BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015601
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VG5|A Chain A, Solution Structure Of Rsgi Ruh-014, A Uba Domain From
Arabidopsis Cdna
Length = 73
Score = 65.9 bits (159), Expect = 4e-11, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
Query: 342 RQPALGTAVAVDRVPAGQQGAVVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEILS 401
RQ + A + P Q S+E+IQKLV+MGFD+TQVEVALAAAD DL VAVEIL
Sbjct: 9 RQAPIANAAVL---PQSQGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILM 65
Query: 402 QQ 403
Q
Sbjct: 66 SQ 67
>pdb|2IC8|A Chain A, Crystal Structure Of Glpg
pdb|2NRF|A Chain A, Crystal Structure Of Glpg, A Rhomboid Family Intramembrane
Protease
pdb|2NRF|B Chain B, Crystal Structure Of Glpg, A Rhomboid Family Intramembrane
Protease
pdb|3UBB|A Chain A, The Crystal Structure Of Glpg In Complex With A
Phosphonofluoridate Inhibitor
Length = 182
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 32/193 (16%)
Query: 26 TSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNML 85
T ++I C +++ + G P +F+ +R++T + H SL+H+LFN+L
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 86 ALVPLGSELERIMGSVRMFYITILLATSNXXXXXXXXXXXXXXPFYRLQNVMDECAIGFS 145
LG +E+ +GS ++ IT++ A + Y Q G S
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLISALLSG---------------YVQQKFSGPWFGGLS 111
Query: 146 GVIFSLIVI---------ETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLG 196
GV+++L+ ++ + + +F L I A W+ LF + M N +
Sbjct: 112 GVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFD-----LFGMSMANGA--- 163
Query: 197 HLCGILSGFAYTY 209
H+ G+ G A +
Sbjct: 164 HIAGLAVGLAMAF 176
>pdb|2XOV|A Chain A, Crystal Structure Of E.Coli Rhomboid Protease Glpg, Native
Enzyme
Length = 181
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 32/193 (16%)
Query: 26 TSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNML 85
T ++I C +++ + G P +F+ +R++T + H SL+H+LFN+L
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 86 ALVPLGSELERIMGSVRMFYITILLATSNXXXXXXXXXXXXXXPFYRLQNVMDECAIGFS 145
LG +E+ +GS ++ IT++ A + Y Q G S
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLISALLSG---------------YVQQKFSGPWFGGLS 111
Query: 146 GVIFSLIVI---------ETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLG 196
GV+++L+ ++ + + +F L I A W+ LF + M N +
Sbjct: 112 GVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFD-----LFGMSMANGA--- 163
Query: 197 HLCGILSGFAYTY 209
H+ G+ G A +
Sbjct: 164 HIAGLAVGLAMAF 176
>pdb|2IRV|A Chain A, Crystal Structure Of Glpg, A Rhomboid Intramembrane Serine
Protease
pdb|2IRV|B Chain B, Crystal Structure Of Glpg, A Rhomboid Intramembrane Serine
Protease
Length = 182
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 32/193 (16%)
Query: 26 TSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNML 85
T ++I C +++ + G P +F+ +R++T + H SL+H+LFN+L
Sbjct: 6 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 65
Query: 86 ALVPLGSELERIMGSVRMFYITILLATSNXXXXXXXXXXXXXXPFYRLQNVMDECAIGFS 145
LG +E+ +GS ++ IT++ A + Y Q G S
Sbjct: 66 WWWYLGGAVEKRLGSGKLIVITLISALLSG---------------YVQQKFSGPWFGGLS 110
Query: 146 GVIFSLIVI---------ETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLG 196
GV+++L+ ++ + + +F L I A W+ LF + M N +
Sbjct: 111 GVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFD-----LFGMSMANGA--- 162
Query: 197 HLCGILSGFAYTY 209
H+ G+ G A +
Sbjct: 163 HIAGLAVGLAMAF 175
>pdb|3B45|A Chain A, Crystal Structure Of Glpg At 1.9a Resolution
Length = 180
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 32/193 (16%)
Query: 26 TSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNML 85
T ++I C +++ + G P +F+ +R++T + H SL+H+LFN+L
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 86 ALVPLGSELERIMGSVRMFYITILLATSNXXXXXXXXXXXXXXPFYRLQNVMDECAIGFS 145
