Query 015598
Match_columns 404
No_of_seqs 118 out of 283
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 15:24:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v0p_A TAP42, type 2A phosphat 100.0 5E-49 1.7E-53 373.5 21.1 196 9-222 2-233 (234)
2 3qc1_A Immunoglobulin-binding 100.0 4.9E-49 1.7E-53 374.3 18.9 194 7-221 29-242 (243)
3 3ka5_A Ribosome-associated pro 22.5 56 0.0019 24.1 2.7 16 320-336 8-23 (65)
4 3k2t_A LMO2511 protein; lister 21.7 51 0.0017 23.6 2.2 15 320-335 8-22 (57)
5 1vcs_A Vesicle transport throu 19.2 3E+02 0.01 21.5 6.7 60 87-154 33-93 (102)
6 2ld7_B Paired amphipathic heli 18.1 89 0.003 23.5 3.0 24 97-120 24-49 (75)
7 3lyv_A Ribosome-associated fac 14.8 71 0.0024 23.6 1.7 12 320-331 9-20 (66)
8 2dbo_A D-tyrosyl-tRNA(Tyr) dea 14.6 83 0.0028 27.0 2.3 70 42-113 42-118 (148)
9 3onj_A T-snare VTI1; helix, HA 13.8 4E+02 0.014 20.6 6.1 49 87-144 29-80 (97)
10 1jke_A O145, D-Tyr-trnaTyr dea 12.0 67 0.0023 27.5 0.9 67 42-113 42-118 (145)
No 1
>2v0p_A TAP42, type 2A phosphatase-associated protein 42; phosphorylation, signal transduction inhibitor, hydrolase in; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-49 Score=373.47 Aligned_cols=196 Identities=24% Similarity=0.296 Sum_probs=166.6
Q ss_pred CCHHHHHHHHHHHhh-h------hccCCCchHHHHHHHH-HHHHHHHHhhhhCCCCCCCCCccccccchhhhhHHHHhhh
Q 015598 9 LPLPSLFERGRKIHQ-I------ATESGCDPDAVRKGCE-VLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGE 80 (404)
Q Consensus 9 ~sL~~lf~~~~~~~~-~------~~~s~~~q~~l~~~i~-~l~~~~~~v~~l~lFS~NE~leDIsT~~L~yLllpy~lg~ 80 (404)
.||+++|..|+++|. . +.+|+.||+.|+++|. .|+.|+.+|+++||||+||++|||+|++|+||+||||||.
T Consensus 2 ~~L~~lF~~a~~~~~~~le~~~~~~~s~~~Q~~v~~~i~~~le~~~~~v~~l~LFS~NE~leDIsT~~L~yLlvpy~Lg~ 81 (234)
T 2v0p_A 2 ASVTEQFNDIISLYSTKLEHTSLRQDSPEYQGLLLSTIKKLLNLKTAIFDRLALFSTNETIDDVSTASIKFLAVDYYLGL 81 (234)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCSSCTTCHHHHHHHHHHHHHHHHHHHHHHTTSCC-----CGGGSCGGGGGGGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCcccccccchHHHhHHHHHHH
Confidence 589999999999887 3 4577889999999999 9999999999999999999999999999999999999999
Q ss_pred hcccccc---------hhHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHhhhc-------------------CCcchHH
Q 015598 81 LIEKIAQ---------DDRLQILKASQAKLKEFISFCEIMELVPEEELEAVAQA-------------------KPTAFTD 132 (404)
Q Consensus 81 L~~k~~~---------~~R~~~L~~A~~~~~~FL~~l~~Y~ll~~~~~~~~~~~-------------------~~~~~a~ 132 (404)
|++++.. .+|+.+|+.|+.||..||++|++|||+++++...+... .+.+|+.
T Consensus 82 L~~k~~~~~~~~~~~~~~R~~~L~~A~~~~~~FL~~l~~y~ll~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~ 161 (234)
T 2v0p_A 82 LISRRQSNDSDVAQRQSMKLIYLKKSVESFINFLTLLQDYKLLDPLVGEKLGNFKDRYNPQLSELYAQPKNNKDLSGAQL 161 (234)
T ss_dssp HHTTCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHTCSSTTSCCHHHHSCCCSSTTCHHHHHH
T ss_pred HHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhhccccchhhhhccccccccccccHHH
Confidence 9999865 78999999999999999999999999999887655331 1358999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015598 133 QRARKIARFKRQRAAESKLQEIKERKERRGRSTRAAAPSAPVEAGEEDVLDDDGEEEREAWLTTISLAVCKALDLLEMLK 212 (404)
Q Consensus 133 ~R~~KI~rfK~eKelk~kL~~L~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~DEE~~Re~~l~~L~l~~~~a~~~L~si~ 212 (404)
+|+.||+|||++|+|+++|+.|+.+ ++++.+ +++|||.+|++||++|++|+++|+++|+||.
