BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015610
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/403 (85%), Positives = 372/403 (92%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 60
MGSGIATALILSNYPVILKEVNEKFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G
Sbjct: 323 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKG 382
Query: 61 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSK 120
LDYESF+DVDMVIEA+IEN+SLKQQIFADLEKYCP HCILASNTSTIDLN IGERT S+
Sbjct: 383 SLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQ 442
Query: 121 DRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMF 180
DRIVGAHFFSPAH+MPLLEIVRTN TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMF
Sbjct: 443 DRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMF 502
Query: 181 FPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERT 240
FPYTQAA LVE G D YLIDRAI+KFGMPMGPFRL DLVGFGVAIAT QFIENF ERT
Sbjct: 503 FPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERT 562
Query: 241 YKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKL 300
YKSMIIP+MQEDKRAGE TRKGFYLYD++RKA PDPE+KK+IEKARS+SGV +DPK A L
Sbjct: 563 YKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANL 622
Query: 301 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKY 360
SEKDI+EM FFPVVNEACRVFAEGIAVKAADLDIA +MGMGFPPYRGGIMFWADS+GSKY
Sbjct: 623 SEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKY 682
Query: 361 IYSRLEEWSSLYGEFFKPCAFLAERAGKGATLSAPVEEAKSKL 403
IYSRL+EWS YGEFFKPCAFLAER KG LSAPV++A S+L
Sbjct: 683 IYSRLDEWSKAYGEFFKPCAFLAERGSKGVLLSAPVKQASSRL 725
>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 715
Score = 238 bits (607), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 205/379 (54%), Gaps = 7/379 (1%)
Query: 15 PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVI 74
P+++K++NE +E G+ L RV KG+MT K + ++ + L Y F +VD+V+
Sbjct: 339 PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVV 398
Query: 75 EAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV 134
EA++EN +KQ + A++E + ILASNTSTI ++L+ + + VG HFF+P H+
Sbjct: 399 EAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHM 458
Query: 135 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERG 194
MPL+E++R ++S + + KK+ K PIVV +C GF VNR+ FPY LV G
Sbjct: 459 MPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAG 518
Query: 195 TDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY--KSMIIPIMQED 252
D ID+ + KFG PMGP L D+VG E FP+R + I + E
Sbjct: 519 VDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEA 578
Query: 253 KRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFP 312
KR G+ KGFY Y+ +K KK ++ + I + ++++DI+ + P
Sbjct: 579 KRLGQKNGKGFYAYEADKKGKQ----KKLVDSSVLEVLKPIVYEQRDVTDEDIINWMMIP 634
Query: 313 VVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLY 372
+ E R +GI AA+ D+ V G+GFP +RGG + + DS+G + ++++ L
Sbjct: 635 LCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAEL- 693
Query: 373 GEFFKPCAFLAERAGKGAT 391
G + P A L E A G +
Sbjct: 694 GALYHPTAKLREMAKNGQS 712
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 214/416 (51%), Gaps = 24/416 (5%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 60
MG GIA + V+ E + K L+A + L+ + + K +
Sbjct: 327 MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS 386
Query: 61 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSK 120
+ VD+V+EA+ E+++LK+++FA+L C P L +NTS ++++ I T
Sbjct: 387 --STKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRP 444
Query: 121 DRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMF 180
++G HFFSPAHVM LLE++ + +SP I ++ + KKI K +VVGNC GF NRM
Sbjct: 445 QLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRML 504
Query: 181 FPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFI 233
PY F L+E G+ +D + +FG MGPFR++DL G V TG
Sbjct: 505 APYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLP 564
Query: 234 ENFPER----TYKSMIIPIMQEDKRAGETTRKGFYLYDER--RKASPDPEVKKFIEKARS 287
P R + S + ++ E R G+ T KG+Y YD+ R PDP + F+ + R
Sbjct: 565 PGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYRE 624
Query: 288 MSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRG 347
+ + + +S+++I+E + ++NEA R+ EG+A + +D+ + G G+P ++G
Sbjct: 625 VHHI----EQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKG 680
Query: 348 GIMFWADSLGSKYIYSRLEEWSSLYGEF--FKPCAFLAERAGKGATLSAPVEEAKS 401
G MF+A S+G + +L+++ + +P +L +G S P++E +S
Sbjct: 681 GPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG---SPPLKEWQS 733
