Query 015605
Match_columns 403
No_of_seqs 228 out of 1440
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 5E-114 1E-118 865.6 34.0 379 23-401 30-420 (524)
2 PLN02998 beta-glucosidase 100.0 6E-109 1E-113 849.9 37.3 395 6-400 7-404 (497)
3 PLN02849 beta-glucosidase 100.0 1E-107 3E-112 841.5 37.9 392 3-400 3-397 (503)
4 PLN02814 beta-glucosidase 100.0 3E-107 6E-112 838.8 36.0 374 24-400 22-399 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 5E-104 1E-108 788.9 33.9 355 28-400 2-367 (460)
6 TIGR01233 lacG 6-phospho-beta- 100.0 2E-101 3E-106 792.5 36.2 358 28-400 2-379 (467)
7 PRK13511 6-phospho-beta-galact 100.0 2E-101 4E-106 793.8 35.4 357 28-400 3-380 (469)
8 PRK09593 arb 6-phospho-beta-gl 100.0 2E-101 5E-106 792.8 35.3 355 27-400 3-380 (478)
9 PF00232 Glyco_hydro_1: Glycos 100.0 4E-102 8E-107 798.6 23.0 360 27-401 2-368 (455)
10 PRK09589 celA 6-phospho-beta-g 100.0 2E-100 5E-105 784.8 35.9 353 29-400 3-379 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 2E-99 4E-104 777.4 37.4 355 26-400 2-380 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 9.2E-99 2E-103 771.3 35.5 353 29-400 3-377 (474)
13 TIGR03356 BGL beta-galactosida 100.0 9.5E-98 2E-102 758.4 34.6 346 30-400 1-349 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.3 2.2E-12 4.9E-17 130.0 7.8 109 80-192 10-141 (374)
15 PF00150 Cellulase: Cellulase 99.3 9.6E-12 2.1E-16 119.3 8.8 109 81-192 22-134 (281)
16 smart00633 Glyco_10 Glycosyl h 99.2 7.6E-10 1.6E-14 105.9 17.8 82 102-191 2-85 (254)
17 PF07745 Glyco_hydro_53: Glyco 98.9 6.9E-08 1.5E-12 95.3 17.2 207 83-401 27-242 (332)
18 COG1874 LacA Beta-galactosidas 98.4 4.5E-07 9.7E-12 96.6 8.3 107 81-191 31-163 (673)
19 COG2730 BglC Endoglucanase [Ca 98.2 6E-06 1.3E-10 84.4 9.2 117 75-191 63-193 (407)
20 PF01229 Glyco_hydro_39: Glyco 98.0 1.3E-05 2.9E-10 83.7 8.7 106 82-192 41-168 (486)
21 PRK10150 beta-D-glucuronidase; 98.0 0.00031 6.8E-09 75.4 18.0 93 81-190 314-419 (604)
22 COG3867 Arabinogalactan endo-1 98.0 0.0025 5.5E-08 61.2 21.2 134 29-191 34-183 (403)
23 PF00331 Glyco_hydro_10: Glyco 97.8 7.6E-05 1.6E-09 73.9 9.6 124 30-191 6-136 (320)
24 PF01301 Glyco_hydro_35: Glyco 97.5 8E-05 1.7E-09 73.7 4.6 97 81-178 25-132 (319)
25 PF01373 Glyco_hydro_14: Glyco 97.4 0.00013 2.8E-09 73.3 4.0 106 79-190 15-151 (402)
26 PLN02161 beta-amylase 97.4 0.00049 1.1E-08 70.6 7.5 111 76-191 113-262 (531)
27 PLN02803 beta-amylase 97.4 0.00047 1E-08 71.0 7.4 107 80-191 107-252 (548)
28 PLN03059 beta-galactosidase; P 97.3 0.00047 1E-08 75.2 6.7 94 81-176 60-165 (840)
29 PLN00197 beta-amylase; Provisi 97.3 0.00094 2E-08 69.1 8.4 108 79-191 126-272 (573)
30 PLN02801 beta-amylase 97.1 0.0023 5E-08 65.7 9.3 101 77-180 34-173 (517)
31 PLN02905 beta-amylase 97.0 0.0026 5.7E-08 66.6 8.9 102 76-180 282-422 (702)
32 PLN02705 beta-amylase 96.9 0.0032 6.8E-08 65.8 8.4 99 78-179 266-403 (681)
33 PF14587 Glyco_hydr_30_2: O-Gl 96.8 0.0032 6.8E-08 63.2 6.8 79 111-191 95-185 (384)
34 COG3693 XynA Beta-1,4-xylanase 96.6 0.005 1.1E-07 60.0 6.7 86 100-191 66-153 (345)
35 PF02836 Glyco_hydro_2_C: Glyc 96.4 0.022 4.7E-07 55.6 9.7 93 78-189 34-132 (298)
36 PF13204 DUF4038: Protein of u 96.2 0.043 9.2E-07 53.6 10.5 99 86-189 36-156 (289)
37 PF14488 DUF4434: Domain of un 95.6 0.057 1.2E-06 48.4 8.1 102 81-191 21-132 (166)
38 KOG0496 Beta-galactosidase [Ca 94.3 0.09 1.9E-06 55.8 6.4 93 81-175 50-154 (649)
39 PF11790 Glyco_hydro_cc: Glyco 92.6 0.21 4.5E-06 47.4 5.3 27 372-399 150-176 (239)
40 PRK09525 lacZ beta-D-galactosi 92.5 0.38 8.2E-06 55.0 8.1 91 78-190 369-464 (1027)
41 COG3664 XynB Beta-xylosidase [ 92.2 0.28 6E-06 49.5 5.8 101 89-194 14-119 (428)
42 COG3934 Endo-beta-mannanase [C 91.7 0.069 1.5E-06 54.7 0.9 110 81-191 27-150 (587)
43 PRK10340 ebgA cryptic beta-D-g 91.1 0.66 1.4E-05 53.1 8.0 90 79-190 354-451 (1021)
44 PF07488 Glyco_hydro_67M: Glyc 90.3 1.9 4.2E-05 42.0 9.2 87 79-178 56-150 (328)
45 COG3250 LacZ Beta-galactosidas 87.7 2.1 4.6E-05 47.6 8.6 90 76-190 317-408 (808)
46 smart00642 Aamy Alpha-amylase 84.1 2 4.3E-05 38.4 5.2 63 79-141 18-91 (166)
47 PF03198 Glyco_hydro_72: Gluca 80.4 7.8 0.00017 38.2 8.0 90 81-189 54-145 (314)
48 TIGR00612 ispG_gcpE 1-hydroxy- 80.1 12 0.00027 37.1 9.3 89 71-173 73-161 (346)
49 PLN02361 alpha-amylase 78.3 3.4 7.4E-05 42.3 5.1 64 77-140 26-96 (401)
50 PLN00196 alpha-amylase; Provis 75.9 3.7 8.1E-05 42.4 4.6 65 79-143 43-117 (428)
51 PF00128 Alpha-amylase: Alpha 72.6 5.5 0.00012 37.9 4.7 58 83-141 7-73 (316)
52 PRK09441 cytoplasmic alpha-amy 69.9 5.4 0.00012 41.7 4.2 65 77-141 19-102 (479)
53 PRK05402 glycogen branching en 69.6 17 0.00037 40.2 8.2 93 79-177 264-397 (726)
54 TIGR02402 trehalose_TreZ malto 69.6 17 0.00038 38.7 8.0 92 79-177 110-237 (542)
55 PRK14041 oxaloacetate decarbox 69.2 16 0.00036 38.1 7.5 56 78-146 88-148 (467)
56 PF02638 DUF187: Glycosyl hydr 68.2 20 0.00042 35.4 7.6 98 80-177 19-154 (311)
57 cd07945 DRE_TIM_CMS Leptospira 67.6 15 0.00034 35.6 6.6 84 81-175 75-159 (280)
58 PRK14040 oxaloacetate decarbox 67.3 18 0.0004 39.0 7.6 52 78-142 90-146 (593)
59 cd06592 GH31_glucosidase_KIAA1 67.1 23 0.0005 34.7 7.8 106 82-190 32-167 (303)
60 PRK05799 coproporphyrinogen II 66.2 14 0.00031 37.2 6.3 94 82-192 98-195 (374)
61 PRK12313 glycogen branching en 65.4 23 0.0005 38.5 8.1 93 79-177 169-302 (633)
62 cd06593 GH31_xylosidase_YicI Y 64.9 31 0.00067 33.7 8.3 106 82-190 26-161 (308)
63 PF14871 GHL6: Hypothetical gl 64.6 23 0.00051 30.3 6.4 57 85-142 5-66 (132)
64 KOG2233 Alpha-N-acetylglucosam 64.3 20 0.00044 37.3 6.7 112 79-190 77-249 (666)
65 PLN02784 alpha-amylase 64.1 12 0.00025 41.9 5.5 64 77-140 518-588 (894)
66 cd03174 DRE_TIM_metallolyase D 63.7 21 0.00045 33.7 6.6 80 83-174 77-157 (265)
67 PF12876 Cellulase-like: Sugar 62.6 3.9 8.5E-05 32.3 1.1 19 172-190 1-22 (88)
68 cd06543 GH18_PF-ChiA-like PF-C 62.0 34 0.00073 33.5 7.8 84 87-177 19-104 (294)
69 COG0821 gcpE 1-hydroxy-2-methy 61.7 60 0.0013 32.4 9.2 89 72-174 76-164 (361)
70 PRK09505 malS alpha-amylase; R 61.1 12 0.00026 41.1 4.9 63 82-144 232-318 (683)
71 TIGR02403 trehalose_treC alpha 61.0 11 0.00025 40.0 4.7 63 78-141 25-96 (543)
72 cd07939 DRE_TIM_NifV Streptomy 60.6 26 0.00056 33.4 6.6 80 83-177 72-152 (259)
73 PRK05692 hydroxymethylglutaryl 60.3 33 0.00072 33.4 7.4 86 81-175 80-167 (287)
74 cd07944 DRE_TIM_HOA_like 4-hyd 60.0 32 0.0007 33.0 7.2 65 83-174 85-149 (266)
75 TIGR02090 LEU1_arch isopropylm 59.5 26 0.00056 35.3 6.7 79 82-174 73-152 (363)
76 cd07948 DRE_TIM_HCS Saccharomy 58.6 14 0.00031 35.5 4.4 60 82-141 73-133 (262)
77 PLN02746 hydroxymethylglutaryl 58.0 29 0.00063 34.8 6.7 85 82-175 123-209 (347)
78 PRK10785 maltodextrin glucosid 57.7 16 0.00034 39.5 5.1 54 82-141 181-247 (598)
79 PRK12858 tagatose 1,6-diphosph 57.5 41 0.00089 33.7 7.6 52 86-140 112-163 (340)
80 TIGR01515 branching_enzym alph 57.4 46 0.001 36.1 8.6 93 79-177 155-288 (613)
81 TIGR00433 bioB biotin syntheta 56.6 25 0.00055 33.8 5.9 56 82-140 122-178 (296)
82 PRK12331 oxaloacetate decarbox 56.5 41 0.00089 35.0 7.7 56 78-146 89-149 (448)
83 PRK12581 oxaloacetate decarbox 56.4 37 0.00079 35.6 7.3 56 78-146 98-158 (468)
84 PRK09810 entericidin A; Provis 56.2 13 0.00027 25.3 2.5 22 1-22 1-22 (41)
85 PRK03705 glycogen debranching 55.9 22 0.00047 38.9 5.8 55 86-141 185-263 (658)
86 PRK14705 glycogen branching en 55.2 48 0.001 38.9 8.6 93 79-177 764-897 (1224)
87 TIGR02456 treS_nterm trehalose 54.9 15 0.00033 39.0 4.4 62 80-141 28-97 (539)
88 cd07937 DRE_TIM_PC_TC_5S Pyruv 54.4 62 0.0013 31.2 8.2 69 82-175 93-161 (275)
89 cd06601 GH31_lyase_GLase GLase 53.8 58 0.0013 32.4 8.0 98 94-195 40-140 (332)
90 COG1523 PulA Type II secretory 53.7 24 0.00051 38.8 5.6 55 86-140 206-285 (697)
91 TIGR03217 4OH_2_O_val_ald 4-hy 52.8 1.1E+02 0.0023 30.6 9.7 46 83-141 90-135 (333)
92 PRK12399 tagatose 1,6-diphosph 52.4 64 0.0014 32.0 7.8 58 86-146 111-168 (324)
93 cd07938 DRE_TIM_HMGL 3-hydroxy 52.4 52 0.0011 31.8 7.3 84 82-174 75-160 (274)
94 PRK00366 ispG 4-hydroxy-3-meth 51.1 65 0.0014 32.4 7.7 89 72-173 82-170 (360)
95 PRK04161 tagatose 1,6-diphosph 51.1 69 0.0015 31.8 7.8 90 85-183 112-204 (329)
96 cd06602 GH31_MGAM_SI_GAA This 51.1 63 0.0014 32.2 7.8 106 83-191 27-168 (339)
97 TIGR01108 oadA oxaloacetate de 50.9 50 0.0011 35.6 7.4 92 83-191 94-205 (582)
98 PRK10933 trehalose-6-phosphate 50.9 36 0.00079 36.4 6.4 62 78-141 31-102 (551)
99 TIGR03581 EF_0839 conserved hy 49.6 43 0.00093 31.3 5.7 79 75-165 130-230 (236)
100 TIGR03234 OH-pyruv-isom hydrox 48.4 37 0.0008 31.9 5.5 65 79-146 83-150 (254)
101 TIGR02629 L_rham_iso_rhiz L-rh 48.4 88 0.0019 32.1 8.3 88 83-184 73-171 (412)
102 cd07943 DRE_TIM_HOA 4-hydroxy- 48.1 58 0.0013 31.0 6.8 65 83-174 88-152 (263)
103 cd06591 GH31_xylosidase_XylS X 48.1 1E+02 0.0023 30.3 8.8 78 114-192 60-163 (319)
104 cd06599 GH31_glycosidase_Aec37 47.8 1.2E+02 0.0025 29.9 9.1 108 83-191 32-171 (317)
105 PF10566 Glyco_hydro_97: Glyco 47.5 71 0.0015 31.0 7.3 101 75-175 27-149 (273)
106 TIGR01232 lacD tagatose 1,6-di 47.3 67 0.0015 31.9 7.1 59 85-146 111-169 (325)
107 cd06600 GH31_MGAM-like This fa 46.8 1.2E+02 0.0025 30.0 8.9 104 85-191 29-163 (317)
108 PRK09058 coproporphyrinogen II 46.6 55 0.0012 34.0 6.9 105 83-203 163-270 (449)
109 PF03511 Fanconi_A: Fanconi an 46.4 16 0.00035 27.0 2.0 38 104-143 19-56 (64)
110 TIGR01210 conserved hypothetic 46.2 95 0.0021 30.6 8.2 108 83-204 117-229 (313)
111 PF03659 Glyco_hydro_71: Glyco 45.9 72 0.0016 32.5 7.4 51 80-140 17-67 (386)
112 TIGR02635 RhaI_grampos L-rhamn 45.8 1.4E+02 0.0029 30.5 9.3 93 73-183 34-136 (378)
113 cd06598 GH31_transferase_CtsZ 45.8 1.1E+02 0.0023 30.2 8.5 108 83-192 27-168 (317)
114 PRK11858 aksA trans-homoaconit 45.8 55 0.0012 33.2 6.5 78 83-174 78-156 (378)
115 TIGR02660 nifV_homocitr homoci 45.5 51 0.0011 33.2 6.3 80 83-177 75-155 (365)
116 PRK14510 putative bifunctional 44.8 31 0.00068 40.5 5.1 57 84-140 191-267 (1221)
117 COG1501 Alpha-glucosidases, fa 44.8 66 0.0014 35.9 7.4 102 91-195 293-422 (772)
118 cd07941 DRE_TIM_LeuA3 Desulfob 44.4 68 0.0015 30.9 6.7 81 83-174 81-162 (273)
119 KOG1065 Maltase glucoamylase a 44.3 89 0.0019 34.8 8.1 104 85-194 316-454 (805)
120 cd06603 GH31_GANC_GANAB_alpha 44.2 95 0.0021 30.8 7.9 79 115-193 59-167 (339)
121 cd06545 GH18_3CO4_chitinase Th 43.8 53 0.0012 31.0 5.8 74 99-177 26-99 (253)
122 TIGR00539 hemN_rel putative ox 43.6 61 0.0013 32.4 6.5 92 83-190 100-194 (360)
123 cd07940 DRE_TIM_IPMS 2-isoprop 42.6 62 0.0013 30.9 6.1 79 83-177 72-156 (268)
124 PLN02447 1,4-alpha-glucan-bran 42.5 42 0.00091 37.3 5.4 93 79-177 249-383 (758)
125 TIGR02401 trehalose_TreY malto 42.3 45 0.00098 37.4 5.6 65 80-144 16-91 (825)
126 PF05089 NAGLU: Alpha-N-acetyl 41.7 37 0.00081 33.8 4.4 71 118-190 93-185 (333)
127 PRK12568 glycogen branching en 41.6 34 0.00074 37.8 4.5 93 79-177 268-401 (730)
128 PRK14507 putative bifunctional 39.9 85 0.0018 38.1 7.6 66 79-144 757-833 (1693)
129 PRK08195 4-hyroxy-2-oxovalerat 39.6 96 0.0021 30.9 7.1 67 83-177 91-157 (337)
130 PRK10426 alpha-glucosidase; Pr 39.1 1.9E+02 0.0041 31.6 9.7 104 83-189 224-364 (635)
131 PF12891 Glyco_hydro_44: Glyco 38.8 73 0.0016 30.3 5.7 116 120-257 24-181 (239)
132 cd06542 GH18_EndoS-like Endo-b 37.2 89 0.0019 29.4 6.2 55 119-177 50-104 (255)
133 cd07947 DRE_TIM_Re_CS Clostrid 37.0 76 0.0017 30.8 5.7 60 81-140 75-135 (279)
134 PRK14706 glycogen branching en 36.7 1.6E+02 0.0034 32.3 8.6 88 87-177 175-299 (639)
135 PRK12677 xylose isomerase; Pro 35.8 2.4E+02 0.0051 28.7 9.3 91 81-178 32-128 (384)
136 COG3589 Uncharacterized conser 35.6 69 0.0015 32.0 5.1 69 86-168 22-90 (360)
137 TIGR02630 xylose_isom_A xylose 35.6 1.7E+02 0.0037 30.2 8.0 69 85-160 83-156 (434)
138 PRK08599 coproporphyrinogen II 35.1 1.6E+02 0.0035 29.6 8.0 94 82-192 99-196 (377)
139 PLN02389 biotin synthase 34.9 99 0.0021 31.4 6.4 57 81-140 176-233 (379)
140 cd06525 GH25_Lyc-like Lyc mura 34.9 2.8E+02 0.006 24.7 8.8 22 160-181 100-121 (184)
141 TIGR03471 HpnJ hopanoid biosyn 34.6 1.1E+02 0.0025 31.7 7.0 59 83-146 287-348 (472)
142 cd02803 OYE_like_FMN_family Ol 34.3 4.4E+02 0.0096 25.6 11.6 38 106-143 63-100 (327)
143 smart00729 Elp3 Elongator prot 34.2 2.2E+02 0.0047 24.8 8.0 58 80-140 97-157 (216)
144 PRK14511 maltooligosyl trehalo 34.1 71 0.0015 36.1 5.6 57 79-141 19-90 (879)
145 PRK07379 coproporphyrinogen II 33.1 1.6E+02 0.0035 30.0 7.7 104 82-202 114-221 (400)
146 PF01120 Alpha_L_fucos: Alpha- 32.9 1.1E+02 0.0024 30.5 6.3 59 86-144 97-162 (346)
147 COG0366 AmyA Glycosidases [Car 32.9 68 0.0015 33.1 5.0 59 84-142 33-101 (505)
148 PRK05474 xylose isomerase; Pro 32.5 1.9E+02 0.0042 29.9 7.9 69 85-160 84-157 (437)
149 PF02065 Melibiase: Melibiase; 32.5 2.1E+02 0.0046 29.3 8.3 139 82-246 60-227 (394)
150 PF09713 A_thal_3526: Plant pr 32.3 43 0.00094 24.2 2.4 36 123-169 16-52 (54)
151 PRK12330 oxaloacetate decarbox 32.0 1.6E+02 0.0034 31.2 7.5 93 83-191 100-213 (499)
152 TIGR02100 glgX_debranch glycog 31.9 67 0.0014 35.4 4.9 56 86-141 190-266 (688)
153 TIGR01211 ELP3 histone acetylt 31.7 1.4E+02 0.0031 31.7 7.1 106 83-205 206-317 (522)
154 PRK06294 coproporphyrinogen II 31.2 1.3E+02 0.0028 30.3 6.6 93 83-192 103-199 (370)
155 cd02932 OYE_YqiM_FMN Old yello 31.2 5.2E+02 0.011 25.4 15.7 39 105-143 62-100 (336)
156 cd02874 GH18_CFLE_spore_hydrol 30.7 93 0.002 30.3 5.3 84 86-177 16-103 (313)
157 PLN02960 alpha-amylase 30.6 81 0.0018 35.6 5.2 94 78-177 414-549 (897)
158 TIGR01212 radical SAM protein, 30.5 1.1E+02 0.0023 30.0 5.7 73 119-204 162-234 (302)
159 COG3534 AbfA Alpha-L-arabinofu 30.5 3.4E+02 0.0073 28.4 9.2 94 82-190 50-175 (501)
160 PF04914 DltD_C: DltD C-termin 30.4 1.3E+02 0.0027 25.8 5.4 57 119-179 35-91 (130)
161 TIGR01589 A_thal_3526 uncharac 30.3 64 0.0014 23.6 3.0 36 123-169 19-55 (57)
162 PRK09856 fructoselysine 3-epim 30.2 55 0.0012 31.0 3.5 60 79-139 89-148 (275)
163 PF01055 Glyco_hydro_31: Glyco 30.2 1.4E+02 0.0029 30.7 6.7 108 82-192 45-184 (441)
164 cd06595 GH31_xylosidase_XylS-l 30.2 1.4E+02 0.003 29.0 6.3 106 86-192 31-163 (292)
165 PRK08446 coproporphyrinogen II 29.8 2.3E+02 0.005 28.2 8.1 92 83-190 98-192 (350)
166 PLN02925 4-hydroxy-3-methylbut 29.5 1.5E+02 0.0033 32.5 6.9 53 121-174 211-263 (733)
167 PRK09282 pyruvate carboxylase 29.4 1.8E+02 0.004 31.4 7.6 93 82-191 98-210 (592)
168 PF13812 PPR_3: Pentatricopept 28.9 43 0.00094 20.2 1.8 15 122-136 20-34 (34)
169 TIGR00542 hxl6Piso_put hexulos 28.0 75 0.0016 30.3 4.1 60 79-140 93-153 (279)
170 TIGR02104 pulA_typeI pullulana 27.4 1.1E+02 0.0024 33.1 5.6 57 85-141 169-250 (605)
171 PRK13398 3-deoxy-7-phosphohept 27.3 1.7E+02 0.0037 28.1 6.4 73 75-150 36-108 (266)
172 cd06565 GH20_GcnA-like Glycosy 27.2 1.8E+02 0.0039 28.4 6.6 61 82-149 19-86 (301)
173 PRK09936 hypothetical protein; 27.0 5.3E+02 0.011 25.3 9.5 62 81-151 39-101 (296)
174 cd00019 AP2Ec AP endonuclease 27.0 2.6E+02 0.0056 26.5 7.6 54 80-138 10-64 (279)
175 TIGR02631 xylA_Arthro xylose i 26.4 4.9E+02 0.011 26.4 9.8 95 78-179 30-130 (382)
176 PTZ00445 p36-lilke protein; Pr 26.3 1.1E+02 0.0023 28.7 4.5 56 86-141 35-99 (219)
177 PLN03153 hypothetical protein; 25.7 69 0.0015 33.9 3.4 68 129-205 327-401 (537)
178 PF04028 DUF374: Domain of unk 25.4 1.8E+02 0.0039 22.3 4.9 40 87-140 27-66 (74)
179 TIGR02159 PA_CoA_Oxy4 phenylac 25.4 75 0.0016 27.8 3.2 55 74-137 36-91 (146)
180 PRK08208 coproporphyrinogen II 24.9 2.4E+02 0.0052 29.0 7.4 91 82-190 140-235 (430)
181 PF11997 DUF3492: Domain of un 24.8 49 0.0011 31.9 2.1 24 373-399 184-207 (268)
182 PRK08255 salicylyl-CoA 5-hydro 24.8 9.9E+02 0.022 26.6 14.7 151 104-277 459-647 (765)
183 PF15240 Pro-rich: Proline-ric 24.6 62 0.0013 29.3 2.5 28 2-30 1-28 (179)
184 cd00950 DHDPS Dihydrodipicolin 24.6 2.8E+02 0.0061 26.5 7.4 59 111-183 15-73 (284)
185 TIGR00538 hemN oxygen-independ 24.4 69 0.0015 33.2 3.2 74 83-174 151-229 (455)
186 cd06589 GH31 The enzymes of gl 24.2 2.3E+02 0.005 26.9 6.6 90 83-192 27-120 (265)
187 cd02742 GH20_hexosaminidase Be 24.1 1.6E+02 0.0035 28.7 5.6 62 82-149 18-98 (303)
188 PF04646 DUF604: Protein of un 23.9 30 0.00066 33.0 0.4 73 128-203 76-148 (255)
189 KOG0470 1,4-alpha-glucan branc 23.8 86 0.0019 34.5 3.8 64 79-142 253-333 (757)
190 cd06604 GH31_glucosidase_II_Ma 23.8 3.6E+02 0.0077 26.7 8.1 69 122-192 66-163 (339)
191 PF00682 HMGL-like: HMGL-like 23.7 1.7E+02 0.0038 27.0 5.6 79 83-175 66-149 (237)
192 COG2100 Predicted Fe-S oxidore 23.6 2.4E+02 0.0051 28.3 6.4 82 76-173 197-284 (414)
193 PRK11572 copper homeostasis pr 23.5 1.5E+02 0.0032 28.4 5.0 42 79-129 72-113 (248)
194 PF04055 Radical_SAM: Radical 23.5 96 0.0021 25.9 3.5 54 83-138 90-145 (166)
195 PF11153 DUF2931: Protein of u 23.5 81 0.0018 29.1 3.2 11 32-42 26-36 (216)
196 cd01335 Radical_SAM Radical SA 23.4 1.1E+02 0.0023 26.4 3.9 59 82-141 87-146 (204)
197 cd06568 GH20_SpHex_like A subg 23.3 2E+02 0.0043 28.6 6.2 62 82-149 20-101 (329)
198 PRK09997 hydroxypyruvate isome 23.3 2E+02 0.0043 27.0 5.9 62 82-146 87-151 (258)
199 PRK13210 putative L-xylulose 5 23.2 2.2E+02 0.0048 26.9 6.3 57 107-177 226-282 (284)
200 PHA02152 hypothetical protein 23.1 43 0.00094 26.1 1.1 36 45-92 42-78 (96)
201 PRK07094 biotin synthase; Prov 22.7 1.4E+02 0.0031 29.1 5.0 57 81-140 127-185 (323)
202 TIGR00674 dapA dihydrodipicoli 22.7 3.6E+02 0.0078 25.9 7.7 61 111-185 13-73 (285)
203 PF03932 CutC: CutC family; I 22.7 1.2E+02 0.0027 27.9 4.2 50 79-142 71-120 (201)
204 PRK09389 (R)-citramalate synth 22.6 2.4E+02 0.0051 29.8 6.8 61 82-142 75-136 (488)
205 smart00052 EAL Putative diguan 22.6 1.5E+02 0.0033 26.8 4.9 62 73-139 148-209 (241)
206 PF06777 DUF1227: Protein of u 22.2 1.6E+02 0.0035 25.8 4.6 68 120-188 16-85 (146)
207 PRK10081 entericidin B membran 22.1 99 0.0021 21.8 2.6 22 1-22 1-25 (48)
208 PRK05628 coproporphyrinogen II 22.1 4.4E+02 0.0095 26.4 8.5 94 82-192 107-204 (375)
209 PRK06256 biotin synthase; Vali 21.6 1.3E+02 0.0028 29.6 4.5 57 81-140 150-207 (336)
210 PF14417 MEDS: MEDS: MEthanoge 21.5 2.3E+02 0.0049 25.5 5.7 58 79-145 104-163 (191)
211 cd01948 EAL EAL domain. This d 21.4 1.4E+02 0.0031 27.0 4.5 64 72-140 146-209 (240)
212 PF01261 AP_endonuc_2: Xylose 21.4 71 0.0015 28.3 2.4 61 79-139 70-131 (213)
213 COG5520 O-Glycosyl hydrolase [ 21.3 2.3E+02 0.005 28.7 5.9 94 91-192 77-181 (433)
214 PF02057 Glyco_hydro_59: Glyco 20.9 1.8E+02 0.004 31.8 5.6 64 124-190 116-184 (669)
215 TIGR01531 glyc_debranch glycog 20.9 2.5E+02 0.0055 33.6 7.0 69 77-150 129-218 (1464)
216 PRK01060 endonuclease IV; Prov 20.8 4.6E+02 0.01 24.7 8.0 52 81-137 13-64 (281)
217 COG3916 LasI N-acyl-L-homoseri 20.8 1.3E+02 0.0028 27.9 3.9 76 80-157 77-159 (209)
218 cd07938 DRE_TIM_HMGL 3-hydroxy 20.6 6.6E+02 0.014 24.1 9.0 79 81-178 115-193 (274)
219 PRK05692 hydroxymethylglutaryl 20.5 6.1E+02 0.013 24.6 8.8 81 79-178 119-199 (287)
220 cd06413 GH25_muramidase_1 Unch 20.4 4.1E+02 0.009 23.8 7.2 19 162-180 109-127 (191)
221 PRK13210 putative L-xylulose 5 20.4 1.2E+02 0.0026 28.7 3.8 59 80-140 94-153 (284)
222 PRK13859 type IV secretion sys 20.2 1.3E+02 0.0028 21.5 2.8 38 8-46 5-46 (55)
223 PF11790 Glyco_hydro_cc: Glyco 20.1 3.8E+02 0.0082 25.1 7.1 53 116-185 119-171 (239)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-114 Score=865.60 Aligned_cols=379 Identities=55% Similarity=0.990 Sum_probs=342.7
Q ss_pred cccccCCCCCCCeeeeecchhhccCCcCCCCCCCccceeeccc-C-CC--CCCCCcCCCcccCcHHHHHHHHHcCCCcee
Q 015605 23 VEYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-G-NV--HGTGDIACDGYHKYKEDVKLMADTGLDAYR 98 (403)
Q Consensus 23 ~~~~~~~fp~~FlwG~Atsa~QvEG~~~~~gkg~s~wd~~~~~-~-~~--~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R 98 (403)
..+++..||++|+||+||||||+|||+++||||+|+||.|+|. + ++ ..++|+|||+||+|+|||+|||+||+++||
T Consensus 30 ~~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afR 109 (524)
T KOG0626|consen 30 TKFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFR 109 (524)
T ss_pred CcccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEE
Confidence 4456788999999999999999999999999999999999986 3 43 567999999999999999999999999999
Q ss_pred ecccCcccccCCC--CCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHh
Q 015605 99 FSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQF 176 (403)
Q Consensus 99 ~si~W~ri~P~g~--g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~ 176 (403)
|||+||||+|.|+ +.+|++|+++|+++|++|+++||+|+|||+|||+|++|+++||||+|++++++|.+||+.||++|
T Consensus 110 FSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~f 189 (524)
T KOG0626|consen 110 FSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEF 189 (524)
T ss_pred EEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHh
Confidence 9999999999997 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeccCccccccccccCCCCCCCCCCc-cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Q 015605 177 GDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSSI-NHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVN 255 (403)
Q Consensus 177 ~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~-~~~~~~~~~~~~~~~~hn~llAHa~A~~~~r~~~~~~~~g~VG~~ 255 (403)
||+||+|+|+|||++++..||..|..|||+|+.. .+|..++|.++.|.|.|||++|||+||++||++++..|+|+|||+
T Consensus 190 GDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~ 269 (524)
T KOG0626|consen 190 GDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIA 269 (524)
T ss_pred cccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEE
Confidence 9999999999999999999999999999999864 679999999999999999999999999999999988899999999
Q ss_pred ecCCccccCCCCHHHHHHHHHHHHHhhccccCccccCCccHHHHHHhhccCCCCCHHHHhhhcCCCcEEEEecccCeeee
Q 015605 256 IFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVK 335 (403)
Q Consensus 256 ~~~~~~~P~~~~~~D~~aa~r~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ik~~~DFlGiNYYts~~v~ 335 (403)
++..|+.|.+++++|.+||+|+.+|..+|+++|++.|+||+.|++.+++|||.||++|.+.+||+.||+|||||++.+|+
T Consensus 270 ~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~ 349 (524)
T KOG0626|consen 270 LSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVK 349 (524)
T ss_pred EeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhh
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999998
Q ss_pred cCCCCCccccCCCccCccccc----ccCCCCC-CCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCCC
Q 015605 336 DNPSSLNKKLRDWNADSATEI----FFNLDTA-SSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLSL 401 (403)
Q Consensus 336 ~~~~~~~~~~~~~~~d~~~~~----~~~~~~~-t~~gw~I~P~GL~~~L~~v~~rY~~~PI~ITENG~~~~ 401 (403)
+..............|..+.. ....+.. ...+..++|+|||++|++++++|+|+||||||||+++.
