Query 015607
Match_columns 403
No_of_seqs 415 out of 1471
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:33:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4u_A Zinc finger, FYVE domai 99.8 1.1E-20 3.9E-25 153.0 6.1 69 210-280 4-78 (84)
2 1z2q_A LM5-1; membrane protein 99.8 5.2E-21 1.8E-25 155.1 4.1 69 210-280 11-79 (84)
3 2yw8_A RUN and FYVE domain-con 99.8 2.6E-20 8.9E-25 150.3 4.2 67 210-280 9-75 (82)
4 3t7l_A Zinc finger FYVE domain 99.8 1.8E-20 6E-25 153.9 3.3 75 206-284 6-80 (90)
5 1vfy_A Phosphatidylinositol-3- 99.8 1.4E-20 4.7E-25 148.8 1.9 67 210-281 4-70 (73)
6 1joc_A EEA1, early endosomal a 99.8 1.2E-19 4.1E-24 157.4 3.9 66 210-279 59-124 (125)
7 1dvp_A HRS, hepatocyte growth 99.7 4.5E-18 1.5E-22 159.7 3.6 67 208-279 152-218 (220)
8 3zyq_A Hepatocyte growth facto 99.7 5.3E-18 1.8E-22 160.3 3.8 69 207-280 154-222 (226)
9 1wfk_A Zinc finger, FYVE domai 99.7 2.3E-17 7.8E-22 135.0 3.8 61 217-280 6-66 (88)
10 1y02_A CARP2, FYVE-ring finger 99.6 1.1E-16 3.8E-21 138.0 1.8 60 211-280 10-69 (120)
11 3mpx_A FYVE, rhogef and PH dom 99.6 1.3E-16 4.3E-21 161.6 0.0 69 208-279 363-431 (434)
12 2vrw_B P95VAV, VAV1, proto-onc 97.8 6.7E-06 2.3E-10 82.5 2.2 47 208-254 345-391 (406)
13 1zbd_B Rabphilin-3A; G protein 96.3 0.0021 7.1E-08 56.0 3.4 55 219-278 54-108 (134)
14 2zet_C Melanophilin; complex, 96.2 0.0021 7.1E-08 57.2 2.6 51 220-278 68-118 (153)
15 3ky9_A Proto-oncogene VAV; cal 94.9 0.01 3.5E-07 62.5 2.7 46 209-254 518-563 (587)
16 2csz_A Synaptotagmin-like prot 92.4 0.042 1.4E-06 43.4 1.5 51 219-278 24-74 (76)
17 1wff_A Riken cDNA 2810002D23 p 90.9 0.27 9.1E-06 39.6 4.6 31 218-251 23-53 (85)
18 1wfh_A Zinc finger (AN1-like) 90.0 0.24 8.1E-06 37.9 3.4 29 219-251 14-42 (64)
19 1wfp_A Zinc finger (AN1-like) 89.2 0.46 1.6E-05 37.3 4.5 30 218-251 23-52 (74)
20 1wfl_A Zinc finger protein 216 89.1 0.38 1.3E-05 37.7 4.1 29 219-251 24-52 (74)
21 1wg2_A Zinc finger (AN1-like) 85.1 0.66 2.3E-05 35.4 3.3 29 219-251 14-42 (64)
22 1z60_A TFIIH basal transcripti 84.6 0.096 3.3E-06 39.4 -1.6 30 221-252 16-45 (59)
23 2e72_A POGO transposable eleme 76.0 0.49 1.7E-05 34.1 -0.2 35 212-247 5-40 (49)
24 1x4w_A Hypothetical protein FL 74.0 1.4 4.8E-05 33.9 1.9 33 217-251 12-45 (67)
25 1twf_L ABC10-alpha, DNA-direct 73.2 1.5 5.1E-05 33.9 1.8 27 221-247 29-56 (70)
26 2ecm_A Ring finger and CHY zin 71.2 2.6 9E-05 29.2 2.7 36 219-255 4-39 (55)
27 2a20_A Regulating synaptic mem 70.9 3 0.0001 31.4 2.9 53 218-277 7-60 (62)
28 4gzn_C ZFP-57, zinc finger pro 67.9 2.1 7.3E-05 31.2 1.6 28 221-248 5-43 (60)
29 1iym_A EL5; ring-H2 finger, ub 67.4 3.7 0.00013 28.5 2.8 47 220-276 5-51 (55)
30 2lv2_A Insulinoma-associated p 63.6 5.1 0.00017 31.3 3.2 29 219-247 27-66 (85)
31 3lrq_A E3 ubiquitin-protein li 63.1 1.8 6.3E-05 34.5 0.5 46 221-278 23-68 (100)
32 1bor_A Transcription factor PM 59.0 9.2 0.00032 27.1 3.6 31 219-254 5-35 (56)
33 2lce_A B-cell lymphoma 6 prote 58.9 6.9 0.00024 28.2 3.0 13 219-231 16-28 (74)
34 1jm7_B BARD1, BRCA1-associated 58.5 5.6 0.00019 32.5 2.7 43 221-278 23-65 (117)
35 1bbo_A Human enhancer-binding 58.1 6.4 0.00022 26.6 2.6 10 222-231 3-12 (57)
36 2ect_A Ring finger protein 126 58.0 7.5 0.00026 29.0 3.2 50 219-279 14-63 (78)
37 1x4j_A Ring finger protein 38; 57.6 3.5 0.00012 30.7 1.2 49 219-278 22-70 (75)
38 2adr_A ADR1; transcription reg 56.8 6.7 0.00023 26.9 2.6 10 222-231 4-13 (60)
39 2jrp_A Putative cytoplasmic pr 56.8 5 0.00017 31.9 2.0 56 221-280 3-63 (81)
40 2kiz_A E3 ubiquitin-protein li 56.1 4 0.00014 29.8 1.3 50 219-279 13-62 (69)
41 1x4v_A Hypothetical protein LO 55.8 7.9 0.00027 29.2 2.9 27 220-250 12-40 (63)
42 3uk3_C Zinc finger protein 217 55.2 5.5 0.00019 27.0 1.8 11 221-231 5-15 (57)
43 2yur_A Retinoblastoma-binding 54.6 6.2 0.00021 29.4 2.2 46 221-277 16-61 (74)
44 1e4u_A Transcriptional repress 54.2 4.6 0.00016 31.2 1.4 52 219-279 10-61 (78)
45 2eps_A POZ-, at HOOK-, and zin 52.0 7.1 0.00024 26.6 2.0 11 221-231 13-23 (54)
46 2ct2_A Tripartite motif protei 51.9 5 0.00017 30.5 1.2 53 220-279 15-67 (88)
47 2egp_A Tripartite motif-contai 51.9 4.5 0.00015 30.1 1.0 53 220-279 12-64 (79)
48 1chc_A Equine herpes virus-1 r 51.4 8.3 0.00028 27.8 2.4 48 220-280 5-52 (68)
49 1x6e_A Zinc finger protein 24; 50.9 7.7 0.00026 27.9 2.1 11 221-231 15-25 (72)
50 1x5w_A Zinc finger protein 64, 50.3 8.2 0.00028 27.5 2.2 11 221-231 10-20 (70)
51 2ecv_A Tripartite motif-contai 49.9 8.6 0.00029 28.7 2.3 52 220-279 19-70 (85)
52 1wys_A Riken cDNA 2310008M20 p 49.3 11 0.00037 29.5 2.8 28 220-251 14-43 (75)
53 3cc2_Z 50S ribosomal protein L 48.7 5.2 0.00018 33.9 0.9 31 221-251 61-92 (116)
54 2cot_A Zinc finger protein 435 48.5 22 0.00074 25.6 4.4 13 219-231 17-29 (77)
55 2ysj_A Tripartite motif-contai 48.3 5.8 0.0002 28.4 1.0 32 220-256 20-51 (63)
56 2ctd_A Zinc finger protein 512 48.1 6.7 0.00023 30.8 1.5 11 221-231 35-46 (96)
57 1vd4_A Transcription initiatio 48.1 6.1 0.00021 28.0 1.1 28 221-248 15-50 (62)
58 2ecl_A Ring-box protein 2; RNF 47.5 8.6 0.00029 29.4 2.0 59 211-278 6-74 (81)
59 2ecn_A Ring finger protein 141 47.4 3.7 0.00013 30.0 -0.1 46 220-280 15-60 (70)
60 2djb_A Polycomb group ring fin 45.5 6.3 0.00021 29.1 0.9 48 220-280 15-62 (72)
61 3l11_A E3 ubiquitin-protein li 45.5 6.8 0.00023 31.6 1.2 47 221-280 16-62 (115)
62 2ckl_B Ubiquitin ligase protei 45.5 5 0.00017 34.7 0.4 47 221-279 55-101 (165)
63 2ayj_A 50S ribosomal protein L 44.6 7.6 0.00026 28.8 1.2 22 220-244 19-40 (56)
64 2ysl_A Tripartite motif-contai 44.2 7.6 0.00026 28.4 1.2 49 220-279 20-68 (73)
65 2drp_A Protein (tramtrack DNA- 44.1 12 0.0004 26.1 2.1 11 221-231 11-21 (66)
66 2epr_A POZ-, at HOOK-, and zin 41.7 10 0.00035 25.0 1.4 11 221-231 13-23 (48)
67 2y43_A E3 ubiquitin-protein li 41.7 6.7 0.00023 30.8 0.5 46 221-279 23-68 (99)
68 2d8t_A Dactylidin, ring finger 41.7 7.4 0.00025 28.6 0.7 47 219-279 14-60 (71)
69 2ckl_A Polycomb group ring fin 41.7 6.3 0.00022 31.5 0.4 47 221-280 16-62 (108)
70 3h0g_L DNA-directed RNA polyme 41.0 16 0.00054 27.6 2.5 25 221-245 22-46 (63)
71 2gqj_A Zinc finger protein KIA 40.7 6.2 0.00021 30.5 0.2 11 221-231 25-35 (98)
72 2ct1_A Transcriptional repress 40.6 14 0.00048 26.7 2.1 11 221-231 16-26 (77)
73 1wfe_A Riken cDNA 2310008M20 p 40.4 11 0.00036 30.2 1.5 28 220-251 25-54 (86)
74 3ng2_A RNF4, snurf, ring finge 39.7 5.9 0.0002 28.8 -0.1 52 219-279 9-62 (71)
75 2ep4_A Ring finger protein 24; 39.7 9.9 0.00034 28.0 1.2 49 220-279 15-63 (74)
76 2d9h_A Zinc finger protein 692 39.5 13 0.00044 27.0 1.8 11 221-231 8-18 (78)
77 3j20_Y 30S ribosomal protein S 38.7 12 0.00043 26.7 1.5 27 221-247 20-47 (50)
78 2ea6_A Ring finger protein 4; 37.9 6.7 0.00023 28.2 -0.0 51 219-278 14-66 (69)
79 1wim_A KIAA0161 protein; ring 37.5 8.9 0.0003 30.0 0.6 55 220-277 5-61 (94)
80 2csy_A Zinc finger protein 183 37.1 11 0.00038 28.3 1.1 45 220-278 15-59 (81)
81 2xeu_A Ring finger protein 4; 36.9 5.9 0.0002 28.0 -0.5 51 220-279 3-55 (64)
82 3fl2_A E3 ubiquitin-protein li 36.8 8.1 0.00028 31.7 0.3 46 221-279 53-98 (124)
83 1v87_A Deltex protein 2; ring- 35.9 6.3 0.00021 31.7 -0.5 55 221-279 26-93 (114)
84 3ztg_A E3 ubiquitin-protein li 35.3 8.6 0.0003 29.6 0.2 48 220-278 13-60 (92)
85 2ecy_A TNF receptor-associated 34.9 3.2 0.00011 30.1 -2.2 47 220-279 15-61 (66)
86 3v2d_5 50S ribosomal protein L 34.9 14 0.00048 27.5 1.3 20 220-244 30-50 (60)
87 1vq8_Z 50S ribosomal protein L 34.6 12 0.00042 29.6 1.0 30 221-251 28-59 (83)
88 1wd2_A Ariadne-1 protein homol 34.4 31 0.0011 25.4 3.1 36 220-255 6-44 (60)
89 1jm7_A BRCA1, breast cancer ty 34.0 13 0.00043 29.5 1.0 47 221-278 22-68 (112)
90 2dmd_A Zinc finger protein 64, 33.9 30 0.001 25.7 3.2 28 221-248 9-47 (96)
91 2ecj_A Tripartite motif-contai 33.6 13 0.00045 25.7 1.0 31 220-255 15-45 (58)
92 3j21_g 50S ribosomal protein L 32.7 19 0.00063 26.1 1.6 23 221-246 15-37 (51)
93 2gmg_A Hypothetical protein PF 32.5 18 0.00063 30.0 1.8 10 221-230 68-77 (105)
94 2ee8_A Protein ODD-skipped-rel 32.3 23 0.0008 26.9 2.3 28 220-247 17-55 (106)
95 2ecw_A Tripartite motif-contai 32.1 12 0.00042 27.8 0.6 52 220-279 19-70 (85)
96 2ct7_A Ring finger protein 31; 32.0 18 0.00061 28.3 1.6 33 221-253 26-59 (86)
97 1llm_C Chimera of ZIF23-GCN4; 31.5 17 0.00059 27.0 1.4 27 221-247 4-41 (88)
98 2l0b_A E3 ubiquitin-protein li 31.1 9.9 0.00034 29.6 -0.1 49 219-278 39-87 (91)
99 4ayb_P DNA-directed RNA polyme 31.0 29 0.00098 24.9 2.3 25 221-245 4-31 (48)
100 1wil_A KIAA1045 protein; ring 30.9 24 0.0008 28.4 2.1 31 221-254 16-46 (89)
101 2ctu_A Zinc finger protein 483 30.7 17 0.00058 25.4 1.2 29 221-249 19-51 (73)
102 2kvh_A Zinc finger and BTB dom 30.5 19 0.00066 20.1 1.2 12 236-247 2-13 (27)
103 1x6h_A Transcriptional repress 30.4 26 0.00091 25.3 2.3 11 221-231 16-26 (86)
104 2yt9_A Zinc finger-containing 29.6 27 0.00094 25.8 2.3 29 220-248 7-46 (95)
105 2jmo_A Parkin; IBR, E3 ligase, 29.4 52 0.0018 25.3 3.9 39 216-254 21-67 (80)
106 2m0e_A Zinc finger and BTB dom 29.0 20 0.00068 19.9 1.1 10 238-247 3-12 (29)
107 1t1h_A Gspef-atpub14, armadill 29.0 16 0.00055 27.1 0.8 46 220-278 8-53 (78)
108 2jne_A Hypothetical protein YF 28.9 22 0.00076 29.2 1.6 33 221-254 33-70 (101)
109 2lcq_A Putative toxin VAPC6; P 28.8 20 0.00069 31.0 1.5 24 221-245 133-156 (165)
110 2wbt_A B-129; zinc finger; 2.7 28.6 19 0.00063 28.7 1.2 11 221-231 75-85 (129)
111 1dx8_A Rubredoxin; electron tr 28.5 39 0.0013 25.8 2.9 42 235-276 5-48 (70)
112 2kmk_A Zinc finger protein GFI 28.4 21 0.00073 25.5 1.4 10 222-231 31-40 (82)
113 2epq_A POZ-, at HOOK-, and zin 28.4 20 0.0007 22.9 1.2 11 221-231 11-21 (45)
114 2kvf_A Zinc finger and BTB dom 28.3 23 0.00077 19.8 1.2 13 236-248 2-14 (28)
115 1ard_A Yeast transcription fac 28.3 19 0.00063 20.2 0.8 11 237-247 2-12 (29)
116 1e8j_A Rubredoxin; iron-sulfur 28.0 44 0.0015 24.0 2.9 13 236-248 2-14 (52)
117 2m0d_A Zinc finger and BTB dom 27.8 23 0.00077 19.8 1.2 14 236-249 2-15 (30)
118 2zjr_Z 50S ribosomal protein L 27.5 23 0.00077 26.4 1.3 21 219-244 29-50 (60)
119 2lt7_A Transcriptional regulat 27.5 21 0.0007 29.7 1.3 27 222-248 24-61 (133)
120 1yk4_A Rubredoxin, RD; electro 27.4 34 0.0012 24.6 2.3 14 236-249 1-14 (52)
121 2v3b_B Rubredoxin 2, rubredoxi 27.4 35 0.0012 24.9 2.3 15 236-250 2-16 (55)
122 1a1h_A QGSR zinc finger peptid 27.3 22 0.00077 26.0 1.4 10 222-231 36-45 (90)
123 2d8v_A Zinc finger FYVE domain 27.2 33 0.0011 26.2 2.2 29 218-252 6-35 (67)
124 1f2i_G Fusion of N-terminal 17 26.8 23 0.0008 25.0 1.3 28 220-247 19-59 (73)
125 3j21_i 50S ribosomal protein L 26.8 23 0.0008 28.1 1.4 27 221-250 36-66 (83)
126 4a0k_B E3 ubiquitin-protein li 26.8 15 0.00052 30.7 0.3 57 212-277 40-109 (117)
127 2csh_A Zinc finger protein 297 26.6 32 0.0011 26.4 2.2 10 221-231 11-20 (110)
128 2dmi_A Teashirt homolog 3; zin 26.4 33 0.0011 26.5 2.3 8 223-230 53-60 (115)
129 1g25_A CDK-activating kinase a 26.1 13 0.00043 26.8 -0.3 50 221-279 4-54 (65)