LG +E+ +GS ++ IT++ A + Y Q G S
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLISALLSG---------------YVQQKFSGPWFGGLS 111
Query: 146 GVIFSLIVI---------ETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLG 196
GV+++L+ ++ + + +F L I A W+ LF + M N +
Sbjct: 112 GVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFD-----LFGMSMANGA--- 163
Query: 197 HLCGILSGFAYTY 209
H+ G+ G A +
Sbjct: 164 HIAGLAVGLAMAF 176
>pdb|2O7L|A Chain A, The Open-Cap Conformation Of Glpg
Length = 180
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 32/193 (16%)
Query: 26 TSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNML 85
T ++I C +++ + G P +F+ +R++T + H SL+H+LFN+L
Sbjct: 5 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 64
Query: 86 ALVPLGSELERIMGSVRMFYITILLATSNXXXXXXXXXXXXXXPFYRLQNVMDECAIGFS 145
LG +E+ +GS ++ IT++ A + Y Q G S
Sbjct: 65 WWWYLGGAVEKRLGSGKLIVITLISALLSG---------------YVQQKFSGPWFGGLS 109
Query: 146 GVIFSLIVI---------ETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLG 196
GV+++L+ ++ + + +F L I A W+ LF + M N +
Sbjct: 110 GVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFD-----LFGMSMANGA--- 161
Query: 197 HLCGILSGFAYTY 209
H+ G+ G A +
Sbjct: 162 HIAGLAVGLAMAF 174
>pdb|2XOW|A Chain A, Structure Of Glpg In Complex With A Mechanism-Based
Isocoumarin Inhibitor
pdb|3TXT|A Chain A, Crystal Structure Of Glpg In Complex With Inhibitor Dfp
pdb|3ZEB|A Chain A, A Complex Of Glpg With Isocoumarin Inhibitor Covalently
Bonded To Serine 201 And Histidine 150
Length = 179
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 32/193 (16%)
Query: 26 TSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNML 85
T ++I C +++ + G P +F+ +R++T + H SL+H+LFN+L
Sbjct: 6 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 65
Query: 86 ALVPLGSELERIMGSVRMFYITILLATSNXXXXXXXXXXXXXXPFYRLQNVMDECAIGFS 145
LG +E+ +GS ++ IT++ A + Y Q G S
Sbjct: 66 WWWYLGGAVEKRLGSGKLIVITLISALLSG---------------YVQQKFSGPWFGGLS 110
Query: 146 GVIFSLIVI---------ETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLG 196
GV+++L+ ++ + + +F L I A W+ LF + M N +
Sbjct: 111 GVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFD-----LFGMSMANGA--- 162
Query: 197 HLCGILSGFAYTY 209
H+ G+ G A +
Sbjct: 163 HIAGLAVGLAMAF 175
>pdb|2XTU|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg Active Site
Mutant, S201t In Trigonal Crystal Form
Length = 181
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 26 TSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNML 85
T ++I C +++ + G P +F+ +R++T + H SL+H+LFN+L
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 86 ALVPLGSELERIMGSVRMFYITIL 109
LG +E+ +GS ++ IT++
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLI 90
>pdb|2XTV|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg, Active Site
Mutant, S201t, Orthorhombic Crystal Form
Length = 180
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 26 TSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNML 85
T ++I C +++ + G P +F+ +R++T + H SL+H+LFN+L
Sbjct: 5 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 64
Query: 86 ALVPLGSELERIMGSVRMFYITIL 109
LG +E+ +GS ++ IT++
Sbjct: 65 WWWYLGGAVEKRLGSGKLIVITLI 88
>pdb|3B44|A Chain A, Crystal Structure Of Glpg W136a Mutant
Length = 180
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 32/193 (16%)
Query: 26 TSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNML 85
T ++I C +++ + G P +F+ R++T + H SL+H+LFN+L
Sbjct: 7 TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFARYFTHALMHFSLMHILFNLL 66
Query: 86 ALVPLGSELERIMGSVRMFYITILLATSNXXXXXXXXXXXXXXPFYRLQNVMDECAIGFS 145
LG +E+ +GS ++ IT++ A + Y Q G S
Sbjct: 67 WWWYLGGAVEKRLGSGKLIVITLISALLSG---------------YVQQKFSGPWFGGLS 111
