Query 015601
Match_columns 404
No_of_seqs 372 out of 1817
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 15:27:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.9 2.6E-24 9E-29 189.5 19.5 172 21-213 2-180 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 2.3E-24 7.9E-29 192.2 13.4 175 20-213 6-185 (196)
3 1vg5_A RSGI RUH-014, rhomboid 99.5 8.1E-14 2.8E-18 101.6 8.9 42 363-404 27-69 (73)
4 1wgn_A UBAP1, ubiquitin associ 99.5 2.4E-14 8E-19 98.0 4.3 39 366-404 20-59 (63)
5 1veg_A NEDD8 ultimate buster-1 99.4 1.9E-13 6.6E-18 101.7 6.8 41 364-404 28-69 (83)
6 2g3q_A Protein YBL047C; endocy 99.4 7.7E-14 2.6E-18 92.0 4.2 38 365-402 4-42 (43)
7 1ify_A HHR23A, UV excision rep 99.4 1.9E-13 6.5E-18 92.5 4.5 37 365-401 8-45 (49)
8 1wji_A Tudor domain containing 99.4 4.9E-13 1.7E-17 95.2 6.2 40 364-403 8-48 (63)
9 1wiv_A UBP14, ubiquitin-specif 99.4 8.1E-13 2.8E-17 97.0 7.1 41 364-404 28-69 (73)
10 2ekk_A UBA domain from E3 ubiq 99.3 1E-12 3.6E-17 88.2 5.4 40 363-403 7-47 (47)
11 2dak_A Ubiquitin carboxyl-term 99.3 6.7E-13 2.3E-17 95.0 4.4 40 363-402 7-47 (63)
12 2jy5_A Ubiquilin-1; UBA, alter 99.3 2.2E-12 7.4E-17 88.3 6.7 38 365-402 12-51 (52)
13 2knz_A Ubiquilin-4; cytoplasm, 99.3 1.6E-12 5.5E-17 89.4 5.2 38 366-403 12-51 (53)
14 1vej_A Riken cDNA 4931431F19; 99.3 6.3E-12 2.2E-16 91.7 8.5 39 366-404 30-70 (74)
15 1whc_A RSGI RUH-027, UBA/UBX 3 99.3 2.1E-12 7E-17 92.5 5.0 41 363-403 7-49 (64)
16 2cpw_A CBL-interacting protein 99.3 3.1E-12 1E-16 91.5 5.7 40 365-404 19-60 (64)
17 2bwb_A Ubiquitin-like protein 99.3 2.9E-12 1E-16 85.1 5.1 36 366-401 8-45 (46)
18 2dag_A Ubiquitin carboxyl-term 99.3 4.5E-12 1.5E-16 93.3 6.0 41 363-403 7-49 (74)
19 1z96_A DNA-damage, UBA-domain 99.3 4.8E-12 1.6E-16 82.1 5.2 36 365-400 4-39 (40)
20 2crn_A Ubash3A protein; compac 99.3 3.7E-12 1.2E-16 90.9 4.3 40 364-403 8-49 (64)
21 1dv0_A DNA repair protein HHR2 99.2 2.4E-12 8.1E-17 86.0 2.8 39 365-403 4-43 (47)
22 1wr1_B Ubiquitin-like protein 99.2 8E-12 2.7E-16 87.0 5.0 38 366-403 18-57 (58)
23 2dai_A Ubadc1, ubiquitin assoc 99.2 1.3E-11 4.3E-16 92.8 5.8 41 363-403 27-68 (83)
24 2dah_A Ubiquilin-3; UBA domain 99.2 1.2E-11 4.2E-16 85.0 5.0 38 366-403 10-49 (54)
25 2ooa_A E3 ubiquitin-protein li 99.2 2.6E-11 8.8E-16 80.2 5.4 36 365-400 11-46 (52)
26 2d9s_A CBL E3 ubiquitin protei 99.2 5.7E-11 2E-15 79.0 6.0 36 365-400 9-44 (53)
27 1vek_A UBP14, ubiquitin-specif 99.1 7.6E-11 2.6E-15 88.8 7.2 41 363-403 27-69 (84)
28 2dkl_A Trinucleotide repeat co 99.1 4.6E-11 1.6E-15 90.0 5.3 39 365-403 21-60 (85)
29 2cwb_A Chimera of immunoglobul 99.1 6.3E-11 2.2E-15 92.8 5.9 39 365-403 66-106 (108)
30 2dna_A Unnamed protein product 99.1 5.7E-11 2E-15 84.4 4.8 38 366-403 20-59 (67)
31 2juj_A E3 ubiquitin-protein li 99.0 6.5E-10 2.2E-14 73.8 4.6 36 365-400 7-42 (56)
32 1oqy_A HHR23A, UV excision rep 98.9 2.9E-09 1E-13 102.6 9.1 38 365-402 168-206 (368)
33 2lbc_A Ubiquitin carboxyl-term 98.9 1.7E-09 5.7E-14 88.8 5.5 40 364-403 77-117 (126)
34 2oo9_A E3 ubiquitin-protein li 98.9 2.4E-09 8.3E-14 68.4 5.0 35 366-400 5-39 (46)
35 4ae4_A Ubiquitin-associated pr 98.8 2.4E-09 8.2E-14 86.0 5.2 39 365-403 76-115 (118)
36 1wj7_A Hypothetical protein (R 98.7 1.3E-08 4.6E-13 78.3 5.2 35 366-400 40-75 (104)
37 3k9o_A Ubiquitin-conjugating e 98.7 1.2E-08 4.2E-13 90.5 5.2 36 366-401 164-200 (201)
38 2cos_A Serine/threonine protei 98.7 2.7E-08 9.3E-13 66.2 5.1 38 363-400 7-45 (54)
39 2cp8_A NEXT to BRCA1 gene 1 pr 98.5 7.4E-08 2.5E-12 65.1 4.1 35 366-400 10-45 (54)
40 2lbc_A Ubiquitin carboxyl-term 98.5 6.3E-08 2.2E-12 79.3 4.3 39 365-403 3-43 (126)
41 2qsf_X RAD23, UV excision repa 98.4 2E-07 7E-12 79.1 5.2 38 365-402 130-168 (171)
42 4ae4_A Ubiquitin-associated pr 98.4 2.2E-07 7.5E-12 74.6 5.0 37 366-402 9-46 (118)
43 3e46_A Ubiquitin-conjugating e 98.3 4.4E-07 1.5E-11 82.9 5.3 36 366-401 216-252 (253)
44 1oqy_A HHR23A, UV excision rep 98.3 1.4E-07 4.7E-12 90.9 2.0 42 363-404 323-365 (368)
45 2cp9_A EF-TS, EF-TSMT, elongat 97.8 3.4E-05 1.2E-09 54.2 5.3 38 363-400 7-45 (64)
46 1wgl_A TOLL-interacting protei 97.7 4.5E-05 1.5E-09 53.0 4.9 38 363-400 7-46 (59)
47 1otr_A Protein CUE2; protein-p 97.5 0.0001 3.5E-09 48.9 4.4 35 366-400 5-41 (49)
48 2pwq_A Ubiquitin conjugating e 97.5 1.7E-05 5.7E-10 70.7 0.0 35 366-400 178-212 (216)
49 3ihp_A Ubiquitin carboxyl-term 97.4 0.00011 3.8E-09 78.7 4.7 40 363-402 718-758 (854)
50 1v92_A NSFL1 cofactor P47; 3-h 97.2 0.00056 1.9E-08 45.0 4.8 39 366-404 6-46 (46)
51 3e21_A HFAF1, FAS-associated f 97.0 0.00074 2.5E-08 43.9 4.1 35 365-399 5-41 (45)
52 1q02_A Sequestosome 1; helical 97.0 0.00044 1.5E-08 45.6 3.0 35 366-400 11-47 (52)