130 1ffk_W Ribosomal protein L37AE 26.0 23 0.0008 27.5 1.2 28 220-250 27-58 (73)
131 3iz5_m 60S ribosomal protein L 25.9 28 0.00097 28.2 1.8 28 221-251 37-68 (92)
132 1rik_A E6APC1 peptide; E6-bind 25.9 25 0.00084 19.7 1.1 12 237-248 2-13 (29)
133 2kvg_A Zinc finger and BTB dom 25.3 22 0.00076 20.0 0.8 12 236-247 2-13 (27)
134 2dlq_A GLI-kruppel family memb 25.1 42 0.0014 25.9 2.7 11 221-231 8-18 (124)
135 2elu_A Zinc finger protein 406 24.8 18 0.00062 24.0 0.3 11 236-246 8-18 (37)
136 2m0f_A Zinc finger and BTB dom 24.7 26 0.00089 19.4 1.0 12 237-248 2-13 (29)
137 2fc7_A ZZZ3 protein; structure 24.6 28 0.00096 27.3 1.5 31 221-253 22-56 (82)
138 1pft_A TFIIB, PFTFIIBN; N-term 24.5 35 0.0012 23.7 1.9 27 221-247 6-34 (50)
139 2ghf_A ZHX1, zinc fingers and 24.3 32 0.0011 27.5 1.8 11 221-231 19-29 (102)
140 1z6u_A NP95-like ring finger p 24.3 18 0.0006 31.1 0.3 46 221-279 79-124 (150)
141 2els_A Zinc finger protein 406 24.0 29 0.00098 20.8 1.2 15 235-249 7-21 (36)
142 3izc_m 60S ribosomal protein R 23.9 33 0.0011 27.8 1.8 28 221-251 37-68 (92)
143 2lvu_A Zinc finger and BTB dom 29.5 17 0.00057 20.1 0.0 13 237-249 2-14 (26)
144 2dlk_A Novel protein; ZF-C2H2 23.7 28 0.00096 24.9 1.3 27 221-247 39-78 (79)
145 2kn9_A Rubredoxin; metalloprot 23.6 52 0.0018 25.9 2.9 41 236-276 26-68 (81)
146 4ayc_A E3 ubiquitin-protein li 23.6 18 0.00061 30.3 0.2 45 221-279 54-98 (138)
147 1wjp_A Zinc finger protein 295 23.4 34 0.0012 26.2 1.8 29 220-248 16-53 (107)
148 3jyw_9 60S ribosomal protein L 22.3 48 0.0016 25.6 2.3 26 221-249 27-56 (72)
149 1klr_A Zinc finger Y-chromosom 22.3 27 0.00091 19.5 0.7 10 238-247 3-12 (30)
150 3knv_A TNF receptor-associated 22.2 22 0.00074 30.3 0.4 45 221-278 32-76 (141)
151 2elx_A Zinc finger protein 406 21.6 35 0.0012 20.0 1.2 14 235-248 5-18 (35)
152 2elr_A Zinc finger protein 406 21.5 31 0.001 20.5 0.9 14 235-248 7-20 (36)
153 3mwm_A ZUR, putative metal upt 21.1 26 0.0009 29.5 0.7 13 240-252 90-102 (139)
154 2eod_A TNF receptor-associated 21.0 33 0.0011 24.0 1.2 10 222-231 12-21 (66)
155 1s24_A Rubredoxin 2; electron 20.8 52 0.0018 26.3 2.4 16 235-250 33-48 (87)
156 1paa_A Yeast transcription fac 20.7 32 0.0011 19.3 0.8 10 238-247 3-12 (30)
No 1
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-20 Score=153.03 Aligned_cols=69 Identities=20% Similarity=0.458 Sum_probs=61.1
Q ss_pred CCCCcccCCCCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCC------CCccccCcchHhHhcc
Q 015607 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRV------SDPQRVCDVCCVRLQS 280 (403)
Q Consensus 210 ~~p~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~------~~pvRVC~~C~~~L~~ 280 (403)
..+.|+||+++..|+.|+++|+++ +||||||+||+|||++||+++++||.. +. .+++|||+.||..|..
T Consensus 4 ~~~~W~pd~~~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~~~~~l~~~-g~~~p~~~~~~~RVC~~C~~~l~~ 78 (84)
T 1x4u_A 4 GSSGRYPTNNFGNCTGCSATFSVL-KKRRSCSNCGNSFCSRCCSFKVPKSSM-GATAPEAQRETVFVCASCNQTLSK 78 (84)
T ss_dssp CCCCSCSCCCCSSCSSSCCCCCSS-SCCEECSSSCCEECTTTSCEEECSTTT-SCCCSSCSSCCEEECHHHHHHHHS
T ss_pred CCCccccCCCCCcCcCcCCccccc-hhhhhhcCCCcEEChhhcCCceecccc-cccCccccCCccEECHHHHHHHhc
Confidence 468999999999999999999975 899999999999999999999999842 32 3689999999998865
No 2
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.81 E-value=5.2e-21 Score=155.06 Aligned_cols=69 Identities=42% Similarity=0.987 Sum_probs=62.7
Q ss_pred CCCCcccCCCCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhcc
Q 015607 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (403)
Q Consensus 210 ~~p~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (403)
.++.|+||+++..|+.|+++|+++ +||||||+||+|||++||+++..||. .+..+++|||+.||..|+.
T Consensus 11 ~~~~W~pd~~~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 11 SKGYWQEDEDAPACNGCGCVFTTT-VRRHHCRNCGYVLCGDCSRHRAAIPM-RGITEPERVCDACYLALRS 79 (84)
T ss_dssp CCSCCCCTTTCCBCTTTCCBCCTT-SCCEECTTTCCEECTGGGCCEEEETT-TTEEEEEECCHHHHHHHHT
T ss_pred CCCccccCCCCCCCcCcCCccccc-hhcccccCCCcEEChHHhCCeEeccC-CCCCCCCEECHHHHHHHhh
Confidence 578999999999999999999975 89999999999999999999999985 3447899999999998865
No 3
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.79 E-value=2.6e-20 Score=150.32 Aligned_cols=67 Identities=40% Similarity=0.849 Sum_probs=56.3
Q ss_pred CCCCcccCCCCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhcc
Q 015607 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (403)
Q Consensus 210 ~~p~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (403)
..+.|++|+++..|+.|+++|+++ +||||||+||+|||++||.++++||. ..+|+|||+.||..|..
T Consensus 9 ~~~~W~~d~~~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 9 KGHAWLKDDEATHCRQCEKEFSIS-RRKHHCRNCGHIFCNTCSSNELALPS---YPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp ------CCCCCCBCTTTCCBCBTT-BCCEECTTTCCEECSGGGCEEECCTT---CSSCEEECHHHHHHTTC
T ss_pred CCCccccCccCCcccCcCCcccCc-cccccCCCCCCEEChHHhCCeeecCC---CCCcCEECHHHHHHHHH
Confidence 458999999999999999999975 89999999999999999999999984 37899999999998754
No 4
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.79 E-value=1.8e-20 Score=153.95 Aligned_cols=75 Identities=39% Similarity=0.886 Sum_probs=65.5
Q ss_pred cccCCCCCcccCCCCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhcccchh
Q 015607 206 LLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPY 284 (403)
Q Consensus 206 ~~~~~~p~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~~~~ 284 (403)
++...+|.|++|+++..|+.|+++|+++ +||||||+||+|||..||.++..+|. ..+++|||+.||..|+..+.+
T Consensus 6 ~l~~~~p~W~~d~~~~~C~~C~~~F~~~-~RrhhCr~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l~~~~~~ 80 (90)
T 3t7l_A 6 VLGQKQPTWVPDSEAPNCMNCQVKFTFT-KRRHHCRACGKVFCGVCCNRKCKLQY---LEKEARVCVVCYETISKAQAF 80 (90)
T ss_dssp CTTTSCCCCCCGGGCCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEEEEETT---TTEEEEECHHHHHHHHHHC--
T ss_pred ccCCCCCcCcccccCCcCcCCCCcccch-hhCccccCCCCEECCcccCCeeecCC---CCCCCeECHHHHHHHHHHhhh
Confidence 4556789999999999999999999975 89999999999999999999999874 358999999999999876543
No 5
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.79 E-value=1.4e-20 Score=148.80 Aligned_cols=67 Identities=39% Similarity=0.954 Sum_probs=57.5
Q ss_pred CCCCcccCCCCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhccc
Q 015607 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSV 281 (403)
Q Consensus 210 ~~p~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~ 281 (403)
.+|.|+++ ..|+.|+++|+++ +||||||+||+|||++||+++++||. ++..+|+|||+.||..|+.+
T Consensus 4 ~~p~W~~~---~~C~~C~~~F~~~-~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~i 70 (73)
T 1vfy_A 4 TPADWIDS---DACMICSKKFSLL-NRKHHCRSCGGVFCQEHSSNSIPLPD-LGIYEPVRVCDSCFEDYEFI 70 (73)
T ss_dssp ---CCCCC---SBCTTTCCBCBTT-BCCEECTTTCCEECGGGSCEEEEEGG-GTEEEEEEECHHHHHHHHHH
T ss_pred CCCcCccC---CcccCCCCccCCc-cccccCCCCCEEEcccccCCeEEccc-CCCCCCCEECHHHHHHHHHH
Confidence 47999998 5899999999975 89999999999999999999999984 45568999999999988754
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.77 E-value=1.2e-19 Score=157.41 Aligned_cols=66 Identities=45% Similarity=0.981 Sum_probs=60.5
Q ss_pred CCCCcccCCCCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 210 ~~p~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
.+|.|+||+++..|+.|+++|+++ +||||||+||+|||+.||.++.++|. ..+|+|||+.||..|+
T Consensus 59 ~~~~W~~d~~~~~C~~C~~~Fs~~-~RrHHCR~CG~vfC~~Cs~~~~~~p~---~~~p~RVC~~C~~~l~ 124 (125)
T 1joc_A 59 LNRKWAEDNEVQNCMACGKGFSVT-VRRHHCRQCGNIFCAECSAKNALTPS---SKKPVRVCDACFNDLQ 124 (125)
T ss_dssp HHCCCCCGGGCCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEEECCTT---CSSCEEECHHHHHHTT
T ss_pred CCCccccCCCCCCCcCcCCccccc-cccccCCCCCeEEChHHhCCccccCC---CCCCCEeCHHHHHHhc
Confidence 358999999999999999999975 89999999999999999999999884 4789999999999875
No 7
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.69 E-value=4.5e-18 Score=159.71 Aligned_cols=67 Identities=37% Similarity=0.905 Sum_probs=59.6
Q ss_pred cCCCCCcccCCCCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 208 DAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 208 ~~~~p~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
...+|.|+++ ..|+.|+++|+++ +||||||+||+|||++||+++.++|. ++..+|+|||+.||..|+
T Consensus 152 ~~~~~~W~~~---~~C~~C~~~F~~~-~rrhhCr~CG~v~C~~Cs~~~~~~~~-~~~~~~~RvC~~C~~~l~ 218 (220)
T 1dvp_A 152 ADTAPNWADG---RVCHRCRVEFTFT-NRKHHCRNCGQVFCGQCTAKQCPLPK-YGIEKEVRVCDGCFAALQ 218 (220)
T ss_dssp CSCCCCCCCC---SBCTTTCCBCCSS-SCCEECTTTCCEECSTTSCEEEEEGG-GTEEEEEEECHHHHHHHH
T ss_pred ccccccCCCC---CccCCCCCccCCc-ccccccCCcCCEEChHHhCCeeecCc-CCCCCCCEeCHHHHHHHh
Confidence 3458899987 6999999999975 89999999999999999999999984 466789999999999875
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.69 E-value=5.3e-18 Score=160.29 Aligned_cols=69 Identities=38% Similarity=0.922 Sum_probs=60.8
Q ss_pred ccCCCCCcccCCCCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhcc
Q 015607 207 LDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (403)
Q Consensus 207 ~~~~~p~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (403)
....+|.|+++ ..|+.|+++|+++ +||||||+||++||++||+++..+|. ++..+|+|||+.||..|..
T Consensus 154 ~~~~~p~W~~~---~~C~~C~~~F~~~-~RrhHCR~CG~v~C~~Cs~~~~~~p~-~~~~~~~RVC~~C~~~l~~ 222 (226)
T 3zyq_A 154 AAERAPDWVDA---EECHRCRVQFGVM-TRKHHCRACGQIFCGKCSSKYSTIPK-FGIEKEVRVCEPCYEQLNR 222 (226)
T ss_dssp CCCCCCCCCCC---SBCTTTCCBCBTT-BCCEECTTTCCEECTTTCCEEEEEGG-GTEEEEEEECHHHHHHHCC
T ss_pred hcccccccccC---CCCcCcCCCCCcc-ccccccCCCcCEeChhhcCCcccCCC-CCCCCCCEeCHHHHHHhhh
Confidence 34568999987 6899999999975 89999999999999999999999984 4567899999999998865
No 9
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.66 E-value=2.3e-17 Score=134.96 Aligned_cols=61 Identities=30% Similarity=0.645 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhcc
Q 015607 217 DSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (403)
Q Consensus 217 d~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (403)
+.++..|+.|+++|+++ +||||||+||+|||++||.++++||.. + .+++|||+.||..|..
T Consensus 6 ~~~~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~~~~~lp~~-g-~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLF-KKEYGCKNCGRAFCNGCLSFSALVPRA-G-NTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCCCSBCTTTCCBCCSS-SCEEECSSSCCEEETTTSCEEEEETTT-T-SEEEEECHHHHHHHHH
T ss_pred CCcCCCCcCcCCcccCc-cccccCCCCCCEEChhHcCCceecccc-C-CCcCEECHHHHHHHHh
Confidence 35678999999999975 899999999999999999999999853 3 5799999999998865
No 10
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.60 E-value=1.1e-16 Score=137.96 Aligned_cols=60 Identities=22% Similarity=0.431 Sum_probs=42.9
Q ss_pred CCCcccCCCCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhcc
Q 015607 211 PPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (403)
Q Consensus 211 ~p~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (403)
.+.|.||.++..|+.|+.+|+++ +||||||+||+|||++||+++.+ ++|||+.||..+..