T Consensus 350 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~ 420 (524)
T KOG0626|consen 350 HLKPPPDPSQPGWSTDSGVDWTLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDL 420 (524)
T ss_pred ccCCCCCCCCcccccccceeeeecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcc
Confidence 754322111111222222211 0111122 24477899999999999999999999999999999874
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=6.4e-109 Score=849.91 Aligned_cols=395 Identities=64% Similarity=1.138 Sum_probs=343.0
Q ss_pred HHHHHHHHHHHhhhhcccccccCCCCCCCeeeeecchhhccCCcCCCCCCCccceeecccCCCC-CCCCcCCCcccCcHH
Q 015605 6 SFLLMYLLNLATSALTAVEYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVH-GTGDIACDGYHKYKE 84 (403)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~Atsa~QvEG~~~~~gkg~s~wd~~~~~~~~~-~~~~~a~d~y~~~~e 84 (403)
++..+-||+||.+.+++..+.+.+||++|+||+|||||||||++++||||+|+||.|++.+..+ .++++||||||||+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~a~D~Yhry~E 86 (497)
T PLN02998 7 SLMFLPLLALALTAVSSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAHAGHSGVAAGNVACDQYHKYKE 86 (497)
T ss_pred chhHHHHHHhcccccccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccccCcCCCCCCcccccHHHhhHH
Confidence 3444457888998888888889999999999999999999999999999999999998754222 478899999999999
Q ss_pred HHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHH
Q 015605 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKD 164 (403)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~ 164 (403)
||++||+||+++|||||+||||+|+|.|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++
T Consensus 87 Di~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~ 166 (497)
T PLN02998 87 DVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRD 166 (497)
T ss_pred HHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999998999999999999
Q ss_pred HHHHHHHHHHHhCCCcceEEEeccCccccccccccCCCCCCCCCCc--cccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 015605 165 FTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSSI--NHCSRGNSSTEPYITVHHVLLAHASVARLYRK 242 (403)
Q Consensus 165 f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~--~~~~~~~~~~~~~~~~hn~llAHa~A~~~~r~ 242 (403)
|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+... ..|..+++.+..++++||+++|||+||+++|+
T Consensus 167 F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~ 246 (497)
T PLN02998 167 FTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQ 246 (497)
T ss_pred HHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999964311 12655555567899999999999999999999
Q ss_pred HhcCCCCCcEEEEecCCccccCCCCHHHHHHHHHHHHHhhccccCccccCCccHHHHHHhhccCCCCCHHHHhhhcCCCc
Q 015605 243 KYQDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSAD 322 (403)
Q Consensus 243 ~~~~~~~g~VG~~~~~~~~~P~~~~~~D~~aa~r~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ik~~~D 322 (403)
.++..++++||++++..+++|.+++++|++||++.+++.++||+||++.|+||+.|++.+++++|.|+++|+++|++++|
T Consensus 247 ~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~D 326 (497)
T PLN02998 247 QYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFD 326 (497)
T ss_pred hhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCC
Confidence 86555678999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred EEEEecccCeeeecCCCCCccccCCCccCcccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCC
Q 015605 323 FLGVINYYIVYVKDNPSSLNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLS 400 (403)
Q Consensus 323 FlGiNYYts~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~v~~rY~~~PI~ITENG~~~ 400 (403)
|+|||||++.+|+...............+........+....++||+|+|+|||.+|+++++||+++||||||||+++
T Consensus 327 FlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~ 404 (497)
T PLN02998 327 FVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIENEYANTPWSLQQILLYVKETYGNPPVYILENGQMT 404 (497)
T ss_pred EEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCCCCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCcc
Confidence 999999999999753211000000010010000000111122479999999999999999999986789999999986
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=1.2e-107 Score=841.45 Aligned_cols=392 Identities=60% Similarity=1.055 Sum_probs=336.7
Q ss_pred hHHHHH-HHHHHHHHhhhhcccccccCCCCCCCeeeeecchhhccCCcCCCCCCCccceeecccCCCCCCCCcCCCcccC
Q 015605 3 LRLSFL-LMYLLNLATSALTAVEYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHK 81 (403)
Q Consensus 3 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~Atsa~QvEG~~~~~gkg~s~wd~~~~~~~~~~~~~~a~d~y~~ 81 (403)
|-|||+ ++.||++..+ +-+..+.+.+||++|+||+|||||||||++++||||+|+||.|++... +.++++|||||||
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~-~~~~~~a~D~Yhr 80 (503)
T PLN02849 3 LILSLFTIFLLLALSSG-KCSSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN-MSNGDIACDGYHK 80 (503)
T ss_pred hHHHHHHHHHHHhcccc-cccCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC-CCCCCccccHHHh
Confidence 334433 3444444332 223557778899999999999999999999999999999999987432 3578899999999
Q ss_pred cHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchh
Q 015605 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~ 161 (403)
|+|||+|||+||+++|||||+||||+|+|.|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|+++
T Consensus 81 Y~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~ 160 (503)
T PLN02849 81 YKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRI 160 (503)
T ss_pred HHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcceEEEeccCccccccccccCCCCCCCCCC-ccccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 015605 162 VKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSS-INHCSRGNSSTEPYITVHHVLLAHASVARLY 240 (403)
Q Consensus 162 ~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~-~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~ 240 (403)
+++|++||+.|+++|||+|++|+|||||++++..||+.|.+|||.+.. ...|+.+++.++.++++||+++|||+||+++
T Consensus 161 v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~ 240 (503)
T PLN02849 161 IKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLY 240 (503)
T ss_pred HHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996432 1235544455678999999999999999999
Q ss_pred HHHhcCCCCCcEEEEecCCccccCCCCHHHHHHHHHHHHHhhccccCccccCCccHHHHHHhhccCCCCCHHHHhhhcCC
Q 015605 241 RKKYQDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGS 320 (403)
Q Consensus 241 r~~~~~~~~g~VG~~~~~~~~~P~~~~~~D~~aa~r~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ik~~ 320 (403)
|++++..++++||++++..++||.+++++|+.||++.+++.++||+||+++|+||+.|++.+++++|.++++|+++|+++
T Consensus 241 ~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~ 320 (503)
T PLN02849 241 KQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGS 320 (503)
T ss_pred HHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCC
Confidence 99754346789999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CcEEEEecccCeeeecCCCCCc-cccCCCccCcccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCC
Q 015605 321 ADFLGVINYYIVYVKDNPSSLN-KKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSL 399 (403)
Q Consensus 321 ~DFlGiNYYts~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~v~~rY~~~PI~ITENG~~ 399 (403)
+||||||||++.+|+....... .......... .......+++||+|+|+|||++|+++++||+++||||||||++
T Consensus 321 ~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~ 396 (503)
T PLN02849 321 SDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDM----GVSLGKFSAFEYAVAPWAMESVLEYIKQSYGNPPVYILENGTP 396 (503)
T ss_pred CCEEEEeccchhhcccCCCCCCCCCCCcccccc----CCCCCccCCCCCeEChHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 9999999999999975321100 0000111000 0011235679999999999999999999998678999999998
Q ss_pred C
Q 015605 400 S 400 (403)
Q Consensus 400 ~ 400 (403)
.
T Consensus 397 ~ 397 (503)
T PLN02849 397 M 397 (503)
T ss_pred c
Confidence 5
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=3e-107 Score=838.79 Aligned_cols=374 Identities=60% Similarity=1.031 Sum_probs=327.0
Q ss_pred ccccCCCCCCCeeeeecchhhccCCcCCCCCCCccceeecccCCCCCCCCcCCCcccCcHHHHHHHHHcCCCceeecccC
Q 015605 24 EYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISW 103 (403)
Q Consensus 24 ~~~~~~fp~~FlwG~Atsa~QvEG~~~~~gkg~s~wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W 103 (403)
.+.+.+||++|+||+|||||||||++++||||+|+||.+++... +.++++||||||||+|||+|||+||+++|||||+|
T Consensus 22 ~~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~~~-~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsW 100 (504)
T PLN02814 22 AFTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHCYN-GGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISW 100 (504)
T ss_pred ccccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeeccC-CCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccH
Confidence 36677899999999999999999999999999999999986311 35789999999999999999999999999999999
Q ss_pred cccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCcceE
Q 015605 104 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYW 183 (403)
Q Consensus 104 ~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w 183 (403)
|||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.|+++|||+|++|
T Consensus 101 sRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~W 180 (504)
T PLN02814 101 SRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLW 180 (504)
T ss_pred hhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCccccccccccCCCCCCCCCCc--cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCCcc
Q 015605 184 TTVNEPNAFANLGYDYGIAPPQRCSSI--NHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGL 261 (403)
Q Consensus 184 ~t~NEp~~~~~~gy~~g~~~Pg~~~~~--~~~~~~~~~~~~~~~~hn~llAHa~A~~~~r~~~~~~~~g~VG~~~~~~~~ 261 (403)
+|||||++++..||..|.. ||.+... ..|..+++.++.++++||+++|||+||+++|++++..++++||++++..++
T Consensus 181 iT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~ 259 (504)
T PLN02814 181 TTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGL 259 (504)
T ss_pred EeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCcee
Confidence 9999999999999999885 8764421 235434455678999999999999999999998665678999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhhccccCccccCCccHHHHHHhhccCCCCCHHHHhhhcCCCcEEEEecccCeeeecCCCCC
Q 015605 262 LPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVKDNPSSL 341 (403)
Q Consensus 262 ~P~~~~~~D~~aa~r~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ik~~~DFlGiNYYts~~v~~~~~~~ 341 (403)
+|.+++|+|+.||++++++.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+..+...
T Consensus 260 ~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~ 339 (504)
T PLN02814 260 SPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPS 339 (504)
T ss_pred ecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997532110
Q ss_pred c-cc-cCCCccCcccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCC
Q 015605 342 N-KK-LRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLS 400 (403)
Q Consensus 342 ~-~~-~~~~~~d~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~v~~rY~~~PI~ITENG~~~ 400 (403)
. .. ......+.+.. .......+++||+|||+|||.+|+++++||+++||||||||++.
T Consensus 340 ~~~~~~~~~~~~~~~~-~~~~~~~~~~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~ 399 (504)
T PLN02814 340 IFPSMNEGFFTDMGAY-IISAGNSSFFEFDATPWGLEGILEHIKQSYNNPPIYILENGMPM 399 (504)
T ss_pred cccccCCCcccccccc-cCCCCCcCCCCCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 0 00 00111111100 01112467899999999999999999999987799999999984
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-104 Score=788.88 Aligned_cols=355 Identities=39% Similarity=0.682 Sum_probs=316.3
Q ss_pred CCCCCCCeeeeecchhhccCCcCCCCCCCccceeeccc---CCC--CCCCCcCCCcccCcHHHHHHHHHcCCCceeeccc
Q 015605 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA---GNV--HGTGDIACDGYHKYKEDVKLMADTGLDAYRFSIS 102 (403)
Q Consensus 28 ~~fp~~FlwG~Atsa~QvEG~~~~~gkg~s~wd~~~~~---~~~--~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~ 102 (403)
.+||++|+||+||||+|+|||+++||||+|+||+|++. ++. +..+++||||||||+|||+|||+||+++||+||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 47999999999999999999999999999999999983 333 5788999999999999999999999999999999
Q ss_pred CcccccCCCC-CCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCcc
Q 015605 103 WSRLIPNGRG-PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVS 181 (403)
Q Consensus 103 W~ri~P~g~g-~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~ 181 (403)
||||+|+|.+ ++|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|++++++|++||++||++|||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999876 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCCcc
Q 015605 182 YWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGL 261 (403)
Q Consensus 182 ~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~r~~~~~~~~g~VG~~~~~~~~ 261 (403)
+|+||||||+++..||+.|.+||+..+. +.++||+||+++|||+|++++|+..+. .+|||+++..+.
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~~----------~~~~qa~hh~~lA~A~avk~~~~~~~~---~kIG~~~~~~p~ 228 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVDP----------KAAYQVAHHMLLAHALAVKAIKKINPK---GKVGIILNLTPA 228 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccCH----------HHHHHHHHHHHHHHHHHHHHHHhhCCc---CceEEEeccCcC
Confidence 9999999999999999999999997642 578999999999999999999998653 289999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhhccccCccccCCccHHHHHHhhcc--CCCCCHHHHhhhcC-CCcEEEEecccC-eeeecC
Q 015605 262 LPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVKG-SADFLGVINYYI-VYVKDN 337 (403)
Q Consensus 262 ~P~~~~~~D~~aa~r~~~~~~~~~ldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~ik~-~~DFlGiNYYts-~~v~~~ 337 (403)
||.+++|+|+.||+.++.+.+.+|+||+++|+||..+.+.+++. +|.++++|+++||. ++||||+|||++ .+++..
T Consensus 229 YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~ 308 (460)
T COG2723 229 YPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAE 308 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeecc
Confidence 99999999999999999999999999999999999999999875 79999999999985 699999999995 444443
Q ss_pred CCC-CccccCCCccCcccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCC
Q 015605 338 PSS-LNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLS 400 (403)
Q Consensus 338 ~~~-~~~~~~~~~~d~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~v~~rY~~~PI~ITENG~~~ 400 (403)
+.. .......... ....+.-+.|+|||+|||+|||.+|+++++||+ +||||||||+|.
T Consensus 309 ~~~~~~~~~~~~~~----~~~~p~~~~sdwGWeI~P~GL~~~l~~~~~rY~-~p~fItENG~G~ 367 (460)
T COG2723 309 PRYVSGYGPGGFFT----SVPNPGLEVSDWGWEIYPKGLYDILEKLYERYG-IPLFITENGLGV 367 (460)
T ss_pred CCcCCccccccccc----ccCCCCCcccCCCceeChHHHHHHHHHHHHHhC-CCeEEecCCCCc
Confidence 211 0000000110 001112246799999999999999999999997 999999999986
No 6
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=1.6e-101 Score=792.49 Aligned_cols=358 Identities=30% Similarity=0.512 Sum_probs=310.0
Q ss_pred CCCCCCCeeeeecchhhccCCcCCCCCCCccceeecccCCCCCCCCcCCCcccCcHHHHHHHHHcCCCceeecccCcccc
Q 015605 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLI 107 (403)
Q Consensus 28 ~~fp~~FlwG~Atsa~QvEG~~~~~gkg~s~wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~ 107 (403)
.+||++|+||+|||||||||+++++|||+|+||.+++... ..++++||||||||+|||+|||+||+++|||||+||||+
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~-~~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~ 80 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNY-WYTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIF 80 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCC-CCCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhcc
Confidence 3599999999999999999999999999999999886311 237789999999999999999999999999999999999
Q ss_pred cCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCcceEEEec
Q 015605 108 PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVN 187 (403)
Q Consensus 108 P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~N 187 (403)
|+|.|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||+|++++++|++||+.|+++||+ |++|+|||
T Consensus 81 P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~N 158 (467)
T TIGR01233 81 PTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFN 158 (467)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEec
Confidence 999899999999999999999999999999999999999999976 9999999999999999999999998 99999999
Q ss_pred cCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCCccccCC-C
Q 015605 188 EPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLT-N 266 (403)
Q Consensus 188 Ep~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~r~~~~~~~~g~VG~~~~~~~~~P~~-~ 266 (403)
|||+++..||+.|.+|||.+.. .+..++++||+++|||+||+++|++. ++++||++++..++||.+ +
T Consensus 159 EP~~~~~~gy~~G~~~Pg~~~~---------~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~ 226 (467)
T TIGR01233 159 EIGPIGDGQYLVGKFPPGIKYD---------LAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPYDPE 226 (467)
T ss_pred chhhhhhccchhcccCCCccch---------hHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEECCCC
Confidence 9999999999999999995321 13578999999999999999999974 468999999999999998 8
Q ss_pred CHHHHHHHHHHHHHhhccccCccccCCccHHHHHHhhc----c--CCCCCHHHHhhh---cCCCcEEEEecccCeeeecC
Q 015605 267 STEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGS----R--LPAFSDRESKQV---KGSADFLGVINYYIVYVKDN 337 (403)
Q Consensus 267 ~~~D~~aa~r~~~~~~~~~ldp~~~G~YP~~~~~~l~~----~--lp~~t~~d~~~i---k~~~DFlGiNYYts~~v~~~ 337 (403)
+++|++||++.+++.++||+||+++|+||+.|++.++. + +|.++++|+++| ++++||||||||+|.+|+..
T Consensus 227 ~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~ 306 (467)
T TIGR01233 227 NPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAF 306 (467)
T ss_pred CHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccC
Confidence 99999999999999999999999999999999997753 2 377999999999 48899999999999999753
Q ss_pred CCCCc----cc---cCCCccCcccc-cccC-CCCCCCCCCCcChHHHHHHHHHHHHHcCC-CCEEEecCCCCC
Q 015605 338 PSSLN----KK---LRDWNADSATE-IFFN-LDTASSNEFPIQPLGLQRVLEHFKQLYGN-PPMYIHENGSLS 400 (403)
Q Consensus 338 ~~~~~----~~---~~~~~~d~~~~-~~~~-~~~~t~~gw~I~P~GL~~~L~~v~~rY~~-~PI~ITENG~~~ 400 (403)
..... .. ........+.. ...+ +.+.++|||+|+|+|||.+|+++++||++ +||||||||+|+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~ 379 (467)
T TIGR01233 307 DGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGY 379 (467)
T ss_pred CCccccccCCccccCcccccCCCcccccCCCCCCcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCC
Confidence 11100 00 00000000000 0011 22467899999999999999999999975 579999999985
No 7
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=1.7e-101 Score=793.79 Aligned_cols=357 Identities=32% Similarity=0.539 Sum_probs=310.1
Q ss_pred CCCCCCCeeeeecchhhccCCcCCCCCCCccceeeccc-CCCCCCCCcCCCcccCcHHHHHHHHHcCCCceeecccCccc
Q 015605 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRL 106 (403)
Q Consensus 28 ~~fp~~FlwG~Atsa~QvEG~~~~~gkg~s~wd~~~~~-~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri 106 (403)
.+||++|+||+|||||||||++++||||+|+||.|++. ++ .++++||||||||+|||+|||+||+++|||||+||||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~--~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI 80 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYW--FTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRI 80 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCC--CCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhc
Confidence 45999999999999999999999999999999999864 33 3789999999999999999999999999999999999
Q ss_pred ccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCcceEEEe
Q 015605 107 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTV 186 (403)
Q Consensus 107 ~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~ 186 (403)
+|+|+|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||+.|+++||| |++|+||
T Consensus 81 ~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~ 158 (469)
T PRK13511 81 FPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTF 158 (469)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEc
Confidence 9999899999999999999999999999999999999999999976 9999999999999999999999999 9999999
Q ss_pred ccCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCCccccCC-
Q 015605 187 NEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLT- 265 (403)
Q Consensus 187 NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~r~~~~~~~~g~VG~~~~~~~~~P~~- 265 (403)
|||++++..||..|.+|||++.. .++.++++||+++|||+||+++|+.. ++++||++++..+++|.+
T Consensus 159 NEP~~~~~~gy~~G~~~Pg~~~~---------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~ 226 (469)
T PRK13511 159 NEIGPIGDGQYLVGKFPPGIKYD---------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDP 226 (469)
T ss_pred cchhhhhhcchhhcccCCCCCcc---------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCC
Confidence 99999999999999999996421 13579999999999999999999974 578999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccccCccccCCccHHHHHHhhc------cCCCCCHHHHhhhcC---CCcEEEEecccCeeeec
Q 015605 266 NSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGS------RLPAFSDRESKQVKG---SADFLGVINYYIVYVKD 336 (403)
Q Consensus 266 ~~~~D~~aa~r~~~~~~~~~ldp~~~G~YP~~~~~~l~~------~lp~~t~~d~~~ik~---~~DFlGiNYYts~~v~~ 336 (403)
++++|+.||++.+++.++||+||++.|+||+.|++.++. ..+.|+++|++++++ ++||||||||+|.+|+.
T Consensus 227 ~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~ 306 (469)
T PRK13511 227 DNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRA 306 (469)
T ss_pred CCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeec
Confidence 899999999999999999999999999999999987742 124799999999974 58999999999999975
Q ss_pred CCCCCcc--ccCC-Ccc----Ccccc--cccCCCCCCCCCCCcChHHHHHHHHHHHHHcCC-CCEEEecCCCCC
Q 015605 337 NPSSLNK--KLRD-WNA----DSATE--IFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGN-PPMYIHENGSLS 400 (403)
Q Consensus 337 ~~~~~~~--~~~~-~~~----d~~~~--~~~~~~~~t~~gw~I~P~GL~~~L~~v~~rY~~-~PI~ITENG~~~ 400 (403)
.+..... .... ... ..+.. ....+.+.+++||+|+|+||+.+|++++++|++ +||||||||+|.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~ 380 (469)
T PRK13511 307 YDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITENGLGY 380 (469)
T ss_pred CCCccccccCCCCccccccccccCccccccCCCCCcCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEecCCcCC
Confidence 3211000 0000 000 00000 001122467899999999999999999999986 689999999983
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=2.2e-101 Score=792.80 Aligned_cols=355 Identities=31% Similarity=0.480 Sum_probs=306.6
Q ss_pred cCCCCCCCeeeeecchhhccCCcCCCCCCCccceeeccc-CCC--------------C--CCCCcCCCcccCcHHHHHHH
Q 015605 27 KNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--------------H--GTGDIACDGYHKYKEDVKLM 89 (403)
Q Consensus 27 ~~~fp~~FlwG~Atsa~QvEG~~~~~gkg~s~wd~~~~~-~~~--------------~--~~~~~a~d~y~~~~eDi~l~ 89 (403)
..+||++|+||+|||||||||++++||||+|+||.|++. +++ + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 456999999999999999999999999999999998873 221 0 15788999999999999999
Q ss_pred HHcCCCceeecccCcccccCCC-CCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHH
Q 015605 90 ADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAY 168 (403)
Q Consensus 90 ~~lG~~~~R~si~W~ri~P~g~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y 168 (403)
|+||+++|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 9999999999999999999984 569999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcceEEEeccCccccccccc-cCC-CCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcC
Q 015605 169 ADVCFRQFGDRVSYWTTVNEPNAFANLGYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQD 246 (403)
Q Consensus 169 a~~~~~~~~~~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~r~~~~~ 246 (403)
|+.|+++|||+|++|+||||||+++..||. .|. +|||.. +..+.++++||+++|||+||+++|+..
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~----------~~~~~~~a~h~~llAHa~A~~~~~~~~-- 230 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN----------KEQVKYQAAHHELVASAIATKIAHEVD-- 230 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc----------hhhhHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999999999999999999999999988876 443 366632 124579999999999999999999863
Q ss_pred CCCCcEEEEecCCccccCCCCHHHHHHHHHHHHHhhccccCccccCCccHHHHHHhhc--cCCCCCHHHHhhhc-CCCcE
Q 015605 247 KQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGS--RLPAFSDRESKQVK-GSADF 323 (403)
Q Consensus 247 ~~~g~VG~~~~~~~~~P~~~~~~D~~aa~r~~~~~~~~~ldp~~~G~YP~~~~~~l~~--~lp~~t~~d~~~ik-~~~DF 323 (403)
|+++||++++..+++|.+++++|++||++.+ +.+.||+||+++|+||+.|++.+++ .+|.|+++|+++|+ +++||
T Consensus 231 -~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DF 308 (478)
T PRK09593 231 -PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDF 308 (478)
T ss_pred -CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 4789999999999999999999999999987 5688999999999999999999976 36889999999996 89999
Q ss_pred EEEecccCeeeecCCCCCccccCCCccCcccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCC
Q 015605 324 LGVINYYIVYVKDNPSSLNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLS 400 (403)
Q Consensus 324 lGiNYYts~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~v~~rY~~~PI~ITENG~~~ 400 (403)
||||||+|.+|+..+........... .....+....+++||+|+|+|||.+|+++++||+ .||||||||++.
T Consensus 309 lGiNyYt~~~v~~~~~~~~~~~~~~~----~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~-~Pi~ItENG~~~ 380 (478)
T PRK09593 309 ISFSYYSSRVASGDPKVNEKTAGNIF----ASLKNPYLKASEWGWQIDPLGLRITLNTIWDRYQ-KPMFIVENGLGA 380 (478)
T ss_pred EEEecccCcccccCCCCCCCCCCCcc----ccccCCCcccCCCCCEECHHHHHHHHHHHHHHcC-CCEEEEcCCCCC
Confidence 99999999999753210000000000 0001111246789999999999999999999997 699999999984
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=3.8e-102 Score=798.60 Aligned_cols=360 Identities=49% Similarity=0.881 Sum_probs=309.2
Q ss_pred cCCCCCCCeeeeecchhhccCCcCCCCCCCccceeeccc-CCC--CCCCCcCCCcccCcHHHHHHHHHcCCCceeecccC
Q 015605 27 KNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--HGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISW 103 (403)
Q Consensus 27 ~~~fp~~FlwG~Atsa~QvEG~~~~~gkg~s~wd~~~~~-~~~--~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W 103 (403)
+.+||++|+||+|||||||||++++||||+|+||.|++. +++ +.++++||||||||+|||++||+||+++|||||+|
T Consensus 2 ~~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 2 SKKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp GGGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--H
T ss_pred CCCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecch
Confidence 357999999999999999999999999999999999987 444 56789999999999999999999999999999999
Q ss_pred cccccCC-CCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCcce
Q 015605 104 SRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSY 182 (403)
Q Consensus 104 ~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~ 182 (403)
+||+|+| .|.+|++++++|+++|++|+++||+|+|||+|||+|+||++ +|||+|+++++.|++||++|+++|||+|++
T Consensus 82 ~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 82 SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred hheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 9999998 89999999999999999999999999999999999999997 799999999999999999999999999999
Q ss_pred EEEeccCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCCccc
Q 015605 183 WTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLL 262 (403)
Q Consensus 183 w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~r~~~~~~~~g~VG~~~~~~~~~ 262 (403)
|+|||||++++..||+.|.+|||..+ ....++++||+++|||+|++++|+++ ++++||++++..+++
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~~----------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~ 227 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRDS----------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFY 227 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSST----------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEE
T ss_pred EEeccccceeeccccccccccccccc----------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccC
Confidence 99999999999999999999999543 35789999999999999999999986 478999999999999
Q ss_pred cCCCCHHHH-HHHHHHHHHhhccccCccccCCccHHHHHHhhcc--CCCCCHHHHhhhcCCCcEEEEecccCeeeecCCC
Q 015605 263 PLTNSTEDA-IATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVKGSADFLGVINYYIVYVKDNPS 339 (403)
Q Consensus 263 P~~~~~~D~-~aa~r~~~~~~~~~ldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~ik~~~DFlGiNYYts~~v~~~~~ 339 (403)
|.+++++|. .||++.+++.++||+||++.|+||..|++.++++ +|.||++|++.|++++||+|||||++.+|+..+.
T Consensus 228 P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~ 307 (455)
T PF00232_consen 228 PLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPN 307 (455)
T ss_dssp ESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSS
T ss_pred CCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcc
Confidence 999988776 8999999999999999999999999999999988 9999999999999999999999999999987542
Q ss_pred CCccccCCCccCcccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCCC
Q 015605 340 SLNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLSL 401 (403)
Q Consensus 340 ~~~~~~~~~~~d~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~v~~rY~~~PI~ITENG~~~~ 401 (403)
................ .....+.+++||+|+|+|||++|++++++|+++||||||||+++.
T Consensus 308 ~~~~~~~~~~~~~~~~-~~~~~~~t~~gw~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~ 368 (455)
T PF00232_consen 308 PSSPPSYDSDAPFGQP-YNPGGPTTDWGWEIYPEGLRDVLRYLKDRYGNPPIYITENGIGDP 368 (455)
T ss_dssp STSSTTHEEEESEEEE-CETSSEBCTTSTBBETHHHHHHHHHHHHHHTSSEEEEEEE---EE
T ss_pred ccccccccCCcccccc-ccccccccccCcccccchHhhhhhhhccccCCCcEEEeccccccc
Confidence 2110000000000000 012234688999999999999999999999889999999999863
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=2.4e-100 Score=784.76 Aligned_cols=353 Identities=31% Similarity=0.535 Sum_probs=301.6
Q ss_pred CCCCCCeeeeecchhhccCCcCCCCCCCccceeec---cc--CCC------CC--CCCcCCCcccCcHHHHHHHHHcCCC
Q 015605 29 DFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFA---HA--GNV------HG--TGDIACDGYHKYKEDVKLMADTGLD 95 (403)
Q Consensus 29 ~fp~~FlwG~Atsa~QvEG~~~~~gkg~s~wd~~~---~~--~~~------~~--~~~~a~d~y~~~~eDi~l~~~lG~~ 95 (403)
+||++|+||+|||||||||++++||||+|+||.|+ +. +++ +. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 31 221 11 4688999999999999999999999
Q ss_pred ceeecccCcccccCCC-CCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHH
Q 015605 96 AYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFR 174 (403)
Q Consensus 96 ~~R~si~W~ri~P~g~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 174 (403)
+|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999985 458999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcceEEEeccCcccccc-----ccc-cCC-CCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015605 175 QFGDRVSYWTTVNEPNAFANL-----GYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDK 247 (403)
Q Consensus 175 ~~~~~v~~w~t~NEp~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~r~~~~~~ 247 (403)
+|||+|++|+||||||+++.. ||. .|. +|||.. .....++++||+++|||+|++++|++.
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~----------~~~~~~~~~h~~llAha~A~~~~~~~~--- 229 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED----------REQIMYQAAHYELVASALAVKTGHEIN--- 229 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc----------hhHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 999999999999999998766 444 343 255532 113479999999999999999999974
Q ss_pred CCCcEEEEecCCccccCCCCHHHHHHHHHHHHHhhccccCccccCCccHHHHHHhhcc--CCCCCHHHHhhh-cCCCcEE
Q 015605 248 QRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQV-KGSADFL 324 (403)
Q Consensus 248 ~~g~VG~~~~~~~~~P~~~~~~D~~aa~r~~~~~~~~~ldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~i-k~~~DFl 324 (403)
++++||++++..++||.+++|+|++||++++.+ +.||+||+++|+||+.|++.++++ .|.|+++|+++| ++++|||
T Consensus 230 ~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFl 308 (476)
T PRK09589 230 PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYI 308 (476)
T ss_pred CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEE
Confidence 367999999999999999999999999998854 679999999999999999999874 488999999999 5899999
Q ss_pred EEecccCeeeecCCCCCccccCCCccCcccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCC
Q 015605 325 GVINYYIVYVKDNPSSLNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLS 400 (403)
Q Consensus 325 GiNYYts~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~v~~rY~~~PI~ITENG~~~ 400 (403)
|||||+|.+|+....... .....+... ...+....+++||+|+|+|||.+|+++++||+ .||||||||+|.
T Consensus 309 GiNyYts~~v~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~~Y~-~Pi~ItENG~~~ 379 (476)
T PRK09589 309 GFSYYMSFATKFHEDNPQ---LDYVETRDL-VSNPYVKASEWGWQIDPAGLRYSLNWFWDHYQ-LPLFIVENGFGA 379 (476)
T ss_pred EEecccCcccccCCCCCC---CCccccccc-ccCCCcccCCCCCccCcHHHHHHHHHHHHhcC-CCEEEEeCCccc
Confidence 999999999975221100 000000000 01111236779999999999999999999996 699999999984
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=2e-99 Score=777.45 Aligned_cols=355 Identities=30% Similarity=0.541 Sum_probs=303.6
Q ss_pred ccCCCCCCCeeeeecchhhccCCcCCCCCCCccceeec---cc--CCC------C--CCCCcCCCcccCcHHHHHHHHHc
Q 015605 26 SKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFA---HA--GNV------H--GTGDIACDGYHKYKEDVKLMADT 92 (403)
Q Consensus 26 ~~~~fp~~FlwG~Atsa~QvEG~~~~~gkg~s~wd~~~---~~--~~~------~--~~~~~a~d~y~~~~eDi~l~~~l 92 (403)
++.+||++|+||+|||||||||++++||||+|+||.|+ +. +++ + .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999998 31 211 1 25689999999999999999999
Q ss_pred CCCceeecccCcccccCCC-CCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHH
Q 015605 93 GLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADV 171 (403)
Q Consensus 93 G~~~~R~si~W~ri~P~g~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~ 171 (403)
|+++|||||+||||+|+|. |.+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999999999999999985 568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcceEEEeccCccc-----ccccccc-CCC-CCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 015605 172 CFRQFGDRVSYWTTVNEPNAF-----ANLGYDY-GIA-PPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKY 244 (403)
Q Consensus 172 ~~~~~~~~v~~w~t~NEp~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~r~~~ 244 (403)
|+++|||+|++|+||||||++ +..||.. |.+ ||+.. .....++++||+++|||+|++++|+..
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~----------~~~~~~~~~h~~llAHa~A~~~~~~~~ 231 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN----------PEETMYQVLHHQFVASALAVKAARRIN 231 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc----------hhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987 6778874 665 44321 123589999999999999999999975
Q ss_pred cCCCCCcEEEEecCCccccCCCCHHHHHHHHHHHHHhhccccCccccCCccHHHHHHhhccC--CCCCHHHHhhh-cCCC
Q 015605 245 QDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRL--PAFSDRESKQV-KGSA 321 (403)
Q Consensus 245 ~~~~~g~VG~~~~~~~~~P~~~~~~D~~aa~r~~~~~~~~~ldp~~~G~YP~~~~~~l~~~l--p~~t~~d~~~i-k~~~ 321 (403)
++++||++++..++||.+++|+|++||++.+. ...+|+||+++|+||+.|++.++++. |.++++|+++| ++++
T Consensus 232 ---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~ 307 (477)
T PRK15014 232 ---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTC 307 (477)
T ss_pred ---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCC
Confidence 36899999999999999999999999998763 23359999999999999999998763 78999999999 5899
Q ss_pred cEEEEecccCeeeecCCCCCccccCCCccCcccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCC
Q 015605 322 DFLGVINYYIVYVKDNPSSLNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLS 400 (403)
Q Consensus 322 DFlGiNYYts~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~v~~rY~~~PI~ITENG~~~ 400 (403)
||||||||+|.+|+..+.... ....+.. .. ..+....+++||+|+|+|||.+|+++++||+ +||||||||+|+
T Consensus 308 DFlGiNyYt~~~v~~~~~~~~-~~~~~~~--~~--~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~-~Pi~ItENG~~~ 380 (477)
T PRK15014 308 DYLGFSYYMTNAVKAEGGTGD-AISGFEG--SV--PNPYVKASDWGWQIDPVGLRYALCELYERYQ-KPLFIVENGFGA 380 (477)
T ss_pred CEEEEcceeCeeeccCCCCCC-Ccccccc--cc--CCCCcccCCCCCccCcHHHHHHHHHHHHhcC-CCEEEeCCCCCC
Confidence 999999999999975321000 0000000 00 0111236779999999999999999999996 699999999985
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=9.2e-99 Score=771.34 Aligned_cols=353 Identities=29% Similarity=0.480 Sum_probs=307.4
Q ss_pred CCCCCCeeeeecchhhccCCcCCCCCCCccceeeccc-CCC--------------C--CCCCcCCCcccCcHHHHHHHHH
Q 015605 29 DFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--------------H--GTGDIACDGYHKYKEDVKLMAD 91 (403)
Q Consensus 29 ~fp~~FlwG~Atsa~QvEG~~~~~gkg~s~wd~~~~~-~~~--------------~--~~~~~a~d~y~~~~eDi~l~~~ 91 (403)
+||++|+||+|||||||||++++||||+|+||.+++. +++ + .++++||||||||+|||++|++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 5999999999999999999999999999999999873 321 0 1568899999999999999999
Q ss_pred cCCCceeecccCcccccCCC-CCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHH
Q 015605 92 TGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYAD 170 (403)
Q Consensus 92 lG~~~~R~si~W~ri~P~g~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~ 170 (403)
||+++|||||+|+||+|+|. +.+|++++++|+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999984 46899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcceEEEeccCccccccccc-cCC-CCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015605 171 VCFRQFGDRVSYWTTVNEPNAFANLGYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQ 248 (403)
Q Consensus 171 ~~~~~~~~~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~r~~~~~~~ 248 (403)
.|+++|||+|++|+||||||+++..||. .|. +|||... ....++++||+++|||+||+++|+..+
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~~--- 229 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ----------DQVKYQAAHHELVASALATKIAHEVNP--- 229 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc----------hHhHHHHHHHHHHHHHHHHHHHHHhCC---
Confidence 9999999999999999999999999996 564 4787421 235799999999999999999999753
Q ss_pred CCcEEEEecCCccccCCCCHHHHHHHHHHHHHhhccccCccccCCccHHHHHHhhcc--CCCCCHHHHhhhcCCCcEEEE
Q 015605 249 RGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVKGSADFLGV 326 (403)
Q Consensus 249 ~g~VG~~~~~~~~~P~~~~~~D~~aa~r~~~~~~~~~ldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~ik~~~DFlGi 326 (403)
+++||++++..+++|.+++++|++||++.+ +.+.||+||+++|+||+.|++.++++ +|.|+++|+++|++++|||||
T Consensus 230 ~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGi 308 (474)
T PRK09852 230 QNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSF 308 (474)
T ss_pred CCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEE
Confidence 689999999999999999999999998876 56889999999999999999999864 799999999999999999999
Q ss_pred ecccCeeeecCCCCCccccCCCccCcccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCC
Q 015605 327 INYYIVYVKDNPSSLNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLS 400 (403)
Q Consensus 327 NYYts~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~v~~rY~~~PI~ITENG~~~ 400 (403)
|||+|.+|+............... ....+..+.+++||+|+|+|||.+|+++++||+ .||||||||++.