53 2dal_A Protein KIAA0794; FAS a 96.8 0.0016 5.4E-08 45.8 5.0 35 366-400 16-51 (62)
54 1tr8_A Conserved protein (MTH1 96.6 0.0028 9.5E-08 49.1 5.5 38 363-400 63-101 (102)
55 2dhy_A CUE domain-containing p 96.5 0.0067 2.3E-07 43.0 6.4 36 365-400 18-55 (67)
56 1tte_A Ubiquitin-conjugating e 96.4 0.002 6.9E-08 57.2 3.9 30 365-394 169-198 (215)
57 2dzl_A Protein FAM100B; UBA-li 96.4 0.005 1.7E-07 43.7 5.1 34 367-400 19-53 (66)
58 2dam_A ETEA protein; KIAA0887, 96.4 0.0052 1.8E-07 43.8 5.1 35 366-400 19-55 (67)
59 4dbg_B Ring finger protein 31; 94.8 0.017 5.9E-07 47.6 3.3 35 366-400 103-138 (162)
60 3ihp_A Ubiquitin carboxyl-term 94.5 0.025 8.6E-07 60.5 4.5 39 364-402 651-691 (854)
61 2di0_A Activating signal coint 92.9 0.18 6E-06 35.9 5.0 35 366-400 14-50 (71)
62 1p3q_Q VPS9P, vacuolar protein 92.4 0.066 2.3E-06 36.0 2.2 35 366-400 13-49 (54)
63 1vdl_A Ubiquitin carboxyl-term 91.5 0.25 8.6E-06 35.0 4.3 37 366-402 25-64 (80)
64 2qho_B E3 ubiquitin-protein li 91.0 0.45 1.5E-05 30.7 4.8 40 363-402 7-49 (53)
65 1oai_A Nuclear RNA export fact 88.1 0.83 2.8E-05 31.3 4.8 35 366-400 8-43 (59)
66 2jp7_A MRNA export factor MEX6 87.6 0.76 2.6E-05 31.2 4.3 35 366-400 7-42 (57)
67 1ixs_A Holliday junction DNA h 86.9 1 3.6E-05 31.1 4.8 24 366-389 18-41 (62)
68 2lva_A Ubiquitin carboxyl-term 84.7 0.19 6.6E-06 39.4 0.0 37 366-402 19-58 (129)
69 1ufz_A Hypothetical protein BA 79.3 2.4 8.3E-05 30.9 4.2 27 376-402 48-75 (83)
70 4dbg_B Ring finger protein 31; 74.2 2.4 8.4E-05 34.9 3.4 24 377-400 75-98 (162)
71 3e7l_A Transcriptional regulat 67.3 2.8 9.7E-05 28.7 2.1 24 377-400 19-42 (63)
72 1umq_A Photosynthetic apparatu 64.7 3.3 0.00011 30.3 2.1 23 378-400 42-64 (81)
73 1cuk_A RUVA protein; DNA repai 60.7 9.3 0.00032 33.1 4.6 24 366-389 161-184 (203)
74 2ztd_A Holliday junction ATP-d 56.7 13 0.00044 32.4 4.8 24 366-389 165-188 (212)
75 1jkg_B TAP; NTF2-like domain, 53.0 3.4 0.00012 37.1 0.5 34 366-399 199-233 (250)
76 1ntc_A Protein (nitrogen regul 47.2 7.3 0.00025 28.8 1.5 24 377-400 51-74 (91)
77 1g2h_A Transcriptional regulat 45.7 10 0.00035 25.7 1.9 23 377-400 21-43 (61)
78 3k6g_A Telomeric repeat-bindin 44.7 43 0.0015 25.3 5.2 34 367-400 15-49 (111)
79 2w84_A Peroxisomal membrane pr 44.5 28 0.00097 24.4 4.0 29 365-393 35-63 (70)
80 1eto_A FIS, factor for inversi 43.8 11 0.00039 28.4 2.1 24 377-400 58-81 (98)
81 2kna_A Baculoviral IAP repeat- 40.3 21 0.00072 27.2 3.1 22 367-388 29-50 (104)
82 4g3o_A E3 ubiquitin-protein li 38.0 56 0.0019 22.0 4.5 34 366-400 18-53 (58)
83 3ff5_A PEX14P, peroxisomal bio 38.0 38 0.0013 22.5 3.7 25 365-389 30-54 (54)
84 3fe3_A MAP/microtubule affinit 36.9 55 0.0019 29.9 6.2 36 365-400 289-324 (328)
85 4gew_A 5'-tyrosyl-DNA phosphod 34.6 33 0.0011 32.2 4.3 37 364-400 44-81 (362)
86 4fp9_B Mterf domain-containing 34.5 28 0.00096 32.5 3.7 27 366-392 47-73 (335)
87 2ejs_A Autocrine motility fact 34.2 71 0.0024 21.5 4.6 34 366-400 14-49 (58)
88 2ekf_A Ancient ubiquitous prot 33.1 1.1E+02 0.0038 20.8 5.4 35 365-400 13-49 (61)
89 1ixr_A Holliday junction DNA h 31.2 10 0.00035 32.5 0.0 24 366-389 147-170 (191)
90 2l3n_A DNA-binding protein RAP 30.0 1.1E+02 0.0037 21.7 5.1 38 366-403 15-54 (104)
91 1s3s_G P47 protein; AAA ATPase 24.2 38 0.0013 26.7 2.2 14 292-305 9-22 (127)
92 2l2d_A OTU domain-containing p 22.0 1.3E+02 0.0045 20.5 4.1 34 366-399 18-52 (73)
93 1g2y_A Hepatocyte nuclear fact 21.8 1.2E+02 0.0041 17.5 3.3 22 366-387 10-31 (32)
94 2dae_A KIAA0733 protein; mitog 20.6 43 0.0015 23.5 1.6 24 377-400 24-47 (75)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.92 E-value=2.6e-24 Score=189.52 Aligned_cols=172 Identities=20% Similarity=0.309 Sum_probs=129.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhcccc-cccceeechhhhccCcchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhC
Q 015601 21 SIPFFTSAVVIVCGTIYLICLLFGYDS-FYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMG 99 (404)
Q Consensus 21 ~~P~vT~~li~~~v~~~~l~~~~~~~~-~~~l~~~p~~i~~~~q~WRL~Ts~f~h~~~~hll~n~~~l~~~g~~lE~~~G 99 (404)
+.||+|+.++++|+++|++....+... ...+.+.|.. +.++|+||++|+.|+|.++.|+++||+.++.+|+.+|+.+|
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G 80 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLG 80 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 458899999999999999987753321 2345566653 46789999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccChhHHHHHHHHHHHh---hcCCccceeeEeecchhhH
Q 015601 100 SVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETS---LSGAQSRSVFGLFNIPAKW 176 (404)
Q Consensus 100 s~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~sg~i~~l~~~~~~---~~p~~~~~~~~~~~i~~~~ 176 (404)
++||+.+|+++++.+++++.++. ....+|+||+++|++++... ..|+.+.. ++.+...