T Consensus 162 ~R~~KI~rfK~eKel~~kL~~L~~~----------------~~~~~~--D~~deE~~Re~~l~~L~~~~~~s~~~Lesi~ 223 (234)
T 2v0p_A 162 KRKEKIELFQRNKEISTKLHCLELE----------------LKNNDE--DHDHDELLRELYLMRLHHFSLDTINNIEQNL 223 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------C------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------Hhcccc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999874 223322 3457899999999999999999999999999
Q ss_pred HHHHHHHhhH
Q 015598 213 KEEDMLSAVK 222 (404)
Q Consensus 213 ~El~iL~~~~ 222 (404)
+|++||++++
T Consensus 224 ~ElemL~~~~ 233 (234)
T 2v0p_A 224 FECEMLSNFL 233 (234)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcc
Confidence 9999999874
No 2
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=100.00 E-value=4.9e-49 Score=374.33 Aligned_cols=194 Identities=30% Similarity=0.454 Sum_probs=166.2
Q ss_pred CCCCHHHHHHHHHHHhhh------hccCCCchHHHHHHHHHHHHHHHHhhhhCCCCCCCCCccccccchhhhhHHHHhhh
Q 015598 7 EELPLPSLFERGRKIHQI------ATESGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGE 80 (404)
Q Consensus 7 ~~~sL~~lf~~~~~~~~~------~~~s~~~q~~l~~~i~~l~~~~~~v~~l~lFS~NE~leDIsT~~L~yLllpy~lg~ 80 (404)
.+.+|+++|..|+++|.. |++|+.||++|+++|..|+.|+.+|++++|||+||+||||+|++|+||+||||+|.
T Consensus 29 ~~~~L~~lF~~a~~~~~~le~~~~~~~S~~~Q~~v~~~i~~le~~~~~v~~l~LFS~NE~leDIsT~~LkyLlvpy~Lg~ 108 (243)
T 3qc1_A 29 LLPRLPELFETSKKLLEDVEVATEPTGSRTIQDKVSKGLELLEKAAGMLSQLDLFSRNEDLEEIASTDLKYLMVPALQGA 108 (243)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSSCSTTSCTTTGGGGGHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccccccccchHhhHHHHHHH
Confidence 456999999999998863 56888899999999999999999999999999999999999999999999999999
Q ss_pred hcccccch-hHHHHHHHHHHHHHHHHHHHHhcCCCChH----HHHHhhh---------cCCcchHHHHHHHHHHHHHHHH
Q 015598 81 LIEKIAQD-DRLQILKASQAKLKEFISFCEIMELVPEE----ELEAVAQ---------AKPTAFTDQRARKIARFKRQRA 146 (404)
Q Consensus 81 L~~k~~~~-~R~~~L~~A~~~~~~FL~~l~~Y~ll~~~----~~~~~~~---------~~~~~~a~~R~~KI~rfK~eKe 146 (404)
|++|+... .|+.+|+.|+.||.+||++|++|||++++ ....... ..+.+|+.+|+.||+|||++||
T Consensus 109 L~~k~~~~~~Rl~~L~~A~~~~~~FL~~l~~Y~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~rR~~KI~rfK~eKe 188 (243)
T 3qc1_A 109 LTMKQVNPSKRLDHLQRAREHFVHFLTQCHCYHVAEFQLPQTKTNSAENNTASSSMAYPNLVAMASQRQAKIERYKQKKE 188 (243)
T ss_dssp HHTTCCCGGGHHHHHHHHHHHHHHHHTTCCCCC-----------------------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcccchhhhcccccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 99998655 59999999999999999999999999652 1111111 0134899999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015598 147 AESKLQEIKERKERRGRSTRAAAPSAPVEAGEEDVLDDDGEEEREAWLTTISLAVCKALDLLEMLKKEEDMLSAV 221 (404)
Q Consensus 147 lk~kL~~L~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~DEE~~Re~~l~~L~l~~~~a~~~L~si~~El~iL~~~ 221 (404)
|+++|+.|++..+ . +++|||.+|++||++|++|+++|+++|+||.+|++||+++
T Consensus 189 Le~kL~~L~~~~e----------------~-----~~~DeE~~Re~yL~~L~l~~~~s~~~Lesi~~EleiL~~r 242 (243)