T Consensus 309 NyYt~~~v~~~~~~~~~~~~~~~~----~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~-~Pi~ItENG~~~ 377 (474)
T PRK09852 309 SYYASRCASAEMNANNSSAANVVK----SLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQ-KPLFLVENGLGA 377 (474)
T ss_pred ccccCeecccCCCCCCCCcCCcee----cccCCCcccCCCCCeeChHHHHHHHHHHHHhcC-CCEEEeCCCCCC
Confidence 999999997532100000000000 001111246789999999999999999999997 689999999984
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=9.5e-98 Score=758.40 Aligned_cols=346 Identities=42% Similarity=0.778 Sum_probs=313.2
Q ss_pred CCCCCeeeeecchhhccCCcCCCCCCCccceeeccc-CCC--CCCCCcCCCcccCcHHHHHHHHHcCCCceeecccCccc
Q 015605 30 FPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--HGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRL 106 (403)
Q Consensus 30 fp~~FlwG~Atsa~QvEG~~~~~gkg~s~wd~~~~~-~~~--~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri 106 (403)
||++|+||+|||||||||+++++|||+|+||.+++. ++. +.++++||||||+|+|||++||+||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 899999999999999999999999999999999874 433 34788999999999999999999999999999999999
Q ss_pred ccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCcceEEEe
Q 015605 107 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTV 186 (403)
Q Consensus 107 ~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~ 186 (403)
+|+|+|.+|++++++|+++|++|+++||+|+|||+|||+|+||+++ |||.++++++.|++||+.|+++|||+|++|+|+
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9998899999999999999999999999999999999999999987 999999999999999999999999999999999
Q ss_pred ccCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCCccccCCC
Q 015605 187 NEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLTN 266 (403)
Q Consensus 187 NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~r~~~~~~~~g~VG~~~~~~~~~P~~~ 266 (403)
||||+++..||..|.+||+.++. ...++++||+++|||+|++++|++.+ +++||++++..+++|.++
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~~----------~~~~~~~hnll~Aha~A~~~~~~~~~---~~~IGi~~~~~~~~P~~~ 226 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRDL----------RAALQAAHHLLLAHGLAVQALRANGP---GAQVGIVLNLTPVYPASD 226 (427)
T ss_pred cCcceecccchhhccCCCCCccH----------HHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCCeeeeCCC
Confidence 99999999999999999985421 34789999999999999999999754 689999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccccCccccCCccHHHHHHhhccCCCCCHHHHhhhcCCCcEEEEecccCeeeecCCCCCccccC
Q 015605 267 STEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVKDNPSSLNKKLR 346 (403)
Q Consensus 267 ~~~D~~aa~r~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ik~~~DFlGiNYYts~~v~~~~~~~~~~~~ 346 (403)
+++|+.||++.+++.++||+||++.|+||..|++.++ .+|.++++|++++++++||||||||++.+|+...... .
T Consensus 227 ~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~----~ 301 (427)
T TIGR03356 227 SPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG----A 301 (427)
T ss_pred CHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC----C
Confidence 9999999999999999999999999999999999997 4799999999999999999999999999997532110 0
Q ss_pred CCccCcccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCC
Q 015605 347 DWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLS 400 (403)
Q Consensus 347 ~~~~d~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~v~~rY~~~PI~ITENG~~~ 400 (403)
... . ...+.+.+++||+|+|+|||.+|+++++||+++||||||||+|+
T Consensus 302 ~~~----~--~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~ 349 (427)
T TIGR03356 302 GFV----E--VPEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPIYITENGAAF 349 (427)
T ss_pred Ccc----c--cCCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCEEEeCCCCCc
Confidence 000 0 01122457799999999999999999999986789999999984
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.33 E-value=2.2e-12 Score=130.04 Aligned_cols=109 Identities=24% Similarity=0.443 Sum_probs=88.6
Q ss_pred cCcHHHHHHHHHcCCCceee-cccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhh-----
Q 015605 80 HKYKEDVKLMADTGLDAYRF-SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY----- 153 (403)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~-si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~----- 153 (403)
..+++|+++|+++|+|++|+ .++|+++||+ +|++| +..+|++|+.+.++||++++.+.....|.|+.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~-eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE-EGQYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB-TTB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCC-CCeee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 46899999999999999996 5799999999 89999 77799999999999999999999999999998653
Q ss_pred ----------CC-----CCCchhHHHHHHHHHHHHHHhCCC--cceEEEeccCccc
Q 015605 154 ----------GG-----WINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNAF 192 (403)
Q Consensus 154 ----------gg-----~~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~~ 192 (403)
|+ ..+|...+.+.++++.++++|++. |-.|.+.|||...
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 11 234567888899999999999985 8899999999863
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.28 E-value=9.6e-12 Score=119.28 Aligned_cols=109 Identities=22% Similarity=0.358 Sum_probs=90.7
Q ss_pred CcHHHHHHHHHcCCCceeecccCcccc-cCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCC-CC
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSRLI-PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGW-IN 158 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~-P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~-~~ 158 (403)
..++|++.|+++|+|++|+.|.|..++ |...+.++...+++++++|+.|.++||.++++||+. |.|.... ++. ..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 668999999999999999999998888 553456999999999999999999999999999975 7774322 233 33
Q ss_pred chhHHHHHHHHHHHHHHhCC--CcceEEEeccCccc
Q 015605 159 RTIVKDFTAYADVCFRQFGD--RVSYWTTVNEPNAF 192 (403)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~~~ 192 (403)
....+.|.++++.++++|++ .|..|.++|||+..
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 45678899999999999954 58899999999964
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.21 E-value=7.6e-10 Score=105.88 Aligned_cols=82 Identities=20% Similarity=0.364 Sum_probs=71.6
Q ss_pred cCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcc--eEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhCCC
Q 015605 102 SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP--HVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDR 179 (403)
Q Consensus 102 ~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p--~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~ 179 (403)
.|++++|+ +|.+| ++..|.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||+++
T Consensus 2 kW~~~ep~-~G~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~-~---~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 2 KWDSTEPS-RGQFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL-S---KETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred CcccccCC-CCccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC-C---HHHHHHHHHHHHHHHHHHhCCc
Confidence 69999999 89999 566899999999999995 4456788899998642 2 5677899999999999999999
Q ss_pred cceEEEeccCcc
Q 015605 180 VSYWTTVNEPNA 191 (403)
Q Consensus 180 v~~w~t~NEp~~ 191 (403)
|..|.++|||..
T Consensus 74 i~~wdV~NE~~~ 85 (254)
T smart00633 74 IYAWDVVNEALH 85 (254)
T ss_pred ceEEEEeeeccc
Confidence 999999999985
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.90 E-value=6.9e-08 Score=95.32 Aligned_cols=207 Identities=18% Similarity=0.266 Sum_probs=122.1
Q ss_pred HHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeecc---CCCcHHHHhhhCCCCC-
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH---FDLPQALEDEYGGWIN- 158 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h---~~~P~~l~~~~gg~~~- 158 (403)
++=+++||+.|+|++|+-+ | +.|...|.-| ++.-.++..+.+++||+.++++|- |.=|.-- .+-..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q-~~P~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQ-NKPAAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB--B--TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCC-CCCccCCCC
Confidence 4457999999999999987 4 3466226666 677889999999999999999983 3333221 12257887
Q ss_pred --chhHHHHHHHHHHHHHHhCC---CcceEEEeccCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHHHHHHHH
Q 015605 159 --RTIVKDFTAYADVCFRQFGD---RVSYWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAH 233 (403)
Q Consensus 159 --~~~~~~f~~ya~~~~~~~~~---~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~hn~llAH 233 (403)
.+..+.-.+|.+.+.+.+++ .++++.+=||.+. |.+ +|.|.. ..+.-+-.++.|-
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~----Gml---wp~g~~-------------~~~~~~a~ll~ag 159 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINN----GML---WPDGKP-------------SNWDNLAKLLNAG 159 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGG----EST---BTTTCT-------------T-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccc----ccc---CcCCCc-------------cCHHHHHHHHHHH
Confidence 56788889999999888765 5888999999985 222 344432 1223334455554
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEecCCccccCCCCHHHHHHHHHHHHHhhccccCccccCCccHHHHHHhhccCCCCCHHH
Q 015605 234 ASVARLYRKKYQDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRE 313 (403)
Q Consensus 234 a~A~~~~r~~~~~~~~g~VG~~~~~~~~~P~~~~~~D~~aa~r~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d 313 (403)
++++|+..| ..+|-+.+.. | .|.... .||.|-+.
T Consensus 160 ---~~AVr~~~p---~~kV~lH~~~----~-----~~~~~~--------~~~f~~l~----------------------- 193 (332)
T PF07745_consen 160 ---IKAVREVDP---NIKVMLHLAN----G-----GDNDLY--------RWFFDNLK----------------------- 193 (332)
T ss_dssp ---HHHHHTHSS---TSEEEEEES-----T-----TSHHHH--------HHHHHHHH-----------------------
T ss_pred ---HHHHHhcCC---CCcEEEEECC----C-----CchHHH--------HHHHHHHH-----------------------
Confidence 445555544 4566554431 1 111111 11222111
Q ss_pred HhhhcCCCcEEEEecccCeeeecCCCCCccccCCCccCcccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEE
Q 015605 314 SKQVKGSADFLGVINYYIVYVKDNPSSLNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYI 393 (403)
Q Consensus 314 ~~~ik~~~DFlGiNYYts~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~v~~rY~~~PI~I 393 (403)
......|.||+|||.- |.-....|+..|+.+.+||+ +||+|
T Consensus 194 --~~g~d~DviGlSyYP~------------------------------------w~~~l~~l~~~l~~l~~ry~-K~V~V 234 (332)
T PF07745_consen 194 --AAGVDFDVIGLSYYPF------------------------------------WHGTLEDLKNNLNDLASRYG-KPVMV 234 (332)
T ss_dssp --HTTGG-SEEEEEE-ST------------------------------------TST-HHHHHHHHHHHHHHHT--EEEE
T ss_pred --hcCCCcceEEEecCCC------------------------------------CcchHHHHHHHHHHHHHHhC-CeeEE
Confidence 1123459999999941 22245799999999999995 89999
Q ss_pred ecCCCCCC
Q 015605 394 HENGSLSL 401 (403)
Q Consensus 394 TENG~~~~ 401 (403)
+|.|+...
T Consensus 235 ~Et~yp~t 242 (332)
T PF07745_consen 235 VETGYPWT 242 (332)
T ss_dssp EEE---SB
T ss_pred Eecccccc
Confidence 99998653
No 18
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.45 E-value=4.5e-07 Score=96.59 Aligned_cols=107 Identities=21% Similarity=0.383 Sum_probs=85.2
Q ss_pred CcHHHHHHHHHcCCCceeec-ccCcccccCCCCCCChHhHHHHHHH-HHHHHHcCCcceEee-ccCCCcHHHHhhh----
Q 015605 81 KYKEDVKLMADTGLDAYRFS-ISWSRLIPNGRGPVNPKGLQYYNNL-INELISYGIQPHVTL-HHFDLPQALEDEY---- 153 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~s-i~W~ri~P~g~g~~n~~~~~~y~~~-i~~l~~~gi~p~vtL-~h~~~P~~l~~~~---- 153 (403)
-|.+|++.||++|+|++|.+ ++|++++|+ .|.+|. .+.|.. ++.+.+.||..++.- .....|.|+.++|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fdf---~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFDF---TWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccCc---ccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 36789999999999999995 699999999 899995 477777 999999999999988 7789999998764
Q ss_pred -----------CCCCCchhHH-HHHHHHHH----HHHH-hCCC--cceEEEeccCcc
Q 015605 154 -----------GGWINRTIVK-DFTAYADV----CFRQ-FGDR--VSYWTTVNEPNA 191 (403)
Q Consensus 154 -----------gg~~~~~~~~-~f~~ya~~----~~~~-~~~~--v~~w~t~NEp~~ 191 (403)
|+|.+-.... .+..|++. +.+| ||+. |-.|.+-||=..
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~ 163 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGG 163 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCC
Confidence 5564322222 35666655 7788 8764 889999997444
No 19
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.18 E-value=6e-06 Score=84.36 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=85.8
Q ss_pred CCCcccCc-----HHHHHHHHHcCCCceeecccCcccccCC---CCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCc
Q 015605 75 ACDGYHKY-----KEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (403)
Q Consensus 75 a~d~y~~~-----~eDi~l~~~lG~~~~R~si~W~ri~P~g---~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P 146 (403)
..-...+| ++|+..||+.|+|++|+.+.|-.+.+.+ +...+...+.+.+++|+..++.||.+++.||+..-+
T Consensus 63 ~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~ 142 (407)
T COG2730 63 QGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGG 142 (407)
T ss_pred cccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCC
Confidence 33445556 8999999999999999999866655542 233334556699999999999999999999986522
Q ss_pred HHHHhhh---CCCC-CchhHHHHHHHHHHHHHHhCCC--cceEEEeccCcc
Q 015605 147 QALEDEY---GGWI-NRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNA 191 (403)
Q Consensus 147 ~~l~~~~---gg~~-~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~ 191 (403)
.-=.+.- +.+. ..++++++.+-.+.++.||++. |-...++|||+.
T Consensus 143 ~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 143 NNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2111110 1122 3567899999999999999973 555689999995
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.04 E-value=1.3e-05 Score=83.69 Aligned_cols=106 Identities=24% Similarity=0.422 Sum_probs=64.8
Q ss_pred cHHHHHHHH-HcCCCceeec--c--cCccccc-CCCCC--CChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhh-
Q 015605 82 YKEDVKLMA-DTGLDAYRFS--I--SWSRLIP-NGRGP--VNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDE- 152 (403)
Q Consensus 82 ~~eDi~l~~-~lG~~~~R~s--i--~W~ri~P-~g~g~--~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~- 152 (403)
+++.+..++ ++|++.+||- + +..-... ++.|. +| +...|+++|.|+++||+|+|.|.. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~~ 115 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF--MPMALASGY 115 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS-
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe--chhhhcCCC
Confidence 566666664 9999999986 2 2222222 22332 68 788999999999999999999974 77776422
Q ss_pred -----hCCCC-CchhHHHHHHHHHHHHHHhCC-----Ccce--EEEeccCccc
Q 015605 153 -----YGGWI-NRTIVKDFTAYADVCFRQFGD-----RVSY--WTTVNEPNAF 192 (403)
Q Consensus 153 -----~gg~~-~~~~~~~f~~ya~~~~~~~~~-----~v~~--w~t~NEp~~~ 192 (403)
+.|+. .|+..+.|.++++.+++|+-+ .|.. |.+||||++.
T Consensus 116 ~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 116 QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp -EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 12222 356788888888777665543 4664 5899999973
No 21
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.98 E-value=0.00031 Score=75.43 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=65.5
Q ss_pred CcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHh-------hh
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED-------EY 153 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~-------~~ 153 (403)
.+..|+++||++|+|++|+|- .|. + ..+++.|-+.||-++.-+.-+....|... ..
T Consensus 314 ~~~~d~~l~K~~G~N~vR~sh-----~p~-----~-------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~ 376 (604)
T PRK10150 314 LNVHDHNLMKWIGANSFRTSH-----YPY-----S-------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPK 376 (604)
T ss_pred HHHHHHHHHHHCCCCEEEecc-----CCC-----C-------HHHHHHHHhcCcEEEEeccccccccccccccccccccc
Confidence 478899999999999999952 243 2 35678888999988766543322222210 00
Q ss_pred CCCC----CchhHHHHHHHHHHHHHHhCCC--cceEEEeccCc
Q 015605 154 GGWI----NRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (403)
Q Consensus 154 gg~~----~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~ 190 (403)
..|. +++..+.+.+-++.++++++++ |-.|.+-||+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 377 ETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 1222 3567788889999999999886 88999999974
No 22
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.95 E-value=0.0025 Score=61.21 Aligned_cols=134 Identities=19% Similarity=0.376 Sum_probs=83.6
Q ss_pred CCCCCCeeeeecch-hhccCCcCCCCCCCccceeecccCCCCCCCCcCCCcccCcHHH-HHHHHHcCCCceeecccCccc
Q 015605 29 DFPPGFLFGASTSA-YQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKED-VKLMADTGLDAYRFSISWSRL 106 (403)
Q Consensus 29 ~fp~~FlwG~Atsa-~QvEG~~~~~gkg~s~wd~~~~~~~~~~~~~~a~d~y~~~~eD-i~l~~~lG~~~~R~si~W~ri 106 (403)
..|+||+.|+-.|. .|+|-. ++| | .. .++. ++| ++.+|+.|+|.+|+-| |-.=
T Consensus 34 ~~~~dFikGaDis~l~~lE~~---Gvk----f---~d-----~ng~---------~qD~~~iLK~~GvNyvRlRv-wndP 88 (403)
T COG3867 34 NSPNDFIKGADISSLIELENS---GVK----F---FD-----TNGV---------RQDALQILKNHGVNYVRLRV-WNDP 88 (403)
T ss_pred CChHHhhccccHHHHHHHHHc---Cce----E---Ec-----cCCh---------HHHHHHHHHHcCcCeEEEEE-ecCC
Confidence 47999999997654 677732 222 1 11 1121 344 6999999999999976 2211
Q ss_pred c-cCCC----CCCChHhHHHHHHHHHHHHHcCCcceEeec---cCCCcHHHHhhhCCCCCc---hhHHHHHHHHHHHHHH
Q 015605 107 I-PNGR----GPVNPKGLQYYNNLINELISYGIQPHVTLH---HFDLPQALEDEYGGWINR---TIVKDFTAYADVCFRQ 175 (403)
Q Consensus 107 ~-P~g~----g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---h~~~P~~l~~~~gg~~~~---~~~~~f~~ya~~~~~~ 175 (403)
. -+|. |.=| ++.--++-.+.+.+||++++..| ||.=|..- ++-..|.+- +.-.+.-+|.+.+...
T Consensus 89 ~dsngn~yggGnnD---~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPkaW~~l~fe~lk~avy~yTk~~l~~ 164 (403)
T COG3867 89 YDSNGNGYGGGNND---LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPKAWENLNFEQLKKAVYSYTKYVLTT 164 (403)
T ss_pred ccCCCCccCCCcch---HHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcHHhhhcCHHHHHHHHHHHHHHHHHH
Confidence 1 1121 2234 44556777889999999999998 57666543 333567653 3344555666666666
Q ss_pred hCC---CcceEEEeccCcc
Q 015605 176 FGD---RVSYWTTVNEPNA 191 (403)
Q Consensus 176 ~~~---~v~~w~t~NEp~~ 191 (403)
+.+ ...+..+=||-|-
T Consensus 165 m~~eGi~pdmVQVGNEtn~ 183 (403)
T COG3867 165 MKKEGILPDMVQVGNETNG 183 (403)
T ss_pred HHHcCCCccceEeccccCC
Confidence 654 4666678899773
No 23
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.85 E-value=7.6e-05 Score=73.91 Aligned_cols=124 Identities=18% Similarity=0.254 Sum_probs=86.6
Q ss_pred CCCCCeeeeecchhhccCCcCCCCCCCccceeecccCCCCCCCCcCCCcccCcHHHHHHHHHcCCCceeecccCcccccC
Q 015605 30 FPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPN 109 (403)
Q Consensus 30 fp~~FlwG~Atsa~QvEG~~~~~gkg~s~wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~ 109 (403)
.+.+|.+|+|.++.++++.. .+ ++-+ .+..+.=+..-..-|..++|.
T Consensus 6 ~~~~f~~G~av~~~~~~~~~--------~~-----------------------~~~~--~~~Fn~~t~eN~~Kw~~~e~~ 52 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP--------RY-----------------------RELF--AKHFNSVTPENEMKWGSIEPE 52 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH--------HH-----------------------HHHH--HHH-SEEEESSTTSHHHHESB
T ss_pred HhccCCEEEEechhHcCCcH--------HH-----------------------HHHH--HHhCCeeeeccccchhhhcCC
Confidence 45789999999999988741 00 1111 122222233334789999999
Q ss_pred CCCCCChHhHHHHHHHHHHHHHcCCcceE--eeccCCCcHHHHhhhCCCCCch---hHHHHHHHHHHHHHHhCC--Ccce
Q 015605 110 GRGPVNPKGLQYYNNLINELISYGIQPHV--TLHHFDLPQALEDEYGGWINRT---IVKDFTAYADVCFRQFGD--RVSY 182 (403)
Q Consensus 110 g~g~~n~~~~~~y~~~i~~l~~~gi~p~v--tL~h~~~P~~l~~~~gg~~~~~---~~~~f~~ya~~~~~~~~~--~v~~ 182 (403)
+|.+| ++..|++++-++++||++-- .+.|--.|.|+... .-+...+ ..+...+|.+.+++||++ +|..
T Consensus 53 -~g~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~ 127 (320)
T PF00331_consen 53 -PGRFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKGRIYA 127 (320)
T ss_dssp -TTBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESE
T ss_pred -CCccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccccceEE
Confidence 89999 55689999999999999873 44466799999753 1223223 688899999999999994 8999
Q ss_pred EEEeccCcc
Q 015605 183 WTTVNEPNA 191 (403)
Q Consensus 183 w~t~NEp~~ 191 (403)
|=+.|||-.
T Consensus 128 WDVvNE~i~ 136 (320)
T PF00331_consen 128 WDVVNEAID 136 (320)
T ss_dssp EEEEES-B-
T ss_pred EEEeeeccc
Confidence 999999974
No 24
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.55 E-value=8e-05 Score=73.70 Aligned_cols=97 Identities=11% Similarity=0.170 Sum_probs=66.5
Q ss_pred CcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec--------cCCCcHHHHhh
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HFDLPQALEDE 152 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--------h~~~P~~l~~~ 152 (403)
.|++-++.||++|+|++-.-|.|.-.||. +|++|.++..=.+.+|+.++++||.+++-.- .-.+|.||..+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~-~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~ 103 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPE-EGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK 103 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSB-TTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCC-CCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcc
Confidence 47888999999999999999999999999 8999999988899999999999999776532 24599999865
Q ss_pred hCCC---CCchhHHHHHHHHHHHHHHhCC
Q 015605 153 YGGW---INRTIVKDFTAYADVCFRQFGD 178 (403)
Q Consensus 153 ~gg~---~~~~~~~~f~~ya~~~~~~~~~ 178 (403)
.+.. .++...++-.+|.+.+++...+
T Consensus 104 ~~~~~R~~~~~~~~~~~~~~~~~~~~~~~ 132 (319)
T PF01301_consen 104 PDIRLRTNDPPFLEAVERWYRALAKIIKP 132 (319)
T ss_dssp TTS-SSSS-HHHHHHHHHHHHHHHHHHGG
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 3332 2345556666666666666543
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.41 E-value=0.00013 Score=73.29 Aligned_cols=106 Identities=14% Similarity=0.326 Sum_probs=80.4
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec------------cCCCc
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH------------HFDLP 146 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~------------h~~~P 146 (403)
+.-.+.+++.+|++|++.+-+.+-|.-+|+.|++++| +..|+++++.+++.|++..+.|. +.-+|
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 4478899999999999999999999999999999999 55599999999999999888763 34789
Q ss_pred HHHHhh-----------hCC--------CCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCc
Q 015605 147 QALEDE-----------YGG--------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (403)
Q Consensus 147 ~~l~~~-----------~gg--------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 190 (403)
.|+.++ .|. |....+++.+.+|-+-+.++|.+.. -|+-|..
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 998753 122 3444449999999999999997764 4555543
No 26
>PLN02161 beta-amylase
Probab=97.36 E-value=0.00049 Score=70.56 Aligned_cols=111 Identities=15% Similarity=0.229 Sum_probs=87.3
Q ss_pred CCcccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccC------------
Q 015605 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF------------ 143 (403)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~------------ 143 (403)
.++....+..++.+|.+|++.+-+.+-|.-+|+++++++|+ ..|+++++.+++.|++..+.|...
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKW---SLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 46666788899999999999999999999999999999995 559999999999999988777522
Q ss_pred CCcHHHHhh-----------hCC----------------CCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCcc
Q 015605 144 DLPQALEDE-----------YGG----------------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (403)
Q Consensus 144 ~~P~~l~~~-----------~gg----------------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 191 (403)
-+|+|+.+. ..| +..+.-++.+.+|-+-+.++|.+... -|+.|..+
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 499998752 012 12233467888888888888887654 36666554
No 27
>PLN02803 beta-amylase
Probab=97.36 E-value=0.00047 Score=71.03 Aligned_cols=107 Identities=18% Similarity=0.317 Sum_probs=83.7
Q ss_pred cCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec-c-----------CCCcH
Q 015605 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDLPQ 147 (403)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-h-----------~~~P~ 147 (403)
.-.+..++.+|.+|++.+-+.+-|.-+|+++++++|+ ..|+++++.+++.|++..+.|. | .-+|+
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNW---EGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 4478899999999999999999999999999999995 5599999999999999887765 3 35999
Q ss_pred HHHhhh-----------CC----------------CCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCcc
Q 015605 148 ALEDEY-----------GG----------------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (403)
Q Consensus 148 ~l~~~~-----------gg----------------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 191 (403)
|+.+.. .| +..+.-++.+.+|-+-+.++|.+... -|+.|..+
T Consensus 184 WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 184 WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 987520 12 12233467888888888888877654 46666554
No 28
>PLN03059 beta-galactosidase; Provisional
Probab=97.27 E-value=0.00047 Score=75.18 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=76.6
Q ss_pred CcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec--------cCCCcHHHHhh
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HFDLPQALEDE 152 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--------h~~~P~~l~~~ 152 (403)
.|++=++.||++|+|++-.=+.|.--||. +|++|.+|..=..++|+.+.+.||-+|+-.- .-.+|.||.+.
T Consensus 60 ~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~ 138 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYV 138 (840)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcC
Confidence 47788999999999999999999999999 8999999999999999999999998877532 46899999754
Q ss_pred hCCCC----CchhHHHHHHHHHHHHHHh
Q 015605 153 YGGWI----NRTIVKDFTAYADVCFRQF 176 (403)
Q Consensus 153 ~gg~~----~~~~~~~f~~ya~~~~~~~ 176 (403)
.|.. ++...++-.+|.+.+++..
T Consensus 139 -~~i~~Rs~d~~fl~~v~~~~~~l~~~l 165 (840)
T PLN03059 139 -PGIEFRTDNGPFKAAMQKFTEKIVDMM 165 (840)
T ss_pred -CCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 4532 4455555666666666665
No 29
>PLN00197 beta-amylase; Provisional
Probab=97.27 E-value=0.00094 Score=69.09 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=84.4
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec-c-----------CCCc
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDLP 146 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-h-----------~~~P 146 (403)
-.-.+..++.+|.+|++.+-+.+-|.-+|+++++++|++ .|+++++.+++.|++..+.|. | .-+|
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWs---gY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP 202 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWG---GYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLP 202 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 334788999999999999999999999999999999954 599999999999999887775 3 3599
Q ss_pred HHHHhhh-----------CC----------------CCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCcc
Q 015605 147 QALEDEY-----------GG----------------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (403)
Q Consensus 147 ~~l~~~~-----------gg----------------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 191 (403)
+|+.+.. .| +..+.-++.+.+|-+-+-++|.+... -|+.|..+
T Consensus 203 ~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 203 KWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 9987520 12 12233478888888888888877654 35666554
No 30
>PLN02801 beta-amylase
Probab=97.11 E-value=0.0023 Score=65.73 Aligned_cols=101 Identities=19% Similarity=0.375 Sum_probs=80.1
Q ss_pred CcccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec-c-----------CC
Q 015605 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FD 144 (403)
Q Consensus 77 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-h-----------~~ 144 (403)
.+-.-.+..++.+|.+|++.+-+.+-|.-+|+++++++|+ ..|+++++.+++.|++..+.|. | .-
T Consensus 34 ~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 110 (517)
T PLN02801 34 EDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDW---SAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIP 110 (517)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 3344578899999999999999999999999999999995 4599999999999999877765 2 36
Q ss_pred CcHHHHhhh-----------CC----------------CCCchhHHHHHHHHHHHHHHhCCCc
Q 015605 145 LPQALEDEY-----------GG----------------WINRTIVKDFTAYADVCFRQFGDRV 180 (403)
Q Consensus 145 ~P~~l~~~~-----------gg----------------~~~~~~~~~f~~ya~~~~~~~~~~v 180 (403)
+|+|+.+.. .| +..+.-++.+.+|-+-+.++|.+..
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999987520 12 1223446888888888888887754
No 31
>PLN02905 beta-amylase
Probab=97.02 E-value=0.0026 Score=66.60 Aligned_cols=102 Identities=14% Similarity=0.253 Sum_probs=80.9
Q ss_pred CCcccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec-c-----------C
Q 015605 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------F 143 (403)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-h-----------~ 143 (403)
.++..-.+..++.+|.+|++.+-+.+-|.-+|+++++++|+ ..|+++++.+++.|++..+.|. | .
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdW---sgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNW---NGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 45566688899999999999999999999999999999995 5599999999999999887765 3 3
Q ss_pred CCcHHHHhh--------h---CCC----------------CCchhHHHHHHHHHHHHHHhCCCc
Q 015605 144 DLPQALEDE--------Y---GGW----------------INRTIVKDFTAYADVCFRQFGDRV 180 (403)
Q Consensus 144 ~~P~~l~~~--------~---gg~----------------~~~~~~~~f~~ya~~~~~~~~~~v 180 (403)
-+|+|+.+. | .|- ..+.-++.+.+|-+-+.++|.+.+
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl 422 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFF 422 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 699998752 0 121 224446888888888888877643
No 32
>PLN02705 beta-amylase
Probab=96.91 E-value=0.0032 Score=65.84 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=78.7
Q ss_pred cccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec-c-----------CCC
Q 015605 78 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDL 145 (403)
Q Consensus 78 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-h-----------~~~ 145 (403)
+-.-.+..++.+|.+|++.+-+.+-|.-+|+++++++|+ ..|+++++.+++.|++..+.|. | .-+
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVW---SGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 345578899999999999999999999999999999995 5599999999999999877765 3 359
Q ss_pred cHHHHhhh-----------CCC----------------CCchhHHHHHHHHHHHHHHhCCC
Q 015605 146 PQALEDEY-----------GGW----------------INRTIVKDFTAYADVCFRQFGDR 179 (403)
Q Consensus 146 P~~l~~~~-----------gg~----------------~~~~~~~~f~~ya~~~~~~~~~~ 179 (403)
|.|+.+.- .|- ..+.-++.+.+|.+-+-++|.+.
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99987520 121 22344688888888888888764
No 33
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.76 E-value=0.0032 Score=63.17 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=49.5
Q ss_pred CCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhC----C-----CCCchhHHHHHHHHHHHHHHhCC---
Q 015605 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYG----G-----WINRTIVKDFTAYADVCFRQFGD--- 178 (403)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~g----g-----~~~~~~~~~f~~ya~~~~~~~~~--- 178 (403)
+|.+|+.+=+-=+.++++++++|+.-++ ++-+..|.|+... | + =+.++..+.|++|-..|+++|..
T Consensus 95 dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N-G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI 172 (384)
T PF14587_consen 95 DGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN-GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGI 172 (384)
T ss_dssp TS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS-SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT-
T ss_pred CCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC-CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCC
Confidence 5777765444556689999999999876 5556777777532 2 1 14578899999999999999943
Q ss_pred CcceEEEeccCcc
Q 015605 179 RVSYWTTVNEPNA 191 (403)
Q Consensus 179 ~v~~w~t~NEp~~ 191 (403)
.+++-.++|||+.
T Consensus 173 ~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 173 NFDYISPFNEPQW 185 (384)
T ss_dssp -EEEEE--S-TTS
T ss_pred ccceeCCcCCCCC
Confidence 5899999999994
No 34
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.005 Score=59.99 Aligned_cols=86 Identities=20% Similarity=0.301 Sum_probs=71.2
Q ss_pred cccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceE-e-eccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhC
Q 015605 100 SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV-T-LHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 100 si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~v-t-L~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 177 (403)
-.-|.-|+|+ +|.+|.+ .=|.+.+-++++||..-- | +.|--.|.|+.. -.+..+...+...++...|++||+
T Consensus 66 emKwe~i~p~-~G~f~Fe---~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rYk 139 (345)
T COG3693 66 EMKWEAIEPE-RGRFNFE---AADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRYK 139 (345)
T ss_pred ccccccccCC-CCccCcc---chHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhcc
Confidence 4578899998 8999954 468999999999997543 2 335678999852 347778999999999999999999
Q ss_pred CCcceEEEeccCcc
Q 015605 178 DRVSYWTTVNEPNA 191 (403)
Q Consensus 178 ~~v~~w~t~NEp~~ 191 (403)
+.|..|=+.|||--
T Consensus 140 g~~~sWDVVNE~vd 153 (345)
T COG3693 140 GSVASWDVVNEAVD 153 (345)
T ss_pred CceeEEEecccccC
Confidence 99999999999975
No 35
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.35 E-value=0.022 Score=55.64 Aligned_cols=93 Identities=15% Similarity=0.169 Sum_probs=62.7
Q ss_pred cccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCC--
Q 015605 78 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGG-- 155 (403)
Q Consensus 78 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg-- 155 (403)
....++.|+++||++|+|++|++- .|. + .++++.|-+.||-++.-+.....-.|- ..|-
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~-----~-------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~~~ 94 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPP-----S-------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGNCN 94 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S-------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSCTS
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccC-----c-------HHHHHHHhhcCCEEEEeccccccCccc--cCCccc
Confidence 356789999999999999999842 233 1 456778888999988766432211111 1110
Q ss_pred --CCCchhHHHHHHHHHHHHHHhCCC--cceEEEeccC
Q 015605 156 --WINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEP 189 (403)
Q Consensus 156 --~~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp 189 (403)
-.+++..+.+.+-++..++++.++ |-.|.+.||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 136778888888999999999875 9999999998
No 36
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.16 E-value=0.043 Score=53.62 Aligned_cols=99 Identities=14% Similarity=0.270 Sum_probs=61.6
Q ss_pred HHHHHHcCCCceeecc--cCccc-----ccC-----CC-C-----CCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcH
Q 015605 86 VKLMADTGLDAYRFSI--SWSRL-----IPN-----GR-G-----PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQ 147 (403)
Q Consensus 86 i~l~~~lG~~~~R~si--~W~ri-----~P~-----g~-g-----~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 147 (403)
++..|+-|+|.+|+.+ .|... .|. .+ + .+|++=+++.+++|+.|.++||+|.+.+.| +.|.