T Consensus 81 ~~~fl~~yl~~~i~~~l~~~~~~---------------~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~ 141 (181)
T 2xov_A 81 SGKLIVITLISALLSGYVQQKFS---------------GPWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLII 141 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------CSCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc---------------CCCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHHH
Confidence 99999999999999998876542 12378999999999976542 44443221 1222222
Q ss_pred HHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHhhc
Q 015601 177 YPLILLVLFQVL---MTNVSLLGHLCGILSGFAYTYGFFN 213 (404)
Q Consensus 177 ~p~~~l~~~~l~---~~~~s~~~hl~G~l~G~l~~~~~l~ 213 (404)
+..+ .+...+. .+++++.+|++|+++|+++++.+.|
T Consensus 142 ~~~~-~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 142 FALI-WIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp HHHH-HHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence 2111 1222222 2578999999999999999986543
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.91 E-value=2.3e-24 Score=192.23 Aligned_cols=175 Identities=18% Similarity=0.287 Sum_probs=128.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccc-cccceeechhhhccCcchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHh
Q 015601 20 ESIPFFTSAVVIVCGTIYLICLLFGYDS-FYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIM 98 (404)
Q Consensus 20 ~~~P~vT~~li~~~v~~~~l~~~~~~~~-~~~l~~~p~~i~~~~q~WRL~Ts~f~h~~~~hll~n~~~l~~~g~~lE~~~ 98 (404)
.+.|++|+.++++++++|++....+... ...+.+.|..+ ..+|+||++|+.|+|.++.|+++||+.++.+|+.+|+.+
T Consensus 6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~ 84 (196)
T 2nr9_A 6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTF 84 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3558899999999999999887643211 33456666554 678999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccChhHHHHHHHHHHHhhcCCccceeeEeecchhhHHH
Q 015601 99 GSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYP 178 (404)
Q Consensus 99 Gs~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~sg~i~~l~~~~~~~~p~~~~~~~~~~~i~~~~~p 178 (404)
|+.+|+.+|+++++.++++++++. ....+|+||+++|++++.... +......+ .++.+...+.
T Consensus 85 G~~~~l~~yl~~~~~~~l~~~~~~---------------~~~~vGaSGai~gl~g~~~~~-~~~~~~~~-~~~~~~~~~~ 147 (196)
T 2nr9_A 85 GSVKLLMLYVVASAITGYVQNYVS---------------GPAFFGLSGVVYAVLGYVFIR-DKLNHHLF-DLPEGFFTML 147 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH---------------CSCCCCSHHHHHHHHHHHHHH-HHSSTTSC-CCCCSSTTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhc---------------CCCeeeHHHHHHHHHHHHHHH-HHhcchhh-cchHHHHHHH
Confidence 999999999999999998876542 122789999999999865432 21111111 1122222211
Q ss_pred HHHHHHHHHhc----cchhHHHHHHHHHHHHHHHHHhhc
Q 015601 179 LILLVLFQVLM----TNVSLLGHLCGILSGFAYTYGFFN 213 (404)
Q Consensus 179 ~~~l~~~~l~~----~~~s~~~hl~G~l~G~l~~~~~l~ 213 (404)
.+ .+...+.. +++++.+|++|+++|+++++.+.+
T Consensus 148 ~~-~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 185 (196)
T 2nr9_A 148 LV-GIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSK 185 (196)
T ss_dssp TT-TTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 11 11122222 378999999999999999987544
No 3
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.50 E-value=8.1e-14 Score=101.64 Aligned_cols=42 Identities=79% Similarity=1.029 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hcCC
Q 015601 363 VVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQG 404 (404)
Q Consensus 363 ~~~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~~~ 404 (404)
...+++|++|++|||+|++|++||++++||+|+|+||| ++++
T Consensus 27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 27 AASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 34699999999999999999999999999999999999 7654
No 4
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.48 E-value=2.4e-14 Score=97.95 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hcCC
Q 015601 366 DEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQG 404 (404)
Q Consensus 366 ~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~~~ 404 (404)
++.|++|++|||++++|++||++++||+|||+||| +|.|
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 78899999999999999999999999999999999 8875
No 5
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.43 E-value=1.9e-13 Score=101.72 Aligned_cols=41 Identities=39% Similarity=0.592 Sum_probs=38.5
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hcCC
Q 015601 364 VSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQG 404 (404)
Q Consensus 364 ~~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~~~ 404 (404)
+++++|++|++|||+|++|++||++++||+|+|+||| +|+|
T Consensus 28 ~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 28 PSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGG 69 (83)
T ss_dssp CCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3699999999999999999999999999999999999 8765
No 6
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.43 E-value=7.7e-14 Score=92.05 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=36.1
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hc
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQ 402 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~ 402 (404)
++++|++|++|||++++|++||++++||+|+|+||| ++
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 4 KSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 589999999999999999999999999999999999 64
No 7
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.40 E-value=1.9e-13 Score=92.46 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=35.6
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-h
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-S 401 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~ 401 (404)
.+++|++|++|||+|++|++||++++||+|+|+||| +
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 488999999999999999999999999999999999 5
No 8
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.39 E-value=4.9e-13 Score=95.16 Aligned_cols=40 Identities=25% Similarity=0.520 Sum_probs=37.5
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hcC
Q 015601 364 VSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQ 403 (404)
Q Consensus 364 ~~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~~ 403 (404)
.++++|++|++|||++++|++||++++||+|+|+||| +++
T Consensus 8 ~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~ 48 (63)
T 1wji_A 8 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSN 48 (63)
T ss_dssp SCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 4799999999999999999999999999999999999 653
No 9
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.38 E-value=8.1e-13 Score=97.02 Aligned_cols=41 Identities=27% Similarity=0.544 Sum_probs=38.4
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hcCC
Q 015601 364 VSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQG 404 (404)
Q Consensus 364 ~~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~~~ 404 (404)
+++++|++|++|||+|++|++||++++||+|+|+||| ++++
T Consensus 28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 28 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp SCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 4799999999999999999999999999999999999 7654
No 10
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1e-12 Score=88.25 Aligned_cols=40 Identities=28% Similarity=0.470 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hcC
Q 015601 363 VVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQ 403 (404)
Q Consensus 363 ~~~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~~ 403 (404)
..++++|++|++|||++++|++||++++ |+|+|+||| +|+
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 7 GVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp SSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 4479999999999999999999999995 999999999 763
No 11
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=6.7e-13 Score=94.97 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hc
Q 015601 363 VVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQ 402 (404)
Q Consensus 363 ~~~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~ 402 (404)
.+++++|++|++|||+|++|++||++++||+|+|+||| +|
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34799999999999999999999999999999999999 64
No 12
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.34 E-value=2.2e-12 Score=88.33 Aligned_cols=38 Identities=34% Similarity=0.576 Sum_probs=36.1
Q ss_pred CHHHHHHHHhcCC-CHHHHHHHHHHcCCCHHHHHHhh-hc
Q 015601 365 SDEEIQKLVSMGF-DKTQVEVALAAADGDLNVAVEIL-SQ 402 (404)
Q Consensus 365 ~~~~i~~l~~mg~-~~~~~~~al~~~~~~~~~a~~~l-~~ 402 (404)
-+++|++|++||| +|+++++||++++||+|+|+||| ++
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3889999999999 99999999999999999999999 75
No 13
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.32 E-value=1.6e-12 Score=89.40 Aligned_cols=38 Identities=39% Similarity=0.623 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHcCCCHHHHHHhh-hcC
Q 015601 366 DEEIQKLVSMGF-DKTQVEVALAAADGDLNVAVEIL-SQQ 403 (404)
Q Consensus 366 ~~~i~~l~~mg~-~~~~~~~al~~~~~~~~~a~~~l-~~~ 403 (404)
+++|++|++||| +|+++++||++++||+|+|+||| +++
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 678999999999 99999999999999999999999 654
No 14
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.31 E-value=6.3e-12 Score=91.65 Aligned_cols=39 Identities=36% Similarity=0.702 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHcCCCHHHHHHhh-hcCC
Q 015601 366 DEEIQKLVSMGF-DKTQVEVALAAADGDLNVAVEIL-SQQG 404 (404)
Q Consensus 366 ~~~i~~l~~mg~-~~~~~~~al~~~~~~~~~a~~~l-~~~~ 404 (404)
+++|++|++||| +|+++++||++++||+|+||||| ++.+
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~ 70 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASG 70 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 889999999999 78889999999999999999999 6543
No 15
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.30 E-value=2.1e-12 Score=92.45 Aligned_cols=41 Identities=24% Similarity=0.427 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHc-CCCHHHHHHhh-hcC
Q 015601 363 VVSDEEIQKLVSMGFDKTQVEVALAAA-DGDLNVAVEIL-SQQ 403 (404)
Q Consensus 363 ~~~~~~i~~l~~mg~~~~~~~~al~~~-~~~~~~a~~~l-~~~ 403 (404)
..++++|++|++|||++++|++||+++ +||+|+|+||| +|.