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 132/419 (31%), Positives = 217/419 (51%), Gaps = 30/419 (7%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ---SRVKKGKMTQEKFEKTISL 57
MG GIA + V+ E + K L+A + L+ SR + K + S
Sbjct: 48 MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS 107
Query: 58 LTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT 117
T + VD+V+EA+ E+++LK+++FA+L C P L +NTS ++++ I T
Sbjct: 108 ST-----KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASST 162
Query: 118 YSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVN 177
++G HFFSPAHVM LLE++ + +SP I ++ + KKI K +VVGNC GF N
Sbjct: 163 DRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGN 222
Query: 178 RMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIA-------TGM 230
RM PY F L+E G+ +D + +FG MGPFR++DL G V TG
Sbjct: 223 RMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGP 282
Query: 231 QFIENFPER----TYKSMIIPIMQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEK 284
P R + S + ++ E R G+ T KG+Y YD+ R PDP + F+ +
Sbjct: 283 SLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQ 342
Query: 285 ARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPP 344
R + + + +S+++I+E + ++NEA R+ EG+A + +D+ + G G+P
Sbjct: 343 YREVHHI----EQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPR 398
Query: 345 YRGGIMFWADSLGSKYIYSRLEEWSSLYGEF--FKPCAFLAERAGKGATLSAPVEEAKS 401
++GG MF+A S+G + +L+++ + +P +L +G S P++E +S
Sbjct: 399 HKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG---SPPLKEWQS 454
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 214/416 (51%), Gaps = 24/416 (5%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 60
MG GIA + V+ E + K L+A + L+ + + K +
Sbjct: 327 MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS 386
Query: 61 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSK 120
+ VD+V+EA+ E+++LK+++FA+L C P L +NTS ++++ I T
Sbjct: 387 --STKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRP 444
Query: 121 DRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMF 180
++G HFFSPAHVM LLE++ + +SP I ++ + KKI K +VVGNC GF NRM
Sbjct: 445 QLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRML 504
Query: 181 FPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFI 233
PY F L+E G+ +D + +FG MGPFR++DL G V TG
Sbjct: 505 APYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLP 564
Query: 234 ENFPER----TYKSMIIPIMQEDKRAGETTRKGFYLYDER--RKASPDPEVKKFIEKARS 287
P R + S + ++ E R G+ T KG+Y YD+ R PDP + F+ + R
Sbjct: 565 PGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYRE 624
Query: 288 MSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRG 347
+ + + +S+++I+E + ++NEA R+ EG+A + +D+ + G G+P ++G
Sbjct: 625 VHHI----EQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKG 680
Query: 348 GIMFWADSLGSKYIYSRLEEWSSLYGEF--FKPCAFLAERAGKGATLSAPVEEAKS 401
G MF+A S+G + +L+++ + +P +L +G S P++E +S
Sbjct: 681 GPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG---SPPLKEWQS 733
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 214/416 (51%), Gaps = 24/416 (5%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 60
MG GIA + V+ E + K L+A + L+ + + K +
Sbjct: 312 MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS 371
Query: 61 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSK 120
+ VD+V+EA+ E+++LK+++FA+L C P L +NTS ++++ I T
Sbjct: 372 --STKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRP 429
Query: 121 DRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMF 180
++G HFFSPAHVM LLE++ + +SP I ++ + KKI K +VVGNC GF NRM
Sbjct: 430 QLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRML 489
Query: 181 FPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFI 233
PY F L+E G+ +D + +FG MGPFR++DL G V TG
Sbjct: 490 APYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLP 549
Query: 234 ENFPER----TYKSMIIPIMQEDKRAGETTRKGFYLYDER--RKASPDPEVKKFIEKARS 287
P R + S + ++ E R G+ T KG+Y YD+ R PDP + F+ + R
Sbjct: 550 PGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYRE 609
Query: 288 MSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRG 347
+ + + +S+++I+E + ++NEA R+ EG+A + +D+ + G G+P ++G
Sbjct: 610 VHHI----EQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKG 665
Query: 348 GIMFWADSLGSKYIYSRLEEWSSLYGEF--FKPCAFLAERAGKGATLSAPVEEAKS 401
G MF+A S+G + +L+++ + +P +L +G S P++E +S
Sbjct: 666 GPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG---SPPLKEWQS 718
>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of
Multifuctional Enzyme 1 From C.Elegans
Length = 460