T Consensus 36 L~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g~~~ 114 (289)
T PF13204_consen 36 LDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-GCPY 114 (289)
T ss_dssp HHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--HHHH
T ss_pred HHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-CCcc
Confidence 6777999999999998 44433 111 01 1 278999999999999999999999877765 2221
Q ss_pred HHHhhhCCCCC---chhHHHHHHHHHHHHHHhCCC-cceEEEeccC
Q 015605 148 ALEDEYGGWIN---RTIVKDFTAYADVCFRQFGDR-VSYWTTVNEP 189 (403)
Q Consensus 148 ~l~~~~gg~~~---~~~~~~f~~ya~~~~~~~~~~-v~~w~t~NEp 189 (403)
.+ +.|.. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 115 ---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 115 ---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp ---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred ---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 12 44543 233678899999999999998 4779998885
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.61 E-value=0.057 Score=48.38 Aligned_cols=102 Identities=17% Similarity=0.323 Sum_probs=69.9
Q ss_pred CcHHHHHHHHHcCCCceeecccCcccc-----cCC--CCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhh
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSRLI-----PNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY 153 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~-----P~g--~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~ 153 (403)
+|+++++.|+++|++++=+. |+... |.. ++.+.....+....+++++.+.||++++.|+. -|.|.. +
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~-~- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWD-Q- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhh-c-
Confidence 58999999999999998654 44432 331 11223344578999999999999999999974 356664 2
Q ss_pred CCCCCch-hHHHHHHHHHHHHHHhCCC--cceEEEeccCcc
Q 015605 154 GGWINRT-IVKDFTAYADVCFRQFGDR--VSYWTTVNEPNA 191 (403)
Q Consensus 154 gg~~~~~-~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~ 191 (403)
.+.+ -++.=..-++.+.++||.+ +..|-+-.|+.-
T Consensus 95 ---~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~ 132 (166)
T PF14488_consen 95 ---GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDD 132 (166)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCC
Confidence 2211 2333345677788889874 777777777763
No 38
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.33 E-value=0.09 Score=55.82 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=76.5
Q ss_pred CcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEee--------ccCCCcHHHHhh
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--------HHFDLPQALEDE 152 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--------~h~~~P~~l~~~ 152 (403)
.|++=|+.+|++|+|++-.=+.|.--||. +|++|.+|..=..++|..+.++|+-+++-+ .|-.+|.||...
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~-~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~ 128 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPS-PGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNV 128 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCC-CCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhC
Confidence 47777999999999999999999999999 899999988777888999999998766543 367899888754
Q ss_pred hCCC----CCchhHHHHHHHHHHHHHH
Q 015605 153 YGGW----INRTIVKDFTAYADVCFRQ 175 (403)
Q Consensus 153 ~gg~----~~~~~~~~f~~ya~~~~~~ 175 (403)
.|- -|+.+..++.+|.+.++..
T Consensus 129 -pg~~~Rt~nepfk~~~~~~~~~iv~~ 154 (649)
T KOG0496|consen 129 -PGIVFRTDNEPFKAEMERWTTKIVPM 154 (649)
T ss_pred -CceEEecCChHHHHHHHHHHHHHHHH
Confidence 443 3667778888888888873
No 39
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=92.55 E-value=0.21 Score=47.38 Aligned_cols=27 Identities=22% Similarity=0.540 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHcCCCCEEEecCCCC
Q 015605 372 PLGLQRVLEHFKQLYGNPPMYIHENGSL 399 (403)
Q Consensus 372 P~GL~~~L~~v~~rY~~~PI~ITENG~~ 399 (403)
+.++...|+.++++|+ +||.|||-|+.
T Consensus 150 ~~~~~~~i~~~~~~~~-kPIWITEf~~~ 176 (239)
T PF11790_consen 150 ADDFKDYIDDLHNRYG-KPIWITEFGCW 176 (239)
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEeeccc
Confidence 3588899999999997 99999999974
No 40
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=92.48 E-value=0.38 Score=55.03 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=63.6
Q ss_pred cccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec---cCCCcHHHHhhhC
Q 015605 78 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---HFDLPQALEDEYG 154 (403)
Q Consensus 78 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---h~~~P~~l~~~~g 154 (403)
....+++||++||++|+|++|+| -.|. + ..+.+.|=+.||-++--.. |.-.|. ..
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~-----~-------p~fydlcDe~GilV~dE~~~e~hg~~~~---~~-- 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPN-----H-------PLWYELCDRYGLYVVDEANIETHGMVPM---NR-- 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCC-----C-------HHHHHHHHHcCCEEEEecCccccCCccc---cC--
Confidence 34568999999999999999995 2343 1 2446778889998776542 211110 00
Q ss_pred CCCCchhHHHHHHHHHHHHHHhCCC--cceEEEeccCc
Q 015605 155 GWINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (403)
Q Consensus 155 g~~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~ 190 (403)
...+++..+.+.+=++.+++|.+++ |-.|..-||+.
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1124566677777788899999886 89999999975
No 41
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=92.19 E-value=0.28 Score=49.52 Aligned_cols=101 Identities=17% Similarity=0.279 Sum_probs=73.9
Q ss_pred HHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCc--hhHHHHH
Q 015605 89 MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINR--TIVKDFT 166 (403)
Q Consensus 89 ~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~--~~~~~f~ 166 (403)
-+|+|++-+|.---|.-++.+ =-++ +.++++++|.+.+.|+.-+.+-.||+.+.-...+|.+=..+ ...+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 368899999988888833322 2245 67899999999999955555666887776554434443322 4689999
Q ss_pred HHHHHHHHHhCCC-cceE--EEeccCccccc
Q 015605 167 AYADVCFRQFGDR-VSYW--TTVNEPNAFAN 194 (403)
Q Consensus 167 ~ya~~~~~~~~~~-v~~w--~t~NEp~~~~~ 194 (403)
.|++.|+.++|-+ |.-| ..+||||..+-
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ad 119 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLLAD 119 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCcccc
Confidence 9999999999954 5555 79999998753
No 42
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=91.68 E-value=0.069 Score=54.69 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=81.9
Q ss_pred CcHHHHHHHHHcCCCceeecccC-cccccCCCCCCChHh-HHHHHHHHHHHHHcCCcceEeec----cCCCcHHHHhhhC
Q 015605 81 KYKEDVKLMADTGLDAYRFSISW-SRLIPNGRGPVNPKG-LQYYNNLINELISYGIQPHVTLH----HFDLPQALEDEYG 154 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W-~ri~P~g~g~~n~~~-~~~y~~~i~~l~~~gi~p~vtL~----h~~~P~~l~~~~g 154 (403)
..+.|++.++.+|++..|++|.- ..+ -+..|..|.+. +.+.+.+++.+...+|+.++||. |+.-=.|...=.|
T Consensus 27 ei~~dle~a~~vg~k~lR~fiLDgEdc-~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag 105 (587)
T COG3934 27 EIKADLEPAGFVGVKDLRLFILDGEDC-RDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAG 105 (587)
T ss_pred hhhcccccccCccceeEEEEEecCcch-hhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCC
Confidence 34578999999999999999644 333 33357788776 89999999999999999999986 3222222110001
Q ss_pred C------CCCchhHHHHHHHHHHHHHHhCCC--cceEEEeccCcc
Q 015605 155 G------WINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNA 191 (403)
Q Consensus 155 g------~~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~ 191 (403)
+ ..+++....|.+|++.+++.|+-. +.-|+.-|||-+
T Consensus 106 ~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 106 EQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 1 346777889999999999988864 788999999766
No 43
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=91.06 E-value=0.66 Score=53.09 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=62.8
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec---c-CCCcHHHHhhhC
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---H-FDLPQALEDEYG 154 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---h-~~~P~~l~~~~g 154 (403)
...+++|+++||++|+|++|+| ..|.. ..+.+.|=+.||-++--.. | |.... .+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~s-----HyP~~------------~~fydlcDe~GllV~dE~~~e~~g~~~~~----~~- 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTA-----HYPND------------PRFYELCDIYGLFVMAETDVESHGFANVG----DI- 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHCCCEEEECCcccccCccccc----cc-
Confidence 4678999999999999999996 24541 2456788889998776431 1 21110 00
Q ss_pred CC--CCchhHHHHHHHHHHHHHHhCCC--cceEEEeccCc
Q 015605 155 GW--INRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (403)
Q Consensus 155 g~--~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~ 190 (403)
.+ .+++..+.|.+=++.+++|.+++ |-.|..-||..
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 11 23445567777788999999886 89999999973
No 44
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=90.25 E-value=1.9 Score=42.04 Aligned_cols=87 Identities=22% Similarity=0.396 Sum_probs=62.4
Q ss_pred ccCcHHHHHHHHHcCCCceeec---ccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCC
Q 015605 79 YHKYKEDVKLMADTGLDAYRFS---ISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGG 155 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~s---i~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg 155 (403)
..||.+=-++++++|+|++-+. ..-..+.|+ -++...++-+.++.+||++.+++. |..|.-+ ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~~--------~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTPE--------YLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGSTT--------THHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCHH--------HHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 4678888899999999998754 122223222 367788999999999999999996 7788643 66
Q ss_pred -----CCCchhHHHHHHHHHHHHHHhCC
Q 015605 156 -----WINRTIVKDFTAYADVCFRQFGD 178 (403)
Q Consensus 156 -----~~~~~~~~~f~~ya~~~~~~~~~ 178 (403)
-++++++..|.+=++.+.++..|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 46889999999999999998865
No 45
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=87.74 E-value=2.1 Score=47.56 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=66.6
Q ss_pred CCcccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCC
Q 015605 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGG 155 (403)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg 155 (403)
+-.+..+.+|+++||++|+|++|.| =.|.. .++.+.|-+.||-++=-..+. -.|+
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~------------~~~ydLcDelGllV~~Ea~~~--------~~~~ 371 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS------------EEFYDLCDELGLLVIDEAMIE--------THGM 371 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC------------HHHHHHHHHhCcEEEEecchh--------hcCC
Confidence 3345569999999999999999998 34551 445667778899888655431 1244
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCC--cceEEEeccCc
Q 015605 156 WINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (403)
Q Consensus 156 ~~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~ 190 (403)
..+++..+...+=+++.++|-+++ |-.|..=||..
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 456666777777788889998874 99999999966
No 46
>smart00642 Aamy Alpha-amylase domain.
Probab=84.14 E-value=2 Score=38.36 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=43.9
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCccccc--CCCC-------CCCh--HhHHHHHHHHHHHHHcCCcceEeec
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIP--NGRG-------PVNP--KGLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P--~g~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
+....+-++.+++||++++-++--+..... ...| .+|+ -..+-++++|++|.++||++++.+-
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 445567778999999999998865554431 1011 1221 1345689999999999999999863
No 47
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=80.44 E-value=7.8 Score=38.16 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=49.6
Q ss_pred CcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCch
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRT 160 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~ 160 (403)
..+.|+.+||+||+|++|+= .|-|+ .| .++-...|.++||-+++.|. .|.---++-.-|.+-
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~----~n------Hd~CM~~~~~aGIYvi~Dl~---~p~~sI~r~~P~~sw- 115 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPS----KN------HDECMSAFADAGIYVILDLN---TPNGSINRSDPAPSW- 115 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TT----S--------HHHHHHHHHTT-EEEEES----BTTBS--TTS------
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCC----CC------HHHHHHHHHhCCCEEEEecC---CCCccccCCCCcCCC-
Confidence 56899999999999999973 34455 23 68888999999999999995 342111221111111
Q ss_pred hHHHHHHHHHHHHHHhCC--CcceEEEeccC
Q 015605 161 IVKDFTAYADVCFRQFGD--RVSYWTTVNEP 189 (403)
Q Consensus 161 ~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp 189 (403)
..+.|.+|.. +++.|.. .|-.+..=||-
T Consensus 116 ~~~l~~~~~~-vid~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 116 NTDLLDRYFA-VIDAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp -HHHHHHHHH-HHHHHTT-TTEEEEEEEESS
T ss_pred CHHHHHHHHH-HHHHhccCCceEEEEeccee
Confidence 1344555544 4455543 35555555553
No 48
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=80.07 E-value=12 Score=37.07 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=67.2
Q ss_pred CCCcCCCcccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHH
Q 015605 71 TGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALE 150 (403)
Q Consensus 71 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~ 150 (403)
.+-+|.=||+ |+.-+..++. |++.+|+. +|.+-. -+..+++++.++++|+-.=+...|-.++.-+.
T Consensus 73 iPlVADIHFd-~~lAl~a~~~-g~dkiRIN----------PGNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~ 138 (346)
T TIGR00612 73 VPLVADIHFD-YRLAALAMAK-GVAKVRIN----------PGNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLL 138 (346)
T ss_pred CCEEEeeCCC-cHHHHHHHHh-ccCeEEEC----------CCCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHH
Confidence 3445666776 6666666655 99999863 455432 35789999999999999999999999999999
Q ss_pred hhhCCCCCchhHHHHHHHHHHHH
Q 015605 151 DEYGGWINRTIVKDFTAYADVCF 173 (403)
Q Consensus 151 ~~~gg~~~~~~~~~f~~ya~~~~ 173 (403)
++||+-+.+..++--.++++.+-
T Consensus 139 ~kyg~~t~eamveSAl~~v~~le 161 (346)
T TIGR00612 139 EKYGDATAEAMVQSALEEAAILE 161 (346)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHH
Confidence 99876555566777777776654
No 49
>PLN02361 alpha-amylase
Probab=78.32 E-value=3.4 Score=42.30 Aligned_cols=64 Identities=17% Similarity=0.343 Sum_probs=47.0
Q ss_pred CcccCcHHHHHHHHHcCCCceeecccCcccccCCCCC-----CChH--hHHHHHHHHHHHHHcCCcceEee
Q 015605 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNPK--GLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 77 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~-----~n~~--~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
.+|....+-++.+++||++++-++-......+.|-.. +|.. ..+=++++|++|.++||++++.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4788899999999999999999886554443333111 1111 23458999999999999999874
No 50
>PLN00196 alpha-amylase; Provisional
Probab=75.89 E-value=3.7 Score=42.38 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=45.7
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCcccccCCCCC-----CCh---HhHHHHHHHHHHHHHcCCcceEee--ccC
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNP---KGLQYYNNLINELISYGIQPHVTL--HHF 143 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~-----~n~---~~~~~y~~~i~~l~~~gi~p~vtL--~h~ 143 (403)
|....+.++.+++||++++=++-......+.|-.. +|. -.-+=++++|+++.++||++|+.. .|-
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc
Confidence 45567889999999999999986555443333211 221 122348999999999999999974 453
No 51
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=72.65 E-value=5.5 Score=37.94 Aligned_cols=58 Identities=17% Similarity=0.320 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCceeecccCcccccCCCC-------CCCh--HhHHHHHHHHHHHHHcCCcceEeec
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRG-------PVNP--KGLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
.+-++.+|+||++++-++--+..=. ...| .+|+ -..+=++++|++|.++||++|+++-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4568899999999999886544211 1011 0111 2456689999999999999999874
No 52
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=69.93 E-value=5.4 Score=41.72 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=43.6
Q ss_pred CcccCcHHHHHHHHHcCCCceeecccCccccc---CCC--------------CCCChH--hHHHHHHHHHHHHHcCCcce
Q 015605 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIP---NGR--------------GPVNPK--GLQYYNNLINELISYGIQPH 137 (403)
Q Consensus 77 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P---~g~--------------g~~n~~--~~~~y~~~i~~l~~~gi~p~ 137 (403)
+.|.-..+-++.+++||++++=++-...-... .|- |.+|.. ..+=++++|++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 34555677789999999999988864433210 010 112211 24458999999999999999
Q ss_pred Eeec
Q 015605 138 VTLH 141 (403)
Q Consensus 138 vtL~ 141 (403)
+.+-
T Consensus 99 ~D~V 102 (479)
T PRK09441 99 ADVV 102 (479)
T ss_pred EEEC
Confidence 9853
No 53
>PRK05402 glycogen branching enzyme; Provisional
Probab=69.58 E-value=17 Score=40.22 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=59.3
Q ss_pred ccCcHHHH-HHHHHcCCCceeecccCc---------------ccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEee--
Q 015605 79 YHKYKEDV-KLMADTGLDAYRFSISWS---------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-- 140 (403)
Q Consensus 79 y~~~~eDi-~l~~~lG~~~~R~si~W~---------------ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-- 140 (403)
|.-..+.+ +.+|+||++++=+.--.. .|.|. -|. .+=++++|++|.++||++|+.+
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~-~Gt-----~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSR-FGT-----PDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcc-cCC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 33344553 788999999997664221 12222 232 3458999999999999999984
Q ss_pred ccCCCc-----------HHHHh-----hhCC-------CCCchhHHHHHHHHHHHHHHhC
Q 015605 141 HHFDLP-----------QALED-----EYGG-------WINRTIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 141 ~h~~~P-----------~~l~~-----~~gg-------~~~~~~~~~f~~ya~~~~~~~~ 177 (403)
.|+... .+... .+.. +.++++.+.+.+-++.-+++||
T Consensus 338 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 338 AHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 365321 11110 0112 3467888888888888888886
No 54
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=69.57 E-value=17 Score=38.69 Aligned_cols=92 Identities=17% Similarity=0.280 Sum_probs=58.8
Q ss_pred ccCcHHHHHHHHHcCCCceeeccc--------C-------cccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec--
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSIS--------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-- 141 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~--------W-------~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-- 141 (403)
+.-..+-++.+|+||++++-+.-- | -.+.|. -|. .+=++++|++|.++||++|+.+-
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~-~G~-----~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA-YGG-----PDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc-cCC-----HHHHHHHHHHHHHCCCEEEEEEccC
Confidence 444566789999999999976521 2 112222 232 34589999999999999999853
Q ss_pred cCCC---------cHHHHhh-hCCC------CCc---hhHHHHHHHHHHHHHHhC
Q 015605 142 HFDL---------PQALEDE-YGGW------INR---TIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 142 h~~~---------P~~l~~~-~gg~------~~~---~~~~~f~~ya~~~~~~~~ 177 (403)
|... | |+... ..+| .++ ++.+.+.+-++.-+++||
T Consensus 184 H~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 184 HFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 5431 2 33211 1233 244 667777887777777776
No 55
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=69.22 E-value=16 Score=38.12 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=42.0
Q ss_pred cccCcHHH-----HHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCc
Q 015605 78 GYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (403)
Q Consensus 78 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P 146 (403)
.|..|.+| ++...+.|++.+|+..+-+.+ +-....++.+++.|++...++.+-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI-------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH-------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 46778888 899999999999999866653 235666788888888877777653334
No 56
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=68.25 E-value=20 Score=35.42 Aligned_cols=98 Identities=17% Similarity=0.328 Sum_probs=65.3
Q ss_pred cCcHHHHHHHHHcCCCceeecccC-------cccccCC---CCCC-ChHhHHHHHHHHHHHHHcCCcceEeec-------
Q 015605 80 HKYKEDVKLMADTGLDAYRFSISW-------SRLIPNG---RGPV-NPKGLQYYNNLINELISYGIQPHVTLH------- 141 (403)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W-------~ri~P~g---~g~~-n~~~~~~y~~~i~~l~~~gi~p~vtL~------- 141 (403)
...++=++.++++|+|++=+.+.+ |.++|.. .|.. ...+.+.+..+|+++.++||+...-+-
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 345677899999999998776654 3344421 1111 112577899999999999999875441
Q ss_pred --c--CCCcHHHHhh-------h----CC--CC---CchhHHHHHHHHHHHHHHhC
Q 015605 142 --H--FDLPQALEDE-------Y----GG--WI---NRTIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 142 --h--~~~P~~l~~~-------~----gg--~~---~~~~~~~f~~ya~~~~~~~~ 177 (403)
| -..|.|+..+ + |+ |+ +|++.+...+-++.++++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1 1346665421 1 22 44 46888899999999999995
No 57
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=67.55 E-value=15 Score=35.57 Aligned_cols=84 Identities=12% Similarity=0.042 Sum_probs=62.9
Q ss_pred CcHHHHHHHHHcCCCceeecccCcccccCC-CCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCc
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINR 159 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~ 159 (403)
+-+.|++.+++.|++.+++.++=|...-.- -+.--++.++...++++.+++.|+++.+++-+|+.|. +
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r 143 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------R 143 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------c
Confidence 346799999999999999998666543220 2333467899999999999999999999998776553 1
Q ss_pred hhHHHHHHHHHHHHHH
Q 015605 160 TIVKDFTAYADVCFRQ 175 (403)
Q Consensus 160 ~~~~~f~~ya~~~~~~ 175 (403)
..++.+.++++.+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~ 159 (280)
T cd07945 144 DSPDYVFQLVDFLSDL 159 (280)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 2256778888877653
No 58
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=67.28 E-value=18 Score=38.99 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=36.4
Q ss_pred cccCcHHH-----HHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeecc
Q 015605 78 GYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (403)
Q Consensus 78 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h 142 (403)
.|.+|.+| ++..++.|++.+|+....+.+ +-....|+.++++|....+++.+
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 46777776 999999999999999755543 23455666667777765555543
No 59
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=67.09 E-value=23 Score=34.68 Aligned_cols=106 Identities=19% Similarity=0.289 Sum_probs=71.9
Q ss_pred cHHHHHHHHHcCC--CceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccC---CCcHHHH------
Q 015605 82 YKEDVKLMADTGL--DAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALE------ 150 (403)
Q Consensus 82 ~~eDi~l~~~lG~--~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l~------ 150 (403)
..+-++.+++.|+ +++=+.+.|..-. |.=.+|++.+---.+++++|+++|+++++.+.-+ +.+..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 3556778888885 5777777786432 2224566666667899999999999998876532 1111111
Q ss_pred ---hhhC----------C------CCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCc
Q 015605 151 ---DEYG----------G------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (403)
Q Consensus 151 ---~~~g----------g------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 190 (403)
++.| | ++||++.+.|.+..+.+....| ---+|.=+|||.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~ 167 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYG-IDSFKFDAGEAS 167 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhC-CcEEEeCCCCcc
Confidence 0001 1 6789999999999999887776 244568899997
No 60
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=66.24 E-value=14 Score=37.16 Aligned_cols=94 Identities=17% Similarity=0.276 Sum_probs=58.1
Q ss_pred cHHHHHHHHHcCCCceeecccCcccccCC---CCCCChHhHHHHHHHHHHHHHcCCcce-EeeccCCCcHHHHhhhCCCC
Q 015605 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWI 157 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g---~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~ 157 (403)
=+|.++.++++|++ |+||.-..+-++- -|... ..+-..+.|+.+++.|+..+ +.|. +++|.
T Consensus 98 t~e~l~~l~~~G~~--rvsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg---------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVN--RLSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN---------- 162 (374)
T ss_pred CHHHHHHHHHcCCC--EEEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC----------
Confidence 36889999999999 5555444443331 13221 24567889999999999744 4443 55653
Q ss_pred CchhHHHHHHHHHHHHHHhCCCcceEEEeccCccc
Q 015605 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (403)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 192 (403)
++.+.|.+-.+.+.+.=-++|..+...-+|+..
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~ 195 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTP 195 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCH
Confidence 235666666666655333566666555577754
No 61
>PRK12313 glycogen branching enzyme; Provisional
Probab=65.44 E-value=23 Score=38.48 Aligned_cols=93 Identities=15% Similarity=0.290 Sum_probs=60.0
Q ss_pred ccCcHHH-HHHHHHcCCCceeeccc--------C-------cccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEee--
Q 015605 79 YHKYKED-VKLMADTGLDAYRFSIS--------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-- 140 (403)
Q Consensus 79 y~~~~eD-i~l~~~lG~~~~R~si~--------W-------~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-- 140 (403)
|.-..+. ++.+|+||++++=+.=- | -.|.|. -|. .+=++++|++|.++||++|+.+
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~-~Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSR-YGT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCC-CCC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 4445567 49999999999986532 2 112222 233 3448999999999999999984
Q ss_pred ccCCCcH----HHH--------h---h-hCCC-------CCchhHHHHHHHHHHHHHHhC
Q 015605 141 HHFDLPQ----ALE--------D---E-YGGW-------INRTIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 141 ~h~~~P~----~l~--------~---~-~gg~-------~~~~~~~~f~~ya~~~~~~~~ 177 (403)
.|+.... ++. + . +..| .++++.+.+.+-++.-+++||
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4653211 110 0 0 0123 367888888888888888886
No 62
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=64.89 E-value=31 Score=33.67 Aligned_cols=106 Identities=15% Similarity=0.196 Sum_probs=68.4
Q ss_pred cHHHHHHHHHcC--CCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccC---CCcHHHHhh----
Q 015605 82 YKEDVKLMADTG--LDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDE---- 152 (403)
Q Consensus 82 ~~eDi~l~~~lG--~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l~~~---- 152 (403)
.++-++.+++.| ++++=+.+.|.+-.-.+.=.+|++.+---+++|++|+++|+++++.+.-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 466788889999 66677888888532111224566666667899999999999988876532 223221110
Q ss_pred ---------h--------CC---CCCchhHHHHHHHHHHHHHHhCCCcc-eEEEeccCc
Q 015605 153 ---------Y--------GG---WINRTIVKDFTAYADVCFRQFGDRVS-YWTTVNEPN 190 (403)
Q Consensus 153 ---------~--------gg---~~~~~~~~~f~~ya~~~~~~~~~~v~-~w~t~NEp~ 190 (403)
+ ++ ++||++.+.|.+..+.+.+ .| |+ +|.=+||+.
T Consensus 106 ~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 106 LVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred EEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 0 11 5788989888887776554 44 44 446688863
No 63
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=64.60 E-value=23 Score=30.33 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHHHHHHcCCCceeeccc--Ccc-cccCCCCC--CChHhHHHHHHHHHHHHHcCCcceEeecc
Q 015605 85 DVKLMADTGLDAYRFSIS--WSR-LIPNGRGP--VNPKGLQYYNNLINELISYGIQPHVTLHH 142 (403)
Q Consensus 85 Di~l~~~lG~~~~R~si~--W~r-i~P~g~g~--~n~~~~~~y~~~i~~l~~~gi~p~vtL~h 142 (403)
=++.+|++|+|++-+... +-- -.|...|. ...+ -+.+.++|++|+++||++++=+.+
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 368899999999999443 221 12332222 2222 478999999999999999987653
No 64
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.26 E-value=20 Score=37.31 Aligned_cols=112 Identities=19% Similarity=0.433 Sum_probs=71.2
Q ss_pred ccCcHHHHHHHHHcCCCceeec----ccCcccccC-C---------------------------CCCCCh----HhHHHH
Q 015605 79 YHKYKEDVKLMADTGLDAYRFS----ISWSRLIPN-G---------------------------RGPVNP----KGLQYY 122 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~s----i~W~ri~P~-g---------------------------~g~~n~----~~~~~y 122 (403)
|.+|+..|+-|+-.|+|..=.. +-|.+|+-. | .|...+ ..+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 7889999999999999976433 235554422 0 122211 122334
Q ss_pred HHHHHHHHHcCCcceEeeccCCCcHHHHhhh--------CCCC---------------CchhHHHHHHHHHHHHHHhCCC
Q 015605 123 NNLINELISYGIQPHVTLHHFDLPQALEDEY--------GGWI---------------NRTIVKDFTAYADVCFRQFGDR 179 (403)
Q Consensus 123 ~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~--------gg~~---------------~~~~~~~f~~ya~~~~~~~~~~ 179 (403)
+++|+++++-||+|++--+---.|..|..-+ +-|. +|-+++-=..|-+...+.||+-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999888777888876432 2231 2333444456667778889963
Q ss_pred cceE--EEeccCc
Q 015605 180 VSYW--TTVNEPN 190 (403)
Q Consensus 180 v~~w--~t~NEp~ 190 (403)
-..+ =||||..
T Consensus 237 tniy~~DpFNE~~ 249 (666)
T KOG2233|consen 237 TNIYSADPFNEIL 249 (666)
T ss_pred ccccccCcccccC
Confidence 2222 3888854
No 65
>PLN02784 alpha-amylase
Probab=64.14 E-value=12 Score=41.91 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=47.8
Q ss_pred CcccCcHHHHHHHHHcCCCceeecccCcccccCCCCC-----CChH--hHHHHHHHHHHHHHcCCcceEee
Q 015605 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNPK--GLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 77 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~-----~n~~--~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
.+|....+.++.+++||++++-++-.-....+.|-.. +|.. ..+=++.+|++|.++||++++.+
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5788899999999999999999887554444433211 1111 23458999999999999999984
No 66
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=63.72 E-value=21 Score=33.70 Aligned_cols=80 Identities=14% Similarity=0.030 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCceeecccCcccccCC-CCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchh
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~ 161 (403)
++|++.+++.|++.+|++++-+.+.=.- -+.=.+..++...+.++.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 8999999999999999999877421110 011123457788999999999999999999643332 233
Q ss_pred HHHHHHHHHHHHH
Q 015605 162 VKDFTAYADVCFR 174 (403)
Q Consensus 162 ~~~f~~ya~~~~~ 174 (403)
.+.+.++++.+.+
T Consensus 145 ~~~l~~~~~~~~~ 157 (265)
T cd03174 145 PEYVLEVAKALEE 157 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 5566677776654
No 67
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=62.62 E-value=3.9 Score=32.26 Aligned_cols=19 Identities=42% Similarity=0.767 Sum_probs=14.1
Q ss_pred HHHHhCC--CcceEEEecc-Cc
Q 015605 172 CFRQFGD--RVSYWTTVNE-PN 190 (403)
Q Consensus 172 ~~~~~~~--~v~~w~t~NE-p~ 190 (403)
|+++||+ +|.+|..+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4677775 7999999999 76
No 68
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=61.97 E-value=34 Score=33.52 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=52.2
Q ss_pred HHHHHcCCCceeeccc--CcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHH
Q 015605 87 KLMADTGLDAYRFSIS--WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKD 164 (403)
Q Consensus 87 ~l~~~lG~~~~R~si~--W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~ 164 (403)
+.+++.|++++-++.. -....|.-.|.............|..|+++|.+++|++-.+.-... -.+...++.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~~~ 91 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSADQ 91 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccHHH
Confidence 5677889998887642 2223332111111011234577899999999999999843322110 014467889
Q ss_pred HHHHHHHHHHHhC
Q 015605 165 FTAYADVCFRQFG 177 (403)
Q Consensus 165 f~~ya~~~~~~~~ 177 (403)
|++....+.++|+
T Consensus 92 ~~~a~~~~i~~y~ 104 (294)
T cd06543 92 LAAAYQKVIDAYG 104 (294)
T ss_pred HHHHHHHHHHHhC
Confidence 9888888999997
No 69
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=61.68 E-value=60 Score=32.35 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=63.7
Q ss_pred CCcCCCcccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHh
Q 015605 72 GDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED 151 (403)
Q Consensus 72 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~ 151 (403)
+-+|-=||+ |+==++ ..+.|+..||+ - +|.+-.+ +...++++.++++|+-.=+...|-.+.+-+.+
T Consensus 76 PLVaDiHf~-~rla~~-~~~~g~~k~RI-------N---PGNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ 141 (361)
T COG0821 76 PLVADIHFD-YRLALE-AAECGVDKVRI-------N---PGNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLE 141 (361)
T ss_pred CEEEEeecc-HHHHHH-hhhcCcceEEE-------C---CcccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHH
Confidence 334444666 443333 34557888875 2 4444322 27899999999999999999999999999999
Q ss_pred hhCCCCCchhHHHHHHHHHHHHH
Q 015605 152 EYGGWINRTIVKDFTAYADVCFR 174 (403)
Q Consensus 152 ~~gg~~~~~~~~~f~~ya~~~~~ 174 (403)
+||+-+.+..++--.++|+.+-+
T Consensus 142 ky~~pt~ealveSAl~~a~~~e~ 164 (361)
T COG0821 142 KYGGPTPEALVESALEHAELLEE 164 (361)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHH
Confidence 99887766667766677766543
No 70
>PRK09505 malS alpha-amylase; Reviewed
Probab=61.10 E-value=12 Score=41.06 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=43.0
Q ss_pred cHHHHHHHHHcCCCceeecccCcccc-----------cC-C-CC-------CCChH--hHHHHHHHHHHHHHcCCcceEe
Q 015605 82 YKEDVKLMADTGLDAYRFSISWSRLI-----------PN-G-RG-------PVNPK--GLQYYNNLINELISYGIQPHVT 139 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~-----------P~-g-~g-------~~n~~--~~~~y~~~i~~l~~~gi~p~vt 139 (403)
..+-++.+++||++++=++--...+. |. + .| .+|+. ..+=++++|+++.++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 55668899999999999885544431 10 0 01 12221 3456899999999999999998
Q ss_pred e--ccCC
Q 015605 140 L--HHFD 144 (403)
Q Consensus 140 L--~h~~ 144 (403)
+ .|..
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 5 4644
No 71
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=60.97 E-value=11 Score=40.03 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=41.7
Q ss_pred cccCcHHHHHHHHHcCCCceeecccCcccccCCCC-------CCCh--HhHHHHHHHHHHHHHcCCcceEeec
Q 015605 78 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRG-------PVNP--KGLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 78 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
.+.-..+-++.+++||++++=++--...-.-. .| .+|+ -..+-++++|++|.++||++|+.+-
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~-~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKD-NGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCC-CCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34445677899999999999776433321100 01 1111 1345689999999999999999854
No 72
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=60.61 E-value=26 Score=33.41 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCceeecccCcccccC-CCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchh
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~ 161 (403)
.+|++...+.|++.+|+.++.|.+.-. .-+.--+++++...+.++.+++.|+++.+++- + .+.. .