T 3qc1_A 189 VEHRLSALKSAVE----------------S-----GQADDERVREYHLLHLRRWIAVSLEELESIDQEIKILKEK 242 (243)
T ss_dssp HHHHHHHHHHHHH----------------H-----TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHh----------------c-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999988543 2 2358999999999999999999999999999999999865
No 3
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=22.45 E-value=56 Score=24.10 Aligned_cols=16 Identities=50% Similarity=0.441 Sum_probs=11.8
Q ss_pred CCCCcccHHHHHHHHHH
Q 015598 320 HRLPTMSIEEAGLKEME 336 (404)
Q Consensus 320 ~~LPTMTveE~~~~E~~ 336 (404)
+.+|+|||||.. .+|+
T Consensus 8 ~~~kpMsveEAv-~qme 23 (65)
T 3ka5_A 8 FAIKPMSEEEAV-LEME 23 (65)
T ss_dssp SCCSCBCHHHHH-HHHH
T ss_pred ecCCCCCHHHHH-HHHH
Confidence 378999999983 3443
No 4
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=21.70 E-value=51 Score=23.62 Aligned_cols=15 Identities=40% Similarity=0.366 Sum_probs=9.3
Q ss_pred CCCCcccHHHHHHHHH
Q 015598 320 HRLPTMSIEEAGLKEM 335 (404)
Q Consensus 320 ~~LPTMTveE~~~~E~ 335 (404)
+.+|+|||||.. .+|
T Consensus 8 ~~~kpmsveEAv-~qm 22 (57)
T 3k2t_A 8 FSLKPMDSEEAV-LQM 22 (57)
T ss_dssp ---CCBCHHHHH-HHH
T ss_pred ccCCCCCHHHHH-HHH
Confidence 379999999983 344
No 5
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=19.21 E-value=3e+02 Score=21.53 Aligned_cols=60 Identities=18% Similarity=0.339 Sum_probs=36.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHhhhcCCcchHHHHHHHHHHHHHH-HHHHHHHHHH
Q 015598 87 QDDRLQILKASQAKLKEFISFCEIMELVPEEELEAVAQAKPTAFTDQRARKIARFKRQ-RAAESKLQEI 154 (404)
Q Consensus 87 ~~~R~~~L~~A~~~~~~FL~~l~~Y~ll~~~~~~~~~~~~~~~~a~~R~~KI~rfK~e-Kelk~kL~~L 154 (404)
.+.|...|..+...+.+=-..+..+++ + .+..+.+.-..=+.||..||.+ ..|+..+..+
T Consensus 33 geerk~~i~~ie~~l~EA~ell~qMel------E--~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 33 PDEKKQMVANVEKQLEEARELLEQMDL------E--VREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHH------H--HTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH------H--HHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999998888888888777664 0 0111111112226799999886 3344444443
No 6
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=18.08 E-value=89 Score=23.48 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhc--CCCChHHHH
Q 015598 97 SQAKLKEFISFCEIM--ELVPEEELE 120 (404)
Q Consensus 97 A~~~~~~FL~~l~~Y--~ll~~~~~~ 120 (404)
.+.-|.+||+.|..| ++|+..++-
T Consensus 24 ~~~~Y~eFLk~lnlf~q~~Id~~eLv 49 (75)
T 2ld7_B 24 SAEAYENFLRCLVIFNQEVISRAELV 49 (75)
T ss_dssp SHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred CHHHHHHHHHHHHHhhhcCcCHHHHH
Confidence 357799999999999 889987754
No 7
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=14.85 E-value=71 Score=23.60 Aligned_cols=12 Identities=42% Similarity=0.495 Sum_probs=10.2
Q ss_pred CCCCcccHHHHH
Q 015598 320 HRLPTMSIEEAG 331 (404)
Q Consensus 320 ~~LPTMTveE~~ 331 (404)
+.+|+|||||..