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~ 49 (64)
T 1whc_A 7 GAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHE 49 (64)
T ss_dssp CCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 346789999999999999999999999 69999999999 654
No 16
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.29 E-value=3.1e-12 Score=91.49 Aligned_cols=40 Identities=33% Similarity=0.583 Sum_probs=37.1
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCC-CHHHHHHhh-hcCC
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADG-DLNVAVEIL-SQQG 404 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~-~~~~a~~~l-~~~~ 404 (404)
++++|++|++|||++++|++||++++| |+|+|+||| +|++
T Consensus 19 ~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 19 HGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 578899999999999999999999999 999999999 7653
No 17
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.29 E-value=2.9e-12 Score=85.12 Aligned_cols=36 Identities=28% Similarity=0.486 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHcCCCHHHHHHhh-h
Q 015601 366 DEEIQKLVSMGF-DKTQVEVALAAADGDLNVAVEIL-S 401 (404)
Q Consensus 366 ~~~i~~l~~mg~-~~~~~~~al~~~~~~~~~a~~~l-~ 401 (404)
+++|++|++||| +++++++||++++||+|+|+||| +
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 789999999999 57778999999999999999999 6
No 18
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=4.5e-12 Score=93.31 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHcCC-CHHHHHHhh-hcC
Q 015601 363 VVSDEEIQKLVSMGFDKTQVEVALAAADG-DLNVAVEIL-SQQ 403 (404)
Q Consensus 363 ~~~~~~i~~l~~mg~~~~~~~~al~~~~~-~~~~a~~~l-~~~ 403 (404)
.+++++|++|++|||++++|++||++++| |+|+|+||| +|.
T Consensus 7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 7 GLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp SSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 35799999999999999999999999996 899999999 654
No 19
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.27 E-value=4.8e-12 Score=82.14 Aligned_cols=36 Identities=50% Similarity=0.733 Sum_probs=34.5
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
.+++|++|++|||++++|++||++++||+++|++||
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 378999999999999999999999999999999997
No 20
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.25 E-value=3.7e-12 Score=90.93 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=36.7
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHcCC-CHHHHHHhh-hcC
Q 015601 364 VSDEEIQKLVSMGFDKTQVEVALAAADG-DLNVAVEIL-SQQ 403 (404)
Q Consensus 364 ~~~~~i~~l~~mg~~~~~~~~al~~~~~-~~~~a~~~l-~~~ 403 (404)
.+++.|++|++|||++++|++||++++| |+|+|+||| +|.
T Consensus 8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 8 SSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHC 49 (64)
T ss_dssp CSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 3678899999999999999999999987 999999999 664
No 21
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.25 E-value=2.4e-12 Score=86.05 Aligned_cols=39 Identities=33% Similarity=0.477 Sum_probs=37.0
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hcC
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQ 403 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~~ 403 (404)
++++|++|++|||+|++|++||.+|+||+++|++|| +|.
T Consensus 4 e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 4 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp CHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 589999999999999999999999999999999999 764
No 22
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.23 E-value=8e-12 Score=86.99 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHcCCCHHHHHHhh-hcC
Q 015601 366 DEEIQKLVSMGF-DKTQVEVALAAADGDLNVAVEIL-SQQ 403 (404)
Q Consensus 366 ~~~i~~l~~mg~-~~~~~~~al~~~~~~~~~a~~~l-~~~ 403 (404)
+++|++|++||| +|+++++||++++||+|+|+||| ++.
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 779999999999 58888999999999999999999 754
No 23
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=92.77 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hcC
Q 015601 363 VVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQ 403 (404)
Q Consensus 363 ~~~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~~ 403 (404)
.+++++|++|++|||++++|++||++++||+|+|+||| +|.
T Consensus 27 ~~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~ 68 (83)
T 2dai_A 27 RVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHA 68 (83)
T ss_dssp SCCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 34799999999999999999999999999999999999 654
No 24
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.21 E-value=1.2e-11 Score=84.97 Aligned_cols=38 Identities=37% Similarity=0.481 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCHH-HHHHHHHHcCCCHHHHHHhh-hcC
Q 015601 366 DEEIQKLVSMGFDKT-QVEVALAAADGDLNVAVEIL-SQQ 403 (404)
Q Consensus 366 ~~~i~~l~~mg~~~~-~~~~al~~~~~~~~~a~~~l-~~~ 403 (404)
+++|++|++|||+++ .+++||++++||+|+|+||| +++
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 889999999999555 57999999999999999999 654
No 25
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=99.19 E-value=2.6e-11 Score=80.16 Aligned_cols=36 Identities=36% Similarity=0.505 Sum_probs=34.7
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
.+++|++||+|||+|++|++||+.++||+|.|.+.|
T Consensus 11 ~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniL 46 (52)
T 2ooa_A 11 VDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSIL 46 (52)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 479999999999999999999999999999999998
No 26
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.15 E-value=5.7e-11 Score=78.97 Aligned_cols=36 Identities=31% Similarity=0.533 Sum_probs=34.8
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
.+++|++||+|||+|++|++||..++||+|.|.+.|
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL 44 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNIL 44 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHH
Confidence 478999999999999999999999999999999998
No 27
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.15 E-value=7.6e-11 Score=88.85 Aligned_cols=41 Identities=29% Similarity=0.439 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHcC-CCHHHHHHhh-hcC
Q 015601 363 VVSDEEIQKLVSMGFDKTQVEVALAAAD-GDLNVAVEIL-SQQ 403 (404)
Q Consensus 363 ~~~~~~i~~l~~mg~~~~~~~~al~~~~-~~~~~a~~~l-~~~ 403 (404)
.+++++|++|++|||++++|++||++++ ||+|+|+||| +|.