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~---------~--~~~~---~ 137 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE---------D--ASRA---D 137 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec---------c--CCCC---C
Confidence 789999999999999999988876311 02333457788999999999999998775552 1 2222 3
Q ss_pred HHHHHHHHHHHHHHhC
Q 015605 162 VKDFTAYADVCFRQFG 177 (403)
Q Consensus 162 ~~~f~~ya~~~~~~~~ 177 (403)
.+...+.++.+.+ .|
T Consensus 138 ~~~~~~~~~~~~~-~G 152 (259)
T cd07939 138 PDFLIEFAEVAQE-AG 152 (259)
T ss_pred HHHHHHHHHHHHH-CC
Confidence 5666777776654 44
No 73
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=60.34 E-value=33 Score=33.39 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=63.0
Q ss_pred CcHHHHHHHHHcCCCceeecccCcccccC-CCCCCChHhHHHHHHHHHHHHHcCCcceEeecc-CCCcHHHHhhhCCCCC
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHH-FDLPQALEDEYGGWIN 158 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h-~~~P~~l~~~~gg~~~ 158 (403)
+-.+|+++..+.|++.+|+.++=|...-. .-+.--++.++...+.|+.++++|+++..++.. |..| +.|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~- 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEV- 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCC-
Confidence 35899999999999999999866654211 123334577889999999999999999887763 4445 23333
Q ss_pred chhHHHHHHHHHHHHHH
Q 015605 159 RTIVKDFTAYADVCFRQ 175 (403)
Q Consensus 159 ~~~~~~f~~ya~~~~~~ 175 (403)
..+.+.++++.+.+.
T Consensus 153 --~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 --PPEAVADVAERLFAL 167 (287)
T ss_pred --CHHHHHHHHHHHHHc
Confidence 367888888888754
No 74
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=60.02 E-value=32 Score=33.02 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhH
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIV 162 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~ 162 (403)
.+|++...+.|++.+|+++..+ .++...++++.++++|+++.+.+.+-. + -..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~~~ 137 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----YSD 137 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----CCH
Confidence 5889999999999999987432 366789999999999999999886421 1 235
Q ss_pred HHHHHHHHHHHH
Q 015605 163 KDFTAYADVCFR 174 (403)
Q Consensus 163 ~~f~~ya~~~~~ 174 (403)
+.+.++++.+.+
T Consensus 138 ~~~~~~~~~~~~ 149 (266)
T cd07944 138 EELLELLELVNE 149 (266)
T ss_pred HHHHHHHHHHHh
Confidence 677788887755
No 75
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=59.53 E-value=26 Score=35.35 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=56.8
Q ss_pred cHHHHHHHHHcCCCceeecccCcccccCC-CCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCch
Q 015605 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRT 160 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~ 160 (403)
.++|++.+.+.|++.+|+.++-|.+.-.. -+.-.++.++...+.++.+++.|+++.+++-.. + +.
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda-----------~---r~ 138 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDA-----------T---RT 138 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec-----------C---CC
Confidence 58999999999999999998877664220 122335678889999999999999988777321 1 22
Q ss_pred hHHHHHHHHHHHHH
Q 015605 161 IVKDFTAYADVCFR 174 (403)
Q Consensus 161 ~~~~f~~ya~~~~~ 174 (403)
..+.+.++++.+.+
T Consensus 139 ~~~~l~~~~~~~~~ 152 (363)
T TIGR02090 139 DIDFLIKVFKRAEE 152 (363)
T ss_pred CHHHHHHHHHHHHh
Confidence 35566666666543
No 76
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=58.57 E-value=14 Score=35.49 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=46.7
Q ss_pred cHHHHHHHHHcCCCceeecccCcccccCC-CCCCChHhHHHHHHHHHHHHHcCCcceEeec
Q 015605 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
-.+|++...+.|++.+|+.++=|...-.. .+.=-++.++...+++..++++|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 37899999999999999988665532110 2222357799999999999999999998884
No 77
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=58.04 E-value=29 Score=34.83 Aligned_cols=85 Identities=11% Similarity=-0.010 Sum_probs=62.7
Q ss_pred cHHHHHHHHHcCCCceeecccCcccccC-CCCCCChHhHHHHHHHHHHHHHcCCcceEeecc-CCCcHHHHhhhCCCCCc
Q 015605 82 YKEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHH-FDLPQALEDEYGGWINR 159 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h-~~~P~~l~~~~gg~~~~ 159 (403)
-.+|++...+.|++.+.+.++=|...-. .-+.--++.++.+.++|+.++++|+++.+++.. |..|. .+-.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~-- 194 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPV-- 194 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCC--
Confidence 5899999999999999999876665422 123345788999999999999999999877753 44441 2322
Q ss_pred hhHHHHHHHHHHHHHH
Q 015605 160 TIVKDFTAYADVCFRQ 175 (403)
Q Consensus 160 ~~~~~f~~ya~~~~~~ 175 (403)
.++.+.++++.+.+.
T Consensus 195 -~~~~l~~~~~~~~~~ 209 (347)
T PLN02746 195 -PPSKVAYVAKELYDM 209 (347)
T ss_pred -CHHHHHHHHHHHHHc
Confidence 367788888887653
No 78
>PRK10785 maltodextrin glucosidase; Provisional
Probab=57.71 E-value=16 Score=39.51 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=39.1
Q ss_pred cHHHHHHHHHcCCCceeecccCc-------------ccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec
Q 015605 82 YKEDVKLMADTGLDAYRFSISWS-------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~-------------ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
..+-++.+++||++++=++--.. +|.|. -| ..+=++++|+++.++||++|+.+-
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~-~G-----t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQ-LG-----GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 45668999999999998874221 22222 12 234589999999999999999854
No 79
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=57.49 E-value=41 Score=33.70 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=44.2
Q ss_pred HHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEee
Q 015605 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
++.++++|.+++-+-+-|. |+.+..+|..-+++..++.++|.+.||.-++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5779999999999999887 553334678889999999999999999988865
No 80
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=57.40 E-value=46 Score=36.07 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=59.7
Q ss_pred ccCcHHHH-HHHHHcCCCceeec-ccCcc--------------cccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec-
Q 015605 79 YHKYKEDV-KLMADTGLDAYRFS-ISWSR--------------LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH- 141 (403)
Q Consensus 79 y~~~~eDi-~l~~~lG~~~~R~s-i~W~r--------------i~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~- 141 (403)
|.-..+.+ +.+|+||++++=+. |.... +.|. -|. .+=++++|++|.++||++|+.+-
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~-~Gt-----~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSR-FGT-----PDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccc-cCC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 33344564 88999999999884 43321 1111 122 33589999999999999999854
Q ss_pred -cCCC-----------cHHHHh-----hhCCC-------CCchhHHHHHHHHHHHHHHhC
Q 015605 142 -HFDL-----------PQALED-----EYGGW-------INRTIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 142 -h~~~-----------P~~l~~-----~~gg~-------~~~~~~~~f~~ya~~~~~~~~ 177 (403)
|... |.+... .+..| .++++.+.+.+-++.-+++|+
T Consensus 229 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 229 GHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 5421 111110 00112 457888999999999999987
No 81
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=56.59 E-value=25 Score=33.85 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=40.4
Q ss_pred cHHHHHHHHHcCCCceeecccCcc-cccCCCCCCChHhHHHHHHHHHHHHHcCCcceEee
Q 015605 82 YKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~r-i~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
-+|.++.|+++|++.+-++++-+. +.+.-.+.- .++.+.+.++.++++||...+.+
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 389999999999999999998221 333311222 36678899999999999855443
No 82
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=56.53 E-value=41 Score=35.00 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=42.3
Q ss_pred cccCc-----HHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCc
Q 015605 78 GYHKY-----KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (403)
Q Consensus 78 ~y~~~-----~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P 146 (403)
.|.+| ++|++...+.|++.+|+.++-+.+. -..+.|+.++++|+++.+++..-+-|
T Consensus 89 G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~-------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 89 GYRNYADDVVESFVQKSVENGIDIIRIFDALNDVR-------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHH-------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 45555 5567999999999999998766552 25668899999999888877765545
No 83
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=56.37 E-value=37 Score=35.57 Aligned_cols=56 Identities=20% Similarity=0.417 Sum_probs=41.4
Q ss_pred cccCcHHH-----HHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCc
Q 015605 78 GYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (403)
Q Consensus 78 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P 146 (403)
.|..|.+| +++.++-|++.+|+.-.... ++-....|+.+++.|.+..+++.+=+.|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd-------------~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDALND-------------PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccCCC-------------HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 48888999 89999999999998653221 3345667777788888777777765555
No 84
>PRK09810 entericidin A; Provisional
Probab=56.24 E-value=13 Score=25.34 Aligned_cols=22 Identities=41% Similarity=0.416 Sum_probs=15.8
Q ss_pred ChhHHHHHHHHHHHHHhhhhcc
Q 015605 1 MMLRLSFLLMYLLNLATSALTA 22 (403)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (403)
||-|++++++.++.+...|+|.
T Consensus 1 mMkk~~~l~~~~~~~L~aCNTv 22 (41)
T PRK09810 1 MMKRLIVLVLLASTLLTGCNTA 22 (41)
T ss_pred ChHHHHHHHHHHHHHHhhhhhc
Confidence 7888888776655556667766
No 85
>PRK03705 glycogen debranching enzyme; Provisional
Probab=55.86 E-value=22 Score=38.94 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=37.6
Q ss_pred HHHHHHcCCCceeeccc-----------------C-------cccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec
Q 015605 86 VKLMADTGLDAYRFSIS-----------------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 86 i~l~~~lG~~~~R~si~-----------------W-------~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
++.+|+||++++-+.=- | -.++|. -|.-....++=+++||++|.++||++|+.+-
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~-ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPA-YASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccc-cCCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 89999999999976421 1 122222 1221112456799999999999999999853
No 86
>PRK14705 glycogen branching enzyme; Provisional
Probab=55.18 E-value=48 Score=38.89 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=58.4
Q ss_pred ccCcHHH-HHHHHHcCCCceeecc--------cCc-------ccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec-
Q 015605 79 YHKYKED-VKLMADTGLDAYRFSI--------SWS-------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH- 141 (403)
Q Consensus 79 y~~~~eD-i~l~~~lG~~~~R~si--------~W~-------ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~- 141 (403)
|.-..+. ++.+|+||++++=+.= +|- .+.|. -|. .+=++.+|++|.++||.+|+.+-
T Consensus 764 ~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~r-yGt-----~~dfk~lVd~~H~~GI~VILD~V~ 837 (1224)
T PRK14705 764 YRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSR-FGH-----PDEFRFLVDSLHQAGIGVLLDWVP 837 (1224)
T ss_pred hHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcc-cCC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 3333345 6899999999997542 231 11111 132 33489999999999999999854
Q ss_pred -cCCCcHHHHhhh----------------CC-------CCCchhHHHHHHHHHHHHHHhC
Q 015605 142 -HFDLPQALEDEY----------------GG-------WINRTIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 142 -h~~~P~~l~~~~----------------gg-------~~~~~~~~~f~~ya~~~~~~~~ 177 (403)
|+..=.|....+ .. +.++++.+.+.+=+..-+++|+
T Consensus 838 nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 838 AHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred ccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 652211211111 11 3456778888888888899987
No 87
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=54.89 E-value=15 Score=39.01 Aligned_cols=62 Identities=13% Similarity=0.277 Sum_probs=39.9
Q ss_pred cCcHHHHHHHHHcCCCceeecccCcccc-cCCCC-----CCChH--hHHHHHHHHHHHHHcCCcceEeec
Q 015605 80 HKYKEDVKLMADTGLDAYRFSISWSRLI-PNGRG-----PVNPK--GLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~-P~g~g-----~~n~~--~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
.-..+-++.+++||++++=++--.+.-. ..|-. .+|+. ..+=++++|+++.++||++|+.+-
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3345668999999999998764322110 00000 12221 235689999999999999999753
No 88
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=54.44 E-value=62 Score=31.21 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=50.5
Q ss_pred cHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchh
Q 015605 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~ 161 (403)
-++|++...+.|++.+|+++..+. ++.-.+.++.++++|+++.+.+.--+ + ++..
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~---~~~~ 147 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAICYTG---------S---PVHT 147 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEEEecC---------C---CCCC
Confidence 478999999999999999875554 45678899999999999887663100 1 2233
Q ss_pred HHHHHHHHHHHHHH
Q 015605 162 VKDFTAYADVCFRQ 175 (403)
Q Consensus 162 ~~~f~~ya~~~~~~ 175 (403)
.+.+.++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~ 161 (275)
T cd07937 148 LEYYVKLAKELEDM 161 (275)
T ss_pred HHHHHHHHHHHHHc
Confidence 56777777777654
No 89
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=53.81 E-value=58 Score=32.44 Aligned_cols=98 Identities=12% Similarity=0.196 Sum_probs=55.7
Q ss_pred CCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeecc-CCCcHHHHh--hhCCCCCchhHHHHHHHHH
Q 015605 94 LDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH-FDLPQALED--EYGGWINRTIVKDFTAYAD 170 (403)
Q Consensus 94 ~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h-~~~P~~l~~--~~gg~~~~~~~~~f~~ya~ 170 (403)
++++=+.|.|..-. +.=.+|++.+---++++++|++.|++.++.+.- ...-..... .+-.|+||++.+.|.+..+
T Consensus 40 ~D~i~lDidy~~~~--~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~ 117 (332)
T cd06601 40 LDGLHVDVDFQDNY--RTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYK 117 (332)
T ss_pred CceEEEcCchhcCC--CceeecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHH
Confidence 34555555554211 112234433333478999999999998776541 110000000 0123788998888877665
Q ss_pred HHHHHhCCCcceEEEeccCcccccc
Q 015605 171 VCFRQFGDRVSYWTTVNEPNAFANL 195 (403)
Q Consensus 171 ~~~~~~~~~v~~w~t~NEp~~~~~~ 195 (403)
.+.+ .| -.-+|.=+|||.++...
T Consensus 118 ~l~~-~G-v~~~W~DmnEp~~~~~~ 140 (332)
T cd06601 118 YLFD-IG-LEFVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHh-CC-CceeecCCCCcccccCC
Confidence 5443 33 23478999999987553
No 90
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=53.72 E-value=24 Score=38.79 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=39.6
Q ss_pred HHHHHHcCCCceee----cccCcccccC-CC---------------CC--CCh---HhHHHHHHHHHHHHHcCCcceEee
Q 015605 86 VKLMADTGLDAYRF----SISWSRLIPN-GR---------------GP--VNP---KGLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 86 i~l~~~lG~~~~R~----si~W~ri~P~-g~---------------g~--~n~---~~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
|+.+|+||++++.+ ++.+.+...+ |. |. .+. ..++=+++||++|.++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999983 4444444322 10 01 122 357789999999999999999874
No 91
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=52.80 E-value=1.1e+02 Score=30.58 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
.+|++...+.|++.+|+....+.. +--.+.|+.+++.|++..+.+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 689999999999999998754443 1247889999999999988874
No 92
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=52.44 E-value=64 Score=31.99 Aligned_cols=58 Identities=17% Similarity=0.305 Sum_probs=49.7
Q ss_pred HHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCc
Q 015605 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (403)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P 146 (403)
.+.+|++|.+++-|=+-|. |+++..+|..-.++-+++.++|++.+|-=++-+.-++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 6889999999999988877 675667899999999999999999999998888665443
No 93
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=52.37 E-value=52 Score=31.76 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=61.1
Q ss_pred cHHHHHHHHHcCCCceeecccCcccccC-CCCCCChHhHHHHHHHHHHHHHcCCcceEeecc-CCCcHHHHhhhCCCCCc
Q 015605 82 YKEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHH-FDLPQALEDEYGGWINR 159 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h-~~~P~~l~~~~gg~~~~ 159 (403)
-++|++...+.|++.+++.++=|...-. .-+.--++.++...+.++.++++|+++.+++.. |+.| +++-.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~------~~~~~-- 146 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP------YEGEV-- 146 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC------CCCCC--
Confidence 3789999999999999999876654211 022223677899999999999999999988863 5555 12322
Q ss_pred hhHHHHHHHHHHHHH
Q 015605 160 TIVKDFTAYADVCFR 174 (403)
Q Consensus 160 ~~~~~f~~ya~~~~~ 174 (403)
..+.+.++++.+.+
T Consensus 147 -~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 -PPERVAEVAERLLD 160 (274)
T ss_pred -CHHHHHHHHHHHHH
Confidence 46777888888765
No 94
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=51.13 E-value=65 Score=32.40 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=61.5
Q ss_pred CCcCCCcccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHh
Q 015605 72 GDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED 151 (403)
Q Consensus 72 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~ 151 (403)
+-+|.=||+. +--++. .+.|++.+|+ - +|.+-.. -+..+++++.++++|+..=+...|-.++.-+.+
T Consensus 82 PlvADIHFd~-~lAl~a-~~~G~~~iRI-------N---PGNig~~-~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~ 148 (360)
T PRK00366 82 PLVADIHFDY-RLALAA-AEAGADALRI-------N---PGNIGKR-DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLE 148 (360)
T ss_pred CEEEecCCCH-HHHHHH-HHhCCCEEEE-------C---CCCCCch-HHHHHHHHHHHHHCCCCEEEecCCccChHHHHH
Confidence 3345445442 322222 3569999954 3 4555210 246899999999999999999999999999999
Q ss_pred hhCCCCCchhHHHHHHHHHHHH
Q 015605 152 EYGGWINRTIVKDFTAYADVCF 173 (403)
Q Consensus 152 ~~gg~~~~~~~~~f~~ya~~~~ 173 (403)
+||+-+.+..++--.++++.+-
T Consensus 149 ~yg~~t~eamveSAl~~~~~le 170 (360)
T PRK00366 149 KYGEPTPEALVESALRHAKILE 170 (360)
T ss_pred HcCCCCHHHHHHHHHHHHHHHH
Confidence 9866455566777777776654
No 95
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.13 E-value=69 Score=31.84 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=63.4
Q ss_pred HHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHH
Q 015605 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKD 164 (403)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~ 164 (403)
+.+.+|++|.+++-|=+-|. |+++-.+|..-.++-+++.++|++.+|-=++-+.-+|.+. .++ .+++....
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~--~d~----~~~eyak~ 182 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERI--SDN----NSAAYAKL 182 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcc--ccc----ccHHHHhh
Confidence 57889999999999988877 6655678999999999999999999999999887654332 111 22333222
Q ss_pred HHHHHHHHHHHhCC---CcceE
Q 015605 165 FTAYADVCFRQFGD---RVSYW 183 (403)
Q Consensus 165 f~~ya~~~~~~~~~---~v~~w 183 (403)
.-+.+-..++.|++ .|+.|
T Consensus 183 kP~~V~~amkefs~~~~gvDVl 204 (329)
T PRK04161 183 KPHKVNGAMKVFSDKRFGVDVL 204 (329)
T ss_pred ChHHHHHHHHHhccCCCCCcEE
Confidence 22334445566664 46666
No 96
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=51.06 E-value=63 Score=32.21 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCC--CceeecccCcccccCCCCCCChHhHHHH--HHHHHHHHHcCCcceEeeccCCCc--------HHHH
Q 015605 83 KEDVKLMADTGL--DAYRFSISWSRLIPNGRGPVNPKGLQYY--NNLINELISYGIQPHVTLHHFDLP--------QALE 150 (403)
Q Consensus 83 ~eDi~l~~~lG~--~~~R~si~W~ri~P~g~g~~n~~~~~~y--~~~i~~l~~~gi~p~vtL~h~~~P--------~~l~ 150 (403)
++-++.+++.|+ +++=+.+.|..-. +.=.+|++.+--- +++|++|+++|++.++.+.-+-.+ .+-+
T Consensus 27 ~~~~~~~r~~~iP~d~i~lD~~~~~~~--~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e 104 (339)
T cd06602 27 KEVVENMRAAGIPLDVQWNDIDYMDRR--RDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDR 104 (339)
T ss_pred HHHHHHHHHhCCCcceEEECcccccCc--cceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHH
Confidence 344455555444 3344444554221 1112333333334 889999999999988877644222 2211
Q ss_pred h-h------------h--------C---CCCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCcc
Q 015605 151 D-E------------Y--------G---GWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (403)
Q Consensus 151 ~-~------------~--------g---g~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 191 (403)
. + + + .++||+.++.|.+..+.+...+| -.-+|.=+|||..
T Consensus 105 ~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~Ep~~ 168 (339)
T cd06602 105 GLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVP-FDGLWIDMNEPSN 168 (339)
T ss_pred HHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCC-CcEEEecCCCCch
Confidence 1 0 0 1 26789999999888887776665 2456788999974
No 97
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=50.92 E-value=50 Score=35.62 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCc----HHHHhh------
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP----QALEDE------ 152 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P----~~l~~~------ 152 (403)
++|++...+.|++.+|+..+.+.+ +-....++.++++|++..+++..-+.| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 445899999999999999876654 235667788888888888877655555 221110
Q ss_pred ----------hCCCCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCcc
Q 015605 153 ----------YGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (403)
Q Consensus 153 ----------~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 191 (403)
-.|...|. ...+..+.+.++++ .--...+-|-..+
T Consensus 161 ~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 161 MGVDSICIKDMAGILTPK---AAYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred cCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 03555554 45555666666665 2234566666554
No 98
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=50.89 E-value=36 Score=36.37 Aligned_cols=62 Identities=18% Similarity=0.362 Sum_probs=42.4
Q ss_pred cccCcHHHHHHHHHcCCCceeecccCcccccCC-CC-------CCCh--HhHHHHHHHHHHHHHcCCcceEeec
Q 015605 78 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNG-RG-------PVNP--KGLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 78 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
-+.-..+.++.+++||++++=++--+.. |.. .| .+|+ -..+-++++|+++.++||++|+.+-
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3455668899999999999988654321 210 11 0111 1245689999999999999999854
No 99
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=49.55 E-value=43 Score=31.33 Aligned_cols=79 Identities=16% Similarity=0.374 Sum_probs=52.4
Q ss_pred CCCcccCcHHHHHHHHHcCCCceee----------------------cccCcccccCCCCCCChHhHHHHHHHHHHHHHc
Q 015605 75 ACDGYHKYKEDVKLMADTGLDAYRF----------------------SISWSRLIPNGRGPVNPKGLQYYNNLINELISY 132 (403)
Q Consensus 75 a~d~y~~~~eDi~l~~~lG~~~~R~----------------------si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~ 132 (403)
+.+---.-+.-|+++++||.+++.| ++ | +||. |-+| ++.+.+++.-+++.
T Consensus 130 ~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPT--GGId---l~Nf~~I~~i~lda 201 (236)
T TIGR03581 130 GKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPT--GGID---LDNFEEIVQIALDA 201 (236)
T ss_pred CCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCC--CCcc---HHhHHHHHHHHHHc
Confidence 3344455677899999999999875 33 3 5777 5678 77889999999999
Q ss_pred CCcceEeeccCCCcHHHHhhhCCCCCchhHHHH
Q 015605 133 GIQPHVTLHHFDLPQALEDEYGGWINRTIVKDF 165 (403)
Q Consensus 133 gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f 165 (403)
|++-++ .|. +- ..-|+-.|-++++-+...
T Consensus 202 Gv~kvi--PHI-Ys-siIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 202 GVEKVI--PHV-YS-SIIDKETGNTRVEDVKQL 230 (236)
T ss_pred CCCeec--ccc-ce-eccccccCCCCHHHHHHH
Confidence 998663 231 01 112333566666655443
No 100
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=48.40 E-value=37 Score=31.86 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=41.2
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCcccccCC--CCCCChHhHHHHHHHHHHHHHcCCcceEee-ccCCCc
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNG--RGPVNPKGLQYYNNLINELISYGIQPHVTL-HHFDLP 146 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g--~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~h~~~P 146 (403)
-+.+++=++.+++||.+.+|+...+ . |.. ..+..+..++..+++.+.+.+.||+..+=- .|++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGK--R-PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 3456677899999999999864332 1 221 011223445667888888899999877743 444444
No 101
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=48.36 E-value=88 Score=32.13 Aligned_cols=88 Identities=15% Similarity=0.343 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCCceeecc--cCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcce-EeeccCCCcHH--HHhhhCCCC
Q 015605 83 KEDVKLMADTGLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQA--LEDEYGGWI 157 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si--~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~--l~~~~gg~~ 157 (403)
.+|++.+.++.--.-|+++ .|.. +|.+.++ +.++++||..- +...-|..|+- -.=++|.+.
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd~--------vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLt 138 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWDK--------ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLS 138 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCCc--------CCHHHHH------HHHHHcCCccceeccccccCcccccccccccccC
Confidence 6788888888776667665 7822 3654444 88999999988 66665766732 111347777
Q ss_pred Cc--hhHHHHHHHHHHHH---HHhCCC-cceEE
Q 015605 158 NR--TIVKDFTAYADVCF---RQFGDR-VSYWT 184 (403)
Q Consensus 158 ~~--~~~~~f~~ya~~~~---~~~~~~-v~~w~ 184 (403)
|| ++.+...+.++.|. +.+|.+ |..|+
T Consensus 139 nPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 139 HTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 65 56677777777765 667764 55554
No 102
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=48.12 E-value=58 Score=31.04 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhH
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIV 162 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~ 162 (403)
.+|++..++.|++.+|+..+.+.+ .-..+.++.+++.|+++.+++-. .+..+ +
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~-------------~~~~~~i~~ak~~G~~v~~~~~~-----------~~~~~---~ 140 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA-------------DVSEQHIGAARKLGMDVVGFLMM-----------SHMAS---P 140 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH-------------HHHHHHHHHHHHCCCeEEEEEEe-----------ccCCC---H
Confidence 699999999999999998876654 23577899999999999998843 12233 3
Q ss_pred HHHHHHHHHHHH
Q 015605 163 KDFTAYADVCFR 174 (403)
Q Consensus 163 ~~f~~ya~~~~~ 174 (403)
+.+.+.++.+.+
T Consensus 141 ~~~~~~~~~~~~ 152 (263)
T cd07943 141 EELAEQAKLMES 152 (263)
T ss_pred HHHHHHHHHHHH
Confidence 566777776643
No 103
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=48.08 E-value=1e+02 Score=30.28 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=49.0
Q ss_pred CChHhHHHHHHHHHHHHHcCCcceEeeccC---CCcHHHHhh---h-----------------C---CCCCchhHHHHHH
Q 015605 114 VNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDE---Y-----------------G---GWINRTIVKDFTA 167 (403)
Q Consensus 114 ~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l~~~---~-----------------g---g~~~~~~~~~f~~ 167 (403)
+|++.+---.++|++|+++|++.++.++-+ +.+.+-+-+ | + .|+||++.+.|.+
T Consensus 60 ~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~ 139 (319)
T cd06591 60 FDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWK 139 (319)
T ss_pred EChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHH
Confidence 455555556899999999999988876422 122211100 0 1 2678888888776
Q ss_pred HHHHHHHHhCCCcceEEEeccCccc
Q 015605 168 YADVCFRQFGDRVSYWTTVNEPNAF 192 (403)
Q Consensus 168 ya~~~~~~~~~~v~~w~t~NEp~~~ 192 (403)
..+..+...| ---+|+=+|||...
T Consensus 140 ~~~~~~~~~G-vdg~w~D~~Ep~~~ 163 (319)
T cd06591 140 QLKKNYYDKG-VDAWWLDAAEPEYS 163 (319)
T ss_pred HHHHHhhcCC-CcEEEecCCCCCcc
Confidence 6555544444 24567899999864
No 104
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.76 E-value=1.2e+02 Score=29.89 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCC--CceeecccCcccccCCC--CCCChHhHHHHHHHHHHHHHcCCcceEeeccCC---CcHHHHhh---
Q 015605 83 KEDVKLMADTGL--DAYRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHFD---LPQALEDE--- 152 (403)
Q Consensus 83 ~eDi~l~~~lG~--~~~R~si~W~ri~P~g~--g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~---~P~~l~~~--- 152 (403)
.+-++.+++.|+ +++=+.+.|....-... =.+|.+.+---++||++|+++|++.++.++-+- .|..-+.+
T Consensus 32 ~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g 111 (317)
T cd06599 32 LEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAG 111 (317)
T ss_pred HHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCC
Confidence 334455566555 33444444543311000 123444444467899999999999988766432 22211100
Q ss_pred h------C----------------CCCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCcc
Q 015605 153 Y------G----------------GWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (403)
Q Consensus 153 ~------g----------------g~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 191 (403)
| | .++||++.+.|.+..+..+...| -.-+|+=+|||.+
T Consensus 112 ~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~E~~~ 171 (317)
T cd06599 112 AFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG-IDSTWNDNNEYEI 171 (317)
T ss_pred cEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC-CcEEEecCCCCcc
Confidence 0 0 14788888888887766655554 2356788999974
No 105
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=47.46 E-value=71 Score=30.97 Aligned_cols=101 Identities=13% Similarity=0.160 Sum_probs=63.7
Q ss_pred CCCcccCcHHHHHHHHHcCCCceeecccCcccccCCC-CCCChHhHHHHHHHHHHHHHcCCcceEeeccCC------CcH
Q 015605 75 ACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFD------LPQ 147 (403)
Q Consensus 75 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~------~P~ 147 (403)
+.-.+..+++=|+..+++|+..+=+.--|+.-.+... +......-....++++..+++|+.+++-.+|-+ +=.
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~ 106 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEK 106 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHH
Confidence 4456788899999999999999999999997332211 011111123478999999999999999998754 111
Q ss_pred HHHh---hh---C------CC---CCchhHHHHHHHHHHHHHH
Q 015605 148 ALED---EY---G------GW---INRTIVKDFTAYADVCFRQ 175 (403)
Q Consensus 148 ~l~~---~~---g------g~---~~~~~~~~f~~ya~~~~~~ 175 (403)
-+.+ .| | || .+.+.++.+.+-++.++++
T Consensus 107 ~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 107 QLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp CHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 1111 11 1 23 3456688888888888765
No 106
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=47.33 E-value=67 Score=31.87 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=50.2
Q ss_pred HHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCc
Q 015605 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (403)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P 146 (403)
+.+.+|++|.+++-|=+-|. |+++..+|..-.++-+++.++|++.+|-=++-+.-+|.+
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 47889999999999988776 554557888899999999999999999999988766544
No 107
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=46.79 E-value=1.2e+02 Score=29.96 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=61.6
Q ss_pred HHHHHHHcCC--CceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCC-----CcHHHHhh-----
Q 015605 85 DVKLMADTGL--DAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD-----LPQALEDE----- 152 (403)
Q Consensus 85 Di~l~~~lG~--~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~-----~P~~l~~~----- 152 (403)
-++.+++.++ +++=+.+.|..- .+.=.+|++.+---.++|+.|+++|++.++.+.-+- .|...+..
T Consensus 29 ~~~~~~~~~iP~d~i~lD~~~~~~--~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~ 106 (317)
T cd06600 29 VVDIMQKEGFPYDVVFLDIHYMDS--YRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKF 106 (317)
T ss_pred HHHHHHHcCCCcceEEEChhhhCC--CCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEE
Confidence 3444454443 344444555431 111134555455567899999999999887765321 12221110
Q ss_pred -------------------hCCCCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCcc
Q 015605 153 -------------------YGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (403)
Q Consensus 153 -------------------~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 191 (403)
+-.|+||++++.|.+..+.+....| -.-+|.=+|||..
T Consensus 107 v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~g-vdg~w~D~~Ep~~ 163 (317)
T cd06600 107 CEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQG-VDGIWLDMNEPSD 163 (317)
T ss_pred EECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCC-CceEEeeCCCCcc
Confidence 0136899999999888887765554 2446789999974
No 108
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=46.57 E-value=55 Score=33.95 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCCceeecc-cCcc-cccCCCCCCChHhHHHHHHHHHHHHHcC-CcceEeeccCCCcHHHHhhhCCCCCc
Q 015605 83 KEDVKLMADTGLDAYRFSI-SWSR-LIPNGRGPVNPKGLQYYNNLINELISYG-IQPHVTLHHFDLPQALEDEYGGWINR 159 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W~r-i~P~g~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtL~h~~~P~~l~~~~gg~~~~ 159 (403)
+|.+++|+++|+|.+.+++ +-+. +... -|+.. ..+-..+.|+.+++.| +.+.++|. +++|.