T Consensus 9 ~~~kpMsveEAv 20 (66)
T 3lyv_A 9 VTLKPMDVEEAR 20 (66)
T ss_dssp CCCCEECHHHHH
T ss_pred ccCCCCCHHHHH
Confidence 379999999983
No 8
>2dbo_A D-tyrosyl-tRNA(Tyr) deacylase; D-amino acid, D-tyrosine, structural genomi NPPSFA, national project on protein structural and function analyses; 2.76A {Aquifex aeolicus}
Probab=14.64 E-value=83 Score=26.97 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=40.6
Q ss_pred HHHHHHHhhhhCCCCCCCCCccccccch--hhhhHHHHhhhhcccccchhHHHH-----HHHHHHHHHHHHHHHHhcCC
Q 015598 42 LEKCEDMVGKLGLFSSNETKDDISTANL--KYILVPYFLGELIEKIAQDDRLQI-----LKASQAKLKEFISFCEIMEL 113 (404)
Q Consensus 42 l~~~~~~v~~l~lFS~NE~leDIsT~~L--~yLllpy~lg~L~~k~~~~~R~~~-----L~~A~~~~~~FL~~l~~Y~l 113 (404)
...+.+-|-.|-||++.+.-=..|-.++ ..|+|+= -.|+......+|..+ =..|+.+|..|+..|+..++
T Consensus 42 ~~~l~~Kil~lRif~De~gkmn~Sv~d~~g~iL~VSQ--FTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~g~ 118 (148)
T 2dbo_A 42 IEKLVNKILNLRIFEDERGKFQYSVLDIKGEILVVSQ--FTLYANVKKGRRPSFEEAEEPKRAKELYEKFVDKIKESGL 118 (148)
T ss_dssp HHHHHHHHHHCCCBCCSSCSSCBCTTTTTCEEEEEEC--GGGGCBCSSSSSCBCTTBCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhcEEeccCCCCCcccCHHHcCCCEEEEEe--eecccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 3445667778999997433222232222 3455553 344443322222222 26789999999999998764
No 9
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=13.81 E-value=4e+02 Score=20.59 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHhhhcCCcchHHHH---HHHHHHHHHH
Q 015598 87 QDDRLQILKASQAKLKEFISFCEIMELVPEEELEAVAQAKPTAFTDQR---ARKIARFKRQ 144 (404)
Q Consensus 87 ~~~R~~~L~~A~~~~~~FL~~l~~Y~ll~~~~~~~~~~~~~~~~a~~R---~~KI~rfK~e 144 (404)
.+.|...|+.+...+.+=...+...++ +.-. ...|+..| +.||..||.+
T Consensus 29 ge~Rk~~i~~ie~~ldEA~ell~qMel------E~~~---~~~p~~~R~~~~~klr~Yk~d 80 (97)
T 3onj_A 29 LSQRNTTLKHVEQQQDELFDLLDQMDV------EVNN---SIGDASERATYKAKLREWKKT 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH---HCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHh---CCCCHHHHHHHHHHHHHHHHH
Confidence 457999999999888888888877765 1111 11133334 6888888875
No 10
>1jke_A O145, D-Tyr-trnaTyr deacylase, ORF_O145; beta-alpha-barrel, hydrolase; 1.55A {Escherichia coli} SCOP: c.110.1.1
Probab=11.95 E-value=67 Score=27.46 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=40.4
Q ss_pred HHHHHHHhhhhCCCCCCC-----CCccccccchhhhhHHHHhhhhcccccchhHHHH-----HHHHHHHHHHHHHHHHhc
Q 015598 42 LEKCEDMVGKLGLFSSNE-----TKDDISTANLKYILVPYFLGELIEKIAQDDRLQI-----LKASQAKLKEFISFCEIM 111 (404)
Q Consensus 42 l~~~~~~v~~l~lFS~NE-----~leDIsT~~L~yLllpy~lg~L~~k~~~~~R~~~-----L~~A~~~~~~FL~~l~~Y 111 (404)
...+.+-|-.|-||++.+ ++-||. -..|+|+= -.|+......+|..+ =..|+.+|..|+..|+..
T Consensus 42 ~~~l~~Ki~~lRif~de~gkmn~Sv~d~~---g~iL~VSQ--FTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~ 116 (145)
T 1jke_A 42 ANRLCERVLGYRIFSDAEGKMNLNVQQAG---GSVLVVSQ--FTLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQ 116 (145)
T ss_dssp HHHHHHHHHHCCCEECTTSCEEECTTTTT---CEEEEEEC--GGGGSBCSSSSSCBCSSBCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhEEeccCCCCCccCCHHHcC---CCEEEEEc--cccccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhc
Confidence 344566677899998744 344442 24455553 344444322222222 267899999999999987
Q ss_pred CC
Q 015598 112 EL 113 (404)
Q Consensus 112 ~l 113 (404)
++
T Consensus 117 ~~ 118 (145)
T 1jke_A 117 EM 118 (145)
T ss_dssp TC
T ss_pred CC
Confidence 64
Done!