Query 015600
Match_columns 404
No_of_seqs 156 out of 245
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 15:26:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb7_A Telomere-binding protei 100.0 3.8E-77 1.3E-81 611.1 27.3 348 3-403 31-445 (495)
2 1xjv_A Protection of telomeres 100.0 4.7E-62 1.6E-66 473.1 30.6 276 6-305 2-290 (294)
3 4hik_A Protection of telomeres 100.0 4.1E-35 1.4E-39 251.6 13.2 129 154-304 2-142 (143)
4 1qzg_A Protection of telomeres 100.0 2E-33 6.7E-38 250.4 17.8 142 6-148 25-174 (187)
5 4gop_C Putative uncharacterize 99.3 7.1E-10 2.4E-14 112.8 24.9 321 10-403 3-371 (444)
6 1jmc_A Protein (replication pr 98.8 4.2E-07 1.4E-11 84.9 18.5 225 7-303 5-240 (246)
7 2k50_A Replication factor A re 98.6 2.5E-07 8.5E-12 76.3 9.3 93 5-103 2-99 (115)
8 2k75_A Uncharacterized protein 98.4 1.6E-06 5.6E-11 70.5 9.9 88 8-108 1-91 (106)
9 1o7i_A SSB, SSO2364, single st 98.2 1.3E-05 4.4E-10 66.5 12.4 89 10-108 2-94 (119)
10 1jmc_A Protein (replication pr 98.2 5.7E-06 2E-10 77.1 10.5 92 5-101 121-218 (246)
11 4gop_C Putative uncharacterize 98.2 6.9E-06 2.4E-10 83.3 11.6 88 6-95 117-212 (444)
12 2kbn_A Conserved protein; nucl 97.9 0.00012 4.1E-09 59.7 11.1 84 10-103 5-88 (109)
13 3dm3_A Replication factor A; p 97.8 9.9E-05 3.4E-09 59.8 9.4 84 9-101 4-92 (105)
14 3e0e_A Replication protein A; 97.7 0.00025 8.6E-09 56.4 9.9 83 11-102 3-89 (97)
15 2k75_A Uncharacterized protein 97.6 0.00082 2.8E-08 54.4 12.1 94 159-293 4-98 (106)
16 2k50_A Replication factor A re 97.4 0.00082 2.8E-08 54.9 10.0 91 157-290 7-107 (115)
17 1o7i_A SSB, SSO2364, single st 97.4 0.0015 5.2E-08 53.8 11.3 87 159-290 3-98 (119)
18 2kbn_A Conserved protein; nucl 97.4 0.0032 1.1E-07 51.1 12.8 89 159-291 6-97 (109)
19 1wjj_A Hypothetical protein F2 97.3 0.001 3.4E-08 56.9 8.6 88 6-102 12-113 (145)
20 1wjj_A Hypothetical protein F2 97.2 0.0071 2.4E-07 51.6 13.5 49 238-290 74-122 (145)
21 3dm3_A Replication factor A; p 96.6 0.019 6.4E-07 46.2 10.5 93 157-286 5-98 (105)
22 3e0e_A Replication protein A; 95.9 0.058 2E-06 42.5 9.9 91 159-285 3-93 (97)
23 1ynx_A Replication factor-A pr 95.6 0.084 2.9E-06 42.8 9.6 99 159-291 5-112 (114)
24 1xjv_A Protection of telomeres 95.0 0.2 6.9E-06 47.5 11.8 84 156-280 5-93 (294)
25 1jb7_A Telomere-binding protei 94.6 1.8 6E-05 44.1 18.3 105 156-290 37-151 (495)
26 1ynx_A Replication factor-A pr 94.5 0.012 4.1E-07 48.0 1.6 81 9-95 3-88 (114)
27 1qzg_A Protection of telomeres 94.4 0.31 1.1E-05 43.0 10.7 86 161-282 36-128 (187)
28 3u4z_A Telomerase-associated p 94.3 0.45 1.5E-05 35.7 9.5 87 12-107 3-90 (109)
29 1miu_A BRCA2, breast cancer ty 93.9 0.64 2.2E-05 49.2 13.5 152 44-270 511-670 (738)
30 1l1o_C Replication protein A 7 93.7 0.18 6.3E-06 44.3 7.8 72 332-403 5-106 (181)
31 4gop_B Putative uncharacterize 93.3 0.68 2.3E-05 38.5 10.4 69 22-101 37-109 (136)
32 3kdf_D Replication protein A 3 93.0 0.99 3.4E-05 37.3 10.8 70 22-101 32-104 (132)
33 3ebe_A Protein MCM10 homolog; 91.4 0.19 6.6E-06 44.9 4.8 82 7-90 35-123 (200)
34 4hik_A Protection of telomeres 91.2 0.42 1.4E-05 40.4 6.4 83 9-100 4-108 (143)
35 3u58_A Tetrahymena TEB1 AB; te 90.9 2.3 8E-05 35.3 10.4 85 11-103 120-205 (213)
36 2pi2_A Replication protein A 3 90.1 2.2 7.6E-05 39.7 11.1 82 10-101 48-144 (270)
37 3u50_C Telomerase-associated p 79.4 0.51 1.7E-05 41.2 0.8 31 373-403 72-102 (172)
38 3kf6_A Protein STN1; OB fold, 77.1 33 0.0011 29.1 12.1 30 166-197 46-75 (159)
39 3r8s_P 50S ribosomal protein L 74.0 6.9 0.00024 31.5 6.0 41 70-111 14-62 (114)
40 3kdf_D Replication protein A 3 73.3 35 0.0012 27.6 13.0 81 168-293 32-114 (132)
41 2ftc_K 39S ribosomal protein L 71.5 6.5 0.00022 30.8 5.2 42 72-114 1-49 (98)
42 4gop_B Putative uncharacterize 70.2 43 0.0015 27.3 11.0 82 166-293 35-119 (136)
43 2pi2_A Replication protein A 3 67.9 74 0.0025 29.1 13.5 82 167-293 71-154 (270)
44 3kf6_A Protein STN1; OB fold, 67.5 8.4 0.00029 32.9 5.6 71 22-101 48-121 (159)
45 3v2d_T 50S ribosomal protein L 64.1 13 0.00045 31.1 5.9 40 70-110 17-64 (146)
46 1miu_A BRCA2, breast cancer ty 58.3 23 0.00079 37.5 7.9 72 11-93 597-672 (738)
47 3f2b_A DNA-directed DNA polyme 55.3 17 0.00058 40.2 6.6 85 9-99 6-94 (1041)
48 3f2b_A DNA-directed DNA polyme 47.3 50 0.0017 36.5 8.6 40 159-198 8-51 (1041)
49 3mxn_A RECQ-mediated genome in 47.1 25 0.00084 29.9 4.9 62 329-396 18-80 (157)
50 2hpi_A DNA polymerase III alph 44.1 17 0.00057 41.0 4.3 76 11-91 1027-1107(1220)
51 2zjr_M 50S ribosomal protein L 40.9 19 0.00065 30.8 3.2 41 70-111 22-70 (166)
52 3koj_A Uncharacterized protein 37.2 28 0.00097 27.5 3.6 26 238-263 54-79 (108)
53 3u4z_A Telomerase-associated p 34.8 63 0.0022 24.0 4.8 40 160-201 3-44 (109)
54 3afp_A Single-stranded DNA-bin 33.4 49 0.0017 28.2 4.8 73 22-94 5-90 (168)
55 1txy_A Primosomal replication 22.8 1E+02 0.0035 23.7 4.5 32 239-282 50-81 (104)
56 3k8a_A Putative primosomal rep 22.5 1.2E+02 0.0042 23.4 4.9 77 22-101 8-94 (103)
57 1z9f_A Single-strand binding p 21.4 59 0.002 27.3 3.0 27 238-264 64-90 (153)
58 3koj_A Uncharacterized protein 21.3 1.1E+02 0.0038 24.0 4.4 72 23-94 13-90 (108)
No 1
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=100.00 E-value=3.8e-77 Score=611.07 Aligned_cols=348 Identities=19% Similarity=0.250 Sum_probs=299.7
Q ss_pred CCCCCcceeehHhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCC-----CCe-----EEEEecCCCCCC
Q 015600 3 SQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQS-----PEL-----LVNIFTSSIDQL 72 (404)
Q Consensus 3 ~~~~~y~y~~i~~~~~~~~~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~-----~gl-----~v~iF~~~~~~L 72 (404)
+..++|+|++|++|....++.|||||||+|+++|++|+|+||+|+|+|+|+|+.. .|| +|+||++++++|
T Consensus 31 ~~~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~L 110 (495)
T 1jb7_A 31 DKGHKYEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDL 110 (495)
T ss_dssp -----CCBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGS
T ss_pred cccCCCccEEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHC
Confidence 4578899999999987789999999999999999999999999999999999982 389 999999999999
Q ss_pred CCCCCCCCEEEEeeEEEEEEcCeeEEEeecCc-eEEEEEeCCC------------CCCCCCCccCCCCCCCCHHHHHHHH
Q 015600 73 PRVLSPRDLILLKNVMIKKHQAELSAVFYKDS-SSFALFDGNS------------GSNLLPYQSSPQRFEITEAEERRIN 139 (404)
Q Consensus 73 P~v~~~GDII~l~rvki~~~~g~~~~~~~~~~-ss~~vf~~~~------------~~~~~P~~~s~~~~~~~~~e~~~v~ 139 (404)
|.|.++||||+|||++|+.|+|++++++++++ |+|+||++.. +.++.||+.|+.+|+++++|++++.
T Consensus 111 P~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v~ 190 (495)
T 1jb7_A 111 PIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQ 190 (495)
T ss_dssp CCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHH
T ss_pred CCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHHHH
Confidence 99988999999999999999999999999776 8999999987 6778999988667999999999999
Q ss_pred HHHHhhhcCccc---CCCcccccccc-cccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCCccCCCC
Q 015600 140 VLRQWCVGFEFS---SGSNDYLLSLK-DISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPL 215 (404)
Q Consensus 140 ~Lr~w~~~~~~~---~~~~~f~~~L~-di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~ 215 (404)
.||+|+.++... .++++| .+|+ ||++++||||+||||+++ ..++++++|||||||++|+++
T Consensus 191 ~LR~W~~~~~~~~~~~~~~~f-~~L~~di~~~~f~DLv~qVv~~~-~~d~~~~~L~VwDgT~~~~~~------------- 255 (495)
T 1jb7_A 191 NLRKWANQYFSSYSVISSDMY-TALNKAQAQKGDFDVVAKILQVH-ELDEYTNELKLKDASGQVFYT------------- 255 (495)
T ss_dssp HHHHHHHHHHHHSCSSCGGGS-CCGGGGGGCSSCEEEEEEEEEEE-ECSSSEEEEEEEETTCCEEEE-------------
T ss_pred HHHHHHHhcccccccccccch-hhhhhhhccCCceeEEEEEeEEe-ccCCCeEEEEEEeCCCCCcce-------------
Confidence 999999887652 356678 8999 999999999999999999 547899999999999998872
Q ss_pred CccccCCCCChhhhccCCCC--ceEEEEEecCchhhhh-hccCCCCcEEEEeceEEEEeCcEEEEEEecCCceE------
Q 015600 216 PLHIESSPLDLETLRNFFPV--GTVLRVSTDRSYENFG-RYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR------ 286 (404)
Q Consensus 216 ~~~~~~~~l~~~~~~~~pp~--G~~l~V~~~~~~~~~~-~~~~k~g~wv~l~Nv~~k~~~g~leG~l~~~ski~------ 286 (404)
.+.++++|.+ |++|+|..++..++.+ .+.++.|.| +||. ++..+++++
T Consensus 256 ----------~~~~~~fP~~~~G~Vlri~~~~~de~~~~l~~~~~~~w---~ni~----------~~~~~sk~~ke~~~~ 312 (495)
T 1jb7_A 256 ----------LSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHY---SNII----------TFIQSSKLAKELRAK 312 (495)
T ss_dssp ----------EEETTTCTTCCTTCEEEEEEEEECTTCCSSCEEEEEEE---EEEE----------EECTTCHHHHHHHHH
T ss_pred ----------eeccccCCceeeEEEEEEecCccchhhhhhhhhccccc---ccee----------EEcccchhhhhhhhc
Confidence 2457889988 9999999986655443 466889999 5666 455567777
Q ss_pred EcCCCChHHHHHHHHHHHHHhCCCCCCCCcCCCCCCCCcccc--cCCCccccHHHHhcC----CCCCce--EEEEEEEEe
Q 015600 287 LFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVD--WVNVASVTLMKIATQ----LQGNVR--CCCIVRVVS 358 (404)
Q Consensus 287 ~l~~~d~~v~~r~r~y~~~~~~~~~~~~~~~~p~~~~~t~~~--~~~~p~ttL~~IL~~----~~~~~k--yr~~VRVV~ 358 (404)
+++++ +.++. + +|+++.++++.+|+++ |+++|+|||||||++ +++++| |||+||||+
T Consensus 313 ~l~~~---~~~~~-----~-------~~~~~~~~~~~lT~~~~~~~~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~ 377 (495)
T 1jb7_A 313 IQDDH---SVEVA-----S-------LKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTK 377 (495)
T ss_dssp SCCCC---HHHHH-----H-------TTSSSCSSCEECEEECGGGTTSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEE
T ss_pred ccchh---hhhhh-----h-------cccccCCCCCcCCeecccCCCCCcEEHHHHhcCcccCccccccccEEEEEEEEE
Confidence 67665 33321 1 5677777778899988 999999999999988 778887 999999999
Q ss_pred ecCCCccccccC-----------C-----CCcEEEEEEEEeCCC-------ceEEEEEeccccccccc
Q 015600 359 IHPFQAEHYSSP-----------N-----GSSEYTMKLTLEDPT-------ARIHALLCGKEWVRFQL 403 (404)
Q Consensus 359 ~~P~~l~df~~~-----------~-----~~~~~~f~L~leD~t-------~~~~~~v~~~da~~f~~ 403 (404)
|||+++||||++ . ++.+|||||||||+| +||+|||||+||+.||+
T Consensus 378 ~~P~~i~df~~~~~~~~~~~~s~~g~~~~~~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~ 445 (495)
T 1jb7_A 378 IEPSDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFN 445 (495)
T ss_dssp EESSSGGGGEEEEETTTTEEECSTTCGGGCEEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTS
T ss_pred ecCCCHHHhhhhhccccccccccccccCCCCceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecC
Confidence 999999999954 2 367999999999999 99999999998888884
No 2
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=100.00 E-value=4.7e-62 Score=473.15 Aligned_cols=276 Identities=23% Similarity=0.347 Sum_probs=240.5
Q ss_pred CCcceeehHhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 015600 6 NQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (404)
Q Consensus 6 ~~y~y~~i~~~~~~~~~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (404)
++|+|++|+++ +.++.|||||||+|+++|++|+|+||+|+|+|+|+|.. ||+|+||+++++.||.+.++||||+||
T Consensus 2 ~~y~y~~l~~l--~~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~--gl~v~iF~~~~~~LP~v~~~GDII~l~ 77 (294)
T 1xjv_A 2 TNYIYTPLNQL--KGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNV--KLTCLLFSGNYEALPIIYKNGDIVRFH 77 (294)
T ss_dssp CCCCCCCGGGC--CSSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCC--EEEEEEEESSGGGSCCCCSTTCEEEEE
T ss_pred CcceEEEHHHh--hCCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCC--CEEEEEECCChHHCCCCCCCCCEEEEE
Confidence 68999999988 46889999999999999999999999999999999984 699999999999999999999999999
Q ss_pred eEEEEEEcCeeEEEeecCceEEEEEeCCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCccccccccccc
Q 015600 86 NVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDIS 165 (404)
Q Consensus 86 rvki~~~~g~~~~~~~~~~ss~~vf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~w~~~~~~~~~~~~f~~~L~di~ 165 (404)
|++|+.|+|+++++++.++ +|++|+|..+.++.|+++++. |+++++|++++..||+|+.+++.... +| .+|+||+
T Consensus 78 ~vki~~~~g~~~~v~~~~~-s~~~f~g~~~~~~~p~~~~~~-~~~~~~e~~~~~~Lr~w~~~~~~~~~--~~-~~L~di~ 152 (294)
T 1xjv_A 78 RLKIQVYKKETQGITSSGF-ASLTFEGTLGAPIIPRTSSKY-FNFTTEDHKMVEALRVWASTHMSPSW--TL-LKLCDVQ 152 (294)
T ss_dssp EEEEEEETTEEEEEEEEEE-EEEEECCSTTCCCCCBCSCSS-CCCCHHHHHHHHHHHHHHHHHCC-----CC-CCGGGCC
T ss_pred EEEEEEECCeEEEEccCCe-EEEEECCCCCCCcCCcccCCC-cCCCHHHHHHHHHHHHHHHhccCCCC--ce-eEHHHcc
Confidence 9999999999999998775 455899998888899776655 99999999999999999988765443 48 8999999
Q ss_pred CCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChhhhccCCCCce-EEEEEec
Q 015600 166 EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGT-VLRVSTD 244 (404)
Q Consensus 166 ~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pp~G~-~l~V~~~ 244 (404)
+++||||+||||+++ ..++++++|||||||+||.+.++...++++.+++++.. . +.|+ +++|++|
T Consensus 153 ~~~f~DLv~qVv~v~-~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~------~-------~~~~lt~~V~~~ 218 (294)
T 1xjv_A 153 PMQYFDLTCQLLGKA-EVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHI------H-------RLQNLTIDILVY 218 (294)
T ss_dssp SSCEEEEEEEEEEEE-ECSSSEEEEEEECSSCCSSCBCCCCCCSSCCEECHHHH------H-------HHGGGSEEEEEE
T ss_pred cCCeeeEEEEEEEEE-ecCCCeEEEEEECCCCCCCCccccccccccccCccccc------c-------cccCeeEEEEEE
Confidence 999999999999999 55789999999999999998777655554444443221 0 2466 9999999
Q ss_pred CchhhhhhccCCCCcEEEEeceEEEEe--------CcEEEEEEecCC----ceEEcCCCChHHHHHHHHHHHH
Q 015600 245 RSYENFGRYFTATGKWVRIRNMSCQVS--------SGMWHGLLQSSS----KIRLFSDNDNVVWDYMRRFRER 305 (404)
Q Consensus 245 ~~~~~~~~~~~k~g~wv~l~Nv~~k~~--------~g~leG~l~~~s----ki~~l~~~d~~v~~r~r~y~~~ 305 (404)
++|+.+++ .+|+||||+|+||++|++ +|.|||.||+++ ||++|+++|++++++++..+..