T Consensus 10 ~~~~~Pd~~~~~C~~C~~~Fs~~-~RkHHCR~CG~ifC~~Cs~~~~~---------~vRVC~~C~~~~~~ 69 (120)
T 1y02_A 10 SSFPSPTGLEPSCKSCGAHFANT-ARKQTCLDCKKNFCMTCSSQVGN---------GPRLCLLCQRFRAT 69 (120)
T ss_dssp ----------CCCTTTCCCCSSG-GGCEECTTTCCEECGGGEEC-------------CCEEHHHHHHHHT
T ss_pred ccCCcCccccCcccCcCCccccc-cccccCCCCCCeeCHHHhCCCCC---------CceECHHHHHHHhc
Confidence 45789999999999999999974 89999999999999999998753 49999999998653
No 11
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=1.3e-16 Score=161.56 Aligned_cols=69 Identities=33% Similarity=0.718 Sum_probs=0.0
Q ss_pred cCCCCCcccCCCCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 208 DAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 208 ~~~~p~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
...+|.|++|.++..|+.|+.+|++ +.||||||.||++||..||.++.++|. ...+++|||+.||..|.
T Consensus 363 ~~~~p~w~~~~~~~~c~~c~~~f~~-~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~--~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 363 GERPPTLVPVTHVMMCMNCGCDFSL-TLRRHHCHACGKIVCRNCSRNKYPLKY--LKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccCCCcCCCcccCCcCCCcCCCCCC-cchhhhcccCcCEeehhhCCCeeeCCC--CCCCcCEecHHHHHHHH
Confidence 3468999999999999999999996 589999999999999999999988873 45689999999999875
No 12
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=97.77 E-value=6.7e-06 Score=82.49 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=41.5
Q ss_pred cCCCCCcccCCCCCCCCCCCcccCcccccccccccCCceEcCCCCCC
Q 015607 208 DAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKG 254 (403)
Q Consensus 208 ~~~~p~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~ 254 (403)
....+.|.++..++.|+.|+..|.-+++|+||||.||.++|..|+..
T Consensus 345 ~~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 345 NGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp GGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 34678899999999999999999645689999999999999999864
No 13
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=96.32 E-value=0.0021 Score=56.02 Aligned_cols=55 Identities=22% Similarity=0.563 Sum_probs=44.9
Q ss_pred CCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHh
Q 015607 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (403)
....|..|.++|+++..+.|-|..|..-||.+|..... .......-+|..|+..-
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~-----~~~~~~~W~C~vC~k~r 108 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS-----NNRPHPVWLCKICLEQR 108 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC-----CSSSSCCEEEHHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccC-----CCCCccceechhhHHHH
Confidence 45789999999987778999999999999999986531 12356789999999863
No 14
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=96.17 E-value=0.0021 Score=57.24 Aligned_cols=51 Identities=25% Similarity=0.657 Sum_probs=43.8
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHh
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (403)
...|..|.++|.++..+.+-|..|..-||.+|+.+ ++ ....-+|..|+..-
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---~~-----~~~~W~C~vC~k~r 118 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---HP-----EEQGWLCDPCHLAR 118 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---CS-----SSSSCEEHHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccc---cC-----CCCcEeeHHHHHHH
Confidence 47999999999998899999999999999999943 23 35789999999864
No 15
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=94.92 E-value=0.01 Score=62.46 Aligned_cols=46 Identities=13% Similarity=0.301 Sum_probs=38.9
Q ss_pred CCCCCcccCCCCCCCCCCCcccCcccccccccccCCceEcCCCCCC
Q 015607 209 AEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKG 254 (403)
Q Consensus 209 ~~~p~Wvpd~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~ 254 (403)
.....|.+......|..|+..|.-++++.|||+.||.++|..|...
T Consensus 518 ~H~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 518 GHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp GCCEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred CCceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 3456678888899999999998445689999999999999999864
No 16
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.43 E-value=0.042 Score=43.40 Aligned_cols=51 Identities=24% Similarity=0.551 Sum_probs=42.5
Q ss_pred CCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHh
Q 015607 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (403)
....|..|+.+|++|+.|---|+.|-+-||.+|-... ..+.-.|..|+...
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~---------~~~~W~C~VC~k~~ 74 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE---------SNGTWRCKVCSGPS 74 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC---------STTCEEEHHHHSSC
T ss_pred CccchhhhCccccccccCCCcCcccChhhcccccccC---------CCCCEEEeeCchhh
Confidence 3478999999999999999999999999999996432 12678999998753
No 17
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=90.87 E-value=0.27 Score=39.60 Aligned_cols=31 Identities=32% Similarity=0.836 Sum_probs=25.3
Q ss_pred CCCCCCCCCCcccCcccccccccccCCceEcCCC
Q 015607 218 SSASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (403)
Q Consensus 218 ~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~C 251 (403)
.....|..|++.-.++ -..+|| ||.+||...
T Consensus 23 ~~~~rC~~C~kkvgl~--~~f~Cr-Cg~~FC~~H 53 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLA--TSFECR-CGNNFCASH 53 (85)
T ss_dssp CCCCBCSSSCCBCSSS--SCEECT-TCCEECTTT
T ss_pred ccCccchhhCCeeccc--CCeEcC-CCCEecccC
Confidence 4568999999998853 469998 999999865
No 18
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=89.98 E-value=0.24 Score=37.87 Aligned_cols=29 Identities=34% Similarity=0.880 Sum_probs=23.6
Q ss_pred CCCCCCCCCcccCcccccccccccCCceEcCCC
Q 015607 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~C 251 (403)
....|..|++...++ ..+|| ||..||...
T Consensus 14 ~~~rC~~C~kkvgl~---~f~Cr-Cg~~FC~~H 42 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT---GFMCR-CGTTFCGSH 42 (64)
T ss_dssp SCCCCTTTCCCCCTT---CEECS-SSCEECTTT
T ss_pred cCCcChhhCCccCcc---CEEee-cCCEecccc
Confidence 447899999988853 58996 999999865
No 19
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=89.17 E-value=0.46 Score=37.27 Aligned_cols=30 Identities=37% Similarity=0.951 Sum_probs=24.3
Q ss_pred CCCCCCCCCCcccCcccccccccccCCceEcCCC
Q 015607 218 SSASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (403)
Q Consensus 218 ~~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~C 251 (403)
.....|..|++...++ ..+|| ||..||...
T Consensus 23 ~~~~RC~~C~kkvgL~---~f~Cr-Cg~~FCs~H 52 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT---GFKCR-CGSTFCGTH 52 (74)
T ss_dssp CCCCBCSSSCCBCTTT---CEECT-TSCEECTTT
T ss_pred ccCccchhhcCccccc---ceEec-cCCEecccc
Confidence 3568899999998853 58995 999999864
No 20
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=89.10 E-value=0.38 Score=37.72 Aligned_cols=29 Identities=31% Similarity=0.930 Sum_probs=23.7
Q ss_pred CCCCCCCCCcccCcccccccccccCCceEcCCC
Q 015607 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~C 251 (403)
....|..|++...++ ..+|| ||..||...
T Consensus 24 ~~nRC~~CrKkvgL~---gf~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLT---GFDCR-CGNLFCGLH 52 (74)
T ss_dssp CTTBCSSSCCBCGGG---CEECT-TSCEECSSS
T ss_pred cCCcChhhCCccccc---CeecC-CCCEechhc
Confidence 457899999988753 38999 999998865
No 21
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=85.15 E-value=0.66 Score=35.41 Aligned_cols=29 Identities=28% Similarity=0.842 Sum_probs=23.3
Q ss_pred CCCCCCCCCcccCcccccccccccCCceEcCCC
Q 015607 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~C 251 (403)
....|..|++...++ ..+| .||..||...
T Consensus 14 ~~~rC~~C~kkvgl~---~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM---GFKC-KCGSTFCGSH 42 (64)
T ss_dssp CSCSCTTTCCCCTTS---CEEC-TTSCEECSSS
T ss_pred cCCcChhhCCccccc---CeEe-ecCCEecccC
Confidence 347899999987753 5899 5999999865
No 22
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=84.57 E-value=0.096 Score=39.40 Aligned_cols=30 Identities=23% Similarity=0.667 Sum_probs=25.3
Q ss_pred CCCCCCCcccCcccccccccccCCceEcCCCC
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECS 252 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS 252 (403)
..|..|+++|.. ..++.|..|+.+||.+|=
T Consensus 16 ~~C~~C~~~~~~--~~~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 16 RFCYGCQGELKD--QHVYVCAVCQNVFCVDCD 45 (59)
T ss_dssp CEETTTTEECTT--SEEECCTTTTCCBCHHHH
T ss_pred CcccccCcccCC--CccEECCccCcCcccchh
Confidence 469999999963 345889999999999995
No 23
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.02 E-value=0.49 Score=34.12 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=26.8
Q ss_pred CCcccCCCCCCCCCCCcccCcc-cccccccccCCceE
Q 015607 212 PRWLADSSASACMLCGVRFHPI-MCSRHHCRFCGGIF 247 (403)
Q Consensus 212 p~Wvpd~~~~~C~~C~~~F~~~-~~RrHHCR~CG~vf 247 (403)
+.|... ....|..|++.|+++ ..|+|-|..||..+
T Consensus 5 ~~~~~~-~~~~CPrCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 5 SSGQDG-GRKICPRCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp SSSCCS-SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred cccccC-CceeCCcccccccchHHHHhhhhhcCcchh
Confidence 445544 678999999999942 25889999999865
No 24
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.95 E-value=1.4 Score=33.87 Aligned_cols=33 Identities=24% Similarity=0.607 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCcccCccccc-ccccccCCceEcCCC
Q 015607 217 DSSASACMLCGVRFHPIMCS-RHHCRFCGGIFCGEC 251 (403)
Q Consensus 217 d~~~~~C~~C~~~F~~~~~R-rHHCR~CG~vfC~~C 251 (403)
......|..|++.-.+. .. -.+| .||.+||...
T Consensus 12 ~~~~~rC~~C~kk~gL~-~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLELV-QQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp CSCTTBCSSSCCBCCHH-HHHHHCC-SSSCCCCTTT
T ss_pred CccCCcchhhCCeeccc-ccCceEe-cCCCEehhcc
Confidence 34568999999998842 11 3799 7999998865
No 25
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=73.21 E-value=1.5 Score=33.93 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=19.8
Q ss_pred CCCCCCCcccCcccccccccccCCc-eE
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGG-IF 247 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~-vf 247 (403)
-.|..|+..|.....-.-||+.||. |+
T Consensus 29 Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp EECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EECCCCCCcceeCCCCCccCCCCCceEe
Confidence 5799999998854334567888887 44
No 26
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=71.20 E-value=2.6 Score=29.22 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=26.3
Q ss_pred CCCCCCCCCcccCcccccccccccCCceEcCCCCCCc
Q 015607 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGR 255 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~ 255 (403)
....|.+|...|.. ..+......||++||..|....
T Consensus 4 ~~~~C~IC~~~~~~-~~~~~~~~~CgH~fc~~Ci~~~ 39 (55)
T 2ecm_A 4 GSSGCPICLEDIHT-SRVVAHVLPCGHLLHRTCYEEM 39 (55)
T ss_dssp CCCSCTTTCCCCCT-TTSCEEECTTSCEEETTHHHHH
T ss_pred CCCcCcccChhhcC-CCcCeEecCCCCcccHHHHHHH
Confidence 34689999998853 1234455679999999998654
No 27
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=70.88 E-value=3 Score=31.38 Aligned_cols=53 Identities=26% Similarity=0.710 Sum_probs=39.6
Q ss_pred CCCCCCCCCCc-ccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhH
Q 015607 218 SSASACMLCGV-RFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277 (403)
Q Consensus 218 ~~~~~C~~C~~-~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~ 277 (403)
.+...|.+|.+ +|.- ---|.|..|-.-||..|.-+ .+|. .++-.-||..|...
T Consensus 7 ~d~~~C~iC~KTKFAD--G~Gh~C~yCk~r~CaRCGg~-v~lr----~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 7 GDAPTCGICHKTKFAD--GCGHNCSYCQTKFCARCGGR-VSLR----SNKVMWVCNLCRKQ 60 (62)
T ss_dssp SCCCCCSSSSCSCCCS--SCCEEBTTTCCEECTTSEEE-EESS----TTCEEEEEHHHHHH
T ss_pred CCcchhhhhccceecc--CCCccccccCCeeecccCCE-eeec----CCeEEEEehhhhhc
Confidence 34578999997 4542 34689999999999999854 3442 36677899999864
No 28
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=67.88 E-value=2.1 Score=31.24 Aligned_cols=28 Identities=25% Similarity=0.630 Sum_probs=19.2
Q ss_pred CCCCCCCcccCc-----------ccccccccccCCceEc
Q 015607 221 SACMLCGVRFHP-----------IMCSRHHCRFCGGIFC 248 (403)
Q Consensus 221 ~~C~~C~~~F~~-----------~~~RrHHCR~CG~vfC 248 (403)
-.|..|++.|.. ...|.+.|..||+.|-
T Consensus 5 y~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp EECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred ccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 368888888872 1245677888887774
No 29
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=67.42 E-value=3.7 Score=28.47 Aligned_cols=47 Identities=19% Similarity=0.398 Sum_probs=30.2
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHh
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCV 276 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~ 276 (403)
...|.+|...|.. ...-.....||++||..|...... ....|-.|-.
T Consensus 5 ~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~~---------~~~~CP~Cr~ 51 (55)
T 1iym_A 5 GVECAVCLAELED-GEEARFLPRCGHGFHAECVDMWLG---------SHSTCPLCRL 51 (55)
T ss_dssp SCCCTTTCCCCCT-TSCCEECSSSCCEECTTHHHHTTT---------TCCSCSSSCC
T ss_pred CCcCccCCccccC-CCceEECCCCCCcccHHHHHHHHH---------cCCcCcCCCC
Confidence 3689999998874 222222336999999999755421 1345777754
No 30
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=63.64 E-value=5.1 Score=31.26 Aligned_cols=29 Identities=24% Similarity=0.730 Sum_probs=18.3
Q ss_pred CCCCCCCCCcccCc-----------ccccccccccCCceE
Q 015607 219 SASACMLCGVRFHP-----------IMCSRHHCRFCGGIF 247 (403)
Q Consensus 219 ~~~~C~~C~~~F~~-----------~~~RrHHCR~CG~vf 247 (403)
..-.|..|++.|.. ...+.+.|..||+.|
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F 66 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATF 66 (85)
T ss_dssp TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEE
T ss_pred CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEe
Confidence 34578888888872 113445566666665
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=63.14 E-value=1.8 Score=34.53 Aligned_cols=46 Identities=20% Similarity=0.554 Sum_probs=33.2
Q ss_pred CCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHh
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (403)
..|.+|...|. ....|-.||++||..|......-. ...|-.|...+
T Consensus 23 ~~C~IC~~~~~----~p~~~~~CgH~FC~~Ci~~~~~~~--------~~~CP~Cr~~~ 68 (100)
T 3lrq_A 23 FRCFICMEKLR----DARLCPHCSKLCCFSCIRRWLTEQ--------RAQCPHCRAPL 68 (100)
T ss_dssp TBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHHHT--------CSBCTTTCCBC
T ss_pred CCCccCCcccc----CccccCCCCChhhHHHHHHHHHHC--------cCCCCCCCCcC
Confidence 57999999775 345668999999999986543221 15788887654
No 32
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=58.97 E-value=9.2 Score=27.05 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCCCCCCCCcccCcccccccccccCCceEcCCCCCC
Q 015607 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKG 254 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~ 254 (403)
+...|.+|...|..- + --.||+.||..|...