Query: 146 GVIFSLIVI---------ETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLG 196
GV+++L+ ++ + + +F L I A W+ LF + M N +
Sbjct: 112 GVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFD-----LFGMSMANGA--- 163
Query: 197 HLCGILSGFAYTY 209
H+ G+ G A +
Sbjct: 164 HIAGLAVGLAMAF 176
>pdb|1Z96|A Chain A, Crystal Structure Of The Mud1 Uba Domain
pdb|1Z96|B Chain B, Crystal Structure Of The Mud1 Uba Domain
Length = 40
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 366 DEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 400
+ +I +LVSMGFD + AL AA+GDL+VA L
Sbjct: 5 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL 39
>pdb|2NR9|A Chain A, Crystal Structure Of Glpg, Rhomboid Peptidase From
Haemophilus Influenzae
pdb|3ODJ|A Chain A, Crystal Structure Of H. Influenzae Rhomboid Glpg With
Disordered Loop 4, Helix 5 And Loop 5
Length = 196
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 32 VCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLG 91
+C IY+ L D + P+ +V+R+ + + H S LH+LFN+ G
Sbjct: 18 LCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFG 77
Query: 92 SELERIMGSVRMFYITIL 109
+ER GSV++ + ++
Sbjct: 78 GMIERTFGSVKLLMLYVV 95
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 361 GAVVSDEE----IQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 400
GA VS E I+ L +MGFD+ V VAL++ D+ A E+L
Sbjct: 171 GAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELL 214
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 361 GAVVSDEE----IQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 400
GA VS E I+ L +MGFD+ V VAL++ D+ A E+L
Sbjct: 156 GAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELL 199
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 361 GAVVSDEE----IQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 400
GA VS E I+ L +MGFD+ V VAL++ D+ A E+L
Sbjct: 155 GAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELL 198
>pdb|1VEJ|A Chain A, Solution Structure Of Rsgi Ruh-016, A Uba Domain From
Mouse Cdna
Length = 74
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 367 EEIQKLVSMGFDKTQVEV-ALAAADGDLNVAVEIL 400
+E+++L ++GF + AL A DGD++ A+E+L
Sbjct: 31 QELEELKALGFANRDANLQALVATDGDIHAAIEML 65
>pdb|1XDX|A Chain A, Solution Structure Of The Tctex1 Light Chain From
Chlamydomonas Inner Dynein Arm I1
pdb|1XDX|B Chain B, Solution Structure Of The Tctex1 Light Chain From
Chlamydomonas Inner Dynein Arm I1
Length = 114
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 9 AGLSTRANQWWESIPFFTSAVVIVCGTIYLICLLFG 44
AGL T A+ WW+S + V ++Y IC +FG
Sbjct: 76 AGLHTAASCWWDSTTDGSRTVRWENKSMYCICTVFG 111
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 361 GAVVSDEE----IQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 400
GA VS E I+ L + GFD+ V VAL++ D+ A E+L
Sbjct: 207 GAPVSSPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELL 250
>pdb|2KNZ|A Chain A, Nmr Structure Of Cip75 Uba Domain
Length = 53
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 356 PAGQQGAVVSDEEIQKLVSMGFDKTQVEV-ALAAADGDLNVAVEIL 400
P G V +++++L SMGF + + AL A GD+N A+E L
Sbjct: 2 PLGSMPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERL 47
>pdb|3S3Y|A Chain A, Crystal Structure An Tandem Cyanovirin-N Dimer, Cvn2l0
Length = 213
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 186 QVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIR 236
Q + T ++L H+ I Y G F T + SAI+ S L STC R
Sbjct: 90 QFVSTKINLDDHIANIDGTLKYELGKF----SQTCYNSAIQGSVLTSTCER 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,770,617
Number of Sequences: 62578
Number of extensions: 414591
Number of successful extensions: 802
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 23
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)