T Consensus 27 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 27 VANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHM 69 (84)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4479999999999999999999999996 7999999999 764
No 28
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.13 E-value=4.6e-11 Score=90.02 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=36.8
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hcC
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQ 403 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~~ 403 (404)
++++|++|++|||+|++|++||++++||+|+|+||| +|.
T Consensus 21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 21 MSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 488999999999999999999999999999999999 764
No 29
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=99.12 E-value=6.3e-11 Score=92.79 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=35.7
Q ss_pred CHHHHHHHHhcCC-CHHHHHHHHHHcCCCHHHHHHhh-hcC
Q 015601 365 SDEEIQKLVSMGF-DKTQVEVALAAADGDLNVAVEIL-SQQ 403 (404)
Q Consensus 365 ~~~~i~~l~~mg~-~~~~~~~al~~~~~~~~~a~~~l-~~~ 403 (404)
-+++|++|+|||| +|+++++||++++||+|+||||| +.+
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 3889999999999 67899999999999999999999 654
No 30
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.11 E-value=5.7e-11 Score=84.45 Aligned_cols=38 Identities=42% Similarity=0.475 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHcCCCHHHHHHhh-hcC
Q 015601 366 DEEIQKLVSMGFD-KTQVEVALAAADGDLNVAVEIL-SQQ 403 (404)
Q Consensus 366 ~~~i~~l~~mg~~-~~~~~~al~~~~~~~~~a~~~l-~~~ 403 (404)
+++|++|++|||. ++.+++||++++||+|+||||| +++
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~ 59 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQ 59 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 6699999999995 5555999999999999999999 654
No 31
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.96 E-value=6.5e-10 Score=73.81 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=34.9
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
.|++|++||+|||+|+.|++||..++||+|.|.+.|
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiL 42 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNIL 42 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHH
Confidence 489999999999999999999999999999999998
No 32
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.90 E-value=2.9e-09 Score=102.61 Aligned_cols=38 Identities=29% Similarity=0.465 Sum_probs=36.1
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hc
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQ 402 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~ 402 (404)
.+++|++|++|||+|++|++||++++||+|||+||| ++
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~g 206 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 206 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 489999999999999999999999999999999999 53
No 33
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.88 E-value=1.7e-09 Score=88.75 Aligned_cols=40 Identities=30% Similarity=0.469 Sum_probs=37.5
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hcC
Q 015601 364 VSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQ 403 (404)
Q Consensus 364 ~~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~~ 403 (404)
.++++|++|++|||++++|++||++++||+++|+||| ++.
T Consensus 77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~ 117 (126)
T 2lbc_A 77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHP 117 (126)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3689999999999999999999999999999999999 754
No 34
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.88 E-value=2.4e-09 Score=68.41 Aligned_cols=35 Identities=31% Similarity=0.555 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
|++|++|++|||+++.|++||..++||+|.|.+.|
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL 39 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNIL 39 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHH
Confidence 78999999999999999999999999999999998
No 35
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.84 E-value=2.4e-09 Score=86.02 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=35.9
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hcC
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQ 403 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~~ 403 (404)
+.++|.+|+||||++++|++||+.++||.|||+||| .+-
T Consensus 76 ~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 76 FLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 357899999999999999999999999999999999 643
No 36
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.71 E-value=1.3e-08 Score=78.34 Aligned_cols=35 Identities=29% Similarity=0.667 Sum_probs=34.4
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVSM-GFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~m-g~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
+++|++|+|| ||++++|+.||..|+||+++|+++|
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~L 75 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVL 75 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7899999999 9999999999999999999999999
No 37
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.69 E-value=1.2e-08 Score=90.51 Aligned_cols=36 Identities=42% Similarity=0.656 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-h
Q 015601 366 DEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-S 401 (404)
Q Consensus 366 ~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~ 401 (404)
+++|++|++|||+|++|++||++++||+++|+|+| +
T Consensus 164 eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 89999999999999999999999999999999999 6
No 38
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.67 E-value=2.7e-08 Score=66.19 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHcCC-CHHHHHHhh
Q 015601 363 VVSDEEIQKLVSMGFDKTQVEVALAAADG-DLNVAVEIL 400 (404)
Q Consensus 363 ~~~~~~i~~l~~mg~~~~~~~~al~~~~~-~~~~a~~~l 400 (404)
.++...+++|+||||+++.|++||+++|| .++.|+|||
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL 45 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYI 45 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHH
Confidence 34577899999999999999999999976 699999999
No 39
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.52 E-value=7.4e-08 Score=65.07 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVSMGF-DKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~mg~-~~~~~~~al~~~~~~~~~a~~~l 400 (404)
..++++|.|||| +++.-++||++++||+++||+.|
T Consensus 10 a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~L 45 (54)
T 2cp8_A 10 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTEL 45 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 568999999999 99999999999999999999999
No 40
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.51 E-value=6.3e-08 Score=79.27 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=35.9
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCC-CHHHHHHhh-hcC
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADG-DLNVAVEIL-SQQ 403 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~-~~~~a~~~l-~~~ 403 (404)
+++.+++|++|||+++.|++||++++| |+|.|++|| .|.