T Consensus 5 ~~~~C~IC~~~~~~p--~---~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP--K---LLPCLHTLCSGCLEA 35 (56)
T ss_dssp CCSSCSSSCSSCBCC--S---CSTTSCCSBTTTCSS
T ss_pred cCCCceEeCCccCCe--E---EcCCCCcccHHHHcc
Confidence 446799999887631 1 246999999999754
No 33
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=58.87 E-value=6.9 Score=28.24 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=10.4
Q ss_pred CCCCCCCCCcccC
Q 015607 219 SASACMLCGVRFH 231 (403)
Q Consensus 219 ~~~~C~~C~~~F~ 231 (403)
..-.|..|++.|.
T Consensus 16 ~~~~C~~C~k~f~ 28 (74)
T 2lce_A 16 KPYKCDRCQASFR 28 (74)
T ss_dssp CSBCCTTSSCCBS
T ss_pred CCeECCCCCceeC
Confidence 3467999999997
No 34
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=58.53 E-value=5.6 Score=32.46 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=29.2
Q ss_pred CCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHh
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (403)
..|.+|...|.- ..--..||++||..|...... ..|..|...+
T Consensus 23 ~~C~IC~~~~~~----pv~~~~CgH~fC~~Ci~~~~~-----------~~CP~Cr~~~ 65 (117)
T 1jm7_B 23 LRCSRCTNILRE----PVCLGGCEHIFCSNCVSDCIG-----------TGCPVCYTPA 65 (117)
T ss_dssp TSCSSSCSCCSS----CBCCCSSSCCBCTTTGGGGTT-----------TBCSSSCCBC
T ss_pred CCCCCCChHhhC----ccEeCCCCCHHHHHHHHHHhc-----------CCCcCCCCcC
Confidence 579999887652 122227999999999865421 5688786543
No 35
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=58.05 E-value=6.4 Score=26.63 Aligned_cols=10 Identities=40% Similarity=1.089 Sum_probs=8.1
Q ss_pred CCCCCCcccC
Q 015607 222 ACMLCGVRFH 231 (403)
Q Consensus 222 ~C~~C~~~F~ 231 (403)
.|..|++.|.
T Consensus 3 ~C~~C~~~f~ 12 (57)
T 1bbo_A 3 ICEECGIRXK 12 (57)
T ss_dssp BCTTTCCBCS
T ss_pred cCCCCcCcCC
Confidence 5888888886
No 36
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=58.00 E-value=7.5 Score=28.97 Aligned_cols=50 Identities=20% Similarity=0.364 Sum_probs=33.3
Q ss_pred CCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
....|.+|...|.. .....--.||++||..|...... ..+.|-.|...+.
T Consensus 14 ~~~~C~IC~~~~~~--~~~~~~~~C~H~fc~~Ci~~~~~---------~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 14 SGLECPVCKEDYAL--GESVRQLPCNHLFHDSCIVPWLE---------QHDSCPVCRKSLT 63 (78)
T ss_dssp SSCCCTTTTSCCCT--TSCEEECTTSCEEETTTTHHHHT---------TTCSCTTTCCCCC
T ss_pred CCCCCeeCCccccC--CCCEEEeCCCCeecHHHHHHHHH---------cCCcCcCcCCccC
Confidence 34689999998863 12222235999999999865532 1257888876654
No 37
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.58 E-value=3.5 Score=30.74 Aligned_cols=49 Identities=18% Similarity=0.434 Sum_probs=33.7
Q ss_pred CCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHh
Q 015607 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (403)
+...|.+|...|.. ......-.||++||..|....... ...|-.|...+
T Consensus 22 ~~~~C~IC~~~~~~--~~~~~~l~C~H~fh~~Ci~~w~~~---------~~~CP~Cr~~~ 70 (75)
T 1x4j_A 22 EQTLCVVCMCDFES--RQLLRVLPCNHEFHAKCVDKWLKA---------NRTCPICRADS 70 (75)
T ss_dssp SCCEETTTTEECCB--TCEEEEETTTEEEETTHHHHHHHH---------CSSCTTTCCCC
T ss_pred CCCCCeECCcccCC--CCeEEEECCCCHhHHHHHHHHHHc---------CCcCcCcCCcC
Confidence 45789999998873 234445569999999998665321 24687776544
No 38
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=56.84 E-value=6.7 Score=26.88 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=8.0
Q ss_pred CCCCCCcccC
Q 015607 222 ACMLCGVRFH 231 (403)
Q Consensus 222 ~C~~C~~~F~ 231 (403)
.|..|++.|.
T Consensus 4 ~C~~C~~~f~ 13 (60)
T 2adr_A 4 VCEVCTRAFA 13 (60)
T ss_dssp CCTTTCCCBS
T ss_pred cCCCCccccC
Confidence 5888888886
No 39
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=56.84 E-value=5 Score=31.87 Aligned_cols=56 Identities=16% Similarity=0.392 Sum_probs=37.1
Q ss_pred CCCCCCCcccCcccccccccccCCce-----EcCCCCCCcccccccCCCCCccccCcchHhHhcc
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGI-----FCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~v-----fC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (403)
..|+.|+.+... ..+.+||..|++- ||..|-..-..++. - ..-.--|..|..++++
T Consensus 3 ~~CP~C~~~l~~-~~~~~~C~~C~~~~~~~afCPeCgq~Le~lkA--C-GA~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 3 ITCPVCHHALER-NGDTAHCETCAKDFSLQALCPDCRQPLQVLKA--C-GAVDYFCQNGHGLISK 63 (81)
T ss_dssp CCCSSSCSCCEE-CSSEEECTTTCCEEEEEEECSSSCSCCCEEEE--T-TEEEECCTTTTCCCCT
T ss_pred CCCCCCCCcccc-CCCceECccccccCCCcccCcchhhHHHHHHh--c-CCcCeeeccCCCEeec
Confidence 468888888775 3567789988864 78888765444432 1 1125677888877654
No 40
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=56.06 E-value=4 Score=29.76 Aligned_cols=50 Identities=16% Similarity=0.410 Sum_probs=33.3
Q ss_pred CCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
....|.+|...|.. ......-.||++||..|....... ...|-.|...+.
T Consensus 13 ~~~~C~IC~~~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 13 TEEKCTICLSILEE--GEDVRRLPCMHLFHQVCVDQWLIT---------NKKCPICRVDIE 62 (69)
T ss_dssp CCCSBTTTTBCCCS--SSCEEECTTSCEEEHHHHHHHHHH---------CSBCTTTCSBSC
T ss_pred CCCCCeeCCccccC--CCcEEEeCCCCHHHHHHHHHHHHc---------CCCCcCcCcccc
Confidence 34689999998852 233344569999999998654322 234888876554
No 41
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.79 E-value=7.9 Score=29.25 Aligned_cols=27 Identities=26% Similarity=0.680 Sum_probs=20.6
Q ss_pred CCCCCC--CCcccCcccccccccccCCceEcCC
Q 015607 220 ASACML--CGVRFHPIMCSRHHCRFCGGIFCGE 250 (403)
Q Consensus 220 ~~~C~~--C~~~F~~~~~RrHHCR~CG~vfC~~ 250 (403)
...|.. |++. .++ ..+|+.|+..||.+
T Consensus 12 ~~~Cs~~~Ck~~-~ll---~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 12 TNKCERAGCRQR-EMM---KLTCERCSRNFCIK 40 (63)
T ss_dssp CCCCCSTTCCCC-CSS---CCBCSSSCCBCCHH
T ss_pred CCCCCccCCCCC-Ccc---ceECCCCCcccCcc
Confidence 367887 9986 332 47999999999963
No 42
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=55.18 E-value=5.5 Score=26.99 Aligned_cols=11 Identities=36% Similarity=0.930 Sum_probs=8.8
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.|..|++.|.
T Consensus 5 ~~C~~C~~~f~ 15 (57)
T 3uk3_C 5 RECSYCGKFFR 15 (57)
T ss_dssp CBCTTTCCBCS
T ss_pred ccCCCCcchhC
Confidence 46888888887
No 43
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=54.57 E-value=6.2 Score=29.45 Aligned_cols=46 Identities=22% Similarity=0.586 Sum_probs=30.9
Q ss_pred CCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhH
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~ 277 (403)
..|.+|...|.- ...-..||++||..|......- ...+.|-.|...
T Consensus 16 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~-------~~~~~CP~Cr~~ 61 (74)
T 2yur_A 16 LLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLE-------SDEHTCPTCHQN 61 (74)
T ss_dssp GSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHH-------SSSSCCSSSCCS
T ss_pred CCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHh-------cCCCcCCCCCCc
Confidence 679999887752 2233459999999998655331 124578888764
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=54.25 E-value=4.6 Score=31.18 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=32.8
Q ss_pred CCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
+...|.+|-.+|+.--.+-.-| .||+.||..|...... .....|-.|-..+.
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~--------~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRT--------DENGLCPACRKPYP 61 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTT--------SSCSBCTTTCCBCS
T ss_pred cCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHh--------cCCCCCCCCCCccC
Confidence 3468999999886311112224 5999999999753211 12467888876554
No 45
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=51.99 E-value=7.1 Score=26.64 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=8.6
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (54)
T 2eps_A 13 YICQSCGKGFS 23 (54)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 46888888886
No 46
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.91 E-value=5 Score=30.46 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=34.4
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
...|.+|...|..- .+.-.--.||++||..|......-. .....|-.|-..+.
T Consensus 15 ~~~C~IC~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~~~------~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 15 VLECPICMESFTEE-QLRPKLLHCGHTICRQCLEKLLASS------INGVRCPFCSKITR 67 (88)
T ss_dssp CCBCTTTCCBCCTT-SSCEEECSSSCEEEHHHHHHHHHHC------SSCBCCTTTCCCBC
T ss_pred CCCCccCCcccccc-CCCeEECCCCChhhHHHHHHHHHcC------CCCcCCCCCCCccc
Confidence 36899999988741 2212233699999999986553321 13467888876543
No 47
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=51.88 E-value=4.5 Score=30.11 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=34.9
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
...|.+|...|.-- .. -.||++||..|......-.. ........|-.|...+.
T Consensus 12 ~~~C~IC~~~~~~p--~~---l~CgH~fC~~Ci~~~~~~~~--~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 12 EVTCPICLELLTEP--LS---LDCGHSLCRACITVSNKEAV--TSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCEETTTTEECSSC--CC---CSSSCCCCHHHHSCCCCCCS--SSCCCCCCCSSSCCCCC
T ss_pred CCCCcCCCcccCCe--eE---CCCCCHHHHHHHHHHHHhcc--cCCCCCCcCCCCCCcCC
Confidence 36799999988631 11 26999999999876543211 11234677888887654
No 48
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=51.41 E-value=8.3 Score=27.85 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=32.5
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhcc
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (403)
...|.+|...|.. ....-.||++||..|...... ....|..|...+..
T Consensus 5 ~~~C~IC~~~~~~----~~~~~~C~H~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSN----YSMALPCLHAFCYVCITRWIR---------QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCS----CEEETTTTEEESTTHHHHHHH---------HSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccC----CcEecCCCCeeHHHHHHHHHh---------CcCcCcCCChhhHh
Confidence 4689999988752 123456999999999865432 12478888766543
No 49
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=50.91 E-value=7.7 Score=27.89 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=7.8
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.|..|++.|.
T Consensus 15 ~~C~~C~k~f~ 25 (72)
T 1x6e_A 15 YGCVECGKAFS 25 (72)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCCccC
Confidence 45777777776
No 50
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=50.26 E-value=8.2 Score=27.50 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=7.3
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.|..|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (70)
T 1x5w_A 10 EKCSECSYSCS 20 (70)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCcccC
Confidence 35777777765
No 51
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.86 E-value=8.6 Score=28.67 Aligned_cols=52 Identities=21% Similarity=0.460 Sum_probs=33.3
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
...|.+|...|.-- . . -.||++||..|.......... ......|-.|...+.
T Consensus 19 ~~~C~IC~~~~~~p--~--~-~~CgH~fC~~Ci~~~~~~~~~---~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 19 EVTCPICLELLTQP--L--S-LDCGHSFCQACLTANHKKSML---DKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCTTTCSCCSSC--B--C-CSSSCCBCTTHHHHHHHHHHH---TTSCCCCTTTCCSSC
T ss_pred CCCCCCCCcccCCc--e--e-CCCCCHHHHHHHHHHHHHhhc---CCCCCcCCCCCCccC
Confidence 36899999987631 1 1 269999999998654322100 123567888876654
No 52
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=49.28 E-value=11 Score=29.48 Aligned_cols=28 Identities=36% Similarity=0.742 Sum_probs=21.3
Q ss_pred CCCCCC--CCcccCcccccccccccCCceEcCCC
Q 015607 220 ASACML--CGVRFHPIMCSRHHCRFCGGIFCGEC 251 (403)
Q Consensus 220 ~~~C~~--C~~~F~~~~~RrHHCR~CG~vfC~~C 251 (403)
...|.. |++. .+ -...|+.||++||...
T Consensus 14 g~~Cs~~~C~~~-df---lpf~C~~C~~~FC~~H 43 (75)
T 1wys_A 14 GQHCQVQHCRQR-DF---LPFVCDGCSGIFCLEH 43 (75)
T ss_dssp CCCCSCTTTCCC-SC---CCEECTTTCCEECSTT
T ss_pred CCCcCcccCCCc-cc---eeeECcccCcCcCccc
Confidence 367887 9986 32 2578999999999854
No 53
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=48.72 E-value=5.2 Score=33.86 Aligned_cols=31 Identities=29% Similarity=0.598 Sum_probs=21.0
Q ss_pred CCCCCCCc-ccCcccccccccccCCceEcCCC
Q 015607 221 SACMLCGV-RFHPIMCSRHHCRFCGGIFCGEC 251 (403)
Q Consensus 221 ~~C~~C~~-~F~~~~~RrHHCR~CG~vfC~~C 251 (403)
..|..|++ .+.-.....+||+.||..|-+.-
T Consensus 61 ytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGA 92 (116)
T 3cc2_Z 61 HACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 92 (116)
T ss_dssp EECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred CcCCCCCCceeEecCceeEECCCCCCEEECCC
Confidence 67999998 22211223589999999986643
No 54
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.52 E-value=22 Score=25.65 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=10.1
Q ss_pred CCCCCCCCCcccC
Q 015607 219 SASACMLCGVRFH 231 (403)
Q Consensus 219 ~~~~C~~C~~~F~ 231 (403)
..-.|..|++.|.
T Consensus 17 ~~~~C~~C~~~f~ 29 (77)
T 2cot_A 17 RRYKCDECGKSFS 29 (77)
T ss_dssp CSSBCSSSCCBCS
T ss_pred CCEECCCCCcccC
Confidence 3467889999887
No 55
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.28 E-value=5.8 Score=28.38 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=23.4
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcc
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRS 256 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~ 256 (403)
...|.+|...|.-- . . -.||++||..|.....