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/357 (33%), Positives = 190/357 (53%), Gaps = 25/357 (7%)
Query: 45 KMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 104
++ ++ EK + L D+ + D+++E++IE++ LK+++FA+LE C CI +N
Sbjct: 106 RLNDKRIEKINANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTN 165
Query: 105 TSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT 164
TS++DLN I +VG HFF+PA+V+ L+EI+ + TS Q I + IKK
Sbjct: 166 TSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKL 225
Query: 165 PIVVGNCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFG 223
P++VGNC F NR+ Y Q+ L+ E G + ID+ IT FG MGP +AD+ GF
Sbjct: 226 PVLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFD 285
Query: 224 VAIATGMQFI--ENFPERTYKSMIIPIMQED---KRAGETTRKGFYLYDER-RKASPDPE 277
V M+ + EN E PI +E KR G T KGFY YD++ ++ D E
Sbjct: 286 V-----MEKLKKENGLEPN------PIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTE 334
Query: 278 VKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASV 337
+++ I + + I ++++D++ + +P VNE R EG+ + +DI +
Sbjct: 335 MEQIIRRVSQNAKSNIQI----INDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFI 390
Query: 338 MGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATLSA 394
+G G+P + GG M + + G I + L WSSL K A++ A K A +S
Sbjct: 391 LGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEP---KESAYIVADALKTANVST 444
>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|B Chain B, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|C Chain C, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
Length = 483
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 127/456 (27%), Positives = 202/456 (44%), Gaps = 74/456 (16%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 60
MG+GIA + V+L +++ + L I + A L SRV +GK+T E E+T+ L
Sbjct: 16 MGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP 75
Query: 61 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSK 120
V D + D+VIEA E + +K+ +FA L + CPP +L +NTS+I + I +
Sbjct: 76 VTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNP 135
Query: 121 DRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMF 180
+R+ G HFF+PA VM L+E+V T+ +V+ L ++ K P+ + GF VNR+
Sbjct: 136 ERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPGFIVNRVA 195
Query: 181 FPYTQAAF-LLVERGTDLYLIDRAITK-FGMPMGPFRLADLVGFGVAIATGMQFIENF-- 236
PY A+ L E+ +ID A+ G PMGP L DL+G V A F
Sbjct: 196 RPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFAVTCSVFNAFWQ 255
Query: 237 -----PERTYKSMII---------------------------------PIMQEDKRAGET 258
P + ++I P+ E K G T
Sbjct: 256 ERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDSFSPMKVEKKSDGVT 315
Query: 259 TRKGFYLYDER---------RKASPDPEVKKFIEKARSMSGVAIDPKFA--------KLS 301
L + + R A P + K K +++ A++P A +
Sbjct: 316 EIDDVLLIETQGETAQALAIRLARPVVVIDKMAGKVVTIAAAAVNPDSATRKAIYYLQQQ 375
Query: 302 EKDIVEMIFFP----------VVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMF 351
K ++++ +P ++NEA +G+A + D+D A +G+ +P G +
Sbjct: 376 GKTVLQIADYPGMLIWRTVAMIINEALDALQKGVASE-QDIDTAMRLGVNYPY---GPLA 431
Query: 352 WADSLGSKYIYSRLEEWSSLYG-EFFKPCAFLAERA 386
W LG + I LE YG E ++PC+ L +RA
Sbjct: 432 WGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRA 467
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 136/276 (49%), Gaps = 10/276 (3%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTI 55
MG+GIA + + V+L + E L + +L+ KK K E EKT+
Sbjct: 26 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDECVEKTL 85
Query: 56 SLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114
S + D S D+V+EAI+EN+ +K ++F L+K+ H I ASNTS++ + I
Sbjct: 86 STIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIA 145
Query: 115 ERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 174
T +DR G HFF+P VM L+E+++T TS + L+D K + K P+ + GF
Sbjct: 146 NATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGF 205
Query: 175 AVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGM 230
VNR+ PY A L ERG ID A+ G PMGPF L D VG I G
Sbjct: 206 IVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGW 265
Query: 231 QFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 266
++ S + + + + G+ T +GFY Y
Sbjct: 266 HEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 136/276 (49%), Gaps = 10/276 (3%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTI 55
MG+GIA + + V+L + E L + +L+ KK K E EKT+
Sbjct: 26 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTL 85
Query: 56 SLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114