T Consensus 219 d~h~~~~~-~lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 290 (294)
T 1xjv_A 219 DNHVHVAR-SLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLESA 290 (294)
T ss_dssp TTHHHHHH-HCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECSSCGGGCEEEEECTTSHHHHHHHHHHHHH
T ss_pred cchhHHHh-cCCCCcEEEEeeeEEEecccccccCCCcceEEEEecCcccCcEeEEecCCCCCHHHHHHHHhhc
Confidence 99998755 899999999999999996 789999999984 8999999999999888776543
No 3
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=100.00 E-value=4.1e-35 Score=251.57 Aligned_cols=129 Identities=18% Similarity=0.295 Sum_probs=110.7
Q ss_pred CcccccccccccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChhhhccCC
Q 015600 154 SNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFF 233 (404)
Q Consensus 154 ~~~f~~~L~di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p 233 (404)
++|| ++|+||++++||||+||||+++++ + ++++|||||||+|+.+ +++..+++ ...|+
T Consensus 2 ~~kf-~llkdv~~~~F~Dl~~qVv~~~~~-~-~~~~LyVTDYT~N~~~-~~~~~~~~------------------~~~W~ 59 (143)
T 4hik_A 2 SDSF-SLLSQITPHQRCSFYAQVIKTWYS-D-KNFTLYVTDYTENELF-FPMSPYTS------------------SSRWR 59 (143)
T ss_dssp --CC-CCGGGCCSSCEEEEEEEEEEEEEC-S-SCEEEEEECSCCCTTS-CCBCTTCT------------------TCSCC
T ss_pred Cchh-hhHHhCCCCCeEEEEEEEEEEEcC-C-CeEEEEEecCCCCCcc-cccccCCC------------------Ccccc
Confidence 3579 999999999999999999999954 3 9999999999999998 55533220 13799
Q ss_pred -CCce-EEEEEecCchhhhhhccCCCCcEEEEeceEEEE-eCcEEEEEEecCC----c--eEEcCCCCh---HHHHHHHH
Q 015600 234 -PVGT-VLRVSTDRSYENFGRYFTATGKWVRIRNMSCQV-SSGMWHGLLQSSS----K--IRLFSDNDN---VVWDYMRR 301 (404)
Q Consensus 234 -p~G~-~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~-~~g~leG~l~~~s----k--i~~l~~~d~---~v~~r~r~ 301 (404)
|+|+ +|||+||++||.++++++++|+||+|+|||+|+ .+|.|||+||+++ | |.+|+++|| ++++||++
T Consensus 60 Gp~G~~tlqVtlwd~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~dr~~~~ki~v~~ld~~~~~lk~ll~Rk~~ 139 (143)
T 4hik_A 60 GPFGRFSIRCILWDEHDFYCRNYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRL 139 (143)
T ss_dssp CCCBSCCEEEEECHHHHHHHTTTCCTTCEEEEEEEEEEECTTSCEEEEECCCTTCCSCCEEEEECTTCGGGHHHHHHHGG
T ss_pred CCCCcEEEEEEEECcHHHHHHhhCCCCCEEEEEeEEEeecCCceEEEEEcCCCCCCCcceEEEcCCCCHHHHHHHHHHHH
Confidence 9999 999999999999999999999999999999999 5789999999997 4 456887777 78899999
Q ss_pred HHH
Q 015600 302 FRE 304 (404)
Q Consensus 302 y~~ 304 (404)
||+
T Consensus 140 Y~~ 142 (143)
T 4hik_A 140 YVQ 142 (143)
T ss_dssp GC-
T ss_pred Hhh
Confidence 986
No 4
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=100.00 E-value=2e-33 Score=250.37 Aligned_cols=142 Identities=20% Similarity=0.276 Sum_probs=123.3
Q ss_pred CCcceeehHhhhh--ccCCEEEEEEEEEecCCceec-CCC-ceEEEEEEEeCCCC--CCCeEEEEecCCCCCCCCCCCCC
Q 015600 6 NQGGIVRIKELAM--HVKHKVNLLGVVLEFSIPRKS-QGT-DYVCVLKIVDDSQQ--SPELLVNIFTSSIDQLPRVLSPR 79 (404)
Q Consensus 6 ~~y~y~~i~~~~~--~~~~~vnv~GVV~d~~~P~~t-rGt-D~~~t~~I~D~S~~--~~gl~v~iF~~~~~~LP~v~~~G 79 (404)
..++|++|++++. +.++.|||||||+|+++|++| +|+ ||+|+|+|+|+|+. +.||+|+||++++++||.|.++|
T Consensus 25 ~~~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~G 104 (187)
T 1qzg_A 25 GELTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVG 104 (187)
T ss_dssp TTEEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTT
T ss_pred cceeEEEHHHHHhhccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCC
Confidence 4688999999986 468899999999999999999 999 99999999999975 56999999999999999999999
Q ss_pred CEEEEeeEEEEEEcCeeEEEeecCceEEEEEeCCCCCCCCCCcc--CCCCCCCCHHHHHHHHHHHHhhhcC
Q 015600 80 DLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQS--SPQRFEITEAEERRINVLRQWCVGF 148 (404)
Q Consensus 80 DII~l~rvki~~~~g~~~~~~~~~~ss~~vf~~~~~~~~~P~~~--s~~~~~~~~~e~~~v~~Lr~w~~~~ 148 (404)
|||+|||+|||.|+|++++++++++ +|++|++..+.+..|++. ++.++.++++|++|+..||+||..+
T Consensus 105 DIIlL~rvkiq~~~g~~~~v~~~~~-s~a~f~~~~~~~~~~~~~~~~p~~~~~~~~E~~ya~~L~~~w~~~ 174 (187)
T 1qzg_A 105 QPLLLHQITLRSYRDRTQGLSKDQF-RYALWPDFSSNSKDTLCPQPMPRLMKTGDKEEQFALLLNKIWDEQ 174 (187)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEE-EEEECCCTTCSCSCCSCCCCSTTBCCCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEEECCeEEEEEcCce-eEEEEeccCCCCCCCCCCccCccCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998774 799999876543333332 3334899999999999999877543
No 5
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=99.28 E-value=7.1e-10 Score=112.81 Aligned_cols=321 Identities=11% Similarity=0.068 Sum_probs=193.1
Q ss_pred eeehHhhhhccCCEEEEEEEEEecCCcee---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEEEe
Q 015600 10 IVRIKELAMHVKHKVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLILLK 85 (404)
Q Consensus 10 y~~i~~~~~~~~~~vnv~GVV~d~~~P~~---trGtD~~~t~~I~D~S~~~~gl~v~iF~~~~~~L-P~v~~~GDII~l~ 85 (404)
+++|+++.. ......+.|-|+.....+. .+|..-..++.|.|++- .|.+.+|.+..+.+ |.+ +.|+++.|.
T Consensus 3 ~~~I~~L~p-~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~f~~~l-~eG~vy~Is 77 (444)
T 4gop_C 3 IYPIEGLSP-YQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG---EIKATGFNDAVDRFYPLL-QENHVYLIS 77 (444)
T ss_dssp CCCSTTCCT-TCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC---EEEEEEETHHHHHHTTTC-CTTCEEEEE
T ss_pred ceeHHHCCC-CCcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC---EEEEEEeHHHHHHHHHhe-ecCCEEEEc
Confidence 788999942 2336899999998776542 23444678899999854 49999998755555 455 899999999
Q ss_pred eEEEEEEcCeeEE-------EeecCceEEEEEeCCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCcccc
Q 015600 86 NVMIKKHQAELSA-------VFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYL 158 (404)
Q Consensus 86 rvki~~~~g~~~~-------~~~~~~ss~~vf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~w~~~~~~~~~~~~f~ 158 (404)
+.+|+..+++... .++.. |...... +..-.|. ..| .|
T Consensus 78 ~~~V~~~~~~y~~~~~~~ei~~~~~-T~V~~~~---d~~~iP~----~~~---------------------------~f- 121 (444)
T 4gop_C 78 KARVNIAKKQFSNLQNEYEITFENS-TEIEECT---DATDVPE----VKY---------------------------EF- 121 (444)
T ss_dssp SCEEEECCGGGCSCCCSEEEEECTT-CEEEECS---CCSSSCC----CCC---------------------------CB-
T ss_pred CCEEEecCCccccCCCCEEEEEcCC-cEEEEcc---CcccCcc----eee---------------------------cc-
Confidence 9999988765332 22221 2222111 0111120 012 14
Q ss_pred cccccc---cCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChhhhccCCCC
Q 015600 159 LSLKDI---SEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPV 235 (404)
Q Consensus 159 ~~L~di---~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pp~ 235 (404)
..|.|| ..+..+|+++.|+.+. +.. .++-+ .||++.... . +.+. + .-
T Consensus 122 ~~i~~i~~~~~~~~vDViG~V~~v~-~~~--~i~~k-~~g~~~~kr--~------------i~L~------D------~s 171 (444)
T 4gop_C 122 VRINELESVEANQQCDVIGILDSYG-ELS--EIVSK-ASQRPVQKR--E------------LTLV------D------QG 171 (444)
T ss_dssp CCGGGGGGSCSSCCCBEEEEEEEEC-CCE--EECCT-TTCSCEEEE--E------------EEEE------C------TT
T ss_pred cCHHHHhccCCCCceEEEEEEEEcC-CcE--EEEEc-cCCceeeEE--E------------EEEE------e------CC
Confidence 445555 4688999999999987 310 00000 011110000 0 0000 0 01
Q ss_pred ceEEEEEecCchhhhhhc--cCCCCcEEEEeceEEEEeCcEEEEEEecCCceEEcCCCChHHHHHHHHHHHHHhCC-CCC
Q 015600 236 GTVLRVSTDRSYENFGRY--FTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFRERISGG-HGH 312 (404)
Q Consensus 236 G~~l~V~~~~~~~~~~~~--~~k~g~wv~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~~v~~r~r~y~~~~~~~-~~~ 312 (404)
|..+++++|..+|..... ....|..|.|++++++..+|. .......++|. ++++-|++.+.+.-|...-... ...