T Consensus 20 ~~~C~IC~~~~~~p--~--~-~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 20 EVICPICLDILQKP--V--T-IDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCBCTTTCSBCSSC--E--E-CTTSSEECHHHHHHHH
T ss_pred CCCCCcCCchhCCe--E--E-eCCCCcchHHHHHHHH
Confidence 46899999877631 1 1 2799999999986553
No 56
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.12 E-value=6.7 Score=30.75 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=9.0
Q ss_pred CCCCCCCccc-C
Q 015607 221 SACMLCGVRF-H 231 (403)
Q Consensus 221 ~~C~~C~~~F-~ 231 (403)
-.|..|++.| .
T Consensus 35 ~~C~~C~k~F~~ 46 (96)
T 2ctd_A 35 VSCPTCQAVGRK 46 (96)
T ss_dssp EECTTTCSCEES
T ss_pred cCCCCCCCCccc
Confidence 4689999999 5
No 57
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=48.11 E-value=6.1 Score=28.03 Aligned_cols=28 Identities=25% Similarity=0.636 Sum_probs=16.9
Q ss_pred CCCCCCCcccCcc--------cccccccccCCceEc
Q 015607 221 SACMLCGVRFHPI--------MCSRHHCRFCGGIFC 248 (403)
Q Consensus 221 ~~C~~C~~~F~~~--------~~RrHHCR~CG~vfC 248 (403)
-.|..|++.|... ..+.+.|..||+.|-
T Consensus 15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred ccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 4688888887621 124456666666653
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.49 E-value=8.6 Score=29.39 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=38.4
Q ss_pred CCCcccCCCCCCCCCCCcccCcc----------cccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHh
Q 015607 211 PPRWLADSSASACMLCGVRFHPI----------MCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (403)
Q Consensus 211 ~p~Wvpd~~~~~C~~C~~~F~~~----------~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (403)
.+.|.-|.+...|.+|...|... ......-..||++|+..|....... ...|..|-..+
T Consensus 6 ~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~~ 74 (81)
T 2ecl_A 6 SGMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---------NNRCPLCQQDW 74 (81)
T ss_dssp CCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT---------CCBCTTTCCBC
T ss_pred eEEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh---------CCCCCCcCCCc
Confidence 45677777788999999998530 0111122359999999997655321 24788886544
No 59
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.44 E-value=3.7 Score=30.04 Aligned_cols=46 Identities=22% Similarity=0.506 Sum_probs=33.3
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhcc
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (403)
...|.+|...|.. .--.||++||..|...... ....|..|...+..
T Consensus 15 ~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 15 EEECCICMDGRAD------LILPCAHSFCQKCIDKWSD---------RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCSSSCCSCCS------EEETTTEEECHHHHHHSSC---------CCSSCHHHHHCTTC
T ss_pred CCCCeeCCcCccC------cccCCCCcccHHHHHHHHH---------CcCcCCCcCCcccC
Confidence 4689999987763 3356999999999764321 35679999876654
No 60
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.54 E-value=6.3 Score=29.13 Aligned_cols=48 Identities=17% Similarity=0.382 Sum_probs=32.7
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhcc
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (403)
...|.+|...|.- ...-..||++||..|....... .+.|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 15 YILCSICKGYLID----ATTITECLHTFCKSCIVRHFYY---------SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGSCTTTSSCCSS----CEECSSSCCEECHHHHHHHHHH---------CSSCTTTCCCCCS
T ss_pred CCCCCCCChHHHC----cCEECCCCCHHHHHHHHHHHHc---------CCcCCCcCcccCc
Confidence 3689999887752 2233479999999998654321 3568888766543
No 61
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=45.51 E-value=6.8 Score=31.64 Aligned_cols=47 Identities=19% Similarity=0.413 Sum_probs=32.3
Q ss_pred CCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhcc
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (403)
..|.+|...|.-- . --.||+.||..|...... .....|-.|...+..
T Consensus 16 ~~C~iC~~~~~~p--~---~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILVEP--V---TLPCNHTLCKPCFQSTVE--------KASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCSSC--E---ECTTSCEECHHHHCCCCC--------TTTSBCTTTCCBCHH
T ss_pred CCCccCCcccCce--e---EcCCCCHHhHHHHHHHHh--------HCcCCCCCCCcccCc
Confidence 5799999877631 1 127999999999865432 123678888876543
No 62
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=45.48 E-value=5 Score=34.67 Aligned_cols=47 Identities=19% Similarity=0.411 Sum_probs=33.1
Q ss_pred CCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
..|.+|...|.- ...+..||++||..|......- ....|..|-..+.
T Consensus 55 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKN----TMTTKECLHRFCADCIITALRS--------GNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHHT--------TCCBCTTTCCBCC
T ss_pred CCCcccChHhhC----cCEeCCCCChhHHHHHHHHHHh--------CcCCCCCCCCcCC
Confidence 479999887762 2344589999999998655321 2466888887664
No 63
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=44.57 E-value=7.6 Score=28.78 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=18.0
Q ss_pred CCCCCCCCcccCcccccccccccCC
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCG 244 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG 244 (403)
...|..|...... |-..||.||
T Consensus 19 k~ICrkC~ARnp~---~A~~CRKCg 40 (56)
T 2ayj_A 19 KKVCRKCGALNPI---RATKCRRCH 40 (56)
T ss_dssp CEEETTTCCEECT---TCSSCTTTC
T ss_pred hhhhccccCcCCc---ccccccCCC
Confidence 3679999998773 889999887
No 64
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.19 E-value=7.6 Score=28.42 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=32.5
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
...|.+|...|.-- .. -.||++||..|......- ......|-.|...+.
T Consensus 20 ~~~C~IC~~~~~~~--~~---~~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 20 EVICPICLDILQKP--VT---IDCGHNFCLKCITQIGET------SCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCBCTTTCSBCSSE--EE---CTTCCEEEHHHHHHHCSS------SCSCCCCSSSCCCCC
T ss_pred CCEeccCCcccCCe--EE---cCCCChhhHHHHHHHHHc------CCCCCCCCCCCCcCC
Confidence 46899999987631 11 279999999998654321 123567888876543
No 65
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=44.06 E-value=12 Score=26.13 Aligned_cols=11 Identities=18% Similarity=0.670 Sum_probs=7.8
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.|..|++.|.
T Consensus 11 ~~C~~C~k~f~ 21 (66)
T 2drp_A 11 YRCKVCSRVYT 21 (66)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCcchhC
Confidence 35777887776
No 66
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=41.74 E-value=10 Score=24.98 Aligned_cols=11 Identities=45% Similarity=1.069 Sum_probs=7.7
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (48)
T 2epr_A 13 VACEICGKIFR 23 (48)
T ss_dssp EEETTTTEEES
T ss_pred eeCCCCCcccC
Confidence 45777777776
No 67
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=41.73 E-value=6.7 Score=30.81 Aligned_cols=46 Identities=22% Similarity=0.500 Sum_probs=31.1
Q ss_pred CCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
..|.+|...|.- ......||+.||..|...... ....|-.|...+.
T Consensus 23 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 23 LRCGICFEYFNI----AMIIPQCSHNYCSLCIRKFLS---------YKTQCPTCCVTVT 68 (99)
T ss_dssp TBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHT---------TCCBCTTTCCBCC
T ss_pred CCcccCChhhCC----cCEECCCCCHhhHHHHHHHHH---------CCCCCCCCCCcCC
Confidence 579999987762 222347999999999765432 1257888876543
No 68
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.68 E-value=7.4 Score=28.63 Aligned_cols=47 Identities=23% Similarity=0.517 Sum_probs=31.4
Q ss_pred CCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
+...|.+|...|..- . --.||++||..|...... ....|-.|...+.
T Consensus 14 ~~~~C~IC~~~~~~~----~-~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVHP----V-SLPCKHVFCYLCVKGASW---------LGKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSSE----E-EETTTEEEEHHHHHHCTT---------CSSBCSSSCCBCC
T ss_pred CCCCCccCCcccCCC----E-EccCCCHHHHHHHHHHHH---------CCCcCcCcCchhC
Confidence 346899999877531 1 126999999999754322 1257888876554
No 69
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=41.66 E-value=6.3 Score=31.54 Aligned_cols=47 Identities=26% Similarity=0.533 Sum_probs=32.2
Q ss_pred CCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhcc
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (403)
..|.+|...|.- ....-.||++||..|....... ...|-.|-..+..
T Consensus 16 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFID----ATTIIECLHSFCKTCIVRYLET---------SKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHTS---------CSBCTTTCCBSCS
T ss_pred CCCccCChHHhC----cCEeCCCCChhhHHHHHHHHHh---------CCcCcCCCccccc
Confidence 579999887652 2333489999999997654321 2678888776543
No 70
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=41.02 E-value=16 Score=27.64 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=17.8
Q ss_pred CCCCCCCcccCcccccccccccCCc
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGG 245 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~ 245 (403)
-.|..|+..|.+-....-.|+.||.
T Consensus 22 Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 22 YLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred EECCCCCCeeecCCCCceECCCCCc
Confidence 6799999999853223466777764
No 71
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.75 E-value=6.2 Score=30.54 Aligned_cols=11 Identities=27% Similarity=0.627 Sum_probs=8.3
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.|..|++.|.
T Consensus 25 ~~C~~C~k~f~ 35 (98)
T 2gqj_A 25 AVCPTCNVVTR 35 (98)
T ss_dssp CCCTTTCCCCS
T ss_pred cCCCCCCCChh
Confidence 46888888876
No 72
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=40.56 E-value=14 Score=26.74 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=7.5
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.|..|++.|.
T Consensus 16 ~~C~~C~k~f~ 26 (77)
T 2ct1_A 16 YECYICHARFT 26 (77)
T ss_dssp EECTTTCCEES
T ss_pred eECCCcCchhC
Confidence 45777777776
No 73
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=40.38 E-value=11 Score=30.19 Aligned_cols=28 Identities=21% Similarity=0.596 Sum_probs=20.8
Q ss_pred CCCCCC--CCcccCcccccccccccCCceEcCCC
Q 015607 220 ASACML--CGVRFHPIMCSRHHCRFCGGIFCGEC 251 (403)
Q Consensus 220 ~~~C~~--C~~~F~~~~~RrHHCR~CG~vfC~~C 251 (403)
...|.. |++. .++ ..+|+.||..||.+.
T Consensus 25 ~~~C~~~~Ck~~-~~l---~f~C~~C~~~FC~~H 54 (86)
T 1wfe_A 25 SYSCSFKGCTDV-ELV---AVICPYCEKNFCLRH 54 (86)
T ss_dssp CEECCSTTCCCE-ESS---CEECTTTCCEECGGG
T ss_pred CCCCCCcCCCCC-Ccc---ceECCCCCccccccc
Confidence 367887 9986 222 469999999999754
No 74
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=39.70 E-value=5.9 Score=28.79 Aligned_cols=52 Identities=19% Similarity=0.542 Sum_probs=33.5
Q ss_pred CCCCCCCCCcccCccc--ccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 219 SASACMLCGVRFHPIM--CSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~--~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
+...|.+|...|..-. .+......||++||..|......- ...|-.|-..+.
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKIN 62 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH---------CSBCTTTCCBCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc---------CCCCCCCCCccC
Confidence 3468999999876310 122245689999999998654321 246777765543
No 75
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.69 E-value=9.9 Score=27.98 Aligned_cols=49 Identities=20% Similarity=0.451 Sum_probs=32.2
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
...|.+|...|.. . ....--.||++||..|...+... .+.|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~-~-~~~~~~~C~H~f~~~Ci~~~~~~---------~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLEDFKP-R-DELGICPCKHAFHRKCLIKWLEV---------RKVCPLCNMPVL 63 (74)
T ss_dssp SCBCSSSCCBCCS-S-SCEEEETTTEEEEHHHHHHHHHH---------CSBCTTTCCBCS
T ss_pred CCCCcCCCcccCC-C-CcEEEcCCCCEecHHHHHHHHHc---------CCcCCCcCcccc
Confidence 4689999998863 1 22211259999999998654321 237888876554
No 76
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.54 E-value=13 Score=26.96 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=7.3
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.|..|++.|.
T Consensus 8 ~~C~~C~k~f~ 18 (78)
T 2d9h_A 8 LQCEICGFTCR 18 (78)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCeeC
Confidence 35777777775
No 77
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.69 E-value=12 Score=26.72 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=17.4
Q ss_pred CCCCCCCcc-cCcccccccccccCCceE
Q 015607 221 SACMLCGVR-FHPIMCSRHHCRFCGGIF 247 (403)
Q Consensus 221 ~~C~~C~~~-F~~~~~RrHHCR~CG~vf 247 (403)
..|+.|+.. |-.-...|++|..||.++
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 578888873 321123578888888764
No 78
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.87 E-value=6.7 Score=28.17 Aligned_cols=51 Identities=20% Similarity=0.548 Sum_probs=32.2
Q ss_pred CCCCCCCCCcccCccc--ccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHh
Q 015607 219 SASACMLCGVRFHPIM--CSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~--~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (403)
+...|.+|...|..-. .+.-.-..||++||..|....... ...|-.|-..+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~ 66 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKI 66 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---------CSSCTTTCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---------CCCCCCCCCcc
Confidence 3478999999876310 122245689999999998654321 24676665443
No 79
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.45 E-value=8.9 Score=29.95 Aligned_cols=55 Identities=25% Similarity=0.403 Sum_probs=31.8
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcc--hHhH
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDV--CCVR 277 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~--C~~~ 277 (403)
...|.+|-..|.. ..-..-..||+.||..|.......-.. .+......|-. |...
T Consensus 5 ~~~C~IC~~~~~~--~~~~~l~~CgH~FC~~Cl~~~~~~~i~-~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPV--EQMTTIAQCQCIFCTLCLKQYVELLIK-EGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBG--GGEEEETTTTEEEEHHHHHHHHHHHHH-HCSCCCEECSCTTCSSC
T ss_pred CcCCcccCccccc--ccceEcCCCCCcccHHHHHHHHHHHhh-cCCcccccCccccCCCC
Confidence 4579999887652 122222369999999998765443111 11112345766 7654
No 80
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.07 E-value=11 Score=28.30 Aligned_cols=45 Identities=20% Similarity=0.488 Sum_probs=30.8
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHh
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (403)
...|.+|...|.-- .--.||++||..|...... ....|..|...+
T Consensus 15 ~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~ 59 (81)
T 2csy_A 15 PFRCFICRQAFQNP-----VVTKCRHYFCESCALEHFR---------ATPRCYICDQPT 59 (81)
T ss_dssp CSBCSSSCSBCCSE-----EECTTSCEEEHHHHHHHHH---------HCSBCSSSCCBC
T ss_pred CCCCcCCCchhcCe-----eEccCCCHhHHHHHHHHHH---------CCCcCCCcCccc
Confidence 46899999887631 1247999999999765432 134677776654
No 81
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=36.91 E-value=5.9 Score=28.02 Aligned_cols=51 Identities=20% Similarity=0.516 Sum_probs=32.4
Q ss_pred CCCCCCCCcccCcc--cccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 220 ASACMLCGVRFHPI--MCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 220 ~~~C~~C~~~F~~~--~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
...|.+|...|..- ..+.-....||++||..|......- ...|-.|-..+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKIN 55 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---------CSBCTTTCCBCT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---------CCCCCCCCccCC
Confidence 35799999987631 0122245689999999998654321 346777765443
No 82
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=36.80 E-value=8.1 Score=31.68 Aligned_cols=46 Identities=17% Similarity=0.352 Sum_probs=31.4
Q ss_pred CCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
..|.+|...|.-- . --.||+.||..|...... .....|..|-..+.