S + D S D+V+EAI+EN+ +K ++F L+K+ H I ASNTS++ + I
Sbjct: 86 STIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIA 145
Query: 115 ERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 174
T +DR G HFF+P VM L+E+++T TS + L+D K + K P+ + GF
Sbjct: 146 NATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGF 205
Query: 175 AVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGM 230
VNR+ PY A L ERG ID A+ G PMGPF L D VG I G
Sbjct: 206 IVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGW 265
Query: 231 QFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 266
++ S + + + + G+ T +GFY Y
Sbjct: 266 HEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSO|B Chain B, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 136/276 (49%), Gaps = 10/276 (3%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTI 55
MG+GIA + + V+L + E L + +L+ KK K E EKT+
Sbjct: 26 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTL 85
Query: 56 SLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114
S + D S D+V+EAI+EN+ +K ++F L+K+ H I ASNT+++ + I
Sbjct: 86 STIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTASLQITSIA 145
Query: 115 ERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 174
T +DR G HFF+P VM L+E+++T TS + L+D K + K P+ + GF
Sbjct: 146 NATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGF 205
Query: 175 AVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGM 230
VNR+ PY A L ERG ID A+ G PMGPF L D VG I G
Sbjct: 206 IVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGW 265
Query: 231 QFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 266
++ S + + + + G+ T +GFY Y
Sbjct: 266 HEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 136/276 (49%), Gaps = 10/276 (3%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTI 55
MG+GIA + + V+L + E L + +L+ KK K E EKT+
Sbjct: 26 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTL 85
Query: 56 SLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114
S + D S D+V+EAI++N+ +K ++F L+K+ H I ASNTS++ + I
Sbjct: 86 STIATSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIA 145
Query: 115 ERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 174
T +DR G HFF+P VM L+E+++T TS + L+D K + K P+ + GF
Sbjct: 146 NATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGF 205
Query: 175 AVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGM 230
VNR+ PY A L ERG ID A+ G PMGPF L D VG I G
Sbjct: 206 IVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGW 265
Query: 231 QFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 266
++ S + + + + G+ T +GFY Y
Sbjct: 266 HEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 136/276 (49%), Gaps = 10/276 (3%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTI 55
MG+GIA + + V+L + E L + +L+ KK K E EKT+
Sbjct: 26 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTL 85
Query: 56 SLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114
S + D S D+V+EAI+EN+ +K ++F L+K+ H I ASNTS++ + I
Sbjct: 86 STIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIA 145
Query: 115 ERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 174
T +DR G HFF+P VM L+++++T TS + L+D K + K P+ + GF
Sbjct: 146 NATTRQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGF 205
Query: 175 AVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGM 230
VNR+ PY A L ERG ID A+ G PMGPF L D VG I G
Sbjct: 206 IVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGW 265
Query: 231 QFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 266
++ S + + + + G+ T +GFY Y
Sbjct: 266 HEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 143/280 (51%), Gaps = 18/280 (6%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTI 55
MG+GIA + + V+L + E L + +L+ KK K E EKT+
Sbjct: 26 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTL 85
Query: 56 SLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114
S ++ D S D+V+EAI+EN+ +K ++F L+K+ H I ASNTS++ + +
Sbjct: 86 SSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLA 145
Query: 115 ERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 174
T +DR G HFF+P +M L+E+V+T TS + + L+D K + K P+ + GF
Sbjct: 146 NATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGF 205
Query: 175 AVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQF 232
VNR+ PY A L ERG ID A+ G PMGPF L D VG + T
Sbjct: 206 IVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG----LDTTKFI 261
Query: 233 IENFPERTYKSMII---PIMQE---DKRAGETTRKGFYLY 266
I+ + E ++ + P M + + + G+ T +GFY Y