T Consensus 172 g~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV~~f~G~-~ls~~~~s~i~-inPdipea~~l~~w~~~~g~~~~~~~ 249 (444)
T 4gop_C 172 NRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGR-SLSMFSSSTML-INPDITESHVLRGWYDNDGAHAQFQP 249 (444)
T ss_dssp CBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEEECTTSS-EEECCTTCEEE-ESCSSHHHHHHHHHHHHHTTTSCCBC
T ss_pred CCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEEeecCCe-EEeccccceEE-ECCCCHHHHHHHHHHHcCCCCccccc
Confidence 668899999988763221 167899999999999987774 44555556774 5667788888877665432211 110
Q ss_pred CCCcC-CCCCCCCcccccCCCccccHHHHhcC-C---CCCceEEEEEEEEeecCCCccccccC-----------------
Q 015600 313 MPIWT-DPSSQFLTEVDWVNVASVTLMKIATQ-L---QGNVRCCCIVRVVSIHPFQAEHYSSP----------------- 370 (404)
Q Consensus 313 ~~~~~-~p~~~~~t~~~~~~~p~ttL~~IL~~-~---~~~~kyr~~VRVV~~~P~~l~df~~~----------------- 370 (404)
+.... -+.............+..||+||++. + ..+..|.+.+.|+.+.+.+.-=-|+|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~~~~g~~~~~~~~~v~atI~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~ 329 (444)
T 4gop_C 250 YTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNKKVNLDHENNWR 329 (444)
T ss_dssp CCCCC---------CTTCCSSEECCHHHHHHTTTTSSSSCEEEEEEEEEEEECCTTCEEEECCSTTCCCBEEECTTSCEE
T ss_pred ccccccccccccccccccccccceeHHHHhhhccCCCCCCcEEEEEEEEEEEcCCceEEccCCcccCCCccccCCCccEE
Confidence 00000 00000000011123467899999973 2 34567999999998876432111111
Q ss_pred ---------CCCcEEEEEEEEeCCCceEEEEEeccccccccc
Q 015600 371 ---------NGSSEYTMKLTLEDPTARIHALLCGKEWVRFQL 403 (404)
Q Consensus 371 ---------~~~~~~~f~L~leD~t~~~~~~v~~~da~~f~~ 403 (404)
...|.|++.+.|.|.|+.+.+.++++.|+.+||
T Consensus 330 C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG 371 (444)
T 4gop_C 330 CEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIG 371 (444)
T ss_dssp ETTTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTT
T ss_pred CCCCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcC
Confidence 235778889999999999999999999999996
No 6
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.76 E-value=4.2e-07 Score=84.91 Aligned_cols=225 Identities=17% Similarity=0.206 Sum_probs=138.8
Q ss_pred CcceeehHhhhhccCCEEEEEEEEEecCCcee---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEE
Q 015600 7 QGGIVRIKELAMHVKHKVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLI 82 (404)
Q Consensus 7 ~y~y~~i~~~~~~~~~~vnv~GVV~d~~~P~~---trGtD~~~t~~I~D~S~~~~gl~v~iF~~~~~~L-P~v~~~GDII 82 (404)
+-.|++|+++.. .....++.|-|+....++. .+|.--..++.|.|++- . |.+.+|.+..+.+ |.+ +.|+++
T Consensus 5 ~~~~~~I~~L~p-~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-~--I~at~~~~~~~~~~~~l-~~G~vy 79 (246)
T 1jmc_A 5 QSKVVPIASLTP-YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG-E--IRATAFNEQVDKFFPLI-EVNKVY 79 (246)
T ss_dssp --CBCCGGGCCT-TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC-E--EEEEEEHHHHHHHGGGC-CTTCEE
T ss_pred ccceEEHHHCCC-CCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC-e--EEEEEChHHHHHhhhhc-ccCCEE
Confidence 346899999942 2336899999999887653 23445678899999876 3 9999998654554 445 899999
Q ss_pred EEeeEEEEEEcCe-------eEEEeecCceEEEEEeCCCCCCCCCCccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCc
Q 015600 83 LLKNVMIKKHQAE-------LSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSN 155 (404)
Q Consensus 83 ~l~rvki~~~~g~-------~~~~~~~~~ss~~vf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~w~~~~~~~~~~~ 155 (404)
.|.+++++..+++ ....++.. |.....+.. +-.| ...|.|.+
T Consensus 80 ~i~~~~v~~~~~~y~~~~~~~ei~~~~~-T~I~~~~~~---~~iP----~~~~~f~~----------------------- 128 (246)
T 1jmc_A 80 YFSKGTLKIANKQFTAVKNDYEMTFNNE-TSVMPCEDD---HHLP----TVQFDFTG----------------------- 128 (246)
T ss_dssp EEECCEEEECCGGGCCCCCSEEEECCTT-CEEEECCSC---SCCC----CCCCCBCC-----------------------
T ss_pred EECCCEEEEcccCcccCCCCEEEEEcCC-cEEEEccCc---ccCC----cceeeeEE-----------------------
Confidence 9999999987543 33333322 222211111 0012 11122211
Q ss_pred ccccccccccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChhhhccCCCC
Q 015600 156 DYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPV 235 (404)
Q Consensus 156 ~f~~~L~di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pp~ 235 (404)
| ..|.++..+.++|+++.|+.+. +.. .+.- -.||++..... +.+. + .-
T Consensus 129 -i-~~i~~~~~~~~vDViG~V~~v~-~~~--~~~~-k~~g~~~~~r~--------------~~l~------D------~s 176 (246)
T 1jmc_A 129 -I-DDLENKSKDSLVDIIGICKSYE-DAT--KITV-RSNNREVAKRN--------------IYLM------D------TS 176 (246)
T ss_dssp -G-GGGGGSCTTCEEEEEEEEEEEC-CCE--EEEE-TTTTEEEEEEE--------------EEEE------C------TT
T ss_pred -H-HHHhcccCCCceeEEEEEEEec-CeE--EEEE-ecCCCccEEEE--------------EEEE------C------CC
Confidence 3 3344445788999999999987 421 1100 00222111000 0000 0 02
Q ss_pred ceEEEEEecCchhhhhhccCCCCcEEEEeceEEEEeCcEEEEEEecCCceEEcCCCChHHHHHHHHHH
Q 015600 236 GTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFR 303 (404)
Q Consensus 236 G~~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~~v~~r~r~y~ 303 (404)
|+++++++|..+|.. -....|..|.|++++++..+| .+......|+|. ++++.|++.+.+.=|.
T Consensus 177 g~~i~~tLWg~~a~~--~~~~~~~vv~i~~~~v~~f~g-~~ls~~~~s~i~-inpd~pe~~~l~~w~~ 240 (246)
T 1jmc_A 177 GKVVTATLWGEDADK--FDGSRQPVLAIKGARVSDFGG-RSLSVLSSSTII-ANPDIPEAYKLRGWFD 240 (246)
T ss_dssp CCEEEEEEEHHHHHH--CCCTTCCEEEEEEEEEECTTS-SEEECCSSCEEE-SSCCSHHHHHHHHHHH
T ss_pred CCEEEEEEEchhhhh--cccCCCCEEEEEEEEEEecCC-eEEEecCcceEE-ECCCCHHHHHHHHHHH
Confidence 668999999987763 336889999999999988866 555666667884 7778888888776554
No 7
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.56 E-value=2.5e-07 Score=76.35 Aligned_cols=93 Identities=24% Similarity=0.344 Sum_probs=77.4
Q ss_pred CCCcceeehHhhhhccCCEEEEEEEEEecCCce--ecC-CC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 015600 5 RNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPR--KSQ-GT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRD 80 (404)
Q Consensus 5 ~~~y~y~~i~~~~~~~~~~vnv~GVV~d~~~P~--~tr-Gt-D~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GD 80 (404)
..+|.+++|+++ ..|+.++++|+|++.+.++ .++ |+ .-+..++|.|.|- .|.+.+|.+..+.+..+ ..||
T Consensus 2 ~~~~~~~~I~~L--~~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG---~I~~t~w~~~~~~~~~l-~~G~ 75 (115)
T 2k50_A 2 KPEHRMDTISKL--EEGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG---ELRAVFWTENIKLLKKF-REGD 75 (115)
T ss_dssp CCTTCCCCTTTC--CTTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE---EEEEEEETTGGGGGGTC-CTTS
T ss_pred ccccceEEHHHC--CCCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC---eEEEEEeCchhhhhhcC-CCCC
Confidence 467889999999 5799999999999998776 454 43 5789999999975 39999998765666666 7899
Q ss_pred EEEEeeEEEEE-EcCeeEEEeecC
Q 015600 81 LILLKNVMIKK-HQAELSAVFYKD 103 (404)
Q Consensus 81 II~l~rvki~~-~~g~~~~~~~~~ 103 (404)
+|.+.+..++. |+|++++.....
T Consensus 76 vv~i~g~~v~~~f~g~~qL~~~~~ 99 (115)
T 2k50_A 76 VIRIKDVNIRGGFGGRKEAHLMPR 99 (115)
T ss_dssp EEEEEEEEECCCSSSSCEEEECTT
T ss_pred EEEEEeeEEccccCCeEEEEECCC
Confidence 99999999986 999999888654
No 8
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.39 E-value=1.6e-06 Score=70.49 Aligned_cols=88 Identities=18% Similarity=0.297 Sum_probs=71.8
Q ss_pred cceeehHhhhhccCCE-EEEEEEEEecCCceecC-CCc-eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEE
Q 015600 8 GGIVRIKELAMHVKHK-VNLLGVVLEFSIPRKSQ-GTD-YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILL 84 (404)
Q Consensus 8 y~y~~i~~~~~~~~~~-vnv~GVV~d~~~P~~tr-GtD-~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l 84 (404)
|.++.|+|+ .++.. ||++|.|++...|+.++ |+. ..+++.|.|+|= .|.++++.+. + +.||+|+|
T Consensus 1 ~~~~kI~dl--~pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG---~I~~tlW~~~------l-~~Gdvv~i 68 (106)
T 2k75_A 1 SDLVKIRDV--SLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTA---RIRISSFGKQ------L-QDSDVVRI 68 (106)
T ss_dssp CCBCCSTTC--CTTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSC---EEEEEEESSC------C-CTTEEEEE
T ss_pred CCcEEHHHc--CCCCceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCC---eEEEEEEcCc------c-CCCCEEEE
Confidence 678899999 45655 99999999999886444 543 588999999975 3999999864 5 88999999
Q ss_pred eeEEEEEEcCeeEEEeecCceEEE
Q 015600 85 KNVMIKKHQAELSAVFYKDSSSFA 108 (404)
Q Consensus 85 ~rvki~~~~g~~~~~~~~~~ss~~ 108 (404)
++.+++.|+|++++..++. +...
T Consensus 69 ~ng~v~~~~g~~~L~v~~~-~~I~ 91 (106)
T 2k75_A 69 DNARVAQFNGYLSLSVGDS-SRIE 91 (106)
T ss_dssp EEEEEEEETTEEEEEECTT-SEEE
T ss_pred EeeEEeEECCEEEEEECCc-EEEE
Confidence 9999999999999988754 4443
No 9
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=98.25 E-value=1.3e-05 Score=66.45 Aligned_cols=89 Identities=13% Similarity=0.205 Sum_probs=70.7
Q ss_pred eeehHhhhhccCC-EEEEEEEEEecCCce--ecC-CCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 015600 10 IVRIKELAMHVKH-KVNLLGVVLEFSIPR--KSQ-GTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (404)
Q Consensus 10 y~~i~~~~~~~~~-~vnv~GVV~d~~~P~--~tr-GtD~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (404)
|+.|+++ ..+. .+|++|+|++..+++ .++ |+--..++.|.|.|=. |.++++.+..+ .+ ..||||+++
T Consensus 2 f~~I~dL--~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~---I~~tlW~~~~~---~~-~~G~vv~i~ 72 (119)
T 1o7i_A 2 EEKVGNL--KPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR---VKLTLWGKHAG---SI-KEGQVVKIE 72 (119)
T ss_dssp BCCGGGC--CTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE---EEEEEEGGGTT---CC-CTTCEEEEE
T ss_pred cEEHHHC--cCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE---EEEEEECChhh---cC-CCCCEEEEE
Confidence 6789999 4565 699999999999876 455 4337889999999852 99999987543 24 789999999
Q ss_pred eEEEEEEcCeeEEEeecCceEEE
Q 015600 86 NVMIKKHQAELSAVFYKDSSSFA 108 (404)
Q Consensus 86 rvki~~~~g~~~~~~~~~~ss~~ 108 (404)
+.+++.|+|++++..... +...
T Consensus 73 ~g~v~~~~g~~qL~i~~~-~~i~ 94 (119)
T 1o7i_A 73 NAWTTAFKGQVQLNAGSK-TKIA 94 (119)
T ss_dssp EEEEEEETTEEEEEECTT-CEEE
T ss_pred eEEEEEeCCEEEEEECCC-EEEE
Confidence 999999999999888643 4444
No 10
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.21 E-value=5.7e-06 Score=77.11 Aligned_cols=92 Identities=13% Similarity=0.198 Sum_probs=72.3
Q ss_pred CCCcceeehHhhhhc-cCCEEEEEEEEEecCCcee--c--CCCc-eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCC
Q 015600 5 RNQGGIVRIKELAMH-VKHKVNLLGVVLEFSIPRK--S--QGTD-YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSP 78 (404)
Q Consensus 5 ~~~y~y~~i~~~~~~-~~~~vnv~GVV~d~~~P~~--t--rGtD-~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~ 78 (404)
...|.|++|+++.+. .+..|+|+|+|++++++.. + .|++ .+..|+|.|+|.. .|.|.++.+..+.++. ..
T Consensus 121 ~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~--~i~~tLWg~~a~~~~~--~~ 196 (246)
T 1jmc_A 121 TVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGK--VVTATLWGEDADKFDG--SR 196 (246)
T ss_dssp CCCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCC--EEEEEEEHHHHHHCCC--TT
T ss_pred cceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCC--EEEEEEEchhhhhccc--CC
Confidence 346788999999763 5778999999999999754 2 2554 5789999999864 4999999986666663 67
Q ss_pred CCEEEEeeEEEEEEcCeeEEEee
Q 015600 79 RDLILLKNVMIKKHQAELSAVFY 101 (404)
Q Consensus 79 GDII~l~rvki~~~~g~~~~~~~ 101 (404)
|+||.|+.++++.|+| ..+...
T Consensus 197 ~~vv~i~~~~v~~f~g-~~ls~~ 218 (246)
T 1jmc_A 197 QPVLAIKGARVSDFGG-RSLSVL 218 (246)
T ss_dssp CCEEEEEEEEEECTTS-SEEECC
T ss_pred CCEEEEEEEEEEecCC-eEEEec
Confidence 9999999999999955 555443
No 11
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=98.20 E-value=6.9e-06 Score=83.34 Aligned_cols=88 Identities=16% Similarity=0.296 Sum_probs=70.6
Q ss_pred CCcceeehHhhhhc-cCCEEEEEEEEEecCCcee--c--CCC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCC--CCC
Q 015600 6 NQGGIVRIKELAMH-VKHKVNLLGVVLEFSIPRK--S--QGT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPR--VLS 77 (404)
Q Consensus 6 ~~y~y~~i~~~~~~-~~~~vnv~GVV~d~~~P~~--t--rGt-D~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~--v~~ 77 (404)
..|.|++|+++... .+..|+|||+|+++++++. + .|+ -.+..|+|.|.|-.. |.|.++.+..+.+.. ...
T Consensus 117 ~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg~~--i~~tLWg~~A~~f~~~~~~~ 194 (444)
T 4gop_C 117 VKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRS--VKLTLWGKTAETFPTNAGVD 194 (444)
T ss_dssp CCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTCBE--EEEEEEHHHHHTSTTSTTSS
T ss_pred eeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCCCE--EEEEEEhhhhhhhhhhhccC
Confidence 46889999999763 5778999999999998753 2 354 568899999998643 999999876665552 125
Q ss_pred CCCEEEEeeEEEEEEcCe
Q 015600 78 PRDLILLKNVMIKKHQAE 95 (404)
Q Consensus 78 ~GDII~l~rvki~~~~g~ 95 (404)
.|+||.|+.++|+.|+|.
T Consensus 195 ~~~VV~i~~~kV~~f~G~ 212 (444)
T 4gop_C 195 EKPVLAFKGVKVGDFGGR 212 (444)
T ss_dssp SCCEEEEESCEEECTTSS
T ss_pred CCCEEEEEeEEEeecCCe
Confidence 799999999999999996
No 12
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=97.88 E-value=0.00012 Score=59.68 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=66.7
Q ss_pred eeehHhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEeeEEE
Q 015600 10 IVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMI 89 (404)
Q Consensus 10 y~~i~~~~~~~~~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~rvki 89 (404)
++.|+|+.. .+..||++|.|++...|+ .|+.+ ..+.|-|+|= .|+++++.+. ..+.+ ..||+|+|+++++
T Consensus 5 ~~kI~dl~~-~~~~v~v~~~V~~~~~~~--~~~~~-~~~~l~DeTG---~I~~t~W~~~--~~~~~-~~G~~V~i~n~~v 74 (109)
T 2kbn_A 5 LTKIVDIVE-NGQWANLKAKVIQLWENT--HESIS-QVGLLGDETG---IIKFTIWKNA--ELPLL-EQGESYLLRSVVV 74 (109)
T ss_dssp BCCTTTCCS-TTCEEEEEEEEEEEEECC--CSSEE-EEEEEECTTC---CEEEEEEGGG--CCCCC-CTTCEEEEEEEEE
T ss_pred ceEHHHCCC-CCCcEEEEEEEEEeEcCC--CCeEE-EEEEEECCCC---eEEEEEECcc--ccccc-CCCCEEEEEEEEE
Confidence 556888842 367799999999998753 34444 4589999975 2999999843 56788 8899999999999
Q ss_pred EEEcCeeEEEeecC
Q 015600 90 KKHQAELSAVFYKD 103 (404)
Q Consensus 90 ~~~~g~~~~~~~~~ 103 (404)
+.|+|++++..++.
