Query 015598
Match_columns 404
No_of_seqs 118 out of 283
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 15:24:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015598.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015598hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1skye1 a.69.1.1 (E:357-470) F 25.9 18 0.0013 27.9 2.5 48 31-85 10-67 (114)
2 d2jdid1 a.69.1.1 (D:358-475) F 22.8 22 0.0016 27.4 2.5 48 31-85 13-70 (118)
3 d3bwga1 a.4.5.6 (A:5-82) Trans 20.2 23 0.0017 24.6 2.0 19 307-325 7-25 (78)
4 d1fx0b1 a.69.1.1 (B:378-485) F 19.3 29 0.0021 26.3 2.6 48 31-85 10-67 (108)
5 d1jkea_ c.110.1.1 (A:) D-Tyr t 14.9 20 0.0014 28.7 0.5 71 41-113 41-118 (145)
6 d1z84a1 d.13.1.2 (A:23-195) Ga 14.8 48 0.0035 26.7 3.1 17 315-331 106-124 (173)
7 d2pqrb1 a.118.8.1 (B:5-128) Mi 13.4 2.1E+02 0.016 21.5 6.5 72 7-107 31-102 (124)
8 d2ahob1 a.60.14.1 (B:85-175) E 12.0 1.2E+02 0.0087 21.6 4.3 26 132-157 4-29 (91)
9 d3deoa1 b.34.13.2 (A:85-128) C 11.1 31 0.0023 21.6 0.5 10 385-394 20-29 (44)
10 d2h5na1 a.287.1.2 (A:1-132) Hy 10.9 40 0.0029 24.9 1.1 10 321-330 117-126 (132)
No 1
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=25.89 E-value=18 Score=27.86 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhCCCCCCCCCccccccc----------hhhhhHHHHhhhhcccc
Q 015598 31 DPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTAN----------LKYILVPYFLGELIEKI 85 (404)
Q Consensus 31 ~q~~l~~~i~~l~~~~~~v~~l~lFS~NE~leDIsT~~----------L~yLllpy~lg~L~~k~ 85 (404)
+...|++.|..|+.++.+|.-|| +||+|..| -+||.=|||.|+...-.
T Consensus 10 ~a~~v~~~LqrYkeLqDIIaiLG-------~dELSeeDk~~V~RARklqrFLsQpF~vaE~fTG~ 67 (114)
T d1skye1 10 VARKVQQTLERYKELQDIIAILG-------MDELSDEDKLVVHRARRIQFFLSQNFHVAEQFTGQ 67 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-------STTCTTHHHHHHHHHHHHHHHTCBCCTTTHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-------chhcCHHHHHHHHHHHHHHHHhcCCceeceeecCC
Confidence 35678899999999999999998 58888776 36888899999987654
No 2
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.83 E-value=22 Score=27.44 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHHHHHHHhhhhCCCCCCCCCccccccc----------hhhhhHHHHhhhhcccc
Q 015598 31 DPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTAN----------LKYILVPYFLGELIEKI 85 (404)
Q Consensus 31 ~q~~l~~~i~~l~~~~~~v~~l~lFS~NE~leDIsT~~----------L~yLllpy~lg~L~~k~ 85 (404)
+...|.+.|..|+.++.+|.-|| +||+|-.| -+||.=|||.|+...-.
T Consensus 13 ~a~~V~~~LqrYkeLqdIIaiLG-------~dELSeeDk~~V~RARklqrfLsQpFfvae~fTg~ 70 (118)
T d2jdid1 13 VARGVQKILQDYKSLQDIIAILG-------MDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGH 70 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-------GGGSCHHHHHHHHHHHHHHHHHCCCCGGGHHHHSS
T ss_pred HHHHHHHHHHHhHHHHHHHHHcC-------hhhcCHHHhHHHHHHHHHHHHhcCcceeeeeecCC
Confidence 35678899999999999999998 68888776 47999999999987654
No 3
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=20.23 E-value=23 Score=24.64 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=17.0
Q ss_pred HHHHHHhhcCCCCCCCCcc
Q 015598 307 ERERMAAQVFQPMHRLPTM 325 (404)
Q Consensus 307 ~R~~lq~~VFgpg~~LPTM 325 (404)
-+..+..+.|.||..||+.
T Consensus 7 i~~~I~~g~l~~G~~LPse 25 (78)
T d3bwga1 7 IETYIEEHQLQQGDKLPVL 25 (78)
T ss_dssp HHHHHHHTTCCTTCBCCCH
T ss_pred HHHHHHcCCCCCcCCCcCH
Confidence 3889999999999999983
No 4
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=19.34 E-value=29 Score=26.29 Aligned_cols=48 Identities=19% Similarity=0.453 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhCCCCCCCCCccccccc----------hhhhhHHHHhhhhcccc
Q 015598 31 DPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTAN----------LKYILVPYFLGELIEKI 85 (404)
Q Consensus 31 ~q~~l~~~i~~l~~~~~~v~~l~lFS~NE~leDIsT~~----------L~yLllpy~lg~L~~k~ 85 (404)
....|++.|..|+.++.+|.-|| +||+|-.+ -+||.=|||.++.....