Sbjct: 262 IDGWHEMDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKY 301
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 135/276 (48%), Gaps = 10/276 (3%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTI 55
MG+GIA + + V+L + E L + +L+ KK K E EKT+
Sbjct: 26 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTL 85
Query: 56 SLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114
S + D S D+V+EAI+EN+ +K ++F L+K H I ASNTS++ + I
Sbjct: 86 STIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIA 145
Query: 115 ERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 174
T +DR G HFF+P VM L+E+++T TS + L+D K + K P+ + GF
Sbjct: 146 NATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGF 205
Query: 175 AVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGM 230
VNR+ PY A L ERG ID A+ G PMGPF L D VG I G
Sbjct: 206 IVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGW 265
Query: 231 QFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 266
++ S + + + + G+ T +GFY Y
Sbjct: 266 HEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M76|B Chain B, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 135/276 (48%), Gaps = 10/276 (3%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTI 55
MG+GIA + + V+L + E L + +L+ KK K E EKT+
Sbjct: 26 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTL 85
Query: 56 SLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114
S + D S D+V+EAI+EN+ +K ++F L+K+ H I ASNT ++ + I
Sbjct: 86 STIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTCSLQITSIA 145
Query: 115 ERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 174
T +DR G HFF+P VM L+E+++T TS + L+D K + K P+ + GF
Sbjct: 146 NATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGF 205
Query: 175 AVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGM 230
VNR+ PY A L ERG ID A+ G PMGPF L D VG I G
Sbjct: 206 IVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGW 265
Query: 231 QFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 266
++ S + + + + G+ T +GFY Y
Sbjct: 266 HEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 136/276 (49%), Gaps = 10/276 (3%)
Query: 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTI 55
MG+GIA + + V+L + E L + +L+ KK K E EKT+
Sbjct: 26 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTL 85
Query: 56 SLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114
S + D S D+V+EAI+EN+ +K ++F L+K+ H I ASNTS++ + I
Sbjct: 86 STIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIA 145
Query: 115 ERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 174
T +DR G HFF+P VM L+E+++T TS + L+D K + K P+ + GF
Sbjct: 146 NATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGF 205
Query: 175 AVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGM 230
V+R+ PY A L ERG ID A+ G PMGPF L D VG I G
Sbjct: 206 IVSRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGW 265
Query: 231 QFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 266
++ S + + + + G+ T +GFY Y
Sbjct: 266 HEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
pdb|3RQS|B Chain B, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
Length = 324
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 126/265 (47%), Gaps = 10/265 (3%)
Query: 12 SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTISLLTGVLDYES 66
+ + V+L + E L + +L+ KK K E EKT+S + D S
Sbjct: 59 TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAAS 118
Query: 67 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVG 125
D+V+EAI+EN+ +K ++F L+K+ H I ASNTS++ + I T +DR G
Sbjct: 119 VVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAG 178
Query: 126 AHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQ 185
HFF+P V L+E+++T TS + L+D K + K P+ + GF VNR+ PY
Sbjct: 179 LHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLX 238
Query: 186 AAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGMQFIENFPERTY 241
A L ERG ID A G P GPF L D VG I G +
Sbjct: 239 EAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAENPLHQ 298
Query: 242 KSMIIPIMQEDKRAGETTRKGFYLY 266
S + + + + G+ T +GFY Y
Sbjct: 299 PSPSLNKLVAENKFGKKTGEGFYKY 323
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 124/265 (46%), Gaps = 10/265 (3%)
Query: 12 SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTISLLTGVLDYES 66
+ + V+L + E L + +L+ KK K E KT+S + D S
Sbjct: 26 TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTIATSTDAAS 85
Query: 67 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVG 125
D+V+EAI+EN+ +K ++F L+K H I ASNTS++ + I T +DR G