T Consensus 75 ~~~~G~~~L~v~~~ 88 (109)
T 2kbn_A 75 GEYNDRFQVQVNKN 88 (109)
T ss_dssp EEETTEEEEEECSS
T ss_pred EEECCEEEEEECCc
Confidence 99999999988743
No 13
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=97.82 E-value=9.9e-05 Score=59.77 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=66.2
Q ss_pred ceeehHhhhhccCCEEEEEEEEEecCCceec---CCC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEE
Q 015600 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKS---QGT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILL 84 (404)
Q Consensus 9 ~y~~i~~~~~~~~~~vnv~GVV~d~~~P~~t---rGt-D~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l 84 (404)
.+++|+++ .++..+||.|+|++..+++.- .|+ -...+++|.|.|- .+.+.+|.+..+ + .+ ++||+|.+
T Consensus 4 ~~~~I~dL--~~~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG---~IrvtlW~~~a~-~-~l-~~Gdvv~i 75 (105)
T 3dm3_A 4 DTYNIGEL--SPGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG---SIRVTLWDNLTD-I-DV-GRGDYVRV 75 (105)
T ss_dssp CEECGGGC--CSSEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE---EEEEEEEGGGGG-S-CC-CTTCEEEE
T ss_pred cceEHHHC--CCCCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC---cEEEEEECcccc-c-cc-CCCCEEEE
Confidence 57899999 456889999999999987642 354 4578899999865 399999986543 4 55 79999999
Q ss_pred eeEEEEEE-cCeeEEEee
Q 015600 85 KNVMIKKH-QAELSAVFY 101 (404)
Q Consensus 85 ~rvki~~~-~g~~~~~~~ 101 (404)
+.+++.+ +|.+.+...
T Consensus 76 -~g~vk~~~~g~~eL~~g 92 (105)
T 3dm3_A 76 -RGYIREGYYGGLECTAN 92 (105)
T ss_dssp -EEEEEECTTSSEEEEEE
T ss_pred -EEEEEEccCCCEEEEeC
Confidence 8999988 457777664
No 14
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=97.69 E-value=0.00025 Score=56.45 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=63.7
Q ss_pred eehHhhhhccCCEEEEEEEEEecCCcee-cC--CC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEee
Q 015600 11 VRIKELAMHVKHKVNLLGVVLEFSIPRK-SQ--GT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKN 86 (404)
Q Consensus 11 ~~i~~~~~~~~~~vnv~GVV~d~~~P~~-tr--Gt-D~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~r 86 (404)
.+|+++ +++..+|++|.|++..+++. ++ |+ --..+++|.|+|= .|.+.+|.+.. .+ .+ ++||+|.+ +
T Consensus 3 ~kI~dl--~~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG---~I~~tlW~~~~-~~-~i-~~Gdvv~i-~ 73 (97)
T 3e0e_A 3 YKISEL--MPNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG---SIRGTLWNELA-DF-EV-KKGDIAEV-S 73 (97)
T ss_dssp ECGGGC--CTTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE---EEEEEEEGGGG-GC-CC-CTTCEEEE-E
T ss_pred eEHHHC--CCCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC---cEEEEEECCcc-cc-cc-CCCCEEEE-E
Confidence 478888 56788999999999998765 32 54 3688899999865 39999999654 44 56 89999999 8
Q ss_pred EEEEEEcCeeEEEeec
Q 015600 87 VMIKKHQAELSAVFYK 102 (404)
Q Consensus 87 vki~~~~g~~~~~~~~ 102 (404)
.+++.+.|++++...+
T Consensus 74 g~v~~~~~~~el~~g~ 89 (97)
T 3e0e_A 74 GYVKQGYSGLEISVDN 89 (97)
T ss_dssp EEEEEC--CEEEEEEE
T ss_pred EEEEEcCCeEEEEECC
Confidence 8999999998877653
No 15
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=97.62 E-value=0.00082 Score=54.37 Aligned_cols=94 Identities=21% Similarity=0.250 Sum_probs=67.0
Q ss_pred cccccccCCce-EeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChhhhccCCCCce
Q 015600 159 LSLKDISEHRY-FDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGT 237 (404)
Q Consensus 159 ~~L~di~~~~f-~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pp~G~ 237 (404)
..|+||+++.- ++++++|+.+. +.. .=-||+.-.. ....+.| + -|
T Consensus 4 ~kI~dl~pg~~~v~v~~~V~~~~-~~~------~~k~G~~~~v--~~~~l~D-----------------e-------TG- 49 (106)
T 2k75_A 4 VKIRDVSLSTPYVSVIGKITGIH-KKE------YESDGTTKSV--YQGYIED-----------------D-------TA- 49 (106)
T ss_dssp CCSTTCCTTCSEEEEEEEEEEEE-EEE------EEETTEEEEE--EEEEEEC-----------------S-------SC-
T ss_pred EEHHHcCCCCceEEEEEEEEEcc-ccc------cccCCCeeEE--EEEEEEc-----------------C-------CC-
Confidence 67999999865 99999999998 421 0113210000 0010000 0 13
Q ss_pred EEEEEecCchhhhhhccCCCCcEEEEeceEEEEeCcEEEEEEecCCceEEcCCCCh
Q 015600 238 VLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDN 293 (404)
Q Consensus 238 ~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~ 293 (404)
.+++++|+.. +++|+.|+|+|..++...|.++..+...+.|..+++.++
T Consensus 50 ~I~~tlW~~~-------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~~~~~~~~ 98 (106)
T 2k75_A 50 RIRISSFGKQ-------LQDSDVVRIDNARVAQFNGYLSLSVGDSSRIESVNVNIP 98 (106)
T ss_dssp EEEEEEESSC-------CCTTEEEEEEEEEEEEETTEEEEEECTTSEEEECCSCCC
T ss_pred eEEEEEEcCc-------cCCCCEEEEEeeEEeEECCEEEEEECCcEEEEECCCCCc
Confidence 6789999963 999999999999999999999999999999998887654
No 16
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.44 E-value=0.00082 Score=54.91 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=69.6
Q ss_pred cccccccccCCceEeEEEEEEEEEeeCC-----C----CeEEEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChh
Q 015600 157 YLLSLKDISEHRYFDLVCKVFHVSYDDS-----K----GLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLE 227 (404)
Q Consensus 157 f~~~L~di~~~~f~Dl~~qVv~~~~~~~-----~----~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (404)
| ..|+|+++++.+|+++.|+.+. +.. + ....+.|.|.|
T Consensus 7 ~-~~I~~L~~g~~v~i~~~V~~~~-~~~~~~~k~G~~~~~~~~~l~D~T------------------------------- 53 (115)
T 2k50_A 7 M-DTISKLEEGAETPVTGRVMKIS-SPRTFTTRKGREGKLANVIIADDT------------------------------- 53 (115)
T ss_dssp C-CCTTTCCTTCEEEEEEEEEEEC-CCEECCCTTSSCCEEEEEEEEETT-------------------------------
T ss_pred e-EEHHHCCCCCEeEEEEEEEECC-CceEEEcCCCCEEEEEEEEEEeCC-------------------------------
Confidence 5 6799999999999999999984 211 1 23444555543
Q ss_pred hhccCCCCceEEEEEecCchhhhhhccCCCCcEEEEeceEEEE-eCcEEEEEEecCCceEEcCC
Q 015600 228 TLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQV-SSGMWHGLLQSSSKIRLFSD 290 (404)
Q Consensus 228 ~~~~~pp~G~~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~-~~g~leG~l~~~ski~~l~~ 290 (404)
| .+++++|+..+.. .+.+++|+.|.+.|..++. ..|.++..+...+.|...++
T Consensus 54 --------G-~I~~t~w~~~~~~-~~~l~~G~vv~i~g~~v~~~f~g~~qL~~~~~~~i~~~~~ 107 (115)
T 2k50_A 54 --------G-ELRAVFWTENIKL-LKKFREGDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVLDP 107 (115)
T ss_dssp --------E-EEEEEEETTGGGG-GGTCCTTSEEEEEEEEECCCSSSSCEEEECTTCCEEEESS
T ss_pred --------C-eEEEEEeCchhhh-hhcCCCCCEEEEEeeEEccccCCeEEEEECCCceEEECCc
Confidence 3 6689999987653 4679999999999999876 67888889888888887664
No 17
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=97.41 E-value=0.0015 Score=53.81 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=65.7
Q ss_pred cccccccCCc-eEeEEEEEEEEEeeC-----CCC---eEEEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChhhh
Q 015600 159 LSLKDISEHR-YFDLVCKVFHVSYDD-----SKG---LWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETL 229 (404)
Q Consensus 159 ~~L~di~~~~-f~Dl~~qVv~~~~~~-----~~~---~~~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 229 (404)
..|+||++++ -+|+++.|+.+. +. .++ ...+.|-|-
T Consensus 3 ~~I~dL~~~~~~v~~~~~V~~~~-~~~~~~~k~G~~~~~~~~l~D~---------------------------------- 47 (119)
T 1o7i_A 3 EKVGNLKPNMESVNVTVRVLEAS-EARQIQTKNGVRTISEAIVGDE---------------------------------- 47 (119)
T ss_dssp CCGGGCCTTCSSEEEEEEEEEEC-CCEEECCTTCCEEEEEEEEEET----------------------------------
T ss_pred EEHHHCcCCCCcEEEEEEEEECC-CCeeEEecCCCEEEEEEEEEeC----------------------------------
Confidence 6799999986 799999999886 21 111 111122221
Q ss_pred ccCCCCceEEEEEecCchhhhhhccCCCCcEEEEeceEEEEeCcEEEEEEecCCceEEcCC
Q 015600 230 RNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSD 290 (404)
Q Consensus 230 ~~~pp~G~~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~g~leG~l~~~ski~~l~~ 290 (404)
-| .+++++|+..+ +.+++|+.|+++|..++...|.++..+...+.|...++
T Consensus 48 -----TG-~I~~tlW~~~~----~~~~~G~vv~i~~g~v~~~~g~~qL~i~~~~~i~~~~~ 98 (119)
T 1o7i_A 48 -----TG-RVKLTLWGKHA----GSIKEGQVVKIENAWTTAFKGQVQLNAGSKTKIAEASE 98 (119)
T ss_dssp -----TE-EEEEEEEGGGT----TCCCTTCEEEEEEEEEEEETTEEEEEECTTCEEEECCC
T ss_pred -----CC-EEEEEEECChh----hcCCCCCEEEEEeEEEEEeCCEEEEEECCCEEEEEcCC
Confidence 15 48899999754 45899999999999999999999999999999988764
No 18
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=97.39 E-value=0.0032 Score=51.08 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=66.8
Q ss_pred cccccccC-CceEeEEEEEEEEEeeCCCCeE--EEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChhhhccCCCC
Q 015600 159 LSLKDISE-HRYFDLVCKVFHVSYDDSKGLW--MLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPV 235 (404)
Q Consensus 159 ~~L~di~~-~~f~Dl~~qVv~~~~~~~~~~~--~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pp~ 235 (404)
..|+||++ +.-++++++|+.+. +..++.. .+-|=|.|
T Consensus 6 ~kI~dl~~~~~~v~v~~~V~~~~-~~~~~~~~~~~~l~DeT--------------------------------------- 45 (109)
T 2kbn_A 6 TKIVDIVENGQWANLKAKVIQLW-ENTHESISQVGLLGDET--------------------------------------- 45 (109)
T ss_dssp CCTTTCCSTTCEEEEEEEEEEEE-ECCCSSEEEEEEEECTT---------------------------------------
T ss_pred eEHHHCCCCCCcEEEEEEEEEeE-cCCCCeEEEEEEEECCC---------------------------------------
Confidence 67999987 78899999999998 5222111 11111111
Q ss_pred ceEEEEEecCchhhhhhccCCCCcEEEEeceEEEEeCcEEEEEEecCCceEEcCCC
Q 015600 236 GTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDN 291 (404)
Q Consensus 236 G~~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~g~leG~l~~~ski~~l~~~ 291 (404)
| .++.++|+.. ....+++|+.|+|+|..++...|.++..+...+.|..++++
T Consensus 46 G-~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 46 G-IIKFTIWKNA---ELPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSSIEKLSEP 97 (109)
T ss_dssp C-CEEEEEEGGG---CCCCCCTTCEEEEEEEEEEEETTEEEEEECSSSEEEECSSC
T ss_pred C-eEEEEEECcc---cccccCCCCEEEEEEEEEEEECCEEEEEECCceEEEECCCc
Confidence 2 5789999843 24689999999999999999999999999988888877653
No 19
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.26 E-value=0.001 Score=56.85 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=67.3
Q ss_pred CCcceeehHhhhhccCC-EEEEEEEEEecCCce---ec-C--C-------CceEEEEEEEeCCCCCCCeEEEEecCCCCC
Q 015600 6 NQGGIVRIKELAMHVKH-KVNLLGVVLEFSIPR---KS-Q--G-------TDYVCVLKIVDDSQQSPELLVNIFTSSIDQ 71 (404)
Q Consensus 6 ~~y~y~~i~~~~~~~~~-~vnv~GVV~d~~~P~---~t-r--G-------tD~~~t~~I~D~S~~~~gl~v~iF~~~~~~ 71 (404)
.+-.|+.|+|+. ++. .+|+.|.|++...+. +. | | .--.+++.|-|++=. |.+.+..+.
