLMEEANSAWYKDNRKLGTSENDNEDDDDDAVQKARAFD 385 (404)
Q Consensus 307 ~R~~lq~~VFgpg~~-LPTMTveE~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~dee~~~k~R~WD 385 (404)
.|++.|++|||.||+ |||||||||++++|+. |.++.++..+...+ .+++++++++|+++++|+|+||
T Consensus 240 ~r~~~q~kVfG~Gyp~lPtMsvdE~~~~~~~~--------g~a~~~~~~~~~a~----~ed~E~~e~ddd~~~~kar~wD 307 (324)
T KOG2830|consen 240 TRNETQKKVFGLGYPGLPTMTVDEFLDQEFEE--------GIAKAEAEESRPAA----KEDQEEEEEDDDEATMKARRWD 307 (324)
T ss_pred HHHHHhhhhhhcCCCCCccccHHHHHHHHHHh--------hhcccCcccccccc----cchhhhhcccChHHHHHHhhhc
Confidence 499999999999995 8999999999988842 43333322222111 1122225678899999999999
Q ss_pred ccccCCCCCCCCCCCCC
Q 015598 386 DWKDDNPRGAGNKKLTP 402 (404)
Q Consensus 386 d~KD~npRG~GN~~~~~ 402 (404)
+|||+|||||||||+++
T Consensus 308 e~Kd~~prG~GN~~n~~ 324 (324)
T KOG2830|consen 308 EFKDDHPRGSGNTMNTG 324 (324)
T ss_pred cccccCcccccccccCC
Confidence 99999999999999986
No 3
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=51.10 E-value=72 Score=32.81 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHHHHHHhhhhCCCCCC--CCCccccccch-hhhhHHHHhhhhccccc---chhHHHHHHHHHHHHHHH
Q 015598 31 DPDAVRKGCEVLEKCEDMVGKLGLFSSN--ETKDDISTANL-KYILVPYFLGELIEKIA---QDDRLQILKASQAKLKEF 104 (404)
Q Consensus 31 ~q~~l~~~i~~l~~~~~~v~~l~lFS~N--E~leDIsT~~L-~yLllpy~lg~L~~k~~---~~~R~~~L~~A~~~~~~F 104 (404)
.-..+.++|..|+....... +++ +.-+.+..+.+ +||..=|++|.|+.|+. +..++++|..|-.+|..+
T Consensus 261 in~l~~~ai~~y~~fl~s~~-----~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~v 335 (371)
T PF12309_consen 261 INQLCSKAIKYYQKFLDSYK-----SPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWV 335 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----CCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHH
Confidence 44556677888865554433 444 22222555555 47777889999999983 457999999999999999
Q ss_pred HHHHHhcCC
Q 015598 105 ISFCEIMEL 113 (404)
Q Consensus 105 L~~l~~Y~l 113 (404)
++.|+.+..
T Consensus 336 v~y~~~~~~ 344 (371)
T PF12309_consen 336 VDYCEKHPE 344 (371)
T ss_pred HHHHHhChh
Confidence 999999986
No 4
>TIGR00256 D-tyrosyl-tRNA(Tyr) deacylase. This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterization with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader.
Probab=37.08 E-value=22 Score=31.78 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=44.9
Q ss_pred HHHHHHHHhhhhCCCCCCC-----CCccccccchhhhhHHHHhhhhcccccchhHHHHH-----HHHHHHHHHHHHHHHh
Q 015598 41 VLEKCEDMVGKLGLFSSNE-----TKDDISTANLKYILVPYFLGELIEKIAQDDRLQIL-----KASQAKLKEFISFCEI 110 (404)
Q Consensus 41 ~l~~~~~~v~~l~lFS~NE-----~leDIsT~~L~yLllpy~lg~L~~k~~~~~R~~~L-----~~A~~~~~~FL~~l~~ 110 (404)
....+..-|-.|-||++.+ ++.|+ .-..|+||=| .|+......+|..+- +.|+.+|..|++.|+.
T Consensus 41 ~~~~~~~Kil~lRif~de~gk~~~Sv~d~---~geiL~VSQF--TL~a~~~KG~rPsF~~a~~~~~A~~ly~~fv~~l~~ 115 (145)
T TIGR00256 41 KADKLAEKVLNYRIFSDSEGKMNLNVQQA---GGEILSVSQF--TLAADTKKGMRPSFSKGASPDRAEELYEYFVELCRE 115 (145)
T ss_pred HHHHHHHHHhheEeccCCCCCccCCHHHC---CCCEEEEECC--cccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 3456677778899999844 44444 3345667655 666555333444433 6889999999999998
Q ss_pred cC
Q 015598 111 ME 112 (404)
Q Consensus 111 Y~ 112 (404)
++
T Consensus 116 ~~ 117 (145)
T TIGR00256 116 KG 117 (145)
T ss_pred cC
Confidence 76
No 5
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=36.94 E-value=49 Score=28.18 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=26.8
Q ss_pred hHHHHHHhhcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 015598 306 SERERMAAQVFQPMHRLPTMSIEEAGLKEMEMMNKWQEMNVKLME 350 (404)
Q Consensus 306 ~~R~~lq~~VFgpg~~LPTMTveE~~~~E~~~~~~~~~~~~~~~~ 350 (404)
..-...|+.+|||.|. +=.+++++...| +..|+.+......