Sbjct: 86 VVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTRQDRFAG 145
Query: 126 AHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQ 185
HFF+P V L+E+++T TS + L+D K + K P+ + GF VNR+ PY
Sbjct: 146 LHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLX 205
Query: 186 AAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGMQFIENFPERTY 241
A L ERG ID A G P GPF L D VG I G +
Sbjct: 206 EAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAENPLHQ 265
Query: 242 KSMIIPIMQEDKRAGETTRKGFYLY 266
S + + + + G+ T +GFY Y
Sbjct: 266 PSPSLNKLVAENKFGKKTGEGFYKY 290
>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase
(Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At
2.00 A Resolution
Length = 293
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 129/274 (47%), Gaps = 35/274 (12%)
Query: 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV 61
G GIA A I S + V+L++V+EK LEA ++ L S+++ F T+
Sbjct: 24 GRGIAIA-IASKHEVVLQDVSEKALEAAREQIPEELLSKIE--------FTTTL------ 68
Query: 62 LDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKD 121
E KD D+V EA+ E+++ K ++ ++E+ + L SNTS I ++ I ER S
Sbjct: 69 ---EKVKDCDIVXEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVDDIAERLDSPS 123
Query: 122 RIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFA-VNRMF 180
R +G H+ +P HV PL+EIV + T + + + +++ K +V C G + VNR
Sbjct: 124 RFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVV---CKGQSLVNRFN 180
Query: 181 FPYTQAAFLLVERGTDLYLIDRAITKFGMPM-----GPFRLADLVGFGVAIATGMQFIEN 235
A +E G +DR + K + + GP D +G VA + +
Sbjct: 181 AAVLSEASRXIEEGVRAEDVDR-VWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKR 239
Query: 236 FPERTYKSMIIPIMQEDKRAGET---TRKGFYLY 266
F + +K +QE + GE KG Y Y
Sbjct: 240 FGDEKFKPP--EWLQEKIKKGEVGVKAGKGIYEY 271
>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E12|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E13|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
Length = 283
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 7/206 (3%)
Query: 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST-IDLNLIGERTYSKDRI 123
++ KD D+VIEA+ E++ LK+ I+ L + P I A+N+ST + +L+G T D+
Sbjct: 81 QAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVG-YTGRGDKF 139
Query: 124 VGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI-VVGNCTGFAVNRMFFP 182
+ HF + V E++ T +T P+V +++ I PI + G+ +N + P
Sbjct: 140 LALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVP 199
Query: 183 YTQAAF-LLVERGTDLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERT 240
AA LLV+ D ID+ G P GPF + D+V G+ A + + +R
Sbjct: 200 LLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIV--GLTTAYNISSVSGPKQRE 257
Query: 241 YKSMIIPIMQEDKRAGETTRKGFYLY 266
+ + + + + G T +GFY Y
Sbjct: 258 FAAYLKENYIDKGKLGLATGEGFYRY 283
>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
pdb|3F3S|B Chain B, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
Length = 313
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 110/213 (51%), Gaps = 14/213 (6%)
Query: 1 MGSGI---ATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKT 54
+GSG+ + A++ ++ + V L ++ ++ + + +R ++ + G + E+
Sbjct: 9 VGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQ 68
Query: 55 ISLLTGVLDYESFKDVDMVI-EAIIENVSLKQQIFADLEKYCPPHCILASNTSTI-DLNL 112
+SL++G + + + M I E + E++ LK++IFA L+ IL+S+TS + L
Sbjct: 69 LSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKL 128
Query: 113 IGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI-VVGNC 171
+ K IV AH +P + +PL+E+V +T+P + + KKI + P+ V
Sbjct: 129 FAGLVHVKQCIV-AHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEV 187
Query: 172 TGFAVNRMFFPYTQAAFLLVERG----TDLYLI 200
GF +NR+ + A+ LVE G +DL L+
Sbjct: 188 AGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLV 220
>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
pdb|3ADP|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
(
Length = 319
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 111/212 (52%), Gaps = 12/212 (5%)
Query: 1 MGSGI---ATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKT 54
+GSG+ + A++ ++ + V L ++ + + + +R ++S + G + E+
Sbjct: 12 VGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQ 71
Query: 55 ISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 113
+SL++ + E+ + V + E + EN+ LK++IFA L+ +L+S++S + + +
Sbjct: 72 LSLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKL 131
Query: 114 GERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI-VVGNCT 172
+ + AH +P + +PL+E+V +TSP + + +KI ++P+ V+