T Consensus 12 ~kp~~~kI~dL~--pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~---I~ftlW~e~--- 83 (145)
T 1wjj_A 12 RKPVFVKVEQLK--PGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC---ILFTARNDQ--- 83 (145)
T ss_dssp CCCSSCCSTTCC--TTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE---EEEEECTTH---
T ss_pred cCccceEHHHcC--CCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE---EEEEEecCC---
Confidence 455688999994 444 499999999988765 22 2 4 346788899998753 777777753
Q ss_pred CCCCCCCCCEEEEeeEEEEEEcCeeEEEeec
Q 015600 72 LPRVLSPRDLILLKNVMIKKHQAELSAVFYK 102 (404)
Q Consensus 72 LP~v~~~GDII~l~rvki~~~~g~~~~~~~~ 102 (404)
.+.+ +.||+|+|+++.++.|+|.+.+..++
T Consensus 84 ~~~l-~~Gd~v~i~na~v~~~~G~~~L~vgk 113 (145)
T 1wjj_A 84 VDLM-KPGATVILRNSRIDMFKGTMRLGVDK 113 (145)
T ss_dssp HHHT-CTTCEEEEEEEEEEEETTEEEEEECT
T ss_pred cCcC-CCCCEEEEeccEEEeECCEEEEEECC
Confidence 3345 68999999999999999999887764
No 20
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.22 E-value=0.0071 Score=51.55 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=42.0
Q ss_pred EEEEEecCchhhhhhccCCCCcEEEEeceEEEEeCcEEEEEEecCCceEEcCC
Q 015600 238 VLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSD 290 (404)
Q Consensus 238 ~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~g~leG~l~~~ski~~l~~ 290 (404)
++++++|+..+ +.+++||.|+|+|..+++..|.++..+...++|..+++
T Consensus 74 ~I~ftlW~e~~----~~l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~e 122 (145)
T 1wjj_A 74 CILFTARNDQV----DLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGA 122 (145)
T ss_dssp EEEEEECTTHH----HHTCTTCEEEEEEEEEEEETTEEEEEECTTCCBCCCSC
T ss_pred EEEEEEecCCc----CcCCCCCEEEEeccEEEeECCEEEEEECCCEEEEECCC
Confidence 78999999744 34889999999999999999999998888888876654
No 21
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.61 E-value=0.019 Score=46.18 Aligned_cols=93 Identities=14% Similarity=0.054 Sum_probs=59.6
Q ss_pred cccccccccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChhhhccCCCCc
Q 015600 157 YLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVG 236 (404)
Q Consensus 157 f~~~L~di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pp~G 236 (404)
+ ..|+||+++..+|+++.|+.+. +. -...=.||++-.-. ...+.| + -|
T Consensus 5 ~-~~I~dL~~~~~v~v~g~V~~~~-~~----r~~~~~~G~~~~v~--~~~l~D-----------------~-------TG 52 (105)
T 3dm3_A 5 T-YNIGELSPGMTATFEGEVISAL-PI----KEFKRADGSIGKLK--SFIVRD-----------------E-------TG 52 (105)
T ss_dssp E-ECGGGCCSSEEEEEEEEEEEEE-EE----EEEECTTSCEEEEE--EEEEEE-----------------T-------TE
T ss_pred c-eEHHHCCCCCeEEEEEEEEECC-Cc----eEEEcCCCCeeEEE--EEEEEC-----------------C-------CC
Confidence 5 7899999999999999999887 31 01100122211010 000000 0 14
Q ss_pred eEEEEEecCchhhhhhccCCCCcEEEEeceEEEEe-CcEEEEEEecCCceE
Q 015600 237 TVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS-SGMWHGLLQSSSKIR 286 (404)
Q Consensus 237 ~~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~-~g~leG~l~~~ski~ 286 (404)
.+++++|+..+.. .+++|+.|.| |-.++.. +|-+|..+...+.|.
T Consensus 53 -~IrvtlW~~~a~~---~l~~Gdvv~i-~g~vk~~~~g~~eL~~g~~~~i~ 98 (105)
T 3dm3_A 53 -SIRVTLWDNLTDI---DVGRGDYVRV-RGYIREGYYGGLECTANYVEILK 98 (105)
T ss_dssp -EEEEEEEGGGGGS---CCCTTCEEEE-EEEEEECTTSSEEEEEEEEEEEE
T ss_pred -cEEEEEECccccc---ccCCCCEEEE-EEEEEEccCCCEEEEeCCceEEE
Confidence 6899999987652 8999999999 8888884 556677666555443
No 22
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=95.94 E-value=0.058 Score=42.51 Aligned_cols=91 Identities=12% Similarity=0.036 Sum_probs=55.2
Q ss_pred cccccccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChhhhccCCCCceE
Q 015600 159 LSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTV 238 (404)
Q Consensus 159 ~~L~di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pp~G~~ 238 (404)
..|+|++++..+++++.|+.+. +. -...--||++-.-. ...+.| + -| .
T Consensus 3 ~kI~dl~~g~~v~i~~~V~~~~-~~----r~~~~~~G~~~~v~--~~~l~D-----------------e-------TG-~ 50 (97)
T 3e0e_A 3 YKISELMPNLSGTINAEVVTAY-PK----KEFSRKDGTKGQLK--SLFLKD-----------------D-------TG-S 50 (97)
T ss_dssp ECGGGCCTTEEEEEEEEEEEEC-CC----EEEC----CCEEEE--EEEEEE-----------------T-------TE-E
T ss_pred eEHHHCCCCCcEEEEEEEEECC-Cc----eEEEcCCCCeeEEE--EEEEEC-----------------C-------CC-c
Confidence 4699999999999999999887 31 11111233211110 010000 0 14 8
Q ss_pred EEEEecCchhhhhhccCCCCcEEEEeceEEEEeCcEEEEEEecCCce
Q 015600 239 LRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKI 285 (404)
Q Consensus 239 l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~g~leG~l~~~ski 285 (404)
+++++|+..+.. .+++||.|.+ |=.++...|.+|..+...+.|
T Consensus 51 I~~tlW~~~~~~---~i~~Gdvv~i-~g~v~~~~~~~el~~g~~~~i 93 (97)
T 3e0e_A 51 IRGTLWNELADF---EVKKGDIAEV-SGYVKQGYSGLEISVDNIGII 93 (97)
T ss_dssp EEEEEEGGGGGC---CCCTTCEEEE-EEEEEEC--CEEEEEEEEEEE
T ss_pred EEEEEECCcccc---ccCCCCEEEE-EEEEEEcCCeEEEEECCCcEE
Confidence 899999976642 7999999999 667777666677666555544
No 23
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.084 Score=42.84 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=67.4
Q ss_pred cccccccCCce-EeEEEEEEEEEeeCCCCeEEEEEEcCC-CCCCCCCCCCCCCccCCCCCccccCCCCChhhhccCCCCc
Q 015600 159 LSLKDISEHRY-FDLVCKVFHVSYDDSKGLWMLFVWDGT-DVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVG 236 (404)
Q Consensus 159 ~~L~di~~~~f-~Dl~~qVv~~~~~~~~~~~~L~VwDgT-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pp~G 236 (404)
.+|++|+++.- ..+.++|+++. +. +.|-.. +.-.+ ++..+ ..+ -|
T Consensus 5 ~~Is~L~p~~~~w~I~~rV~~k~-~~-------r~~~~~~~~g~~-~~~~L-----------------~De-------~G 51 (114)
T 1ynx_A 5 FAIEQLSPYQNVWTIKARVSYKG-EI-------KTWHNQRGDGKL-FNVNF-----------------LDT-------SG 51 (114)
T ss_dssp CCGGGCCTTTCCCEEEEEEEEEE-EE-------EEEECSSCEEEE-EEEEE-----------------EET-------TE
T ss_pred EEHHHCCCCCCceEEEEEEEEec-cc-------eEEecCCCCceE-EEEEE-----------------ECC-------CC
Confidence 68999998764 89999999887 31 111100 00000 11100 000 27
Q ss_pred eEEEEEecCchhhhhhccCCCCcEEEEeceEEEEe-------CcEEEEEEecCCceEEcCCC
Q 015600 237 TVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS-------SGMWHGLLQSSSKIRLFSDN 291 (404)
Q Consensus 237 ~~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~-------~g~leG~l~~~ski~~l~~~ 291 (404)
.+++++|...+......+++|+|+.|.|-+++.. .+-.|-.|..++.|...+++
T Consensus 52 -~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~ 112 (114)
T 1ynx_A 52 -EIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE 112 (114)
T ss_dssp -EEEEEECHHHHHHHHHHSCSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESCCC
T ss_pred -eEEEEECHHHHHHHHhhcccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECCCC
Confidence 8899999987765567899999999999999983 34678899999988876653
No 24
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=94.98 E-value=0.2 Score=47.48 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=61.7
Q ss_pred ccccccccccCCceEeEEEEEEEEEee---C-CCCeEEEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChhhhcc
Q 015600 156 DYLLSLKDISEHRYFDLVCKVFHVSYD---D-SKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRN 231 (404)
Q Consensus 156 ~f~~~L~di~~~~f~Dl~~qVv~~~~~---~-~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 231 (404)
+| ..|++++.++.+|+++-|+..... . .+-..+|.++|-+.
T Consensus 5 ~y-~~l~~l~~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~---------------------------------- 49 (294)
T 1xjv_A 5 IY-TPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN---------------------------------- 49 (294)
T ss_dssp CC-CCGGGCCSSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC----------------------------------
T ss_pred eE-EEHHHhhCCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCC----------------------------------
Confidence 46 789999999999999999977621 1 23468888888430
Q ss_pred CCCCceEEEEEecCchhhhhhccC-CCCcEEEEeceEEEEeCcEEEEEEe
Q 015600 232 FFPVGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQ 280 (404)
Q Consensus 232 ~pp~G~~l~V~~~~~~~~~~~~~~-k~g~wv~l~Nv~~k~~~g~leG~l~ 280 (404)
.| |+|.++.++.+. ...+ ++||.|+|+|++++.+.|.+.|...
T Consensus 50 ---~g--l~v~iF~~~~~~-LP~v~~~GDII~l~~vki~~~~g~~~~v~~ 93 (294)
T 1xjv_A 50 ---VK--LTCLLFSGNYEA-LPIIYKNGDIVRFHRLKIQVYKKETQGITS 93 (294)
T ss_dssp ---CE--EEEEEEESSGGG-SCCCCSTTCEEEEEEEEEEEETTEEEEEEE
T ss_pred ---CC--EEEEEECCChHH-CCCCCCCCCEEEEEEEEEEEECCeEEEEcc
Confidence 02 456666655543 5656 9999999999999998888877543
No 25
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=94.60 E-value=1.8 Score=44.08 Aligned_cols=105 Identities=12% Similarity=0.056 Sum_probs=68.5
Q ss_pred ccccccccc--cCCceEeEEEEEEEEEe--eC--CCCeEEEEEEcCCCC-CCCCCCCCCCCccCCCCCccccCCCCChhh
Q 015600 156 DYLLSLKDI--SEHRYFDLVCKVFHVSY--DD--SKGLWMLFVWDGTDV-PPLSIPGKLEDEEHNPLPLHIESSPLDLET 228 (404)
Q Consensus 156 ~f~~~L~di--~~~~f~Dl~~qVv~~~~--~~--~~~~~~L~VwDgT~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 228 (404)
.| ..|+++ +.++.+|+++-|+.... .. .+-..+|.|+|-+-+ +...+ .| +.
T Consensus 37 ~y-~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~---------~G---------l~--- 94 (495)
T 1jb7_A 37 EY-VELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKG---------AG---------DA--- 94 (495)
T ss_dssp CB-CCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTS---------SC---------SC---
T ss_pred cc-EEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccc---------cc---------cc---
Confidence 47 889988 47999999999997652 21 234789999996533 11000 00 10
Q ss_pred hccCCCCceEEEEEecCchhhhhhccC-CCCcEEEEeceEEEEeCcEEEEEEecC--CceEEcCC
Q 015600 229 LRNFFPVGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQSS--SKIRLFSD 290 (404)
Q Consensus 229 ~~~~pp~G~~l~V~~~~~~~~~~~~~~-k~g~wv~l~Nv~~k~~~g~leG~l~~~--ski~~l~~ 290 (404)
...+.|.+..++.+. ...+ ++||.|+|+|++++.+.|...|..... +.+.+.+.
T Consensus 95 -------~~~~~v~iF~~~~e~-LP~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~ 151 (495)
T 1jb7_A 95 -------SDYATLVLYAKRFED-LPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFST 151 (495)
T ss_dssp -------BCCEEEEEEESSGGG-SCCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECS
T ss_pred -------cCceEEEEECCChHH-CCCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeC
Confidence 013356566554443 5666 699999999999999999888877654 45555543
No 26
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.012 Score=47.97 Aligned_cols=81 Identities=11% Similarity=0.141 Sum_probs=63.1
Q ss_pred ceeehHhhhhccCC-EEEEEEEEEecCCcee---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEE
Q 015600 9 GIVRIKELAMHVKH-KVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLIL 83 (404)
Q Consensus 9 ~y~~i~~~~~~~~~-~vnv~GVV~d~~~P~~---trGtD~~~t~~I~D~S~~~~gl~v~iF~~~~~~L-P~v~~~GDII~ 83 (404)
.+++|+++ .++. ..++.|-|+....++. .+|.-..+++.|.|++- .|.+.+|.+..+.+ +.+ ++|+++.
T Consensus 3 ~~~~Is~L--~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~f~~~l-~eG~vy~ 76 (114)
T 1ynx_A 3 PIFAIEQL--SPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG---EIRATAFNDFATKFNEIL-QEGKVYY 76 (114)
T ss_dssp CBCCGGGC--CTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE---EEEEEECHHHHHHHHHHS-CSSSEEE
T ss_pred ceEEHHHC--CCCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC---eEEEEECHHHHHHHHhhc-ccCcEEE
Confidence 57899999 4544 5899999998776532 24667789999999975 49999999755544 445 8999999
Q ss_pred EeeEEEEEEcCe
Q 015600 84 LKNVMIKKHQAE 95 (404)
Q Consensus 84 l~rvki~~~~g~ 95 (404)
+.+.+|+.-++.
T Consensus 77 Is~~~V~~a~~~ 88 (114)
T 1ynx_A 77 VSKAKLQPAKPQ 88 (114)
T ss_dssp EESCEEEECCTT
T ss_pred ECCcEEEECCCC
Confidence 999999986554
No 27
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=94.44 E-value=0.31 Score=43.01 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=58.1
Q ss_pred cccccCCceEeEEEEEEEEEe--eC---C-CCeEEEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChhhhccCCC
Q 015600 161 LKDISEHRYFDLVCKVFHVSY--DD---S-KGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFP 234 (404)
Q Consensus 161 L~di~~~~f~Dl~~qVv~~~~--~~---~-~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pp 234 (404)
|.+++.++.+|+++-|+.... .. . +-..+|.++|=+- ..
T Consensus 36 l~~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~------~~----------------------------- 80 (187)
T 1qzg_A 36 QELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTC------DT----------------------------- 80 (187)
T ss_dssp TSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTS------CT-----------------------------
T ss_pred HhhccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCC------CC-----------------------------
Confidence 456688999999999986652 22 1 3468899999431 00
Q ss_pred CceEEEEEecCchhhhhhccC-CCCcEEEEeceEEEEeCcEEEEEEecC
Q 015600 235 VGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQSS 282 (404)
Q Consensus 235 ~G~~l~V~~~~~~~~~~~~~~-k~g~wv~l~Nv~~k~~~g~leG~l~~~ 282 (404)
.+..|.|.+..+..+. ...+ ++||.|+|+|++++.++|...|.....