T Consensus 53 ~~C~IC~~~~~~p----~-~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 53 FQCICCQELVFRP----I-TTVCQHNVCKDCLDRSFR--------AQVFSCPACRYDLG 98 (124)
T ss_dssp TBCTTTSSBCSSE----E-ECTTSCEEEHHHHHHHHH--------TTCCBCTTTCCBCC
T ss_pred CCCCcCChHHcCc----E-EeeCCCcccHHHHHHHHh--------HCcCCCCCCCccCC
Confidence 5799999877631 1 127999999999765432 13457888876553
No 83
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=35.92 E-value=6.3 Score=31.69 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=34.4
Q ss_pred CCCCCCCcccCccc----------c---cccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 221 SACMLCGVRFHPIM----------C---SRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 221 ~~C~~C~~~F~~~~----------~---RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
..|.+|...|..-. . ..-..-.||++||..|...+.... .......|-.|-..+.
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~----~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG----NKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT----CCSSCCBCTTTCCBSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc----cCCCCCcCCCCCCccC
Confidence 58999999885310 0 011134699999999987664321 1134568888876543
No 84
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=35.35 E-value=8.6 Score=29.58 Aligned_cols=48 Identities=21% Similarity=0.534 Sum_probs=30.9
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHh
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (403)
.-.|.+|...|.- ...-..||+.||..|......- .....|-.|-..+
T Consensus 13 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~-------~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLE-------SDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHH-------CTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHh-------cCCCcCcCCCCcC
Confidence 3689999987752 2223349999999997654321 1235788887543
No 85
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.93 E-value=3.2 Score=30.15 Aligned_cols=47 Identities=19% Similarity=0.432 Sum_probs=31.4
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
...|.+|...|.-- .. -.||++||..|...... .....|..|...+.
T Consensus 15 ~~~C~IC~~~~~~p-~~----~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP-KQ----TECGHRFCESCMAALLS--------SSSPKCTACQESIV 61 (66)
T ss_dssp CEECTTTCCEESSC-CC----CSSSCCCCHHHHHHHHT--------TSSCCCTTTCCCCC
T ss_pred CCCCCCCChHhcCe-eE----CCCCCHHHHHHHHHHHH--------hCcCCCCCCCcCCC
Confidence 36799999877631 11 48999999999765432 22456777766543
No 86
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=34.86 E-value=14 Score=27.53 Aligned_cols=20 Identities=30% Similarity=0.743 Sum_probs=14.8
Q ss_pred CCCCCCCCcccCcccccccc-cccCC
Q 015607 220 ASACMLCGVRFHPIMCSRHH-CRFCG 244 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHH-CR~CG 244 (403)
...|..|+. + .+.|| |..||
T Consensus 30 l~~c~~cGe----~-~~~H~vc~~CG 50 (60)
T 3v2d_5 30 LVPCPECKA----M-KPPHTVCPECG 50 (60)
T ss_dssp CEECTTTCC----E-ECTTSCCTTTC
T ss_pred eeECCCCCC----e-ecceEEcCCCC
Confidence 467999998 2 46666 88887
No 87
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=34.65 E-value=12 Score=29.59 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=21.2
Q ss_pred CCCCCCCcc--cCcccccccccccCCceEcCCC
Q 015607 221 SACMLCGVR--FHPIMCSRHHCRFCGGIFCGEC 251 (403)
Q Consensus 221 ~~C~~C~~~--F~~~~~RrHHCR~CG~vfC~~C 251 (403)
..|..|+.. |.. .....+|+.||..|-..-
T Consensus 28 y~Cp~CG~~~v~r~-atGiW~C~~Cg~~~agga 59 (83)
T 1vq8_Z 28 HACPNCGEDRVDRQ-GTGIWQCSYCDYKFTGGS 59 (83)
T ss_dssp EECSSSCCEEEEEE-ETTEEEETTTCCEEECCS
T ss_pred CcCCCCCCcceecc-CCCeEECCCCCCEecCCE
Confidence 579999983 222 235688999999987643
No 88
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.39 E-value=31 Score=25.40 Aligned_cols=36 Identities=28% Similarity=0.586 Sum_probs=26.1
Q ss_pred CCCCCCCCcccCccc-cccccccc--CCceEcCCCCCCc
Q 015607 220 ASACMLCGVRFHPIM-CSRHHCRF--CGGIFCGECSKGR 255 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~-~RrHHCR~--CG~vfC~~CS~~~ 255 (403)
...|+.|+...-... .-.-.|+. ||..||..|....
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 468999998765321 22345998 9999999998653
No 89
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.95 E-value=13 Score=29.54 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=30.6
Q ss_pred CCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHh
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (403)
..|.+|...|.-- . --.||++||..|....... ......|-.|...+
T Consensus 22 ~~C~IC~~~~~~p--~---~~~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 22 LECPICLELIKEP--V---STKCDHIFCKFCMLKLLNQ------KKGPSQCPLCKNDI 68 (112)
T ss_dssp TSCSSSCCCCSSC--C---BCTTSCCCCSHHHHHHHHS------SSSSCCCTTTSCCC
T ss_pred CCCcccChhhcCe--E---ECCCCCHHHHHHHHHHHHh------CCCCCCCcCCCCcC
Confidence 4699999877531 1 1369999999997654332 11235788886543
No 90
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=33.93 E-value=30 Score=25.66 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=18.3
Q ss_pred CCCCCCCcccCcc-----------cccccccccCCceEc
Q 015607 221 SACMLCGVRFHPI-----------MCSRHHCRFCGGIFC 248 (403)
Q Consensus 221 ~~C~~C~~~F~~~-----------~~RrHHCR~CG~vfC 248 (403)
-.|..|++.|... ..+.+.|..||+.|-
T Consensus 9 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 47 (96)
T 2dmd_A 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAA 47 (96)
T ss_dssp CCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEES
T ss_pred eECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccC
Confidence 5799999999721 123455777777663
No 91
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.57 E-value=13 Score=25.68 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=22.9
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCc
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGR 255 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~ 255 (403)
...|.+|...|..- .. -.||++||..|....
T Consensus 15 ~~~C~IC~~~~~~p--~~---~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 15 EASCSVCLEYLKEP--VI---IECGHNFCKACITRW 45 (58)
T ss_dssp CCBCSSSCCBCSSC--CC---CSSCCCCCHHHHHHH
T ss_pred CCCCccCCcccCcc--Ee---CCCCCccCHHHHHHH
Confidence 36899999987631 11 369999999997654
No 92
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.67 E-value=19 Score=26.13 Aligned_cols=23 Identities=30% Similarity=0.710 Sum_probs=16.7
Q ss_pred CCCCCCCcccCcccccccccccCCce
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGI 246 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~v 246 (403)
..|+.|+..-. .+..+||.||..
T Consensus 15 ~iCpkC~a~~~---~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGATNP---WGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCEEC---TTCSSCSSSSSC
T ss_pred ccCCCCCCcCC---CCceecCCCCCc
Confidence 56888888722 477888888764
No 93
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.51 E-value=18 Score=29.98 Aligned_cols=10 Identities=40% Similarity=1.059 Sum_probs=7.8
Q ss_pred CCCCCCCccc
Q 015607 221 SACMLCGVRF 230 (403)
Q Consensus 221 ~~C~~C~~~F 230 (403)
..|..|+-.|
T Consensus 68 ~~C~~CG~~F 77 (105)
T 2gmg_A 68 AQCRKCGFVF 77 (105)
T ss_dssp CBBTTTCCBC
T ss_pred cChhhCcCee
Confidence 4688888887
No 94
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=32.28 E-value=23 Score=26.93 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=17.4
Q ss_pred CCCCCCCCcccCcc-----------cccccccccCCceE
Q 015607 220 ASACMLCGVRFHPI-----------MCSRHHCRFCGGIF 247 (403)
Q Consensus 220 ~~~C~~C~~~F~~~-----------~~RrHHCR~CG~vf 247 (403)
.-.|..|++.|... ..+.+.|..|++.|
T Consensus 17 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 55 (106)
T 2ee8_A 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF 55 (106)
T ss_dssp CCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBC
T ss_pred CeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchh
Confidence 35688888888621 12445677776665
No 95
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.09 E-value=12 Score=27.75 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=33.6
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
...|.+|...|..- .. -.||++||..|......... .......|-.|...+.
T Consensus 19 ~~~C~IC~~~~~~p----~~-~~CgH~fC~~Ci~~~~~~~~---~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 19 EVTCPICLELLKEP----VS-ADCNHSFCRACITLNYESNR---NTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTSCTTTCSCCSSC----EE-CTTSCCBCHHHHHHHHHHSB---CTTSCBCCTTTCCCCC
T ss_pred CCCCcCCChhhCcc----ee-CCCCCHHHHHHHHHHHHhcc---CCCCCCCCCCCCCcCC
Confidence 36899999887631 12 35999999999865433211 1223577888876554
No 96
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=31.99 E-value=18 Score=28.27 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=23.6
Q ss_pred CCCCCCCcccCcc-cccccccccCCceEcCCCCC
Q 015607 221 SACMLCGVRFHPI-MCSRHHCRFCGGIFCGECSK 253 (403)
Q Consensus 221 ~~C~~C~~~F~~~-~~RrHHCR~CG~vfC~~CS~ 253 (403)
.-|..|+..|..- ..++-.|..||..||..|-.
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred eECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 3477788765321 13457899999999999975
No 97
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=31.46 E-value=17 Score=26.98 Aligned_cols=27 Identities=26% Similarity=0.568 Sum_probs=17.5
Q ss_pred CCCCCCCcccCcc-----------cccccccccCCceE
Q 015607 221 SACMLCGVRFHPI-----------MCSRHHCRFCGGIF 247 (403)
Q Consensus 221 ~~C~~C~~~F~~~-----------~~RrHHCR~CG~vf 247 (403)
-.|..|++.|..- ..+.+.|..||+.|
T Consensus 4 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f 41 (88)
T 1llm_C 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41 (88)
T ss_dssp EECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred CcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCcc
Confidence 3688999988720 12345677777766
No 98
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=31.14 E-value=9.9 Score=29.58 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=32.4
Q ss_pred CCCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHh
Q 015607 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (403)
+...|.+|...|.. ......-.||++||..|...+.. ....|-.|...+
T Consensus 39 ~~~~C~IC~~~~~~--~~~~~~l~C~H~Fh~~Ci~~wl~---------~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 39 QEMCCPICCSEYVK--GDVATELPCHHYFHKPCVSIWLQ---------KSGTCPVCRCMF 87 (91)
T ss_dssp SCSEETTTTEECCT--TCEEEEETTTEEEEHHHHHHHHT---------TTCBCTTTCCBS
T ss_pred CCCCCcccChhhcC--CCcEEecCCCChHHHHHHHHHHH---------cCCcCcCcCccC
Confidence 34679999998874 12233345999999999765432 124788886544
No 99
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=30.98 E-value=29 Score=24.85 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=16.1
Q ss_pred CCCCCCCcccCccc---ccccccccCCc
Q 015607 221 SACMLCGVRFHPIM---CSRHHCRFCGG 245 (403)
Q Consensus 221 ~~C~~C~~~F~~~~---~RrHHCR~CG~ 245 (403)
-.|..|++.|+.-- .---+|..||.
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred EEeeccCCCccHHHHhhCCCcccCccCc
Confidence 36999999998421 12356777774
No 100
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=30.88 E-value=24 Score=28.38 Aligned_cols=31 Identities=29% Similarity=0.723 Sum_probs=23.2
Q ss_pred CCCCCCCcccCcccccccccccCCceEcCCCCCC
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKG 254 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~ 254 (403)
..|..|.. |+ ..-..-||.|+++|=..|...
T Consensus 16 ~~C~VC~~-~t--~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 16 EMCDVCEV-WT--AESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CCCTTTCC-CC--SSCCSSCSSSSSCCCHHHHHH
T ss_pred cccCcccc-cc--ccceeccccccccccHhhccc
Confidence 67999986 44 246788999999987777643
No 101
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.71 E-value=17 Score=25.42 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=17.8
Q ss_pred CCCCCCCcccCcc----cccccccccCCceEcC
Q 015607 221 SACMLCGVRFHPI----MCSRHHCRFCGGIFCG 249 (403)
Q Consensus 221 ~~C~~C~~~F~~~----~~RrHHCR~CG~vfC~ 249 (403)
-.|..|++.|... ..+.+.|..||+.|-.
T Consensus 19 ~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f~~ 51 (73)
T 2ctu_A 19 QKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQ 51 (73)
T ss_dssp EECSSSCCEEECCCCCCCSSSCCCHHHHHTCSC
T ss_pred eeCCcccchhCCHHHhCcCCCCCCCCCChhhcC
Confidence 4678888877521 1355667777766543
No 102
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.52 E-value=19 Score=20.06 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=8.2
Q ss_pred cccccccCCceE
Q 015607 236 SRHHCRFCGGIF 247 (403)
Q Consensus 236 RrHHCR~CG~vf 247 (403)
+.+.|..||+.|
T Consensus 2 k~~~C~~C~k~f 13 (27)
T 2kvh_A 2 KPFSCSLCPQRS 13 (27)
T ss_dssp CCEECSSSSCEE
T ss_pred cCccCCCcChhh
Confidence 446677777766
No 103
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.40 E-value=26 Score=25.33 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=8.5
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.|..|++.|.
T Consensus 16 ~~C~~C~~~f~ 26 (86)
T 1x6h_A 16 YACSHCDKTFR 26 (86)
T ss_dssp EECSSSSCEES
T ss_pred CcCCCCCCccC
Confidence 46888888886
No 104
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=29.62 E-value=27 Score=25.84 Aligned_cols=29 Identities=31% Similarity=0.629 Sum_probs=17.9
Q ss_pred CCCCCCCCcccCcc-----------cccccccccCCceEc
Q 015607 220 ASACMLCGVRFHPI-----------MCSRHHCRFCGGIFC 248 (403)
Q Consensus 220 ~~~C~~C~~~F~~~-----------~~RrHHCR~CG~vfC 248 (403)
.-.|..|++.|... ..+.+.|..|++.|-
T Consensus 7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 46 (95)
T 2yt9_A 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFK 46 (95)
T ss_dssp CEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEES
T ss_pred CeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccC
Confidence 35789999988621 123345777766653
No 105
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=29.41 E-value=52 Score=25.27 Aligned_cols=39 Identities=28% Similarity=0.634 Sum_probs=26.1
Q ss_pred cCCCCCCCCC--CCcccCcc-cccccccc-----cCCceEcCCCCCC
Q 015607 216 ADSSASACML--CGVRFHPI-MCSRHHCR-----FCGGIFCGECSKG 254 (403)
Q Consensus 216 pd~~~~~C~~--C~~~F~~~-~~RrHHCR-----~CG~vfC~~CS~~ 254 (403)
.+.....|+. |+.....- ..++-.|. .||..||..|...