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~-lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg------------ 226 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRR-AGRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG------------ 226 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHH-hCCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC------------
Confidence 6889999999999777777 4332 2222 23322 1345678899999999 55666664 56663
Q ss_pred hhHHHHHHHHHHHHHHhCCCcceEEEeccCccccccccccCCCC
Q 015605 160 TIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAP 203 (403)
Q Consensus 160 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~ 203 (403)
++.+.|.+=.+.+.+.=-++|..+...-||.......+..|.++
T Consensus 227 qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 12455555556555543467888888888876433333334443
No 109
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=46.41 E-value=16 Score=26.99 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=31.7
Q ss_pred cccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccC
Q 015605 104 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF 143 (403)
Q Consensus 104 ~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~ 143 (403)
+++.|+ .+.=.+++++..-+++..|.++|| +++.|++-
T Consensus 19 s~l~p~-~~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPK-EGADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCcc-cccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 567788 555567899999999999999999 88888764
No 110
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=46.22 E-value=95 Score=30.56 Aligned_cols=108 Identities=16% Similarity=0.285 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCCC-ceeecc-cCc-ccc-cC-CCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCC
Q 015605 83 KEDVKLMADTGLD-AYRFSI-SWS-RLI-PN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI 157 (403)
Q Consensus 83 ~eDi~l~~~lG~~-~~R~si-~W~-ri~-P~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~ 157 (403)
+|.+++|+++|++ .+-+++ +-+ ++. .. ++| .+ .+-+.+.++.++++||.+.+.+. +++|. ..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-ST---FEDFIRAAELARKYGAGVKAYLL-FKPPF--------LS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------CC
Confidence 7889999999987 455555 222 122 11 223 23 45688999999999999776654 34451 12
Q ss_pred CchhHHHHHHHHHHHHHHhCCCcceEEEeccCccccccccccCCCCC
Q 015605 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPP 204 (403)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~P 204 (403)
..++++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 23678888888887765 45778777666666654333355566644
No 111
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=45.91 E-value=72 Score=32.53 Aligned_cols=51 Identities=12% Similarity=0.327 Sum_probs=39.9
Q ss_pred cCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEee
Q 015605 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
..|++||++.+++|++++=+.|. . ...+. .+....+++.+.+.|.+.++++
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~-~d~~~---~~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------S-SDSWQ---PDQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------c-CCccc---HHHHHHHHHHHHhcCCEEEEEe
Confidence 35899999999999999998886 1 12344 3457888899999998888776
No 112
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=45.83 E-value=1.4e+02 Score=30.50 Aligned_cols=93 Identities=19% Similarity=0.391 Sum_probs=60.6
Q ss_pred CcCCCcccCcHHHHHHHHHc-CCCceeecc--cCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcce-EeeccCCCcHH
Q 015605 73 DIACDGYHKYKEDVKLMADT-GLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQA 148 (403)
Q Consensus 73 ~~a~d~y~~~~eDi~l~~~l-G~~~~R~si--~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~ 148 (403)
+.+.+-.++ .+|++.+..+ ++. .++++ .|+.+ .| +.++.+.++++||+.. ++...|..|.+
T Consensus 34 g~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH~~~d~~-------~d------~~~~~~~l~~~GL~v~~i~p~~f~~~~~ 98 (378)
T TIGR02635 34 GAARNVFEK-IEDAALVHRLTGIC-PTVALHIPWDRV-------ED------YEELARYAEELGLKIGAINPNLFQDDDY 98 (378)
T ss_pred CCCCCHHHH-HHHHHHHHhhcCCC-CceeeccCCccc-------cC------HHHHHHHHHHcCCceeeeeCCccCCccc
Confidence 334433333 6788888877 555 66665 44111 23 6778888999999987 77776766654
Q ss_pred HHhhhCCCCCc--hhHHHHHHHHHHHH---HHhCCC-cceE
Q 015605 149 LEDEYGGWINR--TIVKDFTAYADVCF---RQFGDR-VSYW 183 (403)
Q Consensus 149 l~~~~gg~~~~--~~~~~f~~ya~~~~---~~~~~~-v~~w 183 (403)
++|.+.|+ ++.+...++.+.|. +.+|.. |..|
T Consensus 99 ---~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 99 ---KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 45788776 55667777777765 678874 4455
No 113
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.79 E-value=1.1e+02 Score=30.17 Aligned_cols=108 Identities=17% Similarity=0.267 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCC--CceeecccCcccccC--CCC--CCChHhHHHHHHHHHHHHHcCCcceEeeccC---CCcHHHHhh-
Q 015605 83 KEDVKLMADTGL--DAYRFSISWSRLIPN--GRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDE- 152 (403)
Q Consensus 83 ~eDi~l~~~lG~--~~~R~si~W~ri~P~--g~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l~~~- 152 (403)
.+-++.+++.|+ +++=+++.|...... ..| .+|++-+---+++|++|+++|++.++.++-+ +.|..-+.+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 344556665554 566666677543321 011 2444445556789999999999999887643 333321100
Q ss_pred --h-------------------C---CCCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCccc
Q 015605 153 --Y-------------------G---GWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (403)
Q Consensus 153 --~-------------------g---g~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 192 (403)
+ + .++||++.+.|.+..+.+ ...| ---+|.=+|||..+
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~G-vdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQG-VTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCC-ccEEEecCCCcccc
Confidence 0 1 256899999998877765 3333 23357899999753
No 114
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=45.77 E-value=55 Score=33.20 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCceeecccCcccccC-CCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchh
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~ 161 (403)
++|++.+.+.|++.+|++++-|.+.-. --+.--++.++...+.++.+++.|+++.++.- + .+-.+
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e---------d--~~r~~--- 143 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE---------D--ASRTD--- 143 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec---------c--CCCCC---
Confidence 789999999999999999987775322 02333467889999999999999999887742 1 22233
Q ss_pred HHHHHHHHHHHHH
Q 015605 162 VKDFTAYADVCFR 174 (403)
Q Consensus 162 ~~~f~~ya~~~~~ 174 (403)
.+...++++.+.+
T Consensus 144 ~~~l~~~~~~~~~ 156 (378)
T PRK11858 144 LDFLIEFAKAAEE 156 (378)
T ss_pred HHHHHHHHHHHHh
Confidence 4566666666543
No 115
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=45.52 E-value=51 Score=33.18 Aligned_cols=80 Identities=21% Similarity=0.162 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCCceeecccCcccccCC-CCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchh
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~ 161 (403)
++|++.+.+.|++.+|+.++-|.+.-.- -+.--++.++...+.|+.++++|+++.+++- + .+..+
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e---------d--~~r~~--- 140 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE---------D--ASRAD--- 140 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec---------C--CCCCC---
Confidence 8999999999999999999887643220 1222356788899999999999998776542 1 22233
Q ss_pred HHHHHHHHHHHHHHhC
Q 015605 162 VKDFTAYADVCFRQFG 177 (403)
Q Consensus 162 ~~~f~~ya~~~~~~~~ 177 (403)
.+.+.++++.+.+ .|
T Consensus 141 ~~~l~~~~~~~~~-~G 155 (365)
T TIGR02660 141 PDFLVELAEVAAE-AG 155 (365)
T ss_pred HHHHHHHHHHHHH-cC
Confidence 5677777777654 45
No 116
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=44.81 E-value=31 Score=40.51 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCceeecccCcccc-----cCC------CC-----CCCh----HhHHHHHHHHHHHHHcCCcceEee
Q 015605 84 EDVKLMADTGLDAYRFSISWSRLI-----PNG------RG-----PVNP----KGLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 84 eDi~l~~~lG~~~~R~si~W~ri~-----P~g------~g-----~~n~----~~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
+.|+.+|+||++++=+.=-..... +.| -. .+|. ...+=++++|++|.++||++|+.+
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 668899999999997753222111 000 00 0111 145668999999999999999974
No 117
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=44.78 E-value=66 Score=35.94 Aligned_cols=102 Identities=23% Similarity=0.353 Sum_probs=65.7
Q ss_pred HcCCCceeeccc-CcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeecc---CCCcHHHHhh--------------
Q 015605 91 DTGLDAYRFSIS-WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH---FDLPQALEDE-------------- 152 (403)
Q Consensus 91 ~lG~~~~R~si~-W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h---~~~P~~l~~~-------------- 152 (403)
++=++++++++. |.+ .-+.=.+|+.-+---+.+|+.|++.||+.++.+.. -|.|..-+.+
T Consensus 293 ~IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 293 DIPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred cCcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 356788999996 876 11112344444444569999999999999988763 2333322111
Q ss_pred ----------hCCCCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCcccccc
Q 015605 153 ----------YGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANL 195 (403)
Q Consensus 153 ----------~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~ 195 (403)
+-.++||+.++.|.+....-+..+| -.-+|.=+|||.+....
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 0126899999999974433344443 36678999999986543
No 118
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=44.40 E-value=68 Score=30.86 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCCceeecccCcccccC-CCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchh
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~ 161 (403)
+.+++.+++.|++.+|+.++=|...-. ..|.--++.++...+.++.+++.|+++.++.-+| .+ +. +..
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~---~~~ 149 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GY---KAN 149 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cC---CCC
Confidence 368999999999999998865543211 1233346778999999999999999988876555 11 11 123
Q ss_pred HHHHHHHHHHHHH
Q 015605 162 VKDFTAYADVCFR 174 (403)
Q Consensus 162 ~~~f~~ya~~~~~ 174 (403)
.+.+.++++.+.+
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T cd07941 150 PEYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHHh
Confidence 5666777777755
No 119
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=44.27 E-value=89 Score=34.81 Aligned_cols=104 Identities=16% Similarity=0.334 Sum_probs=66.5
Q ss_pred HHHHHHHcCCC--ceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec---cCCCc-----------HH
Q 015605 85 DVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---HFDLP-----------QA 148 (403)
Q Consensus 85 Di~l~~~lG~~--~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---h~~~P-----------~~ 148 (403)
=++.++++|+. ..-..|.|-.-..+ =.+|+.......++++.|.++|++.++++. +-+.. .|
T Consensus 316 vv~~~~~agiPld~~~~DiDyMd~ykD--FTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v~ 393 (805)
T KOG1065|consen 316 VVENYRAAGIPLDVIVIDIDYMDGYKD--FTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDVL 393 (805)
T ss_pred HHHHHHHcCCCcceeeeehhhhhcccc--eeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhcee
Confidence 35666777776 55555555433222 246777777789999999999999999987 22222 00
Q ss_pred HHh----------hhCC------CCCchhHHHHHHHHHHHHHHhCCCcc---eEEEeccCccccc
Q 015605 149 LED----------EYGG------WINRTIVKDFTAYADVCFRQFGDRVS---YWTTVNEPNAFAN 194 (403)
Q Consensus 149 l~~----------~~gg------~~~~~~~~~f~~ya~~~~~~~~~~v~---~w~t~NEp~~~~~ 194 (403)
+.+ -..| ++|+++++.|. ..+++|.+.|. +|+-+|||..+..
T Consensus 394 I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~----~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 394 IKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWL----DELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred eecccCchhhhcccCCCcccccccCCchHHHHHH----HHHHhhcccCCccceEEECCCcccCCC
Confidence 100 0112 56776665554 45558888876 8999999986553
No 120
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=44.23 E-value=95 Score=30.84 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=52.1
Q ss_pred ChHhHHHHHHHHHHHHHcCCcceEeeccCC-----CcHHHHhh------------------------hCCCCCchhHHHH
Q 015605 115 NPKGLQYYNNLINELISYGIQPHVTLHHFD-----LPQALEDE------------------------YGGWINRTIVKDF 165 (403)
Q Consensus 115 n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~-----~P~~l~~~------------------------~gg~~~~~~~~~f 165 (403)
|++.+---+++|++|+++|++.++.++-+- .|..-+.+ +-.++||++++.|
T Consensus 59 d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww 138 (339)
T cd06603 59 DKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWW 138 (339)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHH
Confidence 333333347799999999999888776442 22221111 0136799999999
Q ss_pred HHHHHHHHHHhC-CCcceEEEeccCcccc
Q 015605 166 TAYADVCFRQFG-DRVSYWTTVNEPNAFA 193 (403)
Q Consensus 166 ~~ya~~~~~~~~-~~v~~w~t~NEp~~~~ 193 (403)
.+..+.+....+ +-+-+|+=+|||.++.
T Consensus 139 ~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 139 ASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred HHHHHHHhhcccCCCceEEeccCCccccC
Confidence 998887765433 2357789999998753
No 121
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=43.84 E-value=53 Score=31.01 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=45.4
Q ss_pred ecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhC
Q 015605 99 FSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 99 ~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 177 (403)
+.+.|..+.++|.-.... .......+++.++++|+++++++..++...... -..+++..+.|++=+-..+++|+
T Consensus 26 v~~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 26 INLAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 344566665554322211 123467889999999999999997665442211 12466777777666666666665
No 122
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=43.56 E-value=61 Score=32.43 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCCceeecc-cCc-ccccCCCCCCChHhHHHHHHHHHHHHHcCCcce-EeeccCCCcHHHHhhhCCCCCc
Q 015605 83 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~~~ 159 (403)
++.++.|+++|++.+.+++ +-+ ++... -|.. -..+-+.+.|+.+++.|+.++ +.| -+++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~-lgR~--~~~~~~~~ai~~l~~~G~~~v~~dl-i~GlPg------------ 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLF-LGRQ--HSAKNIAPAIETALKSGIENISLDL-MYGLPL------------ 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHH-hCCC--CCHHHHHHHHHHHHHcCCCeEEEec-cCCCCC------------
Confidence 6889999999998666665 232 23322 2321 125567889999999999855 343 255663
Q ss_pred hhHHHHHHHHHHHHHHhCCCcceEEEeccCc
Q 015605 160 TIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (403)
Q Consensus 160 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 190 (403)
++.+.|.+-.+.+.+.=-+.+..+...=||.
T Consensus 164 qt~~~~~~~l~~~~~l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 164 QTLNSLKEELKLAKELPINHLSAYALSVEPN 194 (360)
T ss_pred CCHHHHHHHHHHHHccCCCEEEeecceEcCC
Confidence 2245566656655543223454444444444
No 123
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=42.57 E-value=62 Score=30.93 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=54.5
Q ss_pred HHHHHHHHHcC----CCceeecccCcccc--cCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCC
Q 015605 83 KEDVKLMADTG----LDAYRFSISWSRLI--PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGW 156 (403)
Q Consensus 83 ~eDi~l~~~lG----~~~~R~si~W~ri~--P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~ 156 (403)
.+|++...+.| ++.+|+.++.|.+. -+ -+.--++.++...+.++.+++.|++..++..+ .+-
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~ 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYK-LKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC
Confidence 78999999999 99999987666553 22 12222456888899999999999987754421 222
Q ss_pred CCchhHHHHHHHHHHHHHHhC
Q 015605 157 INRTIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 157 ~~~~~~~~f~~ya~~~~~~~~ 177 (403)
. ..+.+.+.++.+.+ +|
T Consensus 140 ~---~~~~~~~~~~~~~~-~G 156 (268)
T cd07940 140 T---DLDFLIEVVEAAIE-AG 156 (268)
T ss_pred C---CHHHHHHHHHHHHH-cC
Confidence 2 35677777777754 44
No 124
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=42.53 E-value=42 Score=37.29 Aligned_cols=93 Identities=13% Similarity=0.234 Sum_probs=58.1
Q ss_pred ccCcHH-HHHHHHHcCCCceeecccCcc---------------cccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec-
Q 015605 79 YHKYKE-DVKLMADTGLDAYRFSISWSR---------------LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH- 141 (403)
Q Consensus 79 y~~~~e-Di~l~~~lG~~~~R~si~W~r---------------i~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~- 141 (403)
|.-+.+ -++.+|+||++++-+.--... +.|. -|. .+-++++|++|.++||.+|+.+-
T Consensus 249 y~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~-~Gt-----p~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 249 YREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSR-SGT-----PEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccc-cCC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 444333 489999999999987643222 1111 122 24489999999999999999865
Q ss_pred -cCCC-------------cHHHHhhhCC----C-------CCchhHHHHHHHHHHHHHHhC
Q 015605 142 -HFDL-------------PQALEDEYGG----W-------INRTIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 142 -h~~~-------------P~~l~~~~gg----~-------~~~~~~~~f~~ya~~~~~~~~ 177 (403)
|+.- +.|+...-.| | .++++...+.+=++.-+++|+
T Consensus 323 nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 323 SHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred ccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 3321 1222211011 2 245777777888888888875
No 125
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=42.33 E-value=45 Score=37.37 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=43.3
Q ss_pred cCcHHHHHHHHHcCCCceeecccCcccccCCCC-------CCChH--hHHHHHHHHHHHHHcCCcceEee--ccCC
Q 015605 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRG-------PVNPK--GLQYYNNLINELISYGIQPHVTL--HHFD 144 (403)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g-------~~n~~--~~~~y~~~i~~l~~~gi~p~vtL--~h~~ 144 (403)
....+-++.+++||++++=+|--+.-.-....| .+|++ +.+-++++++++.++||.+|+.+ .|..
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 346778899999999999877544321100011 12211 34558999999999999999985 4643
No 126
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=41.74 E-value=37 Score=33.81 Aligned_cols=71 Identities=17% Similarity=0.417 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhh--------CC--------CCCchhHHHHHHHHHHHH----HHhC
Q 015605 118 GLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY--------GG--------WINRTIVKDFTAYADVCF----RQFG 177 (403)
Q Consensus 118 ~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~--------gg--------~~~~~~~~~f~~ya~~~~----~~~~ 177 (403)
-.+.=+++++++++-||+|++--+---.|..+.+++ |. |++|. -+.|++.++... +.||
T Consensus 93 q~~Lq~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~-dplF~~i~~~F~~~q~~~yG 171 (333)
T PF05089_consen 93 QAELQKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPT-DPLFAEIAKLFYEEQIKLYG 171 (333)
T ss_dssp HHHHHHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS---HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCC-CchHHHHHHHHHHHHHHhcC
Confidence 345678999999999999999888667898888765 22 33342 367777666665 5688
Q ss_pred CCcceEE--EeccCc
Q 015605 178 DRVSYWT--TVNEPN 190 (403)
Q Consensus 178 ~~v~~w~--t~NEp~ 190 (403)
.-.++. +|||-.
T Consensus 172 -~~~~Y~~D~FnE~~ 185 (333)
T PF05089_consen 172 -TDHIYAADPFNEGG 185 (333)
T ss_dssp ---SEEE--TTTTS-
T ss_pred -CCceeCCCccCCCC
Confidence 444443 788854
No 127
>PRK12568 glycogen branching enzyme; Provisional
Probab=41.56 E-value=34 Score=37.84 Aligned_cols=93 Identities=13% Similarity=0.195 Sum_probs=58.3
Q ss_pred ccCcHHH-HHHHHHcCCCceeecc--------cCc-------ccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec-
Q 015605 79 YHKYKED-VKLMADTGLDAYRFSI--------SWS-------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH- 141 (403)
Q Consensus 79 y~~~~eD-i~l~~~lG~~~~R~si--------~W~-------ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~- 141 (403)
|....+. |+.+|+||++++-+.- +|. .+.|. -|. .+-++++|++|.++||.+|+.+-
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~-~G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTAR-HGS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcc-cCC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444445 6889999999996542 342 11122 132 34589999999999999999854
Q ss_pred -cCCCcH---------HHHh----h---hCC-------CCCchhHHHHHHHHHHHHHHhC
Q 015605 142 -HFDLPQ---------ALED----E---YGG-------WINRTIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 142 -h~~~P~---------~l~~----~---~gg-------~~~~~~~~~f~~ya~~~~~~~~ 177 (403)
|+.--. .+.. . +.. +.++++.+.+.+=++.-+++|+
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 542210 0000 0 012 3456777888888888888886
No 128
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=39.88 E-value=85 Score=38.12 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=44.2
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCcccccC--CC-----CCCChH--hHHHHHHHHHHHHHcCCcceEee--ccCC
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPN--GR-----GPVNPK--GLQYYNNLINELISYGIQPHVTL--HHFD 144 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~--g~-----g~~n~~--~~~~y~~~i~~l~~~gi~p~vtL--~h~~ 144 (403)
+....+-++.+++||++++=+|--+.-.--. |- ..+|++ +.+-+++++++|.++||.+|+.+ .|..
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 3446677899999999999877555421000 10 112222 34558999999999999999985 4653
No 129
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=39.63 E-value=96 Score=30.94 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhH
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIV 162 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~ 162 (403)
.+|++...+.|++.+|+...+++. +--.+.|+.+++.|++..+++..- + +..+
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~a-----------~---~~~~ 143 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMMS-----------H---MAPP 143 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEec-----------c---CCCH
Confidence 589999999999999998855543 124889999999999999988531 1 1235
Q ss_pred HHHHHHHHHHHHHhC
Q 015605 163 KDFTAYADVCFRQFG 177 (403)
Q Consensus 163 ~~f~~ya~~~~~~~~ 177 (403)
+.+.+.++.+. .+|
T Consensus 144 e~l~~~a~~~~-~~G 157 (337)
T PRK08195 144 EKLAEQAKLME-SYG 157 (337)
T ss_pred HHHHHHHHHHH-hCC
Confidence 66777777754 355
No 130
>PRK10426 alpha-glucosidase; Provisional
Probab=39.06 E-value=1.9e+02 Score=31.63 Aligned_cols=104 Identities=19% Similarity=0.259 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCC--ceeecccCcccccCCCC-------CCChHhHHHHHHHHHHHHHcCCcceEeeccC---CCcHHHH
Q 015605 83 KEDVKLMADTGLD--AYRFSISWSRLIPNGRG-------PVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALE 150 (403)
Q Consensus 83 ~eDi~l~~~lG~~--~~R~si~W~ri~P~g~g-------~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l~ 150 (403)
.+-++.+++.|+. ++=+. .|+......-| .+|++-+--.+++|++|++.|++.++.+.-+ +.|..-+
T Consensus 224 ~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e 302 (635)
T PRK10426 224 QKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEE 302 (635)
T ss_pred HHHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHH
Confidence 3445777777754 44444 68654322111 3465555556899999999999988876532 3343322
Q ss_pred hh---h------C---------------CCCCchhHHHHHHHHHHHHHHhCCCcceE-EEeccC
Q 015605 151 DE---Y------G---------------GWINRTIVKDFTAYADVCFRQFGDRVSYW-TTVNEP 189 (403)
Q Consensus 151 ~~---~------g---------------g~~~~~~~~~f~~ya~~~~~~~~~~v~~w-~t~NEp 189 (403)
.+ | | .++||+..+.|.+..+..+...| |+.| .=+||+
T Consensus 303 ~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 303 AAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 11 0 1 16899999999887766555565 6665 788994
No 131
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=38.78 E-value=73 Score=30.27 Aligned_cols=116 Identities=14% Similarity=0.211 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHcCCcceEeeccC--------------CCcHHHHhh----------------hCC----CCCchh---H
Q 015605 120 QYYNNLINELISYGIQPHVTLHHF--------------DLPQALEDE----------------YGG----WINRTI---V 162 (403)
Q Consensus 120 ~~y~~~i~~l~~~gi~p~vtL~h~--------------~~P~~l~~~----------------~gg----~~~~~~---~ 162 (403)
+.++.+|+.-+++|..+|+||.=. ..|.|-..+ .+| -.+|+. .
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 568999999999999999998621 112111000 011 113330 1
Q ss_pred HHHHHHHHHHHHHhCCC-----cceEEEeccCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHH
Q 015605 163 KDFTAYADVCFRQFGDR-----VSYWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVA 237 (403)
Q Consensus 163 ~~f~~ya~~~~~~~~~~-----v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~ 237 (403)
..-.+++..+..+||.. |++|..=|||.+...- =.-.+|.. ..+.-+....++.|+|+
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~T--H~dVHP~~---------------~t~~El~~r~i~~Akai 166 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHST--HRDVHPEP---------------VTYDELRDRSIEYAKAI 166 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHH--TTTT--S------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhccc--ccccCCCC---------------CCHHHHHHHHHHHHHHH
Confidence 22344466677777754 9999999999974321 01122222 12344555666677665
Q ss_pred HHHHHHhcCCCCCcEEEEec
Q 015605 238 RLYRKKYQDKQRGYIGVNIF 257 (403)
Q Consensus 238 ~~~r~~~~~~~~g~VG~~~~ 257 (403)
| +..|.. -.+|.+.-
T Consensus 167 K---~~DP~a--~v~GP~~w 181 (239)
T PF12891_consen 167 K---AADPDA--KVFGPVEW 181 (239)
T ss_dssp H---HH-TTS--EEEEEEE-
T ss_pred H---hhCCCC--eEeechhh
Confidence 5 455532 24677754
No 132
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=37.17 E-value=89 Score=29.40 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhC
Q 015605 119 LQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 119 ~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 177 (403)
.+...+.|..|+++|+++++++.-+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4557889999999999999999754433211 012455556666666666667776
No 133
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=36.98 E-value=76 Score=30.78 Aligned_cols=60 Identities=25% Similarity=0.347 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHcCCCceeecccCcccccC-CCCCCChHhHHHHHHHHHHHHHcCCcceEee
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
--++|++...+.|++.+-+.++=|...-. .-+.=-++.++.+.++++.++++|+++-+++
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35899999999999999988866655322 1234456789999999999999999998888
No 134
>PRK14706 glycogen branching enzyme; Provisional
Probab=36.71 E-value=1.6e+02 Score=32.28 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=53.2
Q ss_pred HHHHHcCCCceeecccCcccccCCCCC--C--------Ch--HhHHHHHHHHHHHHHcCCcceEeec--cCC--------
Q 015605 87 KLMADTGLDAYRFSISWSRLIPNGRGP--V--------NP--KGLQYYNNLINELISYGIQPHVTLH--HFD-------- 144 (403)
Q Consensus 87 ~l~~~lG~~~~R~si~W~ri~P~g~g~--~--------n~--~~~~~y~~~i~~l~~~gi~p~vtL~--h~~-------- 144 (403)
+.+|+||++++-+.--=. .|. .+. + +. ...+=++++|++|.++||++|+.+- |+.
T Consensus 175 ~ylk~lG~t~velmPv~e--~~~-~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~ 251 (639)
T PRK14706 175 EYVTYMGYTHVELLGVME--HPF-DGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAH 251 (639)
T ss_pred HHHHHcCCCEEEccchhc--CCC-CCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhc
Confidence 678999999987652100 111 110 1 10 1234489999999999999998743 542
Q ss_pred ---CcHH-HHhhhCC----C-------CCchhHHHHHHHHHHHHHHhC
Q 015605 145 ---LPQA-LEDEYGG----W-------INRTIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 145 ---~P~~-l~~~~gg----~-------~~~~~~~~f~~ya~~~~~~~~ 177 (403)
.|.+ ..+...| | .++++.+.+.+=++.-+++|+
T Consensus 252 ~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 252 FDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred cCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 0000011 2 257888888899999999886
No 135
>PRK12677 xylose isomerase; Provisional
Probab=35.79 E-value=2.4e+02 Score=28.72 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=53.8
Q ss_pred CcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcce-EeeccCCCcHHHHhhhCCCCCc
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~~~ 159 (403)
...|-++.++++|++++=+.. ..+.|-+. -..+--+..+++-+.+.++||++. +|...|..|.+ +.|++.++
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~--~~l~p~~~--~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD--DDLVPFGA--TDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc--cccCCCCC--ChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 358889999999999886632 23444421 111111246778888899999966 55554555543 33788875
Q ss_pred hh-HHHH-HHHHHHH---HHHhCC
Q 015605 160 TI-VKDF-TAYADVC---FRQFGD 178 (403)
Q Consensus 160 ~~-~~~f-~~ya~~~---~~~~~~ 178 (403)
+- +..+ .++.+.+ +..+|-
T Consensus 105 d~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 105 DRDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 32 2233 4444443 355653
No 136
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=35.59 E-value=69 Score=32.00 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=49.0
Q ss_pred HHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHH
Q 015605 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDF 165 (403)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f 165 (403)
|++|.+.|++-+=.|+ ..|++ .+...++.++++++.+.+.|+++||... |+-|.. -||. .+.++.|
T Consensus 22 i~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S-~~~l~~f 87 (360)
T COG3589 22 IDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNIS-LDNLSRF 87 (360)
T ss_pred HHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCC-hHHHHHH
Confidence 6777888887665554 33442 3446799999999999999999999994 887753 3443 3345666
Q ss_pred HHH
Q 015605 166 TAY 168 (403)
Q Consensus 166 ~~y 168 (403)
.+.
T Consensus 88 ~e~ 90 (360)
T COG3589 88 QEL 90 (360)
T ss_pred HHh
Confidence 655
No 137
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=35.55 E-value=1.7e+02 Score=30.20 Aligned_cols=69 Identities=14% Similarity=0.263 Sum_probs=46.0
Q ss_pred HHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHH----HHHHcCCcc-eEeeccCCCcHHHHhhhCCCCCc
Q 015605 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLIN----ELISYGIQP-HVTLHHFDLPQALEDEYGGWINR 159 (403)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~----~l~~~gi~p-~vtL~h~~~P~~l~~~~gg~~~~ 159 (403)
-++.+.+||+..|-| --..|.|+|. -..+..+..+++++ .+.+.||+. ++|..-|..|.... |+++||
T Consensus 83 aFef~~kLg~~~~~F--HD~D~~peg~--~~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~TnP 155 (434)
T TIGR02630 83 AFEFFEKLGVPYYCF--HDRDIAPEGA--SLRETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAATSP 155 (434)
T ss_pred HHHHHHHhCCCeecc--CccccCCCCC--CHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcCCCC
Confidence 356689999988765 3456788852 22333334455554 456789985 56777799998652 999998
Q ss_pred h
Q 015605 160 T 160 (403)
Q Consensus 160 ~ 160 (403)
+
T Consensus 156 d 156 (434)
T TIGR02630 156 D 156 (434)
T ss_pred C
Confidence 6
No 138
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=35.09 E-value=1.6e+02 Score=29.57 Aligned_cols=94 Identities=18% Similarity=0.305 Sum_probs=55.1
Q ss_pred cHHHHHHHHHcCCCceeecc-cC-cccccCCCCC-CChHhHHHHHHHHHHHHHcCCcce-EeeccCCCcHHHHhhhCCCC
Q 015605 82 YKEDVKLMADTGLDAYRFSI-SW-SRLIPNGRGP-VNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWI 157 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W-~ri~P~g~g~-~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~ 157 (403)
-++.+++|+++|++.+-+++ += .++... -|. .+ .+-..+.|+.+++.|+..+ +.+ =+++|. .
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~-l~r~~~---~~~~~~~i~~l~~~g~~~v~~dl-i~GlPg---------q 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKK-IGRTHN---EEDVYEAIANAKKAGFDNISIDL-IYALPG---------Q 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCCcEEEee-ecCCCC---------C
Confidence 47889999999999666666 22 223322 122 23 4567889999999999744 333 256663 2
Q ss_pred CchhHHHHHHHHHHHHHHhCCCcceEEEeccCccc
Q 015605 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (403)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 192 (403)
+.+.|.+=.+.+.+.=-+.|..+...-+|...
T Consensus 165 ---t~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~ 196 (377)
T PRK08599 165 ---TIEDFKESLAKALALDIPHYSAYSLILEPKTV 196 (377)
T ss_pred ---CHHHHHHHHHHHHccCCCEEeeeceeecCCCh
Confidence 24455555555544222445555444566643
No 139
>PLN02389 biotin synthase
Probab=34.93 E-value=99 Score=31.44 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=42.6
Q ss_pred CcHHHHHHHHHcCCCceeecccCcc-cccCCCCCCChHhHHHHHHHHHHHHHcCCcceEee
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~r-i~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
.-+|.++.||++|++.|-.+++=++ ++|+-...- .++..-+.++.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~---s~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTR---SYDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCC---CHHHHHHHHHHHHHcCCeEeEEE
Confidence 5689999999999999999886233 444411111 36778899999999999887665
No 140
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=34.90 E-value=2.8e+02 Score=24.72 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCcc
Q 015605 160 TIVKDFTAYADVCFRQFGDRVS 181 (403)
Q Consensus 160 ~~~~~f~~ya~~~~~~~~~~v~ 181 (403)
+..+....|++.+-++.|-++-
T Consensus 100 ~~~~~~~~f~~~v~~~~G~~~~ 121 (184)
T cd06525 100 ELNDYVLRFIEEFEKLSGLKVG 121 (184)
T ss_pred HHHHHHHHHHHHHHHHHCCCeE
Confidence 3345566677776666665443
No 141
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=34.64 E-value=1.1e+02 Score=31.72 Aligned_cols=59 Identities=24% Similarity=0.411 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCceeecc-cCcc-cccC-CCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCc
Q 015605 83 KEDVKLMADTGLDAYRFSI-SWSR-LIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W~r-i~P~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P 146 (403)
+|.+++|+++|++.+-+++ +-+. +... ++| .+ .+.+.+.++.++++||.+.+++- +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~-~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKG-LT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCC-CC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 6778999999999888887 3332 2211 122 23 45678999999999999887764 3455
No 142
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.30 E-value=4.4e+02 Score=25.57 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=32.7
Q ss_pred cccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccC
Q 015605 106 LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF 143 (403)
Q Consensus 106 i~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~ 143 (403)
..|...|-++++.+..++++++.+.++|-+.++=|.|-
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 63 GYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred CCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 34554577899999999999999999999999999984
No 143
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=34.18 E-value=2.2e+02 Score=24.82 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=39.4
Q ss_pred cCcHHHHHHHHHcCCCceeeccc-Ccc-cccCCCCCCChHhHHHHHHHHHHHHHcC-CcceEee
Q 015605 80 HKYKEDVKLMADTGLDAYRFSIS-WSR-LIPNGRGPVNPKGLQYYNNLINELISYG-IQPHVTL 140 (403)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~-W~r-i~P~g~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtL 140 (403)
..-++.++.|+++|++.+.+|++ ++. +...-....+ .+.+.+.|+.+++.| +.+-+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 34478899999999999999986 543 2111011122 577899999999999 5554433
No 144
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=34.09 E-value=71 Score=36.09 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=42.2
Q ss_pred ccCcHHHHHHHHHcCCCceeecccC---------------cccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSISW---------------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W---------------~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
+....+-+..+++||++++=+|--. .+|.|. -| +.+-+++++++++++||.+|+.+-
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~-lG-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPE-LG-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCC-CC-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 3446788899999999999776533 334443 22 345589999999999999999853
No 145
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=33.05 E-value=1.6e+02 Score=29.95 Aligned_cols=104 Identities=17% Similarity=0.232 Sum_probs=62.0
Q ss_pred cHHHHHHHHHcCCCceeecc-cCcc-cccCCCCC-CChHhHHHHHHHHHHHHHcCCc-ceEeeccCCCcHHHHhhhCCCC
Q 015605 82 YKEDVKLMADTGLDAYRFSI-SWSR-LIPNGRGP-VNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWI 157 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~r-i~P~g~g~-~n~~~~~~y~~~i~~l~~~gi~-p~vtL~h~~~P~~l~~~~gg~~ 157 (403)
-++.++.|+++|++.+-+++ +-+. +... -|+ .+ .+-..+.++.+++.|+. +-++|. +++|.