T Consensus 3 d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~ 43 (126)
T 2lbc_A 3 DESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHM 43 (126)
T ss_dssp CTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGG
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 578999999999999999999999977 999999999 653
No 41
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.42 E-value=2e-07 Score=79.08 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=35.9
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hc
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQ 402 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~ 402 (404)
++++|++|++|||+|++|++||.+|+||++.|++|| ++
T Consensus 130 e~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 130 DDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 478999999999999999999999999999999999 64
No 42
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.41 E-value=2.2e-07 Score=74.55 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hc
Q 015601 366 DEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQ 402 (404)
Q Consensus 366 ~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~ 402 (404)
.+.|++|++|||+++.|++||+++++|+|+|+||| .|
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 67899999999999999999999999999999999 54
No 43
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=98.32 E-value=4.4e-07 Score=82.87 Aligned_cols=36 Identities=39% Similarity=0.610 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-h
Q 015601 366 DEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-S 401 (404)
Q Consensus 366 ~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~ 401 (404)
+++|++|+||||+|++|+.||++++||+++|+|+| +
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 78999999999999999999999999999999999 5
No 44
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.31 E-value=1.4e-07 Score=90.94 Aligned_cols=42 Identities=31% Similarity=0.376 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hcCC
Q 015601 363 VVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQG 404 (404)
Q Consensus 363 ~~~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~~~ 404 (404)
..++++|++|++|||++++|++||++|+||+++|+||| +|.|
T Consensus 323 ~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~~~ 365 (368)
T 1oqy_A 323 PQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNF 365 (368)
T ss_dssp TTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhCcC
Confidence 34689999999999999999999999999999999999 7643
No 45
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.79 E-value=3.4e-05 Score=54.19 Aligned_cols=38 Identities=32% Similarity=0.316 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHhc-CCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 363 VVSDEEIQKLVSM-GFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 363 ~~~~~~i~~l~~m-g~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
..+.+.|+.|.+. |....+|++||.+++||++.|++||
T Consensus 7 ~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L 45 (64)
T 2cp9_A 7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL 45 (64)
T ss_dssp CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3457889999886 9999999999999999999999999
No 46
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.71 E-value=4.5e-05 Score=53.00 Aligned_cols=38 Identities=24% Similarity=0.445 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 363 VVSDEEIQKLVSM--GFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 363 ~~~~~~i~~l~~m--g~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
...|+++++|.+| .++++.++++|++++||+|+|++-|
T Consensus 7 ~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~L 46 (59)
T 1wgl_A 7 GCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSL 46 (59)
T ss_dssp SSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3469999999999 7899999999999999999999999
No 47
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.53 E-value=0.0001 Score=48.93 Aligned_cols=35 Identities=23% Similarity=0.545 Sum_probs=33.8
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVSM--GFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~m--g~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
+++++.|.|| ..++++++.+|++++||+|+|++.|
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~L 41 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLL 41 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7899999999 8999999999999999999999998
No 48
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=97.47 E-value=1.7e-05 Score=70.74 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
+++|+++++|||+++++++||++++||+++|+|.|
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l 212 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANWNETLALNTL 212 (216)
T ss_dssp -----------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 78999999999999999999999999999999998
No 49
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.36 E-value=0.00011 Score=78.68 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh-hc
Q 015601 363 VVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQ 402 (404)
Q Consensus 363 ~~~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l-~~ 402 (404)
..+++.|++|.+|||++++|++||++++||+|||+||+ ++
T Consensus 718 ~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 718 PPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp -CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 34799999999999999999999999999999999999 75
No 50
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=97.17 E-value=0.00056 Score=44.96 Aligned_cols=39 Identities=21% Similarity=0.449 Sum_probs=34.2
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHcCCCHHHHHHhh-hcCC
Q 015601 366 DEEIQKLVSM-GFDKTQVEVALAAADGDLNVAVEIL-SQQG 404 (404)
Q Consensus 366 ~~~i~~l~~m-g~~~~~~~~al~~~~~~~~~a~~~l-~~~~ 404 (404)
+++|++.++. |-+++.|++-|+.++||+|+|++.. .++|
T Consensus 6 ~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~~ 46 (46)
T 1v92_A 6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGG 46 (46)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 6789999885 8999999999999999999999977 5544
No 51
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=97.01 E-value=0.00074 Score=43.90 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=31.9
Q ss_pred CHHHHHHHHhc-CCCH-HHHHHHHHHcCCCHHHHHHh
Q 015601 365 SDEEIQKLVSM-GFDK-TQVEVALAAADGDLNVAVEI 399 (404)
Q Consensus 365 ~~~~i~~l~~m-g~~~-~~~~~al~~~~~~~~~a~~~ 399 (404)
.+++|.+++++ |.+. ++|+.-|+++|||++.|+.-
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 38899999998 9987 99999999999999999864
No 52
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=97.00 E-value=0.00044 Score=45.56 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCHHHH--HHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVSMGFDKTQV--EVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~mg~~~~~~--~~al~~~~~~~~~a~~~l 400 (404)
++.|++|++|||+.+-. .+.|+..++|+.+|+|-|
T Consensus 11 ~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 11 IESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 67899999999998886 599999999999999998
No 53
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.84 E-value=0.0016 Score=45.76 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=32.4
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVSM-GFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~m-g~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
+++|++.+++ |-++++|++-|++++||+|+|++..
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7889999885 9999999999999999999999976
No 54
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=96.64 E-value=0.0028 Score=49.06 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 363 VVSDEEIQKLVS-MGFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 363 ~~~~~~i~~l~~-mg~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
..+++.|+.+++ .|.+|++|++||++|+||+-.|+-+|
T Consensus 63 ~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 457899999976 69999999999999999999999876
No 55
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.53 E-value=0.0067 Score=43.00 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=33.5
Q ss_pred CHHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 365 SDEEIQKLVSM--GFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 365 ~~~~i~~l~~m--g~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
-++++++|.+| -++++.++.+|++++||+|+|+|-|
T Consensus 18 ~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~L 55 (67)
T 2dhy_A 18 FNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQL 55 (67)
T ss_dssp SHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 38899999999 5699999999999999999999988
No 56
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=96.41 E-value=0.002 Score=57.16 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=28.1
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCCCHH
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADGDLN 394 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~~~~ 394 (404)
++++|+++++|||++++|+.||+.++||..
T Consensus 169 ~~~~v~~~~~mg~~~~~~~~al~~~~~~~~ 198 (215)
T 1tte_A 169 DHDLIDEFESQGFEKDKIVEVLRRLGVKSL 198 (215)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHSCCSSC
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHcCCCcc
Confidence 588999999999999999999999999973
No 57
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.39 E-value=0.005 Score=43.67 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=31.7
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 367 EEIQKLVSM-GFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 367 ~~i~~l~~m-g~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
++|++.++. |-++++|++.|++++||+|+|++..
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 789999886 9999999999999999999999976
No 58
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.38 E-value=0.0052 Score=43.76 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=32.0
Q ss_pred HHHHHHHHhc-C-CCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVSM-G-FDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~m-g-~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
+++|++.+++ | -++++|++.|+.++||+|.|++-.
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~f 55 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDR 55 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6789999886 8 789999999999999999999876
No 59
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=94.84 E-value=0.017 Score=47.61 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=32.6
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVSMG-FDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~mg-~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
..|++.|++.| |+++++.+||.+++||++.|+-.|
T Consensus 103 ~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 103 RRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 56899999999 589999999999999999999888
No 60
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=94.49 E-value=0.025 Score=60.50 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=34.3
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHcCCC-HHHHHHhh-hc
Q 015601 364 VSDEEIQKLVSMGFDKTQVEVALAAADGD-LNVAVEIL-SQ 402 (404)
Q Consensus 364 ~~~~~i~~l~~mg~~~~~~~~al~~~~~~-~~~a~~~l-~~ 402 (404)
.+++.+++|++|||++..+++||.+++|+ .|.|++|| +|
T Consensus 651 ~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~h 691 (854)
T 3ihp_A 651 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSH 691 (854)
T ss_dssp --CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhc
Confidence 46889999999999999999999999764 99999999 65
No 61
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=92.86 E-value=0.18 Score=35.94 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=32.8
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVSM--GFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~m--g~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
+++|+++.|+ -+.+..++++|+..++|+|++++.|
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~L 50 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNI 50 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 7889999998 6899999999999999999999998
No 62
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=92.39 E-value=0.066 Score=35.97 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=29.4
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVSM--GFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~m--g~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
++.+++|.+| .++++-.+..|++++||.+.|||-|
T Consensus 13 ~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaL 49 (54)
T 1p3q_Q 13 KDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDAL 49 (54)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC--
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6789999999 8999999999999999999999988
No 63
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.49 E-value=0.25 Score=35.02 Aligned_cols=37 Identities=27% Similarity=0.554 Sum_probs=31.1
Q ss_pred HHHHHHHHhc-CCCHHHH-HHHHHHcCCCHHHHHHhh-hc
Q 015601 366 DEEIQKLVSM-GFDKTQV-EVALAAADGDLNVAVEIL-SQ 402 (404)
Q Consensus 366 ~~~i~~l~~m-g~~~~~~-~~al~~~~~~~~~a~~~l-~~ 402 (404)
+--+++|.|. |...-+. .+||++.+||+..||.+| ++
T Consensus 25 q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 25 QTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 5578999986 9876664 569999999999999999 65
No 64
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=90.97 E-value=0.45 Score=30.71 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHh--cCCCHHHHHHHHHHcCCCHHHHHHhh-hc
Q 015601 363 VVSDEEIQKLVS--MGFDKTQVEVALAAADGDLNVAVEIL-SQ 402 (404)
Q Consensus 363 ~~~~~~i~~l~~--mg~~~~~~~~al~~~~~~~~~a~~~l-~~ 402 (404)
.++|+.|++... -|=+|+-.++-|+.+|=|++.||+-| +.