T Consensus 81 ~~~gL~v~iF~~~~e~-LP~V~~~GDIIlL~rvkiq~~~g~~~~v~~~~ 128 (187)
T 1qzg_A 81 SSIGLQIHLFSKQGND-LPVIKQVGQPLLLHQITLRSYRDRTQGLSKDQ 128 (187)
T ss_dssp TSCCEEEEEEESSSSC-SCCCCSTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCceEEEEECCChhh-CCCCCCCCCEEEEEEEEEEEECCeEEEEEcCc
Confidence 0112455555544432 4555 889999999999999998888865553
No 28
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=94.27 E-value=0.45 Score=35.72 Aligned_cols=87 Identities=23% Similarity=0.221 Sum_probs=68.7
Q ss_pred ehHhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecC-CCCCCCCCCCCCCEEEEeeEEEE
Q 015600 12 RIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTS-SIDQLPRVLSPRDLILLKNVMIK 90 (404)
Q Consensus 12 ~i~~~~~~~~~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~~gl~v~iF~~-~~~~LP~v~~~GDII~l~rvki~ 90 (404)
-|++++....+...|.+-|+|... +|--+.++|.|.|+.. .++|.||-+ .-|.--.. ++..--.+..+.-|
T Consensus 3 lisevlktskqylsvlaqvvdiqs------sdknirlkicdnscnq-elkvvifpdlcyewrdkf-sinkwyyfnefvrq 74 (109)
T 3u4z_A 3 LISEVLKTSKQYLSVLAQVVDIQS------SDKNIRLKICDNSCNQ-ELKVVIFPDLCYEWRDKF-SINKWYYFNEFVRQ 74 (109)
T ss_dssp CHHHHTTCCCSEEEEEEEEEEEEC------CSSCEEEEEECSSCSS-CEEEEECTTHHHHHTTTC-CTTCEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhc------CCCceEEEeecccccc-eeEEEEchhHHHHHHhhc-chhhhhhHHHHHHH
Confidence 367888778889999999999753 5677899999999974 599999975 22444455 77888899999999
Q ss_pred EEcCeeEEEeecCceEE
Q 015600 91 KHQAELSAVFYKDSSSF 107 (404)
Q Consensus 91 ~~~g~~~~~~~~~~ss~ 107 (404)
.||++.++-.+-. ||.
T Consensus 75 iyndevqlknnih-ssi 90 (109)
T 3u4z_A 75 IYNDEVQLKNNIH-SSI 90 (109)
T ss_dssp ESSSCEEEECCTT-CEE
T ss_pred HhhhHHhHhhhhh-hhh
Confidence 9999999887654 443
No 29
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=93.92 E-value=0.64 Score=49.15 Aligned_cols=152 Identities=17% Similarity=0.162 Sum_probs=97.5
Q ss_pred eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEeeEEEEEEcC-----eeEEEeecCceEEEEEeCCCCCCC
Q 015600 44 YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQA-----ELSAVFYKDSSSFALFDGNSGSNL 118 (404)
Q Consensus 44 ~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~rvki~~~~g-----~~~~~~~~~~ss~~vf~~~~~~~~ 118 (404)
=.++++|+|-.-.....-++|-+|..+ +....+.|.++++.++.....++ .+++.+.+. |.|---+..
T Consensus 511 p~~klRV~d~~~~~k~~iLSIW~P~ed-l~s~L~EG~~y~iy~L~~s~s~~~~~~~~lqLtAtk~-T~~~~L~~~----- 583 (738)
T 1miu_A 511 TVWKLRVTSYKKKEKSALLSIWRPSSD-LSSLLTEGKRYRIYHLAVSKSKSKFERPSIQLTATKR-TQYQQLPVS----- 583 (738)
T ss_dssp CEEEEEEEESSSSCCCEEEEEESCCHH-HHHHCCSSCEEEEEEECCCCCCCSSSCCSCEEEEEEE-EEEEEECCC-----
T ss_pred eeEEEEEEeccCCCceEEEEEeCCChH-HHhhccCCcEEEEEEeeccCCCccCccceEEEeeccc-ceeEECCcc-----
Confidence 356788888554445688899998755 44434889999999998876654 356666533 666522211
Q ss_pred CCCccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCccccccccc---ccCCceEeEEEEEEEEEeeCCCCeEEEEEEcC
Q 015600 119 LPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKD---ISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDG 195 (404)
Q Consensus 119 ~P~~~s~~~~~~~~~e~~~v~~Lr~w~~~~~~~~~~~~f~~~L~d---i~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDg 195 (404)
++. |.. ..++.... .| ..|.+ ....+.||++|-||.|- ...+..-.+|+.|+
T Consensus 584 -------------~~~------~~~--~~~pR~~~--~~-~~l~~~~f~p~~~EvDivG~Vv~v~-~~~~~~~~vylsD~ 638 (738)
T 1miu_A 584 -------------SET------LLQ--VYQPRESL--HF-SRLSDPAFQPPCSEVDVVGVVVSVV-KPIGLAPLVYLSDE 638 (738)
T ss_dssp -------------HHH------HTT--TCCCCCBC--CS-GGGGSSSCCTTTTEEEEEEEEEEEE-CCTTSCCEEEEECS
T ss_pred -------------hhh------hcc--ccCCccee--eH-HHhcCccccCCCCceeEEEEEEEEc-ccCcccceEEEEcC
Confidence 100 000 01111111 14 44444 45689999999999997 43455578899885
Q ss_pred CCCCCCCCCCCCCCccCCCCCccccCCCCChhhhccCCCCceEEEEEecCchhhhhhccCCCCcEEEEeceEEEE
Q 015600 196 TDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQV 270 (404)
Q Consensus 196 T~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pp~G~~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~ 270 (404)
.-| .|-|.+|.... .+ +++|..|.+.|++.+.
T Consensus 639 ~~n---------------------------------------ll~Ikf~~~l~---eD-~~~~~~va~sNL~~r~ 670 (738)
T 1miu_A 639 CLN---------------------------------------LLVVKFGIDLN---ED-IKPRVLIAASNLQCQP 670 (738)
T ss_dssp SSC---------------------------------------EEEEEESSCCC---SC-CCSSCEEEEEEEECCS
T ss_pred CCc---------------------------------------EEEEEEecCch---hh-CccccEEEEeeeEeec
Confidence 411 34567787644 24 9999999999999887
No 30
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=93.71 E-value=0.18 Score=44.31 Aligned_cols=72 Identities=10% Similarity=-0.005 Sum_probs=53.8
Q ss_pred CccccHHHHhcCC----CCCceEEEEEEEEeecCCCccccccC--------------------------CCCcEEEEEEE
Q 015600 332 VASVTLMKIATQL----QGNVRCCCIVRVVSIHPFQAEHYSSP--------------------------NGSSEYTMKLT 381 (404)
Q Consensus 332 ~p~ttL~~IL~~~----~~~~kyr~~VRVV~~~P~~l~df~~~--------------------------~~~~~~~f~L~ 381 (404)
.+..||+||.... .-|.-|.+.+.|+.+-+.+.-=-|+| +-.|.|.+.+.
T Consensus 5 ~~~kti~qi~~~~lg~~~k~~~f~v~atI~~i~~d~~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry~l~~~ 84 (181)
T 1l1o_C 5 TNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 84 (181)
T ss_dssp CCBCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEEEEEEE
T ss_pred cceEEHHHHhhhccCCCCCCcEEEEEEEEEEEeCCCEEECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEEEEEEE
Confidence 3567899998621 24556999999998877543211222 13577889999
Q ss_pred EeCCCceEEEEEeccccccccc
Q 015600 382 LEDPTARIHALLCGKEWVRFQL 403 (404)
Q Consensus 382 leD~t~~~~~~v~~~da~~f~~ 403 (404)
|.|.||.+.+.++++.|+.+||
T Consensus 85 i~D~Tg~~~~t~F~~~ae~ilG 106 (181)
T 1l1o_C 85 IADFQENQWVTCFQESAEAILG 106 (181)
T ss_dssp EECSSCEEEEEEEHHHHHHHHS
T ss_pred EEeCCCCEEEEEEhHHHHHHhC
Confidence 9999999999999999999986
No 31
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=93.32 E-value=0.68 Score=38.54 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=50.7
Q ss_pred CEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCC----CCCCCCCCCCEEEEeeEEEEEEcCeeE
Q 015600 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID----QLPRVLSPRDLILLKNVMIKKHQAELS 97 (404)
Q Consensus 22 ~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~~gl~v~iF~~~~~----~LP~v~~~GDII~l~rvki~~~~g~~~ 97 (404)
..|.++|+|..... + .=.++++|-|.|= .|.+.++....+ ..+.+ .+|++|++..- ++.|+|+.+
T Consensus 37 ~~V~iVG~V~~~~~-----~-~~~~~~~ldD~TG---~I~~~~W~~~~~~~~~~~~~~-~~g~yVrV~G~-v~~f~g~~q 105 (136)
T 4gop_B 37 GQLTFVAVVRNISR-----N-ATNVAYSVEDGTG---QIEVRQWLDSSSDDSSKASEI-RNNVYVRVLGT-LKSFQNRRS 105 (136)
T ss_dssp CEEEEEEEEEEEEE-----C-SSEEEEEEECSSC---EEEEEEECC--------CCSC-CTTCEEEEEEE-EEEETTEEE
T ss_pred EEEEEEEEEEEEEe-----c-CCeEEEEEECCCC---CEEEEEecccCCccccccccc-CCCCEEEEEEE-EEEeCCEEE
Confidence 35899999999853 1 2367889999765 299999976443 46677 79999999765 899999988
Q ss_pred EEee
Q 015600 98 AVFY 101 (404)
Q Consensus 98 ~~~~ 101 (404)
....
T Consensus 106 i~~~ 109 (136)
T 4gop_B 106 ISSG 109 (136)
T ss_dssp EEES
T ss_pred EEEE
Confidence 7653
No 32
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=92.98 E-value=0.99 Score=37.30 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=49.3
Q ss_pred CEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCCCCCCCCEEEEeeEEEEEEcCeeEE
Q 015600 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPRVLSPRDLILLKNVMIKKHQAELSA 98 (404)
Q Consensus 22 ~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~~gl~v~iF~~~~~---~LP~v~~~GDII~l~rvki~~~~g~~~~ 98 (404)
..|.+.|+|.+... .+-.++++|-|.|-. .|.+.++....+ ....+ ..||.|++..- ++.|+|+.+.
T Consensus 32 ~~V~iVG~V~~~~~------~~~~~~~~ldD~TG~--~I~~~~W~~~~~~~~~~~~~-~~g~yVrV~G~-l~~f~g~~qi 101 (132)
T 3kdf_D 32 SQVTIVGIIRHAEK------APTNIVYKIDDMTAA--PMDVRQWVDTDDTSSENTVV-PPETYVKVAGH-LRSFQNKKSL 101 (132)
T ss_dssp CEEEEEEEEEEEEE------CSSEEEEEEECSSSS--CEEEEEEC---------CCC-CTTCEEEEEEE-EEEETTEEEE
T ss_pred EEEEEEEEEEEEEE------cCCeEEEEEECCCCC--EEEEEEEccCCCcccccccc-cCCCEEEEEEE-EEeECCEEEE
Confidence 35889999999852 234678899997642 399999976432 24556 78999999765 8899999876
Q ss_pred Eee
Q 015600 99 VFY 101 (404)
Q Consensus 99 ~~~ 101 (404)
...
T Consensus 102 ~~~ 104 (132)
T 3kdf_D 102 VAF 104 (132)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 33
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=91.37 E-value=0.19 Score=44.95 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=57.6
Q ss_pred CcceeehHhhhhc--c----CCEEEEEEEEEecCCceecC-CCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 015600 7 QGGIVRIKELAMH--V----KHKVNLLGVVLEFSIPRKSQ-GTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPR 79 (404)
Q Consensus 7 ~y~y~~i~~~~~~--~----~~~vnv~GVV~d~~~P~~tr-GtD~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~G 79 (404)
...+..|.+++.. . ....-++|||++-..|+.+. |+.|+ ..+|.|-.-....+.+-+|.+..+.+=.+ .+|
T Consensus 35 ~~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~gk~y~-~w~l~DL~~~~~~V~lfLFg~a~~~~~k~-~~G 112 (200)
T 3ebe_A 35 GRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNNGKTFS-IWRLNDLKDLDKYISLFLFGDVHKEHWKT-DQG 112 (200)
T ss_dssp TCEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-------CCE-EEEEECSSSTTCCEEEEECHHHHHHHTTC-CTT
T ss_pred CCeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCCCCeEE-EEEEEecCCCCcEEEEEEechHHHHhcCc-CCc
Confidence 3467888888652 1 23566999999999998874 66664 68998877655569999998755555567 789
Q ss_pred CEEEEeeEEEE
Q 015600 80 DLILLKNVMIK 90 (404)
Q Consensus 80 DII~l~rvki~ 90 (404)
+||-|=|-.+-
T Consensus 113 ~ViaiLNP~i~ 123 (200)
T 3ebe_A 113 TVIGLLNANPM 123 (200)
T ss_dssp EEEEEESCEEC
T ss_pred eEEEEECCEEc
Confidence 99999999874
No 34
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=91.20 E-value=0.42 Score=40.40 Aligned_cols=83 Identities=11% Similarity=0.150 Sum_probs=58.5
Q ss_pred ceeehHhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCC--------------CC------CeEEEEecCC
Q 015600 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQ--------------SP------ELLVNIFTSS 68 (404)
Q Consensus 9 ~y~~i~~~~~~~~~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~--------------~~------gl~v~iF~~~ 68 (404)
.|.-|+|+ ..++.++++|=|+..- . .+ -++++.++|=+.. |. .|.|.+|-++
T Consensus 4 kf~llkdv--~~~~F~Dl~~qVv~~~--~--~~--~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~h 75 (143)
T 4hik_A 4 SFSLLSQI--TPHQRCSFYAQVIKTW--Y--SD--KNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEH 75 (143)
T ss_dssp CCCCGGGC--CSSCEEEEEEEEEEEE--E--CS--SCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHH
T ss_pred hhhhHHhC--CCCCeEEEEEEEEEEE--c--CC--CeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcH
Confidence 45668888 5799999999999832 2 22 5678889885543 11 3899998776
Q ss_pred CCCCCC-CCCCCCEEEEeeEEEEEEcCe-eEEEe
Q 015600 69 IDQLPR-VLSPRDLILLKNVMIKKHQAE-LSAVF 100 (404)
Q Consensus 69 ~~~LP~-v~~~GDII~l~rvki~~~~g~-~~~~~ 100 (404)
.+..=. + ++||+|+|+|++|+.-.+. +.|.-
T Consensus 76 a~~ar~~l-k~Gd~v~L~Nv~iK~~~~g~LEG~l 108 (143)
T 4hik_A 76 DFYCRNYI-KEGDYVVMKNVRTKIDHLGYLECIL 108 (143)
T ss_dssp HHHHTTTC-CTTCEEEEEEEEEEECTTSCEEEEE
T ss_pred HHHHHhhC-CCCCEEEEEeEEEeecCCceEEEEE
Confidence 544434 5 7899999999999877543 44433
No 35
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=90.88 E-value=2.3 Score=35.25 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=68.9
Q ss_pred eehHhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecC-CCCCCCCCCCCCCEEEEeeEEE
Q 015600 11 VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTS-SIDQLPRVLSPRDLILLKNVMI 89 (404)
Q Consensus 11 ~~i~~~~~~~~~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~~gl~v~iF~~-~~~~LP~v~~~GDII~l~rvki 89 (404)
.-|++++....+...|.+-|+|... +|--+.++|.|.||.. .++|.||-+ .-|.--.. ++..--.+..+.-
T Consensus 120 llisevlktskqylsvlaqvvdiqs------sdknirlkicdnscnq-elkvvifpdlcyewrdkf-sinkwyyfnefvr 191 (213)
T 3u58_A 120 LLISEVLKTSKQYLSVLAQVVDIQS------SDKNIRLKICDNSCNQ-ELKVVIFPDLCYEWRDKF-SINKWYYFNEFVR 191 (213)
T ss_dssp BCHHHHTTCCCSEEEEEEEEEEEEE------CSSCEEEEEECTTCSC-CEEEEECTTTTGGGTTCC-CTTCEEEEEEEEE
T ss_pred eehHHHHHHhHHHHHHHHHhhcccc------CCCceEEEeecccccc-eeEEEEchhHhhHhhhhc-chhhhhhHHHHHH
Confidence 4578888878889999999999753 5667899999999974 599999975 33555555 7888889999999
Q ss_pred EEEcCeeEEEeecC
Q 015600 90 KKHQAELSAVFYKD 103 (404)
Q Consensus 90 ~~~~g~~~~~~~~~ 103 (404)
|.||++.++-.+-.