T Consensus 21 ~~~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~ 67 (80)
T 2jmo_A 21 LQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEA 67 (80)
T ss_dssp CCCSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEE
T ss_pred hhCCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcc
Confidence 3334666775 77754321 24667897 8999999999753
No 106
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.03 E-value=20 Score=19.86 Aligned_cols=10 Identities=40% Similarity=1.082 Sum_probs=5.1
Q ss_pred cccccCCceE
Q 015607 238 HHCRFCGGIF 247 (403)
Q Consensus 238 HHCR~CG~vf 247 (403)
+.|..||+.|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 4455555544
No 107
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=28.96 E-value=16 Score=27.05 Aligned_cols=46 Identities=9% Similarity=-0.011 Sum_probs=30.6
Q ss_pred CCCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHh
Q 015607 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (403)
.-.|.+|...|.- . .--.||++||..|...... .....|-.|...+
T Consensus 8 ~~~C~IC~~~~~~----P-v~~~CgH~fc~~Ci~~~~~--------~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 8 YFRCPISLELMKD----P-VIVSTGQTYERSSIQKWLD--------AGHKTCPKSQETL 53 (78)
T ss_dssp SSSCTTTSCCCSS----E-EEETTTEEEEHHHHHHHHT--------TTCCBCTTTCCBC
T ss_pred cCCCCCccccccC----C-EEcCCCCeecHHHHHHHHH--------HCcCCCCCCcCCC
Confidence 3679999987752 1 1236999999999765432 1245677777544
No 108
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.87 E-value=22 Score=29.20 Aligned_cols=33 Identities=24% Similarity=0.675 Sum_probs=24.0
Q ss_pred CCCCCCCcccCcccccccccccCCce-----EcCCCCCC
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGI-----FCGECSKG 254 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~v-----fC~~CS~~ 254 (403)
..|+.|+..... ....+||..|.+- +|.+|-..
T Consensus 33 ~~CP~Cq~eL~~-~g~~~hC~~C~~~f~~~a~CPdC~q~ 70 (101)
T 2jne_A 33 LHCPQCQHVLDQ-DNGHARCRSCGEFIEMKALCPDCHQP 70 (101)
T ss_dssp CBCSSSCSBEEE-ETTEEEETTTCCEEEEEEECTTTCSB
T ss_pred ccCccCCCccee-cCCEEECccccchhhccccCcchhhH
Confidence 689999998875 3567778888864 56666543
No 109
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=28.81 E-value=20 Score=31.00 Aligned_cols=24 Identities=29% Similarity=0.747 Sum_probs=14.4
Q ss_pred CCCCCCCcccCcccccccccccCCc
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGG 245 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~ 245 (403)
-.|..|++.|... .....|..||.
T Consensus 133 y~C~~Cg~~~~~~-~~~~~Cp~CG~ 156 (165)
T 2lcq_A 133 YVCIGCGRKFSTL-PPGGVCPDCGS 156 (165)
T ss_dssp EEESSSCCEESSC-CGGGBCTTTCC
T ss_pred EECCCCCCcccCC-CCCCcCCCCCC
Confidence 4688888877743 23345666654
No 110
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=28.60 E-value=19 Score=28.74 Aligned_cols=11 Identities=36% Similarity=0.757 Sum_probs=8.8
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.|..|++.|.
T Consensus 75 ~~C~~C~k~f~ 85 (129)
T 2wbt_A 75 FVCPLCLMPFS 85 (129)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCcccC
Confidence 46888888886
No 111
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=28.53 E-value=39 Score=25.81 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=22.9
Q ss_pred ccccccccCCceEcCCCCCCcccccccCCCCC--ccccCcchHh
Q 015607 235 CSRHHCRFCGGIFCGECSKGRSLLPVKFRVSD--PQRVCDVCCV 276 (403)
Q Consensus 235 ~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~--pvRVC~~C~~ 276 (403)
..++.|+.||.|+=..=-.-..-+|+...+.. .--+|-.|-.
T Consensus 5 m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga 48 (70)
T 1dx8_A 5 EGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRS 48 (70)
T ss_dssp SSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCC
T ss_pred CceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCC
Confidence 36899999999975433222223332111111 1237888875
No 112
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=28.39 E-value=21 Score=25.54 Aligned_cols=10 Identities=60% Similarity=1.494 Sum_probs=5.6
Q ss_pred CCCCCCcccC
Q 015607 222 ACMLCGVRFH 231 (403)
Q Consensus 222 ~C~~C~~~F~ 231 (403)
.|..|++.|.
T Consensus 31 ~C~~C~~~f~ 40 (82)
T 2kmk_A 31 PCQYCGKRFH 40 (82)
T ss_dssp ECSSSCCEES
T ss_pred eCCcCChhhC
Confidence 4555665554
No 113
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.38 E-value=20 Score=22.91 Aligned_cols=11 Identities=45% Similarity=1.280 Sum_probs=7.5
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.|..|++.|.
T Consensus 11 ~~C~~C~k~f~ 21 (45)
T 2epq_A 11 YSCPVCGLRFK 21 (45)
T ss_dssp SEETTTTEECS
T ss_pred CcCCCCCcccC
Confidence 45777777775
No 114
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.33 E-value=23 Score=19.79 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=8.9
Q ss_pred cccccccCCceEc
Q 015607 236 SRHHCRFCGGIFC 248 (403)
Q Consensus 236 RrHHCR~CG~vfC 248 (403)
+.+.|..||+.|-
T Consensus 2 k~~~C~~C~k~f~ 14 (28)
T 2kvf_A 2 RPYSCSVCGKRFS 14 (28)
T ss_dssp CSEECSSSCCEES
T ss_pred cCccCCCCCcccC
Confidence 4566788887764
No 115
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=28.30 E-value=19 Score=20.15 Aligned_cols=11 Identities=27% Similarity=0.766 Sum_probs=6.7
Q ss_pred ccccccCCceE
Q 015607 237 RHHCRFCGGIF 247 (403)
Q Consensus 237 rHHCR~CG~vf 247 (403)
.+.|..||+.|
T Consensus 2 ~~~C~~C~~~f 12 (29)
T 1ard_A 2 SFVCEVCTRAF 12 (29)
T ss_dssp CCBCTTTCCBC
T ss_pred CeECCCCCccc
Confidence 35566666655
No 116
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=28.03 E-value=44 Score=24.02 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=10.7
Q ss_pred cccccccCCceEc
Q 015607 236 SRHHCRFCGGIFC 248 (403)
Q Consensus 236 RrHHCR~CG~vfC 248 (403)
+++.|+.||.|+=
T Consensus 2 ~~y~C~~CGyvYd 14 (52)
T 1e8j_A 2 DIYVCTVCGYEYD 14 (52)
T ss_dssp CCEECSSSCCCCC
T ss_pred CcEEeCCCCeEEc
Confidence 5788999999864
No 117
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.83 E-value=23 Score=19.78 Aligned_cols=14 Identities=29% Similarity=0.880 Sum_probs=9.3
Q ss_pred cccccccCCceEcC
Q 015607 236 SRHHCRFCGGIFCG 249 (403)
Q Consensus 236 RrHHCR~CG~vfC~ 249 (403)
+.+.|..||+.|-.
T Consensus 2 k~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 2 KPYQCDYCGRSFSD 15 (30)
T ss_dssp CCEECTTTCCEESC
T ss_pred cCccCCCCCcccCC
Confidence 45668888877643
No 118
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=27.50 E-value=23 Score=26.38 Aligned_cols=21 Identities=33% Similarity=0.804 Sum_probs=14.2
Q ss_pred CCCCCCCCCcccCcccccccc-cccCC
Q 015607 219 SASACMLCGVRFHPIMCSRHH-CRFCG 244 (403)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHH-CR~CG 244 (403)
....|..|+.. .+.|| |..||
T Consensus 29 ~l~~c~~cG~~-----~~pH~vc~~CG 50 (60)
T 2zjr_Z 29 NLTECPQCHGK-----KLSHHICPNCG 50 (60)
T ss_dssp CCEECTTTCCE-----ECTTBCCTTTC
T ss_pred CceECCCCCCE-----eCCceEcCCCC
Confidence 34678999983 34454 87777
No 119
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=27.47 E-value=21 Score=29.70 Aligned_cols=27 Identities=22% Similarity=0.733 Sum_probs=17.3
Q ss_pred CCCCCCcccCcc-----------cccccccccCCceEc
Q 015607 222 ACMLCGVRFHPI-----------MCSRHHCRFCGGIFC 248 (403)
Q Consensus 222 ~C~~C~~~F~~~-----------~~RrHHCR~CG~vfC 248 (403)
.|..|++.|... ..+.+.|..||+.|-
T Consensus 24 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~ 61 (133)
T 2lt7_A 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFP 61 (133)
T ss_dssp EETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEES
T ss_pred ECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecc
Confidence 588888888721 134566777777663
No 120
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=27.41 E-value=34 Score=24.58 Aligned_cols=14 Identities=29% Similarity=0.859 Sum_probs=11.0
Q ss_pred cccccccCCceEcC
Q 015607 236 SRHHCRFCGGIFCG 249 (403)
Q Consensus 236 RrHHCR~CG~vfC~ 249 (403)
+++.|+.||.|+=.
T Consensus 1 ~~~~C~~CGyvYd~ 14 (52)
T 1yk4_A 1 AKLSCKICGYIYDE 14 (52)
T ss_dssp CEEEESSSSCEEET
T ss_pred CcEEeCCCCeEECC
Confidence 36789999999754
No 121
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=27.38 E-value=35 Score=24.85 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=11.9
Q ss_pred cccccccCCceEcCC
Q 015607 236 SRHHCRFCGGIFCGE 250 (403)
Q Consensus 236 RrHHCR~CG~vfC~~ 250 (403)
+++.|+.||.|+=..
T Consensus 2 ~~y~C~~CGyvYd~~ 16 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEA 16 (55)
T ss_dssp CEEEETTTCCEEETT
T ss_pred CcEEeCCCCeEECCC
Confidence 578899999997543
No 122
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=27.28 E-value=22 Score=25.98 Aligned_cols=10 Identities=30% Similarity=0.849 Sum_probs=5.4
Q ss_pred CCCCCCcccC
Q 015607 222 ACMLCGVRFH 231 (403)
Q Consensus 222 ~C~~C~~~F~ 231 (403)
.|..|++.|.
T Consensus 36 ~C~~C~~~f~ 45 (90)
T 1a1h_A 36 QCRICMRNFS 45 (90)
T ss_dssp ECTTTCCEES
T ss_pred cCCCCCcccC
Confidence 4555555554
No 123
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=27.24 E-value=33 Score=26.22 Aligned_cols=29 Identities=28% Similarity=0.808 Sum_probs=21.9
Q ss_pred CCCCCCCCCCcccCcccccccccccC-CceEcCCCC
Q 015607 218 SSASACMLCGVRFHPIMCSRHHCRFC-GGIFCGECS 252 (403)
Q Consensus 218 ~~~~~C~~C~~~F~~~~~RrHHCR~C-G~vfC~~CS 252 (403)
.+-.-|.+|+..=+ ..|.-| |.+||..|-
T Consensus 6 ee~pWC~ICneDAt------lrC~gCdgDLYC~rC~ 35 (67)
T 2d8v_A 6 SGLPWCCICNEDAT------LRCAGCDGDLYCARCF 35 (67)
T ss_dssp CCCSSCTTTCSCCC------EEETTTTSEEECSSHH
T ss_pred cCCCeeEEeCCCCe------EEecCCCCceehHHHH
Confidence 34467999998632 458889 899999885
No 124
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=26.80 E-value=23 Score=25.03 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=16.8
Q ss_pred CCCCC--CCCcccCcc-----------cccccccccCCceE
Q 015607 220 ASACM--LCGVRFHPI-----------MCSRHHCRFCGGIF 247 (403)
Q Consensus 220 ~~~C~--~C~~~F~~~-----------~~RrHHCR~CG~vf 247 (403)
.-.|. .|++.|..- ..+.+.|..||+.|
T Consensus 19 ~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 59 (73)
T 1f2i_G 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59 (73)
T ss_dssp CEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred ccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchh
Confidence 35686 599888621 12345566666655
No 125
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.80 E-value=23 Score=28.13 Aligned_cols=27 Identities=30% Similarity=0.844 Sum_probs=19.8
Q ss_pred CCCCCCCcccCcccccc----cccccCCceEcCC
Q 015607 221 SACMLCGVRFHPIMCSR----HHCRFCGGIFCGE 250 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~Rr----HHCR~CG~vfC~~ 250 (403)
..|..|++. . + .|. -||+.||..|=+.
T Consensus 36 y~CpfCGk~-~-v-kR~a~GIW~C~kCg~~~AGG 66 (83)
T 3j21_i 36 HTCPVCGRK-A-V-KRISTGIWQCQKCGATFAGG 66 (83)
T ss_dssp BCCSSSCSS-C-E-EEEETTEEEETTTCCEEECC
T ss_pred cCCCCCCCc-e-e-EecCcCeEEcCCCCCEEeCC
Confidence 679999985 3 3 343 5899999988654
No 126
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=26.76 E-value=15 Score=30.67 Aligned_cols=57 Identities=19% Similarity=0.480 Sum_probs=5.7
Q ss_pred CCcccCCCCCCCCCCCcccCccc--c-------ccccc----ccCCceEcCCCCCCcccccccCCCCCccccCcchHhH
Q 015607 212 PRWLADSSASACMLCGVRFHPIM--C-------SRHHC----RFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277 (403)
Q Consensus 212 p~Wvpd~~~~~C~~C~~~F~~~~--~-------RrHHC----R~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~ 277 (403)
..|.-|-..+.|.+|...|...- . ....| -.||++|+..|....... ..+|..|-..
T Consensus 40 a~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---------~~~CP~Cr~~ 109 (117)
T 4a0k_B 40 ALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCPLDNRE 109 (117)
T ss_dssp EEEEECCCC----------------------------------------------------------------------
T ss_pred EEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---------CCcCCCCCCe
Confidence 45666667789999999986310 0 01122 269999999998765322 3568777654
No 127
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.65 E-value=32 Score=26.41 Aligned_cols=10 Identities=40% Similarity=1.039 Sum_probs=6.4
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.| .|++.|.
T Consensus 11 ~~C-~C~~~f~ 20 (110)
T 2csh_A 11 YPC-QCGKSFT 20 (110)
T ss_dssp EEC-TTSCEES
T ss_pred Eec-cCCCccC
Confidence 356 6777775
No 128
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.44 E-value=33 Score=26.51 Aligned_cols=8 Identities=13% Similarity=-0.213 Sum_probs=5.4
Q ss_pred CCCCCccc
Q 015607 223 CMLCGVRF 230 (403)
Q Consensus 223 C~~C~~~F 230 (403)
|..|++.|
T Consensus 53 C~~C~~~f 60 (115)
T 2dmi_A 53 DNNNPKRW 60 (115)
T ss_dssp CCCCCSCC
T ss_pred CCCCCccc
Confidence 66666666
No 129
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.11 E-value=13 Score=26.75 Aligned_cols=50 Identities=18% Similarity=0.473 Sum_probs=30.3
Q ss_pred CCCCCCCc-ccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 221 SACMLCGV-RFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 221 ~~C~~C~~-~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
..|.+|.. .|.-- .++.-=-.||++||..|...... +....|-.|-..+.
T Consensus 4 ~~C~IC~~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 4 QGCPRCKTTKYRNP-SLKLMVNVCGHTLCESCVDLLFV--------RGAGNCPECGTPLR 54 (65)
T ss_dssp TCCSTTTTHHHHCS-SCCEEECTTCCCEEHHHHHHHHH--------TTSSSCTTTCCCCS
T ss_pred CcCCcCCCCccCCC-ccCeecCCCCCHhHHHHHHHHHH--------cCCCcCCCCCCccc
Confidence 57999988 55421 11112247999999999765422 11346777776543
No 130
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=25.95 E-value=23 Score=27.45 Aligned_cols=28 Identities=25% Similarity=0.622 Sum_probs=19.3
Q ss_pred CCCCCCCCcccCcccccc----cccccCCceEcCC
Q 015607 220 ASACMLCGVRFHPIMCSR----HHCRFCGGIFCGE 250 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~~Rr----HHCR~CG~vfC~~ 250 (403)
...|..|++. . + .|. -+|+.||..|=..