T Consensus 7 ~vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 7 VIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp GSCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 456999998755 59999999999999999999999988 53
No 65
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=88.13 E-value=0.83 Score=31.31 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=28.7
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVS-MGFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~-mg~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
++.|.++.+ -|-+.+-+.++|+.++||.++|+.-.
T Consensus 8 ~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 43 (59)
T 1oai_A 8 QEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF 43 (59)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 455666644 49999999999999999999998753
No 66
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=87.57 E-value=0.76 Score=31.23 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=28.9
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVS-MGFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~-mg~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
++.|.++.. -|-+.+-++++|+.++||.++|+.-.
T Consensus 7 ~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F 42 (57)
T 2jp7_A 7 LELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGF 42 (57)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 455666644 49999999999999999999998754
No 67
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=86.92 E-value=1 Score=31.12 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHc
Q 015601 366 DEEIQKLVSMGFDKTQVEVALAAA 389 (404)
Q Consensus 366 ~~~i~~l~~mg~~~~~~~~al~~~ 389 (404)
+|.++-|+.+||++.+|.+|+++.
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 788999999999999999999876
No 68
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=84.74 E-value=0.19 Score=39.37 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=30.7
Q ss_pred HHHHHHHHhc-CCC-HHHHHHHHHHcCCCHHHHHHhh-hc
Q 015601 366 DEEIQKLVSM-GFD-KTQVEVALAAADGDLNVAVEIL-SQ 402 (404)
Q Consensus 366 ~~~i~~l~~m-g~~-~~~~~~al~~~~~~~~~a~~~l-~~ 402 (404)
+--++||.|. |.. .+.-.+||++++||++.||.+| .+
T Consensus 19 Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 19 QMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 4468999887 886 4556779999999999999999 54
No 69
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=79.29 E-value=2.4 Score=30.90 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHhh-hc
Q 015601 376 GFDKTQVEVALAAADGDLNVAVEIL-SQ 402 (404)
Q Consensus 376 g~~~~~~~~al~~~~~~~~~a~~~l-~~ 402 (404)
-.++.+.++|--+++-|+++|++++ ++
T Consensus 48 sV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 48 AVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp TSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3899999999999999999999999 64
No 70
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=74.16 E-value=2.4 Score=34.88 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 377 FDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 377 ~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
++..+|++||.+++||.++||..+
T Consensus 75 ~s~~EAr~Aw~~~~Gd~~~Av~~c 98 (162)
T 4dbg_B 75 FSCQEARRAWLDRHGNLDEAVEEC 98 (162)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHccCChHHHHHHH
Confidence 788999999999999999999876
No 71
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=67.27 E-value=2.8 Score=28.74 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 377 FDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 377 ~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
|+++..++||+.++||..+|++.|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 567889999999999999999988
No 72
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=64.73 E-value=3.3 Score=30.28 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHcCCCHHHHHHhh
Q 015601 378 DKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 378 ~~~~~~~al~~~~~~~~~a~~~l 400 (404)
+++..++||+.++||..+|++.|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 46677899999999999999988
No 73
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=60.66 E-value=9.3 Score=33.08 Aligned_cols=24 Identities=17% Similarity=0.473 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHc
Q 015601 366 DEEIQKLVSMGFDKTQVEVALAAA 389 (404)
Q Consensus 366 ~~~i~~l~~mg~~~~~~~~al~~~ 389 (404)
+|.++-|+.+||++.+|.+|+++.
T Consensus 161 ~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 161 QEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 688999999999999999999987
No 74
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=56.69 E-value=13 Score=32.41 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHc
Q 015601 366 DEEIQKLVSMGFDKTQVEVALAAA 389 (404)
Q Consensus 366 ~~~i~~l~~mg~~~~~~~~al~~~ 389 (404)
+|.++-|+.+||++.+|.+|+++.
T Consensus 165 ~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 165 SPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 689999999999999999999875
No 75
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=52.96 E-value=3.4 Score=37.10 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHcCCCHHHHHHh
Q 015601 366 DEEIQKLVSM-GFDKTQVEVALAAADGDLNVAVEI 399 (404)
Q Consensus 366 ~~~i~~l~~m-g~~~~~~~~al~~~~~~~~~a~~~ 399 (404)
++.|.++.+. |-+.+-+.++|+.++||.|+|+.-
T Consensus 199 ~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~~ 233 (250)
T 1jkg_B 199 QEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQA 233 (250)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4567777554 899999999999999999999865
No 76
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=47.19 E-value=7.3 Score=28.84 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 377 FDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 377 ~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
++++..++||+.++||..+|++.|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 567888999999999999999988
No 77
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=45.73 E-value=10 Score=25.68 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 377 FDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 377 ~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
++++..++||+.+ ||..+|++.|
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh
Confidence 3567788999999 9999999988
No 78
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=44.71 E-value=43 Score=25.25 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=27.7
Q ss_pred HHHHHHH-hcCCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 367 EEIQKLV-SMGFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 367 ~~i~~l~-~mg~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
+.|++|| +..-+--.|.+||-++.||++.|-.+|
T Consensus 15 ~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL 49 (111)
T 3k6g_A 15 KIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFL 49 (111)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHH
Confidence 3445554 357788889999999999999999999
No 79
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=44.46 E-value=28 Score=24.39 Aligned_cols=29 Identities=10% Similarity=0.160 Sum_probs=25.8
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCCCH
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADGDL 393 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~~~ 393 (404)
-+.+|+-|..-|.++++...||+.++.+.