T Consensus 6 ~~Wl~~Ka~alg~~~~--~~~L~~vl~g~l--l~~w~~~a~~~~~ 46 (117)
T PF13355_consen 6 QRWLSAKAQALGPPHD--IDSLSEVLTGPL--LSQWQDRAQWLKA 46 (117)
T ss_pred HHHHHHHHHHhCCCcc--hhHHHHHhhHHH--HHHHHHHHHHHHH
Confidence 3467789999999996 234555555555 6677666554444
No 6
>KOG2830 consensus Protein phosphatase 2A-associated protein [Signal transduction mechanisms]
Probab=19.98 E-value=1.6e+02 Score=29.72 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=25.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015598 126 KPTAFTDQRARKIARFKRQRAAESKLQEIKE 156 (404)
Q Consensus 126 ~~~~~a~~R~~KI~rfK~eKelk~kL~~L~~ 156 (404)
....++..|..||++|+...-+...+....+
T Consensus 120 k~~~~~~~~~~~~s~~~~~~l~~~~~~r~~K 150 (324)
T KOG2830|consen 120 KTKNNAADRALKISRMAEKSLVEAALKRQKK 150 (324)
T ss_pred cccCchhHHHHHHhhhccchhHHHHHHHHhH
Confidence 3458999999999999999888877766554
No 7
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=18.86 E-value=2.6e+02 Score=21.46 Aligned_cols=12 Identities=42% Similarity=0.307 Sum_probs=9.8
Q ss_pred cHHHHHHHHHHH
Q 015598 326 SIEEAGLKEMEM 337 (404)
Q Consensus 326 TveE~~~~E~~~ 337 (404)
.+|||+.+||+.
T Consensus 37 eleeWl~~e~E~ 48 (65)
T PF08599_consen 37 ELEEWLRQEMEE 48 (65)
T ss_pred cHHHHHHHHHHH
Confidence 789999988853
No 8
>PRK05273 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=17.56 E-value=90 Score=27.96 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhhCCCCC-----CCCCccccccchhhhhHHHHhhhhcccccchhHHHH-----HHHHHHHHHHHHHHHH
Q 015598 40 EVLEKCEDMVGKLGLFSS-----NETKDDISTANLKYILVPYFLGELIEKIAQDDRLQI-----LKASQAKLKEFISFCE 109 (404)
Q Consensus 40 ~~l~~~~~~v~~l~lFS~-----NE~leDIsT~~L~yLllpy~lg~L~~k~~~~~R~~~-----L~~A~~~~~~FL~~l~ 109 (404)
+....+.+-|-.+-||.+ |-++.|+ .-..|+||= -.|+.++...+|..+ =..|+..|..|++.|+
T Consensus 40 ~~~~~~~~Kil~lRif~d~~gk~~~Sv~d~---~geiL~VsQ--FTL~a~~~KG~rP~F~~a~~~~~A~~ly~~f~~~l~ 114 (147)
T PRK05273 40 EDADYLAEKILNLRIFEDEEGKMNLSVQDV---GGEILVVSQ--FTLYADTRKGRRPSFSAAAPPEEAEPLYDYFVEALR 114 (147)
T ss_pred HHHHHHHHHHhheEcccCCCCCcccCHHHC---CCCEEEEEc--ccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHH
Confidence 345556677778999988 3455555 334566664 345544422233322 3689999999999999
Q ss_pred hcC
Q 015598 110 IME 112 (404)
Q Consensus 110 ~Y~ 112 (404)
..+
T Consensus 115 ~~~ 117 (147)
T PRK05273 115 AQG 117 (147)
T ss_pred HcC
Confidence 886
No 9
>COG2188 PhnF Transcriptional regulators [Transcription]
Probab=16.70 E-value=89 Score=29.66 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=17.0
Q ss_pred HHHHHHhhcCCCCCCCCc
Q 015598 307 ERERMAAQVFQPMHRLPT 324 (404)
Q Consensus 307 ~R~~lq~~VFgpg~~LPT 324 (404)
-++++++++|.||+.||+
T Consensus 16 i~~~I~~G~~~~G~~LPs 33 (236)
T COG2188 16 IRQRIESGELPPGDKLPS 33 (236)
T ss_pred HHHHHHhCCCCCCCCCCC
Confidence 499999999999999998
No 10
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=14.88 E-value=3.5e+02 Score=21.71 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015598 193 WLTTISLAVCKALDLLEMLKKEEDMLSAV 221 (404)
Q Consensus 193 ~l~~L~l~~~~a~~~L~si~~El~iL~~~ 221 (404)
.+.+|.--|-.|++.+..+++|++=|+.-
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKek 33 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEK 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999853
Done!