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~-l~R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------- 178 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLAL-CGRSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPH---------- 178 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHH-hCCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 36889999999999666555 2221 2212 122 22 33457788999999998 556664 56663
Q ss_pred CchhHHHHHHHHHHHHHHhCCCcceEEEeccCccccccccccCCC
Q 015605 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIA 202 (403)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~ 202 (403)
++.+.|.+=++.+.+-=-++|..+...-||......-+..|.+
T Consensus 179 --qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 --QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred --CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 2344555555555543336777777777887544333444433
No 146
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=32.88 E-value=1.1e+02 Score=30.53 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=36.1
Q ss_pred HHHHHHcCCCceeecccCcc---cccCCCCCCCh----HhHHHHHHHHHHHHHcCCcceEeeccCC
Q 015605 86 VKLMADTGLDAYRFSISWSR---LIPNGRGPVNP----KGLQYYNNLINELISYGIQPHVTLHHFD 144 (403)
Q Consensus 86 i~l~~~lG~~~~R~si~W~r---i~P~g~g~~n~----~~~~~y~~~i~~l~~~gi~p~vtL~h~~ 144 (403)
++++|++|++.+=+.-.-.. +.|.....+|. -.-+...++.++|+++||++-+-+.++|
T Consensus 97 ~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d 162 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD 162 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS
T ss_pred HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH
Confidence 78999999998876442221 12221112221 1346789999999999999999888765
No 147
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=32.86 E-value=68 Score=33.06 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCceeecccCcccccC-CC-----CCCC--hHhHHHHHHHHHHHHHcCCcceEee--cc
Q 015605 84 EDVKLMADTGLDAYRFSISWSRLIPN-GR-----GPVN--PKGLQYYNNLINELISYGIQPHVTL--HH 142 (403)
Q Consensus 84 eDi~l~~~lG~~~~R~si~W~ri~P~-g~-----g~~n--~~~~~~y~~~i~~l~~~gi~p~vtL--~h 142 (403)
+-++.+++||++++=++=-=.-+... |- -.+| .-.++-.+++++++.++||+.++.+ .|
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH 101 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNH 101 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 56788999999999665311111111 10 0111 2346678999999999999999987 55
No 148
>PRK05474 xylose isomerase; Provisional
Probab=32.51 E-value=1.9e+02 Score=29.90 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=46.7
Q ss_pred HHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHH----HHHHcCCcc-eEeeccCCCcHHHHhhhCCCCCc
Q 015605 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLIN----ELISYGIQP-HVTLHHFDLPQALEDEYGGWINR 159 (403)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~----~l~~~gi~p-~vtL~h~~~P~~l~~~~gg~~~~ 159 (403)
-++.+.+||+..|=|- -..|.|+|. -..+..+..+++++ .+.+.||+. ++|..-|..|... .|+++||
T Consensus 84 afe~~~kLg~~~~~FH--D~D~~peg~--s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~---~GA~Tnp 156 (437)
T PRK05474 84 AFEFFTKLGVPYYCFH--DVDVAPEGA--SLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYM---AGAATNP 156 (437)
T ss_pred HHHHHHHhCCCeeccC--ccccCCCCC--CHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCcccc---CCcCCCC
Confidence 3567999999987653 456778852 22333344555554 455788884 5677779999764 2899998
Q ss_pred h
Q 015605 160 T 160 (403)
Q Consensus 160 ~ 160 (403)
+
T Consensus 157 d 157 (437)
T PRK05474 157 D 157 (437)
T ss_pred C
Confidence 6
No 149
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=32.46 E-value=2.1e+02 Score=29.27 Aligned_cols=139 Identities=18% Similarity=0.224 Sum_probs=79.4
Q ss_pred cHHHHHHHHHcCCCceeecccCcccccC---CCCC--CChHhH-HHHHHHHHHHHHcCCcceEeec----------cCCC
Q 015605 82 YKEDVKLMADTGLDAYRFSISWSRLIPN---GRGP--VNPKGL-QYYNNLINELISYGIQPHVTLH----------HFDL 145 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~---g~g~--~n~~~~-~~y~~~i~~l~~~gi~p~vtL~----------h~~~ 145 (403)
..+-++.++++|++.+-+.--|..---+ +-|. +|++-+ +-...+++.+++.||++=+=+- .-..
T Consensus 60 i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~h 139 (394)
T PF02065_consen 60 ILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREH 139 (394)
T ss_dssp HHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSS
T ss_pred HHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHhC
Confidence 4556788999999998888899753111 0122 233222 1268999999999999754321 1246
Q ss_pred cHHHHhhhC-----C-------CCCchhHHHHHHHHHHHHHHhCCCcceE-EEeccCccccccccccCCCCCCCCCCccc
Q 015605 146 PQALEDEYG-----G-------WINRTIVKDFTAYADVCFRQFGDRVSYW-TTVNEPNAFANLGYDYGIAPPQRCSSINH 212 (403)
Q Consensus 146 P~~l~~~~g-----g-------~~~~~~~~~f~~ya~~~~~~~~~~v~~w-~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~ 212 (403)
|.|+...-+ | ..+|++.+...+-...+++.+| |+|. .=+|..-. .++...
T Consensus 140 Pdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g--idYiK~D~n~~~~-----------~~~~~~---- 202 (394)
T PF02065_consen 140 PDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG--IDYIKWDFNRDIT-----------EAGSPS---- 202 (394)
T ss_dssp BGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT---SEEEEE-TS-TT-----------S-SSTT----
T ss_pred ccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC--CCEEEeccccCCC-----------CCCCCC----
Confidence 888753211 1 3577888888888888888886 4444 33443211 111110
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcC
Q 015605 213 CSRGNSSTEPYITVHHVLLAHASVARLYRKKYQD 246 (403)
Q Consensus 213 ~~~~~~~~~~~~~~hn~llAHa~A~~~~r~~~~~ 246 (403)
.. ...|...++--+..+.+++.+|.
T Consensus 203 -------~~--~~~~~~~~~~y~l~~~L~~~~P~ 227 (394)
T PF02065_consen 203 -------LP--EGYHRYVLGLYRLLDRLRARFPD 227 (394)
T ss_dssp -------S---GHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -------ch--HHHHHHHHHHHHHHHHHHHhCCC
Confidence 01 35666666666677888888763
No 150
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=32.26 E-value=43 Score=24.17 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=24.8
Q ss_pred HHHHHHHH-HcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHH
Q 015605 123 NNLINELI-SYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYA 169 (403)
Q Consensus 123 ~~~i~~l~-~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya 169 (403)
+++++.|. ..||+|.+|.. .|-. +.+++.+.|..|-
T Consensus 16 ~E~v~~L~~~a~I~P~~T~~-----VW~~------Le~eN~eFF~aY~ 52 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTST-----VWQK------LEKENPEFFKAYY 52 (54)
T ss_pred HHHHHHHHHHcCCChHHHHH-----HHHH------HHHHCHHHHHHhh
Confidence 57788884 66999999885 4532 3345677777763
No 151
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=31.96 E-value=1.6e+02 Score=31.19 Aligned_cols=93 Identities=9% Similarity=0.095 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEee----ccCCCcHHHHhh------
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL----HHFDLPQALEDE------ 152 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL----~h~~~P~~l~~~------ 152 (403)
+.|++...+.|++.+|+....+.+. -....++.+++.|.....++ .+-..|..+.+.
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv~-------------nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~ 166 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDPR-------------NLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLD 166 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChHH-------------HHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999998776651 13344444455554442222 111222221110
Q ss_pred ----------hCCCCCchhHHHHHHHHHHHHHHhCCCcc-eEEEeccCcc
Q 015605 153 ----------YGGWINRTIVKDFTAYADVCFRQFGDRVS-YWTTVNEPNA 191 (403)
Q Consensus 153 ----------~gg~~~~~~~~~f~~ya~~~~~~~~~~v~-~w~t~NEp~~ 191 (403)
-.|...|. ...+.++.+.+++++.++ ...+-|-..+
T Consensus 167 ~Gad~I~IkDtaGll~P~---~~~~LV~~Lk~~~~~~ipI~~H~Hnt~Gl 213 (499)
T PRK12330 167 MGADSICIKDMAALLKPQ---PAYDIVKGIKEACGEDTRINLHCHSTTGV 213 (499)
T ss_pred cCCCEEEeCCCccCCCHH---HHHHHHHHHHHhCCCCCeEEEEeCCCCCc
Confidence 14556654 556666677777763333 4456666553
No 152
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=31.93 E-value=67 Score=35.41 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=36.1
Q ss_pred HHHHHHcCCCceeecccCcccc----c-C------CCC-----CCCh-----HhHHHHHHHHHHHHHcCCcceEeec
Q 015605 86 VKLMADTGLDAYRFSISWSRLI----P-N------GRG-----PVNP-----KGLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~----P-~------g~g-----~~n~-----~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
|+.+|+||++++-+.--=.-.. + . |-. .++. ..++=++++|++|.++||++|+.+-
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 7899999999998763211100 0 0 000 0111 1255689999999999999999854
No 153
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=31.67 E-value=1.4e+02 Score=31.75 Aligned_cols=106 Identities=14% Similarity=0.184 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCCceeecc-c-CcccccC-CCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCc
Q 015605 83 KEDVKLMADTGLDAYRFSI-S-WSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINR 159 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~-W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~ 159 (403)
++.+++|+++|++.+-+++ + -.++.-. ++|. + .+-..+.++.+++.|++..+.|. +++|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRgh-t---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg------------ 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRGH-T---VRDVVEATRLLRDAGLKVVYHIM-PGLPG------------ 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCC-C---HHHHHHHHHHHHHcCCeEEEEee-cCCCC------------
Confidence 6889999999998777766 2 2223322 2332 2 44467788899999998666654 55652
Q ss_pred hhHHHHHHHHHHHHH--HhC-CCcceEEEeccCccccccccccCCCCCC
Q 015605 160 TIVKDFTAYADVCFR--QFG-DRVSYWTTVNEPNAFANLGYDYGIAPPQ 205 (403)
Q Consensus 160 ~~~~~f~~ya~~~~~--~~~-~~v~~w~t~NEp~~~~~~gy~~g~~~Pg 205 (403)
++.+.+.+=++.+++ .++ |.|+.+-+.=+|......-|..|.|.|-
T Consensus 269 qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 224556666666665 354 5677776666666544444556666553
No 154
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=31.20 E-value=1.3e+02 Score=30.31 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCCceeecccCcccccCC---CCCCChHhHHHHHHHHHHHHHcCCcc-eEeeccCCCcHHHHhhhCCCCC
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQP-HVTLHHFDLPQALEDEYGGWIN 158 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g---~g~~n~~~~~~y~~~i~~l~~~gi~p-~vtL~h~~~P~~l~~~~gg~~~ 158 (403)
++.++.++++|++.+.+++ .-+.++- -|... ..+-..+.|+.+++.|+.. -+.|. +++|.
T Consensus 103 ~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg----------- 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT----------- 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 6889999999998555544 3333221 12211 1344677889999999974 45553 45552
Q ss_pred chhHHHHHHHHHHHHHHhCCCcceEEEeccCccc
Q 015605 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (403)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 192 (403)
++.+.|.+-.+.+.+.=-++|..+...=||...
T Consensus 167 -qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 -QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred -CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 246677777777776434678888888888753
No 155
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=31.19 E-value=5.2e+02 Score=25.43 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=33.0
Q ss_pred ccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccC
Q 015605 105 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF 143 (403)
Q Consensus 105 ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~ 143 (403)
+..|...+-++.+-+..++++.+.+.++|-..++=|+|-
T Consensus 62 ~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 62 RITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred CCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 444554566788999999999999999999999999994
No 156
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=30.73 E-value=93 Score=30.28 Aligned_cols=84 Identities=10% Similarity=0.114 Sum_probs=56.1
Q ss_pred HHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCC----cHHHHhhhCCCCCchh
Q 015605 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL----PQALEDEYGGWINRTI 161 (403)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~----P~~l~~~~gg~~~~~~ 161 (403)
.+.+++-+-+-=-++..|-.|-|+| .+... ...++++.++++|+++++++..++- +.-+. .-..+++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g--~~~~~---~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~---~~l~~~~~ 87 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG--TLTGL---PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAH---AVLSNPEA 87 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC--CCCCC---CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHH---HHhcCHHH
Confidence 5666776666677888999998774 33322 2468999999999999999976541 11111 11245666
Q ss_pred HHHHHHHHHHHHHHhC
Q 015605 162 VKDFTAYADVCFRQFG 177 (403)
Q Consensus 162 ~~~f~~ya~~~~~~~~ 177 (403)
.+.|++=+-.+++++|
T Consensus 88 r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 88 RQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7777776666777765
No 157
>PLN02960 alpha-amylase
Probab=30.65 E-value=81 Score=35.63 Aligned_cols=94 Identities=10% Similarity=0.199 Sum_probs=59.4
Q ss_pred cccCcHHH-HHHHHHcCCCceeeccc--------Cc-------ccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEee-
Q 015605 78 GYHKYKED-VKLMADTGLDAYRFSIS--------WS-------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL- 140 (403)
Q Consensus 78 ~y~~~~eD-i~l~~~lG~~~~R~si~--------W~-------ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL- 140 (403)
.|.-..+. ++.+|+||++++-+.-- |. .+.|. -|. .+=++.+|++|.++||.+|+.+
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~-yGt-----p~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSR-FGT-----PDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccc-cCC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 45555544 89999999999887521 11 11111 122 2448999999999999999986
Q ss_pred -ccCCC--c--HHHHh-----------h--hCCC-------CCchhHHHHHHHHHHHHHHhC
Q 015605 141 -HHFDL--P--QALED-----------E--YGGW-------INRTIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 141 -~h~~~--P--~~l~~-----------~--~gg~-------~~~~~~~~f~~ya~~~~~~~~ 177 (403)
.|+.. + .+..+ . ...| .++++.+.+.+=++.-+++|+
T Consensus 488 ~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 488 HSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 35422 1 11101 0 0112 356778888888888898886
No 158
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=30.54 E-value=1.1e+02 Score=29.97 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCccccccccc
Q 015605 119 LQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYD 198 (403)
Q Consensus 119 ~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~ 198 (403)
.+-+.+.++.++++||++.+++. +++|. ++.+.+.+=++.+.+.=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 45578899999999999777654 45552 235677777777655444678888888888765544455
Q ss_pred cCCCCC
Q 015605 199 YGIAPP 204 (403)
Q Consensus 199 ~g~~~P 204 (403)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 555543
No 159
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=30.52 E-value=3.4e+02 Score=28.41 Aligned_cols=94 Identities=19% Similarity=0.415 Sum_probs=58.5
Q ss_pred cHHH-HHHHHHcCCCceeec-------ccCcc-cccCC--CC---------CCChHhHHHHHHHHHHHHHcCCcceEeec
Q 015605 82 YKED-VKLMADTGLDAYRFS-------ISWSR-LIPNG--RG---------PVNPKGLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 82 ~~eD-i~l~~~lG~~~~R~s-------i~W~r-i~P~g--~g---------~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
++.| ++++|+|.+..+|+. -.|.. |=|.. +- +-|+-| -.++++.|+..|.+|++.+.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---t~EF~~~~e~iGaep~~avN 126 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---THEFMDWCELIGAEPYIAVN 126 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---HHHHHHHHHHhCCceEEEEe
Confidence 4666 588999999999963 24554 22321 00 112223 47899999999999999985
Q ss_pred cCCCcHHHHhhhCCCCCchhHHHHHHHHHH--------HHHHhCC----CcceEEEeccCc
Q 015605 142 HFDLPQALEDEYGGWINRTIVKDFTAYADV--------CFRQFGD----RVSYWTTVNEPN 190 (403)
Q Consensus 142 h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~--------~~~~~~~----~v~~w~t~NEp~ 190 (403)
= |. ...+....|.+||.. .=...|. .||+|.+=||..
T Consensus 127 ~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 127 L-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred c-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 2 21 222334555555532 2233443 499999999974
No 160
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=30.44 E-value=1.3e+02 Score=25.83 Aligned_cols=57 Identities=11% Similarity=0.191 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhCCC
Q 015605 119 LQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDR 179 (403)
Q Consensus 119 ~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~ 179 (403)
.+=+.-+++.|++.|++|++.+.=. -+.|. .|-| .+++..+.|.+=.+..+++.|-+
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~Pv-Ng~wy--dytG-~~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQPV-NGKWY--DYTG-LSKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-----HHHH--HHTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHHcCCceEEEecCC-cHHHH--HHhC-CCHHHHHHHHHHHHHHHHHCCCE
Confidence 5557889999999999999998411 12343 2455 45677788888888888888753
No 161
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=30.34 E-value=64 Score=23.57 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=24.8
Q ss_pred HHHHHHHHH-cCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHH
Q 015605 123 NNLINELIS-YGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYA 169 (403)
Q Consensus 123 ~~~i~~l~~-~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya 169 (403)
++.++.|.+ .||+|.+|.. .|-. +.+++.+.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~~-----VW~~------LekeN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTRF-----VWYL------LEKENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHHH-----HHHH------HHHHHHHHHHHHh
Confidence 566766654 8999998874 5543 3356778888773
No 162
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.20 E-value=55 Score=30.99 Aligned_cols=60 Identities=7% Similarity=0.011 Sum_probs=38.9
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEe
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 139 (403)
..++++-+++.+.+|++.+++........+. ....-+...+.++++.+.+.++||+..+=
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTP-PNVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 4456667899999999999986432211111 11111345667888888899999876544
No 163
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=30.20 E-value=1.4e+02 Score=30.70 Aligned_cols=108 Identities=19% Similarity=0.298 Sum_probs=65.1
Q ss_pred cHHHHHHHHHcCCC--ceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeecc---CCCc---HHHHhh-
Q 015605 82 YKEDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH---FDLP---QALEDE- 152 (403)
Q Consensus 82 ~~eDi~l~~~lG~~--~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h---~~~P---~~l~~~- 152 (403)
..+-++.+++.|+. ++=+...|..-.. .=.+|++.+.-.+++++.|+++|++.++.++- -+.+ ..-..+
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~ 122 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKE 122 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhh
Confidence 45556777766654 4445555655222 23456666666799999999999998877652 1222 111110
Q ss_pred --h-----CC----------------CCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCccc
Q 015605 153 --Y-----GG----------------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (403)
Q Consensus 153 --~-----gg----------------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 192 (403)
+ .| |.+++..+.|.+..+.+++.+| ---+|.=+|||..+
T Consensus 123 ~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 123 KGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp TT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred cCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 0 12 7789989999888888777765 34556899999975
No 164
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.18 E-value=1.4e+02 Score=29.04 Aligned_cols=106 Identities=14% Similarity=0.225 Sum_probs=55.4
Q ss_pred HHHHHHcC--CCceeecccCcccc--c---CCCC--CCChHhHHHHHHHHHHHHHcCCcceEeeccC-CC-c-HH----H
Q 015605 86 VKLMADTG--LDAYRFSISWSRLI--P---NGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHF-DL-P-QA----L 149 (403)
Q Consensus 86 i~l~~~lG--~~~~R~si~W~ri~--P---~g~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~-~~-P-~~----l 149 (403)
++.+++.| ++++=+.+.|..-- + ++-+ .+|++-+--..++|++|+++|++.++.++-. .. | .. +
T Consensus 31 ~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~ 110 (292)
T cd06595 31 MDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEM 110 (292)
T ss_pred HHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHH
Confidence 34444433 45566666664321 0 1111 3455555556888999999999888776522 11 1 01 1
Q ss_pred Hhhh-----------CCCCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCccc
Q 015605 150 EDEY-----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (403)
Q Consensus 150 ~~~~-----------gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 192 (403)
.... ..++||+..+.|.+-....+...| -.-+|.=+|||..+
T Consensus 111 ~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G-idg~W~D~~E~~~~ 163 (292)
T cd06595 111 AKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG-VDFWWLDWQQGNRT 163 (292)
T ss_pred HHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC-CcEEEecCCCCccc
Confidence 1111 135677766655443333333343 23467889999754
No 165
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=29.78 E-value=2.3e+02 Score=28.20 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCCceeecc-cCc-ccccCCCCCCChHhHHHHHHHHHHHHHcCCcce-EeeccCCCcHHHHhhhCCCCCc
Q 015605 83 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~~~ 159 (403)
++.++.++++|++.+.+++ +-+ ++... -|+.. ..+-..+.|+.+++.|+..+ ++|. +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~-lgR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg------------ 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKF-LGRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL------------ 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC------------
Confidence 6899999999999766666 443 23222 23321 14557889999999999855 5554 55662
Q ss_pred hhHHHHHHHHHHHHHHhCCCcceEEEeccCc
Q 015605 160 TIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (403)
Q Consensus 160 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 190 (403)
++.+.|.+-.+.+.+-=-++|..+...=||.
T Consensus 162 qt~~~~~~~l~~~~~l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 DNKKLLKEELKLAKELPINHLSAYSLTIEEN 192 (350)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeccceecCC
Confidence 3355666666665543234455554444554
No 166
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=29.52 E-value=1.5e+02 Score=32.51 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHH
Q 015605 121 YYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFR 174 (403)
Q Consensus 121 ~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 174 (403)
....+++.|+++|+..=+...|-.++.-+..+||. +.+..++--.+|++.|-+
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~ 263 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 263 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 34459999999999999999999999999999875 555667777777777654
No 167
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=29.41 E-value=1.8e+02 Score=31.41 Aligned_cols=93 Identities=12% Similarity=0.085 Sum_probs=54.5
Q ss_pred cHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcH----HHHh------
Q 015605 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQ----ALED------ 151 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~----~l~~------ 151 (403)
.++|+++.++.|++.+|+..+-+.+ +-....++..+++|.+..+++..-+.|. .+.+
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4566789999999999998766654 1235556666777777666664322241 1111
Q ss_pred h----------hCCCCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCcc
Q 015605 152 E----------YGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (403)
Q Consensus 152 ~----------~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 191 (403)
+ -.|-..|. ...+.++.+-++++ .--...+-|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~~~P~---~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 165 EMGCDSICIKDMAGLLTPY---AAYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HcCCCEEEECCcCCCcCHH---HHHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 0 03445543 55666666667774 2234456666543
No 168
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=28.93 E-value=43 Score=20.25 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCcc
Q 015605 122 YNNLINELISYGIQP 136 (403)
Q Consensus 122 y~~~i~~l~~~gi~p 136 (403)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 467788888899987
No 169
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=28.03 E-value=75 Score=30.26 Aligned_cols=60 Identities=7% Similarity=0.058 Sum_probs=38.8
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCcccccCCC-CCCChHhHHHHHHHHHHHHHcCCcceEee
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
-.++++-+++++++|.+.++++- .+..+... .+.-...++.++++.+.+.++||+..+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAG--YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecC--cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 34567778999999999999853 11211100 11112345677788888999999877654
No 170
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=27.39 E-value=1.1e+02 Score=33.06 Aligned_cols=57 Identities=16% Similarity=0.313 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCceeecc--cCcccc-c-------CCCCC-----------CCh----HhHHHHHHHHHHHHHcCCcceEe
Q 015605 85 DVKLMADTGLDAYRFSI--SWSRLI-P-------NGRGP-----------VNP----KGLQYYNNLINELISYGIQPHVT 139 (403)
Q Consensus 85 Di~l~~~lG~~~~R~si--~W~ri~-P-------~g~g~-----------~n~----~~~~~y~~~i~~l~~~gi~p~vt 139 (403)
-++.+|+||++++-+.- +..-+. . -|-.. .|+ ...+=+++||++|.++||++|+.
T Consensus 169 ~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilD 248 (605)
T TIGR02104 169 GLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMD 248 (605)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEE
Confidence 38999999999998753 111110 0 00000 011 12456999999999999999998
Q ss_pred ec
Q 015605 140 LH 141 (403)
Q Consensus 140 L~ 141 (403)
+-
T Consensus 249 vV 250 (605)
T TIGR02104 249 VV 250 (605)
T ss_pred EE
Confidence 53
No 171
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.27 E-value=1.7e+02 Score=28.14 Aligned_cols=73 Identities=10% Similarity=0.007 Sum_probs=51.1
Q ss_pred CCCcccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHH
Q 015605 75 ACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALE 150 (403)
Q Consensus 75 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~ 150 (403)
.++..+...+=.+.+|++|+..+|-+..=+|--|.+--.+-+ +.++.+-+.+.+.||..+.+.++-.....+.
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGE---EGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHH---HHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 344556666777889999999999998667776653111224 4466677778999999999998755555443
No 172
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.21 E-value=1.8e+02 Score=28.37 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=44.7
Q ss_pred cHHHHHHHHHcCCCceeeccc----CcccccC---CCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHH
Q 015605 82 YKEDVKLMADTGLDAYRFSIS----WSRLIPN---GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQAL 149 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~----W~ri~P~---g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l 149 (403)
.++=|+.|+.+|+|.+-+=++ ++. .|. +.|.+.++. ++++++.++++||+++.-+ |+|.-+
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~ 86 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI---QTLGHL 86 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHH
Confidence 677899999999999887443 322 133 146677655 6999999999999999876 455443
No 173
>PRK09936 hypothetical protein; Provisional
Probab=27.03 E-value=5.3e+02 Score=25.35 Aligned_cols=62 Identities=16% Similarity=0.286 Sum_probs=45.0
Q ss_pred CcHHHHHHHHHcCCCceeecccCccc-ccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHh
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSRL-IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED 151 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri-~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~ 151 (403)
.|++=++.++.+|++++= +-|++. +.+ -|.- + .+..+.++...+.||+.+|.|+ +| |.|.+.
T Consensus 39 qWq~~~~~~~~~G~~tLi--vQWt~yG~~~-fg~~--~--g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 39 QWQGLWSQLRLQGFDTLV--VQWTRYGDAD-FGGQ--R--GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHHHcCCcEEE--EEeeeccCCC-cccc--h--HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 356667889999999864 578888 111 1222 2 3689999999999999999997 44 555543
No 174
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=27.03 E-value=2.6e+02 Score=26.50 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=37.1
Q ss_pred cCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHc-CCcceE
Q 015605 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISY-GIQPHV 138 (403)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~-gi~p~v 138 (403)
..+++-+++++++|++.+=+.+......+. ...+.+ ..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~--~~~~~~---~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS--RPLKKE---RAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC--CCCCHH---HHHHHHHHHHHcCCCcEEE
Confidence 678999999999999999888876654433 112433 456666667777 555443
No 175
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=26.40 E-value=4.9e+02 Score=26.42 Aligned_cols=95 Identities=20% Similarity=0.201 Sum_probs=53.4
Q ss_pred cccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceE-eeccCCCcHHHHhhhCCC
Q 015605 78 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV-TLHHFDLPQALEDEYGGW 156 (403)
Q Consensus 78 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~v-tL~h~~~P~~l~~~~gg~ 156 (403)
..-...+-++.++++|++.+=+ ....+.|-+ -...+.. ...+++=+.|.++||++.. |..-+..|.+ +.|++
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~--~~~dl~P~~-~~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~l 102 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTF--HDDDLIPFG-APPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGF 102 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEe--cccccCCCC-CChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCC
Confidence 3345688899999999998854 334455552 1111111 2367777889999999654 4322323433 22778
Q ss_pred CCchh--HHHHHHHHHH---HHHHhCCC
Q 015605 157 INRTI--VKDFTAYADV---CFRQFGDR 179 (403)
Q Consensus 157 ~~~~~--~~~f~~ya~~---~~~~~~~~ 179 (403)
.+++- .+.=.++.+. ++..+|-+
T Consensus 103 as~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 103 TSNDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77533 2222222232 35667653
No 176
>PTZ00445 p36-lilke protein; Provisional
Probab=26.32 E-value=1.1e+02 Score=28.72 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=39.8
Q ss_pred HHHHHHcCCCceeecccCcccccCCCCCCChH---------hHHHHHHHHHHHHHcCCcceEeec
Q 015605 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPK---------GLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~---------~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
++++++.|++++=+.++=+-|---..|..++. +=.-...++.+|+++||...|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 57899999999988877665542211323322 334478899999999999988775
No 177
>PLN03153 hypothetical protein; Provisional
Probab=25.71 E-value=69 Score=33.90 Aligned_cols=68 Identities=26% Similarity=0.320 Sum_probs=38.5
Q ss_pred HHHcC-CcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHH----HHHHHHh--CCCcceEEEeccCccccccccccCC
Q 015605 129 LISYG-IQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYA----DVCFRQF--GDRVSYWTTVNEPNAFANLGYDYGI 201 (403)
Q Consensus 129 l~~~g-i~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya----~~~~~~~--~~~v~~w~t~NEp~~~~~~gy~~g~ 201 (403)
+.+.| +.|+|+||||+.=. --|-+-...+.++.|..=| ..++++. +|+..-|..- ...||....
T Consensus 327 ~les~p~~P~vSlHH~~~~~---p~fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fs------vSwGysV~~ 397 (537)
T PLN03153 327 LLSSHPIAPFVSIHHVEAVD---PFYPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFS------ISLGYVVQV 397 (537)
T ss_pred HhhcCCCCCceeeeeccccc---cccCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEE------EeccEEEEE
Confidence 44555 99999999998611 1122223345566665433 2223443 5666666543 556887766
Q ss_pred CCCC
Q 015605 202 APPQ 205 (403)
Q Consensus 202 ~~Pg 205 (403)
++-+
T Consensus 398 y~~~ 401 (537)
T PLN03153 398 FPSI 401 (537)
T ss_pred ecCC
Confidence 6544
No 178
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=25.40 E-value=1.8e+02 Score=22.28 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=31.6
Q ss_pred HHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEee
Q 015605 87 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 87 ~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
+.++.+|+.++|-| . +..+.+-+++++..|+ .|....+|.
T Consensus 27 ~~~~~~G~~~iRGS--------s-----~rgg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS--------S-----SRGGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC--------C-----CCcHHHHHHHHHHHHH-CCCeEEEeC
Confidence 67789999999999 2 2345667899999999 777777776
No 179
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=25.36 E-value=75 Score=27.77 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=40.4
Q ss_pred cCCCcccCcHHHHHH-HHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcce
Q 015605 74 IACDGYHKYKEDVKL-MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH 137 (403)
Q Consensus 74 ~a~d~y~~~~eDi~l-~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~ 137 (403)
.+|......++|++. ++++|+..+++.+.|+--- ..+.+.++| -..|+++||.|=
T Consensus 36 ~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~W--t~d~it~~g-------r~~l~~~giapp 91 (146)
T TIGR02159 36 SGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPW--TTDWITEDA-------REKLREYGIAPP 91 (146)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCC--ChHHCCHHH-------HHHHHhcCccCC
Confidence 467777788888854 6778999999988887543 235566555 467899999984
No 180
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=24.93 E-value=2.4e+02 Score=28.99 Aligned_cols=91 Identities=12% Similarity=0.221 Sum_probs=53.0
Q ss_pred cHHHHHHHHHcCCCceeecc-cCc-ccccC-CCCCCChHhHHHHHHHHHHHHHcCCcce-EeeccCCCcHHHHhhhCCCC
Q 015605 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPN-GRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWI 157 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~-ri~P~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~ 157 (403)
-++.+++|+++|++.+.+++ +=+ ++... +++. + .+-..+.|+.|++.|+..+ ++|. +++|.
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~-~---~~~~~~ai~~l~~~g~~~i~~dlI-~GlP~---------- 204 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQ-K---RADVHQALEWIRAAGFPILNIDLI-YGIPG---------- 204 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCC-C---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 36889999999999666665 221 22222 2322 3 4567889999999999864 4543 45663
Q ss_pred CchhHHHHHHHHHHHHHHhC-CCcceEEEeccCc
Q 015605 158 NRTIVKDFTAYADVCFRQFG-DRVSYWTTVNEPN 190 (403)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~~~-~~v~~w~t~NEp~ 190 (403)
++.+.|.+=.+.+.+ ++ +.+..+...=+|+
T Consensus 205 --qt~e~~~~~l~~~~~-l~~~~is~y~L~~~~~ 235 (430)
T PRK08208 205 --QTHASWMESLDQALV-YRPEELFLYPLYVRPL 235 (430)
T ss_pred --CCHHHHHHHHHHHHh-CCCCEEEEccccccCC
Confidence 234455555555543 33 3444443333343
No 181
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=24.80 E-value=49 Score=31.87 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCCCEEEecCCCC
Q 015605 373 LGLQRVLEHFKQLYGNPPMYIHENGSL 399 (403)
Q Consensus 373 ~GL~~~L~~v~~rY~~~PI~ITENG~~ 399 (403)
-||--++.. .+| +.|++|||.|+=
T Consensus 184 Agl~g~~~k--~~~-g~P~lLTEHGIY 207 (268)
T PF11997_consen 184 AGLLGALAK--YRY-GRPFLLTEHGIY 207 (268)
T ss_pred HHHHHHHHH--HHh-CCCEEEecCCcc
Confidence 477766543 456 489999999983
No 182
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=24.80 E-value=9.9e+02 Score=26.59 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=84.0
Q ss_pred cccccCCCCCCChHhHHHHHHHHHHHHHc-CCcceEeeccCCC-----cHHHHh----hhCCCC----------------
Q 015605 104 SRLIPNGRGPVNPKGLQYYNNLINELISY-GIQPHVTLHHFDL-----PQALED----EYGGWI---------------- 157 (403)
Q Consensus 104 ~ri~P~g~g~~n~~~~~~y~~~i~~l~~~-gi~p~vtL~h~~~-----P~~l~~----~~gg~~---------------- 157 (403)
.++.|...|-++.+-++.++++.+.+.++ |-+.++=|.|-+- +.|... ..++|.
T Consensus 459 g~~~~~~~~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p 538 (765)
T PRK08255 459 GRITPGCPGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVP 538 (765)
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCC
Confidence 45666556778999999999999999999 6899999998321 111100 002221
Q ss_pred -------CchhHHHHHHHHHHHHHHhC-CCcceEEEeccCccccccccccCCC-CCCC--CCCccccCCCCCCChhHHHH
Q 015605 158 -------NRTIVKDFTAYADVCFRQFG-DRVSYWTTVNEPNAFANLGYDYGIA-PPQR--CSSINHCSRGNSSTEPYITV 226 (403)
Q Consensus 158 -------~~~~~~~f~~ya~~~~~~~~-~~v~~w~t~NEp~~~~~~gy~~g~~-~Pg~--~~~~~~~~~~~~~~~~~~~~ 226 (403)
=.++++.|++=|+.+.+ -| |-|. +.+-.||+...| .|-. +.+. . |. .+
T Consensus 539 ~~mt~~eI~~~i~~f~~aA~~a~~-aGfDgve---------ih~ahGyLl~qFlsp~~N~RtD~---y-GG-------sl 597 (765)
T PRK08255 539 REMTRADMDRVRDDFVAAARRAAE-AGFDWLE---------LHCAHGYLLSSFISPLTNQRTDE---Y-GG-------SL 597 (765)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EecccchHHHHhcCCCCCCCCCC---C-CC-------CH
Confidence 01357777776665544 34 3232 334557776654 3432 1110 0 11 12
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCCccccCCCCHHHH-HHHHHH
Q 015605 227 HHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLTNSTEDA-IATQRY 277 (403)
Q Consensus 227 hn~llAHa~A~~~~r~~~~~~~~g~VG~~~~~~~~~P~~~~~~D~-~aa~r~ 277 (403)
-|-+.--.+.++.+|+..+. +-.||+-++...+.+..-+++|. ..++..