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra~~~~ 63 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQSGTAA 63 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHccCCC
Confidence 37899999999999999999999987653
No 80
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=43.84 E-value=11 Score=28.38 Aligned_cols=24 Identities=8% Similarity=0.234 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 377 FDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 377 ~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
++++..++||+.++||..+|++.|
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 456778899999999999999988
No 81
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=40.27 E-value=21 Score=27.22 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHH
Q 015601 367 EEIQKLVSMGFDKTQVEVALAA 388 (404)
Q Consensus 367 ~~i~~l~~mg~~~~~~~~al~~ 388 (404)
..|+...+|||++..++++..+
T Consensus 29 ~vV~~alemGf~~~~V~~~v~~ 50 (104)
T 2kna_A 29 PMVQEAIRMGFSFKDIKKIMEE 50 (104)
T ss_dssp THHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHH
Confidence 3688899999999999988876
No 82
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=38.01 E-value=56 Score=21.97 Aligned_cols=34 Identities=9% Similarity=0.129 Sum_probs=29.7
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVSM--GFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~m--g~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
++.++++.+| -+++++.+.-|+.+ |++|.-+|-+
T Consensus 18 ~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienI 53 (58)
T 4g3o_A 18 NAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNI 53 (58)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHH
Confidence 5678888888 69999999999998 9999999876
No 83
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=37.97 E-value=38 Score=22.46 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=22.5
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHc
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAA 389 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~ 389 (404)
-+.+|+-|..-|.+.++...||+.+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3789999999999999999999864
No 84
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=36.88 E-value=55 Score=29.90 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=32.5
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 365 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 365 ~~~~i~~l~~mg~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
++..++.+..|||++++.++.|+...+|.-.|.=+|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~l 324 (328)
T 3fe3_A 289 DQKRIDIMVGMGYSQEEIQESLSKMKYDEITATYLL 324 (328)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHcCCCCHHHHHHHH
Confidence 577899999999999999999999999998888766
No 85
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=34.64 E-value=33 Score=32.18 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=32.5
Q ss_pred CCHHHHHHHHhc-CCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 364 VSDEEIQKLVSM-GFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 364 ~~~~~i~~l~~m-g~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
.+|++..+..+. |=++..|..-|+..+||+|||++-.
T Consensus 44 ~~~~~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~ 81 (362)
T 4gew_A 44 SDEQKLHEFAIITATDEAFAQSILQDVDWDLKKALDVF 81 (362)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHH
T ss_pred chHHHHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHH
Confidence 358888888776 8899999999999999999999854
No 86
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=34.46 E-value=28 Score=32.51 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHcCCC
Q 015601 366 DEEIQKLVSMGFDKTQVEVALAAADGD 392 (404)
Q Consensus 366 ~~~i~~l~~mg~~~~~~~~al~~~~~~ 392 (404)
++.|+.|++|||+.+++.++|...-+-
T Consensus 47 e~~l~~L~d~Gfs~~~i~~il~~~P~i 73 (335)
T 4fp9_B 47 ERVMSSLLDMGFSNAHINELLSVRRGA 73 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhCccc
Confidence 778999999999999999999887544
No 87
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.22 E-value=71 Score=21.47 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=30.8
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 366 DEEIQKLVSM--GFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 366 ~~~i~~l~~m--g~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
++.++++.+| -+++++.+.-|+.++ ++|.-+|-+
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienI 49 (58)
T 2ejs_A 14 NAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNI 49 (58)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHH
Confidence 7889999999 799999999999996 999999876
No 88
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.11 E-value=1.1e+02 Score=20.78 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=31.0
Q ss_pred CHHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 365 SDEEIQKLVSM--GFDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 365 ~~~~i~~l~~m--g~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
.+..++++.+| -++++..+.-|+.++ ++|.-+|-+
T Consensus 13 l~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienI 49 (61)
T 2ekf_A 13 LATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNL 49 (61)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHH
Confidence 47889999999 799999999999995 999998876
No 89
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=31.22 E-value=10 Score=32.49 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHc
Q 015601 366 DEEIQKLVSMGFDKTQVEVALAAA 389 (404)
Q Consensus 366 ~~~i~~l~~mg~~~~~~~~al~~~ 389 (404)
+|.++-|+.+||++.+|.+|+++.
T Consensus 147 ~ea~~AL~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 147 EEAVMALAALGFKEAQARAVVLDL 170 (191)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578999999999999999999886
No 90
>2l3n_A DNA-binding protein RAP1, telomere length regulat; TAZ1; NMR {Schizosaccharomyces pombe}
Probab=29.95 E-value=1.1e+02 Score=21.67 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=31.0
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHcCCCHHHHHHhh-hcC
Q 015601 366 DEEIQKLVSM-GFDKTQVEVALAAADGDLNVAVEIL-SQQ 403 (404)
Q Consensus 366 ~~~i~~l~~m-g~~~~~~~~al~~~~~~~~~a~~~l-~~~ 403 (404)
+|.|+++..- --.++|-.+|++.++|.+..|+.-| +.|
T Consensus 15 deaidnilrytnsteqqfleamestggrvriaiakllskq 54 (104)
T 2l3n_A 15 DEAIDNILRYTNSTEQQFLEAMESTGGRVRIAIAKLLSKQ 54 (104)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHTTCHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccchHHHHHHHHHhcCCeeehHHHHHHhhc
Confidence 6778887765 4577789999999999999999888 543
No 91
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=24.24 E-value=38 Score=26.71 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=11.3
Q ss_pred CCCCCCccccCCCC
Q 015601 292 RFPGRGRTLSSSQS 305 (404)
Q Consensus 292 ~~~g~g~~lg~~~~ 305 (404)
.|.|.||+||+...
T Consensus 9 ~F~G~G~~Lgs~~p 22 (127)
T 1s3s_G 9 AFTGEGQKLGSTAP 22 (127)
T ss_dssp -CCSCCCCCCSSCC
T ss_pred CceecCeECCCCCC
Confidence 59999999998643
No 92
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=22.02 E-value=1.3e+02 Score=20.47 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=27.6
Q ss_pred HHHHHHH-HhcCCCHHHHHHHHHHcCCCHHHHHHh
Q 015601 366 DEEIQKL-VSMGFDKTQVEVALAAADGDLNVAVEI 399 (404)
Q Consensus 366 ~~~i~~l-~~mg~~~~~~~~al~~~~~~~~~a~~~ 399 (404)
+..+... ...|-+...||.-|+--|||+..|.+=
T Consensus 18 davls~fvrstgaepgLaRDlleGKnWDl~AAL~D 52 (73)
T 2l2d_A 18 DAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSD 52 (73)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhh
Confidence 4445554 567999999999999999999999863
No 93
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=21.81 E-value=1.2e+02 Score=17.54 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH
Q 015601 366 DEEIQKLVSMGFDKTQVEVALA 387 (404)
Q Consensus 366 ~~~i~~l~~mg~~~~~~~~al~ 387 (404)
+|-+..|.+-|.++|.-++||.
T Consensus 10 ~eLL~aLL~SGlsKe~LiqaL~ 31 (32)
T 1g2y_A 10 TEMLAALLESGLSKEALIQALG 31 (32)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHC
T ss_pred HHHHHHHHHcCCcHHHHHHHhc
Confidence 5778889999999999999984
No 94
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.58 E-value=43 Score=23.46 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHhh
Q 015601 377 FDKTQVEVALAAADGDLNVAVEIL 400 (404)
Q Consensus 377 ~~~~~~~~al~~~~~~~~~a~~~l 400 (404)
.+++-|-+.++++++|.|....+|
T Consensus 24 vPd~VVsqc~~qN~~Nl~aC~~~L 47 (75)
T 2dae_A 24 VPEVVVSRCMLQNNNNLDACCAVL 47 (75)
T ss_dssp SCHHHHHHHHTTTTSCSHHHHHHH
T ss_pred CcHHHHHHHHHHhccCHHHHHHHH
Confidence 456777778888888888887777
Done!