Sbjct: 132 FTGLAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEID 191
Query: 173 GFAVNRMFFPYTQAAFLLVERG----TDLYLI 200
GF +NR+ + A+ LVE G +DL L+
Sbjct: 192 GFVLNRLQYAIISEAWRLVEEGIVSPSDLDLV 223
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 2 GSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 58
G+G+ +A ++ YP L +++EK LE R R NL+ + + ++ FE+ ++
Sbjct: 54 GTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMV 113
Query: 59 TGVLDYESFKDVD 71
L +D D
Sbjct: 114 VSALSIHHLEDED 126
>pdb|3R9P|A Chain A, Crystal Structure Of Acka From Mycobacterium
Paratuberculosis Atcc Baa-968 K-10
pdb|3R9P|B Chain B, Crystal Structure Of Acka From Mycobacterium
Paratuberculosis Atcc Baa-968 K-10
Length = 391
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 293 IDPKFAKLSEKDIVEMIF-----FPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRG 347
+DP+F + IVE I P + A R + +A DL+ A ++ +G G
Sbjct: 29 VDPEFGVAASTGIVERIGEESSPVPDHDAALRRAFDMLAGDGVDLNTAGLVAVGHRVVHG 88
Query: 348 GIMFWADSLGSKYIYSRLEEWSSL 371
G F+ ++ + +RL E S L
Sbjct: 89 GNTFYRPTVLDDAVIARLHELSEL 112
>pdb|3B9W|A Chain A, The 1.3 A Resolution Structure Of Nitrosomonas Europaea
Rh50 And Mechanistic Implications For Nh3 Transport By
Rhesus Family Proteins
Length = 407
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 176 VNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGM 230
V R F T +L+V G LY++ RA FG + P + ++ A+ATG+
Sbjct: 38 VRRYGFSATTGTYLVVATGLPLYILLRANGIFGHALTPHSVDAVIYAEFAVATGL 92
>pdb|3BHS|A Chain A, Nitrosomonas Europaea Rh50 And Mechanism Of Conduction By
Rhesus Protein Family Of Channels
Length = 406
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 176 VNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGM 230
V R F T +L+V G LY++ RA FG + P + ++ A+ATG+
Sbjct: 37 VRRYGFSATTGTYLVVATGLPLYILLRANGIFGHALTPHSVDAVIYAEFAVATGL 91
>pdb|3B9Y|A Chain A, Crystal Structure Of The Nitrosomonas Europaea Rh Protein
pdb|3B9Z|A Chain A, Crystal Structure Of The Nitrosomonas Europaea Rh Protein
Complexed With Carbon Dioxide
Length = 388
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 176 VNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGM 230
V R F T +L+V G LY++ RA FG + P + ++ A+ATG+
Sbjct: 32 VRRYGFSATTGTYLVVATGLPLYILLRANGIFGHALTPHSVDAVIYAEFAVATGL 86
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 7 TALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL---TGVLD 63
+ +++N P LK++ + F+++G+G+ ++ S+ K ++ K E S+ GVL
Sbjct: 110 SEFLINNQPCRLKDIIDLFMDSGLGKEAFSIISQGKVEEILSSKAEDRRSIFEEAAGVLK 169
Query: 64 YESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 103
Y++ K + + +N++ + I +LE P I AS
Sbjct: 170 YKTRKKKAENKLFETQDNLNRVEDILHELEGQVEPLKIQAS 210
>pdb|1YSY|A Chain A, Nmr Structure Of The Nonstructural Protein 7 (Nsp7) From
The Sars Coronavirus
pdb|2KYS|A Chain A, Nmr Structure Of The Sars Coronavirus Nonstructural
Protein Nsp7 In Solution At Ph 6.5
Length = 85
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 37 LQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQ 85
L + + K T E FEK +SLL+ +L + D++ + E +++N + Q
Sbjct: 37 LHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINRLCEEMLDNRATLQ 85
>pdb|2AHM|A Chain A, Crystal Structure Of Sars-Cov Super Complex Of
Non-Structural Proteins: The Hexadecamer
pdb|2AHM|B Chain B, Crystal Structure Of Sars-Cov Super Complex Of
Non-Structural Proteins: The Hexadecamer
pdb|2AHM|C Chain C, Crystal Structure Of Sars-Cov Super Complex Of
Non-Structural Proteins: The Hexadecamer
pdb|2AHM|D Chain D, Crystal Structure Of Sars-Cov Super Complex Of
Non-Structural Proteins: The Hexadecamer
Length = 88
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 37 LQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQ 85
L + + K T E FEK +SLL+ +L + D++ + E +++N + Q
Sbjct: 40 LHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINRLCEEMLDNRATLQ 88
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 142 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLID 201
RT +P + DLL++ K P+V+GN T ++ F + + R +L+++
Sbjct: 240 RTTWIAPGTLNDLLELKMKHPSAPLVIGN-TYLGLHMKFTDVSYPIIISPARILELFVVT 298
Query: 202 RAITKFGMPMG 212
TK G+ +G
Sbjct: 299 N--TKQGLTLG 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,361,644
Number of Sequences: 62578
Number of extensions: 470488
Number of successful extensions: 1260
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1187
Number of HSP's gapped (non-prelim): 36
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)