T Consensus 192 qiyndevqlknnih 205 (213)
T 3u58_A 192 QIYNDEVQLKNNIH 205 (213)
T ss_dssp CCSSSSCEEECCTT
T ss_pred HHhhhhhhhhhhhh
Confidence 99999998877644
No 36
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=90.09 E-value=2.2 Score=39.71 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=56.9
Q ss_pred eeehHhhhhcc--C----------CEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCC
Q 015600 10 IVRIKELAMHV--K----------HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPR 74 (404)
Q Consensus 10 y~~i~~~~~~~--~----------~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~~gl~v~iF~~~~~---~LP~ 74 (404)
=+.|+++++.. + ..|.++|+|+.... ++ =.++++|-|.+=. -|.+.++....+ ....
T Consensus 48 PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~-----~~-~~~~~~L~D~TG~--~I~~k~W~~~~~~~~~~~~ 119 (270)
T 2pi2_A 48 PCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEK-----AP-TNIVYKIDDMTAA--PMDVRQWVDTDDTSSENTV 119 (270)
T ss_dssp ECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEE-----CS-SEEEEEEECSSSS--CEEEEEECC-------CCC
T ss_pred EEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEe-----cc-ceEEEEEECCCCC--EEEEEEEcCcCcccchhhc
Confidence 35678887631 1 25889999998642 23 3568899997641 299999975432 3445
Q ss_pred CCCCCCEEEEeeEEEEEEcCeeEEEee
Q 015600 75 VLSPRDLILLKNVMIKKHQAELSAVFY 101 (404)
Q Consensus 75 v~~~GDII~l~rvki~~~~g~~~~~~~ 101 (404)
+ ..|++|+++. +++.|+|+.|+...
T Consensus 120 ~-~~G~yVrV~G-~v~~f~g~~qi~i~ 144 (270)
T 2pi2_A 120 V-PPETYVKVAG-HLRSFQNKKSLVAF 144 (270)
T ss_dssp C-CTTCEEEEEE-EEEEETTEEEEEEE
T ss_pred C-CCCCEEEEEE-EEEecCCeeEEEEE
Confidence 5 7899999975 88899999887764
No 37
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=79.42 E-value=0.51 Score=41.17 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=28.8
Q ss_pred CcEEEEEEEEeCCCceEEEEEeccccccccc
Q 015600 373 SSEYTMKLTLEDPTARIHALLCGKEWVRFQL 403 (404)
Q Consensus 373 ~~~~~f~L~leD~t~~~~~~v~~~da~~f~~ 403 (404)
.|.|.+.+.|.|.||.+.+-++++.|+.|||
T Consensus 72 ~~RYil~~~i~D~TG~~wvt~F~e~ae~ilG 102 (172)
T 3u50_C 72 QVHLMLRAFVQDSTGTIPVMIFDQQSSQLIN 102 (172)
T ss_dssp EEEECEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred eEEEEEEEEEEeCCCCEEEEEEhHHHHHHhC
Confidence 5778899999999999999999999999986
No 38
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=77.12 E-value=33 Score=29.11 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=23.5
Q ss_pred CCceEeEEEEEEEEEeeCCCCeEEEEEEcCCC
Q 015600 166 EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTD 197 (404)
Q Consensus 166 ~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~ 197 (404)
+=+++++++-|+++. + ...+..+.|=|||+
T Consensus 46 PI~~V~IvGiVv~~~-~-~~~~~~ytIDD~TG 75 (159)
T 3kf6_A 46 PIRWIQIVGYIAAID-I-YEGKHVLTVDDCSG 75 (159)
T ss_dssp EECEEEEEEEEEEEE-E-ETTEEEEEEECSSS
T ss_pred EEEEEEEEEEEEEEE-E-eCCEEEEEEecCCC
Confidence 336889999999998 5 45677888888874
No 39
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=73.96 E-value=6.9 Score=31.47 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCEEEEee-------EEEEEEcCeeEEEeecC-ceEEEEEe
Q 015600 70 DQLPRVLSPRDLILLKN-------VMIKKHQAELSAVFYKD-SSSFALFD 111 (404)
Q Consensus 70 ~~LP~v~~~GDII~l~r-------vki~~~~g~~~~~~~~~-~ss~~vf~ 111 (404)
.++|.+ .+||+|.+|= =++|.|.|-.-+.-+.+ .++|.|=.
T Consensus 14 ~~iP~f-~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRk 62 (114)
T 3r8s_P 14 QDVPSF-RPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRK 62 (114)
T ss_dssp SCCCCC-CTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEE
T ss_pred cCCCcc-CCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEE
Confidence 579999 8999999973 24667777665555544 36777633
No 40
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=73.32 E-value=35 Score=27.63 Aligned_cols=81 Identities=12% Similarity=0.058 Sum_probs=49.6
Q ss_pred ceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChhhhccCCCCceEEEEEecCch
Q 015600 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSY 247 (404)
Q Consensus 168 ~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pp~G~~l~V~~~~~~ 247 (404)
+.+.+++.|+.+. + ....+.+.+-|||++ . |.+..|...
T Consensus 32 ~~V~iVG~V~~~~-~-~~~~~~~~ldD~TG~-~--------------------------------------I~~~~W~~~ 70 (132)
T 3kdf_D 32 SQVTIVGIIRHAE-K-APTNIVYKIDDMTAA-P--------------------------------------MDVRQWVDT 70 (132)
T ss_dssp CEEEEEEEEEEEE-E-CSSEEEEEEECSSSS-C--------------------------------------EEEEEEC--
T ss_pred EEEEEEEEEEEEE-E-cCCeEEEEEECCCCC-E--------------------------------------EEEEEEccC
Confidence 5789999999997 5 568899999999972 1 122334322
Q ss_pred hh--hhhccCCCCcEEEEeceEEEEeCcEEEEEEecCCceEEcCCCCh
Q 015600 248 EN--FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDN 293 (404)
Q Consensus 248 ~~--~~~~~~k~g~wv~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~ 293 (404)
+. .....+++|++|+...- ++..+|..+... .+|+.+++.+.
T Consensus 71 ~~~~~~~~~~~~g~yVrV~G~-l~~f~g~~qi~~---~~ir~v~d~Ne 114 (132)
T 3kdf_D 71 DDTSSENTVVPPETYVKVAGH-LRSFQNKKSLVA---FKIMPLEDMNE 114 (132)
T ss_dssp -------CCCCTTCEEEEEEE-EEEETTEEEEEE---EEEEECSSTHH
T ss_pred CCcccccccccCCCEEEEEEE-EEeECCEEEEEE---EEEEEcCCccH
Confidence 21 11456889999997644 444555443321 16666766555
No 41
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=71.54 E-value=6.5 Score=30.77 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=26.5
Q ss_pred CCCCCCCCCEEEEeeE------EEEEEcCeeEEEeecC-ceEEEEEeCCC
Q 015600 72 LPRVLSPRDLILLKNV------MIKKHQAELSAVFYKD-SSSFALFDGNS 114 (404)
Q Consensus 72 LP~v~~~GDII~l~rv------ki~~~~g~~~~~~~~~-~ss~~vf~~~~ 114 (404)
+|.+ ++||+|.+|=- ++|.|.|-.-+.-+.+ .++|.|=+-..
T Consensus 1 iP~f-~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~ 49 (98)
T 2ftc_K 1 IPEF-YVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIE 49 (98)
T ss_pred CCcc-CCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEecc
Confidence 5888 89999999822 2456666555544444 36677644433
No 42
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=70.20 E-value=43 Score=27.27 Aligned_cols=82 Identities=16% Similarity=0.028 Sum_probs=50.9
Q ss_pred CCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChhhhccCCCCceEEEEEecC
Q 015600 166 EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDR 245 (404)
Q Consensus 166 ~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pp~G~~l~V~~~~ 245 (404)
+=+.+.+++.|+.+. + ....+.+.+-|||+. |.+.+|.
T Consensus 35 ~i~~V~iVG~V~~~~-~-~~~~~~~~ldD~TG~----------------------------------------I~~~~W~ 72 (136)
T 4gop_B 35 ELGQLTFVAVVRNIS-R-NATNVAYSVEDGTGQ----------------------------------------IEVRQWL 72 (136)
T ss_dssp BCCEEEEEEEEEEEE-E-CSSEEEEEEECSSCE----------------------------------------EEEEEEC
T ss_pred EEEEEEEEEEEEEEE-e-cCCeEEEEEECCCCC----------------------------------------EEEEEec
Confidence 456889999999998 5 567888999999852 2334454
Q ss_pred chhhh---hhccCCCCcEEEEeceEEEEeCcEEEEEEecCCceEEcCCCCh
Q 015600 246 SYENF---GRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDN 293 (404)
Q Consensus 246 ~~~~~---~~~~~k~g~wv~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~ 293 (404)
..+.. -...+.+|++|++..- ++...|..+... .+|+.+.+.+.
T Consensus 73 ~~~~~~~~~~~~~~~g~yVrV~G~-v~~f~g~~qi~~---~~ir~v~d~Ne 119 (136)
T 4gop_B 73 DSSSDDSSKASEIRNNVYVRVLGT-LKSFQNRRSISS---GHMRPVIDYNE 119 (136)
T ss_dssp C--------CCSCCTTCEEEEEEE-EEEETTEEEEEE---SEEEECSSHHH
T ss_pred ccCCcccccccccCCCCEEEEEEE-EEEeCCEEEEEE---EEEEECCCccH
Confidence 33211 1466899999997744 344555443321 25666655444
No 43
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=67.86 E-value=74 Score=29.14 Aligned_cols=82 Identities=11% Similarity=0.015 Sum_probs=52.0
Q ss_pred CceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCCccCCCCCccccCCCCChhhhccCCCCceEEEEEecCc
Q 015600 167 HRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRS 246 (404)
Q Consensus 167 ~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pp~G~~l~V~~~~~ 246 (404)
=..+.+++.|.++. . ....+.+.+-|+|+. .|.+.+|..
T Consensus 71 i~~V~ivG~V~~i~-~-~~~~~~~~L~D~TG~---------------------------------------~I~~k~W~~ 109 (270)
T 2pi2_A 71 ISQVTIVGIIRHAE-K-APTNIVYKIDDMTAA---------------------------------------PMDVRQWVD 109 (270)
T ss_dssp ESEEEEEEEEEEEE-E-CSSEEEEEEECSSSS---------------------------------------CEEEEEECC
T ss_pred EEEEEEEEEEEEEE-e-ccceEEEEEECCCCC---------------------------------------EEEEEEEcC
Confidence 35789999999997 5 567889999998852 123445543
Q ss_pred hhh--hhhccCCCCcEEEEeceEEEEeCcEEEEEEecCCceEEcCCCCh
Q 015600 247 YEN--FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDN 293 (404)
Q Consensus 247 ~~~--~~~~~~k~g~wv~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~ 293 (404)
.+. .....+++|++|++.- +++...|..+.... +|+.+.+.+.
T Consensus 110 ~~~~~~~~~~~~~G~yVrV~G-~v~~f~g~~qi~i~---~ir~v~d~nE 154 (270)
T 2pi2_A 110 TDDTSSENTVVPPETYVKVAG-HLRSFQNKKSLVAF---KIMPLEDMNE 154 (270)
T ss_dssp -------CCCCCTTCEEEEEE-EEEEETTEEEEEEE---EEEECSCTHH
T ss_pred cCcccchhhcCCCCCEEEEEE-EEEecCCeeEEEEE---EEEecCCHhH
Confidence 221 1135689999999775 44555665544322 6677776555
No 44
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=67.51 E-value=8.4 Score=32.89 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=47.5
Q ss_pred CEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCCCCCCCCEEEEeeEEEEEEcCeeEE
Q 015600 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPRVLSPRDLILLKNVMIKKHQAELSA 98 (404)
Q Consensus 22 ~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~~gl~v~iF~~~~~---~LP~v~~~GDII~l~rvki~~~~g~~~~ 98 (404)
..|.+.|+|+.... +.+ ...++|=|.|- .-|.|.++-+... .+.....+|++|+++. .|+.|+|+.+.
T Consensus 48 ~~V~IvGiVv~~~~-~~~-----~~~ytIDD~TG--~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G-~v~~fr~~rqI 118 (159)
T 3kf6_A 48 RWIQIVGYIAAIDI-YEG-----KHVLTVDDCSG--MVLRVVFIIQDDFSMSKRAISMSPGNVVCVFG-KINSFRSEVEL 118 (159)
T ss_dssp CEEEEEEEEEEEEE-ETT-----EEEEEEECSSS--CEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEE-EEECSSSSCEE
T ss_pred EEEEEEEEEEEEEE-eCC-----EEEEEEecCCC--CeEEEEEEccCCCCcccccccCCCCCEEEEEE-EEEeeCCEEEE
Confidence 46889999999763 111 26667777663 2389999875411 1122237899999965 67889998877
Q ss_pred Eee
Q 015600 99 VFY 101 (404)
Q Consensus 99 ~~~ 101 (404)
...
T Consensus 119 ~~~ 121 (159)
T 3kf6_A 119 IAQ 121 (159)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 45
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=64.09 E-value=13 Score=31.07 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCEEEEeeE-------EEEEEcCeeEEEeecC-ceEEEEE
Q 015600 70 DQLPRVLSPRDLILLKNV-------MIKKHQAELSAVFYKD-SSSFALF 110 (404)
Q Consensus 70 ~~LP~v~~~GDII~l~rv-------ki~~~~g~~~~~~~~~-~ss~~vf 110 (404)
.++|.+ .+||+|.+|=- ++|.|.|-+.+.-+.+ .++|.|=
T Consensus 17 ~diP~F-~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVR 64 (146)
T 3v2d_T 17 TDLPEF-RPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVR 64 (146)
T ss_dssp CCCCCC-CTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEE
T ss_pred ccCCCc-CCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEE
Confidence 579999 89999999743 3466766655554444 3677763
No 46
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=58.26 E-value=23 Score=37.46 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=50.9
Q ss_pred eehHhhhh----ccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEee
Q 015600 11 VRIKELAM----HVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKN 86 (404)
Q Consensus 11 ~~i~~~~~----~~~~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~r 86 (404)
+++.++.+ ...+-|+++|+|+..... ++-.+ .+-|.|++..- +.|.++.+-.++ + .+|.+|-+.|
T Consensus 597 ~~~~~l~~~~f~p~~~EvDivG~Vv~v~~~--~~~~~---~vylsD~~~nl--l~Ikf~~~l~eD---~-~~~~~va~sN 665 (738)
T 1miu_A 597 LHFSRLSDPAFQPPCSEVDVVGVVVSVVKP--IGLAP---LVYLSDECLNL--LVVKFGIDLNED---I-KPRVLIAASN 665 (738)
T ss_dssp CCSGGGGSSSCCTTTTEEEEEEEEEEEECC--TTSCC---EEEEECSSSCE--EEEEESSCCCSC---C-CSSCEEEEEE
T ss_pred eeHHHhcCccccCCCCceeEEEEEEEEccc--Ccccc---eEEEEcCCCcE--EEEEEecCchhh---C-ccccEEEEee
Confidence 34555653 356789999999999653 21123 55689999743 667776765555 6 8999999999
Q ss_pred EEEEEEc
Q 015600 87 VMIKKHQ 93 (404)
Q Consensus 87 vki~~~~ 93 (404)
++.+...