T Consensus 598 enR~r~~~eiv~~ir~~~~~--~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l 647 (765)
T PRK08255 598 ENRLRYPLEVFRAVRAVWPA--EKPMSVRISAHDWVEGGNTPDDAVEIARAF 647 (765)
T ss_pred HHHhHHHHHHHHHHHHhcCC--CCeeEEEEccccccCCCCCHHHHHHHHHHH
Confidence 34444455677888886532 23588888765444433345553 344443
No 183
>PF15240 Pro-rich: Proline-rich
Probab=24.64 E-value=62 Score=29.29 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHhhhhcccccccCCC
Q 015605 2 MLRLSFLLMYLLNLATSALTAVEYSKNDF 30 (403)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 30 (403)
|| +|||..+||||.+.-.+.++++...+
T Consensus 1 ML-lVLLSvALLALSSAQ~~dEdv~~e~~ 28 (179)
T PF15240_consen 1 ML-LVLLSVALLALSSAQSTDEDVSQEES 28 (179)
T ss_pred Ch-hHHHHHHHHHhhhccccccccccccC
Confidence 44 45666777777653333344444443
No 184
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=24.59 E-value=2.8e+02 Score=26.48 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=42.2
Q ss_pred CCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCcceE
Q 015605 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYW 183 (403)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w 183 (403)
+|.+|.++ +++.|+.|.+.|+..++.+-+- |-. ..-+.+...+..+.+.++-++++..+
T Consensus 15 dg~iD~~~---~~~~i~~l~~~Gv~gl~v~Gst----------GE~-~~lt~~Er~~l~~~~~~~~~~~~~vi 73 (284)
T cd00950 15 DGSVDFDA---LERLIEFQIENGTDGLVVCGTT----------GES-PTLSDEEHEAVIEAVVEAVNGRVPVI 73 (284)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCCC----------cch-hhCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 58999666 7899999999999999877431 111 12235677777888888877777643
No 185
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=24.41 E-value=69 Score=33.24 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCceeecccCcccccC---CCCC-CChHhHHHHHHHHHHHHHcCCc-ceEeeccCCCcHHHHhhhCCCC
Q 015605 83 KEDVKLMADTGLDAYRFSISWSRLIPN---GRGP-VNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWI 157 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~---g~g~-~n~~~~~~y~~~i~~l~~~gi~-p~vtL~h~~~P~~l~~~~gg~~ 157 (403)
++.+++|+++|++.+-+++ ...-++ .-+. .+ .+...+.++.|++.|++ +-+.|. +++|.
T Consensus 151 ~e~l~~lk~~G~~risiGv--qS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlPg---------- 214 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV--QDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLPK---------- 214 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCCC----------
Confidence 7889999999998555555 333222 0122 23 45678999999999997 334442 45553
Q ss_pred CchhHHHHHHHHHHHHH
Q 015605 158 NRTIVKDFTAYADVCFR 174 (403)
Q Consensus 158 ~~~~~~~f~~ya~~~~~ 174 (403)
++.+.|.+-.+.+.+
T Consensus 215 --qt~e~~~~tl~~~~~ 229 (455)
T TIGR00538 215 --QTKESFAKTLEKVAE 229 (455)
T ss_pred --CCHHHHHHHHHHHHh
Confidence 235566666665555
No 186
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=24.20 E-value=2.3e+02 Score=26.92 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCC--CceeecccCcccccCCCC--CCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCC
Q 015605 83 KEDVKLMADTGL--DAYRFSISWSRLIPNGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (403)
Q Consensus 83 ~eDi~l~~~lG~--~~~R~si~W~ri~P~g~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~ 158 (403)
.+-++.+++.|+ +++=+.+.|..-. +.- .+|++.+.--+++|+.|+++|++.++.+. |.-
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~~--~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~v---------- 90 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDGY--GDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PYI---------- 90 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccCC--ceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hhH----------
Confidence 445566666444 4666666665432 223 45665566678999999999999998774 321
Q ss_pred chhHHHHHHHHHHHHHHhCCCcceEEEeccCccc
Q 015605 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (403)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 192 (403)
.+.|.+..+.+....| ---+|+=+|||...
T Consensus 91 ---~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 120 (265)
T cd06589 91 ---REWWAEVVKKLLVSLG-VDGFWTDMGEPSPG 120 (265)
T ss_pred ---HHHHHHHHHHhhccCC-CCEEeccCCCCCcC
Confidence 4566665554433333 24456889999854
No 187
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=24.09 E-value=1.6e+02 Score=28.72 Aligned_cols=62 Identities=16% Similarity=0.372 Sum_probs=45.1
Q ss_pred cHHHHHHHHHcCCCceeeccc----Ccc---cccC------------CCCCCChHhHHHHHHHHHHHHHcCCcceEeecc
Q 015605 82 YKEDVKLMADTGLDAYRFSIS----WSR---LIPN------------GRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~----W~r---i~P~------------g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h 142 (403)
.++-|+.|+..++|.+.+-++ |+- ..|+ +.|.+.++- .+++++.++++||++|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~d---i~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQ---LKDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHH---HHHHHHHHHHcCCEEEEec--
Confidence 567799999999999988776 521 1232 124566544 6999999999999999877
Q ss_pred CCCcHHH
Q 015605 143 FDLPQAL 149 (403)
Q Consensus 143 ~~~P~~l 149 (403)
|+|...
T Consensus 93 -D~PGH~ 98 (303)
T cd02742 93 -DMPGHS 98 (303)
T ss_pred -cchHHH
Confidence 666543
No 188
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=23.87 E-value=30 Score=33.03 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=39.7
Q ss_pred HHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCcceEEEeccCccccccccccCCCC
Q 015605 128 ELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAP 203 (403)
Q Consensus 128 ~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~ 203 (403)
-+.++.+.|+++||||+.=.. -+-+....+.++.+.+=|+.--.++-.+-.-|---....+.+..||..-.++
T Consensus 76 ~~~a~~~~pl~SlHH~~~~~P---ifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 76 FLEAHPLAPLVSLHHWDSVDP---IFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred eeecCCCCceeeeeehhhccc---cCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 345567899999999986322 2345555566777666444333333221111112222234456788877664
No 189
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=23.82 E-value=86 Score=34.49 Aligned_cols=64 Identities=23% Similarity=0.527 Sum_probs=42.9
Q ss_pred ccCcHHH-HHHHHHcCCCceeec----c-----cCcc-----cccCCC-CCCC-hHhHHHHHHHHHHHHHcCCcceEeec
Q 015605 79 YHKYKED-VKLMADTGLDAYRFS----I-----SWSR-----LIPNGR-GPVN-PKGLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 79 y~~~~eD-i~l~~~lG~~~~R~s----i-----~W~r-----i~P~g~-g~~n-~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
|.-+.|+ +..+|+||.|++-+= . +|.= .-|.++ |..+ +.-+.=.+.||+++.+.||++++..-
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 8888888 999999999998732 1 2211 012211 1111 11245589999999999999999876
Q ss_pred c
Q 015605 142 H 142 (403)
Q Consensus 142 h 142 (403)
|
T Consensus 333 ~ 333 (757)
T KOG0470|consen 333 H 333 (757)
T ss_pred h
Confidence 5
No 190
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=23.77 E-value=3.6e+02 Score=26.69 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCcceEeeccC---C--CcHHHHhh-------------h--------C---CCCCchhHHHHHHHHHHH
Q 015605 122 YNNLINELISYGIQPHVTLHHF---D--LPQALEDE-------------Y--------G---GWINRTIVKDFTAYADVC 172 (403)
Q Consensus 122 y~~~i~~l~~~gi~p~vtL~h~---~--~P~~l~~~-------------~--------g---g~~~~~~~~~f~~ya~~~ 172 (403)
-.++|++|+++|++.++.+.-+ + .|..-+.+ + + .|+||++.+.|.+.-+.+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHH
Confidence 4789999999999987655422 1 22221110 0 1 367899999887766665
Q ss_pred HHHhCCCcceEEEeccCccc
Q 015605 173 FRQFGDRVSYWTTVNEPNAF 192 (403)
Q Consensus 173 ~~~~~~~v~~w~t~NEp~~~ 192 (403)
. ..| ---+|+=+|||..+
T Consensus 146 ~-~~G-vdg~w~D~~Ep~~~ 163 (339)
T cd06604 146 V-DLG-VDGIWNDMNEPAVF 163 (339)
T ss_pred h-hCC-CceEeecCCCcccc
Confidence 5 233 23456889999865
No 191
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=23.74 E-value=1.7e+02 Score=26.99 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=54.9
Q ss_pred HHHHHH----HHHcCCCceeecccCcccccC-CCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCC
Q 015605 83 KEDVKL----MADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI 157 (403)
Q Consensus 83 ~eDi~l----~~~lG~~~~R~si~W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~ 157 (403)
++|++. +++.|++.+|+.++=+..... .-+.--++.++...+.++.+++.|++..+++-+. +
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~-----------~-- 132 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDA-----------S-- 132 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTT-----------G--
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcccc-----------c--
Confidence 455555 456999999999866653322 1233345678889999999999999998777442 1
Q ss_pred CchhHHHHHHHHHHHHHH
Q 015605 158 NRTIVKDFTAYADVCFRQ 175 (403)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~ 175 (403)
+...+.+.++++.+.+.
T Consensus 133 -~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 133 -RTDPEELLELAEALAEA 149 (237)
T ss_dssp -GSSHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHc
Confidence 12256777888888666
No 192
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=23.55 E-value=2.4e+02 Score=28.34 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=59.2
Q ss_pred CCcccCcHHHHHHHHHcCCCceeecccCcccccC------CCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHH
Q 015605 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPN------GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQAL 149 (403)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~------g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l 149 (403)
++.+-.-++=++.+.++|++-+-+|++ -+-|. |...+| +++-.++.+.+.+.||..+++ |.|+
T Consensus 197 Tng~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G~~dYd---v~kvle~aE~i~~a~idvlIa------Pv~l 265 (414)
T COG2100 197 TNGVLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAGRKDYD---VKKVLEVAEYIANAGIDVLIA------PVWL 265 (414)
T ss_pred eCceeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcCccccC---HHHHHHHHHHHHhCCCCEEEe------eeec
Confidence 334555567789999999997777763 33343 223566 788899999999999999876 6777
Q ss_pred HhhhCCCCCchhHHHHHHHHHHHH
Q 015605 150 EDEYGGWINRTIVKDFTAYADVCF 173 (403)
Q Consensus 150 ~~~~gg~~~~~~~~~f~~ya~~~~ 173 (403)
-| .|.+-...+.+||+.+-
T Consensus 266 ----PG-~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 ----PG-VNDDEMPKIIEWAREIG 284 (414)
T ss_pred ----CC-cChHHHHHHHHHHHHhC
Confidence 24 45555788888988764
No 193
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=23.51 E-value=1.5e+02 Score=28.41 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=32.7
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHH
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINEL 129 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l 129 (403)
.....+||+.++++|++.+=|++- -| +|.+|.+. ..++++.+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L----~~--dg~vD~~~---~~~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVL----DV--DGHVDMPR---MRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE----CC--CCCcCHHH---HHHHHHHh
Confidence 455788999999999999999974 12 58899655 57777776
No 194
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=23.51 E-value=96 Score=25.87 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCceeeccc-Cccc-ccCCCCCCChHhHHHHHHHHHHHHHcCCcceE
Q 015605 83 KEDVKLMADTGLDAYRFSIS-WSRL-IPNGRGPVNPKGLQYYNNLINELISYGIQPHV 138 (403)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~-W~ri-~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~v 138 (403)
++.++.++++|++.+++|++ -+.- ..+--+ ....++...+.++.|+++|+.++.
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~~~ 145 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPRVI 145 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSETEE
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCcEE
Confidence 89999999999999999983 3221 111001 123367788999999999999633
No 195
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=23.49 E-value=81 Score=29.15 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=7.5
Q ss_pred CCCeeeeecch
Q 015605 32 PGFLFGASTSA 42 (403)
Q Consensus 32 ~~FlwG~Atsa 42 (403)
+.|-|.++.++
T Consensus 26 ~~~~W~~~~~~ 36 (216)
T PF11153_consen 26 PYFEWRFGVAA 36 (216)
T ss_pred CCCccEEEEec
Confidence 56777777764
No 196
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=23.39 E-value=1.1e+02 Score=26.42 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=40.3
Q ss_pred cHHHHHHHHHcCCCceeecccCcccc-cCCCCCCChHhHHHHHHHHHHHHHcCCcceEeec
Q 015605 82 YKEDVKLMADTGLDAYRFSISWSRLI-PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~-P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
-+++++.|+++|+..+.+|++-..-. -.-.. -....++..-+.|+.+.++|+...+++.
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i 146 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTLL 146 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEEE
Confidence 47999999999999999999544321 11000 0112256788888999998888777663
No 197
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=23.34 E-value=2e+02 Score=28.56 Aligned_cols=62 Identities=19% Similarity=0.348 Sum_probs=43.8
Q ss_pred cHHHHHHHHHcCCCceeeccc----C-------cccccCC---------CCCCChHhHHHHHHHHHHHHHcCCcceEeec
Q 015605 82 YKEDVKLMADTGLDAYRFSIS----W-------SRLIPNG---------RGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~----W-------~ri~P~g---------~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (403)
.++-|+.|+..++|.+-+-++ | +++-..| .|.+.++ =++++++.++++||++|.-+
T Consensus 20 lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~---di~elv~yA~~rgI~vIPEi- 95 (329)
T cd06568 20 VKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQE---DYKDIVAYAAERHITVVPEI- 95 (329)
T ss_pred HHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHH---HHHHHHHHHHHcCCEEEEec-
Confidence 567789999999999877663 2 2222111 1335543 37999999999999999887
Q ss_pred cCCCcHHH
Q 015605 142 HFDLPQAL 149 (403)
Q Consensus 142 h~~~P~~l 149 (403)
|+|...
T Consensus 96 --D~PGH~ 101 (329)
T cd06568 96 --DMPGHT 101 (329)
T ss_pred --CCcHHH
Confidence 677654
No 198
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.30 E-value=2e+02 Score=27.03 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=36.9
Q ss_pred cHHHHHHHHHcCCCceeecccCcccccCCC--CCCChHhHHHHHHHHHHHHHcCCcceEe-eccCCCc
Q 015605 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVT-LHHFDLP 146 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g~--g~~n~~~~~~y~~~i~~l~~~gi~p~vt-L~h~~~P 146 (403)
.++=|++++++|.+.+++...+ . |.+. .+.-....+..+++.+.+.++||+..+= +.|++.|
T Consensus 87 ~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 4666789999999998864322 2 2211 1111223455567777778899886664 3455444
No 199
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.19 E-value=2.2e+02 Score=26.85 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=41.6
Q ss_pred ccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhC
Q 015605 107 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFG 177 (403)
Q Consensus 107 ~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 177 (403)
.|-|.|.+| |..++..|++.|-+..+++-+|.-+. -...+.+....+|.+.++++.|
T Consensus 226 ~p~G~G~id------~~~~~~~L~~~gy~G~~~~E~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~ 282 (284)
T PRK13210 226 VPFGEGCVD------FVGIFKTLKELNYRGPFLIEMWTEKA--------EEPRAEIKQARRFLEPLMEEAG 282 (284)
T ss_pred ccCCCcccC------HHHHHHHHHHcCCCceEEEEEecCcc--------cCHHHHHHHHHHHHHHHHHHhc
Confidence 355688888 68899999999999889998764321 0123457777888888887765
No 200
>PHA02152 hypothetical protein
Probab=23.14 E-value=43 Score=26.11 Aligned_cols=36 Identities=36% Similarity=0.562 Sum_probs=23.8
Q ss_pred ccCC-cCCCCCCCccceeecccCCCCCCCCcCCCcccCcHHHHHHHHHc
Q 015605 45 VEGA-ANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADT 92 (403)
Q Consensus 45 vEG~-~~~~gkg~s~wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~l 92 (403)
|||+ |.+.|+-..-|..|...|+. -|+||.+.|+.+
T Consensus 42 v~g~~~g~~~~~~~ew~~fissgr~------------~~~~dy~km~~i 78 (96)
T PHA02152 42 VNGARFGEENKPVAEWFYFISSGRV------------YFKEDYDKMATI 78 (96)
T ss_pred hcccchhhcCCchhhhhhhhhcchh------------hHHhhHHHHHHH
Confidence 6777 44667777778777655543 467888888753
No 201
>PRK07094 biotin synthase; Provisional
Probab=22.72 E-value=1.4e+02 Score=29.14 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHcCCCceeecccC--cccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEee
Q 015605 81 KYKEDVKLMADTGLDAYRFSISW--SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W--~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
.-+|+++.|+++|++.+-++++= .++...=....+ .+.+.+.++.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s---~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMS---FENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeecceE
Confidence 45789999999999999988842 234332111122 5668899999999999765544
No 202
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=22.67 E-value=3.6e+02 Score=25.86 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=43.3
Q ss_pred CCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCcceEEE
Q 015605 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTT 185 (403)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t 185 (403)
+|++|.++ ++++++.+.+.|+..++.+-+- |-+ ..-+.+...+..+.+++.-+++++.+.-
T Consensus 13 ~g~iD~~~---~~~~i~~l~~~Gv~Gi~~~Gst----------GE~-~~Ls~~Er~~~~~~~~~~~~~~~~vi~g 73 (285)
T TIGR00674 13 DGSVDFAA---LEKLIDFQIENGTDAIVVVGTT----------GES-PTLSHEEHKKVIEFVVDLVNGRVPVIAG 73 (285)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECccC----------ccc-ccCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 58999665 7999999999999999887431 111 1122566777778888887887775543
No 203
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=22.66 E-value=1.2e+02 Score=27.92 Aligned_cols=50 Identities=20% Similarity=0.385 Sum_probs=31.9
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeecc
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h 142 (403)
.....+||+.++++|++.+=|+.- -+ +|.+|.+. .+++++.+. |+-..+|
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L-----~~-dg~iD~~~---~~~Li~~a~-----~~~~tFH 120 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGAL-----TE-DGEIDEEA---LEELIEAAG-----GMPVTFH 120 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--B-----ET-TSSB-HHH---HHHHHHHHT-----TSEEEE-
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeE-----CC-CCCcCHHH---HHHHHHhcC-----CCeEEEe
Confidence 345788999999999999999862 22 57899554 577777654 5555556
No 204
>PRK09389 (R)-citramalate synthase; Provisional
Probab=22.59 E-value=2.4e+02 Score=29.77 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=48.2
Q ss_pred cHHHHHHHHHcCCCceeecccCcccccCC-CCCCChHhHHHHHHHHHHHHHcCCcceEeecc
Q 015605 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h 142 (403)
-++|++.+.+.|++.+++.++-|.+.-+- -+.--++.++...+.+..+++.|+++.+++-.
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed 136 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGED 136 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 38999999999999999999877764220 12334567888999999999999998888764
No 205
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=22.56 E-value=1.5e+02 Score=26.80 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=46.6
Q ss_pred CcCCCcccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEe
Q 015605 73 DIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (403)
Q Consensus 73 ~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 139 (403)
.+|.|.+-.-...+..+..+.++.++++.++-+-... |.......+.+++.++..|++++++
T Consensus 148 ~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 148 RIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQT-----DPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred EEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhcc-----ChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 4577777666778888999999999998877654433 2333556888999999999998876
No 206
>PF06777 DUF1227: Protein of unknown function (DUF1227); InterPro: IPR010643 This domain represents a conserved region within a number of eukaryotic DNA repair helicases.; GO: 0005634 nucleus
Probab=22.17 E-value=1.6e+02 Score=25.76 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCCcce--EeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCcceEEEecc
Q 015605 120 QYYNNLINELISYGIQPH--VTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNE 188 (403)
Q Consensus 120 ~~y~~~i~~l~~~gi~p~--vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NE 188 (403)
+=|+++++.|++.++..- ..+.+=-+|..+.++ .=-.|=...++|..|-+++++-++.+++--.+..|
T Consensus 16 ~EY~rLV~GL~~~~~~~~~d~~~~npvLp~dil~e-aVPGnIR~AeHFv~flkR~veylk~rlrv~~v~~e 85 (146)
T PF06777_consen 16 DEYDRLVEGLREAEIARETDEILANPVLPDDILKE-AVPGNIRRAEHFVAFLKRFVEYLKTRLRVQHVISE 85 (146)
T ss_pred HHHHHHHHHHHHhccccccchhhcCCCCchhhhhh-cCCchHHhHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 359999999999986543 224445567666543 11223344789999999999999998877777776
No 207
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=22.13 E-value=99 Score=21.78 Aligned_cols=22 Identities=23% Similarity=0.233 Sum_probs=12.8
Q ss_pred ChhHHHHHHHHHHHHH---hhhhcc
Q 015605 1 MMLRLSFLLMYLLNLA---TSALTA 22 (403)
Q Consensus 1 ~~~~~~~~~~~~~~~~---~~~~~~ 22 (403)
||-|++.+++.++.++ ..|++.
T Consensus 1 MmKk~i~~i~~~l~~~~~l~~CnTv 25 (48)
T PRK10081 1 MVKKTIAAIFSVLVLSTVLTACNTT 25 (48)
T ss_pred ChHHHHHHHHHHHHHHHHHhhhhhh
Confidence 7777776666555543 345443
No 208
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=22.11 E-value=4.4e+02 Score=26.38 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=55.5
Q ss_pred cHHHHHHHHHcCCCceeecc-cCc-ccccCCCCC-CChHhHHHHHHHHHHHHHcCCc-ceEeeccCCCcHHHHhhhCCCC
Q 015605 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGP-VNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWI 157 (403)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~-ri~P~g~g~-~n~~~~~~y~~~i~~l~~~gi~-p~vtL~h~~~P~~l~~~~gg~~ 157 (403)
-++.+++|+++|++.+.+++ +-+ ++... -|. .+ .+...+.++.+++.|+. +.++|- +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~-l~R~~s---~~~~~~a~~~l~~~g~~~v~~dli-~GlPg---------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAV-LDRTHT---PGRAVAAAREARAAGFEHVNLDLI-YGTPG---------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ccCCC----------
Confidence 36889999999998665555 222 12211 122 23 45577889999999998 555553 45552
Q ss_pred CchhHHHHHHHHHHHHHHhCCCcceEEEeccCccc
Q 015605 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (403)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 192 (403)
++.+.|.+=.+.+.+.=-+.|..+...=||...
T Consensus 172 --qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~ 204 (375)
T PRK05628 172 --ESDDDWRASLDAALEAGVDHVSAYALIVEDGTA 204 (375)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCCh
Confidence 234566555555554323556655544566643
No 209
>PRK06256 biotin synthase; Validated
Probab=21.61 E-value=1.3e+02 Score=29.59 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHcCCCceeecccCcc-cccCCCCCCChHhHHHHHHHHHHHHHcCCcceEee
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~r-i~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
.-+|.++.|+++|++.+-++++=++ +.+.-...- .++...+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~---t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTH---TYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCC---CHHHHHHHHHHHHHcCCeeccCe
Confidence 4578899999999999888763132 333311111 25667889999999999765443
No 210
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=21.53 E-value=2.3e+02 Score=25.48 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=45.5
Q ss_pred ccCcHHHHHHHHHcCCCceeecc--cCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCC
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL 145 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si--~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~ 145 (403)
...|++-++...+.|.+.+|..- .|.- .. +.+.+..|...+|.+.... |+..|+.+|.
T Consensus 104 i~~~~~~~~~a~~~G~~~lRv~ge~~w~~-----~~--~~~~l~~yE~~ln~~~~~~--~~~~lC~Yd~ 163 (191)
T PF14417_consen 104 IAFWRAALEQALAEGYRGLRVIGEMTWAL-----RS--GWEELLRYEALLNRLFAEH--PFTALCAYDR 163 (191)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEechhhc-----cc--cHHHHHHHHHHHHHHhcCC--CEEEEeccch
Confidence 34466667888888999999986 4542 22 6778999999999999888 9999987765
No 211
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=21.45 E-value=1.4e+02 Score=26.96 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=49.0
Q ss_pred CCcCCCcccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEee
Q 015605 72 GDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 72 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
..++.|++-.-..+++.+.++..+.++++-++.+-... |.......+.++..++..|++++++=
T Consensus 146 ~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 146 VRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIET-----DPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhc-----ChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 34688888888999999999999999998766554322 23345667888899999999888763
No 212
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=21.45 E-value=71 Score=28.25 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=40.2
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCcccccCC-CCCCChHhHHHHHHHHHHHHHcCCcceEe
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVT 139 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 139 (403)
....++-+++++.+|++.+++...+-...+.. ...--....+.++++.+.+.++|+++.+=
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEe
Confidence 45678889999999999999997641111110 00111234567788888888999775543
No 213
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=21.25 E-value=2.3e+02 Score=28.67 Aligned_cols=94 Identities=17% Similarity=0.333 Sum_probs=56.5
Q ss_pred HcCCCceeecccCcccccCCCCCCChHhHHHHHHHH--HHHHHcCCcceEeeccCCCcHHHHhh---hCC---CCCchhH
Q 015605 91 DTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLI--NELISYGIQPHVTLHHFDLPQALEDE---YGG---WINRTIV 162 (403)
Q Consensus 91 ~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i--~~l~~~gi~p~vtL~h~~~P~~l~~~---~gg---~~~~~~~ 162 (403)
++|++..|+.|.=.+.--. |..|. +|+++= ...+..|+.++.+- |..|.|.-.. .|| =+.++.-
T Consensus 77 ~lg~si~Rv~I~~ndfsl~--g~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~e~Y 148 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG--GSADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKYEKY 148 (433)
T ss_pred ccCceEEEEEecccccccC--CCcch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccchhHh
Confidence 5789999988876665422 44442 344432 33567788887776 8899997543 133 4444444
Q ss_pred HHHHHHHHHHHHHhCC---CcceEEEeccCccc
Q 015605 163 KDFTAYADVCFRQFGD---RVSYWTTVNEPNAF 192 (403)
Q Consensus 163 ~~f~~ya~~~~~~~~~---~v~~w~t~NEp~~~ 192 (403)
..+++|-...+..+++ .+..-.+=|||.-.
T Consensus 149 a~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 149 ADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 4444444444555554 35555688999854
No 214
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=20.88 E-value=1.8e+02 Score=31.77 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCc-----hhHHHHHHHHHHHHHHhCCCcceEEEeccCc
Q 015605 124 NLINELISYGIQPHVTLHHFDLPQALEDEYGGWINR-----TIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (403)
Q Consensus 124 ~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~-----~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 190 (403)
.++.+.++++=..-+....|..|.|+. +||..+ .++....++..-+.+.+|=.++|-=++||=.
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~---~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~ 184 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVG---NGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERG 184 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGG---TTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS-
T ss_pred hhHHHHHhhCCCCeEEEeccCCCcccc---CCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccC
Confidence 578888988877777777899999995 454332 2333445666667788888888888899965
No 215
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=20.86 E-value=2.5e+02 Score=33.56 Aligned_cols=69 Identities=16% Similarity=0.287 Sum_probs=48.2
Q ss_pred CcccCcHHHHHHHHHcCCCceeecccCcccccCCC-C---------CCCh------HhHHHHHHHHHHHHHc-CCcceEe
Q 015605 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-G---------PVNP------KGLQYYNNLINELISY-GIQPHVT 139 (403)
Q Consensus 77 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~-g---------~~n~------~~~~~y~~~i~~l~~~-gi~p~vt 139 (403)
..+..|++.++.++++|+|++-|. -|+|.|. | .+|+ .+.+-..++|+++.+. ||..|+.
T Consensus 129 G~~~~w~~~L~~ik~lGyN~Ihft----PI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilD 204 (1464)
T TIGR01531 129 GPLSEWEPRLRVAKEKGYNMIHFT----PLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITD 204 (1464)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC----CCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 346779999999999999998764 3444431 1 1232 2345578999999996 9999987
Q ss_pred --ecc--CCCcHHHH
Q 015605 140 --LHH--FDLPQALE 150 (403)
Q Consensus 140 --L~h--~~~P~~l~ 150 (403)
+.| +|.| |+.
T Consensus 205 vV~NHTa~ds~-Wl~ 218 (1464)
T TIGR01531 205 IVFNHTANNSP-WLL 218 (1464)
T ss_pred eeecccccCCH-HHH
Confidence 446 5554 665
No 216
>PRK01060 endonuclease IV; Provisional
Probab=20.81 E-value=4.6e+02 Score=24.67 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=36.7
Q ss_pred CcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcce
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH 137 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~ 137 (403)
-+++-++.++++|++++=+.+.-++.... +.++.+- .+++-+.+.++|++..
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~~~~~~~---~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKR--KPLEELN---IEAFKAACEKYGISPE 64 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcC--CCCCHHH---HHHHHHHHHHcCCCCC
Confidence 37888999999999999998766554322 2345443 4455566779999853
No 217
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.76 E-value=1.3e+02 Score=27.92 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=51.8
Q ss_pred cCcHHHHHHHHHcCCCceeecc-cCccc------ccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhh
Q 015605 80 HKYKEDVKLMADTGLDAYRFSI-SWSRL------IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDE 152 (403)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si-~W~ri------~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~ 152 (403)
+..++=+..+-+.|----+=+| +|||. .+++.|.+...+.....-+|+..+++|++=+||..--.++.-| +
T Consensus 77 ~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~~~meril--~ 154 (209)
T COG3916 77 YMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTDTGMERIL--R 154 (209)
T ss_pred chhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEchHHHHHH--H
Confidence 4455556666663333333354 88998 4555678888899999999999999999999999644344333 2
Q ss_pred hCCCC
Q 015605 153 YGGWI 157 (403)
Q Consensus 153 ~gg~~ 157 (403)
.-||.
T Consensus 155 r~Gw~ 159 (209)
T COG3916 155 RAGWP 159 (209)
T ss_pred HcCCC
Confidence 25664
No 218
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=20.61 E-value=6.6e+02 Score=24.08 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=55.0
Q ss_pred CcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCch
Q 015605 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRT 160 (403)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~ 160 (403)
+..+-++.+|+.|.. ++.+|..+--.|. .+..+ .+++.++++.+.+.|..- +.|. |- .|...|
T Consensus 115 ~~~~~v~~ak~~G~~-v~~~i~~~f~~~~-~~~~~---~~~~~~~~~~~~~~Ga~~-i~l~---------DT-~G~~~P- 177 (274)
T cd07938 115 RFEPVAELAKAAGLR-VRGYVSTAFGCPY-EGEVP---PERVAEVAERLLDLGCDE-ISLG---------DT-IGVATP- 177 (274)
T ss_pred HHHHHHHHHHHCCCe-EEEEEEeEecCCC-CCCCC---HHHHHHHHHHHHHcCCCE-EEEC---------CC-CCccCH-
Confidence 344557899999984 7777777655566 56776 678999999999999763 3442 33 565664
Q ss_pred hHHHHHHHHHHHHHHhCC
Q 015605 161 IVKDFTAYADVCFRQFGD 178 (403)
Q Consensus 161 ~~~~f~~ya~~~~~~~~~ 178 (403)
..+.++.+.+.+++++
T Consensus 178 --~~v~~lv~~l~~~~~~ 193 (274)
T cd07938 178 --AQVRRLLEAVLERFPD 193 (274)
T ss_pred --HHHHHHHHHHHHHCCC
Confidence 4566667777777754
No 219
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=20.48 E-value=6.1e+02 Score=24.58 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=56.4
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCcccccCCCCCCChHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCC
Q 015605 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (403)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~ 158 (403)
..+.++-++.+++.|+. ++.+|+=+---|. .|..+ .+++.++++.+.+.|.. .+.|. |- .|..+
T Consensus 119 l~~~~~~v~~ak~~g~~-v~~~i~~~~~~~~-~~~~~---~~~~~~~~~~~~~~G~d-~i~l~---------DT-~G~~~ 182 (287)
T PRK05692 119 LERFEPVAEAAKQAGVR-VRGYVSCVLGCPY-EGEVP---PEAVADVAERLFALGCY-EISLG---------DT-IGVGT 182 (287)
T ss_pred HHHHHHHHHHHHHcCCE-EEEEEEEEecCCC-CCCCC---HHHHHHHHHHHHHcCCc-EEEec---------cc-cCccC
Confidence 33456678888999974 6766665444466 56777 67899999999999987 34552 33 56666
Q ss_pred chhHHHHHHHHHHHHHHhCC
Q 015605 159 RTIVKDFTAYADVCFRQFGD 178 (403)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~~ 178 (403)
|. ...+.++.+.+++++
T Consensus 183 P~---~v~~lv~~l~~~~~~ 199 (287)
T PRK05692 183 PG---QVRAVLEAVLAEFPA 199 (287)
T ss_pred HH---HHHHHHHHHHHhCCC
Confidence 54 566677777777764
No 220
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=20.43 E-value=4.1e+02 Score=23.75 Aligned_cols=19 Identities=16% Similarity=0.443 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhCCCc
Q 015605 162 VKDFTAYADVCFRQFGDRV 180 (403)
Q Consensus 162 ~~~f~~ya~~~~~~~~~~v 180 (403)
.+....|++++-++.|.++
T Consensus 109 ~~~~~~f~~~v~~~~G~~~ 127 (191)
T cd06413 109 LAELQVFLDALEAHYGKRP 127 (191)
T ss_pred HHHHHHHHHHHHHHHCCCe
Confidence 4445556666655555443
No 221
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.36 E-value=1.2e+02 Score=28.74 Aligned_cols=59 Identities=8% Similarity=0.154 Sum_probs=37.0
Q ss_pred cCcHHHHHHHHHcCCCceeecccCccc-ccCCCCCCChHhHHHHHHHHHHHHHcCCcceEee
Q 015605 80 HKYKEDVKLMADTGLDAYRFSISWSRL-IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (403)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri-~P~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (403)
...++=|+.+++||++.+|+. ..... .|. ....-...++..+++.+.+.++||+..+=-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLA-GYDVYYEEK-SEETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEC-Ccccccccc-cHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 335566788999999999974 11111 111 111113345677888888999999776544
No 222
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=20.22 E-value=1.3e+02 Score=21.50 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhccccccc---CCCCCC-Ceeeeecchhhcc
Q 015605 8 LLMYLLNLATSALTAVEYSK---NDFPPG-FLFGASTSAYQVE 46 (403)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~---~~fp~~-FlwG~Atsa~QvE 46 (403)
+|+..|+|+. |.++..+.. ..||-+ =.|--+-|--|+|
T Consensus 5 lL~l~l~La~-CqT~D~lAtckGpiFpLNVgrWqptpsDLq~~ 46 (55)
T PRK13859 5 LLCLALALAG-CQTNDTLASCKGPIFPLNVGRWQPTPSDLQLT 46 (55)
T ss_pred HHHHHHHHHh-ccccCccccccCCccccccccccCChhhcccc
Confidence 4455555554 666644433 237744 4677777778887
No 223
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=20.12 E-value=3.8e+02 Score=25.11 Aligned_cols=53 Identities=23% Similarity=0.506 Sum_probs=39.2
Q ss_pred hHhHHHHHHHHHHHHHcCCcceEeeccCCCcHHHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCcceEEE
Q 015605 116 PKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTT 185 (403)
Q Consensus 116 ~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t 185 (403)
..+..+.+++++.|. .|..+=+.-.||= ..+ ++.|.++.+.+.++|| .+.|+|
T Consensus 119 ~~g~~Wl~~F~~~~~-~~~~~D~iavH~Y-------------~~~-~~~~~~~i~~~~~~~~--kPIWIT 171 (239)
T PF11790_consen 119 PGGLDWLSQFLSACA-RGCRVDFIAVHWY-------------GGD-ADDFKDYIDDLHNRYG--KPIWIT 171 (239)
T ss_pred CCccHHHHHHHHhcc-cCCCccEEEEecC-------------CcC-HHHHHHHHHHHHHHhC--CCEEEE
Confidence 345779999999988 6666544444542 112 7789999999999998 788887
Done!