T Consensus 10 ~a~~v~~iLqrYkeLqdIIailG-------~dELSeeDk~~v~RArklq~FLtQpFfvae~fTg~ 67 (108)
T d1fx0b1 10 IAQRVKETLQRYKELQDIIAILG-------LDELSEEDRLTVARARKIERFLSQPFFVAEVFTGS 67 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-------STTSCTTTHHHHHHHHHHHHHTCCCCSSCTTTSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-------hhhcChhhhHHHHHHHHHHHHhccccccceecCCC
Confidence 45678899999999999999998 57777665 47888999999887544
No 5
>d1jkea_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Escherichia coli [TaxId: 562]}
Probab=14.85 E-value=20 Score=28.75 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhhCCCCCCCCCccccccc--hhhhhHHHHhhhhcccccchh-----HHHHHHHHHHHHHHHHHHHHhcCC
Q 015598 41 VLEKCEDMVGKLGLFSSNETKDDISTAN--LKYILVPYFLGELIEKIAQDD-----RLQILKASQAKLKEFISFCEIMEL 113 (404)
Q Consensus 41 ~l~~~~~~v~~l~lFS~NE~leDIsT~~--L~yLllpy~lg~L~~k~~~~~-----R~~~L~~A~~~~~~FL~~l~~Y~l 113 (404)
....+.+-|..+-||++.+.-=..|-.+ -..|+||=+ .|+......+ ...-=+.|+..|..|++.|+..++
T Consensus 41 ~~~~~~~Kil~lRiF~d~~gk~~~Sv~d~~geiLiVSQF--TL~a~~~KG~rPsF~~Aa~p~~A~~ly~~f~~~l~~~~~ 118 (145)
T d1jkea_ 41 KANRLCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQF--TLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQEM 118 (145)
T ss_dssp HHHHHHHHHHHCCCEECTTSCEEECTTTTTCEEEEEECG--GGGSBCSSSSSCBCSSBCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhheeecccccCCccCCHhHcCCcEEEeeee--eeeeeecCCCCceecccCCHHHHHHHHHHHHHHHHhcCC
Confidence 4445677778899999855433333333 345777755 5554432111 222237889999999999988754
No 6
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=14.79 E-value=48 Score=26.74 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=14.9
Q ss_pred cCCCCC--CCCcccHHHHH
Q 015598 315 VFQPMH--RLPTMSIEEAG 331 (404)
Q Consensus 315 VFgpg~--~LPTMTveE~~ 331 (404)
||.|.| +|++||++++.
T Consensus 106 i~sp~H~~~l~~~~~e~i~ 124 (173)
T d1z84a1 106 IESPVHSIQLSDIDPVGIG 124 (173)
T ss_dssp ECCSSSSCCGGGSCHHHHH
T ss_pred EeCccccCChhhCCHHHHH
Confidence 689999 79999999873
No 7
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.36 E-value=2.1e+02 Score=21.46 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHHHHHHhhhhCCCCCCCCCccccccchhhhhHHHHhhhhccccc
Q 015598 7 EELPLPSLFERGRKIHQIATESGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGELIEKIA 86 (404)
Q Consensus 7 ~~~sL~~lf~~~~~~~~~~~~s~~~q~~l~~~i~~l~~~~~~v~~l~lFS~NE~leDIsT~~L~yLllpy~lg~L~~k~~ 86 (404)
...|+...|+-||.+.. +.+...+..+|..|+.+.... .+-..+.|-||.|-|| +
T Consensus 31 ~~~s~qt~F~YAw~Lv~-----S~~~~d~~~gI~lLe~~~~~~------------p~~~rd~lY~Lav~yy------k-- 85 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIK-----STDVNDERLGVKILTDIYKEA------------ESRRRECLYYLTIGCY------K-- 85 (124)
T ss_dssp GGSCHHHHHHHHHHHHH-----SSCHHHHHHHHHHHHHHHHHC------------GGGHHHHHHHHHHHHH------H--
T ss_pred CCCCcchHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHhcC------------chhHHHHHHHHHHHHH------H--
Confidence 34677788888887643 246778899999997765421 1112344444444444 3
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 015598 87 QDDRLQILKASQAKLKEFISF 107 (404)
Q Consensus 87 ~~~R~~~L~~A~~~~~~FL~~ 107 (404)
+.-...|..|+..+|+.
T Consensus 86 ----lgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 86 ----LGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp ----HTCHHHHHHHHHHHHHH
T ss_pred ----HhhHHHHHHHHHHHHcc
Confidence 33357777777777764
No 8
>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=11.98 E-value=1.2e+02 Score=21.55 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015598 132 DQRARKIARFKRQRAAESKLQEIKER 157 (404)
Q Consensus 132 ~~R~~KI~rfK~eKelk~kL~~L~~~ 157 (404)
.+|..||.+||.+|...+-|..+.+.
T Consensus 4 ~qrr~k~~~~k~~qka~~il~~vAek 29 (91)
T d2ahob1 4 DERRKKNLQWKKIQRLDKILELVSQK 29 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999888763
No 9
>d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.11 E-value=31 Score=21.64 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=6.6
Q ss_pred hccccCCCCC
Q 015598 385 DDWKDDNPRG 394 (404)
Q Consensus 385 Dd~KD~npRG 394 (404)
=||||.|+--
T Consensus 20 iEWkD~h~pS 29 (44)
T d3deoa1 20 IEWKDGHSPS 29 (44)
T ss_dssp EEETTCCCCE
T ss_pred EEeccCCCCC
Confidence 3688888643
No 10
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=10.91 E-value=40 Score=24.91 Aligned_cols=10 Identities=60% Similarity=0.866 Sum_probs=8.7
Q ss_pred CCCcccHHHH
Q 015598 321 RLPTMSIEEA 330 (404)
Q Consensus 321 ~LPTMTveE~ 330 (404)
.||||||=|.
T Consensus 117 glptmtvmea 126 (132)
T d2h5na1 117 GLPTMTVMEA 126 (132)
T ss_dssp TCCCCCHHHH
T ss_pred CCchhHHHHH
Confidence 6999999875
Done!