T Consensus 666 L~~r~~~ 672 (738)
T 1miu_A 666 LQCQPES 672 (738)
T ss_dssp EECCSCC
T ss_pred eEeeccc
Confidence 9998664
No 47
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=55.34 E-value=17 Score=40.19 Aligned_cols=85 Identities=15% Similarity=0.301 Sum_probs=60.9
Q ss_pred ceeehHhhhhccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCC---CCCCCCCCCEEEEe
Q 015600 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQ---LPRVLSPRDLILLK 85 (404)
Q Consensus 9 ~y~~i~~~~~~~~~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~~gl~v~iF~~~~~~---LP~v~~~GDII~l~ 85 (404)
..++|.++.. ....|-|-|-|-+... +.+|......+|.|+|-+. +|.|.+|.++.+. +-.+ +.|+-|+++
T Consensus 6 ~~~~~~~~~~-~~~~~~~~g~v~~~~~-~~~~~~~~~~~~~~td~~~---~~~~k~f~~~~~~~~~~~~~-~~g~~~~~~ 79 (1041)
T 3f2b_A 6 PVRRLETIVE-EERRVVVQGYVFDAEV-SELKSGRTLLTMKITDYTN---SILVKMFSRDKEDAELMSGV-KKGMWVKVR 79 (1041)
T ss_dssp -CBCGGGCCS-CEEEEEEEEEEEEEEE-EECTTSCEEEEEEEECSSC---EEEEEEECSSHHHHHHHHTC-CTTCEEEEE
T ss_pred CcccHHHhhc-ccceEEEEEEEEEEEE-EEccCCCEEEEEEEEeCCC---CEEEEEeecccchHHHHhcC-CCCCEEEEE
Confidence 4578888854 3446888999887653 4456556889999999854 4999999865443 3456 789999997
Q ss_pred -eEEEEEEcCeeEEE
Q 015600 86 -NVMIKKHQAELSAV 99 (404)
Q Consensus 86 -rvki~~~~g~~~~~ 99 (404)
++....|.+++...
T Consensus 80 g~~~~d~~~~~~~~~ 94 (1041)
T 3f2b_A 80 GSVQNDTFVRDLVII 94 (1041)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEeccCCcceEEE
Confidence 66777787775443
No 48
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=47.33 E-value=50 Score=36.51 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=28.6
Q ss_pred ccccccc-CCceEeEEEEEEEEEe-eCCCC--eEEEEEEcCCCC
Q 015600 159 LSLKDIS-EHRYFDLVCKVFHVSY-DDSKG--LWMLFVWDGTDV 198 (404)
Q Consensus 159 ~~L~di~-~~~f~Dl~~qVv~~~~-~~~~~--~~~L~VwDgT~~ 198 (404)
..|+||. +..-+-+.++|.++.. +..++ -++++|+|||+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~ 51 (1041)
T 3f2b_A 8 RRLETIVEEERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNS 51 (1041)
T ss_dssp BCGGGCCSCEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCE
T ss_pred ccHHHhhcccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCC
Confidence 5788886 4566788899988763 33333 468899999854
No 49
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=47.12 E-value=25 Score=29.88 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=44.5
Q ss_pred cCCCccccHHHHhc-CCCCCceEEEEEEEEeecCCCccccccCCCCcEEEEEEEEeCCCceEEEEEecc
Q 015600 329 WVNVASVTLMKIAT-QLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGK 396 (404)
Q Consensus 329 ~~~~p~ttL~~IL~-~~~~~~kyr~~VRVV~~~P~~l~df~~~~~~~~~~f~L~leD~t~~~~~~v~~~ 396 (404)
-..-|||=|+-++. .|+.+..|++.+-|+. -...+..+.+ .|...-.+.|.|+.++|.+.++
T Consensus 18 l~s~PFtYL~~l~~~~~~~~~~~kVKafI~t----l~~~l~~~~~--~W~l~a~IsDGS~~LdV~f~~~ 80 (157)
T 3mxn_A 18 LYSPPFVYLSVLMASKPKEVTTVKVKAFIVT----LTGNLSSSGG--IWSITAKVSDGTAYLDVDFVDE 80 (157)
T ss_dssp HHCSSCCCHHHHHHTCCSSCEEEEEEEEEEE----ECSCCBCGGG--SCBCEEEEECSSCEEEEEECHH
T ss_pred cCCCchHHHHHHHhhccCCceEEEEEEEEEE----eccceeecCC--EEEEEEEEeCCceeEEEEeeHH
Confidence 34678998988885 4555666666666665 4455555556 7889999999999999977543
No 50
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=44.06 E-value=17 Score=40.97 Aligned_cols=76 Identities=22% Similarity=0.259 Sum_probs=37.3
Q ss_pred eehHhhhh-----ccCCEEEEEEEEEecCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 015600 11 VRIKELAM-----HVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (404)
Q Consensus 11 ~~i~~~~~-----~~~~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (404)
+++.++.. ..|+.|.+.|+|+..+.|. |+.++-++-++|-|.+-. +.|.+|.+..+........|.++.++
T Consensus 1027 ~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~~-Tk~G~~maf~tleD~tg~---~evvvf~~~~~~~~~~l~~~~~~~v~ 1102 (1220)
T 2hpi_A 1027 CTIEELSEFVRELPGKPKVLLSGMVEEVVRKP-TRSGGMMARFTLSDETGA---LEVVVFGRAYEGVSPKLKEDIPLLVL 1102 (1220)
T ss_dssp SCTTTHHHHHSSSSSSCEEEEEEEECCC-------------CEEEEETTEE---EEEC-------------CTTCEEEEE
T ss_pred ccHHHHhhhhhhccCCCeEEEEEEEEEEEEee-cCCCCeEEEEEEEECCCC---EEEEEcHHHHHHHHHHhccCCEEEEE
Confidence 45666642 3567799999999998764 555677899999998753 99999998777777765667777764
Q ss_pred eEEEEE
Q 015600 86 NVMIKK 91 (404)
Q Consensus 86 rvki~~ 91 (404)
.+++.
T Consensus 1103 -G~v~~ 1107 (1220)
T 2hpi_A 1103 -AEVEK 1107 (1220)
T ss_dssp -EEEC-
T ss_pred -EEEEE
Confidence 46653
No 51
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=40.92 E-value=19 Score=30.78 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCEEEEeeE-------EEEEEcCeeEEEeecC-ceEEEEEe
Q 015600 70 DQLPRVLSPRDLILLKNV-------MIKKHQAELSAVFYKD-SSSFALFD 111 (404)
Q Consensus 70 ~~LP~v~~~GDII~l~rv-------ki~~~~g~~~~~~~~~-~ss~~vf~ 111 (404)
.++|.+ ++||+|++|=- ++|.|.|-+.+.-+.+ .++|.|=.
T Consensus 22 ~diP~F-r~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRk 70 (166)
T 2zjr_M 22 RQLPDF-RPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRK 70 (166)
T ss_dssp CCCCCC-SSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEE
T ss_pred cCCCCc-CCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEE
Confidence 579999 89999999822 3577877666555544 46777643
No 52
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=37.23 E-value=28 Score=27.50 Aligned_cols=26 Identities=12% Similarity=-0.175 Sum_probs=23.1
Q ss_pred EEEEEecCchhhhhhccCCCCcEEEE
Q 015600 238 VLRVSTDRSYENFGRYFTATGKWVRI 263 (404)
Q Consensus 238 ~l~V~~~~~~~~~~~~~~k~g~wv~l 263 (404)
.++|.+|...|+.+.+.++.|+.|.+
T Consensus 54 fi~vv~wgk~AE~~~~yl~KG~~V~V 79 (108)
T 3koj_A 54 RLKVVGWGAVAQELQDRCRLNDEVVL 79 (108)
T ss_dssp EEEEEEETHHHHHHHHHCCTTCEEEE
T ss_pred EEEEEEEhHHHHHHHHhCCCCCEEEE
Confidence 67999999999988889999999953
No 53
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=34.77 E-value=63 Score=24.02 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=30.8
Q ss_pred ccccc--cCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCC
Q 015600 160 SLKDI--SEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPL 201 (404)
Q Consensus 160 ~L~di--~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~~~~ 201 (404)
+|+++ ...+|..+.+||+.+. . .+....|++-|-+-|..+
T Consensus 3 lisevlktskqylsvlaqvvdiq-s-sdknirlkicdnscnqel 44 (109)
T 3u4z_A 3 LISEVLKTSKQYLSVLAQVVDIQ-S-SDKNIRLKICDNSCNQEL 44 (109)
T ss_dssp CHHHHTTCCCSEEEEEEEEEEEE-C-CSSCEEEEEECSSCSSCE
T ss_pred hHHHHHHHHHHHHHHHHHHhhhh-c-CCCceEEEeeccccccee
Confidence 45555 3678999999999998 5 567899999997755543
No 54
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=33.37 E-value=49 Score=28.17 Aligned_cols=73 Identities=10% Similarity=0.149 Sum_probs=49.0
Q ss_pred CEEEEEEEEEecCCceecCCCceEEEEEEEe-CCCC-----------CCCeEEEEecCCCCCCCCCCCCCCEEEEe-eEE
Q 015600 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVD-DSQQ-----------SPELLVNIFTSSIDQLPRVLSPRDLILLK-NVM 88 (404)
Q Consensus 22 ~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D-~S~~-----------~~gl~v~iF~~~~~~LP~v~~~GDII~l~-rvk 88 (404)
.+|.|+|-|..--..+.|....-.++|+|.= .+.. ..-+.|.+|.+..+.+-.-.+.||-|.+. +++
T Consensus 5 N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~ 84 (168)
T 3afp_A 5 TTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLK 84 (168)
T ss_dssp CEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEEEE
Confidence 4688999988654445665556778899863 3221 12399999987555554423779977776 899
Q ss_pred EEEEcC
Q 015600 89 IKKHQA 94 (404)
Q Consensus 89 i~~~~g 94 (404)
...|.+
T Consensus 85 ~~~~~d 90 (168)
T 3afp_A 85 QRSFET 90 (168)
T ss_dssp EEEEC-
T ss_pred eeeEEC
Confidence 999964
No 55
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=22.75 E-value=1e+02 Score=23.73 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=0.0
Q ss_pred EEEEecCchhhhhhccCCCCcEEEEeceEEEEeCcEEEEEEecC
Q 015600 239 LRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSS 282 (404)
Q Consensus 239 l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~g~leG~l~~~ 282 (404)
++|.+|...|+.+.+.++.|+-| ..+|+|+..
T Consensus 50 ~~vv~~g~~Ae~~~~~l~KG~~V------------~V~G~L~~~ 81 (104)
T 1txy_A 50 MPVIVSGHENQAITHSITVGSRI------------TVQGFISCH 81 (104)
T ss_dssp EEEEEESSTTHHHHTTCCTTCEE------------EEEEEEEC-
T ss_pred EEEEEEhHHHHHHHhhCCCCCEE------------EEEEEEEec
No 56
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=22.48 E-value=1.2e+02 Score=23.42 Aligned_cols=77 Identities=12% Similarity=0.021 Sum_probs=53.3
Q ss_pred CEEEEEEEEEecCCceecCCCceEEEEEEEeCCCC-CCC--------eEEEEecCCCCCCCCCCCCCCEEEEe-eEEEEE
Q 015600 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQ-SPE--------LLVNIFTSSIDQLPRVLSPRDLILLK-NVMIKK 91 (404)
Q Consensus 22 ~~vnv~GVV~d~~~P~~trGtD~~~t~~I~D~S~~-~~g--------l~v~iF~~~~~~LP~v~~~GDII~l~-rvki~~ 91 (404)
.+|-++|-+..--..+-|...--.++|+|.=.+.. ..| +.|.+|.+..| +-.+ ..|+-|.+. +++.++
T Consensus 8 Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~l-~KG~~v~veGrL~~rs 85 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQY-RQGDCATVEGFLAQKS 85 (103)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HSTT-CTTCEEEEEEEEEESS
T ss_pred cEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhcc-CCCCEEEEEEEEEECc
Confidence 46889999987666666654567888888643322 112 88999987666 7775 789966664 678888
Q ss_pred EcCeeEEEee
Q 015600 92 HQAELSAVFY 101 (404)
Q Consensus 92 ~~g~~~~~~~ 101 (404)
|+++ +++.+
T Consensus 86 ~~~~-~lvlh 94 (103)
T 3k8a_A 86 RRSL-MPMLR 94 (103)
T ss_dssp SSCC-CEEEE
T ss_pred cCCc-cEEEE
Confidence 8877 55443
No 57
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=21.44 E-value=59 Score=27.25 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=23.6
Q ss_pred EEEEEecCchhhhhhccCCCCcEEEEe
Q 015600 238 VLRVSTDRSYENFGRYFTATGKWVRIR 264 (404)
Q Consensus 238 ~l~V~~~~~~~~~~~~~~k~g~wv~l~ 264 (404)
.++|.+|...|+.+.+.++.|+.|.+.
T Consensus 64 ~~~v~~wg~~Ae~~~~~l~KG~~V~Ve 90 (153)
T 1z9f_A 64 FFRIVTFGRLAEFARTYLTKGRLVLVE 90 (153)
T ss_dssp EEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred EEEEEEECHHHHHHHhhCCCCCEEEEE
Confidence 789999999898888889999999743
No 58
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=21.28 E-value=1.1e+02 Score=23.99 Aligned_cols=72 Identities=18% Similarity=0.095 Sum_probs=45.8
Q ss_pred EEEEEEEEEecCCceecCCC-ceEEEEEEEeCCCCC----CCeEEEEecCCCCCCCCCCCCCCEEEE-eeEEEEEEcC
Q 015600 23 KVNLLGVVLEFSIPRKSQGT-DYVCVLKIVDDSQQS----PELLVNIFTSSIDQLPRVLSPRDLILL-KNVMIKKHQA 94 (404)
Q Consensus 23 ~vnv~GVV~d~~~P~~trGt-D~~~t~~I~D~S~~~----~gl~v~iF~~~~~~LP~v~~~GDII~l-~rvki~~~~g 94 (404)
.|.++|=+..--.-+.|.++ .-.++|+|.=.+... +-+.|.+|.+..|.+-.-.+.||-|.+ -+++.+.|.+
T Consensus 13 ~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~~ 90 (108)
T 3koj_A 13 SCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLLK 90 (108)
T ss_dssp EEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC---
T ss_pred eEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEEC
Confidence 57788877654433555544 678899996554422 249999999876766653378995555 5778888854
Done!