T Consensus 27 ky~C~fCgk~-~-v-kR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 27 KYKCPVCGFP-K-L-KRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred CccCCCCCCc-e-e-EEEEeEEEECCCCCcEEECC
Confidence 3689999873 2 2 343 7799999987553
No 131
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=25.94 E-value=28 Score=28.17 Aligned_cols=28 Identities=25% Similarity=0.638 Sum_probs=20.1
Q ss_pred CCCCCCCcccCcccccc----cccccCCceEcCCC
Q 015607 221 SACMLCGVRFHPIMCSR----HHCRFCGGIFCGEC 251 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~Rr----HHCR~CG~vfC~~C 251 (403)
..|..|++. . + .|. -||+.||..|=+.-
T Consensus 37 y~CpfCgk~-~-v-kR~a~GIW~C~~Cg~~~AGGA 68 (92)
T 3iz5_m 37 YFCEFCGKF-A-V-KRKAVGIWGCKDCGKVKAGGA 68 (92)
T ss_dssp BCCTTTCSS-C-B-EEEETTEEECSSSCCEEECCS
T ss_pred ccCcccCCC-e-e-EecCcceEEcCCCCCEEeCCc
Confidence 579999985 3 3 343 58999999886543
No 132
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=25.88 E-value=25 Score=19.65 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=8.2
Q ss_pred ccccccCCceEc
Q 015607 237 RHHCRFCGGIFC 248 (403)
Q Consensus 237 rHHCR~CG~vfC 248 (403)
.+.|..||+.|-
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 1rik_A 2 KFACPECPKRFM 13 (29)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhC
Confidence 456777877764
No 133
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.25 E-value=22 Score=19.98 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=8.3
Q ss_pred cccccccCCceE
Q 015607 236 SRHHCRFCGGIF 247 (403)
Q Consensus 236 RrHHCR~CG~vf 247 (403)
+.+.|..||+.|
T Consensus 2 k~~~C~~C~k~f 13 (27)
T 2kvg_A 2 APYRCPLCRAGC 13 (27)
T ss_dssp CTEEETTTTEEE
T ss_pred cCcCCCCCCccc
Confidence 456677787776
No 134
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=25.14 E-value=42 Score=25.92 Aligned_cols=11 Identities=27% Similarity=0.697 Sum_probs=7.9
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.|..|++.|.
T Consensus 8 ~~C~~C~~~f~ 18 (124)
T 2dlq_A 8 VECPTCHKKFL 18 (124)
T ss_dssp CCCTTTCCCCS
T ss_pred CCCCCCCCcCC
Confidence 46777777776
No 135
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=24.77 E-value=18 Score=23.99 Aligned_cols=11 Identities=45% Similarity=1.165 Sum_probs=8.3
Q ss_pred cccccccCCce
Q 015607 236 SRHHCRFCGGI 246 (403)
Q Consensus 236 RrHHCR~CG~v 246 (403)
=+.|||.|-+-
T Consensus 8 ikqhcrfckkk 18 (37)
T 2elu_A 8 IKQHCRFCKKK 18 (37)
T ss_dssp CCCEETTTTEE
T ss_pred HHHHHHHHHHH
Confidence 46799999764
No 136
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.70 E-value=26 Score=19.38 Aligned_cols=12 Identities=42% Similarity=0.880 Sum_probs=7.5
Q ss_pred ccccccCCceEc
Q 015607 237 RHHCRFCGGIFC 248 (403)
Q Consensus 237 rHHCR~CG~vfC 248 (403)
.+.|..||+.|-
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 355777777663
No 137
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=24.60 E-value=28 Score=27.27 Aligned_cols=31 Identities=39% Similarity=0.817 Sum_probs=22.2
Q ss_pred CCCCCCCcccCcccccccccccCCc----eEcCCCCC
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGG----IFCGECSK 253 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~----vfC~~CS~ 253 (403)
..|-.|++.- |.-+|++|..|-. -+|..|-.
T Consensus 22 ~~Cd~C~~~p--I~G~RykC~~C~d~~~yDLC~~C~~ 56 (82)
T 2fc7_A 22 FKCDNCGIEP--IQGVRWHCQDCPPEMSLDFCDSCSD 56 (82)
T ss_dssp CCCSSSCCSS--EESCEEEESSSCSSSCCEEEGGGTT
T ss_pred CCCCCCCCCc--ceeceEECCcCCCCcceecHHHHHh
Confidence 5799998631 2348999999965 57777754
No 138
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=24.48 E-value=35 Score=23.70 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=13.5
Q ss_pred CCCCCCCc-ccCcc-cccccccccCCceE
Q 015607 221 SACMLCGV-RFHPI-MCSRHHCRFCGGIF 247 (403)
Q Consensus 221 ~~C~~C~~-~F~~~-~~RrHHCR~CG~vf 247 (403)
..|..|+. .+.+- ....-.|..||.++
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 46888876 43210 11234455555554
No 139
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.33 E-value=32 Score=27.52 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=9.0
Q ss_pred CCCCCCCcccC
Q 015607 221 SACMLCGVRFH 231 (403)
Q Consensus 221 ~~C~~C~~~F~ 231 (403)
-.|..|++.|.
T Consensus 19 y~C~~Cgk~F~ 29 (102)
T 2ghf_A 19 YECKYCTFQTP 29 (102)
T ss_dssp EECSSCSCEES
T ss_pred cCCCCCCCccC
Confidence 46888998887
No 140
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=24.32 E-value=18 Score=31.12 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=30.8
Q ss_pred CCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
..|.+|...|.-- . --.||+.||..|...... .....|-.|-..+.
T Consensus 79 ~~C~IC~~~~~~p----v-~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 79 FMCVCCQELVYQP----V-TTECFHNVCKDCLQRSFK--------AQVFSCPACRHDLG 124 (150)
T ss_dssp TBCTTTSSBCSSE----E-ECTTSCEEEHHHHHHHHH--------TTCCBCTTTCCBCC
T ss_pred CEeecCChhhcCC----E-EcCCCCchhHHHHHHHHH--------hCCCcCCCCCccCC
Confidence 5799999877631 1 147999999999765432 12346888876544
No 141
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.95 E-value=29 Score=20.80 Aligned_cols=15 Identities=20% Similarity=0.560 Sum_probs=11.2
Q ss_pred ccccccccCCceEcC
Q 015607 235 CSRHHCRFCGGIFCG 249 (403)
Q Consensus 235 ~RrHHCR~CG~vfC~ 249 (403)
.+.+.|..||+.|-.
T Consensus 7 ~k~~~C~~C~k~f~~ 21 (36)
T 2els_A 7 GKIFTCEYCNKVFKF 21 (36)
T ss_dssp CCCEECTTTCCEESS
T ss_pred CCCEECCCCCceeCC
Confidence 466788888888743
No 142
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=23.90 E-value=33 Score=27.77 Aligned_cols=28 Identities=21% Similarity=0.629 Sum_probs=19.8
Q ss_pred CCCCCCCcccCcccccc----cccccCCceEcCCC
Q 015607 221 SACMLCGVRFHPIMCSR----HHCRFCGGIFCGEC 251 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~Rr----HHCR~CG~vfC~~C 251 (403)
..|..|++. . + .|. -||+.||..|=+.-
T Consensus 37 y~CpfCgk~-~-v-kR~a~GIW~C~~C~~~~AGGA 68 (92)
T 3izc_m 37 YDCSFCGKK-T-V-KRGAAGIWTCSCCKKTVAGGA 68 (92)
T ss_dssp CCCSSSCSS-C-C-EEEETTEEECTTTCCEEECCS
T ss_pred CcCCCCCCc-e-e-eecccceEEcCCCCCEEeCCc
Confidence 579999974 3 3 343 58999999886543
No 143
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.54 E-value=17 Score=20.13 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=8.3
Q ss_pred ccccccCCceEcC
Q 015607 237 RHHCRFCGGIFCG 249 (403)
Q Consensus 237 rHHCR~CG~vfC~ 249 (403)
.+.|..||+.|-.
T Consensus 2 p~~C~~C~k~f~~ 14 (26)
T 2lvu_A 2 PYVCERCGKRFVQ 14 (26)
Confidence 4567777776643
No 144
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.70 E-value=28 Score=24.86 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=15.7
Q ss_pred CCCCC--CCcccCcc-----------cccccccccCCceE
Q 015607 221 SACML--CGVRFHPI-----------MCSRHHCRFCGGIF 247 (403)
Q Consensus 221 ~~C~~--C~~~F~~~-----------~~RrHHCR~CG~vf 247 (403)
-.|.. |++.|... ..+.+.|..||+.|
T Consensus 39 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F 78 (79)
T 2dlk_A 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78 (79)
T ss_dssp EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred eECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence 45777 88888620 12345566666654
No 145
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=23.65 E-value=52 Score=25.94 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=22.8
Q ss_pred cccccccCCceEcCCCCCCcccccccCCCCC-c-cccCcchHh
Q 015607 236 SRHHCRFCGGIFCGECSKGRSLLPVKFRVSD-P-QRVCDVCCV 276 (403)
Q Consensus 236 RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~-p-vRVC~~C~~ 276 (403)
.++.|+.||.|+=..=-.-...+|+.-.+.. | --+|-.|-.
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 6799999999985533222223332211111 2 237888875
No 146
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=23.61 E-value=18 Score=30.29 Aligned_cols=45 Identities=20% Similarity=0.518 Sum_probs=29.9
Q ss_pred CCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHhc
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (403)
..|.+|...|.-- .--.||+.||..|...... ....|..|-..+.
T Consensus 54 ~~C~iC~~~~~~~-----~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIEA-----VTLNCAHSFCSYCINEWMK---------RKIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSSE-----EEETTSCEEEHHHHHHHTT---------TCSBCTTTCCBCC
T ss_pred CCCcccCcccCCc-----eECCCCCCccHHHHHHHHH---------cCCcCCCCCCcCC
Confidence 3699999877621 1236999999999754321 2345888876543
No 147
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=23.44 E-value=34 Score=26.24 Aligned_cols=29 Identities=21% Similarity=0.651 Sum_probs=18.1
Q ss_pred CCCCCCCCcccCccc---------ccccccccCCceEc
Q 015607 220 ASACMLCGVRFHPIM---------CSRHHCRFCGGIFC 248 (403)
Q Consensus 220 ~~~C~~C~~~F~~~~---------~RrHHCR~CG~vfC 248 (403)
.-.|..|++.|.... .+.+.|..||+.|-
T Consensus 16 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~ 53 (107)
T 1wjp_A 16 VYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFF 53 (107)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBS
T ss_pred CeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccC
Confidence 357889999887310 12356777777663
No 148
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=22.32 E-value=48 Score=25.65 Aligned_cols=26 Identities=23% Similarity=0.681 Sum_probs=18.5
Q ss_pred CCCCCCCcccCcccccc----cccccCCceEcC
Q 015607 221 SACMLCGVRFHPIMCSR----HHCRFCGGIFCG 249 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~Rr----HHCR~CG~vfC~ 249 (403)
..|..|++. . + .|. -||+.||+.|=+
T Consensus 27 y~C~fCgk~-~-v-kR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 27 YDCSFCGKK-T-V-KRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp BCCSSCCSS-C-B-SBCSSSCBCCSSSCCCCCC
T ss_pred ccCCCCCCc-e-e-EecCCCeEECCCCCCEEeC
Confidence 679999974 3 2 343 589999988754
No 149
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=22.28 E-value=27 Score=19.46 Aligned_cols=10 Identities=20% Similarity=0.580 Sum_probs=6.5
Q ss_pred cccccCCceE
Q 015607 238 HHCRFCGGIF 247 (403)
Q Consensus 238 HHCR~CG~vf 247 (403)
+.|..||+.|
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 5577777665
No 150
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=22.17 E-value=22 Score=30.27 Aligned_cols=45 Identities=18% Similarity=0.414 Sum_probs=31.3
Q ss_pred CCCCCCCcccCcccccccccccCCceEcCCCCCCcccccccCCCCCccccCcchHhHh
Q 015607 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (403)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~vfC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (403)
-.|.+|...|.- ... -.||..||..|...... .....|-.|-..+
T Consensus 32 ~~C~IC~~~~~~----pv~-~~CgH~FC~~Ci~~~~~--------~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLRR----PFQ-AQCGHRYCSFCLASILS--------SGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCSS----EEE-CTTSCEEEHHHHHHHGG--------GSCEECHHHHHTT
T ss_pred cCCCCCChhhcC----cEE-CCCCCccCHHHHHHHHh--------cCCCCCCCCCCcc
Confidence 579999987752 122 38999999999765432 1235799998754
No 151
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.64 E-value=35 Score=20.02 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=10.2
Q ss_pred ccccccccCCceEc
Q 015607 235 CSRHHCRFCGGIFC 248 (403)
Q Consensus 235 ~RrHHCR~CG~vfC 248 (403)
.+.+.|..||+.|-
T Consensus 5 ~k~~~C~~C~k~f~ 18 (35)
T 2elx_A 5 SSGYVCALCLKKFV 18 (35)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCcchhC
Confidence 45677888888774
No 152
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.46 E-value=31 Score=20.52 Aligned_cols=14 Identities=36% Similarity=0.807 Sum_probs=9.9
Q ss_pred ccccccccCCceEc
Q 015607 235 CSRHHCRFCGGIFC 248 (403)
Q Consensus 235 ~RrHHCR~CG~vfC 248 (403)
.+.+.|..||+.|-
T Consensus 7 ~~~~~C~~C~k~f~ 20 (36)
T 2elr_A 7 GKTHLCDMCGKKFK 20 (36)
T ss_dssp CSSCBCTTTCCBCS
T ss_pred CCCeecCcCCCCcC
Confidence 46677888887663
No 153
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.06 E-value=26 Score=29.46 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=11.1
Q ss_pred cccCCceEcCCCC
Q 015607 240 CRFCGGIFCGECS 252 (403)
Q Consensus 240 CR~CG~vfC~~CS 252 (403)
|+.||++++-.+.
T Consensus 90 C~~Cg~v~~~~~~ 102 (139)
T 3mwm_A 90 CRACGKAVEVEGP 102 (139)
T ss_dssp ETTTCCEEEECCH
T ss_pred ECCCCCEeecccc
Confidence 9999999987654
No 154
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.99 E-value=33 Score=23.99 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=5.2
Q ss_pred CCCCCCcccC
Q 015607 222 ACMLCGVRFH 231 (403)
Q Consensus 222 ~C~~C~~~F~ 231 (403)
.|..|++.|.
T Consensus 12 ~C~~C~k~f~ 21 (66)
T 2eod_A 12 PCTYCTKEFV 21 (66)
T ss_dssp ECSSSCCEEE
T ss_pred eccccCCccC
Confidence 3555555553
No 155
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=20.82 E-value=52 Score=26.30 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=12.6
Q ss_pred ccccccccCCceEcCC
Q 015607 235 CSRHHCRFCGGIFCGE 250 (403)
Q Consensus 235 ~RrHHCR~CG~vfC~~ 250 (403)
..++.|+.||.|+=..
T Consensus 33 m~~y~C~vCGyvYD~~ 48 (87)
T 1s24_A 33 YLKWICITCGHIYDEA 48 (87)
T ss_dssp CCEEEETTTTEEEETT
T ss_pred CceEECCCCCeEecCC
Confidence 3689999999997543
No 156
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.70 E-value=32 Score=19.34 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=6.5
Q ss_pred cccccCCceE
Q 015607 238 HHCRFCGGIF 247 (403)
Q Consensus 238 HHCR~CG~vf 247 (403)
+.|..||+.|
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1paa_A 3 YACGLCNRAF 12 (30)
T ss_dssp SBCTTTCCBC
T ss_pred cCCcccCccc
Confidence 5577777665
Done!